RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780340|ref|YP_003064753.1| proline/glycine betaine ABC
transporter, ATP-binding protein [Candidatus Liberibacter asiaticus
str. psy62]
(348 letters)
>gnl|CDD|132456 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines.
Length = 382
Score = 437 bits (1125), Expect = e-123
Identities = 176/386 (45%), Positives = 230/386 (59%), Gaps = 57/386 (14%)
Query: 6 VKFRDVDIVFGETSNKIRKRSRYSIKKHDK-------VSEYGMVSAVIKANLEVKKGEIL 58
+ F++VD+VFG + ++ D+ + E G+V V A+L++++GEI
Sbjct: 1 IDFKNVDVVFG-------DQPAEALALLDQGKTREEILDETGLVVGVANASLDIEEGEIC 53
Query: 59 VLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMHTVSMVFQ 118
VLMGLSG+GKS+LLR++NGL PV RG VLV G ++ DA LR+LR H VSMVFQ
Sbjct: 54 VLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQ 113
Query: 119 QFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKINMLSGGMKQRV 178
+FAL+PW TV NV GLE +P+ ER+ RV E LE+V L +WAD K LSGGM+QRV
Sbjct: 114 KFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRV 173
Query: 179 GFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGN 238
G ARAFA A ILLMDEPFS+LDPLIR +LQDELL LQ KL KTI+FVSHD++EA ++GN
Sbjct: 174 GLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGN 233
Query: 239 RIAIMEGGRIIQCGTPQEIILHPANCYVSEFIQKLNPITALVAADVMR------------ 286
RIAIMEGGRIIQ GTP+EI+L+PAN YV++F+ NP+ L A +MR
Sbjct: 234 RIAIMEGGRIIQHGTPEEIVLNPANDYVADFVAHTNPLNVLTARSLMRPLTDLEHVDGGW 293
Query: 287 -----------------------------VCSIDDES--NIVHKISRQMPLIDIIDMVAD 315
+ ES I+ + D++
Sbjct: 294 CVSDRRDTWLFTIDKQVRRRDAKLPVQAWAAEQEVESLEAAPTVINPDTLMRDVLAARHR 353
Query: 316 NLGKIGVVEDDRIVGIITAIDIVRGL 341
G I +VE+ RIVG+I +I L
Sbjct: 354 TGGAILLVENGRIVGVIGDDNIYHAL 379
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature.
Length = 363
Score = 250 bits (640), Expect = 4e-67
Identities = 117/247 (47%), Positives = 157/247 (63%), Gaps = 4/247 (1%)
Query: 40 GMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYA 99
G V A+L + KGEI V+MGLSG+GKST +R +N L G++ +D + N
Sbjct: 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGE----NIMK 59
Query: 100 ADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNL 159
LR++R + MVFQQFAL P T+ +N LG E L P+ ERK + E L++V L
Sbjct: 60 QSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGL 119
Query: 160 TKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKL 219
++ + LSGGM+QRVG ARA A ILLMDE FS+LDPLIR +QDEL LQ L
Sbjct: 120 EEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATL 179
Query: 220 KKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFIQKLNPITAL 279
+KTIVF++HD++EA R+G+RI IM+ G I+Q GTP EI+ +PAN YV EFI K++
Sbjct: 180 QKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVEEFIGKVDLSQVF 239
Query: 280 VAADVMR 286
A + +
Sbjct: 240 DAERIAQ 246
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 223 bits (570), Expect = 4e-59
Identities = 122/273 (44%), Positives = 171/273 (62%), Gaps = 4/273 (1%)
Query: 14 VFGETSNKIRKRSRYSIKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLR 73
+FGE + K + K + + G+ V A+L +++GEI V+MGLSG+GKST++R
Sbjct: 13 IFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVR 72
Query: 74 SINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVE 133
+N L RG+VL+D G +DA LR++R ++MVFQ FAL+P TV N
Sbjct: 73 LLNRLIEPTRGQVLID---GVDIAKISDAE-LREVRRKKIAMVFQSFALMPHMTVLDNTA 128
Query: 134 LGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLM 193
G+E I ER+ + + L V L +A + LSGGM+QRVG ARA A ILLM
Sbjct: 129 FGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLM 188
Query: 194 DEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGT 253
DE FS+LDPLIR +QDEL+ LQ K ++TIVF+SHD++EA R+G+RIAIM+ G ++Q GT
Sbjct: 189 DEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGT 248
Query: 254 PQEIILHPANCYVSEFIQKLNPITALVAADVMR 286
P EI+ +PAN YV F + ++ A D+ R
Sbjct: 249 PDEILNNPANDYVRTFFRGVDISQVFSAKDIAR 281
>gnl|CDD|163196 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely.
Length = 353
Score = 197 bits (504), Expect = 2e-51
Identities = 96/252 (38%), Positives = 133/252 (52%), Gaps = 12/252 (4%)
Query: 33 HDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD-TD 91
+ +G +A+ +L VKKGE + L+G SG GK+TLLR I GL G + D
Sbjct: 8 DNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRD 67
Query: 92 KGFVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVA 151
+ P D +VFQ +AL P TVA N+ GL+ + E RVA
Sbjct: 68 ITRLPPQKRD-----------YGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVA 116
Query: 152 EHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDE 211
E L++V L LSGG +QRV ARA AT +LL+DEP S+LD +R L+ E
Sbjct: 117 ELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTE 176
Query: 212 LLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFIQ 271
+ LQR+L T + V+HD EA + +RI +M G I Q GTPQEI HPA +V++F+
Sbjct: 177 IRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPFVADFVG 236
Query: 272 KLNPITALVAAD 283
++N +
Sbjct: 237 EVNWLPGTRGGG 248
>gnl|CDD|181868 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 187 bits (476), Expect = 4e-48
Identities = 99/241 (41%), Positives = 132/241 (54%), Gaps = 12/241 (4%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
+L + GE L L+G SG GK+T+LR I G G +++D D +
Sbjct: 34 DLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLD---------GQDITHVPAE 84
Query: 109 RMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKIN 168
H V+ VFQ +AL P TV NV GL P E RV E L +V L ++A K +
Sbjct: 85 NRH-VNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPH 143
Query: 169 MLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSH 228
LSGG +QRV ARA +LL+DE S+LD +R ++Q+EL ALQRKL T VFV+H
Sbjct: 144 QLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTH 203
Query: 229 DINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFIQKLN--PITALVAADVMR 286
D EA + +RI +M GRI Q GTP+EI P N +V+ FI ++N T + D R
Sbjct: 204 DQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKNLFVARFIGEINIFDATVIERLDEQR 263
Query: 287 V 287
V
Sbjct: 264 V 264
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included).
Length = 325
Score = 186 bits (475), Expect = 5e-48
Identities = 98/222 (44%), Positives = 131/222 (59%), Gaps = 12/222 (5%)
Query: 60 LMGLSGAGKSTLLRSINGLAPVVRGEVLVD-TDKGFVNPYAADANVLRKLRMHTVSMVFQ 118
L+G SG GK+TLLR + G G +++D D V P+ LR ++MVFQ
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPH---------LR--HINMVFQ 49
Query: 119 QFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKINMLSGGMKQRV 178
+AL P TV NV GL+ +P E K RV E L +V L ++AD K + LSGG +QRV
Sbjct: 50 SYALFPHMTVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRV 109
Query: 179 GFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGN 238
ARA ILL+DEP S+LD +R ++Q EL +Q +L T VFV+HD EA + +
Sbjct: 110 ALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSD 169
Query: 239 RIAIMEGGRIIQCGTPQEIILHPANCYVSEFIQKLNPITALV 280
RIAIM G+I Q GTP+EI PAN +V+ FI ++N A V
Sbjct: 170 RIAIMRKGKIAQIGTPEEIYEEPANLFVARFIGEINVFEATV 211
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
Length = 237
Score = 185 bits (471), Expect = 2e-47
Identities = 95/237 (40%), Positives = 128/237 (54%), Gaps = 10/237 (4%)
Query: 38 EYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNP 97
+G A+ NLEV G ++ L+G SG+GKSTLLR I GL D G +
Sbjct: 9 RFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLE---------QPDSGRIRL 59
Query: 98 YAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIV 157
DA + R + VFQ +AL TV N+ GLE P + K+RV E LE+V
Sbjct: 60 NGQDATRV-HARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELV 118
Query: 158 NLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQR 217
L D N LSGG +QRV ARA A +LL+DEPF +LD +R L+ L L
Sbjct: 119 QLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHD 178
Query: 218 KLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFIQKLN 274
++ T VFV+HD EA + +RI +M G+I Q G+P E+ HPAN +V F+ ++N
Sbjct: 179 EVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPANPFVMSFLGEVN 235
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 173 bits (439), Expect = 8e-44
Identities = 92/232 (39%), Positives = 133/232 (57%), Gaps = 12/232 (5%)
Query: 44 AVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD-TDKGFVNPYAADA 102
AV +L + KGEI L+G SG GKSTLLR + G G++++D D V PY
Sbjct: 34 AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPY---- 89
Query: 103 NVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKW 162
++M+FQ +AL P TV +N+ GL+ +P E SRV E L +V++ ++
Sbjct: 90 -------QRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEF 142
Query: 163 ADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKT 222
A K + LSGG +QRV AR+ A +LL+DEP +LD +R R+Q E++ + ++ T
Sbjct: 143 AKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVT 202
Query: 223 IVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFIQKLN 274
V V+HD EA + RIAIM G+ +Q G P+EI HP Y +EFI +N
Sbjct: 203 CVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYSAEFIGSVN 254
>gnl|CDD|183001 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 170 bits (433), Expect = 5e-43
Identities = 98/237 (41%), Positives = 132/237 (55%), Gaps = 19/237 (8%)
Query: 42 VSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAAD 101
+ A+ +L + GEI ++G SGAGKSTL+R IN L G VLVD + A
Sbjct: 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDG----QDLTALS 73
Query: 102 ANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTK 161
LRK R + M+FQ F LL RTV NV L LE P E K+RV E LE+V L+
Sbjct: 74 EKELRKAR-RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSD 132
Query: 162 WADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDP------LIRMRLQDELLA- 214
AD LSGG KQRV ARA A+ +LL DE S+LDP L ELL
Sbjct: 133 KADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSIL-------ELLKD 185
Query: 215 LQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFIQ 271
+ R+L TIV ++H+++ R+ +R+A+++ GR+++ GT E+ HP + EFIQ
Sbjct: 186 INRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHPKHPLTREFIQ 242
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 161 bits (409), Expect = 3e-40
Identities = 92/237 (38%), Positives = 125/237 (52%), Gaps = 28/237 (11%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEV-LVDTDKGFVNPYAADANVLRK 107
+L++ G+++ L+G SG+GK+TLLR I GL G + TD
Sbjct: 22 SLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVS-------------- 67
Query: 108 LRMHT----VSMVFQQFALLPWRTVARNVELGLEFLDIPDVER------KSRVAEHLEIV 157
R+H V VFQ +AL TV N+ GL L P ER K++V + LE+V
Sbjct: 68 -RLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVL--PRRERPNAAAIKAKVTQLLEMV 124
Query: 158 NLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQR 217
L AD LSGG KQRV ARA A ILL+DEPF +LD +R L+ L L
Sbjct: 125 QLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHE 184
Query: 218 KLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFIQKLN 274
+LK T VFV+HD EA + +R+ +M G I Q GTP ++ PA +V EF+ ++N
Sbjct: 185 ELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPATRFVLEFMGEVN 241
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 159 bits (402), Expect = 1e-39
Identities = 87/244 (35%), Positives = 135/244 (55%), Gaps = 15/244 (6%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGL--APVVRGEVLV-DTDKGFV 95
YG + + +LE++ GE+L L+G SG GK+TLLR+I G A + G + + D D
Sbjct: 15 YGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHA 74
Query: 96 NPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLE 155
P+ ++++FQ +AL P V NV GL +P + RVA+ L+
Sbjct: 75 PPHK-----------RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALK 123
Query: 156 IVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLAL 215
+V L A LSGGM+QR+ ARA A +LL+DEP S+LD IR +++E+ AL
Sbjct: 124 LVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAAL 183
Query: 216 QRKLKK-TIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFIQKLN 274
+L + TI+ V+HD ++A L ++ IM+ GR+ G PQ + PA+ + +EF+ N
Sbjct: 184 HEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAPADGFAAEFLGAAN 243
Query: 275 PITA 278
+ A
Sbjct: 244 ILPA 247
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 157 bits (399), Expect = 4e-39
Identities = 84/243 (34%), Positives = 141/243 (58%), Gaps = 18/243 (7%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD----TDKGFVNPYAADANV 104
NL +K+G ++ L+G SG GK+T+LR + GL G++ +D T
Sbjct: 26 NLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTH------------- 72
Query: 105 LRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWAD 164
R ++ + MVFQ +AL P ++ NV GL+ L +P ERK RV E LE+V+L + D
Sbjct: 73 -RSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFED 131
Query: 165 CKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIV 224
++ +SGG +QRV ARA +LL DEP S+LD +R +++++ LQ++ T +
Sbjct: 132 RYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSL 191
Query: 225 FVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFIQKLNPITALVAADV 284
+V+HD +EAF + + + +M G+I+Q G+PQE+ PA+ +++ F+ N A ++ D
Sbjct: 192 YVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRFMASFMGDANIFPATLSGDY 251
Query: 285 MRV 287
+ +
Sbjct: 252 VDI 254
>gnl|CDD|183258 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 155 bits (394), Expect = 1e-38
Identities = 95/232 (40%), Positives = 129/232 (55%), Gaps = 21/232 (9%)
Query: 45 VIKA-NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVN---PYAA 100
VIK +L+V GE +VL+G SG GKSTLLR + GL + GE+ + VN P A
Sbjct: 19 VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRV--VNELEP--A 74
Query: 101 DANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLT 160
D ++ +MVFQ +AL P +V N+ GL+ +P E + RVAE I+ L
Sbjct: 75 DRDI---------AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELE 125
Query: 161 KWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIR--MRLQDELLALQRK 218
D K LSGG +QRV RA + L DEP S+LD +R MRL E+ L R+
Sbjct: 126 PLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRL--EIQRLHRR 183
Query: 219 LKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFI 270
LK T ++V+HD EA L +R+ +M GG Q GTP E+ PA+ +V+ FI
Sbjct: 184 LKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPASTFVASFI 235
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 154 bits (390), Expect = 4e-38
Identities = 84/232 (36%), Positives = 130/232 (56%), Gaps = 10/232 (4%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPY 98
YG V NL++ +GE +V +G SG GKSTLLR I GL + G++ + + +N
Sbjct: 13 YGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKR--MN-- 68
Query: 99 AADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVN 158
+V R V MVFQ +AL P +VA N+ GL+ E RV + E++
Sbjct: 69 ----DVPPAER--GVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQ 122
Query: 159 LTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRK 218
L D K LSGG +QRV R + L+DEP S+LD +R++++ E+ L ++
Sbjct: 123 LAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR 182
Query: 219 LKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFI 270
L +T+++V+HD EA L ++I +++ GR+ Q G P E+ +PAN +V+ FI
Sbjct: 183 LGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPANRFVAGFI 234
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase.
Length = 230
Score = 153 bits (388), Expect = 6e-38
Identities = 82/211 (38%), Positives = 126/211 (59%), Gaps = 15/211 (7%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
NL +++GE + L+G SG GKSTLL I+GLA G V+++ + + D
Sbjct: 5 NLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQ--ITEPGPD------- 55
Query: 109 RMHTVSMVFQQFALLPWRTVARNVELGLEFL--DIPDVERKSRVAEHLEIVNLTKWADCK 166
RM +VFQ ++LLPW TV N+ L ++ + D+ ER++ V EH+ +V LT+ AD +
Sbjct: 56 RM----VVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKR 111
Query: 167 INMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFV 226
LSGGMKQRV ARA + +LL+DEPF +LD L R LQ+EL+ + + + T++ V
Sbjct: 112 PGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMV 171
Query: 227 SHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257
+HD++EA L +R+ ++ G G E+
Sbjct: 172 THDVDEALLLSDRVVMLTNGPAANIGQILEV 202
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 143 bits (361), Expect = 8e-35
Identities = 88/244 (36%), Positives = 129/244 (52%), Gaps = 7/244 (2%)
Query: 30 IKKHDKVSEYG--MVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVL 87
+ KV G + A+ +L V G+I ++G SGAGKSTL+R +N L G V+
Sbjct: 4 LSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVI 63
Query: 88 VDTDKGFVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERK 147
VD + ++ L K R + M+FQ F LL RTV NV L LE + P E K
Sbjct: 64 VD-GQDLTTLSNSE---LTKARRQ-IGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIK 118
Query: 148 SRVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMR 207
+V E L +V L D + LSGG KQRV ARA A+ +LL DE S+LDP
Sbjct: 119 RKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQS 178
Query: 208 LQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVS 267
+ + L + R+L TI+ ++H+++ R+ + +A++ G +I+ GT EI HP
Sbjct: 179 ILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLAQ 238
Query: 268 EFIQ 271
+FI+
Sbjct: 239 KFIR 242
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 142 bits (359), Expect = 2e-34
Identities = 86/257 (33%), Positives = 132/257 (51%), Gaps = 20/257 (7%)
Query: 30 IKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD 89
++ D +G+++ + N V GE + L+G SG+GKST+LR + L P+ G++ V+
Sbjct: 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVE 60
Query: 90 TD--------KGFVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELG-LEFLD 140
+ G + P AD LR++R + MVFQ F L P +TV NV + L
Sbjct: 61 GEQLYHMPGRNGPLVP--ADEKHLRQMRNK-IGMVFQSFNLFPHKTVLDNVTEAPVLVLG 117
Query: 141 IPDVERKSRVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSL 200
+ E + R E L++V L AD LSGG +QRV ARA A ++L DE S+L
Sbjct: 118 MARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSAL 177
Query: 201 DPLIRMRLQDELLALQRKL----KKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQE 256
DP L E+L + R+L T++ V+H++ A +R+ + GRI++ G P E
Sbjct: 178 DP----ELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDE 233
Query: 257 IILHPANCYVSEFIQKL 273
I P EF+ K+
Sbjct: 234 IFRQPKEERTREFLSKV 250
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 142 bits (359), Expect = 2e-34
Identities = 85/227 (37%), Positives = 128/227 (56%), Gaps = 14/227 (6%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
+L + +GE++V++G SG+GKSTLLR IN L + G+++VD K VN D ++R+
Sbjct: 21 DLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLK--VNDPKVDERLIRQ- 77
Query: 109 RMHTVSMVFQQFALLPWRTVARNVELG-LEFLDIPDVERKSRVAEHLEIVNLTKWADCKI 167
MVFQQF L P T NV G L E + + E L V L + A
Sbjct: 78 ---EAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYP 134
Query: 168 NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKK---TIV 224
+ LSGG +QRV ARA A ++L DEP S+LDP L+ E+L + + L + T+V
Sbjct: 135 SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDP----ELRHEVLKVMQDLAEEGMTMV 190
Query: 225 FVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFIQ 271
V+H+I A ++ +R+ ++ GRI + G PQ +I +P + + EF+Q
Sbjct: 191 IVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNPPSQRLQEFLQ 237
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 141 bits (358), Expect = 2e-34
Identities = 76/216 (35%), Positives = 113/216 (52%), Gaps = 15/216 (6%)
Query: 37 SEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVN 96
++YG A+ NL ++ GE+LV++G SG GK+TLL I G P G + +D V
Sbjct: 9 ADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKP--VE 66
Query: 97 PYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEI 156
A+ V VFQ LLPWR V NV GL+ + ++R + L+
Sbjct: 67 GPGAERGV-----------VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKK 115
Query: 157 VNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQ 216
V L I LSGG +QRVG ARA A +LL+DEPF +LD R ++Q LL L
Sbjct: 116 VGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLW 175
Query: 217 RKLKKTIVFVSHDINEAFRLGNRIAIME--GGRIIQ 250
++ K ++ ++HDI EA + + ++ GR+++
Sbjct: 176 QETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVE 211
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates.
Length = 243
Score = 139 bits (353), Expect = 9e-34
Identities = 77/230 (33%), Positives = 110/230 (47%), Gaps = 18/230 (7%)
Query: 39 YGMVSAVIKA-NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD-TDKGFVN 96
Y +K NL + GE + ++G SGAGKSTLLR IN L G +L++ TD
Sbjct: 11 YPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDIT--- 67
Query: 97 PYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELG---------LEFLDIPDVERK 147
LRKLR M+FQ + L+ TV NV G + E K
Sbjct: 68 --KLRGKKLRKLRRRI-GMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSE-EDK 123
Query: 148 SRVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMR 207
R LE V L A + + LSGG +QRV ARA A ++L DEP +SLDP +
Sbjct: 124 ERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQ 183
Query: 208 LQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257
+ D L + ++ T++ H ++ A + +RI ++ G I+ G P E+
Sbjct: 184 VMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233
>gnl|CDD|130045 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters.
Length = 247
Score = 132 bits (333), Expect = 2e-31
Identities = 82/248 (33%), Positives = 126/248 (50%), Gaps = 31/248 (12%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSIN---GLAPVVR--GEVLVDTDKG 93
YG A+ NL++ K ++ L+G SG GKSTLLRS+N L P VR G+VL D
Sbjct: 11 YGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQD- 69
Query: 94 FVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEH 153
+ D LR+ V MVFQ+ P ++ N+ G I D + + E
Sbjct: 70 -IYDKKIDVVELRR----RVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEE 123
Query: 154 LEIVNLTK---WADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLI 204
L K W + K + LSGG +QR+ ARA A +LL+DEP S+LDP+
Sbjct: 124 S----LKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIA 179
Query: 205 RMRLQDELLALQRKLKK--TIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPA 262
++++ L ++LKK TIV V+H++ +A R+ +R A G +++ G ++I +P
Sbjct: 180 TGKIEE----LIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTNPK 235
Query: 263 NCYVSEFI 270
++I
Sbjct: 236 EKRTEDYI 243
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 130 bits (328), Expect = 6e-31
Identities = 85/233 (36%), Positives = 126/233 (54%), Gaps = 18/233 (7%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGL----APVVR-GEVLVDTDKGFVNPYAADAN 103
+LEVK GE++ ++G SG+GK+TLLR IN L A +R G++ +DT + +
Sbjct: 23 DLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTAR----SLSQQKG 78
Query: 104 VLRKLRMHTVSMVFQQFALLPWRTVARNVELG-LEFLDIPDVERKSRVAEHLEIVNLTKW 162
++R+LR H V VFQ F L P RTV N+ G + P E +R E L V L
Sbjct: 79 LIRQLRQH-VGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGK 137
Query: 163 ADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKL--- 219
LSGG +QRV ARA A ++L DEP S+LDP L E+L R+L
Sbjct: 138 ETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDP----ELVGEVLNTIRQLAQE 193
Query: 220 KKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFIQK 272
K+T+V V+H+++ A + +R M+ GRI++ G + + P +F++K
Sbjct: 194 KRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADPQQPRTRQFLEK 246
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found.
Length = 213
Score = 129 bits (326), Expect = 1e-30
Identities = 73/209 (34%), Positives = 113/209 (54%), Gaps = 20/209 (9%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
+L V GEI+ +MG SGAGKSTLL I G G + V+ D +
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVN-----------DQSHTGLA 66
Query: 109 -RMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKI 167
VSM+FQ+ L TV +N+ LGL + E++ +V + + V + + D
Sbjct: 67 PYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP 126
Query: 168 NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKL----KKTI 223
LSGG +QRV AR PILL+DEPFS+LDPL+R +E+LAL ++L ++T+
Sbjct: 127 EQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLR----EEMLALVKQLCSERQRTL 182
Query: 224 VFVSHDINEAFRLGNRIAIMEGGRIIQCG 252
+ V+H +++A + ++IA++ G+I
Sbjct: 183 LMVTHHLSDARAIASQIAVVSQGKIKVVS 211
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 126 bits (319), Expect = 8e-30
Identities = 77/216 (35%), Positives = 111/216 (51%), Gaps = 4/216 (1%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPY 98
YG A+ L+ +GE LVL+G SGAGKS+LLR +N L + R L F
Sbjct: 12 YGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLN-LLEMPRSGTLNIAGNHFDFSK 70
Query: 99 AADANVLRKLRMHTVSMVFQQFALLPWRTVARN-VELGLEFLDIPDVERKSRVAEHLEIV 157
+R+LR V MVFQQ+ L P TV +N +E L + + +R + LE +
Sbjct: 71 TPSDKAIRELR-RNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERL 129
Query: 158 NLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQR 217
L +AD LSGG +QRV ARA +LL DEP ++LDP I ++ + L
Sbjct: 130 RLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELA- 188
Query: 218 KLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGT 253
+ T V V+H++ A + +R+ ME G I++ G
Sbjct: 189 ETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGD 224
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking
protein.
Length = 214
Score = 125 bits (317), Expect = 1e-29
Identities = 80/203 (39%), Positives = 109/203 (53%), Gaps = 14/203 (6%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGF-VNPYAADANVLRK 107
+L ++KGE L L G SGAGK+TLL+ + G RG+V + G VN L
Sbjct: 22 SLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIA---GEDVNRL--RGRQLPL 76
Query: 108 LRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKI 167
LR + +VFQ F LLP RTV NV L LE + E + RV L V L AD
Sbjct: 77 LRRR-IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP 135
Query: 168 NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKK---TIV 224
LSGG +QRV ARA P+LL DEP +LDP L + +L L ++L K T++
Sbjct: 136 EQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDP----DLSERILDLLKRLNKRGTTVI 191
Query: 225 FVSHDINEAFRLGNRIAIMEGGR 247
+HD++ R+ +R+ I++ GR
Sbjct: 192 VATHDLSLVDRVAHRVIILDDGR 214
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter.
Length = 354
Score = 125 bits (315), Expect = 2e-29
Identities = 65/218 (29%), Positives = 102/218 (46%), Gaps = 18/218 (8%)
Query: 46 IKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAP------VVRGEVLVDTDKGFVNPYA 99
+ A+ + + + G SG+GK+TL+R I GL V+ G L D+ KG P
Sbjct: 14 LDADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLP-- 71
Query: 100 ADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNL 159
K R + VFQ+ L P +V N+ G++ ER+ +E++ +
Sbjct: 72 -----PEKRR---IGYVFQEARLFPHLSVRGNLRYGMKRARPS--ERRISFERVIELLGI 121
Query: 160 TKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKL 219
LSGG KQRV RA + +LLMDEP ++LD + + L L +
Sbjct: 122 GHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEF 181
Query: 220 KKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257
I++VSH + E RL +R+ ++E GR+ G E+
Sbjct: 182 GIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEV 219
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc.
Length = 302
Score = 123 bits (311), Expect = 5e-29
Identities = 72/222 (32%), Positives = 116/222 (52%), Gaps = 16/222 (7%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPY 98
YG AV N +V++GE+ +G +GAGK+T +R + L G V Y
Sbjct: 3 YGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSG-------TARVAGY 55
Query: 99 AADANVLR---KLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLE 155
+V+R K+R ++ +V Q ++ T N+E+ +P E + R E LE
Sbjct: 56 ----DVVREPRKVR-RSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLE 110
Query: 156 IVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLAL 215
+ L + AD + SGGM++R+ A + +L +DEP + LDP R + D + AL
Sbjct: 111 LFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRAL 170
Query: 216 QRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257
++ TI+ +H + EA +L +RIAI++ GRII GTP+E+
Sbjct: 171 -KEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEEL 211
>gnl|CDD|163352 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins.
Length = 206
Score = 121 bits (307), Expect = 2e-28
Identities = 70/186 (37%), Positives = 101/186 (54%), Gaps = 11/186 (5%)
Query: 47 KANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLR 106
NL ++KG++ ++G SG+GKSTLL I L G+V ++ K + A+ R
Sbjct: 16 DLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLN-GKETPPLNSKKASKFR 74
Query: 107 KLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCK 166
+ + +FQ FAL+ TV N++LGL++ + E++ + E LE V L K
Sbjct: 75 R---EKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQK 131
Query: 167 INMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLK---KTI 223
I LSGG +QRV ARA P++L DEP SLDP R DE+L L +L KTI
Sbjct: 132 IYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNR----DEVLDLLLELNDEGKTI 187
Query: 224 VFVSHD 229
+ V+HD
Sbjct: 188 IIVTHD 193
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 120 bits (302), Expect = 7e-28
Identities = 76/222 (34%), Positives = 117/222 (52%), Gaps = 24/222 (10%)
Query: 44 AVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADAN 103
A+ + V +GE + ++G +G+GKSTL + +NGL G + V G V +
Sbjct: 22 ALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVG---GMVLSEETVWD 78
Query: 104 VLRKLRMHTVSMVFQ----QFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNL 159
V R+ V MVFQ QF TV +V GLE + +P E RV + L V +
Sbjct: 79 VRRQ-----VGMVFQNPDNQFV---GATVQDDVAFGLENIGVPREEMVERVDQALRQVGM 130
Query: 160 TKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKL 219
+ + + + LSGG KQRV A A I+++DE S LDP R E+L R+L
Sbjct: 131 EDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGR----REVLETVRQL 186
Query: 220 KK----TIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257
K+ T++ ++HD++EA + +R+ +M G I++ GTP+EI
Sbjct: 187 KEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEILEEGTPEEI 227
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 120 bits (302), Expect = 7e-28
Identities = 81/243 (33%), Positives = 124/243 (51%), Gaps = 35/243 (14%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSIN---GLAPVVR--GEVLVDTDKG 93
YG A+ K NL++++ ++ L+G SG GKST LR++N L P V+ GEVL+D
Sbjct: 13 YGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQD- 71
Query: 94 FVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPD-------VER 146
+ D N LRK V MVFQQ P ++ NV G I D VE+
Sbjct: 72 -IYKSDIDVNQLRK----RVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEK 125
Query: 147 KSRVAEHLEIVNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSL 200
+ A W + K + LSGG +QR+ ARA A +LLMDEP S+L
Sbjct: 126 SLKGA--------ALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSAL 177
Query: 201 DPLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILH 260
DP+ +++++ L + K TIV V+H++ +A R+ ++ A G I++ G ++ +
Sbjct: 178 DPISTLKIEE--LIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFTN 235
Query: 261 PAN 263
P +
Sbjct: 236 PKD 238
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 116 bits (293), Expect = 7e-27
Identities = 73/206 (35%), Positives = 106/206 (51%), Gaps = 17/206 (8%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNP-YAADANVLRK 107
NLE+ GEI++L G SG+GK+TLL I GL V G + V Y A L +
Sbjct: 25 NLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKV-----LGQELYGASEKELVQ 79
Query: 108 LRMHTVSMVFQQFALLPWRTVARNVELGLEFLD-IPDVERKSRVAEHLEIVNLTKWADCK 166
LR + + +FQ LL + T +NV++ LE + E + R LE V L D
Sbjct: 80 LRRN-IGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYY 138
Query: 167 INMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKK----T 222
+ LSGG KQRV ARA ++L DEP ++LD + +++ L +KL + T
Sbjct: 139 PHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDS----KSGRDVVELMQKLAREQGCT 194
Query: 223 IVFVSHDINEAFRLGNRIAIMEGGRI 248
I+ V+HD N + +RI ME G++
Sbjct: 195 ILIVTHD-NRILDVADRIVHMEDGKL 219
>gnl|CDD|184197 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 116 bits (292), Expect = 9e-27
Identities = 70/217 (32%), Positives = 118/217 (54%), Gaps = 19/217 (8%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD----TDKGFVNPYAADANV 104
N+E++ GE + L+G +G+GKSTL++ +NGL G++++D TDK +
Sbjct: 27 NIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKK------VKLSD 80
Query: 105 LRKLRMHTVSMVFQ--QFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLT-- 160
+RK V +VFQ ++ L T+ +++ G L + + E ++RV + IV L
Sbjct: 81 IRK----KVGLVFQYPEYQLFE-ETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYE 135
Query: 161 KWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLK 220
+ D LSGG K+RV A A IL++DEP + LDP R + +++ L ++
Sbjct: 136 DYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYN 195
Query: 221 KTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257
TI+ VSH + + +L +RI +M G+ GTP+E+
Sbjct: 196 MTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV 232
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 116 bits (292), Expect = 1e-26
Identities = 77/245 (31%), Positives = 120/245 (48%), Gaps = 25/245 (10%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSIN---GLAPVVR--GEVLVDTDKG 93
Y A+ +L+ EI L+G SG+GKSTLLRSIN L P V G ++ +
Sbjct: 15 YNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGH-- 72
Query: 94 FVNPYA--ADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVA 151
N Y+ D LRK + MVFQQ P ++ NV GL I D +
Sbjct: 73 --NIYSPRTDTVDLRK----EIGMVFQQPNPFPM-SIYENVVYGLRLKGIKDKQVLDEAV 125
Query: 152 EHLEIVNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIR 205
E + + W + K + LSGG +QRV AR AT I+L+DEP S+LDP+
Sbjct: 126 EK-SLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISA 184
Query: 206 MRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCY 265
++++ LL L K T++ V+ + +A R+ +R G +I+ +++ ++P +
Sbjct: 185 GKIEETLLGL--KDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMNPKHKE 242
Query: 266 VSEFI 270
++I
Sbjct: 243 TEDYI 247
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 115 bits (288), Expect = 2e-26
Identities = 82/237 (34%), Positives = 118/237 (49%), Gaps = 25/237 (10%)
Query: 38 EYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGL-----APVVRGEVLVDTDK 92
+G V + NLE+ I LMG SG+GKSTLLR N L V GEV +D
Sbjct: 12 SFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQD 71
Query: 93 GFVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEF--LDIPDVERKSRV 150
F D LR+ V MVFQ +P ++ NV LGL+ L E + RV
Sbjct: 72 IF----KMDVIELRR----RVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERV 123
Query: 151 AEHLEIVNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLI 204
LE L W + K + LSGG +QR+ ARA A +LL DEP ++LDP
Sbjct: 124 RWALEKAQL--WDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPEN 181
Query: 205 RMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHP 261
+++ L L++ + TIV V+H +A R+ + +A + G+I++ G +E+ +P
Sbjct: 182 TAKIESLFLELKKDM--TIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTNP 236
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 114 bits (288), Expect = 3e-26
Identities = 79/245 (32%), Positives = 130/245 (53%), Gaps = 25/245 (10%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSIN---GLAPV--VRGEVLVDTDKG 93
YG A+ +LE ++ ++ L+G SG GKST LR +N L P V GE+L+D +
Sbjct: 16 YGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGE-- 73
Query: 94 FVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEH 153
N Y +V+ R V MVFQ+ P +++ NV GL + V+ K+ +AE
Sbjct: 74 --NIYDPHVDVVELRRR--VGMVFQKPNPFP-KSIFENVAYGLR---VNGVKDKAYLAER 125
Query: 154 LE--IVNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIR 205
+E + + W + K + LSGG +QR+ ARA A +LLMDEP S+LDP+
Sbjct: 126 VERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIAT 185
Query: 206 MRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCY 265
++++ L + K + TI+ V+H++ +A R+ + A G++I+ G ++I P
Sbjct: 186 QKIEE--LIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTRPREKQ 243
Query: 266 VSEFI 270
++I
Sbjct: 244 TEDYI 248
>gnl|CDD|184591 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 114 bits (286), Expect = 5e-26
Identities = 73/225 (32%), Positives = 116/225 (51%), Gaps = 18/225 (8%)
Query: 50 LEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLR 109
++ + G I ++G SGAGKSTL++ IN L G +L+D D LR+
Sbjct: 24 VKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILID-GVDIKT---IDVIDLRR-- 77
Query: 110 MHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDV--ERKSRVAEHLEIVNLTK-WADCK 166
+ MVFQQ L TV N+E G P + E+ V +L IV L K +A
Sbjct: 78 --KIGMVFQQPHLFE-GTVKDNIEYG------PMLKGEKNVDVEYYLSIVGLNKEYATRD 128
Query: 167 INMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFV 226
+ LSGG QRV AR A +LL+DEP S+LDP +++ ++ L+ K+ T++++
Sbjct: 129 VKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWI 188
Query: 227 SHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFIQ 271
+H++ +A R+G+ A + G +++ + +P N FIQ
Sbjct: 189 THNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTKLFIQ 233
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 113 bits (285), Expect = 5e-26
Identities = 74/210 (35%), Positives = 115/210 (54%), Gaps = 16/210 (7%)
Query: 52 VKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMH 111
VK+GE L ++G +G+GKST +R I+GL G++++D D + NV H
Sbjct: 30 VKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDL------LTEENVWDI--RH 81
Query: 112 TVSMVFQ----QFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKI 167
+ MVFQ QF TV +V GLE IP E K RV E LE+V + + + +
Sbjct: 82 KIGMVFQNPDNQFV---GATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP 138
Query: 168 NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVS 227
LSGG KQRV A A A I+++DE S LDP R+ L + ++ + T++ ++
Sbjct: 139 ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISIT 198
Query: 228 HDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257
HD++E L +R+ +M+ G++ TP+E+
Sbjct: 199 HDLDEV-ALSDRVLVMKNGQVESTSTPREL 227
>gnl|CDD|184193 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 113 bits (285), Expect = 7e-26
Identities = 77/218 (35%), Positives = 116/218 (53%), Gaps = 15/218 (6%)
Query: 44 AVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADAN 103
A+ NLEVKKGE LV++G +G+GKST+ + +N L G+V VD +D
Sbjct: 25 ALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVD------GLDTSDEE 78
Query: 104 VLRKLRMHTVSMVFQ----QFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNL 159
L +R + MVFQ Q + V +V G E L IP E + RV E L+ V +
Sbjct: 79 NLWDIR-NKAGMVFQNPDNQ---IVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGM 134
Query: 160 TKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKL 219
++ ++LSGG KQRV A A ++ DEP + LDP R + + + L +K
Sbjct: 135 YEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKY 194
Query: 220 KKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257
TI+ ++H + EA +RI +M+ G+++ GTP+EI
Sbjct: 195 GITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEI 231
>gnl|CDD|184133 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 113 bits (285), Expect = 8e-26
Identities = 72/221 (32%), Positives = 108/221 (48%), Gaps = 24/221 (10%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD-TDKGFVNPYAADANVLRK 107
+L ++ GE++ ++G +GAGKSTLLR+++G GEV ++ +P A
Sbjct: 22 SLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAEL-ARRRAV 80
Query: 108 LRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKI 167
L H+ S+ F P+ TV V +G + E + VA L V+L A
Sbjct: 81 LPQHS-SLSF------PF-TVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDY 132
Query: 168 NMLSGGMKQRVGFARAFA------TGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKK 221
LSGG +QRV AR A LL+DEP S+LD Q +L L R+L
Sbjct: 133 PQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDL----AHQHHVLRLARQLAH 188
Query: 222 ----TIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEII 258
++ V HD+N A R +RI ++ GR++ GTP E++
Sbjct: 189 ERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVL 229
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous.
Length = 230
Score = 113 bits (284), Expect = 9e-26
Identities = 69/236 (29%), Positives = 112/236 (47%), Gaps = 19/236 (8%)
Query: 44 AVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAP----VVRGEVLVDTDKGFVNPYA 99
V NL +K+GE+L L+G SG+GKS +I GL P GE+L+D P
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDG-----RPLL 55
Query: 100 ADANVLRKLRMHTVSMVFQ--QFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIV 157
+ +R ++ + Q + A P T+ + L L + ++ + E LE V
Sbjct: 56 PLS-----IRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAV 110
Query: 158 NLTKWA---DCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLA 214
L LSGGM QRV A A P L+ DEP + LD + + R+ L
Sbjct: 111 GLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRE 170
Query: 215 LQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFI 270
L++ I+ ++HD+ R+ + +A+M+ GRI++ GT +EI +P + + +
Sbjct: 171 LRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTRKLL 226
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 112 bits (283), Expect = 1e-25
Identities = 71/220 (32%), Positives = 108/220 (49%), Gaps = 30/220 (13%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
+L V++GE + ++G SGAGKSTLL I G G + ++ + R
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNG-----QDHTTTPPSRRP- 72
Query: 109 RMHTVSMVFQQFALLPWRTVARNVELGLEFLDIP----DVERKSRVAEHLEIVNLTKWAD 164
VSM+FQ+ L TVA+N+ LGL P + ++ ++ + +
Sbjct: 73 ----VSMLFQENNLFSHLTVAQNIGLGLN----PGLKLNAAQREKLHAIARQMGIEDLLA 124
Query: 165 CKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLAL------QRK 218
LSGG +QRV AR PILL+DEPFS+LDP +R E+L L +R+
Sbjct: 125 RLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALR----QEMLTLVSQVCQERQ 180
Query: 219 LKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEII 258
L T++ VSH + +A R+ R ++ GRI G E++
Sbjct: 181 L--TLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELL 218
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 112 bits (281), Expect = 2e-25
Identities = 81/247 (32%), Positives = 129/247 (52%), Gaps = 22/247 (8%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLV---------D 89
YG + +L+ G+++ ++G SG+GKST LR IN L G ++V D
Sbjct: 15 YGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRD 74
Query: 90 TDKGFVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNV-ELGLEFLDIPDVERKS 148
D AD N LR LR ++MVFQ F L TV NV E ++ L + E +
Sbjct: 75 KDGQL---KVADKNQLRLLRTR-LTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARE 130
Query: 149 RVAEHLEIVNLTKWADCKINM-LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMR 207
R ++L V + + A K + LSGG +QRV ARA A +LL DEP S+LDP
Sbjct: 131 RAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDP----E 186
Query: 208 LQDELLALQRKLK---KTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANC 264
L E+L + ++L KT+V V+H++ A + + + + G+I + G P+++ +P +
Sbjct: 187 LVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNPQSP 246
Query: 265 YVSEFIQ 271
+ +F++
Sbjct: 247 RLQQFLK 253
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2.
Length = 520
Score = 111 bits (280), Expect = 2e-25
Identities = 71/244 (29%), Positives = 123/244 (50%), Gaps = 27/244 (11%)
Query: 30 IKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD 89
+ K + G+V AV +LEVK+GEI ++G SGAGK+TL + I G+ GEV V
Sbjct: 285 VSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVR 344
Query: 90 --------TDKGFVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNV--ELGLEFL 139
T G R + ++ Q++ L P RTV N+ +GLE
Sbjct: 345 VGDEWVDMTKPGPDG---------RGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLEL- 394
Query: 140 DIPDVERKSRVAEHLEIVNLTKWADCKI-----NMLSGGMKQRVGFARAFATGAPILLMD 194
PD + + L++V + +I + LS G + RV A+ I+++D
Sbjct: 395 --PDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILD 452
Query: 195 EPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTP 254
EP ++DP+ ++ + +L + ++++T + VSHD++ + +R A+M G+I++ G P
Sbjct: 453 EPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDP 512
Query: 255 QEII 258
+EI+
Sbjct: 513 EEIV 516
Score = 81.4 bits (201), Expect = 3e-16
Identities = 67/260 (25%), Positives = 105/260 (40%), Gaps = 34/260 (13%)
Query: 30 IKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTL---LRSINGLAPV----- 81
I+ + ++ + + +++GE+L ++G SGAGKS L LR ++ P
Sbjct: 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRII 60
Query: 82 -----------------------VRGEVLVDTDKGFVNPYAADANVLRKLRMHTVSMVFQ 118
V G L + F N + R++R M+ +
Sbjct: 61 YHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNL---SDKLRRRIRKRIAIMLQR 117
Query: 119 QFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKINMLSGGMKQRV 178
FAL TV NV LE + E R + +E+V L+ LSGG KQRV
Sbjct: 118 TFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRV 177
Query: 179 GFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGN 238
AR A + L DEP +LDP + + L + ++V SH L +
Sbjct: 178 VLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSD 237
Query: 239 RIAIMEGGRIIQCGTPQEII 258
+ +E G I + GTP E++
Sbjct: 238 KAIWLENGEIKEEGTPDEVV 257
>gnl|CDD|183331 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 111 bits (280), Expect = 2e-25
Identities = 73/217 (33%), Positives = 104/217 (47%), Gaps = 20/217 (9%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
+L V +G+I +MG SG GK+TLLR I G GE+L D + + + +
Sbjct: 27 SLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGE---------NIPAMSRS 77
Query: 109 RMHTV----SMVFQQFALLPWRTVARNVELGL-EFLDIPDVERKSRVAEHLEIVNLTKWA 163
R++TV SM+FQ AL V NV L E +P S V LE V L A
Sbjct: 78 RLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAA 137
Query: 164 DCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPL---IRMRLQDELLALQRKLK 220
+ LSGGM +R ARA A +++ DEPF DP+ + ++L E L L
Sbjct: 138 KLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISE---LNSALG 194
Query: 221 KTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257
T V VSHD+ E + + I+ +I+ G+ Q +
Sbjct: 195 VTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL 231
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 110 bits (277), Expect = 5e-25
Identities = 70/200 (35%), Positives = 107/200 (53%), Gaps = 19/200 (9%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
+L + G+ + ++G SG GKSTLLR + GL GE+L A L +
Sbjct: 32 DLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELL------------AGTAPLAEA 79
Query: 109 RMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKIN 168
R T ++FQ LLPW+ V NV LGL+ + + + L V L A+
Sbjct: 80 REDT-RLMFQDARLLPWKKVIDNVGLGLKG------QWRDAALQALAAVGLADRANEWPA 132
Query: 169 MLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSH 228
LSGG KQRV ARA +LL+DEP +LD L R+ +QD + +L ++ T++ V+H
Sbjct: 133 ALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTH 192
Query: 229 DINEAFRLGNRIAIMEGGRI 248
D++EA + +R+ ++E G+I
Sbjct: 193 DVSEAVAMADRVLLIEEGKI 212
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 110 bits (276), Expect = 6e-25
Identities = 79/239 (33%), Positives = 122/239 (51%), Gaps = 24/239 (10%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
N + +KGE++ L+G +GAGKSTL NG+ GEVL+ P D L ++
Sbjct: 22 NFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKG-----EPIKYDKKSLLEV 76
Query: 109 RMHTVSMVFQQ-----FALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWA 163
R TV +VFQ FA P TV +V G L + E + RV E L+ V + +
Sbjct: 77 R-KTVGIVFQNPDDQLFA--P--TVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFE 131
Query: 164 DCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTI 223
+ + LSGG K+RV A A I+++DEP S LDP+ ++ L L ++ TI
Sbjct: 132 NKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKE-GITI 190
Query: 224 VFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI-----ILHPANC---YVSEFIQKLN 274
+ +HD++ +++ +M G+II+ GTP+E+ + AN V+ I+ LN
Sbjct: 191 IISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDIETIRKANLRLPRVAHLIEILN 249
>gnl|CDD|169949 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 109 bits (273), Expect = 1e-24
Identities = 75/232 (32%), Positives = 116/232 (50%), Gaps = 19/232 (8%)
Query: 34 DKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKG 93
D E+G + + +L V++G ++ L+G +GAGK+TLLR+ING G VLV D
Sbjct: 8 DLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGD-- 65
Query: 94 FVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELG----LEFLDIPDVERKSR 149
+ A A + V+ V Q +L V + VE+G D ++
Sbjct: 66 --DVEALSARAASRR----VASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAA 119
Query: 150 VAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQ 209
V +E + ++AD + LSGG +QRV ARA A P+LL+DEP +SLD + Q
Sbjct: 120 VERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLD----INHQ 175
Query: 210 DELLALQRKL---KKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEII 258
L L R+L KT V HD++ A R + + ++ GR+ G P +++
Sbjct: 176 VRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVL 227
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 109 bits (273), Expect = 1e-24
Identities = 80/247 (32%), Positives = 128/247 (51%), Gaps = 28/247 (11%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVV-----RGEVLVDTDKG 93
YG + NL++ K E+ +G SG GKST LR N + V +GE+ +D
Sbjct: 15 YGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDG--- 71
Query: 94 FVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERK--SRVA 151
++ Y+ D NV+ L V MVFQ+ P +++ NV G + + ++K V
Sbjct: 72 -IDVYSVDTNVV--LLRAKVGMVFQKPNPFP-KSIYDNVAYGPKLHGLAKNKKKLDEIVE 127
Query: 152 EHLEIVNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIR 205
+ L V L W + + LSGG +QR+ ARA A +LLMDEP S+LDP+
Sbjct: 128 KSLTSVGL--WEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVAT 185
Query: 206 MRLQDELLALQRKLKK--TIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPAN 263
+++ L ++LKK TI+ V+H + +A ++ +R+A + GRI++ T QEI +P +
Sbjct: 186 NVIEN----LIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKNPQS 241
Query: 264 CYVSEFI 270
+I
Sbjct: 242 SKTKRYI 248
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 108 bits (270), Expect = 3e-24
Identities = 77/243 (31%), Positives = 118/243 (48%), Gaps = 21/243 (8%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAP-----VVRGEVLVDTDKG 93
YG AV +++ K +I ++G SG GK+TLLRSIN + V G++ +
Sbjct: 13 YGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFK-GQD 71
Query: 94 FVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEH 153
+P D RK V MVFQ+ P ++ NV G + + R+ E
Sbjct: 72 IYDP-QLDVTEYRK----KVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEE 125
Query: 154 LEIVNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMR 207
+ W + K + LSGG +QR+ ARA A ++L+DEP S+LDP+ R
Sbjct: 126 -SLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQR 184
Query: 208 LQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVS 267
++ L L TIV V+H+I +A R+ + IA M G +I+ G +EI+ P N
Sbjct: 185 IEKLLEELSENY--TIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVERPKNKLTE 242
Query: 268 EFI 270
E++
Sbjct: 243 EYL 245
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 108 bits (270), Expect = 3e-24
Identities = 79/245 (32%), Positives = 125/245 (51%), Gaps = 25/245 (10%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSIN---GLAPVVR--GEVLVDTDKG 93
YG A+ NL + + +I L+G SG GKST LR +N L V+ GEVL+D
Sbjct: 14 YGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGK-- 71
Query: 94 FVNPYAADANV--LRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVA 151
N Y D +V LRK V MVFQ+ P ++ NV G I D + ++
Sbjct: 72 --NIYDKDVDVVELRK----RVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIV 124
Query: 152 EHLEIVNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIR 205
E + W + K ++ LSGG +QR+ AR A ++LMDEP S+LDP+
Sbjct: 125 EW-ALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPIST 183
Query: 206 MRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCY 265
++++D ++ L+++ TIV V+H++ +A R+ + A G +I+ ++I L P
Sbjct: 184 LKIEDLMVELKKEY--TIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFLEPQKKE 241
Query: 266 VSEFI 270
++I
Sbjct: 242 TEDYI 246
>gnl|CDD|184583 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 107 bits (270), Expect = 3e-24
Identities = 82/253 (32%), Positives = 128/253 (50%), Gaps = 43/253 (16%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGL-----APVVRGEVL---VDT 90
YG A+ +++ +K +I L+G SG+GKST LRS+N + V G++L +D
Sbjct: 30 YGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDI 89
Query: 91 DKGFVNPYAADANVLRKLRMHTVSMVFQQ---FALLPWRTVARNVELGLEFLDIPD---- 143
++ +N Y ++R H + MVFQ+ FA +++ N+ LE + D
Sbjct: 90 NRKEINVY--------EMRKH-IGMVFQRPNPFA----KSIYENITFALERAGVKDKKVL 136
Query: 144 ---VERKSRVAEHLEIV--NLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFS 198
VE + A + V +L K A LSGG +QR+ ARA A ILLMDEP S
Sbjct: 137 DEIVETSLKQAALWDQVKDDLHKSA----LTLSGGQQQRLCIARAIAVKPDILLMDEPAS 192
Query: 199 SLDPLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEII 258
+LDP+ M+L++ + L K TI+ V+H++ +A R + A G +I+ + I
Sbjct: 193 ALDPISTMQLEETMFEL--KKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIF 250
Query: 259 LHP----ANCYVS 267
+P N YVS
Sbjct: 251 TNPKLQSTNDYVS 263
>gnl|CDD|130034 TIGR00960, 3a0501s02, Type II (General) Secretory Pathway (IISP)
Family protein.
Length = 216
Score = 106 bits (267), Expect = 7e-24
Identities = 73/205 (35%), Positives = 98/205 (47%), Gaps = 16/205 (7%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRK- 107
N + KGE++ L+G SGAGKST L+ I G+ RG++ + G D LR
Sbjct: 23 NFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFN---GQ------DLTRLRGR 73
Query: 108 ----LRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWA 163
LR H + MVFQ LL RTV NV L + +P + RV+ LE V L A
Sbjct: 74 EIPFLRRH-IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKA 132
Query: 164 DCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTI 223
LSGG +QRV ARA P+LL DEP +LDP + + R T+
Sbjct: 133 HALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR-RGTTV 191
Query: 224 VFVSHDINEAFRLGNRIAIMEGGRI 248
+ +HDIN +R + GR+
Sbjct: 192 LVATHDINLVETYRHRTLTLSRGRL 216
>gnl|CDD|184124 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 106 bits (267), Expect = 7e-24
Identities = 77/230 (33%), Positives = 112/230 (48%), Gaps = 10/230 (4%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPY 98
YG V + V++GE L+G +GAGK+T LR + GL G + + G P
Sbjct: 17 YGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISL---CGEPVPS 73
Query: 99 AADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVN 158
A R R V +V Q L P TV N+ + + + ++ V LE
Sbjct: 74 RA-----RHARQR-VGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAK 127
Query: 159 LTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRK 218
L AD K+ LSGGMK+R+ ARA +L++DEP + LDP R + + L +L +
Sbjct: 128 LENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLAR 187
Query: 219 LKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSE 268
KTI+ +H + EA RL +R+ ++E GR I G P +I C V E
Sbjct: 188 -GKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIESEIGCDVIE 236
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 106 bits (265), Expect = 1e-23
Identities = 82/245 (33%), Positives = 131/245 (53%), Gaps = 23/245 (9%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSIN---GLAPVVR--GEVLVDTDKG 93
YG A+ N+ V + ++ L+G SG GKST LR N L P GE+++ D
Sbjct: 26 YGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDN- 84
Query: 94 FVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEH 153
VN + + + + ++RM +SMVFQ+ P +++ NV GL I V+R+S + E
Sbjct: 85 -VNILSPEVDPI-EVRMR-ISMVFQKPNPFP-KSIFENVAYGLR---IRGVKRRSILEER 137
Query: 154 LE--IVNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIR 205
+E + N W + K + LSGG +QR+ ARA AT ILL DEP S+LDP+
Sbjct: 138 VENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIAT 197
Query: 206 MRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCY 265
+++ + L+ K+ TI+ V+H++ +A R+ + A M G +I+ G I + P N
Sbjct: 198 ASIEELISDLKNKV--TILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIFIKPKNKQ 255
Query: 266 VSEFI 270
++I
Sbjct: 256 TEDYI 260
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux.
Length = 190
Score = 105 bits (265), Expect = 1e-23
Identities = 67/193 (34%), Positives = 100/193 (51%), Gaps = 22/193 (11%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
N ++GE+L L+G +GAGKSTLL +NGL G VL+D + P L +
Sbjct: 12 NFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGE-----PLDYSRKGLLER 66
Query: 109 RMHTVSMVFQQ-----FALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWA 163
R V +VFQ FA V ++V G L + + E + RV E L V +
Sbjct: 67 RQR-VGLVFQDPDDQLFA----ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLR 121
Query: 164 DCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLK--- 220
+ + LSGG K+RV A A A +LL+DEP + LDP ++++LA+ R+L+
Sbjct: 122 ERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDP----AGREQMLAILRRLRAEG 177
Query: 221 KTIVFVSHDINEA 233
T+V +HD++ A
Sbjct: 178 MTVVISTHDVDLA 190
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 105 bits (263), Expect = 2e-23
Identities = 75/244 (30%), Positives = 128/244 (52%), Gaps = 23/244 (9%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAP-----VVRGEVLVDTDKG 93
YG A+ +L+ ++ E+ L+G SG GKST LR +N + + GE+ +
Sbjct: 14 YGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQ-- 71
Query: 94 FVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVER-KSRVAE 152
N Y + + L +LR V MVFQQ P+ +V NV GL+ + D E RV E
Sbjct: 72 --NIYGSKMD-LVELR-KEVGMVFQQPTPFPF-SVYDNVAYGLKIAGVKDKELIDQRVEE 126
Query: 153 HLEIVNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRM 206
L+ + W + K N+ SGG +QR+ ARA A ++L+DEP S+LDP+
Sbjct: 127 SLKQAAI--WKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSS 184
Query: 207 RLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYV 266
+++ L+ L+ + T + V+H++ +A R+ ++ A + G +I+ G +E+ + P
Sbjct: 185 EIEETLMELKHQY--TFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIAPKKQIT 242
Query: 267 SEFI 270
S+++
Sbjct: 243 SDYL 246
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 105 bits (263), Expect = 2e-23
Identities = 83/239 (34%), Positives = 123/239 (51%), Gaps = 30/239 (12%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSIN---GLAPVVR--GEVLVDTDKG 93
YG AV NL+V++G + L+G SG GK+T LR+IN L P R G +L+D
Sbjct: 14 YGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDI 73
Query: 94 F---VNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRV 150
+ V+P A +R+ V MVFQ+ P +V NV GL+ I D + V
Sbjct: 74 YGPRVDPVA-----MRR----RVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEV 124
Query: 151 AEHLEIVNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLI 204
AE + W + K + LSGG +QR+ ARA A ILLMDEP S+LDP
Sbjct: 125 AER-SLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPAS 183
Query: 205 RMRLQDELLALQRKLKK--TIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHP 261
R++D L LKK TI+ V+H++++A R+ + + G +++ G ++ +P
Sbjct: 184 TARIED----LMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTNP 238
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 104 bits (261), Expect = 4e-23
Identities = 75/214 (35%), Positives = 112/214 (52%), Gaps = 24/214 (11%)
Query: 52 VKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMH 111
+ KG+ ++G +G+GKST+ + + G+ V GE+ F N A + KLR H
Sbjct: 32 IPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI-------FYNNQAITDDNFEKLRKH 84
Query: 112 TVSMVFQ----QFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKI 167
+ +VFQ QF V +V GLE +P E RV+E L+ V++ + AD +
Sbjct: 85 -IGIVFQNPDNQFV---GSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEP 140
Query: 168 NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKK----TI 223
N LSGG KQRV A A ++++DE S LDP R LL L RK+K TI
Sbjct: 141 NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDAR----QNLLDLVRKVKSEHNITI 196
Query: 224 VFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257
+ ++HD++EA + + +M G + + GTP EI
Sbjct: 197 ISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEI 229
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
Length = 265
Score = 104 bits (260), Expect = 4e-23
Identities = 77/224 (34%), Positives = 120/224 (53%), Gaps = 19/224 (8%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
+L +++GE + L+G SG GKSTL R + GL +G V +G + Y D R
Sbjct: 31 SLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSF---RG-QDLYQLDRKQRRAF 86
Query: 109 RMHTVSMVFQQF--ALLPWRTVARNVELGLE-FLDIPDVERKSRVAEHLEIVNL-TKWAD 164
R V +VFQ A+ P TV + + L + + E+K+R+AE L++V L ++ AD
Sbjct: 87 R-RDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDAD 145
Query: 165 CKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKK--- 221
LSGG QR+ ARA A ++++DE S+LD M LQ +L L RKL++
Sbjct: 146 KLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLD----MVLQAVILELLRKLQQAFG 201
Query: 222 -TIVFVSHDINEAFRLGNRIAIMEGGRII-QCGTPQEIIL-HPA 262
+F++HD+ R+A+M+ G+I+ +C Q + HPA
Sbjct: 202 TAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLSFKHPA 245
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 103 bits (259), Expect = 6e-23
Identities = 77/233 (33%), Positives = 122/233 (52%), Gaps = 24/233 (10%)
Query: 45 VIKA-NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPV-----VRGEVLVDTDKGFVNPY 98
VIK +L++ + + LMG SG GKSTLLR+ N L + V GEV + N Y
Sbjct: 19 VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFG----RNIY 74
Query: 99 AADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEF--LDIPDVERKSRVAEHLEI 156
+ D + + R V MVFQ P T+ NV +G++ L E RV L+
Sbjct: 75 SPDVDPIEVRR--EVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKK 132
Query: 157 VNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQD 210
L W + K + LSGG +QR+ ARA A ILLMDEP +++DP+ ++++
Sbjct: 133 AAL--WDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEE 190
Query: 211 ELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPAN 263
L L+++ TIV V+H +A R+ + +A + G++I+ G +++ +P +
Sbjct: 191 LLFELKKEY--TIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENPEH 241
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 103 bits (259), Expect = 7e-23
Identities = 70/234 (29%), Positives = 110/234 (47%), Gaps = 33/234 (14%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPY 98
YG + +L + G+I L+G +G GKSTLL+ L G V + P
Sbjct: 12 YGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGD-----KPI 66
Query: 99 AADANVLRKLRMHTVSMVFQQFALLPWR-------TVARNVELG----LEFLDIPDVERK 147
+ ++ R+L ++ ALLP TV V G L E
Sbjct: 67 SMLSS--RQLA--------RRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDN 116
Query: 148 SRVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMR 207
+RV + +E + AD ++ LSGG +QR A A P++L+DEP + LD +
Sbjct: 117 ARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLD----IN 172
Query: 208 LQDELLALQRKLK---KTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEII 258
Q EL+ L R+L KT+V V HD+N+A R + + ++ G ++ GTP+E++
Sbjct: 173 HQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM 226
>gnl|CDD|184595 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 103 bits (257), Expect = 8e-23
Identities = 76/232 (32%), Positives = 117/232 (50%), Gaps = 19/232 (8%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSIN---GLAPVVRGEVLVDTDKGFVNPYAADANVL 105
NL++ K + L+G SG GKST +R++N L P R E + D + A D L
Sbjct: 23 NLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVEL 82
Query: 106 RKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVER-KSRVAEHLEIVNLTKWAD 164
RK V MVFQ+ P +++ NV GL D + + RV E L+ L W +
Sbjct: 83 RK----KVGMVFQKPNPFP-KSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAAL--WDE 135
Query: 165 CKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRK 218
K + LSGG +QR+ AR A ++LMDEP S+LDP+ +++D L + K
Sbjct: 136 VKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIED--LIHKLK 193
Query: 219 LKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFI 270
TIV V+H++ +A R+ + G II+ G +I ++P + ++I
Sbjct: 194 EDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFINPKDKRTEDYI 245
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 103 bits (257), Expect = 1e-22
Identities = 77/245 (31%), Positives = 129/245 (52%), Gaps = 25/245 (10%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSIN---GLAP--VVRGEVLVDTDKG 93
YG A+ +L+ + EI L+G SG GKST LR++N L P + G V +
Sbjct: 15 YGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQ-- 72
Query: 94 FVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEH 153
N YA + +V+ +LR V MVFQQ P+ ++ NV GL + D K+ + E
Sbjct: 73 --NIYAPNEDVV-QLRKQ-VGMVFQQPNPFPF-SIYENVIYGLRLAGVKD---KAVLDEA 124
Query: 154 LE--IVNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIR 205
+E + W + K ++ LSGG +QRV AR A ++L+DEP S+LDP+
Sbjct: 125 VETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISS 184
Query: 206 MRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCY 265
++++ LL L+ + TI+ V+H +++A R+ ++ A G +I+ +++ L+P
Sbjct: 185 TQIENMLLELRDQY--TIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFLNPKEKE 242
Query: 266 VSEFI 270
++I
Sbjct: 243 TEDYI 247
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 101 bits (254), Expect = 2e-22
Identities = 80/248 (32%), Positives = 126/248 (50%), Gaps = 38/248 (15%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPV-----VRGEVLVDTDKG 93
YG AV NL ++ + +G SG GKST+LR++N + V V GEVL+D +
Sbjct: 14 YGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGE-- 71
Query: 94 FVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKS----R 149
+ Y + + R T+ MVFQ+ P ++ NV GL+ + V K
Sbjct: 72 --DLYGPGVDPVAVRR--TIGMVFQRPNPFPTMSIRDNVVAGLK---LNGVRNKKDLDEL 124
Query: 150 VAEHLEIVNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPL 203
V + L NL W + K + LSGG +QR+ ARA A +LLMDEP S+LDP+
Sbjct: 125 VEKSLRGANL--WNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPI 182
Query: 204 IRMRLQDELLALQRKLKK--TIVFVSHDINEAFRLGNRIAI--MEG----GRIIQCGTPQ 255
+ ++D L +LK+ TIV V+H++ +A R+ ++ A +E GR+++ +
Sbjct: 183 STLAIED----LINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTE 238
Query: 256 EIILHPAN 263
+I +P
Sbjct: 239 KIFSNPTQ 246
>gnl|CDD|184589 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 101 bits (254), Expect = 2e-22
Identities = 73/246 (29%), Positives = 128/246 (52%), Gaps = 27/246 (10%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSIN---GLAPVVR--GEVLVDTDKG 93
YG AV +++++K + L+G SG GKST LRSIN L P R GE+L +
Sbjct: 31 YGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG--- 87
Query: 94 FVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEH 153
+N ++ NV+ R + MVFQ+ P +++ N+ L++ ER+ V +
Sbjct: 88 -LNILDSNINVVNLRR--EIGMVFQKPNPFP-KSIYNNITHALKYAG----ERRKSVLDE 139
Query: 154 LEIVNLTK---WADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLI 204
+ +LTK W + K + LSGG +QR+ AR A +LL+DEP S+LDP+
Sbjct: 140 IVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPIS 199
Query: 205 RMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANC 264
++++ + L+ + +I+ V+H++ +A R+ +R A G +++ ++I P
Sbjct: 200 NAKIEELITELKEEY--SIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFTSPKQQ 257
Query: 265 YVSEFI 270
++I
Sbjct: 258 KTEDYI 263
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 101 bits (254), Expect = 2e-22
Identities = 69/196 (35%), Positives = 95/196 (48%), Gaps = 4/196 (2%)
Query: 50 LEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLR 109
L VK+GE + L+G SG+GKSTLL + GL GEV + + D KLR
Sbjct: 31 LVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQ----PLHQMDEEARAKLR 86
Query: 110 MHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKINM 169
V VFQ F L+P NVEL + ++ LE + L K D
Sbjct: 87 AKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQ 146
Query: 170 LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSHD 229
LSGG +QRV ARAF +L DEP +LD ++ D L +L R+ T++ V+HD
Sbjct: 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHD 206
Query: 230 INEAFRLGNRIAIMEG 245
+ A R R+ ++ G
Sbjct: 207 LQLAARCDRRLRLVNG 222
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 101 bits (252), Expect = 3e-22
Identities = 79/239 (33%), Positives = 123/239 (51%), Gaps = 31/239 (12%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLR---SINGLAPVVR--GEVLVDTDKG 93
YG A+ ++E+++ ++ +G SG GKST LR +N L P R GE+ +D
Sbjct: 13 YGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGR-- 70
Query: 94 FVNPYAADANV--LRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVER-KSRV 150
N Y V LRK V MVFQ+ P +++ NV GL + D + RV
Sbjct: 71 --NIYDKGVQVDELRK----NVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRV 123
Query: 151 AEHLEIVNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLI 204
E L+ L W + K + LSGG +QR+ ARA A +LLMDEP S+LDP+
Sbjct: 124 EETLKGAAL--WDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPIS 181
Query: 205 RMRLQDELLALQRKLKK--TIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHP 261
++++ L +LKK TIV V+H++ +A R+ ++ A G +++ ++I +P
Sbjct: 182 TAKVEE----LIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTNP 236
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 100 bits (251), Expect = 4e-22
Identities = 76/237 (32%), Positives = 121/237 (51%), Gaps = 29/237 (12%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVV-----RGEVLVDTDKGFVNPYAADAN 103
N++ + +I ++G SG GKSTLLR++N + +V G VL+D + N Y+ + +
Sbjct: 24 NMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNE----NIYSPNLD 79
Query: 104 V--LRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTK 161
V LRK V MVFQQ P +++ NV G L R V E +
Sbjct: 80 VVNLRK----RVGMVFQQPNPFP-KSIFDNVAFGPRMLGTTAQSRLDEVVEK-SLRQAAL 133
Query: 162 WADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLAL 215
W + K N+ LSGG +QR+ AR A ++LMDEP S+LDP+ MR+++ L
Sbjct: 134 WDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEE----L 189
Query: 216 QRKLKK--TIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFI 270
++LK+ TI V+H++ +A R + + G +++ G EI P + ++I
Sbjct: 190 MQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSRPRDKRTEDYI 246
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 100 bits (251), Expect = 4e-22
Identities = 71/217 (32%), Positives = 112/217 (51%), Gaps = 9/217 (4%)
Query: 44 AVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADAN 103
A+ +LEVKKG L+G +G+GKSTLL+ +NGL G+V V V +
Sbjct: 21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGD---IVVSSTSKQK 77
Query: 104 VLRKLRMHTVSMVFQ-QFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTK- 161
++ +R V +VFQ + L TV ++V G + IP + + AE LE+V L
Sbjct: 78 EIKPVR-KKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADE 136
Query: 162 -WADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLK 220
W LSGG +RV A A +L++DEP + LDP R+ + +L +
Sbjct: 137 FWEKSPFE-LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMM-QLFESIHQSG 194
Query: 221 KTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257
+T+V V+H +++ + + ++E G II CGTP ++
Sbjct: 195 QTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown.
Length = 223
Score = 100 bits (251), Expect = 5e-22
Identities = 80/220 (36%), Positives = 112/220 (50%), Gaps = 33/220 (15%)
Query: 50 LEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLR 109
L KGE+L L+G +GAGK+TLLR+I GL P +G V V K
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVA------------GASPGKGW 48
Query: 110 MHTVSMVFQ--QFALLPWR---TVARNVELG----LEFLDIPDVERKSRVAEHLEIVNLT 160
H + V Q +FA W +VA V G + +L P V + V + L V LT
Sbjct: 49 RH-IGYVPQRHEFA---WDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLT 104
Query: 161 KWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLK 220
+ AD + LSGG +QRV ARA AT +LL+DEPF+ LD M Q+ L L +L
Sbjct: 105 ELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLD----MPTQELLTELFIELA 160
Query: 221 K---TIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257
I+ +HD+ +A +R+ ++ GR+I GTPQ++
Sbjct: 161 GAGTAILMTTHDLAQAMATCDRVVLLN-GRVIADGTPQQL 199
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 100 bits (250), Expect = 6e-22
Identities = 73/245 (29%), Positives = 128/245 (52%), Gaps = 25/245 (10%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSIN---GLAPVVR--GEVLVDTDKG 93
YG A+ NL + + E+ ++G SG GKST ++++N + P V+ GE+ +
Sbjct: 22 YGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSN- 80
Query: 94 FVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEH 153
+ D LRK + MVFQ+ P +++ NV G I + K ++ E
Sbjct: 81 -ILKGKVDLVELRK----NIGMVFQKGNPFP-QSIFDNVAYGPR---IHGTKNKKKLQEI 131
Query: 154 LE--IVNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIR 205
+E + ++ W + K + LSGG +QR+ ARA AT +LLMDEP S+LDP+
Sbjct: 132 VEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVST 191
Query: 206 MRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCY 265
++++ +L L K K TIV V+H++ +A R+ ++ A G +++C ++ +P +
Sbjct: 192 RKIEELILKL--KEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSNPDDQR 249
Query: 266 VSEFI 270
++I
Sbjct: 250 TLDYI 254
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 100 bits (250), Expect = 6e-22
Identities = 72/226 (31%), Positives = 110/226 (48%), Gaps = 18/226 (7%)
Query: 44 AVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGL-----APVVRGEVLVDTDKGFVNPY 98
A+ +L + GE++ L+G SG+GKSTLLR ++GL + E+L T V
Sbjct: 19 ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRT----VQRE 74
Query: 99 AADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGL--------EFLDIPDVERKSRV 150
A +RK R +T +FQQF L+ +V NV +G E+K R
Sbjct: 75 GRLARDIRKSRANT-GYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRA 133
Query: 151 AEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQD 210
+ L V + +A +++ LSGG +QRV ARA A ++L DEP +SLDP + D
Sbjct: 134 LQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMD 193
Query: 211 ELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQE 256
L + + T+V H ++ A R RI + G + G+ Q+
Sbjct: 194 TLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQ 239
>gnl|CDD|184123 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 100 bits (250), Expect = 7e-22
Identities = 74/230 (32%), Positives = 113/230 (49%), Gaps = 10/230 (4%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPY 98
YG + V + V GE L+G +GAGKST+ R I G+ G++ V P
Sbjct: 51 YGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITV-----LGVPV 105
Query: 99 AADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVN 158
A A + R + +V Q L TV N+ + + + E ++ + LE
Sbjct: 106 PARARLARA----RIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFAR 161
Query: 159 LTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRK 218
L AD +++ LSGGMK+R+ ARA +L++DEP + LDP R + + L +L +
Sbjct: 162 LESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLAR 221
Query: 219 LKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSE 268
KTI+ +H + EA RL +R+ ++E GR I G P +I C V E
Sbjct: 222 -GKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDEHIGCQVIE 270
>gnl|CDD|182444 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 99.8 bits (249), Expect = 9e-22
Identities = 67/206 (32%), Positives = 103/206 (50%), Gaps = 11/206 (5%)
Query: 50 LEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEV-LVDTDKGFVNPYAADANVLRKL 108
L +K GE + L+G SG GKSTL R + GL +G V +N A R+
Sbjct: 33 LSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLN--RAQRKAFRR- 89
Query: 109 RMHTVSMVFQQF--ALLPWRTVARNVELGLEFL-DIPDVERKSRVAEHLEIVNLT-KWAD 164
+ MVFQ A+ P +TV + L L + ER +R +E L V+L D
Sbjct: 90 ---DIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLD 146
Query: 165 CKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIV 224
+ LSGG QRV ARA A +L++DE S+LD +++ + L LQ++ +
Sbjct: 147 KRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACL 206
Query: 225 FVSHDINEAFRLGNRIAIMEGGRIIQ 250
F++HD+ R R+ +M+ G+I++
Sbjct: 207 FITHDLRLVERFCQRVMVMDNGQIVE 232
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 99 bits (249), Expect = 9e-22
Identities = 72/234 (30%), Positives = 116/234 (49%), Gaps = 22/234 (9%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRG-----EVLVDTDKG 93
YG A+ NL + ++ L+G SG GKSTLLR +N + ++ G ++ +D +
Sbjct: 13 YGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDI 72
Query: 94 FVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEH 153
+ N AD LR+ V MVFQ+ P ++ NV GL I D + V E
Sbjct: 73 YGNIDVAD------LRIK-VGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVER 124
Query: 154 LEIVNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMR 207
+ W + K + LSGG +QR+ AR A ++LMDEP S+LDP+ +
Sbjct: 125 -SLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHK 183
Query: 208 LQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHP 261
+++ + L++ TIV V+H + +A R+ +R A G +++ Q I +P
Sbjct: 184 IEELMEELKKNY--TIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFSNP 235
>gnl|CDD|184192 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 99.7 bits (249), Expect = 1e-21
Identities = 61/213 (28%), Positives = 112/213 (52%), Gaps = 16/213 (7%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
+ E+ +GE + ++G +G+GKST+ + + GL GE+ +D L+++
Sbjct: 29 SFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDG-------ITISKENLKEI 81
Query: 109 RMHTVSMVFQ----QFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWAD 164
R + ++FQ QF TV ++ GLE +P + K + + + V + + D
Sbjct: 82 RKK-IGIIFQNPDNQFIGA---TVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLD 137
Query: 165 CKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIV 224
+ LSGG KQRV A A I++ DE S LDP + ++ ++ L++ KKT++
Sbjct: 138 KEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLI 197
Query: 225 FVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257
++HD++EA L +++ + G++I G P+EI
Sbjct: 198 SITHDMDEAI-LADKVIVFSEGKLIAQGKPKEI 229
>gnl|CDD|184592 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 99.1 bits (247), Expect = 1e-21
Identities = 75/246 (30%), Positives = 127/246 (51%), Gaps = 28/246 (11%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGL-----APVVRGEVLVDTDKG 93
YG A+ ++++ + ++ ++G SG GKST LR IN + A V GE+
Sbjct: 49 YGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGK-- 106
Query: 94 FVNPYAADAN--VLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVA 151
N Y AD + LR+ + MVFQ+ P +++ NV GL+ D + RV
Sbjct: 107 --NVYDADVDPVALRR----RIGMVFQKPNPFP-KSIYDNVAYGLKIQGY-DGDIDERVE 158
Query: 152 EHLEIVNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIR 205
E L L W + K + LSGG +QR+ ARA A ++LMDEP S+LDP+
Sbjct: 159 ESLRRAAL--WDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVAT 216
Query: 206 MRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAI-MEGGRIIQCGTPQEIILHPANC 264
+++D + L + T+V V+H++ +A R+ ++ A+ + GG +++ +I +P +
Sbjct: 217 SKIEDLIEELAEEY--TVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIFENPESQ 274
Query: 265 YVSEFI 270
V ++I
Sbjct: 275 RVEDYI 280
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 99.0 bits (246), Expect = 1e-21
Identities = 71/228 (31%), Positives = 114/228 (50%), Gaps = 13/228 (5%)
Query: 50 LEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNP--YAADANVLRK 107
+++ I +MG SG+GKSTLL+ +N L + ++ VD + + DA LRK
Sbjct: 31 IKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRK 90
Query: 108 LRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDV-ERKSRVAEHLEIVNLTKWADCK 166
V MVFQQ P ++ N+ L+ I + E K V E L V L K +
Sbjct: 91 ----EVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDR 146
Query: 167 IN----MLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKT 222
+N LSGG +QR+ ARA A +LLMDEP S +D + ++ + L+ ++
Sbjct: 147 LNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEI--A 204
Query: 223 IVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFI 270
IV VSH+ + R+ + +A + G +++ G+ EI P N +++
Sbjct: 205 IVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNELTEKYV 252
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 98.8 bits (247), Expect = 2e-21
Identities = 79/242 (32%), Positives = 113/242 (46%), Gaps = 60/242 (24%)
Query: 47 KANLEVKKGEILVLMGLSGAGKSTLLRSINGL-AP-----VVRGEVLVDTDKG-FVNPYA 99
NL + I + G SGAGK++L+ +I+GL P V+ G VL D +KG + P
Sbjct: 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPE- 74
Query: 100 ADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNL 159
R+ + VFQ L P V N+ G+ KS VA+ +IV L
Sbjct: 75 -----KRR-----IGYVFQDARLFPHYKVRGNLRYGM---------AKSMVAQFDKIVAL 115
Query: 160 ------------TKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMR 207
+ LSGG KQRV RA T +LLMDEP +SLD L R R
Sbjct: 116 LGIEPLLDRYPGS---------LSGGEKQRVAIGRALLTAPELLLMDEPLASLD-LPRKR 165
Query: 208 LQDELLA----LQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI----IL 259
ELL L R++ I++VSH ++E RL +R+ ++E G++ G +E+ +
Sbjct: 166 ---ELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSAM 222
Query: 260 HP 261
P
Sbjct: 223 RP 224
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina.
Length = 221
Score = 98.6 bits (246), Expect = 2e-21
Identities = 69/200 (34%), Positives = 103/200 (51%), Gaps = 5/200 (2%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
+L + KGEI+ ++G SG+GKSTLL + GL GEVL + + +N KL
Sbjct: 25 SLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNG----QSLSKLSSNERAKL 80
Query: 109 RMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKIN 168
R + ++Q LLP T NV + L E K R E LE V L + + +
Sbjct: 81 RNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPS 140
Query: 169 MLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSH 228
LSGG +QRV ARA ++L DEP +LD + D +L L R+L + + V+H
Sbjct: 141 ELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTH 200
Query: 229 DINEAFRLGNRIAIMEGGRI 248
D+ A +L +R+ M+ G++
Sbjct: 201 DLELAKKL-DRVLEMKDGQL 219
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 98.5 bits (246), Expect = 2e-21
Identities = 80/238 (33%), Positives = 118/238 (49%), Gaps = 27/238 (11%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSIN---GLAPVVR--GEVLVDTDKG 93
YG A+ NL++ K ++ +G SG GKSTLLR+ N L P R GE+L+D +
Sbjct: 23 YGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENI 82
Query: 94 FVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLE-FLDIPDVERKSRVAE 152
D +LR V MVFQ+ P ++ N+ G+ F + E RV
Sbjct: 83 LTPKQ--DIALLRA----KVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEW 135
Query: 153 HLEIVNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRM 206
L L W + K + LSGG +QR+ AR A +LL+DEP S+LDP+
Sbjct: 136 ALTKAAL--WNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTG 193
Query: 207 RLQDELLALQRKLKK--TIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPA 262
R++ EL+ +LK+ T+V V+H++ +A R + A M G +I+ G I PA
Sbjct: 194 RIE-ELIT---ELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIFTKPA 247
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This model does not recognize the highly
divergent NodI from Azorhizobium caulinodans.
Length = 303
Score = 98.1 bits (244), Expect = 3e-21
Identities = 73/230 (31%), Positives = 114/230 (49%), Gaps = 10/230 (4%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPY 98
YG V + + +GE L+G +GAGKST+ R + G+ RG++ V P
Sbjct: 14 YGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITV-----LGEPV 68
Query: 99 AADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVN 158
+ A + R + +V Q L P TV N+ + + + E ++ + LE
Sbjct: 69 PSRARLARV----AIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFAR 124
Query: 159 LTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRK 218
L AD ++ +LSGGMK+R+ ARA +L++DEP + LDP R + + L +L
Sbjct: 125 LESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLL-A 183
Query: 219 LKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSE 268
KTI+ +H + EA RL +R+ ++E GR I G P +I C V E
Sbjct: 184 RGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDEQIGCNVIE 233
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 97.0 bits (241), Expect = 6e-21
Identities = 75/248 (30%), Positives = 123/248 (49%), Gaps = 30/248 (12%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSIN---GLAPVVR--GEVLVDT--- 90
+G AV +++ + + ++G SG GKST+LRSIN L P R G++L+D
Sbjct: 14 FGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDI 73
Query: 91 -DKGFVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLD-IPDVERKS 148
D+G D +R+ V MVFQ+ P ++ NV G + + E
Sbjct: 74 YDRG------VDPVSIRR----RVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADE 123
Query: 149 RVAEHLEIVNLTKWADCKIN------MLSGGMKQRVGFARAFATGAPILLMDEPFSSLDP 202
V L+ V L W + K LSGG +QR+ AR A ++LMDEP S+LDP
Sbjct: 124 IVESSLKRVAL--WDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDP 181
Query: 203 LIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPA 262
+ +++++ L + K K TI+ V+H++ +A R+ + A G +++CG ++I P
Sbjct: 182 ISTLKIEE--LIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFTTPE 239
Query: 263 NCYVSEFI 270
++I
Sbjct: 240 KKQTEDYI 247
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 97.2 bits (242), Expect = 6e-21
Identities = 68/214 (31%), Positives = 111/214 (51%), Gaps = 15/214 (7%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
N+ +KKGE+ ++G +GAGKSTL +++NG+ G +L D P L KL
Sbjct: 26 NINIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDG-----KPIDYSRKGLMKL 80
Query: 109 RMHTVSMVFQQ-----FALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWA 163
R +V MVFQ F+ +V ++V G L +P+ E + RV L+ +
Sbjct: 81 R-ESVGMVFQDPDNQLFS----ASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLK 135
Query: 164 DCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTI 223
D + LS G K+RV A +L++DEP + LDP+ + L+ +Q++L TI
Sbjct: 136 DKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTI 195
Query: 224 VFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257
+ +HDI+ + + +M+ GR+I G P+E+
Sbjct: 196 IIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 229
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 96.2 bits (240), Expect = 1e-20
Identities = 74/243 (30%), Positives = 117/243 (48%), Gaps = 35/243 (14%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVV-----RGEVLVDTDKG 93
YG A+ ++ + K + +G SG GKSTLLR N + +V GE+ +D
Sbjct: 35 YGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQN- 93
Query: 94 FVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPD-------VER 146
+ D LR+ V MVFQ+ P +++ NV GL I + VER
Sbjct: 94 -IYDKKVDVAELRR----RVGMVFQRPNPFP-KSIYENVVYGLRLQGINNRRVLDEAVER 147
Query: 147 KSRVAEHLEIVNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSL 200
R A W + K + LSGG +QR+ ARA A +LL+DEP S+L
Sbjct: 148 SLRGA--------ALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSAL 199
Query: 201 DPLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILH 260
DP+ +++++ + L+ K TIV V+H++ +A R+ + A M G++++ G +
Sbjct: 200 DPISTLKIEELITELKSKY--TIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLFTS 257
Query: 261 PAN 263
PA
Sbjct: 258 PAK 260
>gnl|CDD|163042 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit.
Unfortunately, the gene symbol nomenclature adopted
based on this operon in B. subtilis assigns cydC to the
third gene in the operon where this gene is actually
homologous to the E. coli cydD gene. We have chosen to
name all homologs in this family in accordance with the
precedence of publication of the E. coli name, CydD.
Length = 529
Score = 96.2 bits (240), Expect = 1e-20
Identities = 64/198 (32%), Positives = 91/198 (45%), Gaps = 16/198 (8%)
Query: 44 AVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADAN 103
A+ + V GE + L+G SGAGKSTLL + G G + V+ V ADA+
Sbjct: 337 ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNG----VPLADADAD 392
Query: 104 VLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVN-LTKW 162
R ++ V Q L T+A N+ L ++ R A E V L +
Sbjct: 393 SWRD----QIAWVPQHPFLFA-GTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQG 447
Query: 163 ADCKI----NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRK 218
D I LSGG QR+ ARAF AP+LL+DEP + LD + + L AL +
Sbjct: 448 LDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQ- 506
Query: 219 LKKTIVFVSHDINEAFRL 236
+T++ V+H + A R
Sbjct: 507 -GRTVLLVTHRLALAERA 523
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 95.5 bits (237), Expect = 2e-20
Identities = 78/253 (30%), Positives = 129/253 (50%), Gaps = 33/253 (13%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPY 98
YG AV +++ ++K EI +G SG GKST+LRS+N + +V+G +G V+
Sbjct: 18 YGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRF----EGHVHFL 73
Query: 99 AAD---ANVLRKLRMHTVSMVFQQ---FALLPWRTVARNVELGLEFLDIPDVERKSRVAE 152
D V + + MVFQQ F++ ++ NV GL L+ + RV
Sbjct: 74 GQDVYGKGVDPVVVRRYIGMVFQQPNPFSM----SIFDNVAFGLR-LNRYKGDLGDRVKH 128
Query: 153 HLEIVNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRM 206
L+ L W + K + LSGG +QR+ ARA AT +LL+DEP S+LDP+
Sbjct: 129 ALQGAAL--WDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATR 186
Query: 207 RLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIA-----IMEGGR---IIQCGTPQEII 258
R+++ ++ L++ TI V+H++ +A R+ + A I +G R +++ G +I
Sbjct: 187 RVEELMVELKKDY--TIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIF 244
Query: 259 LHPANCYVSEFIQ 271
+P S++I
Sbjct: 245 QNPREQLTSDYIS 257
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 95.4 bits (237), Expect = 2e-20
Identities = 73/223 (32%), Positives = 113/223 (50%), Gaps = 16/223 (7%)
Query: 44 AVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADAN 103
A+ NL +KKGE + ++G +G+GKSTL +NGL +G+VLV G D +
Sbjct: 17 ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLV---SGI---DTGDFS 70
Query: 104 VLRKLRMHTVSMVFQ----QFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNL 159
L+ +R V +VFQ QF RTV ++ G E L +P +E + RV L + L
Sbjct: 71 KLQGIR-KLVGIVFQNPETQFV---GRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGL 126
Query: 160 TKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKL 219
K+ LSGG Q V A L+ DE S LDP + + + + L K
Sbjct: 127 EKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEK- 185
Query: 220 KKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPA 262
KTIV+++H++ E +RI +M+ G+I+ G P+ ++ +
Sbjct: 186 GKTIVYITHNLEE-LHDADRIIVMDRGKIVLEGEPENVLSDVS 227
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 95.5 bits (237), Expect = 2e-20
Identities = 71/235 (30%), Positives = 124/235 (52%), Gaps = 18/235 (7%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANV-LRK 107
++E+ + ++ ++G SG GKST L+ +N + + EV V+ F N + V L +
Sbjct: 27 SMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNEL-ESEVRVEGRVEFFNQNIYERRVNLNR 85
Query: 108 LRMHTVSMVFQQFALLPWRTVARNVELGLEFLDI-PDVERKSRVAEHLEIVNLTKWADCK 166
LR VSMV + L P +V NV G++ + P +E V L+ +L W + K
Sbjct: 86 LRRQ-VSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADL--WDEIK 141
Query: 167 INM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLK 220
+ LSGG +QR+ ARA A +LLMDEP LDP+ M+++ + +L+ + +
Sbjct: 142 HKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSE 201
Query: 221 KTIVFVSHDINEAFRLGNRIAIMEG-----GRIIQCGTPQEIILHPANCYVSEFI 270
T+V VSH++++ RL + A +G G++++ G ++I P + E++
Sbjct: 202 LTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKKIFNSPHDSRTREYV 256
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 95.1 bits (236), Expect = 3e-20
Identities = 70/254 (27%), Positives = 129/254 (50%), Gaps = 18/254 (7%)
Query: 29 SIKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLV 88
+IK D Y A+ ++++ + ++ ++G SG GKST ++++N ++ + G V V
Sbjct: 7 AIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISEL-EGPVKV 65
Query: 89 DTDKGFV--NPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFL-DIPDVE 145
+ F N Y N+ R R + MVFQ+ P ++ NV G+ +P +
Sbjct: 66 EGVVDFFGQNIYDPRININRLRRQ--IGMVFQRPNPFPM-SIYENVAYGVRISAKLPQAD 122
Query: 146 RKSRVAEHLEIVNLTKWADCKINM----LSGGMKQRVGFARAFATGAPILLMDEPFSSLD 201
V L+ L + K+N LSGG +QR+ ARA A +LLMDEP S+LD
Sbjct: 123 LDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALD 182
Query: 202 PLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEG-----GRIIQCGTPQE 256
P+ M++++ + +L+ +L TI V+H++ +A R+ + A G++++ G +
Sbjct: 183 PIATMKVEELIHSLRSEL--TIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQ 240
Query: 257 IILHPANCYVSEFI 270
I +P + +++
Sbjct: 241 IFSNPLDSRTRDYV 254
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 94.9 bits (236), Expect = 3e-20
Identities = 70/262 (26%), Positives = 120/262 (45%), Gaps = 37/262 (14%)
Query: 1 MNDCAVKFRDVDIVFGETSNKIRKRSRYSIKKHDKVSEYGMVSAVIKANLEVKKGEILVL 60
M D V+F+ V + ++ A+ + + +G L
Sbjct: 1 MKDNIVEFKHVSFTYPDSK----------------------KPALNDISFSIPRGSWTAL 38
Query: 61 MGLSGAGKSTLLRSING-LAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMHTVSMVFQ- 118
+G +G+GKST+ + ING L P + D + A + +R V +VFQ
Sbjct: 39 IGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLT-----AKTVWDIR-EKVGIVFQN 92
Query: 119 ---QFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKINMLSGGMK 175
QF TV +V GLE +P E V + L V + + D + LSGG K
Sbjct: 93 PDNQFV---GATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQK 149
Query: 176 QRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSHDINEAFR 235
QRV A A I+++DE S LDP + ++ + L++K T++ ++HDI+EA
Sbjct: 150 QRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEA-N 208
Query: 236 LGNRIAIMEGGRIIQCGTPQEI 257
+ +++ +++ G+++ G+P EI
Sbjct: 209 MADQVLVLDDGKLLAQGSPVEI 230
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 94.5 bits (235), Expect = 4e-20
Identities = 69/245 (28%), Positives = 127/245 (51%), Gaps = 25/245 (10%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSIN---GLAPVVR--GEVLVDTDKG 93
YG A+ NL++ + E+ ++G SG GKST ++++N L P V+ G++L
Sbjct: 34 YGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNI 93
Query: 94 FVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEH 153
F Y+ + +LR + V MVFQ+ P +++ NV G + I D + + E
Sbjct: 94 FDKSYSVE-----ELRTN-VGMVFQKPNPFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEK 146
Query: 154 LEIVNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMR 207
+ W + K + LSGG +QR+ AR A ++LMDEP S+LDP+ ++
Sbjct: 147 -SLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLK 205
Query: 208 LQDELLALQRKLKK--TIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCY 265
+++ L ++LKK +I+ V+H++ +A R+ ++ A G + + +I +P++
Sbjct: 206 VEE----LVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSNPSDKR 261
Query: 266 VSEFI 270
++I
Sbjct: 262 TEDYI 266
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 94.1 bits (234), Expect = 5e-20
Identities = 67/214 (31%), Positives = 104/214 (48%), Gaps = 18/214 (8%)
Query: 53 KKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMHT 112
+ I V+ G +GAGKSTL R NG+ G VL+ + N+ R++R
Sbjct: 29 RNSRIAVI-GPNGAGKSTLFRHFNGILKPTSGSVLIRGEP------ITKENI-REVR-KF 79
Query: 113 VSMVFQQ-----FALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKI 167
V +VFQ F+ TV +++ G L + + RV+ L ++ L + D
Sbjct: 80 VGLVFQNPDDQIFS----PTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP 135
Query: 168 NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVS 227
+ LSGG K+RV A A +L++DEP + LDP L D L L T++F +
Sbjct: 136 HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFST 195
Query: 228 HDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHP 261
H ++ + + I +M+ GRI+ GT +EI L P
Sbjct: 196 HQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQP 229
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 93.7 bits (233), Expect = 6e-20
Identities = 73/215 (33%), Positives = 104/215 (48%), Gaps = 27/215 (12%)
Query: 55 GEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVL-RKLRMHTV 113
G + L+G +G+GKSTLLR + G G V + D + L R+ R V
Sbjct: 27 GSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLA---------GVDLHGLSRRARARRV 77
Query: 114 SMVFQQFALLPWRTVARNVELG------LEFLDIP-DVERKSRVAEHLEIVNLTKWADCK 166
++V Q TV V LG L D P D V L L+ AD
Sbjct: 78 ALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAV---VDRALARTELSHLADRD 134
Query: 167 INMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKK---TI 223
++ LSGG +QRV ARA A +LL+DEP + LD +R Q E LAL R+L T+
Sbjct: 135 MSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLD----VRAQLETLALVRELAATGVTV 190
Query: 224 VFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEII 258
V HD+N A + + +++GGR++ G P+E++
Sbjct: 191 VAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL 225
>gnl|CDD|182443 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 93.6 bits (233), Expect = 6e-20
Identities = 64/224 (28%), Positives = 105/224 (46%), Gaps = 21/224 (9%)
Query: 48 ANLEVKKGEILVLMGLSGAGKS-TLLRSINGLAPVVR---GEVLVDTDKGFVNPYAADAN 103
+L +++G +L L+G SG+GKS T ++ L VR G VL+D P A A
Sbjct: 22 VSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGK-----PVAPCA- 75
Query: 104 VLRKLRMHTVSMVFQ--QFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLT- 160
LR ++ + Q + A P T+ + L P + + LE V L
Sbjct: 76 ----LRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDA--TLTAALEAVGLEN 129
Query: 161 --KWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRK 218
+ +SGGM QR+ A A AP ++ DEP + LD + + R+ D L ++ +K
Sbjct: 130 AARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQK 189
Query: 219 LKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPA 262
++ V+HD+ RL + +A+M GRI++ G + + P
Sbjct: 190 RALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPK 233
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 93.7 bits (233), Expect = 6e-20
Identities = 70/224 (31%), Positives = 112/224 (50%), Gaps = 43/224 (19%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVV-----RGEVLVDTDKG 93
YG AV ++ +G++ L+G SG GKST+LRS+N + ++ +G VL D
Sbjct: 23 YGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDG--- 79
Query: 94 FVNPYAADAN---VLRKLRMHTVSMVFQQFALLPWRTVARNVELGLE---FLDIPD--VE 145
+ Y + V R+ + MVFQQ P +++ N+ G + D VE
Sbjct: 80 -TDLYDPRVDPVEVRRR-----IGMVFQQPNPFP-KSIYENIAFGARINGYTGDMDELVE 132
Query: 146 RKSRVAEHLEIVNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSS 199
R R A W +CK + LSGG +QR+ AR A ++LMDEP S+
Sbjct: 133 RSLRKA--------AVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSA 184
Query: 200 LDPLIRMRLQDELLALQRKLKK--TIVFVSHDINEAFRLGNRIA 241
LDP+ +++++ + +LKK TIV V+H++ +A R+ + A
Sbjct: 185 LDPISTLKIEETM----HELKKNFTIVIVTHNMQQAVRVSDMTA 224
>gnl|CDD|184581 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 93.3 bits (232), Expect = 8e-20
Identities = 73/240 (30%), Positives = 123/240 (51%), Gaps = 32/240 (13%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPV-----VRGEVLVDTDKG 93
YG A+ +L++ + + +G SG GKST LR +N + V G++ +D +
Sbjct: 29 YGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGE-- 86
Query: 94 FVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRV-AE 152
+ Y +V+ +LR V MVFQ+ P +++ NV G P + +R AE
Sbjct: 87 --DIYDPRLDVV-ELRAR-VGMVFQKPNPFP-KSIYENVAYG------PRIHGLARSKAE 135
Query: 153 HLEIV--NLTK---WADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLD 201
EIV +L K W + K + LSGG +QR+ ARA A ++LMDEP S+LD
Sbjct: 136 LDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALD 195
Query: 202 PLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHP 261
P+ ++++ + L++ TIV V+H + +A R+ R A G +++ G +++ +P
Sbjct: 196 PIATAKVEELIDELRQNY--TIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMFTNP 253
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 93.3 bits (231), Expect = 1e-19
Identities = 71/234 (30%), Positives = 120/234 (51%), Gaps = 23/234 (9%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRK- 107
NL++K+ ++ +G SG GKST LR++N L ++ G + +G + Y N K
Sbjct: 102 NLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGT----SHEGEI--YFLGTNTRSKK 155
Query: 108 ---LRMHT-VSMVFQQFALLPWR-TVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKW 162
L + T + MVFQ+ P+ ++ NV G I D + ++ E + + W
Sbjct: 156 ISSLELRTRIGMVFQKPT--PFEMSIFDNVAYGPRNNGINDRKILEKIVEK-SLKSAALW 212
Query: 163 ADCKI------NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQ 216
+ K N LSGG +QR+ ARA A +LLMDEP S+LDP+ ++++ +L L+
Sbjct: 213 DEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELK 272
Query: 217 RKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFI 270
+K +I+ V+H + +A R+ + G I + G + I +HP N ++I
Sbjct: 273 KKY--SIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHPKNKRTKDYI 324
>gnl|CDD|184194 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 93.2 bits (232), Expect = 1e-19
Identities = 64/217 (29%), Positives = 103/217 (47%), Gaps = 8/217 (3%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
N+ + G + ++G +G+GKSTLL+ +NGL G V + LRK
Sbjct: 27 NVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRK- 85
Query: 109 RMHTVSMVFQQF--ALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCK 166
V +VFQ F L TV +++ G + + + K + E +E+V L + +
Sbjct: 86 ---KVGIVFQ-FPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLAR 141
Query: 167 INM-LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVF 225
LSGG +RV A A +L++DEP + LDP R + + L ++ T V
Sbjct: 142 SPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVL 201
Query: 226 VSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPA 262
V+H + +A R ++I +M G + GTP+EI P
Sbjct: 202 VTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADPD 238
>gnl|CDD|163576 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification.
Length = 236
Score = 92.4 bits (230), Expect = 1e-19
Identities = 65/219 (29%), Positives = 106/219 (48%), Gaps = 10/219 (4%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPY 98
YG A+ + V+ GE + L+G +GAGKSTL + L G++ V P
Sbjct: 11 YGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPR 70
Query: 99 AADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVN 158
AA L +L +VFQQ L +V +N+ + E + R+A L +
Sbjct: 71 AA----LARL-----GVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLG 121
Query: 159 LTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRK 218
L + AD K+ L+GG ++RV ARA +LL+DEP LDP R + + AL R
Sbjct: 122 LAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRD 181
Query: 219 LKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257
++++ +H ++E +R+ ++ GR++ G E+
Sbjct: 182 QGLSVLWATHLVDEI-EADDRLVVLHRGRVLADGAAAEL 219
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 92.0 bits (228), Expect = 2e-19
Identities = 67/245 (27%), Positives = 120/245 (48%), Gaps = 25/245 (10%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFV--- 95
Y A+ N+++ K I L+G SG GKST LR++N + +V G + + +
Sbjct: 17 YTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEG---IKIEGNVIYEG 73
Query: 96 -NPYAADANVLRKLRMHTVSMVFQQ---FALLPWRTVARNVELGLEFLDIPDVERKSRVA 151
N Y+ + ++L R + MVFQ F + ++ N+ G + D ++ +
Sbjct: 74 KNIYSNNFDILELRR--KIGMVFQTPNPFLM----SIYDNISYGPKIHGTKDKKKLDEIV 127
Query: 152 EHLEIVNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIR 205
E + W + K + LSGG +QR+ AR A ++LMDEP S+LDP+
Sbjct: 128 EQ-SLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPIST 186
Query: 206 MRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCY 265
++++ ++ L+ TI+ V+H++ +A R+ +R A G I + + E+ +P N
Sbjct: 187 GKIEELIINLKESY--TIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFNPKNTK 244
Query: 266 VSEFI 270
E+I
Sbjct: 245 TEEYI 249
>gnl|CDD|183084 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 91.9 bits (229), Expect = 2e-19
Identities = 66/245 (26%), Positives = 121/245 (49%), Gaps = 14/245 (5%)
Query: 30 IKKHDKVSE-----YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRG 84
+KKH V +V A+ + +++G+ L ++G SG GKSTL R + + G
Sbjct: 11 LKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGG 70
Query: 85 EVLVDTDKGFVNPYAADANVLRKLRMHTVSMVFQQ-FALL-PWRTVARNVELGLEF-LDI 141
E+ A +KL + +VFQ + L P + V + +E L +
Sbjct: 71 ELYYQGQDLLKADPEA-----QKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSL 125
Query: 142 PDVERKSRVAEHLEIVNL-TKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSL 200
ER+ + + V L + D +M SGG +QR+ ARA +++ DEP S+L
Sbjct: 126 SAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSAL 185
Query: 201 DPLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILH 260
D ++ ++ + ++ LQ++L + VF+SHD++ + + + +M GR ++ GT ++I +
Sbjct: 186 DVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNN 245
Query: 261 PANCY 265
P + Y
Sbjct: 246 PRHPY 250
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 91.4 bits (227), Expect = 3e-19
Identities = 67/234 (28%), Positives = 113/234 (48%), Gaps = 21/234 (8%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLR---SINGLAPVVR--GEVLVDTDKG 93
YG A+ + + K + L+G SG GKSTLLR +N L P R G++L + +
Sbjct: 16 YGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGEN- 74
Query: 94 FVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEH 153
+ AD LR+ + MVFQ+ P +++ NV G + + + E
Sbjct: 75 -IMDSGADVVALRR----KIGMVFQRPNPFP-KSIYENVAYGPRIHGEKNKKTLDTIVEK 128
Query: 154 LEIVNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMR 207
+ W + K + LSGG +QR+ AR A ++LMDEP S+LDP+ +
Sbjct: 129 -SLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAK 187
Query: 208 LQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHP 261
++D L K + T++ V+H++ +A R+ + M G++I+ +I +P
Sbjct: 188 IED--LIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFENP 239
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 91.3 bits (226), Expect = 4e-19
Identities = 75/230 (32%), Positives = 117/230 (50%), Gaps = 19/230 (8%)
Query: 32 KHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTD 91
K++K S+ ++ V + + KGE + ++G +G+GKST R I+GL G+V +D +
Sbjct: 13 KYEKESDVNQLNGV---SFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGE 69
Query: 92 KGFVNPYAADANVLRKLRMHTVSMVFQ----QFALLPWRTVARNVELGLEFLDIPDVERK 147
A + LR + MVFQ QF TV +V G+E IP E
Sbjct: 70 L-------LTAENVWNLR-RKIGMVFQNPDNQFV---GATVEDDVAFGMENQGIPREEMI 118
Query: 148 SRVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMR 207
RV E L VN+ + + LSGG KQRV A A I+++DE S LDP R
Sbjct: 119 KRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQE 178
Query: 208 LQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257
+ + ++ K + T++ ++HD++EA +RI +M+ G II+ P E+
Sbjct: 179 IMRVIHEIKEKYQLTVLSITHDLDEAAS-SDRILVMKAGEIIKEAAPSEL 227
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 91.0 bits (226), Expect = 4e-19
Identities = 67/241 (27%), Positives = 111/241 (46%), Gaps = 35/241 (14%)
Query: 29 SIKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLV 88
SI+ YG +A+ + + E +KG I+ +G +GAGKST ++ I G P G V V
Sbjct: 2 SIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQV 61
Query: 89 DTDKGFVNPYAADANVLRKLRMHT---VSMVFQQFALLPWRTVARNVELGLEFL----DI 141
+ NP N + L H + M +++ L+F+ +
Sbjct: 62 CGEDVLQNPKEVQRN-IGYLPEHNPLYLDMYVREY---------------LQFIAGIYGM 105
Query: 142 PDVERKSRVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLD 201
K RV E +E+V L KI LS G +QRVG A+A +L++DEP + LD
Sbjct: 106 KGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLD 165
Query: 202 PLIRMRLQDELLALQRKLK-----KTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQE 256
P ++L+ ++ +K KTI+ +H + E + +R+ I+ G+I+ E
Sbjct: 166 P-------NQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDE 218
Query: 257 I 257
+
Sbjct: 219 L 219
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 90.8 bits (225), Expect = 4e-19
Identities = 64/222 (28%), Positives = 115/222 (51%), Gaps = 17/222 (7%)
Query: 44 AVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADAN 103
A+ +L KK ++ ++G +G+GKST+++ NGL ++ +T + V YA AN
Sbjct: 26 ALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGL-------IISETGQTIVGDYAIPAN 78
Query: 104 V-----LRKLRMHTVSMVFQ--QFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEI 156
+ +++LR + +VFQ ++ L T+ +++ G L E +V E L++
Sbjct: 79 LKKIKEVKRLR-KEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNLGENKQEAYKKVPELLKL 136
Query: 157 VNLTK-WADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLAL 215
V L + + LSGG K+RV A A L++DEP LDP + L
Sbjct: 137 VQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERL 196
Query: 216 QRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257
++ KK I+ V+H++++ R+ + + +M G++I G+P EI
Sbjct: 197 NKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEI 238
>gnl|CDD|184126 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 90.7 bits (226), Expect = 5e-19
Identities = 57/174 (32%), Positives = 77/174 (44%), Gaps = 25/174 (14%)
Query: 45 VIKANL--EVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADA 102
V+ + L + GE LVL G +G+GK+TLLR I GL P G + +D A
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAE-- 73
Query: 103 NVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKW 162
H + + A+ P TVA N+E FL + +A LE V L
Sbjct: 74 ------ACHYLG---HRNAMKPALTVAENLEFWAAFLG----GEELDIAAALEAVGLAPL 120
Query: 163 ADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDP--------LIRMRL 208
A LS G K+RV AR + PI ++DEP ++LD LIR L
Sbjct: 121 AHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHL 174
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 90.6 bits (225), Expect = 5e-19
Identities = 61/229 (26%), Positives = 110/229 (48%), Gaps = 21/229 (9%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPY 98
+G V A+ NL V GEI L+G +GAGKSTL++ ++G+ +G + ++ + +
Sbjct: 15 FGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITIN-NINYNKLD 73
Query: 99 AADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGL----EFLDIPDV---ERKSRVA 151
A L + +++Q+ +++ TV N+ +G + + + E + R A
Sbjct: 74 HKLAAQL------GIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAA 127
Query: 152 EHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDE 211
L V L D K+ LS KQ + A+ A +++MDEP SSL + D
Sbjct: 128 MMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTN----KEVDY 183
Query: 212 LLALQRKLK---KTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257
L + +L+ IV++SH + E R+ +R +M+ G + G ++
Sbjct: 184 LFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV 232
Score = 54.4 bits (131), Expect = 4e-08
Identities = 56/254 (22%), Positives = 106/254 (41%), Gaps = 35/254 (13%)
Query: 11 VDIVFGETSNKIRKRSRYSIKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKST 70
V + ET ++R + KK +S V +GEIL GL G+G++
Sbjct: 257 VSNLAHETVFEVRNVTSRDRKKVRDIS------------FSVCRGEILGFAGLVGSGRTE 304
Query: 71 LLRSINGLAPVVRGEVLVD-TDKGFVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVA 129
L+ + G+ GE+ ++ D +P A K M ++ + P ++A
Sbjct: 305 LMNCLFGVDKRAGGEIRLNGKDISPRSPLDA-----VKKGMAYITESRRDNGFFPNFSIA 359
Query: 130 RNVEL----------GLEFLDIPDVERKSRVAEHLEIVNLTKWADCKINMLSGGMKQRVG 179
+N+ + G L E+++ + + + I LSGG +Q+V
Sbjct: 360 QNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVL 419
Query: 180 FARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLK---KTIVFVSHDINEAFRL 236
++ +++ DEP +D + + E+ + R+L K I+ VS ++ E +
Sbjct: 420 ISKWLCCCPEVIIFDEPTRGID----VGAKAEIYKVMRQLADDGKVILMVSSELPEIITV 475
Query: 237 GNRIAIMEGGRIIQ 250
+RIA+ GR+ Q
Sbjct: 476 CDRIAVFCEGRLTQ 489
>gnl|CDD|162807 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se.
Length = 253
Score = 89.1 bits (221), Expect = 1e-18
Identities = 66/232 (28%), Positives = 100/232 (43%), Gaps = 5/232 (2%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPY 98
YG + ++ GE+L ++G SG+GKSTLL + G G G
Sbjct: 13 YGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELEL 72
Query: 99 AADANVLRKLRMHTVSMVFQQFALLPWR-TVARNVELGLEFLDIPDVER-KSRVAEH--L 154
+ R+ M T Q R V+ +G + I R A H L
Sbjct: 73 YQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWL 132
Query: 155 EIVNLTK-WADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELL 213
E V + D SGGM+QR+ AR T ++ MDEP LD ++ RL D L
Sbjct: 133 EEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLR 192
Query: 214 ALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCY 265
L R L ++ V+HD+ A L R+ +M+ GR+++ G +++ P + Y
Sbjct: 193 GLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDDPQHPY 244
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 89.0 bits (221), Expect = 2e-18
Identities = 60/203 (29%), Positives = 95/203 (46%), Gaps = 4/203 (1%)
Query: 43 SAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADA 102
+ +L V GE + L G SGAGKSTLL+S+ G +LV + +V+ A
Sbjct: 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81
Query: 103 NVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTK- 161
+ ++R T+ V Q ++P + V L +P ++R E L +N+ +
Sbjct: 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPER 141
Query: 162 -WADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLK 220
W SGG +QRV AR F PILL+DEP +SLD R + EL+A +
Sbjct: 142 LW-HLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVV-ELIAEAKARG 199
Query: 221 KTIVFVSHDINEAFRLGNRIAIM 243
++ + HD + +R+ +
Sbjct: 200 AALIGIFHDEEVRELVADRVMDV 222
>gnl|CDD|163250 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity.
Length = 230
Score = 88.7 bits (221), Expect = 2e-18
Identities = 62/207 (29%), Positives = 98/207 (47%), Gaps = 13/207 (6%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD-TDKGFVNPYAADANVLRK 107
+LEV KGE+ ++G +G GK+TLL+++ GL PV G + +D D + +
Sbjct: 20 SLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGED---ITKLPPHERA--R 74
Query: 108 LRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVN-LTKWADCK 166
+ V + F L TV N+ GL L P RK E E+ L + +
Sbjct: 75 AGIAYVPQGREIFPRL---TVEENLLTGLAAL--PRRSRK-IPDEIYELFPVLKEMLGRR 128
Query: 167 INMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFV 226
LSGG +Q++ ARA T +LL+DEP + P I + + L+ + I+ V
Sbjct: 129 GGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLV 188
Query: 227 SHDINEAFRLGNRIAIMEGGRIIQCGT 253
++ A L +R +ME GR++ G
Sbjct: 189 EQYLDFARELADRYYVMERGRVVASGA 215
>gnl|CDD|184201 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 88.7 bits (220), Expect = 2e-18
Identities = 70/243 (28%), Positives = 121/243 (49%), Gaps = 20/243 (8%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGF-VNPYAADANVLRK 107
+ E+++G + L+G +G+GKSTL++ N L G + + G+ + P + N L+K
Sbjct: 27 SFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITI---AGYHITPETGNKN-LKK 82
Query: 108 LRMHTVSMVFQQF--ALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNL-TKWAD 164
LR VS+VFQ F A L TV ++VE G + + E K + + L+ V L
Sbjct: 83 LR-KKVSLVFQ-FPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLIS 140
Query: 165 CKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIV 224
LSGG +RV A A IL +DEP + LDP R + Q+ T++
Sbjct: 141 KSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKA-GHTVI 199
Query: 225 FVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFIQKLN---PITALVA 281
V+H++++ + + ++E G++I+ +P+EI E+++K P T+ A
Sbjct: 200 LVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSDK------EWLKKHYLDEPATSRFA 253
Query: 282 ADV 284
+ +
Sbjct: 254 SKL 256
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease.
Length = 2272
Score = 88.5 bits (219), Expect = 2e-18
Identities = 71/240 (29%), Positives = 116/240 (48%), Gaps = 15/240 (6%)
Query: 30 IKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD 89
+K K+ E AV + N+ + +I +G +GAGK+T L + GL P G VLV
Sbjct: 931 VKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVG 990
Query: 90 TDKGFVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSR 149
+ + +R+ ++ M Q L TVA ++ + E +
Sbjct: 991 GKD-----IETNLDAVRQ----SLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLE 1041
Query: 150 VAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQ 209
+ LE L + + LSGGM++++ A AF A ++++DEP S +DP R +
Sbjct: 1042 MEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIW 1101
Query: 210 DELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEF 269
D L L+ + +TI+ +H ++EA LG+RIAI+ GR+ GTP L NC+ + F
Sbjct: 1102 D--LLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTP----LFLKNCFGTGF 1155
Score = 78.9 bits (194), Expect = 2e-15
Identities = 60/221 (27%), Positives = 99/221 (44%), Gaps = 24/221 (10%)
Query: 44 AVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADAN 103
AV + + V+ GE L+G++GAGK+T + + G V G DA
Sbjct: 1954 AVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSG----------------DAT 1997
Query: 104 VLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFL-------DIPDVERKSRVAEHLEI 156
V K + +S V Q P ++ G E L +P E + ++
Sbjct: 1998 VAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQS 2057
Query: 157 VNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQ 216
+ L+ +AD SGG K+++ A A P++L+DEP + +DP R L + ++++
Sbjct: 2058 LGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSII 2117
Query: 217 RKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257
R+ + +V SH + E L R+AIM G GT Q +
Sbjct: 2118 RE-GRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHL 2157
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 88.1 bits (219), Expect = 3e-18
Identities = 66/240 (27%), Positives = 107/240 (44%), Gaps = 47/240 (19%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEV------------ 86
YG + ++ GE+L ++G SG+GK+TLL +++ GEV
Sbjct: 16 YGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDL 75
Query: 87 ----------LVDTDKGFVNPYAADANVLRKLRMHTVSM---VFQQFALLPWRTVARNVE 133
L+ T+ GFV+ + D LRM VS + ++ + R
Sbjct: 76 YALSEAERRRLLRTEWGFVHQHPRDG-----LRM-QVSAGGNIGERLMAVGARHYGDIRA 129
Query: 134 LGLEFLDIPDVE-RKSRVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILL 192
++L+ VE +R+ D SGGM+QR+ AR T ++
Sbjct: 130 TAGDWLE--RVEIDAARI-------------DDLPTTFSGGMQQRLQIARNLVTHPRLVF 174
Query: 193 MDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCG 252
MDEP LD ++ RL D L L R+L +V V+HD+ A L +R+ +M+ GR+++ G
Sbjct: 175 MDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESG 234
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 87.5 bits (217), Expect = 4e-18
Identities = 66/220 (30%), Positives = 110/220 (50%), Gaps = 15/220 (6%)
Query: 44 AVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADAN 103
A+ NL ++ G +G +G+GKST+++ +NGL +G V VD D
Sbjct: 22 ALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81
Query: 104 VLRKLRMHTVSMVFQQFA--LLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTK 161
+RK V +VF QF L TV ++V G + + E ++ E L +V +++
Sbjct: 82 QIRK----KVGLVF-QFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISE 136
Query: 162 -WADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLK 220
+ LSGG +RV A A IL++DEP + LDP R EL+ L +KL
Sbjct: 137 SLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGR----KELMTLFKKLH 192
Query: 221 K---TIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257
+ TIV V+H +++ + + ++E G+++ G P++I
Sbjct: 193 QSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232
>gnl|CDD|139715 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 87.6 bits (217), Expect = 5e-18
Identities = 63/222 (28%), Positives = 104/222 (46%), Gaps = 15/222 (6%)
Query: 53 KKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLV---------DTDKGFVNPYAADAN 103
+K +I ++G SG+GKSTL+ NGL G + V + + NPY+
Sbjct: 50 EKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIK 109
Query: 104 VLRKLRMHTVSMVFQ--QFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNL-T 160
++LR VSMVFQ ++ L T+ +++ G L + E K +L + L
Sbjct: 110 NFKELR-RRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD 167
Query: 161 KWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLK 220
+ + LSGG K+RV A A IL+ DEP + LDP +L+ +
Sbjct: 168 SYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGE-HEMMQLILDAKANN 226
Query: 221 KTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPA 262
KT+ ++H + + + + +M+ G+I++ GTP EI
Sbjct: 227 KTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQH 268
>gnl|CDD|163239 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export.
Length = 694
Score = 87.2 bits (217), Expect = 6e-18
Identities = 73/228 (32%), Positives = 113/228 (49%), Gaps = 24/228 (10%)
Query: 40 GMVSAVIKA-NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD-TDKGFVNP 97
G + + +L ++ GE + ++G G+GKSTLL+ + GL G VL+D D ++P
Sbjct: 475 GQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDP 534
Query: 98 YAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIV 157
AD LR + V Q L + T+ N+ LG + D ++ R + +A E V
Sbjct: 535 --AD------LR-RNIGYVPQDPRLF-YGTLRDNIALGAPYADDEEILRAAELAGVTEFV 584
Query: 158 NL-TKWADCKIN----MLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDEL 212
D +I LSGG +Q V ARA PILL+DEP S++D R ++
Sbjct: 585 RRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMD----NRSEERF 640
Query: 213 L-ALQRKL-KKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEII 258
L+R L KT+V V+H L +RI +M+ GRI+ G +++
Sbjct: 641 KDRLKRWLAGKTLVLVTHR-TSLLDLVDRIIVMDNGRIVADGPKDQVL 687
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 87.1 bits (216), Expect = 7e-18
Identities = 61/204 (29%), Positives = 104/204 (50%), Gaps = 12/204 (5%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
+L++ GE++ ++G SG+GKSTL+ + L G V + DA+ L +L
Sbjct: 28 SLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRV----AGQDVATLDADALAQL 83
Query: 109 RMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKIN 168
R +FQ++ LL T A+NVE+ + + +R R E L+ + L + + +
Sbjct: 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPS 143
Query: 169 MLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKK---TIVF 225
LSGG +QRV ARA G ++L DEP +LD +E++A+ +L+ T++
Sbjct: 144 QLSGGQQQRVSIARALMNGGQVILADEPTGALDS----HSGEEVMAILHQLRDRGHTVII 199
Query: 226 VSHDINEAFRLGNRIAIMEGGRII 249
V+HD A + R+ + G I+
Sbjct: 200 VTHDPQVAAQ-AERVIEIRDGEIV 222
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes.
Length = 571
Score = 86.7 bits (215), Expect = 8e-18
Identities = 72/223 (32%), Positives = 109/223 (48%), Gaps = 28/223 (12%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
+L ++ GE + L+G SG+GKSTL+ I G++L+D AD L L
Sbjct: 352 SLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHD------LADYT-LASL 404
Query: 109 RMHTVSMVFQQFALLPWRTVARNVELG-LEFLDIPDVERKSRVAEHLEIVN-LTKWADCK 166
R V++V Q L T+A N+ G E D ++ER A + V+ L D
Sbjct: 405 RRQ-VALVSQDVVLFN-DTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTP 462
Query: 167 IN----MLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKT 222
I +LSGG +QR+ ARA APIL++DE S+LD +Q L L + +T
Sbjct: 463 IGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQ--GRT 520
Query: 223 IVFVSHDINEAFRL-----GNRIAIMEGGRIIQCGTPQEIILH 260
+ ++H RL +RI +M+ GRI++ GT E++
Sbjct: 521 TLVIAH------RLSTIEKADRIVVMDDGRIVERGTHNELLAR 557
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 86.4 bits (214), Expect = 9e-18
Identities = 81/289 (28%), Positives = 134/289 (46%), Gaps = 47/289 (16%)
Query: 16 GETSNKIRKRSR-YSIKKHDKVS------EYGMVSAVIKANLEVKKGEILVLMGLSGAGK 68
GE+ + R Y K+S YG A+ ++++ + + L+G SG GK
Sbjct: 25 GESDEQTRDEWTDYEFDGDAKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGK 84
Query: 69 STLLRSINGL-----APVVRGEVLVDTDKGFVNPYAADANV--LRKLRMHTVSMVFQQFA 121
ST LR +N + A + G V +D + Y N+ LRK V MVFQ
Sbjct: 85 STFLRCLNRMNDRIKAARIDGSVELDGQ----DIYQDGVNLVELRK----RVGMVFQSPN 136
Query: 122 LLPWRTVARNVELG--------------LEFLDIPD-----VERKSRVAEHLEIVNLTKW 162
P +++ N+ G L D D VER R A + VN +
Sbjct: 137 PFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVN-DRL 194
Query: 163 ADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKT 222
D + LSGG +QR+ AR A ++LMDEP S+LDP+ +++D + L + T
Sbjct: 195 DDNALG-LSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEY--T 251
Query: 223 IVFVSHDINEAFRLGNRIAI-MEGGRIIQCGTPQEIILHPANCYVSEFI 270
+V V+H++ +A R+ ++ A+ + GG +++ +I +P + V ++I
Sbjct: 252 VVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKIFENPESQRVEDYI 300
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc.
Length = 708
Score = 85.6 bits (212), Expect = 2e-17
Identities = 69/258 (26%), Positives = 122/258 (47%), Gaps = 49/258 (18%)
Query: 34 DKVS-EYGMVSAVIK-ANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLV--- 88
+ VS YG S ++ +L +K ++G+SG+GKSTL + + G GE+L+
Sbjct: 477 NDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGF 536
Query: 89 ---DTDKG----FVN-----PYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGL 136
D D+ F+N PY ++L L + V Q +
Sbjct: 537 SLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQD-----------EIWAAC 585
Query: 137 EFLDIPDVERKSRVAEHLEIVNLTKWADCKINM----LSGGMKQRVGFARAFATGAPILL 192
E +I D +I N+ +++ +SGG KQR+ ARA T + +L+
Sbjct: 586 EIAEIKD-----------DIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLI 634
Query: 193 MDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCG 252
+DE S+LD + ++ + LL LQ KTI+FV+H ++ A + ++I +++ G+II+ G
Sbjct: 635 LDESTSNLDTITEKKIVNNLLNLQ---DKTIIFVAHRLSVAKQS-DKIIVLDHGKIIEQG 690
Query: 253 TPQEIILHPANCYVSEFI 270
+ E++ N + + I
Sbjct: 691 SHDELLD--RNGFYASLI 706
>gnl|CDD|162555 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion.
Length = 544
Score = 85.9 bits (213), Expect = 2e-17
Identities = 64/219 (29%), Positives = 104/219 (47%), Gaps = 18/219 (8%)
Query: 48 ANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRK 107
+ ++ GE L ++G SG+GKSTL R I G+ P G V +D A R+
Sbjct: 337 ISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDG--------ADLKQWDRE 388
Query: 108 LRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAE-HLEIVNLTKWADCK 166
+ + Q L P TVA N+ E D + +++A H I+ L D
Sbjct: 389 TFGKHIGYLPQDVELFP-GTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTV 447
Query: 167 IN----MLSGGMKQRVGFARAFATGAP-ILLMDEPFSSLDPLIRMRLQDELLALQRKLKK 221
I LSGG +QR+ ARA G P ++++DEP S+LD L + + AL+ +
Sbjct: 448 IGPGGATLSGGQRQRIALARAL-YGDPKLVVLDEPNSNLDEEGEQALANAIKALKAR-GI 505
Query: 222 TIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILH 260
T+V ++H + ++I +++ GRI + G E++
Sbjct: 506 TVVVITHRPS-LLGCVDKILVLQDGRIARFGERDEVLAK 543
>gnl|CDD|184206 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 85.6 bits (212), Expect = 2e-17
Identities = 65/230 (28%), Positives = 109/230 (47%), Gaps = 31/230 (13%)
Query: 44 AVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADAN 103
A+ +L + +G L+G +GAGKSTLL +NG+ RG V V + VN +
Sbjct: 20 ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGRE--VNA--ENEK 75
Query: 104 VLRKLRMHTVSMVFQQ-----FALLPWRTVA---RNVELGLEFLDIPDVERKSRVAEHLE 155
+R V +VFQ F+ W VA N+ L + E + RV E L+
Sbjct: 76 WVRS----KVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKD-------EVERRVEEALK 124
Query: 156 IVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLAL 215
V + + D LS G K+RV A A ++++DEP + LDP R Q+ L+ +
Sbjct: 125 AVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDP----RGQETLMEI 180
Query: 216 QRKLK---KTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPA 262
+L KT++ +HD++ A +++ +++ GR++ G ++
Sbjct: 181 LDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDK-SLLTDED 229
>gnl|CDD|162558 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion.
Length = 694
Score = 85.2 bits (211), Expect = 2e-17
Identities = 61/215 (28%), Positives = 108/215 (50%), Gaps = 17/215 (7%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
NL++K GE + ++G SG+GKSTL + + L G+VLVD V+ AD LR+
Sbjct: 477 NLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDG----VDLAIADPAWLRR- 531
Query: 109 RMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLE-IVNLTKWADCKI 167
+ +V Q+ L R++ N+ L V +++A + I L + + ++
Sbjct: 532 ---QMGVVLQENVLFS-RSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEV 587
Query: 168 N----MLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTI 223
LSGG +QR+ ARA IL+ DE S+LD + + + R +T+
Sbjct: 588 GEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICR--GRTV 645
Query: 224 VFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEII 258
+ ++H ++ R +RI ++E G+I + G +E++
Sbjct: 646 IIIAHRLS-TVRACDRIIVLEKGQIAESGRHEELL 679
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 85.1 bits (210), Expect = 2e-17
Identities = 68/230 (29%), Positives = 116/230 (50%), Gaps = 16/230 (6%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLA-PVVRGEVLVDTDKGFVNP 97
YG A+ N+++++ +I L+G SG GKST LR N + + + + LV+ + V
Sbjct: 12 YGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVK- 70
Query: 98 YAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELG--LEFLDIPDVERKSRVAEHLE 155
D LRK V MVFQQ + +++ N+ L + E ++ V + L+
Sbjct: 71 -NQDVVALRK----NVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQ 124
Query: 156 IVNLTKWADCKINM----LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDE 211
V L + K+ LSGG +QR+ ARA A +LL+DEP S+LDP+ +++
Sbjct: 125 KVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEEL 184
Query: 212 LLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHP 261
L L L +++ V+H++ + R+ + A G +I+ G +E +P
Sbjct: 185 LKELSHNL--SMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENP 232
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 85.1 bits (211), Expect = 3e-17
Identities = 73/227 (32%), Positives = 105/227 (46%), Gaps = 41/227 (18%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
NL V+ GE + L+G SGAGKSTL + + G +L+D V+ D LR
Sbjct: 360 NLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDG----VDLRQLDPAELR-- 413
Query: 109 RMHTVSMVFQQFALLPWR------TVARNVELGLEFLDIPDVERKSRVAEHLE-IVNLTK 161
+ AL+P +V N+ G +VE +R A E I L +
Sbjct: 414 ---------ARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPE 464
Query: 162 WADCKIN----MLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQR 217
D + LSGG +QR+ ARA APILL+DE S+LD +Q AL+
Sbjct: 465 GYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQ---QALET 521
Query: 218 KLK-KTIVFVSHDINEAFRL-----GNRIAIMEGGRIIQCGTPQEII 258
+K +T + ++H RL +RI +M+ GRI+ GT E+I
Sbjct: 522 LMKGRTTLIIAH------RLATVLKADRIVVMDQGRIVAQGTHAELI 562
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 84.8 bits (210), Expect = 3e-17
Identities = 73/256 (28%), Positives = 119/256 (46%), Gaps = 40/256 (15%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLR---SINGLAPVVRGE-VLVDTDKGF 94
YG AV L++ K +I +G SG GKST+LR +N L P R E + K
Sbjct: 20 YGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNL 79
Query: 95 VNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFL----DIPD-VERKSR 149
P V R+ + MVFQ+ P +++ N+ G D+ + VER R
Sbjct: 80 YAPDVDPVEVRRR-----IGMVFQKPNPFP-KSIYDNIAYGARINGYKGDMDELVERSLR 133
Query: 150 VAEHLEIVNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPL 203
A W + K + LSGG +QR+ ARA A ++LMDEP S+LDP+
Sbjct: 134 QA--------ALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPI 185
Query: 204 IRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIM-----EG----GRIIQCGTP 254
+R+++ + L+ + TI+ V+H++ +A R+ + A EG G +++
Sbjct: 186 STLRIEELMHELKEQY--TIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRT 243
Query: 255 QEIILHPANCYVSEFI 270
++I P +++
Sbjct: 244 EKIFNSPQQQATRDYV 259
>gnl|CDD|163051 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 529
Score = 84.7 bits (210), Expect = 3e-17
Identities = 65/192 (33%), Positives = 90/192 (46%), Gaps = 29/192 (15%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
+L++ GE + ++G SG+GKSTLL + GL ++GEV +D + L+
Sbjct: 355 SLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLD---------GVSVSSLQDE 405
Query: 109 RMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKIN 168
+S VF Q A L TV N+ LG D D E + LE V L W +
Sbjct: 406 LRRRIS-VFAQDAHLFDTTVRDNLRLGRP--DATDEE----LWAALERVGLADWLRSLPD 458
Query: 169 -----------MLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQR 217
LSGG +QR+ ARA APILL+DEP LD L ++LLA
Sbjct: 459 GLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALS 518
Query: 218 KLKKTIVFVSHD 229
KT+V ++H
Sbjct: 519 --GKTVVVITHH 528
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 84.9 bits (210), Expect = 3e-17
Identities = 71/228 (31%), Positives = 117/228 (51%), Gaps = 9/228 (3%)
Query: 42 VSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAAD 101
V AV K + ++ GE L L+G SG+GKST R++ L GE++ + +
Sbjct: 337 VHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS---- 392
Query: 102 ANVLRKLRMHTVSMVFQQ--FALLPWRTVARNVELGLEFLDIPDVER-KSRVAEHLEIVN 158
L+ LR + +FQ +L P +TV ++ L + + +RVA LE V
Sbjct: 393 PGKLQALR-RDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVG 451
Query: 159 LT-KWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQR 217
L + A + SGG +QR+ ARA A +++ DE S+LD IR ++ + LL LQR
Sbjct: 452 LLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQR 511
Query: 218 KLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCY 265
+F+SHD+ R+ +R+A+M G+I++ G + + +P + Y
Sbjct: 512 DFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPY 559
Score = 79.1 bits (195), Expect = 1e-15
Identities = 60/263 (22%), Positives = 127/263 (48%), Gaps = 16/263 (6%)
Query: 38 EYGMVSAVIKANLEVKKGEILVLMGLSGAGKS----TLLRSINGLAPVVRGE--VLVDTD 91
E ++AV + +++GE L ++G SG+GKS L+R + +V+ + +L
Sbjct: 25 EQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRS 84
Query: 92 KGFVNPYAADANVLRKLRMHTVSMVFQQ--FALLPWRTVARNVELGLEFLDIPDVERKSR 149
+ + A +R +R ++M+FQ+ +L P TV + + R+
Sbjct: 85 RQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEA 142
Query: 150 VAEHLEIVNLTKWADCKI------NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPL 203
+ E +++ + + + + LSGGM+QRV A A + +L+ DEP ++LD
Sbjct: 143 MVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVT 202
Query: 204 IRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPAN 263
I+ ++ + LQ+++ ++F++HD+ + +R+ +M G ++ G+ ++I P +
Sbjct: 203 IQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIFHAPQH 262
Query: 264 CYVSEFIQKLNPITALVAADVMR 286
Y + + + A+ D R
Sbjct: 263 PYTRALLAAVPQLGAMKGLDYPR 285
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 84.3 bits (208), Expect = 4e-17
Identities = 69/245 (28%), Positives = 118/245 (48%), Gaps = 26/245 (10%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVR-----GEVLVDTDKG 93
YG A+ ++++ K + L+G SG GKST +R +N + +++ G+V ++ +
Sbjct: 22 YGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGE-- 79
Query: 94 FVNPYAADANV--LRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVA 151
+ Y D +V LRK V MVFQ+ P ++ NV G + V
Sbjct: 80 --DIYEPDVDVVELRK----NVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVE 132
Query: 152 EHLEIVNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIR 205
L L W + + LSGG +QR+ AR A I+L DEP S+LDP+
Sbjct: 133 NALRSAAL--WDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPIST 190
Query: 206 MRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCY 265
R++D ++ L++ TIV V+H++ +A R+ + G +I+ G ++I +P
Sbjct: 191 ARIEDLIMNLKKDY--TIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHNPREKS 248
Query: 266 VSEFI 270
++I
Sbjct: 249 TEDYI 253
>gnl|CDD|162130 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein.
Length = 617
Score = 83.9 bits (208), Expect = 5e-17
Identities = 75/278 (26%), Positives = 116/278 (41%), Gaps = 27/278 (9%)
Query: 14 VFGETSNKIRKRSRYSIKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLR 73
VFG + + S + E + + K GE+L +MG SGAGK+TL+
Sbjct: 10 VFGRVAQDGSWKQLVSRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLM- 68
Query: 74 SINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMHTVSMVFQQFAL-LPWRTVARNV 132
N LA V +N DA M +S QQ L +P TV ++
Sbjct: 69 --NALAFRSPKGVKGSGSV-LLNGMPIDAK-----EMRAISAYVQQDDLFIPTLTVREHL 120
Query: 133 ELGLEFL---DIPDVERKSRVAEHLEIVNLTKWADCKINM------LSGGMKQRVGFARA 183
+ E++ RV E L+ + L K A+ +I + LSGG ++R+ FA
Sbjct: 121 MFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASE 180
Query: 184 FATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIM 243
T P+L DEP S LD + + L L +K K I + +E F L ++I +M
Sbjct: 181 LLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILM 240
Query: 244 EGGRIIQCGTPQEI--------ILHPANCYVSEFIQKL 273
GR+ G+P + P N ++F ++
Sbjct: 241 AEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQV 278
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 84.0 bits (208), Expect = 5e-17
Identities = 64/211 (30%), Positives = 102/211 (48%), Gaps = 17/211 (8%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPY 98
+G +AV +L V K + L+G +GAGKSTLL+ I G+ GE++ D
Sbjct: 10 FGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHP------ 63
Query: 99 AADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVN 158
+ +H + + + L T N+++ L +PD SR+ E L IV+
Sbjct: 64 ------WTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPD----SRIDEVLNIVD 113
Query: 159 LTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRK 218
LT K S GMKQR+G A A +L++DEP + LDP+ L+ EL+ +
Sbjct: 114 LTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELR-ELIRSFPE 172
Query: 219 LKKTIVFVSHDINEAFRLGNRIAIMEGGRII 249
T++ SH ++E +L + I I+ G +
Sbjct: 173 QGITVILSSHILSEVQQLADHIGIISEGVLG 203
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related.
Length = 585
Score = 83.8 bits (207), Expect = 5e-17
Identities = 70/259 (27%), Positives = 122/259 (47%), Gaps = 40/259 (15%)
Query: 5 AVKFRDVDIVFGETSNKIRKRSRYSIKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLS 64
AV+FR + F +S + S E K G+ + ++G +
Sbjct: 334 AVEFRHITFEFANSSQGVFDVS-----------------------FEAKAGQTVAIVGPT 370
Query: 65 GAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMHTVSMVFQQFALLP 124
GAGK+TL+ + + G++L+D ++ LRK +++ VFQ L
Sbjct: 371 GAGKTTLINLLQRVYDPTVGQILIDG----IDINTVTRESLRK----SIATVFQDAGLFN 422
Query: 125 WRTVARNVELGLEFLDIPDV-ERKSRVAEHLEIVNLTKWADCKI----NMLSGGMKQRVG 179
R++ N+ LG E +V E A H I+ + D + N LSGG +QR+
Sbjct: 423 -RSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLA 481
Query: 180 FARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNR 239
ARA APIL++DE S+LD R+++ + AL++ +T ++H ++ R +
Sbjct: 482 IARAILKNAPILVLDEATSALDVETEARVKNAIDALRK--NRTTFIIAHRLS-TVRNADL 538
Query: 240 IAIMEGGRIIQCGTPQEII 258
+ ++ GR+I+ G+ QE+I
Sbjct: 539 VLFLDQGRLIEKGSFQELI 557
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 83.7 bits (207), Expect = 6e-17
Identities = 62/223 (27%), Positives = 110/223 (49%), Gaps = 20/223 (8%)
Query: 44 AVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADAN 103
A+ N E ++G+ ++G +G+GKSTL+++IN L G V VD +
Sbjct: 22 AIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVD---DITITHKTKDK 78
Query: 104 VLRKLRMHTVSMVFQQF--ALLPWRTVARNVELGLEFLDIPDVERKSRVAEHL------- 154
+R +R + MVFQ F + L TV R + G + + E K+ L
Sbjct: 79 YIRPVR-KRIGMVFQ-FPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSR 136
Query: 155 EIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLA 214
++++ + + +SGG +++ A I+++DEP + LDP + ++ L +
Sbjct: 137 DVMSQSPF------QMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKS 190
Query: 215 LQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257
LQ KTI+ VSHD+NE R + + +M+ G I+ +P+E+
Sbjct: 191 LQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKEL 233
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 83.7 bits (207), Expect = 7e-17
Identities = 62/199 (31%), Positives = 98/199 (49%), Gaps = 12/199 (6%)
Query: 51 EVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRM 110
+ +GE++ ++G SG+GKSTLL + GL G+V+ + ++ ++ A +LR
Sbjct: 31 SIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQP--MSKLSSAAKA--ELRN 86
Query: 111 HTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKINML 170
+ ++Q LLP T NV + L E SR E L V L A+ + + L
Sbjct: 87 QKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSEL 146
Query: 171 SGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQD---ELLA-LQRKLKKTIVFV 226
SGG +QRV ARA ++L DEP +LD R D +LL L R + V
Sbjct: 147 SGGERQRVAIARALVNNPRLVLADEPTGNLD----ARNADSIFQLLGELNRLQGTAFLVV 202
Query: 227 SHDINEAFRLGNRIAIMEG 245
+HD+ A R+ ++ + +G
Sbjct: 203 THDLQLAKRMSRQLEMRDG 221
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 83.0 bits (206), Expect = 1e-16
Identities = 68/220 (30%), Positives = 111/220 (50%), Gaps = 27/220 (12%)
Query: 42 VSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD-TDKGFVNPYAA 100
V A+ + + + G++ LMG +GAGKSTLL+ ++G G +L+D + F + AA
Sbjct: 17 VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAA 76
Query: 101 DANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPD----VERK---SRVAEH 153
A V++++Q+ L+P TVA N+ LG +P V R+ E
Sbjct: 77 LA--------AGVAIIYQELHLVPEMTVAENLYLG----QLPHKGGIVNRRLLNYEAREQ 124
Query: 154 LEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELL 213
LE + + D + LS G +Q V A+A A A ++ DEP SSL R ++L
Sbjct: 125 LEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLS----AREIEQLF 180
Query: 214 ALQRKLK---KTIVFVSHDINEAFRLGNRIAIMEGGRIIQ 250
+ R+L+ + I++VSH + E F L + I + + GR +
Sbjct: 181 RVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVA 220
Score = 69.2 bits (170), Expect = 2e-12
Identities = 54/216 (25%), Positives = 96/216 (44%), Gaps = 28/216 (12%)
Query: 48 ANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDK-GFVNPYAA-DANVL 105
+ V+ GEI+ L GL GAG+S L++ + G G+V +D +P A A ++
Sbjct: 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIM 331
Query: 106 -----RKLRMHTVSMVFQQFALLPWRTVARNVELG-----LEFLDIPDVERKSRVAEHLE 155
RK ++P +VA N+ + L + + ++ A+
Sbjct: 332 LCPEDRK-----------AEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADR-F 379
Query: 156 IVNL---TKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDEL 212
I +L T + I LSGG +Q+ R + ++L+DEP +D + + + +
Sbjct: 380 IRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVI 439
Query: 213 LALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRI 248
L + ++FVS D+ E + +RI +M GRI
Sbjct: 440 YELAAQ-GVAVLFVSSDLPEVLGVADRIVVMREGRI 474
>gnl|CDD|172753 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 82.4 bits (203), Expect = 1e-16
Identities = 74/215 (34%), Positives = 113/215 (52%), Gaps = 25/215 (11%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEV----LVDTDKGF 94
YG A++ +L++ +I+ +G SG GKSTLLR N + ++ G L+ D+
Sbjct: 30 YGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDR-- 87
Query: 95 VNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEF------LD--IPDVER 146
N Y + N + KLR V MVFQ+ P +++ N+ LD + D R
Sbjct: 88 -NIYDSQINSV-KLR-RQVGMVFQRPNPFP-KSIYENIAFAPRANGYKGNLDELVEDSLR 143
Query: 147 KSRVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRM 206
++ + E E+ + K K LSGG +QR+ ARA A +LLMDEP S+LDP I
Sbjct: 144 RAAIWE--EVKDKLK---EKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDP-IST 197
Query: 207 RLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIA 241
R Q E L L+ K + TI+ V+H++ +A R+ + A
Sbjct: 198 R-QVEELCLELKEQYTIIMVTHNMQQASRVADWTA 231
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 82.5 bits (204), Expect = 1e-16
Identities = 68/218 (31%), Positives = 113/218 (51%), Gaps = 25/218 (11%)
Query: 42 VSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAAD 101
V A+ NL+V+ I LMG +GAGKSTLL+ + G+ G +L + ++ + +
Sbjct: 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKE--ID-FKSS 67
Query: 102 ANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLE-----FLDIPDVERKSR-VAEHLE 155
L + +SMV Q+ L+ R+V N+ LG F+D + R ++ + + L+
Sbjct: 68 KEALE----NGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELD 123
Query: 156 I-VNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLA 214
I ++ K+ LS Q + A+AF+ A I++MDEP SSL + + L
Sbjct: 124 IDIDPRA----KVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTE----KEVNHLFT 175
Query: 215 LQRKLKKT---IVFVSHDINEAFRLGNRIAIMEGGRII 249
+ RKLK+ IV++SH + E F+L + I I+ G+ I
Sbjct: 176 IIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWI 213
Score = 49.0 bits (117), Expect = 2e-06
Identities = 59/242 (24%), Positives = 100/242 (41%), Gaps = 42/242 (17%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
+ ++ KGEIL + GL GA ++ ++ ++ G+ G + + K N A +A
Sbjct: 268 SFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLH-GKKINNHNANEA------ 320
Query: 109 RMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNL--------- 159
+ FAL+ T R +LDI S + + V L
Sbjct: 321 -------INHGFALV---TEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSD 370
Query: 160 TKWA-----------DCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRL 208
T+W +I LSGG +Q+V R T IL++DEP +D + +
Sbjct: 371 TQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEI 430
Query: 209 QDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGR---IIQCG-TPQEIILHPANC 264
+ L +K K I+ +S ++ E + +RI +M G I+ T Q IL A+
Sbjct: 431 YQLIAELAKK-DKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKTTTQNEILRLASL 489
Query: 265 YV 266
++
Sbjct: 490 HL 491
>gnl|CDD|162243 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c.
Length = 198
Score = 81.6 bits (202), Expect = 3e-16
Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 15/149 (10%)
Query: 55 GEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMHTVS 114
GE L + G +G GK+TLLR + GL GEV + R +
Sbjct: 26 GEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWN---------GTALAEQRDEPHRNIL 76
Query: 115 MVFQQFALLPWRTVARNVELGLEFL-DIPDVERKSRVAEHLEIVNLTKWADCKINMLSGG 173
+ L P + N L F I +++ + + L V LT + D LS G
Sbjct: 77 YLGHLPGLKPELSALEN----LHFWAAIHGGAQRT-IEDALAAVGLTGFEDLPAAQLSAG 131
Query: 174 MKQRVGFARAFATGAPILLMDEPFSSLDP 202
++R+ AR + + AP+ ++DEP ++LD
Sbjct: 132 QQRRLALARLWLSRAPLWILDEPTTALDK 160
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 80.9 bits (200), Expect = 5e-16
Identities = 69/242 (28%), Positives = 117/242 (48%), Gaps = 18/242 (7%)
Query: 44 AVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLA--PVVRGEVLVDT-DKGFVNPYAA 100
AV + + VK+GE++ ++G SG+GKS +I GL P G V+ + + +
Sbjct: 22 AVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYP---GRVMAEKLEFNGQDLQRI 78
Query: 101 DANVLRKLRMHTVSMVFQQ--FALLPWRTVARNVELGLEFLDIPD----VERKSRVAEHL 154
R L V+M+FQ +L P TV + +E + + R+ R + L
Sbjct: 79 SEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQI---MEAIKVHQGGNKKTRRQRAIDLL 135
Query: 155 EIVNLTKWA---DCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDE 211
V + A D + LSGGM QRV A A A +L+ DEP ++LD I+ ++ +
Sbjct: 136 NQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIEL 195
Query: 212 LLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFIQ 271
LL LQ+K +V ++HD+ ++I +M G++++ G +I P + Y ++
Sbjct: 196 LLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAPRHPYTQALLR 255
Query: 272 KL 273
L
Sbjct: 256 AL 257
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 80.7 bits (199), Expect = 5e-16
Identities = 58/211 (27%), Positives = 104/211 (49%), Gaps = 9/211 (4%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
+L V GEI+ L+G +GAGK+T + G+ P G +++D + + P A A
Sbjct: 23 SLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARA------ 76
Query: 109 RMHTVSMVFQQFALLPWRTVARNVELGLEFL-DIPDVERKSRVAEHLEIVNLTKWADCKI 167
+ + Q+ ++ +V N+ L+ D+ +R+ R E +E ++ D
Sbjct: 77 -RRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMG 135
Query: 168 NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVS 227
LSGG ++RV ARA A +L+DEPF+ +DP+ + ++ ++ R ++
Sbjct: 136 QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIK-RIIEHLRDSGLGVLITD 194
Query: 228 HDINEAFRLGNRIAIMEGGRIIQCGTPQEII 258
H++ E + R I+ G +I GTP EI+
Sbjct: 195 HNVRETLAVCERAYIVSQGHLIAHGTPTEIL 225
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 80.6 bits (199), Expect = 5e-16
Identities = 66/212 (31%), Positives = 104/212 (49%), Gaps = 20/212 (9%)
Query: 55 GEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMHTVS 114
G++ L+G +G+GKSTLL+ + P GE+L+D P + ++ K V+
Sbjct: 37 GKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDA-----QPLESWSS---KAFARKVA 88
Query: 115 MVFQQFALLPWRTVARNVELGLE----FLDIPDVERKSRVAEHLEIVNLTKWADCKINML 170
+ QQ TV V +G L + +V E + +V L A ++ L
Sbjct: 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSL 148
Query: 171 SGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKK----TIVFV 226
SGG +QR A A + LL+DEP S+LD + Q ++LAL +L + T++ V
Sbjct: 149 SGGERQRAWIAMLVAQDSRCLLLDEPTSALD----IAHQVDVLALVHRLSQERGLTVIAV 204
Query: 227 SHDINEAFRLGNRIAIMEGGRIIQCGTPQEII 258
HDIN A R + + + GG +I GTP E++
Sbjct: 205 LHDINMAARYCDYLVALRGGEMIAQGTPAELM 236
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 80.4 bits (198), Expect = 6e-16
Identities = 67/250 (26%), Positives = 115/250 (46%), Gaps = 21/250 (8%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPY 98
YG + +E+ G ++G +G GKSTLLR+++ L G V +D + + Y
Sbjct: 17 YGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEH--IQHY 74
Query: 99 AADANVLRKLRMHTVSMVFQQFALLP-----WRTVARNVELGLEFLDIPDVERKSRVAEH 153
A+ V R++ + Q A P VAR E + V +
Sbjct: 75 ASK-EVARRIGL------LAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKA 127
Query: 154 LEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELL 213
++ +T AD ++ LSGG +QR A A I+L+DEP + LD ++ L + L
Sbjct: 128 MQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLS 187
Query: 214 ALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFIQKL 273
L R+ T+ V HD+N+A R + + + G+I+ G P+EI+ +E I+++
Sbjct: 188 ELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV-------TAELIERI 240
Query: 274 NPITALVAAD 283
+ ++ D
Sbjct: 241 YGLRCMIIDD 250
>gnl|CDD|182515 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 80.0 bits (198), Expect = 7e-16
Identities = 66/206 (32%), Positives = 95/206 (46%), Gaps = 23/206 (11%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
NL +K+GE+L L+G +G+GKSTL + GL GE+L+D V A RKL
Sbjct: 343 NLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKP--VT--AEQPEDYRKL 398
Query: 109 RMHTVSMVFQQF----ALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWAD 164
S VF F LL N L ++L+ + K + + I NL
Sbjct: 399 ----FSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDG-RISNLK---- 449
Query: 165 CKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIV 224
LS G K+R+ A A ILL+DE + DP R LL L +++ KTI
Sbjct: 450 -----LSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIF 504
Query: 225 FVSHDINEAFRLGNRIAIMEGGRIIQ 250
+SHD + F +R+ M G++ +
Sbjct: 505 AISHD-DHYFIHADRLLEMRNGQLSE 529
>gnl|CDD|172763 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 79.9 bits (197), Expect = 1e-15
Identities = 70/246 (28%), Positives = 118/246 (47%), Gaps = 27/246 (10%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVV-----RGEVLVDTDKG 93
YG AV K N ++ + ++G SG GKST LR+IN + ++ G ++ D +
Sbjct: 49 YGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGED- 107
Query: 94 FVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPD-------VER 146
+ D +LRK + MVFQ+ P +++ N+ G I D VE+
Sbjct: 108 -IYGKFTDEVLLRK----KIGMVFQKPNPFP-KSIFDNIAYGPRLHGINDKKQLEEIVEK 161
Query: 147 KSRVAEHLEIVN--LTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLI 204
R A + V+ L K A LSGG +QR+ AR A ILL+DEP S+LDP
Sbjct: 162 SLRKAALWDEVSDRLDKNA----LGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKA 217
Query: 205 RMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANC 264
+++D + L+ TI+ V+H++ +A R+ + G +++ ++ +P +
Sbjct: 218 TAKIEDLIQELRGSY--TIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTNPKDR 275
Query: 265 YVSEFI 270
++I
Sbjct: 276 MTEDYI 281
>gnl|CDD|185088 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 78.6 bits (194), Expect = 2e-15
Identities = 66/237 (27%), Positives = 117/237 (49%), Gaps = 35/237 (14%)
Query: 50 LEVKKGEILVLMGLSGAGKSTLLRSINGL---APVV--------RGEVLVDTDKGFVNPY 98
L+++ GE L L+G SG+GKS SI L PVV GE L+
Sbjct: 30 LQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLH--------- 80
Query: 99 AADANVLRKLRMHTVSMVFQQ--FALLPWRTVARNVELGLEFLDIPDVERK----SRVAE 152
A LR +R + ++M+FQ+ +L P T+ + + E L + R+ +
Sbjct: 81 -ASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQL---YEVLSLHRGMRREAARGEILN 136
Query: 153 HLEIVNLTKWADCKIN----MLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRL 208
L+ V + + A ++ LSGG +QRV A A T +L+ DEP ++LD ++ ++
Sbjct: 137 CLDRVGIRQAAK-RLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQI 195
Query: 209 QDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCY 265
L LQ++L ++F++H+++ +L +R+A+M+ GR ++ + P + Y
Sbjct: 196 LQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLFSAPTHPY 252
Score = 76.7 bits (189), Expect = 9e-15
Identities = 63/232 (27%), Positives = 112/232 (48%), Gaps = 27/232 (11%)
Query: 53 KKGEILVLMGLSGAGKST----LLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
+ GE L L+G SG+GKST LLR IN +GE+ D + L +
Sbjct: 310 RPGETLGLVGESGSGKSTTGLALLRLINS-----QGEIWFD---------GQPLHNLNRR 355
Query: 109 RM----HTVSMVFQ--QFALLPWRTVARNVELGLEF--LDIPDVERKSRVAEHLEIVNLT 160
++ H + +VFQ +L P V + +E GL + +R+ +V +E V L
Sbjct: 356 QLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLD 415
Query: 161 KWADCKI-NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKL 219
+ SGG +QR+ ARA ++++DEP SSLD ++ ++ L +LQ+K
Sbjct: 416 PETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKH 475
Query: 220 KKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFIQ 271
+ +F+SHD++ L +++ ++ G +++ G + + P Y + +
Sbjct: 476 QLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAAPQQEYTRQLLA 527
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 78.3 bits (193), Expect = 3e-15
Identities = 72/245 (29%), Positives = 107/245 (43%), Gaps = 41/245 (16%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAP--------VVRGEVLVDTDKGFVNPYAA 100
+L ++ G + L+G +GAGKSTLL+++ G V G+V ++ + P AA
Sbjct: 21 SLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGE-----PLAA 75
Query: 101 -DANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEH------ 153
DA L +LR V Q A + AR + L + P R +
Sbjct: 76 IDAPRLARLRA-----VLPQAAQPAFAFSAREIVLLGRY---PHARRAGALTHRDGEIAW 127
Query: 154 --LEIVNLTKWADCKINMLSGGMKQRVGFARAFA---------TGAPILLMDEPFSSLDP 202
L + T + LSGG RV FAR A LL+DEP ++LD
Sbjct: 128 QALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDL 187
Query: 203 LIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIIL--H 260
+ RL D + L R ++ + HD N A R +RIA++ G I+ G P +++ H
Sbjct: 188 AHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVLTPAH 247
Query: 261 PANCY 265
A CY
Sbjct: 248 IARCY 252
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 78.4 bits (194), Expect = 3e-15
Identities = 60/222 (27%), Positives = 106/222 (47%), Gaps = 19/222 (8%)
Query: 36 VSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPV--VRGEVLVDTDKG 93
+G V A+ +L+V+ GEI+ L G +GAGKSTL++ ++G+ P GE++ + ++
Sbjct: 12 TKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEE- 70
Query: 94 FVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLD---IPDVERKSRV 150
A+ +R ++++ Q+ AL+ +V N+ LG E + R
Sbjct: 71 ------LQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRA 124
Query: 151 AEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQD 210
+ L + L + L G +Q V A+A A +L++DEP +SL
Sbjct: 125 QKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTE----SETA 180
Query: 211 ELLALQRKLKK---TIVFVSHDINEAFRLGNRIAIMEGGRII 249
LL + R LK +++SH +NE + + I ++ GR I
Sbjct: 181 VLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHI 222
Score = 42.6 bits (101), Expect = 1e-04
Identities = 52/233 (22%), Positives = 99/233 (42%), Gaps = 30/233 (12%)
Query: 48 ANLEVKKGEILVLMGLSGAGKSTLLRSINGLAP-VVRGEVLVDTDKGFVNPYAADANVLR 106
+ +++GEIL + GL GAG++ L++ + G P GE+ +D +
Sbjct: 281 VSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKP-------VKIRNPQ 333
Query: 107 KLRMHTVSMVFQ---QFALLPWRTVARNVELG----LEFLDIPDVERKSRVAEHLEIVNL 159
+ ++MV + + ++P V +N+ L D + + I L
Sbjct: 334 QAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILE-SIQRL 392
Query: 160 ---TKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQ 216
T + I LSGG +Q+ A+ IL++DEP +D + + E+ L
Sbjct: 393 KVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGID----VGAKYEIYKLI 448
Query: 217 RKLKK---TIVFVSHDINEAFRLGNRIAIMEGGRI----IQCGTPQEIILHPA 262
+L + I+ +S ++ E L +R+ +M G++ I QE ++ A
Sbjct: 449 NQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNLTQEQVMEAA 501
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 78.3 bits (193), Expect = 3e-15
Identities = 58/224 (25%), Positives = 115/224 (51%), Gaps = 12/224 (5%)
Query: 42 VSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAAD 101
V AV + +++G+ L ++G +G+GKSTL + + G+ GE+L+D Y+
Sbjct: 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS-- 83
Query: 102 ANVLRKLRMHTVSMVFQ--QFALLPWRTVARNVELGLEF-LDIPDVERKSRVAEHLEIVN 158
R + M+FQ +L P + +++ ++ L D+ +R+ ++ E L V
Sbjct: 84 ------YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVG 137
Query: 159 L-TKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQR 217
L A +ML+ G KQR+G ARA +++ DE +SLD +R +L + +L LQ
Sbjct: 138 LLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQE 197
Query: 218 KLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHP 261
K + ++V+ + + +++ +M G +++ G+ +++ P
Sbjct: 198 KQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLASP 241
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 78.1 bits (193), Expect = 3e-15
Identities = 64/225 (28%), Positives = 108/225 (48%), Gaps = 25/225 (11%)
Query: 43 SAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVV---RGEVLVD-TDKGFVNPY 98
V + E K G+ + ++G +GAGKSTL IN L V G +L+D TD V
Sbjct: 349 QGVEDVSFEAKPGQTVAIVGPTGAGKSTL---INLLQRVFDPQSGRILIDGTDIRTVT-- 403
Query: 99 AADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLE-IV 157
LR +++VFQ A L R++ N+ +G ++ + A+ + I
Sbjct: 404 ------RASLR-RNIAVVFQD-AGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIE 455
Query: 158 NLTKWADCKI----NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELL 213
D + LSGG +QR+ ARA PIL++DE S+LD +++ L
Sbjct: 456 RKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALD 515
Query: 214 ALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEII 258
L K + T + ++H ++ R +RI + + GR+++ G+ E++
Sbjct: 516 EL-MKGRTTFI-IAHRLS-TVRNADRILVFDNGRVVESGSFDELV 557
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 77.8 bits (192), Expect = 4e-15
Identities = 68/236 (28%), Positives = 110/236 (46%), Gaps = 28/236 (11%)
Query: 44 AVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVL---VDTDKGFVNPYAA 100
AV L + +GE L ++G SG GKST R+I GL GEV D
Sbjct: 36 AVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGM------- 88
Query: 101 DANVLRKLRMHTVSMVFQQ--FALLPWRTVARNVELGLE--FLDIPDVERKSRVAEHLEI 156
+ R +R + M+FQ +L P T+ + L + E K RV +
Sbjct: 89 KDDEWRAVR-SDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLK 147
Query: 157 VNLTKWADCKINML-------SGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQ 209
V L N++ SGG QR+G ARA +++ DEP S+LD I+ ++
Sbjct: 148 VGLLP------NLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVV 201
Query: 210 DELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCY 265
+ L LQR++ +++F++HD+ + +R+ +M G ++ GT E+ +P + Y
Sbjct: 202 NLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHPY 257
>gnl|CDD|183003 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 76.8 bits (190), Expect = 7e-15
Identities = 71/245 (28%), Positives = 116/245 (47%), Gaps = 50/245 (20%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
+L++K GE + L+G +G GKSTLL+ + +GE+L++ + Y+ A L
Sbjct: 360 SLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQP--IADYSEAA-----L 412
Query: 109 RMHTVSMVFQQFALLPWR------TVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKW 162
R Q +++ R T+ N+ L + D + E L+ V L K
Sbjct: 413 R--------QAISVVSQRVHLFSATLRDNLLLAAP--NASD----EALIEVLQQVGLEKL 458
Query: 163 ADCK--INM--------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDEL 212
+ +N LSGG ++R+G ARA AP+LL+DEP LD + ++
Sbjct: 459 LEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDA----ETERQI 514
Query: 213 LALQRKL--KKTIVFVSHDIN--EAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSE 268
L L + KT++ ++H + E F +RI +M+ G+II+ GT QE +L Y
Sbjct: 515 LELLAEHAQNKTVLMITHRLTGLEQF---DRICVMDNGQIIEQGTHQE-LLAQQGRYYQ- 569
Query: 269 FIQKL 273
Q+L
Sbjct: 570 LKQRL 574
>gnl|CDD|163508 TIGR03796, NHPM_micro_ABC1, NHPM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes an multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHPM, Nitrile Hydratase
Propeptide Microcin.
Length = 710
Score = 76.1 bits (188), Expect = 1e-14
Identities = 66/214 (30%), Positives = 104/214 (48%), Gaps = 21/214 (9%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
+L ++ G+ + L+G SG+GKST+ + + GL GE+L D P AN
Sbjct: 499 SLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLAN----- 553
Query: 109 RMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAE-HLEIVNLTKWADCKI 167
+V+MV Q L TV N+ L + D+ R + A H I + D ++
Sbjct: 554 ---SVAMVDQDIFLFE-GTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAEL 609
Query: 168 -----NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKT 222
N LSGG +QR+ ARA IL++DE S+LDP + D L R+ T
Sbjct: 610 AEGGAN-LSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNL----RRRGCT 664
Query: 223 IVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQE 256
+ V+H ++ R + I ++E G+++Q GT +E
Sbjct: 665 CIIVAHRLS-TIRDCDEIIVLERGKVVQRGTHEE 697
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 75.4 bits (185), Expect = 2e-14
Identities = 63/213 (29%), Positives = 102/213 (47%), Gaps = 14/213 (6%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
NL+ + L+G +G GKSTL +++GL +G VL P L L
Sbjct: 21 NLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGK-----PLDYSKRGLLAL 75
Query: 109 RMHTVSMVFQQFALLPWRT-VARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKI 167
R V+ VFQ + T + ++ L L +P+ E RV E L +V+ + I
Sbjct: 76 RQQ-VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPI 134
Query: 168 NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKL---KKTIV 224
LS G K+RV A A A LL+DEP + LDP R +++A+ R++ ++
Sbjct: 135 QCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRT----QMIAIIRRIVAQGNHVI 190
Query: 225 FVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257
SHDI+ + + + + ++ G+I+ G P E+
Sbjct: 191 ISSHDIDLIYEISDAVYVLRQGQILTHGAPGEV 223
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 75.1 bits (184), Expect = 2e-14
Identities = 64/227 (28%), Positives = 113/227 (49%), Gaps = 24/227 (10%)
Query: 60 LMGLSGAGKSTLLRSINGLAPVVRG-----EVLVDTDKGFVNPYAADANVLRKLRMHTVS 114
LMG +G+GK+T LR++N + V G +VL+ F +VL R V
Sbjct: 52 LMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIF-----NYRDVLEFRR--RVG 104
Query: 115 MVFQQFALLPWRTVARNVELGLEFLD-IPDVERKSRVAEHLEIVNLTKWADCKINM---- 169
M+FQ+ P ++ NV G+ +P E + L V L W K +
Sbjct: 105 MLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGL--WDAVKDRLSDSP 161
Query: 170 --LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVS 227
LSGG +Q + AR A +LL+DEP S+LDP ++++ + +L +L T++ V+
Sbjct: 162 FRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRL--TVIIVT 219
Query: 228 HDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFIQKLN 274
H++ +A R+ +R A+ GR+++ G +++ P + + ++ L+
Sbjct: 220 HNLAQAARISDRAALFFDGRLVEEGPTEQLFSSPKHAETARYVAGLS 266
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 74.9 bits (184), Expect = 3e-14
Identities = 64/218 (29%), Positives = 110/218 (50%), Gaps = 12/218 (5%)
Query: 34 DKVS-EYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDK 92
DKVS YG + A+ + +L + +GEI+ L+G +GAGK+TLL ++ G G ++ D K
Sbjct: 9 DKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFD-GK 67
Query: 93 GFVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDV-ERKSRVA 151
+ A ++R+ V++V + + TV N+ +G F + ER V
Sbjct: 68 DITD--WQTAKIMRE----AVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVY 121
Query: 152 EHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDE 211
E L + + +SGG +Q + RA + +LL+DEP L P+I ++ D
Sbjct: 122 ELFP--RLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDT 179
Query: 212 LLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRII 249
+ L R+ TI V + N+A +L +R ++E G ++
Sbjct: 180 IEQL-REQGMTIFLVEQNANQALKLADRGYVLENGHVV 216
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 74.1 bits (182), Expect = 4e-14
Identities = 65/208 (31%), Positives = 94/208 (45%), Gaps = 22/208 (10%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRK- 107
++ GE+ L G SGAGKSTLL+ I G+ G++ D L+
Sbjct: 22 TFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFS---------GHDITRLKNR 72
Query: 108 ----LRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWA 163
LR + M+FQ LL RTV NV + L + + RV+ L+ V L A
Sbjct: 73 EVPFLRRQ-IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKA 131
Query: 164 DCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIR---MRLQDELLALQRKLK 220
LSGG +QRVG ARA +LL DEP +LD + +RL +E ++
Sbjct: 132 KNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEF----NRVG 187
Query: 221 KTIVFVSHDINEAFRLGNRIAIMEGGRI 248
T++ +HDI R R+ + G +
Sbjct: 188 VTVLMATHDIGLISRRSYRMLTLSDGHL 215
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 74.1 bits (182), Expect = 5e-14
Identities = 69/257 (26%), Positives = 118/257 (45%), Gaps = 35/257 (13%)
Query: 40 GMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYA 99
G V AV + ++ + +GEI L+G SG+GKS + ++I G V + V D+ +
Sbjct: 18 GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICG---VTKDNWRVTADRMRFD--- 71
Query: 100 ADANVL-------RKLRMHTVSMVFQ--QFALLPWRTVARNVELGLEFLDIPDVE----- 145
D ++L RKL H VSM+FQ Q L P V R + +IP
Sbjct: 72 -DIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQL-----MQNIPGWTYKGRW 125
Query: 146 ------RKSRVAEHLEIVNLTKWADCKINM---LSGGMKQRVGFARAFATGAPILLMDEP 196
RK R E L V + D + L+ G Q+V A A A +L+ DEP
Sbjct: 126 WQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEP 185
Query: 197 FSSLDPLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQE 256
++++P + ++ L L + TI+ +SHD+ + ++I ++ G+ ++ +E
Sbjct: 186 TNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKE 245
Query: 257 IILHPANCYVSEFIQKL 273
++ P + Y I+ +
Sbjct: 246 LVTTPHHPYTQALIRAI 262
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 74.0 bits (182), Expect = 6e-14
Identities = 64/239 (26%), Positives = 115/239 (48%), Gaps = 21/239 (8%)
Query: 40 GMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAP---VVRGEVLVDTDKGFVN 96
G V+AV N ++ GE L ++G SG+GKS ++ GL + G + +
Sbjct: 27 GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNL 86
Query: 97 PYAADANVLRKLRMHTVSMVFQQ--FALLPWRTVARNVELGLEFLDIPDVERKSRVAEH- 153
P L KLR +SM+FQ +L P+ V + +E L + K+ E
Sbjct: 87 PEKE----LNKLRAEQISMIFQDPMTSLNPYMRVGEQL---MEVLMLHKGMSKAEAFEES 139
Query: 154 ---LEIVNLTKWADCKINM----LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRM 206
L+ V + + A ++ M SGGM+QRV A A +L+ DEP ++LD ++
Sbjct: 140 VRMLDAVKMPE-ARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQA 198
Query: 207 RLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCY 265
++ L L+R+ I+ ++HD+ + +++ +M GR ++ G +++ P++ Y
Sbjct: 199 QIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFYQPSHPY 257
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 73.5 bits (181), Expect = 7e-14
Identities = 65/226 (28%), Positives = 110/226 (48%), Gaps = 24/226 (10%)
Query: 44 AVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADAN 103
A+ N ++ G+ + L+G SG+GKST+ + + GE+L+D + Y
Sbjct: 358 ALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHD--LRDYT---- 411
Query: 104 VLRKLRMHTVSMVFQQFALLPWRTVARNVELGL-EFLDIPDVERKSRVAEHLEIVN-LTK 161
L LR V++V Q L T+A N+ E +E +R+A ++ +N +
Sbjct: 412 -LASLRNQ-VALVSQNVHLFN-DTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDN 468
Query: 162 WADCKIN----MLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQR 217
D I +LSGG +QR+ ARA +PIL++DE S+LD +Q L LQ+
Sbjct: 469 GLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK 528
Query: 218 KLKKTIVFVSH---DINEAFRLGNRIAIMEGGRIIQCGTPQEIILH 260
+T + ++H I +A + I ++E G I++ GT E++
Sbjct: 529 --NRTSLVIAHRLSTIEKA----DEILVVEDGEIVERGTHAELLAQ 568
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 72.7 bits (179), Expect = 1e-13
Identities = 66/239 (27%), Positives = 109/239 (45%), Gaps = 32/239 (13%)
Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD--------- 89
+G + AV NLEV++ EI+ L+G +GAGK+T+ + G G +L+
Sbjct: 15 FGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPG 74
Query: 90 ---TDKGFVNPYAADANVLRKLRMHTVS---MVFQQFALLPWRTVARNVELGLEFLDIPD 143
G V + +V R R TV +V Q + + + GL L P
Sbjct: 75 HQIARMGVVRTFQ---HV-RLFREMTVIENLLVAQH------QQLKTGLFSGL--LKTPA 122
Query: 144 VERK-----SRVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFS 198
R R A LE V L + A+ + L+ G ++R+ AR T IL++DEP +
Sbjct: 123 FRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAA 182
Query: 199 SLDPLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257
L+P L + + L+ + T++ + HD+ + +RI ++ G + GTP+EI
Sbjct: 183 GLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEI 241
>gnl|CDD|179632 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 72.3 bits (178), Expect = 2e-13
Identities = 69/225 (30%), Positives = 98/225 (43%), Gaps = 36/225 (16%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
+ EV+ GEIL L+G +GAGKSTLL + GL P G + A A L +
Sbjct: 16 SAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQ----PLEAWSAAELARH 70
Query: 109 RMH-------TVSM-VFQQFAL-LPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNL 159
R + +M VFQ L P +T V L VAE L L
Sbjct: 71 RAYLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALN-----------EVAEAL---GL 116
Query: 160 TKWADCKINMLSGGMKQRVGFARAFATGAP-------ILLMDEPFSSLDPLIRMRLQDEL 212
+N LSGG QRV A P +LL+DEP +SLD + + D L
Sbjct: 117 DDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLD-VAQQAALDRL 175
Query: 213 LALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257
L+ + +V SHD+N R +R+ +++ G+++ G E+
Sbjct: 176 LSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEV 220
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 71.8 bits (176), Expect = 3e-13
Identities = 50/197 (25%), Positives = 96/197 (48%), Gaps = 24/197 (12%)
Query: 43 SAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADA 102
+A+ A+ V G I L+G++G+GKSTL +++ G + G++ +
Sbjct: 21 TALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISI-----------LGQ 69
Query: 103 NVLRKLRMHTVSMVFQQ------FALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEI 156
+ L+ + V+ V Q F +L V + +L + V L
Sbjct: 70 PTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALAR 129
Query: 157 VNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQ 216
V++ ++ +I LSGG K+RV ARA A ++L+DEPF+ +D ++ + +++L
Sbjct: 130 VDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVD----VKTEARIISLL 185
Query: 217 RKLK---KTIVFVSHDI 230
R+L+ KT++ +H++
Sbjct: 186 RELRDEGKTMLVSTHNL 202
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 71.7 bits (176), Expect = 3e-13
Identities = 72/281 (25%), Positives = 123/281 (43%), Gaps = 43/281 (15%)
Query: 44 AVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVL------VDTDKGFVNP 97
A+ ++E+ +GE + ++G +G+GK+T + +N L G + + K
Sbjct: 22 ALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81
Query: 98 YAADANVLRKLRMHT----------VSMVFQQFA--LLPWRTVARNVELGLEFLDIPDVE 145
+ V++K R V +VF QFA L +T+ +++ G + + E
Sbjct: 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVF-QFAEYQLFEQTIEKDIIFGPVSMGVSKEE 140
Query: 146 RKSRVAEHLEIVNL-TKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLI 204
K R A+++E+V L + LSGG K+RV A A L+ DEP + LDP
Sbjct: 141 AKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDP-- 198
Query: 205 RMRLQDELLALQRKLK---KTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEII--- 258
+ E+L + L KTI+ V+HD++ R + G+II+ G +I+
Sbjct: 199 --QGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDILSDN 256
Query: 259 -------LHPANCYVSEFIQKLNPITALVAADVMRVCSIDD 292
+ P F+ KL DV +V SI++
Sbjct: 257 KFLIENNMEPPKLLN--FVNKLEKK----GIDVPKVTSIEE 291
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 70.9 bits (174), Expect = 4e-13
Identities = 63/223 (28%), Positives = 105/223 (47%), Gaps = 27/223 (12%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
N +K G++L + G +G+GKSTLL I V G++ L KL
Sbjct: 335 NFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIP------------LTKL 382
Query: 109 RMHTVS---MVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAE-HLEIVNLTKWAD 164
++ + V Q L TVA N+ LG ++E +R+A H +I+ L + D
Sbjct: 383 QLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYD 442
Query: 165 CKIN----MLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKL- 219
++ MLSGG KQR+ ARA A IL++D+ S++D R + ++L R+
Sbjct: 443 TEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDG----RTEHQILHNLRQWG 498
Query: 220 -KKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHP 261
+T++ +H ++ A + I +M+ G I Q G ++
Sbjct: 499 EGRTVIISAHRLS-ALTEASEILVMQHGHIAQRGNHDQLAQQS 540
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 70.9 bits (174), Expect = 4e-13
Identities = 58/209 (27%), Positives = 92/209 (44%), Gaps = 13/209 (6%)
Query: 45 VIKA-NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADAN 103
V+K + + GE+ L+G +GAGKSTL++ I G+ P G + + A A+
Sbjct: 26 VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIG-GNPCARLTPAKAH 84
Query: 104 VLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWA 163
L + +V Q+ L P +V N+ GL ++ + L +
Sbjct: 85 QL------GIYLVPQEPLLFPNLSVKENILFGLP----KRQASMQKMKQLLAALGCQLDL 134
Query: 164 DCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTI 223
D L +Q V R + IL++DEP +SL P RL + L + I
Sbjct: 135 DSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQ-GVGI 193
Query: 224 VFVSHDINEAFRLGNRIAIMEGGRIIQCG 252
VF+SH + E +L +RI++M G I G
Sbjct: 194 VFISHKLPEIRQLADRISVMRDGTIALSG 222
Score = 52.0 bits (125), Expect = 2e-07
Identities = 54/217 (24%), Positives = 95/217 (43%), Gaps = 35/217 (16%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLR-K 107
+LEV+ GEIL L G+ GAG++ L ++ GL P G ++++ + N L
Sbjct: 283 SLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLN---------GKEINALSTA 333
Query: 108 LRMHTVSMVF-----QQFAL-----LPWRTVARNV-ELGLEFLDIPDVERKSRVAE--HL 154
R+ +V+ Q L L W A G ++ R++ V E
Sbjct: 334 QRLAR-GLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGF-WIK---PARENAVLERYRR 388
Query: 155 EIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLA 214
+ A+ LSGG +Q+V A+ +L++DEP +D R +++
Sbjct: 389 ALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSAR----NDIYQ 444
Query: 215 LQRKLKK---TIVFVSHDINEAFRLGNRIAIMEGGRI 248
L R + ++F+S D+ E ++ +R+ +M G I
Sbjct: 445 LIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEI 481
>gnl|CDD|183014 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 68.7 bits (169), Expect = 2e-12
Identities = 61/219 (27%), Positives = 101/219 (46%), Gaps = 28/219 (12%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANV-LRK 107
N + G+ + L+G SGAGK++LL ++ G P +G + ++ + LR+
Sbjct: 370 NFTLPAGQRIALVGPSGAGKTSLLNALLGFLPY-QGSLKIN-------------GIELRE 415
Query: 108 LRM----HTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVN-LTKW 162
L +S V Q LP T+ NV LG +++ A E + L +
Sbjct: 416 LDPESWRKHLSWVGQN-PQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQG 474
Query: 163 ADCKIN----MLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRK 218
D I LS G QR+ ARA +LL+DEP +SLD + L A R
Sbjct: 475 LDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASR- 533
Query: 219 LKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257
++T + V+H + + + ++I +M+ G+I+Q G E+
Sbjct: 534 -RQTTLMVTHQLEDLAQW-DQIWVMQDGQIVQQGDYAEL 570
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 67.2 bits (164), Expect = 5e-12
Identities = 46/155 (29%), Positives = 72/155 (46%), Gaps = 16/155 (10%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
+ V GE L++ G +GAGK+TLLR + GL V G++ +D R
Sbjct: 31 DFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGK-----------TATRGD 79
Query: 109 RMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRV-AEHLEIVNLTKWADCKI 167
R ++ + L + N L FL R ++ L IV L + D +
Sbjct: 80 RSRFMAYLGHLPGLKADLSTLEN----LHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLV 135
Query: 168 NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDP 202
LS G K+R+ AR + + AP+ L+DEP+++LD
Sbjct: 136 RQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDL 170
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005).
Length = 500
Score = 67.2 bits (164), Expect = 6e-12
Identities = 64/229 (27%), Positives = 111/229 (48%), Gaps = 31/229 (13%)
Query: 36 VSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAP--VVRGEVLVDTDKG 93
V +G V A+ +LEV+ GE + L G +GAGKSTL++ ++G+ P GE+
Sbjct: 8 VKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSP- 66
Query: 94 FVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEF------LDIPDVERK 147
A+ +R + ++ Q+ L+P +VA N+ LG E + + +
Sbjct: 67 ------LKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLR 120
Query: 148 SR--VAE-HLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLI 204
++ + E L+ N+T+ + GG +Q V A+A A +L++DEP SSL
Sbjct: 121 AKNLLRELQLDADNVTR----PVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSL---- 172
Query: 205 RMRLQDE-LLALQRKLKK---TIVFVSHDINEAFRLGNRIAIMEGGRII 249
+ E LL + R LK V++SH +NE + + I ++ G+ +
Sbjct: 173 -TEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHV 220
Score = 46.4 bits (110), Expect = 1e-05
Identities = 50/226 (22%), Positives = 99/226 (43%), Gaps = 24/226 (10%)
Query: 52 VKKGEILVLMGLSGAGKSTLLRSINGLAP-VVRGEVLVDTDKGFVNPYAADANVLRKLRM 110
+++GEIL + GL GAG++ L++++ G P G V ++ N + +R
Sbjct: 283 LRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKP------VDIRNPAQAIR- 335
Query: 111 HTVSMV---FQQFALLPWRTVARNVEL-------GLEFLDIPDVERKSRVAEHLEIVNLT 160
++MV ++ ++P V +N+ L +D E + + + T
Sbjct: 336 AGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRID-AAAELQIIGSAIQRLKVKT 394
Query: 161 KWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLK 220
I LSGG +Q+ A+ T +L++DEP +D + + + L ++
Sbjct: 395 ASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE-G 453
Query: 221 KTIVFVSHDINEAFRLGNRIAIMEGGRI----IQCGTPQEIILHPA 262
I+ VS ++ E L +R+ ++ G++ + QE +L A
Sbjct: 454 VAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHALTQEQVLAAA 499
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 67.1 bits (164), Expect = 6e-12
Identities = 68/221 (30%), Positives = 100/221 (45%), Gaps = 31/221 (14%)
Query: 50 LEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLR 109
LE+K G+IL L+G +GAGKSTL+R + GL G + + KLR
Sbjct: 25 LELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRN----------------GKLR 68
Query: 110 MHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKINM 169
+ V LP TV R FL + +K + L+ V D +
Sbjct: 69 IGYVPQKLYLDTTLPL-TVNR-------FLRLRPGTKKEDILPALKRVQAGHLIDAPMQK 120
Query: 170 LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSHD 229
LSGG QRV ARA +L++DEP +D ++ L D + L+R+L ++ VSHD
Sbjct: 121 LSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHD 180
Query: 230 INEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFI 270
++ + + + I GTP+ + LHP EFI
Sbjct: 181 LHLVMAKTDEVLCLN-HHICCSGTPEVVSLHP------EFI 214
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake.
Length = 555
Score = 66.1 bits (161), Expect = 1e-11
Identities = 56/205 (27%), Positives = 98/205 (47%), Gaps = 19/205 (9%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
+L + +G+I+ ++G +G GKSTL + GL GE+L+D +AD+ R
Sbjct: 362 DLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGA-----AVSADS---RDD 413
Query: 109 RMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKIN 168
S +F F L + +G + + ++ + + LEI + K D +
Sbjct: 414 YRDLFSAIFADFHLF-------DDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFS 466
Query: 169 M---LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVF 225
LS G ++R+ A+ PILL DE + DP + +ELL ++ KTI+
Sbjct: 467 TTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIII 526
Query: 226 VSHDINEAFRLGNRIAIMEGGRIIQ 250
+SHD ++ F L ++I + G I++
Sbjct: 527 ISHD-DQYFELADQIIKLAAGCIVK 550
>gnl|CDD|162132 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
Length = 711
Score = 64.4 bits (157), Expect = 5e-11
Identities = 52/218 (23%), Positives = 99/218 (45%), Gaps = 27/218 (12%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
+ GE++ L+G SG+GKST+ + L G+VL+D L +
Sbjct: 501 TFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVP------------LVQY 548
Query: 109 R---MHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVA-EHLEIVNLTKWAD 164
+H + Q +L +V N+ GL ++ ++ A H I+ D
Sbjct: 549 DHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYD 608
Query: 165 CKI----NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLK 220
++ + LSGG KQR+ ARA +L++DE S+LD LQ+ R
Sbjct: 609 TEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQES-----RSRA 663
Query: 221 -KTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257
+T++ ++H ++ ++I +++ G +++ GT +++
Sbjct: 664 SRTVLLIAHRLSTV-ERADQILVLKKGSVVEMGTHKQL 700
>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
subunit; Provisional.
Length = 264
Score = 63.3 bits (154), Expect = 8e-11
Identities = 55/231 (23%), Positives = 102/231 (44%), Gaps = 26/231 (11%)
Query: 30 IKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD 89
I KH + + + +KA +G+++ L+G++G+GKSTL I G G+V
Sbjct: 29 IPKHKNKTFFALDDISLKAY----EGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKV--- 81
Query: 90 TDKGFVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSR 149
G V+ A A + +L T N+E + + E K+
Sbjct: 82 DRNGEVSVIAISAGLSGQL------------------TGIENIEFKMLCMGFKRKEIKAM 123
Query: 150 VAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQ 209
+ +E L ++ + S GM+ ++GF+ IL++DE S D +
Sbjct: 124 TPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCL 183
Query: 210 DELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILH 260
D++ + + KTI FVSH++ + + +IA +EGG++ G +++
Sbjct: 184 DKIYEFKEQ-NKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPK 233
>gnl|CDD|163251 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity.
Length = 242
Score = 63.0 bits (154), Expect = 1e-10
Identities = 56/227 (24%), Positives = 95/227 (41%), Gaps = 27/227 (11%)
Query: 44 AVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADAN 103
A+ +L V GE+ V++G +GAGK+T++ I G G VL
Sbjct: 17 ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTD----------- 65
Query: 104 VLRKLRMHTVSMV-----FQQFALLPWRTVARNVELGLE--------FLDIPDVERKSRV 150
L L H ++ FQ+ + TV N+EL L E K R+
Sbjct: 66 -LTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRI 124
Query: 151 AEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQD 210
E LE + L AD +LS G KQ + +LL+DEP + + + +
Sbjct: 125 EEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAE 184
Query: 211 ELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257
L +L K ++V V HD+ + +++ ++ G ++ G+ ++
Sbjct: 185 LLKSLAG--KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQV 229
>gnl|CDD|182996 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 62.3 bits (152), Expect = 2e-10
Identities = 53/201 (26%), Positives = 89/201 (44%), Gaps = 27/201 (13%)
Query: 47 KANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTD--------------K 92
A L ++ E + L+G +GAGKSTL++ +NG + G ++ + D +
Sbjct: 21 NAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVE 80
Query: 93 GFVNPYAAD--ANVLRKL-RMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVER-KS 148
G V + A+ L R H +S P + E LD ++ + ++
Sbjct: 81 GTVYDFVAEGIEEQAEYLKRYHDIS---HLVETDPSEKNLNELAKLQEQLDHHNLWQLEN 137
Query: 149 RVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRL 208
R+ E L + L D ++ LSGG ++ RA + +LL+DEP + LD L
Sbjct: 138 RINEVLAQLGLD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWL 195
Query: 209 QDELLALQRKLKKTIVFVSHD 229
+ L Q +I+F+SHD
Sbjct: 196 EGFLKTFQ----GSIIFISHD 212
Score = 37.6 bits (88), Expect = 0.005
Identities = 53/185 (28%), Positives = 85/185 (45%), Gaps = 37/185 (20%)
Query: 52 VKKGEILVLMGLSGAGKSTLLRSING-LAPVVRGEVLVDTDKGFVNPYAADANVLRKLRM 110
V++G+ + L+G +G GK+TLL+ + G L G + T KL +
Sbjct: 342 VQRGDKIALIGPNGCGKTTLLKLMLGQLQAD-SGRIHCGT----------------KLEV 384
Query: 111 HTVSMVFQQF--ALLPWRTVARNVELGLEFLDIPDVE---RKSRVAEHL-EIVNLTKWAD 164
F Q L P +TV N+ G + +V R V +L + + K A
Sbjct: 385 ----AYFDQHRAELDPEKTVMDNLAEGKQ-----EVMVNGRPRHVLGYLQDFLFHPKRAM 435
Query: 165 CKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIV 224
+ LSGG + R+ AR F + +L++DEP + LD + + L +ELL + T++
Sbjct: 436 TPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLD-VETLELLEELLD---SYQGTVL 491
Query: 225 FVSHD 229
VSHD
Sbjct: 492 LVSHD 496
>gnl|CDD|182707 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 61.9 bits (151), Expect = 2e-10
Identities = 59/216 (27%), Positives = 107/216 (49%), Gaps = 20/216 (9%)
Query: 42 VSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVL-VDTDKGFVNPYAA 100
V A+ A L V G ++ L+G +GAGKST+++ + G+ G +L + + F P ++
Sbjct: 17 VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSS 76
Query: 101 DANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLD-IPDVERKSRVAEH---LEI 156
+ ++ Q+ L+P T+A N+ LG EF++ ++ K AE L
Sbjct: 77 QEA--------GIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLAR 128
Query: 157 VNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQ 216
+NL +D + LS G +Q V A+ + + +++MDEP +L + L +
Sbjct: 129 LNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTD----TETESLFRVI 184
Query: 217 RKLKKT---IVFVSHDINEAFRLGNRIAIMEGGRII 249
R+LK IV++SH + E F + + + + G+ I
Sbjct: 185 RELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFI 220
Score = 45.0 bits (107), Expect = 3e-05
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 167 INMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKK---TI 223
I +LSGG +Q+V AR T +L++DEP +D + + E+ L + K +I
Sbjct: 393 IGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVD----VGAKKEIYQLINQFKAEGLSI 448
Query: 224 VFVSHDINEAFRLGNRIAIMEGGRI 248
+ VS ++ E + +RI +M GRI
Sbjct: 449 ILVSSEMPEVLGMSDRILVMHEGRI 473
Score = 38.4 bits (90), Expect = 0.003
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 43 SAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD 89
V + ++KGEIL + GL GAG++ L++ + G P G V +D
Sbjct: 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLD 312
>gnl|CDD|140270 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 60.9 bits (148), Expect = 4e-10
Identities = 55/215 (25%), Positives = 94/215 (43%), Gaps = 50/215 (23%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
++ V +G++ V++G +G+GKSTLL+S+ + G V +
Sbjct: 680 SVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE------------------- 720
Query: 109 RMHTVSMVFQQFALLPW---RTVARNVELGLEFLDIPDVERKSRVAEHLEIVNL------ 159
+++ V QQ W TV N+ L F D E +R+A+ + + L
Sbjct: 721 --RSIAYVPQQ----AWIMNATVRGNI---LFF----DEEDAARLADAVRVSQLEADLAQ 767
Query: 160 ------TKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELL 213
T+ + +N LSGG K RV ARA + L+D+P S+LD + R+ +E
Sbjct: 768 LGGGLETEIGEKGVN-LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECF 826
Query: 214 ALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRI 248
L KT V +H ++ + + + GR+
Sbjct: 827 -LGALAGKTRVLATHQVH-VVPRADYVVALGDGRV 859
Score = 52.5 bits (126), Expect = 2e-07
Identities = 67/256 (26%), Positives = 116/256 (45%), Gaps = 67/256 (26%)
Query: 60 LMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMHTVSMVFQQ 119
++G +G+GKSTLL + + V GE+ VN A LR+LR +Q
Sbjct: 1341 IVGRTGSGKSTLLLTFMRMVEVCGGEIR-------VNGREIGAYGLRELR--------RQ 1385
Query: 120 FALLPWR------TVARNVELGLEFLDIPDVERKSRVAEHLEIVNL-------TKWADCK 166
F+++P TV +NV+ FL+ E V LE+V L ++ D +
Sbjct: 1386 FSMIPQDPVLFDGTVRQNVD---PFLEASSAE----VWAALELVGLRERVASESEGIDSR 1438
Query: 167 INMLSGGMKQRVG------FARA-FATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKL 219
+ L GG VG ARA G+ +LMDE +++DP AL R++
Sbjct: 1439 V--LEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDP-----------ALDRQI 1485
Query: 220 KKTIV--FVSHD-INEAFRLG-----NRIAIMEGGRIIQCGTPQEIILHPANCYVSEFIQ 271
+ T++ F ++ I A RL ++I +M+ G + + G+P+E++++ S F
Sbjct: 1486 QATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQ----SIFHS 1541
Query: 272 KLNPITALVAADVMRV 287
+ + A +++
Sbjct: 1542 MVEALGRSEAKRFLQL 1557
>gnl|CDD|130031 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved.
Length = 1522
Score = 61.1 bits (148), Expect = 4e-10
Identities = 62/220 (28%), Positives = 102/220 (46%), Gaps = 38/220 (17%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAA-------D 101
+ +G ++ ++G G GKS+LL ++ V G V + +V P A
Sbjct: 658 TFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYV-PQQAWIQNDSLR 716
Query: 102 ANVL--RKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNL 159
N+L + L V + ALLP LE L P +R
Sbjct: 717 ENILFGKALNEKYYQQVLEACALLP----------DLEIL--PSGDR------------- 751
Query: 160 TKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKL 219
T+ + +N LSGG KQRV ARA + A I L D+P S++D + + + ++ + L
Sbjct: 752 TEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVL 810
Query: 220 K-KTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEII 258
K KT + V+H I+ ++ + I +M GG+I + G+ QE++
Sbjct: 811 KNKTRILVTHGISYLPQV-DVIIVMSGGKISEMGSYQELL 849
Score = 38.0 bits (88), Expect = 0.003
Identities = 49/229 (21%), Positives = 97/229 (42%), Gaps = 46/229 (20%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
N+ + GE + ++G +GAGKS+L + + GE+++D +N + K+
Sbjct: 1306 NVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDG----LN--------IAKI 1353
Query: 109 RMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADC--- 165
+H + + ++P V + L + LD V LE+ +L +
Sbjct: 1354 GLHDLRF---KITIIPQDPVLFSGSLRMN-LDPFSQYSDEEVWWALELAHLKTFVSALPD 1409
Query: 166 KINM--------LSGGMKQRVGFARAFATGAPILLMDEPFSSLD--------PLIRMRLQ 209
K++ LS G +Q V ARA IL++DE +++D IR + +
Sbjct: 1410 KLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFE 1469
Query: 210 DELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEII 258
D T++ ++H +N R+ +++ G + + G P ++
Sbjct: 1470 D----------CTVLTIAHRLNTIMDY-TRVIVLDKGEVAEFGAPSNLL 1507
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
Provisional.
Length = 549
Score = 60.7 bits (147), Expect = 5e-10
Identities = 66/269 (24%), Positives = 116/269 (43%), Gaps = 31/269 (11%)
Query: 6 VKFRDVDIVFGETSNKIRKRSRYSIKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSG 65
VKF V + + K + D Y A+ + EV +GEI+ ++GL+G
Sbjct: 5 VKFEHVTKKYKMYNKPFDKLKDLFFRSKDGEYHY----ALNNISFEVPEGEIVGIIGLNG 60
Query: 66 AGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMHTVSMVFQQFALLPW 125
+GKSTL I G+ +G V + KG A + + +L
Sbjct: 61 SGKSTLSNLIAGVTMPNKGTVDI---KGSAALIAISSGLNGQL----------------- 100
Query: 126 RTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFA 185
T N+EL + + + K + E +E ++ K+ + S GMK R+GFA +
Sbjct: 101 -TGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVH 159
Query: 186 TGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEG 245
IL++DE S D + D++ + + KTI F+SH +++ + +
Sbjct: 160 INPDILVIDEALSVGDQTFTKKCLDKMNEFKEQ-GKTIFFISHSLSQVKSFCTKALWLHY 218
Query: 246 GRIIQCGTPQEIILHPANCYVSEFIQKLN 274
G++ + G +E++ H EF++K N
Sbjct: 219 GQVKEYGDIKEVVDH-----YDEFLKKYN 242
>gnl|CDD|178750 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 59.5 bits (144), Expect = 1e-09
Identities = 61/186 (32%), Positives = 82/186 (44%), Gaps = 27/186 (14%)
Query: 55 GEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMHTVS 114
GEIL ++G SG+GKSTLL N LA ++G F A+ K +
Sbjct: 94 GEILAVLGPSGSGKSTLL---NALAGRIQGN-------NFTGTILANNRKPTKQILKRTG 143
Query: 115 MVFQQFALLPWRTVARNVELGLEFLDIPDV---ERKSRVAEH-LEIVNLTKWADCK---- 166
V Q L P TV R + L +P + K VAE + + LTK C+
Sbjct: 144 FVTQDDILYPHLTV-RETLVFCSLLRLPKSLTKQEKILVAESVISELGLTK---CENTII 199
Query: 167 ----INMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKT 222
I +SGG ++RV A +L++DEP S LD RL L +L +K KT
Sbjct: 200 GNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQK-GKT 258
Query: 223 IVFVSH 228
IV H
Sbjct: 259 IVTSMH 264
>gnl|CDD|178676 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 56.7 bits (137), Expect = 9e-09
Identities = 58/218 (26%), Positives = 108/218 (49%), Gaps = 35/218 (16%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSING-LAPVVRGEVLVDTDKGFVNPYAADANVLRK 107
NL+V G ++ ++G +G GK++L+ ++ G L P V++ +V
Sbjct: 637 NLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVP----------- 685
Query: 108 LRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAE---HLEIV---NLTK 161
VS +F TV N+ G F D ER V L+++ +LT+
Sbjct: 686 ----QVSWIFNA-------TVRDNILFGSPF-DPERYERAIDVTALQHDLDLLPGGDLTE 733
Query: 162 WADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLK- 220
+ +N +SGG KQRV ARA + + + + D+P S+LD + ++ D+ ++ +L+
Sbjct: 734 IGERGVN-ISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDK--CIKDELRG 790
Query: 221 KTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEII 258
KT V V++ ++ ++ +RI ++ G I + GT +E+
Sbjct: 791 KTRVLVTNQLHFLSQV-DRIILVHEGMIKEEGTYEELS 827
Score = 37.8 bits (88), Expect = 0.004
Identities = 52/233 (22%), Positives = 106/233 (45%), Gaps = 58/233 (24%)
Query: 51 EVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANV----LR 106
E+ E + ++G +GAGKS++L ++ + + RG +L+D ++ L
Sbjct: 1261 EISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILID-----------GCDISKFGLM 1309
Query: 107 KLRMHTVSMVFQ---------QFALLPWRTVARNVEL--GLEFLDIPDVERK------SR 149
LR + ++ Q +F L P+ + +L LE + DV R+ +
Sbjct: 1310 DLR-KVLGIIPQAPVLFSGTVRFNLDPFNE-HNDADLWESLERAHLKDVIRRNSLGLDAE 1367
Query: 150 VAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLD----PLIR 205
V+E E S G +Q + ARA + IL++DE +++D LI+
Sbjct: 1368 VSEAGE-------------NFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQ 1414
Query: 206 MRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEII 258
+++E + T++ ++H +N +RI +++ GR+++ TP+ ++
Sbjct: 1415 KTIREEFKSC------TMLIIAHRLNTIIDC-DRILVLDAGRVVEFDTPENLL 1460
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 56.3 bits (136), Expect = 1e-08
Identities = 52/197 (26%), Positives = 80/197 (40%), Gaps = 36/197 (18%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD-TDKGFVNPYAADANVLRK 107
+ ++ GE ++ G SG GKSTLL+ + L G +L + D + P R+
Sbjct: 27 SFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEI-----YRQ 81
Query: 108 LRMHTVSMVFQQFAL----------LPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIV 157
VS Q L PW+ RN PD E +
Sbjct: 82 ----QVSYCAQTPTLFGDTVYDNLIFPWQI--RN--------QQPDPAIFLDDLERFALP 127
Query: 158 N--LTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLAL 215
+ LTK I LSGG KQR+ R +LL+DE S+LD + + + +
Sbjct: 128 DTILTK----NIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRY 183
Query: 216 QRKLKKTIVFVSHDINE 232
R+ +++V+HD +E
Sbjct: 184 VREQNIAVLWVTHDKDE 200
>gnl|CDD|163509 TIGR03797, NHPM_micro_ABC2, NHPM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal propeptide
cleavage domain, and an HlyD homolog (TIGR03794). In a
number of genomes, a conserved propeptide sequence with
a classic Gly-Gly motif.
Length = 686
Score = 55.4 bits (134), Expect = 2e-08
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 11/92 (11%)
Query: 170 LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSH- 228
LSGG +QR+ ARA ILL DE S+LD R Q + +LK T + ++H
Sbjct: 589 LSGGQRQRLLIARALVRKPRILLFDEATSALDN----RTQAIVSESLERLKVTRIVIAHR 644
Query: 229 --DINEAFRLGNRIAIMEGGRIIQCGTPQEII 258
I A +RI +++ GR++Q GT E++
Sbjct: 645 LSTIRNA----DRIYVLDAGRVVQQGTYDELM 672
Score = 34.6 bits (80), Expect = 0.039
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD 89
+L+++ GE + ++G SG+GKSTLLR + G G V D
Sbjct: 473 SLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYD 513
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 54.5 bits (132), Expect = 4e-08
Identities = 59/210 (28%), Positives = 87/210 (41%), Gaps = 68/210 (32%)
Query: 60 LMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMHTVSMVFQQ 119
++GL+GAGKSTLLR + G+ DK F + V + Q+
Sbjct: 36 VLGLNGAGKSTLLRIMAGV------------DKEFNGEARPAPGI-------KVGYLPQE 76
Query: 120 FALLPWRTVARNVELGL--------EFLDI------PDVERKSRVAEH------------ 153
L P +TV NVE G+ F +I PD + + +AE
Sbjct: 77 PQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADA 136
Query: 154 ------LEIV----NLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPL 203
LEI W D + LSGG ++RV R + +LL+DEP + LD
Sbjct: 137 WDLDRKLEIAMDALRCPPW-DADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDA- 194
Query: 204 IRMRLQDELLA-LQRKLKK---TIVFVSHD 229
E +A L++ L++ T+V V+HD
Sbjct: 195 -------ESVAWLEQHLQEYPGTVVAVTHD 217
Score = 54.2 bits (131), Expect = 5e-08
Identities = 54/182 (29%), Positives = 82/182 (45%), Gaps = 31/182 (17%)
Query: 52 VKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLV-DTDKGFVNPYAADANVLRKLRM 110
+ G I+ ++G +GAGKSTL R I G G + + +T K
Sbjct: 345 LPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVK------------------ 386
Query: 111 HTVSMVFQQF-ALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADC--KI 167
++ V Q AL P +TV + GL+ + + E SR ++ N K +D K+
Sbjct: 387 --LAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRA--YVGRFNF-KGSDQQKKV 441
Query: 168 NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVS 227
LSGG + RV A+ +G +LL+DEP + LD L++ LL V +S
Sbjct: 442 GQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLE----FAGCAVVIS 497
Query: 228 HD 229
HD
Sbjct: 498 HD 499
>gnl|CDD|173501 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional.
Length = 1466
Score = 54.3 bits (130), Expect = 5e-08
Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 7/131 (5%)
Query: 105 LRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIV-NLTKWA 163
L+ LR + S+V Q+ L ++ N++ G E DV+R + A E + +L
Sbjct: 1291 LKDLR-NLFSIVSQEPMLFN-MSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKY 1348
Query: 164 DCKI----NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKL 219
D + LSGG KQR+ ARA ILL+DE SSLD ++ ++ ++ K
Sbjct: 1349 DTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKA 1408
Query: 220 KKTIVFVSHDI 230
KTI+ ++H I
Sbjct: 1409 DKTIITIAHRI 1419
Score = 42.3 bits (99), Expect = 2e-04
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 170 LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSHD 229
LSGG KQR+ ARA IL++DE SSLD +Q + L+ + + ++H
Sbjct: 580 LSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHR 639
Query: 230 I------NEAFRLGNR 239
+ N F L NR
Sbjct: 640 LSTIRYANTIFVLSNR 655
Score = 30.8 bits (69), Expect = 0.53
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD 89
N + +G+ +G SG GKST+L+ I L G+++++
Sbjct: 405 NFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIIN 445
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 54.2 bits (130), Expect = 5e-08
Identities = 44/177 (24%), Positives = 77/177 (43%), Gaps = 19/177 (10%)
Query: 54 KGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMHTV 113
G +L L G +GAGK+TLL+ I GL +GE+L + ++ + L +
Sbjct: 26 AGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQ-----------SIKKDLCTYQK 74
Query: 114 SMVF--QQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKINMLS 171
+ F + + P+ T+ N DI + E + +L D +LS
Sbjct: 75 QLCFVGHRSGINPYLTLRENC-----LYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLS 129
Query: 172 GGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSH 228
G K++V R + + A + L+DEP +LD L + + ++ R ++ SH
Sbjct: 130 SGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQE-HRAKGGAVLLTSH 185
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 53.6 bits (129), Expect = 8e-08
Identities = 63/225 (28%), Positives = 106/225 (47%), Gaps = 38/225 (16%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADAN-VLRK 107
NL V + L+G +G+GKSTL + G P+ GE+ +D P ++ ++ VLR+
Sbjct: 361 NLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDG-----RPLSSLSHSVLRQ 415
Query: 108 LRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADC-- 165
V+MV QQ ++ T NV LG + + +V + LE V L + A
Sbjct: 416 ----GVAMV-QQDPVVLADTFLANVTLGRDI-------SEEQVWQALETVQLAELARSLP 463
Query: 166 ---------KINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQ 216
+ N LS G KQ + AR IL++DE +++D +Q L A++
Sbjct: 464 DGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVR 523
Query: 217 RKLKKTIVFVSH---DINEAFRLGNRIAIMEGGRIIQCGTPQEII 258
T+V ++H I EA + I ++ G+ ++ GT Q+++
Sbjct: 524 E--HTTLVVIAHRLSTIVEA----DTILVLHRGQAVEQGTHQQLL 562
>gnl|CDD|162131 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein.
Length = 1394
Score = 53.2 bits (128), Expect = 1e-07
Identities = 53/236 (22%), Positives = 89/236 (37%), Gaps = 39/236 (16%)
Query: 42 VSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSI----NGLAPVVRGEVLVD--TDKGFV 95
+ +IK GE+ V++G G+G STLL++I +G V G + D T +
Sbjct: 80 MDGLIKP------GELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK 133
Query: 96 NPYAADANVLRKLRMHTVSMVFQQ---FALLPWRTVARNVELGLEFLDIPDVERKSRVAE 152
Y D + +H + + FA +T + V R+ A+
Sbjct: 134 KHYRGDVVYNAETDVHFPHLTVGETLDFAAR-CKTPQNRPDG---------VSREEY-AK 182
Query: 153 HLEIVNL----------TKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDP 202
H+ V + TK + + +SGG ++RV A A GA I D LD
Sbjct: 183 HIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDS 242
Query: 203 LIRMRLQDELLALQRKLKKTIVFVS--HDINEAFRLGNRIAIMEGGRIIQCGTPQE 256
+ L L T V+ +A+ L +++ ++ G I G +
Sbjct: 243 ATALEFIRALKTSANILDTT-PLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADK 297
Score = 49.7 bits (119), Expect = 1e-06
Identities = 49/160 (30%), Positives = 75/160 (46%), Gaps = 21/160 (13%)
Query: 52 VKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMH 111
VK G + LMG SGAGK+TLL N LA V V+ D+ VN D++ R
Sbjct: 786 VKPGTLTALMGASGAGKTTLL---NVLAERVTTGVITGGDR-LVNGRPLDSSFQR----- 836
Query: 112 TVSMVFQQFALLPWRTVARNVELGLEFL----DIPDVERKSRVAEHLEIVNLTKWADCKI 167
++ V QQ LP TV ++ +L + E+ V E ++++ + +AD +
Sbjct: 837 SIGYVQQQDLHLPTSTVRESLRFS-AYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVV 895
Query: 168 NMLSGGM--KQR----VGFARAFATGAPILLMDEPFSSLD 201
+ G+ +QR +G A +L +DEP S LD
Sbjct: 896 GVPGEGLNVEQRKRLTIGVELV-AKPKLLLFLDEPTSGLD 934
>gnl|CDD|178771 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 53.1 bits (127), Expect = 1e-07
Identities = 60/222 (27%), Positives = 112/222 (50%), Gaps = 45/222 (20%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
NLE+ G ++ ++G +G GK++L+ ++ GE+ +A ++V+ +
Sbjct: 637 NLEIPVGSLVAIVGGTGEGKTSLISAM-------LGEL----------SHAETSSVVIR- 678
Query: 109 RMHTVSMVFQQFALLPW---RTVARNVELGLEFLDIPDVERKSRVAE------HLEIV-- 157
+V+ V Q + W TV N+ G +F + ER R + L+++
Sbjct: 679 --GSVAYVPQ----VSWIFNATVRENILFGSDF----ESERYWRAIDVTALQHDLDLLPG 728
Query: 158 -NLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQ 216
+LT+ + +N +SGG KQRV ARA + + I + D+P S+LD + ++ D ++
Sbjct: 729 RDLTEIGERGVN-ISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDS--CMK 785
Query: 217 RKLK-KTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257
+LK KT V V++ ++ L +RI ++ G I + GT E+
Sbjct: 786 DELKGKTRVLVTNQLH-FLPLMDRIILVSEGMIKEEGTFAEL 826
Score = 47.7 bits (113), Expect = 4e-06
Identities = 57/270 (21%), Positives = 114/270 (42%), Gaps = 41/270 (15%)
Query: 26 SRYSIKKHDKVSEY--GMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVR 83
SR SIK D Y G+ + + V E + ++G +GAGKS++L ++ + + +
Sbjct: 1231 SRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEK 1290
Query: 84 GEVLVDTDKGFVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVE---------- 133
G +++D D + V + Q +L TV N++
Sbjct: 1291 GRIMID---------DCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADL 1341
Query: 134 -LGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILL 192
LE I DV ++ E+ + S G +Q + ARA + IL+
Sbjct: 1342 WEALERAHIKDVIDRNPFGLDAEVSEGGE-------NFSVGQRQLLSLARALLRRSKILV 1394
Query: 193 MDEPFSSL----DPLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRI 248
+DE +S+ D LI+ +++E + T++ ++H +N ++I ++ G++
Sbjct: 1395 LDEATASVDVRTDSLIQRTIREEFKSC------TMLVIAHRLNTIIDC-DKILVLSSGQV 1447
Query: 249 IQCGTPQEIILHPANCYVSEFIQKLNPITA 278
++ +PQE++ + + + P A
Sbjct: 1448 LEYDSPQELLSRDTSAF-FRMVHSTGPANA 1476
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 48.1 bits (115), Expect = 3e-06
Identities = 57/205 (27%), Positives = 88/205 (42%), Gaps = 49/205 (23%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAP------VV-------RGEVLVDTDK--G 93
+ +V GE ++G +GAGKSTLL I G P + GE + D K G
Sbjct: 280 SWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIG 339
Query: 94 FVNPYAADANVLRKLRMHTVSMVFQQFALLPWR--TVARNVELGLEFLD-------IPDV 144
+V+ +H L +R T RNV L F D + D
Sbjct: 340 YVSS-----------SLH-----------LDYRVSTSVRNVILS-GFFDSIGIYQAVSDR 376
Query: 145 ERKSRVAEHLEIVNLTKW-ADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPL 203
++K + L+I+ + K AD + LS G ++ RA +L++DEP LDPL
Sbjct: 377 QQK-LAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPL 435
Query: 204 IRMRLQDELLALQRKLKKTIVFVSH 228
R ++ + L + + ++FVSH
Sbjct: 436 NRQLVRRFVDVLISEGETQLLFVSH 460
Score = 43.9 bits (104), Expect = 7e-05
Identities = 53/217 (24%), Positives = 94/217 (43%), Gaps = 25/217 (11%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
+L + G+ +G +G+GKS L R++ G P++ GE F + L+KL
Sbjct: 23 SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGER----QSQFSHITRLSFEQLQKL 78
Query: 109 RMHTVSMVFQQF---ALLPW-----RTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLT 160
VS +Q+ L P RT A ++ ++ D R ++A+ I L
Sbjct: 79 ----VSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVK-----DPARCEQLAQQFGITALL 129
Query: 161 KWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLK 220
D + LS G ++ +A + +L++DEPF LD R +L + L +L +
Sbjct: 130 ---DRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQS-G 185
Query: 221 KTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257
T+V V + +E ++ + + G +EI
Sbjct: 186 ITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEI 222
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 47.5 bits (114), Expect = 5e-06
Identities = 42/163 (25%), Positives = 67/163 (41%), Gaps = 32/163 (19%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108
+ + GE++ + G +GAGK++LLR + G L D G V +
Sbjct: 21 SFTLNAGELVQIEGPNGAGKTSLLRILAG---------LARPDAGEVL--------WQGE 63
Query: 109 RMHTVSMVFQQFALL---------PWRTVARNVELGLEFL-DIPDVERKSRVAEHLEIVN 158
+ + Q LL T N L F + + E L V
Sbjct: 64 PIRRQRDEYHQ-DLLYLGHQPGIKTELTALEN----LRFYQRLHGPGDDEALWEALAQVG 118
Query: 159 LTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLD 201
L + D + LS G ++RV AR + T AP+ ++DEPF+++D
Sbjct: 119 LAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAID 161
>gnl|CDD|183324 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 46.3 bits (111), Expect = 1e-05
Identities = 59/214 (27%), Positives = 83/214 (38%), Gaps = 71/214 (33%)
Query: 57 ILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMHTVSMV 116
I VL GL+GAGKSTLLR + G+ GE G V +
Sbjct: 36 IGVL-GLNGAGKSTLLRIMAGVDKEFEGEARPA--PGI-----------------KVGYL 75
Query: 117 FQQFALLPWRTVARNVELGL--------EFLDI------PD------VERKSRVAEHLEI 156
Q+ L P +TV NVE G+ F +I PD + + E ++
Sbjct: 76 PQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDA 135
Query: 157 VNLTKW-----------------ADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSS 199
+ W D K+ LSGG ++RV R +LL+DEP +
Sbjct: 136 ADA--WDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNH 193
Query: 200 LDPLIRMRLQDELLA-LQRKLKK---TIVFVSHD 229
LD E +A L++ L T+V V+HD
Sbjct: 194 LDA--------ESVAWLEQFLHDYPGTVVAVTHD 219
Score = 46.3 bits (111), Expect = 1e-05
Identities = 43/164 (26%), Positives = 67/164 (40%), Gaps = 51/164 (31%)
Query: 54 KGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLV-DTDK-GFVNPYAADANVLRKLRMH 111
G I+ ++G +GAGKSTL + I G G + + +T K +V+
Sbjct: 349 PGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVD--------------- 393
Query: 112 TVSMVFQQF--ALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADC---- 165
Q AL P +TV + GL+ + + + E SR A
Sbjct: 394 -------QSRDALDPNKTVWEEISGGLDIIKVGNREIPSR-------------AYVGRFN 433
Query: 166 --------KINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLD 201
K+ +LSGG + R+ A+ G +LL+DEP + LD
Sbjct: 434 FKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLD 477
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 46.3 bits (111), Expect = 1e-05
Identities = 54/227 (23%), Positives = 95/227 (41%), Gaps = 31/227 (13%)
Query: 6 VKFRDVDIVFGETSNKIRKRSRYSIKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSG 65
++ R I F E + ++ D + G S ++ E+ +GE++ ++G +G
Sbjct: 317 MRIRPEPIEFEERPPRDESERETLVEYPDLTKKLGDFSLEVEGG-EIYEGEVIGIVGPNG 375
Query: 66 AGKSTLLRSING-LAPVVRGEVLVDTDKGFVNPY-AADANVLRKLRMHTVSMVFQQFALL 123
GK+T + + G L P GEV + + Y D + TV +
Sbjct: 376 IGKTTFAKLLAGVLKPD-EGEVDPELKISYKPQYIKPDYDG-------TVEDLL------ 421
Query: 124 PWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARA 183
R++ + LG + KS + + L L + D + LSGG QRV A
Sbjct: 422 --RSITDD--LGSSYY-------KSEIIKPL---QLERLLDKNVKDLSGGELQRVAIAAC 467
Query: 184 FATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSHDI 230
+ A + L+DEP + LD R+ + + + + + T + V HDI
Sbjct: 468 LSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDI 514
Score = 42.5 bits (101), Expect = 1e-04
Identities = 54/196 (27%), Positives = 86/196 (43%), Gaps = 37/196 (18%)
Query: 52 VKKGEILVLMGLSGAGKSTLLRSING-LAPVVRGEVLVDTDKGFVNPYAADANVLRKLR- 109
K+G++ ++G +G GK+T ++ ++G L P L D ++ + D VL++ R
Sbjct: 96 PKEGKVTGILGPNGIGKTTAVKILSGELIPN-----LGDYEE----EPSWD-EVLKRFRG 145
Query: 110 --MHT-----------VSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEI 156
+ V Q L+P + V L+ +D ER ++ E +E
Sbjct: 146 TELQNYFKKLYNGEIKVVHKPQYVDLIP-KVFKGKVRELLKKVD----ERG-KLDEVVER 199
Query: 157 VNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQ 216
+ L D I+ LSGG QRV A A A DEP S LD R+ + L
Sbjct: 200 LGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVAR----LI 255
Query: 217 RKL--KKTIVFVSHDI 230
R+L K ++ V HD+
Sbjct: 256 RELAEGKYVLVVEHDL 271
>gnl|CDD|162277 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or
lesions in the genetic loci have been linked to the
aetiology of asthma, bronchiectasis, chronic obstructive
pulmonary disease etc. Disease-causing mutations have
been studied by 36Cl efflux assays in vitro cell
cultures and electrophysiology, all of which point to
the impairment of chloride channel stability and not the
biosynthetic processing per se.
Length = 1490
Score = 46.1 bits (109), Expect = 1e-05
Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 41/172 (23%)
Query: 42 VSAVIK-ANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAA 100
V+ V+K + +++KG++L + G +G+GKS+LL ++ GE L ++
Sbjct: 438 VTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLM-------MIMGE-LEPSEG-------- 481
Query: 101 DANVLRKLRMHTVSMVFQ-QFALLPWRTVARNVELGLEFLDIPDVERKSRV--AEHLEIV 157
K++ H+ + F Q + + T+ N+ GL + D R + V A LE
Sbjct: 482 ------KIK-HSGRISFSPQTSWIMPGTIKDNIIFGLSY----DEYRYTSVIKACQLE-E 529
Query: 158 NLTKWADCKINM--------LSGGMKQRVGFARAFATGAPILLMDEPFSSLD 201
++ + + K LSGG + R+ ARA A + L+D PF+ LD
Sbjct: 530 DIALFPE-KDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLD 580
Score = 46.1 bits (109), Expect = 2e-05
Identities = 55/226 (24%), Positives = 108/226 (47%), Gaps = 47/226 (20%)
Query: 52 VKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMH 111
V+ G+ + L+G +G+GKSTLL ++ L GE+ +D + ++ L+ R
Sbjct: 1242 VEGGQRVGLLGRTGSGKSTLLSALLRLLST-EGEIQIDG-------VSWNSVTLQTWR-- 1291
Query: 112 TVSMVFQQFALLPWR------TVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADC 165
+ F ++P + T +N++ ++ D E +VAE + + ++ +
Sbjct: 1292 ------KAFGVIPQKVFIFSGTFRKNLDPYEQWSD----EEIWKVAEEVGLKSVIEQFPD 1341
Query: 166 KIN--------MLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQR 217
K++ +LS G KQ + AR+ + A ILL+DEP + LDP+ L +++
Sbjct: 1342 KLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVT-------LQIIRK 1394
Query: 218 KLKK-----TIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEII 258
LK+ T++ H + EA + ++EG + Q + Q+++
Sbjct: 1395 TLKQSFSNCTVILSEHRV-EALLECQQFLVIEGSSVKQYDSIQKLL 1439
>gnl|CDD|178685 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 45.6 bits (108), Expect = 2e-05
Identities = 59/218 (27%), Positives = 94/218 (43%), Gaps = 34/218 (15%)
Query: 53 KKGEILVLMGLSGAGKSTLLRSING--LAPVVRGEVLVDTDKGFVNPYAADANVLRKLRM 110
+ G + LMG+SGAGK+TL+ + G + G++ + +A + + +
Sbjct: 904 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDI 963
Query: 111 H----TV--SMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWAD 164
H TV S+++ F LP E+ E E+ V E +E+V L D
Sbjct: 964 HSPQVTVRESLIYSAFLRLP-------KEVSKE-------EKMMFVDEVMELVELDNLKD 1009
Query: 165 CKINM-----LSGGMKQRVGFARAFATGAPILLMDEPFSSLD---PLIRMRLQDELLALQ 216
+ + LS ++R+ A I+ MDEP S LD I MR +
Sbjct: 1010 AIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1069
Query: 217 RKLKKTIVFVSHDINEAFRLGNRIAIME-GGRIIQCGT 253
R + TI S DI EAF + + +M+ GG++I G
Sbjct: 1070 RTVVCTIHQPSIDIFEAF---DELLLMKRGGQVIYSGP 1104
Score = 27.1 bits (60), Expect = 6.7
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 8/110 (7%)
Query: 154 LEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELL 213
L+I T D I +SGG K+RV L MDE + LD ++ +
Sbjct: 321 LDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQI---VK 377
Query: 214 ALQR--KLKKTIVFVS--HDINEAFRLGNRIAIMEGGRIIQCGTPQEIIL 259
LQ+ L + V +S E F L + I ++ G+I+ G P++ IL
Sbjct: 378 CLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQG-PRDHIL 426
>gnl|CDD|161968 TIGR00630, uvra, excinuclease ABC, A subunit. This family is based
on the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University).
Length = 924
Score = 45.4 bits (108), Expect = 2e-05
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 167 INMLSGGMKQRVGFARAFATG--APILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIV 224
LSGG QR+ A +G + ++DEP L RL + L L R L T++
Sbjct: 485 AGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRL-RDLGNTVI 543
Query: 225 FVSHDINEAFRLGNRI------AIMEGGRIIQCGTPQEIILHP 261
V HD E R + + A + GG ++ GTP+EI+ +P
Sbjct: 544 VVEHD-EETIRAADYVIDIGPGAGIHGGEVVASGTPEEILANP 585
Score = 32.7 bits (75), Expect = 0.14
Identities = 39/141 (27%), Positives = 63/141 (44%), Gaps = 35/141 (24%)
Query: 138 FLDIPDVERKSR--VAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAF---ATGAPILL 192
F +P + RK + L + L + A LSGG QR+ A+ +TG + +
Sbjct: 799 FEAVPSISRKLQTLCDVGLGYIKLGQPA----TTLSGGEAQRIKLAKELSKRSTGRTLYI 854
Query: 193 MDEPFSSL---DPLIRMRLQDELLALQRKLKK--TIVFVSHD---INEAFRL-------G 237
+DEP + L D I+ L+ LQR + + T+V + H+ I A + G
Sbjct: 855 LDEPTTGLHFDD--IKKLLE----VLQRLVDQGNTVVVIEHNLDVIKTADYIIDLGPEGG 908
Query: 238 NRIAIMEGGRIIQCGTPQEII 258
+ GG I+ GTP+E+
Sbjct: 909 DG-----GGTIVASGTPEEVA 924
Score = 31.9 bits (73), Expect = 0.24
Identities = 10/23 (43%), Positives = 20/23 (86%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTL 71
++E+ + +++V+ GLSG+GKS+L
Sbjct: 16 DVEIPRDKLVVITGLSGSGKSSL 38
Score = 28.1 bits (63), Expect = 3.2
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVV 82
+ + G + G+SG+GKSTL+ L P +
Sbjct: 627 TVSIPLGLFTCITGVSGSGKSTLINDT--LYPAL 658
>gnl|CDD|162636 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the
SUF system, shown in E. coli to consist of six proteins
and believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PubMed:12554644) or associated with the
membrane (PubMed:11943156). The SUF system also
includes a cysteine desulfurase (SufS, enhanced by
SufE) and a probable iron-sulfur cluster assembly
scaffold protein, SufA.
Length = 243
Score = 44.9 bits (107), Expect = 3e-05
Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSING--LAPVVRGEVLVD 89
NL VKKGEI +MG +G+GKSTL ++I G V G +L
Sbjct: 20 NLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFK 62
>gnl|CDD|162129 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei.
Length = 659
Score = 42.0 bits (99), Expect = 2e-04
Identities = 48/190 (25%), Positives = 72/190 (37%), Gaps = 26/190 (13%)
Query: 45 VIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTD-KGFV---NPYAA 100
+ + EV G L++ G +G GKS+L R + L PV G + K F PY
Sbjct: 468 IESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMT 527
Query: 101 DANVLRKLRMHTV--SMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVN 158
L LR + R + +L + LD + V
Sbjct: 528 ----LGTLRDQIIYPDSSEDMK-----RRGLSDKDL-EQILDNVQLTHILEREGGWSAV- 576
Query: 159 LTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRK 218
W D +LSGG KQR+ AR F ++DE S++ ++ + L R+
Sbjct: 577 -QDWMD----VLSGGEKQRIAMARLFYHKPQFAILDECTSAVSV----DVEGYMYRLCRE 627
Query: 219 LKKTIVFVSH 228
T+ VSH
Sbjct: 628 FGITLFSVSH 637
>gnl|CDD|185024 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 41.4 bits (98), Expect = 3e-04
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 166 KINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDEL-LALQRKLKKTIV 224
+ +LSGG K R+ F + +L+MDEP + +D M + L +AL+ K + T++
Sbjct: 435 SVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMD----MESIESLNMALE-KYEGTLI 489
Query: 225 FVSHDINEAFRLGNRIAIMEGGRII 249
FVSHD L RI + ++
Sbjct: 490 FVSHDREFVSSLATRIIEITPDGVV 514
Score = 34.5 bits (80), Expect = 0.044
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 173 GMKQRVGFARAFATGAPILLMDEPFSSLD-PLIRMRLQDELLALQRKLKKTIVFVSHD 229
G K RV A+A + ILL+DEP ++LD IR L+D L + T++ +SHD
Sbjct: 159 GWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRW-LEDVL----NERNSTMIIISHD 211
Score = 32.9 bits (76), Expect = 0.13
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEV 86
NL ++ GE L ++G +G GK+TLLR++ G G V
Sbjct: 339 NLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV 376
>gnl|CDD|178622 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 40.6 bits (95), Expect = 5e-04
Identities = 49/198 (24%), Positives = 77/198 (38%), Gaps = 35/198 (17%)
Query: 60 LMGLSGAGKSTLLR-----SINGL---APVVRGEVLVDTDKGFVNPYAADANVLRKLRMH 111
L+G +G GK+T LR +I+G+ ++ E V D + ++ R +
Sbjct: 208 LVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLE 267
Query: 112 TVSMVFQQFALLPWRTVARNVELG--------------------LEFLDIPDVERKSRVA 151
+ + Q L + T + LE +D E +R A
Sbjct: 268 EEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAE--ARAA 325
Query: 152 EHLEIVNLTKWADCK-INMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQD 210
L ++ T K SGG + R+ ARA +LL+DEP + LD + L+
Sbjct: 326 SILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLET 385
Query: 211 ELLALQRKLKKTIVFVSH 228
LL K KT + VSH
Sbjct: 386 YLL----KWPKTFIVVSH 399
Score = 36.8 bits (85), Expect = 0.008
Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 10/63 (15%)
Query: 170 LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKL---KKTIVFV 226
LSGG K RV FA+ ILL+DEP + LD D + AL + L + ++ V
Sbjct: 628 LSGGQKSRVAFAKITFKKPHILLLDEPSNHLD-------LDAVEALIQGLVLFQGGVLMV 680
Query: 227 SHD 229
SHD
Sbjct: 681 SHD 683
>gnl|CDD|128665 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 40.1 bits (93), Expect = 9e-04
Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Query: 169 MLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDE-----LLALQRKLKKTI 223
SG ++ R+ A A +L++DE S LD L LL L+ + T+
Sbjct: 60 SGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTV 119
Query: 224 VFVSHDINEAFRLGNRIAI 242
+ ++D + R
Sbjct: 120 ILTTNDEKDLGPALLRRRF 138
Score = 37.4 bits (86), Expect = 0.006
Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 54 KGEILVLMGLSGAGKSTLLRSI-NGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMHT 112
GE+++++G G+GK+TL R++ L P G + +D + ++ + +
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKAS 60
Query: 113 VSMVFQQFALLPWRTVARNVELGLEFLD 140
S + L +AR ++ + LD
Sbjct: 61 GS-GELRLRLA--LALARKLKPDVLILD 85
>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 195
Score = 38.3 bits (89), Expect = 0.003
Identities = 39/172 (22%), Positives = 67/172 (38%), Gaps = 18/172 (10%)
Query: 57 ILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMHTVSMV 116
I + G +G GKS+LLR I G+ G + Y + N+ + + +
Sbjct: 28 ITYIKGANGCGKSSLLRMIAGIMQPSSGNI-----------YYKNCNI-NNIAKPYCTYI 75
Query: 117 FQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKINMLSGGMKQ 176
L TV N++ E + + + L D K LS GM++
Sbjct: 76 GHNLGLKLEMTVFENLKFWSEIYN-----SAETLYAAIHYFKLHDLLDEKCYSLSSGMQK 130
Query: 177 RVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSH 228
V AR A + + L+DE ++L R L + L+ ++ ++ SH
Sbjct: 131 IVAIARLIACQSDLWLLDEVETNLSKENR-DLLNNLIVMKANSGGIVLLSSH 181
>gnl|CDD|182605 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 37.5 bits (87), Expect = 0.006
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 10/62 (16%)
Query: 171 SGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKK---TIVFVS 227
SGG + R+ A+A + +LL+DEP + LD D ++ L++ LK T++ +S
Sbjct: 151 SGGWRMRLNLAQALICRSDLLLLDEPTNHLD-------LDAVIWLEKWLKSYQGTLILIS 203
Query: 228 HD 229
HD
Sbjct: 204 HD 205
Score = 35.5 bits (82), Expect = 0.019
Identities = 64/205 (31%), Positives = 88/205 (42%), Gaps = 39/205 (19%)
Query: 32 KHDKVSE-YG--MVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSING-LAPVVRGEVL 87
K +KVS YG ++ IK NL G + L+G +GAGKSTL++ + G LAPV GE
Sbjct: 314 KMEKVSAGYGDRIILDSIKLNL--VPGSRIGLLGRNGAGKSTLIKLLAGELAPV-SGE-- 368
Query: 88 VDTDKGFVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVA---RNVELGLEFLDIPDV 144
+ KG Y A L LR + Q A L + + R+ G F
Sbjct: 369 IGLAKGIKLGYFAQHQ-LEFLRADESPL--QHLARLAPQELEQKLRDYLGGFGF------ 419
Query: 145 ERKSRVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLI 204
+ +V E SGG K R+ A +LL+DEP + LD +
Sbjct: 420 -QGDKVTEETR-------------RFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDM 465
Query: 205 RMRLQDELLALQRKLKKTIVFVSHD 229
R L + L+ + L V VSHD
Sbjct: 466 RQALTEALIDFEGAL----VVVSHD 486
>gnl|CDD|178861 PRK00098, PRK00098, GTPase RsgA; Reviewed.
Length = 298
Score = 36.3 bits (85), Expect = 0.012
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Query: 54 KGEILVLMGLSGAGKSTLLRSINGLAP 80
G++ VL G SG GKSTL +N LAP
Sbjct: 163 AGKVTVLAGQSGVGKSTL---LNALAP 186
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 35.5 bits (82), Expect = 0.022
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSING 77
NLEV+ GE+ +MG +G+GKSTL ++ G
Sbjct: 21 NLEVRPGEVHAIMGPNGSGKSTLSATLAG 49
>gnl|CDD|179346 PRK01889, PRK01889, GTPase RsgA; Reviewed.
Length = 356
Score = 34.1 bits (79), Expect = 0.054
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 52 VKKGEILVLMGLSGAGKSTLLRSINGL 78
+ G+ + L+G SG GKSTL +N L
Sbjct: 192 LSGGKTVALLGSSGVGKSTL---VNAL 215
>gnl|CDD|180120 PRK05506, PRK05506, bifunctional sulfate adenylyltransferase
subunit 1/adenylylsulfate kinase protein; Provisional.
Length = 632
Score = 32.6 bits (75), Expect = 0.16
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 42 VSAVIKANLEVKKGEILVLMGLSGAGKSTL 71
VS +A + +K + GLSG+GKST+
Sbjct: 447 VSREARAARKGQKPATVWFTGLSGSGKSTI 476
>gnl|CDD|179675 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 32.3 bits (74), Expect = 0.16
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 15/73 (20%)
Query: 167 INMLSGGMKQRVGFARAF--------ATGAPILLMDEPFSSLDPLIRMRLQDELLALQRK 218
+ LSGG +R+ AF A P+L++DEP LD R +L D ++R
Sbjct: 786 LTFLSGG--ERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVD---IMERY 840
Query: 219 LKK--TIVFVSHD 229
L+K ++ VSHD
Sbjct: 841 LRKIPQVIIVSHD 853
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University).
Length = 1042
Score = 32.2 bits (73), Expect = 0.19
Identities = 23/77 (29%), Positives = 29/77 (37%), Gaps = 13/77 (16%)
Query: 170 LSGGMKQRVGFARAFA----------TGAPILLMDEPFSSLDPLIRMRLQDELLALQRKL 219
LSGG + A A T L +DE F SLD R L A+ R+
Sbjct: 951 LSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAI-REG 1009
Query: 220 KKTIVFVSH--DINEAF 234
K I +SH + E
Sbjct: 1010 SKMIGIISHVPEFRERI 1026
>gnl|CDD|180064 PRK05416, PRK05416, glmZ(sRNA)-inactivating NTPase; Provisional.
Length = 288
Score = 32.0 bits (74), Expect = 0.21
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 56 EILVLMGLSGAGKSTLLRS 74
++++ GLSGAGKS LR+
Sbjct: 7 RLVIVTGLSGAGKSVALRA 25
>gnl|CDD|178835 PRK00064, recF, recombination protein F; Reviewed.
Length = 361
Score = 32.1 bits (74), Expect = 0.21
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 10/67 (14%)
Query: 188 APILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVS----HDINEAFRLGNRIAIM 243
APILL+D+ S LD R L + L L VF++ D+ + +
Sbjct: 301 APILLLDDVASELDDGRRAALLERLKGL-----GAQVFITTTDLEDLADLLENAKIFHV- 354
Query: 244 EGGRIIQ 250
E G+I
Sbjct: 355 EQGKITD 361
>gnl|CDD|183407 PRK12289, PRK12289, GTPase RsgA; Reviewed.
Length = 352
Score = 31.9 bits (73), Expect = 0.24
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 46 IKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVV 82
++A LE + +I V+ G SG GKS+L IN L P V
Sbjct: 163 LEALLEQLRNKITVVAGPSGVGKSSL---INRLIPDV 196
>gnl|CDD|149613 pfam08619, Nha1_C, Alkali metal cation/H+ antiporter Nha1 C
terminus. The C terminus of the plasma membrane Nha1
antiporter plays an important role in the immediate cell
response to hypo-osmotic shock which prevents an
execessive loss of ions and water. This domain is found
with pfam00999.
Length = 425
Score = 31.7 bits (72), Expect = 0.28
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 9/65 (13%)
Query: 27 RYSIKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEV 86
RY I H K S V +A L +GL G K +R I L P R EV
Sbjct: 263 RYKINPHKKPERPRSNSVVSRA---------LSWVGLKGMTKHDFIRQIRNLDPKARREV 313
Query: 87 LVDTD 91
+++++
Sbjct: 314 VLESN 318
>gnl|CDD|185549 PTZ00311, PTZ00311, phosphoenolpyruvate carboxykinase; Provisional.
Length = 561
Score = 31.6 bits (72), Expect = 0.32
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 53 KKGEILVLMGLSGAGKSTL 71
KKG++ + GLSG GK+TL
Sbjct: 254 KKGDVTLFFGLSGTGKTTL 272
>gnl|CDD|132282 TIGR03238, dnd_assoc_3, dnd system-associated protein 3. cereus
E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas
haloplanktis TAC12, and Escherichia coli B7A.
Length = 504
Score = 31.0 bits (70), Expect = 0.50
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 10/76 (13%)
Query: 45 VIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANV 104
++K N E+ +L L G SG GKS +L N E +D F +P
Sbjct: 22 LVKFNKELPSSSLLFLCGSSGDGKSEILAE-NKRKFSEGYEFFLDATHSF-SP------- 72
Query: 105 LRKLRMHTVSMVFQQF 120
K M T+ +F F
Sbjct: 73 -NKNAMETLDEIFDGF 87
>gnl|CDD|167016 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 31.0 bits (70), Expect = 0.51
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 190 ILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSHDI------NEAFRLGNRIAIM 243
+ L+DE +SLD + L +L L L +++++ HD + +G +
Sbjct: 1723 LFLLDEIATSLDNQQKSALLVQLRTLV-SLGHSVIYIDHDPALLKQADYLIEMG-PGSGK 1780
Query: 244 EGGRIIQCGTPQEI 257
GG+I+ G P++I
Sbjct: 1781 TGGKILFSGPPKDI 1794
Score = 28.6 bits (64), Expect = 2.3
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 50 LEVKKGEILVLMGLSGAGKSTL 71
+E EI++L G+SG+GKS+L
Sbjct: 21 IEFCPREIVLLTGVSGSGKSSL 42
>gnl|CDD|129002 smart00763, AAA_PrkA, PrkA AAA domain. This is a family of PrkA
bacterial and archaeal serine kinases approximately 630
residues long. This is the N-terminal AAA domain.
Length = 361
Score = 30.7 bits (70), Expect = 0.58
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 13/71 (18%)
Query: 17 ETSNKIRKRSRYSIKKHDKVSEYGMVSAV---------IKANLEVKKGEILVLMGLSGAG 67
+ R RY HD +GM A+ LE +K +IL L+G G G
Sbjct: 35 DVVENNRGIKRYRFFDHDF---FGMEEAIERFVNYFKSAAQGLEERK-QILYLLGPVGGG 90
Query: 68 KSTLLRSINGL 78
KS+L+ +
Sbjct: 91 KSSLVECLKRG 101
>gnl|CDD|178968 PRK00300, gmk, guanylate kinase; Provisional.
Length = 205
Score = 30.4 bits (70), Expect = 0.75
Identities = 12/21 (57%), Positives = 18/21 (85%)
Query: 53 KKGEILVLMGLSGAGKSTLLR 73
++G ++VL G SGAGKSTL++
Sbjct: 3 RRGLLIVLSGPSGAGKSTLVK 23
>gnl|CDD|181788 PRK09344, PRK09344, phosphoenolpyruvate carboxykinase; Provisional.
Length = 526
Score = 29.8 bits (68), Expect = 0.95
Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 48 ANLEVKKGEILVLMGLSGAGKSTL 71
AN+ ++G++ + GLSG GK+TL
Sbjct: 219 ANVG-EEGDVALFFGLSGTGKTTL 241
>gnl|CDD|183417 PRK12299, obgE, GTPase CgtA; Reviewed.
Length = 335
Score = 30.0 bits (69), Expect = 0.95
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 19/51 (37%)
Query: 60 LMGLSGAGKSTLLRSING------------LAP---VVRGEVLVDTDKGFV 95
L+GL AGKSTL+ +++ L P VVR VD K FV
Sbjct: 163 LVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVR----VDDYKSFV 209
>gnl|CDD|163179 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD.
This model describes the DndB protein encoded by an
operon associated with a sulfur-containing modification
to DNA. The operon is sporadically distributed in
bacteria, much like some restriction enzyme operons.
DndD is described as a putative ATPase. The small
number of examples known so far include species from
among the Firmicutes, Actinomycetes, Proteobacteria,
and Cyanobacteria.
Length = 650
Score = 30.0 bits (68), Expect = 0.98
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 49 NLEVKKGEILVLMG-LSGAGKSTLLRSI 75
+L + ++L+G L+GAGK+TLL +I
Sbjct: 21 DLSPSSPKPIILIGGLNGAGKTTLLDAI 48
>gnl|CDD|168091 PRK05541, PRK05541, adenylylsulfate kinase; Provisional.
Length = 176
Score = 30.0 bits (68), Expect = 1.1
Identities = 7/25 (28%), Positives = 17/25 (68%)
Query: 51 EVKKGEILVLMGLSGAGKSTLLRSI 75
G ++ + GL+G+GK+T+ +++
Sbjct: 3 MKPNGYVIWITGLAGSGKTTIAKAL 27
>gnl|CDD|179661 PRK03846, PRK03846, adenylylsulfate kinase; Provisional.
Length = 198
Score = 29.5 bits (67), Expect = 1.2
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 43 SAVIKANLEVKKGE---ILVLMGLSGAGKSTL 71
V KA E G +L GLSG+GKST+
Sbjct: 9 HPVTKAQREQLHGHKGVVLWFTGLSGSGKSTV 40
>gnl|CDD|116881 pfam08298, AAA_PrkA, PrkA AAA domain. This is a family of PrkA
bacterial and archaeal serine kinases approximately 630
residues long. This is the N-terminal AAA domain.
Length = 358
Score = 29.7 bits (67), Expect = 1.2
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 11/57 (19%)
Query: 29 SIKKHDKVSE-YGMVSAVIK---------ANLEVKKGEILVLMGLSGAGKSTLLRSI 75
IK++ ++ +GM + + LE +K +IL L+G G GKS+L +
Sbjct: 50 VIKRYPAFADFFGMEETIERIVNYFRHAAQGLEERK-QILYLLGPVGGGKSSLAERL 105
>gnl|CDD|182226 PRK10078, PRK10078, ribose 1,5-bisphosphokinase; Provisional.
Length = 186
Score = 29.3 bits (66), Expect = 1.4
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 55 GEILVLMGLSGAGKSTLLRSINGLAP 80
G+++ LMG SG+GK +LL ++
Sbjct: 2 GKLIWLMGPSGSGKDSLLAALRQREQ 27
>gnl|CDD|164820 PHA00520, PHA00520, packaging NTPase P4.
Length = 330
Score = 29.5 bits (66), Expect = 1.5
Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 6 VKFRDVDIVFGETSNKIRKRSRYSIKKHDKVSEYGMVSAVIKANLEVKKGE--ILVLMGL 63
+ F D+ E+ K+ R + S + A + + E + V++G
Sbjct: 74 IGFHKGDVAVVESQVKVV-RPGHRGWDVIITSVLTVACAPVVHRWIGHRIESGVEVVVGG 132
Query: 64 SGAGKSTLLRSINGLAPVVRGEVLVDT 90
+G+GK+ LL N LAP V G
Sbjct: 133 TGSGKTPLL---NALAPDVGGGDKYAV 156
>gnl|CDD|179157 PRK00889, PRK00889, adenylylsulfate kinase; Provisional.
Length = 175
Score = 29.2 bits (66), Expect = 1.6
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 52 VKKGEILVLMGLSGAGKSTL 71
++G + GLSGAGK+T+
Sbjct: 1 KQRGVTVWFTGLSGAGKTTI 20
>gnl|CDD|177823 PLN02165, PLN02165, adenylate isopentenyltransferase.
Length = 334
Score = 29.0 bits (65), Expect = 1.7
Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 4/40 (10%)
Query: 53 KKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDK 92
K +++V+MG +G+GKS L S++ LA E+ +++DK
Sbjct: 41 CKDKVVVIMGATGSGKSRL--SVD-LATRFPSEI-INSDK 76
>gnl|CDD|178984 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 29.3 bits (67), Expect = 1.8
Identities = 10/23 (43%), Positives = 19/23 (82%)
Query: 49 NLEVKKGEILVLMGLSGAGKSTL 71
+L++ + +++V GLSG+GKS+L
Sbjct: 20 DLDIPRDKLVVFTGLSGSGKSSL 42
Score = 28.5 bits (65), Expect = 2.9
Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 30/122 (24%)
Query: 170 LSGGMKQRVGFARAF---ATGAPILLMDEPFSSL---DPLIRMRLQDELLALQRKLKK-- 221
LSGG QRV A+ +TG + ++DEP + L D IR +L L L R + K
Sbjct: 831 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFED--IR-KL---LEVLHRLVDKGN 884
Query: 222 TIVFVSHD---INEAFRL-------GNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFIQ 271
T+V + H+ I A + G+ GG I+ GTP+E+ A+ Y +++
Sbjct: 885 TVVVIEHNLDVIKTADWIIDLGPEGGDG-----GGEIVATGTPEEVAKVEAS-YTGRYLK 938
Query: 272 KL 273
+
Sbjct: 939 PV 940
Score = 27.0 bits (61), Expect = 6.8
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 206 MRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRI------AIMEGGRIIQCGTPQEIIL 259
RL + L L R L T++ V HD + R + I A + GG ++ GTP+EI+
Sbjct: 528 DRLIETLKHL-RDLGNTLIVVEHD-EDTIRAADYIVDIGPGAGVHGGEVVASGTPEEIMK 585
Query: 260 HP 261
+P
Sbjct: 586 NP 587
>gnl|CDD|151168 pfam10662, PduV-EutP, Ethanolamine utilisation - propanediol
utilisation. Members of this family function in
ethanolamine and propanediol degradation pathways,
however the exact roles of these proteins is poorly
understood.
Length = 143
Score = 29.1 bits (66), Expect = 1.8
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 58 LVLMGLSGAGKSTLLRSINGL 78
++L+G SG GK+TL +++NG
Sbjct: 4 IMLIGRSGCGKTTLTQALNGE 24
>gnl|CDD|161774 TIGR00224, pckA, phosphoenolpyruvate carboxykinase (ATP). Involved
in the gluconeogenesis pathway. It converts oxaloacetic
acid to phosphoenolpyruvate using ATP. Enzyme is a
monomer. The reaction is also catalysed by
phosphoenolpyruvate carboxykinase (GTP) (EC 4.1.1.32)
using GTP instead of ATP, described in
PROSITE:PDOC00421.
Length = 532
Score = 29.1 bits (65), Expect = 1.9
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 53 KKGEILVLMGLSGAGKSTL 71
+KG++ + GLSG GK+TL
Sbjct: 231 EKGDVALFFGLSGTGKTTL 249
>gnl|CDD|162989 TIGR02729, Obg_CgtA, Obg family GTPase CgtA. This model describes
a univeral, mostly one-gene-per-genome GTP-binding
protein that associates with ribosomal subunits and
appears to play a role in ribosomal RNA maturation. This
GTPase, related to the nucleolar protein Obg, is
designated CgtA in bacteria. Mutations in this gene are
pleiotropic, but it appears that effects on cellular
functions such as chromosome partition may be secondary
to the effect on ribosome structure. Recent work done in
Vibrio cholerae shows an essential role in the stringent
response, in which RelA-dependent ability to synthesize
the alarmone ppGpp is required for deletion of this
GTPase to be lethal.
Length = 329
Score = 28.9 bits (66), Expect = 2.0
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 60 LMGLSGAGKSTLLRSI 75
L+GL AGKSTL+ ++
Sbjct: 162 LVGLPNAGKSTLISAV 177
>gnl|CDD|181957 PRK09563, rbgA, GTPase YlqF; Reviewed.
Length = 287
Score = 28.6 bits (65), Expect = 2.2
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 14/70 (20%)
Query: 11 VDIVFGETSNKIRKRSRYSIK-KHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKS 69
++ G+ KI K ++ +K K+++ GM I+A +++G+ GKS
Sbjct: 86 INAKKGQGVKKILKAAKKLLKEKNERRKAKGMRPRAIRA----------MIIGIPNVGKS 135
Query: 70 TLLRSINGLA 79
TL IN LA
Sbjct: 136 TL---INRLA 142
>gnl|CDD|183416 PRK12298, obgE, GTPase CgtA; Reviewed.
Length = 390
Score = 28.7 bits (65), Expect = 2.4
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 11/47 (23%)
Query: 60 LMGLSGAGKSTLLRSINGLAPVVR-----------GEVLVDTDKGFV 95
L+GL AGKST +R+++ P V G V VD ++ FV
Sbjct: 164 LLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFV 210
>gnl|CDD|163225 TIGR03348, VI_IcmF, type VI secretion protein IcmF. Members of
this protein family are IcmF homologs and tend to be
associated with type VI secretion systems.
Length = 1169
Score = 28.5 bits (64), Expect = 2.5
Identities = 7/15 (46%), Positives = 13/15 (86%)
Query: 59 VLMGLSGAGKSTLLR 73
+++G G+GK+TLL+
Sbjct: 115 LVIGPPGSGKTTLLQ 129
>gnl|CDD|129690 TIGR00602, rad24, checkpoint protein rad24. This family is based
on the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University).
Length = 637
Score = 28.4 bits (63), Expect = 2.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 50 LEVKKGEILVLMGLSGAGKSTLLR 73
LE IL++ G SG GKST ++
Sbjct: 105 LENAPKRILLITGPSGCGKSTTIK 128
>gnl|CDD|132614 TIGR03575, selen_PSTK_euk, L-seryl-tRNA(Sec) kinase, eukaryotic.
Members of this protein are L-seryl-tRNA(Sec) kinase.
This enzyme is part of a two-step pathway in Eukaryota
and Archaea for performing selenocysteine biosynthesis
by changing serine misacylated on selenocysteine-tRNA
to selenocysteine. This enzyme performs the first step,
phosphorylation of the OH group of the serine side
chain. This family represents eukaryotic proteins with
this activity.
Length = 340
Score = 28.3 bits (63), Expect = 2.7
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 57 ILVLMGLSGAGKSTLLRSI 75
+ VL GL AGKSTL RS+
Sbjct: 1 LCVLCGLPAAGKSTLARSL 19
>gnl|CDD|185512 PTZ00202, PTZ00202, tuzin; Provisional.
Length = 550
Score = 28.6 bits (64), Expect = 2.8
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 10/37 (27%)
Query: 57 ILVLMGLSGAGKSTLLRSINGLAPVVRGE----VLVD 89
I+V G G GKS+L RS VR E V VD
Sbjct: 288 IVVFTGFRGCGKSSLCRS------AVRKEGMPAVFVD 318
>gnl|CDD|130724 TIGR01663, PNK-3'Pase, polynucleotide 5'-kinase 3'-phosphatase.
Note that the EC number for the kinase function is:
2.7.1.78.
Length = 526
Score = 28.5 bits (63), Expect = 2.8
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 56 EILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTD 91
E+++ +G GAGKS + P G V+ D
Sbjct: 370 EMVIAVGFPGAGKSHFCKKF--FQP--AGYKHVNAD 401
>gnl|CDD|148176 pfam06414, Zeta_toxin, Zeta toxin. This family consists of several
bacterial zeta toxin proteins. Zeta toxin is thought to
be part of a postregulational killing system in
bacteria. It relies on antitoxin/toxin systems that
secure stable inheritance of low and medium copy number
plasmids during cell division and kill cells that have
lost the plasmid.
Length = 191
Score = 28.4 bits (64), Expect = 3.0
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 57 ILVLM-GLSGAGKSTLLR-SINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMHTVS 114
+ VL+ G GAGK+ L R + L V +D D+ + Y D + L+K S
Sbjct: 13 VAVLLGGQPGAGKTELARALLEELGG--GNVVRIDPDE--LRTYHPDYDELQKADPKDAS 68
Query: 115 MVFQQFA 121
+ Q A
Sbjct: 69 ELTQPDA 75
>gnl|CDD|132307 TIGR03263, guanyl_kin, guanylate kinase. Members of this family
are the enzyme guanylate kinase, also called GMP
kinase. This enzyme transfers a phosphate from ATP to
GMP, yielding ADP and GDP.
Length = 180
Score = 28.2 bits (64), Expect = 3.0
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 55 GEILVLMGLSGAGKSTLLR 73
G ++V+ G SG GKSTL++
Sbjct: 1 GLLIVISGPSGVGKSTLVK 19
>gnl|CDD|180730 PRK06851, PRK06851, hypothetical protein; Provisional.
Length = 367
Score = 28.4 bits (64), Expect = 3.2
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 57 ILVLMGLSGAGKSTLLRSI 75
I +L G G GKSTL++ I
Sbjct: 32 IFILKGGPGTGKSTLMKKI 50
>gnl|CDD|131096 TIGR02041, CysI, sulfite reductase (NADPH) hemoprotein,
beta-component. In cyanobacteria and plant species,
sulfite reductase ferredoxin (EC 1.8.7.1) catalyzes the
reduction of sulfite to sulfide.
Length = 541
Score = 28.2 bits (63), Expect = 3.4
Identities = 9/37 (24%), Positives = 22/37 (59%)
Query: 299 KISRQMPLIDIIDMVADNLGKIGVVEDDRIVGIITAI 335
K +P I+ +D+ A++LG + + ++ +++G I
Sbjct: 199 KTGVVIPPINDVDVYANDLGFVAIADNGKLIGFNVLI 235
>gnl|CDD|178349 PLN02748, PLN02748, tRNA dimethylallyltransferase.
Length = 468
Score = 27.9 bits (62), Expect = 3.6
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 53 KKGEILVLMGLSGAGKSTL 71
K +++V+MG +G+GKS L
Sbjct: 20 GKAKVVVVMGPTGSGKSKL 38
>gnl|CDD|180124 PRK05537, PRK05537, bifunctional sulfate adenylyltransferase
subunit 1/adenylylsulfate kinase protein; Validated.
Length = 568
Score = 28.1 bits (63), Expect = 3.8
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 53 KKGEILVLMGLSGAGKSTLLRSINGLAPVVRGE--VLVDTD 91
K+G + GLSGAGKST+ +++ +RG L+D D
Sbjct: 390 KQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGD 430
>gnl|CDD|150482 pfam09818, ABC_ATPase, Predicted ATPase of the ABC class. Members
of this family include various bacterial predicted ABC
class ATPases.
Length = 447
Score = 27.9 bits (63), Expect = 3.9
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 171 SGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLA 214
SG Q A GA +LL+DE S+ + +IR L++
Sbjct: 323 SGSTSQAANIQEALEAGASLLLIDEDTSATNFMIRDERMQALVS 366
>gnl|CDD|182935 PRK11059, PRK11059, regulatory protein CsrD; Provisional.
Length = 640
Score = 27.9 bits (63), Expect = 4.0
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 10/47 (21%)
Query: 194 DEPFS---SLDPLIRMR----LQDELLALQRKLKKTIVFVSHDINEA 233
+E S S+D L+ L+D LL R +K ++F ++ EA
Sbjct: 483 EENLSINLSVDSLLSRAFQRWLRDTLLQCPRSQRKRLIF---ELAEA 526
>gnl|CDD|180975 PRK07429, PRK07429, phosphoribulokinase; Provisional.
Length = 327
Score = 28.1 bits (63), Expect = 4.1
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 57 ILVLMGLSGAGKSTLLRSI 75
+L + G SG GK+T LR +
Sbjct: 10 LLGVAGDSGCGKTTFLRGL 28
>gnl|CDD|178887 PRK00131, aroK, shikimate kinase; Reviewed.
Length = 175
Score = 27.8 bits (63), Expect = 4.1
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 53 KKGEILVLMGLSGAGKST 70
KG +VL+G GAGKST
Sbjct: 2 LKGPNIVLIGFMGAGKST 19
>gnl|CDD|162028 TIGR00763, lon, ATP-dependent protease La. This protein is induced
by heat shock and other stresses in E. coli, B.
subtilis, and other species. The yeast member,
designated PIM1, is located in the mitochondrial matrix,
required for mitochondrial function, and also induced by
heat shock.
Length = 775
Score = 28.0 bits (63), Expect = 4.1
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 21 KIRKRSRYSIKK-HDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSI 75
+I Y +KK +++ EY V + KG IL L+G G GK++L +SI
Sbjct: 316 EILDEDHYGLKKVKERILEYLAVQKLRGK----MKGPILCLVGPPGVGKTSLGKSI 367
>gnl|CDD|129547 TIGR00455, apsK, adenylylsulfate kinase (apsK). Important
residue (active site in E.coli) is residue 100 of the
seed alignment.
Length = 184
Score = 27.8 bits (62), Expect = 4.4
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 54 KGEILVLMGLSGAGKSTL 71
+G ++ L GLSG+GKST+
Sbjct: 17 RGVVIWLTGLSGSGKSTI 34
>gnl|CDD|129576 TIGR00485, EF-Tu, translation elongation factor TU. This alignment
models orthologs of translation elongation factor EF-Tu
in bacteria, mitochondria, and chloroplasts, one of
several GTP-binding translation factors found by the
more general pfam model GTP_EFTU. The eukaryotic
conterpart, eukaryotic translation elongation factor 1
(eEF-1 alpha), is excluded from this model. EF-Tu is one
of the most abundant proteins in bacteria, as well as
one of the most highly conserved, and in a number of
species the gene is duplicated with identical function.
When bound to GTP, EF-Tu can form a complex with any
(correctly) aminoacylated tRNA except those for
initiation and for selenocysteine, in which case EF-Tu
is replaced by other factors. Transfer RNA is carried to
the ribosome in these complexes for protein translation.
Length = 394
Score = 27.8 bits (62), Expect = 4.4
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 233 AFRLGNRIAIMEGGRIIQCGTPQEII 258
A G R AI EGGR + G +II
Sbjct: 368 ALEQGMRFAIREGGRTVGAGVVSKII 393
>gnl|CDD|181256 PRK08154, PRK08154, anaerobic benzoate catabolism transcriptional
regulator; Reviewed.
Length = 309
Score = 27.6 bits (62), Expect = 4.5
Identities = 10/12 (83%), Positives = 11/12 (91%)
Query: 60 LMGLSGAGKSTL 71
L+GL GAGKSTL
Sbjct: 138 LIGLRGAGKSTL 149
>gnl|CDD|163008 TIGR02768, TraA_Ti, Ti-type conjugative transfer relaxase TraA.
This protein contains domains distinctive of a single
strand exonuclease (N-terminus, MobA/MobL, pfam03389) as
well as a helicase domain (central region, homologous to
the corresponding region of the F-type relaxase TraI,
TIGR02760). This protein likely fills the same role as
TraI(F), nicking (at the oriT site) and unwinding the
coiled plasmid prior to conjugative transfer.
Length = 744
Score = 27.8 bits (62), Expect = 4.7
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 53 KKGEILVLMGLSGAGKSTLLRSIN 76
G+I V++G +G GKST+L++
Sbjct: 366 GSGDIAVVVGRAGTGKSTMLKAAR 389
>gnl|CDD|179227 PRK01117, PRK01117, adenylosuccinate synthetase; Provisional.
Length = 430
Score = 27.7 bits (63), Expect = 5.1
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 210 DELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGG 246
DE L +LK + S +N+A + G R+ + EG
Sbjct: 188 DEYLEYAERLKPYVTDTSLLLNDALKAGKRV-LFEGA 223
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 27.2 bits (60), Expect = 6.3
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 167 INMLSGGMKQRVGFARAFATG------APILLMDEPFSSLDPLIRMRLQD 210
I+ LSGG K V FA A +L+MDEP + LD R L+D
Sbjct: 799 IDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKD 848
>gnl|CDD|181545 PRK08742, PRK08742, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 472
Score = 27.2 bits (60), Expect = 6.5
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 274 NPITALVAADVMRVCSIDDESNIVHKISRQMPLIDIIDMVADNLGKIGVVEDDRIVGIIT 333
NP+ A + + + DD I+R P + +A +G+ V D R G++
Sbjct: 346 NPLACAAALATLDIFADDD------VIARNQPTAARMTQLAAQIGEHPHVADVRQAGMVV 399
Query: 334 AIDIVRG 340
A ++ RG
Sbjct: 400 AFELTRG 406
>gnl|CDD|162162 TIGR01026, fliI_yscN, ATPase FliI/YscN family. This family of
ATPases demonstrates extensive homology with ATP
synthase F1, beta subunit. It is a mixture of members
with two different protein functions. The first group is
exemplified by Salmonella typhimurium FliI protein. It
is needed for flagellar assembly, its ATPase activity is
required for flagellation, and it may be involved in a
specialized protein export pathway that proceeds without
signal peptide cleavage. The second group of proteins
function in the export of virulence proteins;
exemplified by Yersinia sp. YscN protein an ATPase
involved in the type III secretory pathway for the
antihost Yops proteins.
Length = 440
Score = 27.3 bits (61), Expect = 6.7
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 45 VIKANLEVKKGEILVLMGLSGAGKSTLLRSI--NGLAPVV 82
I L V KG+ + + SG GKSTLL I N A V
Sbjct: 153 SIDGLLTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVN 192
>gnl|CDD|161778 TIGR00231, small_GTP, small GTP-binding protein domain. This
model recognizes a large number of small GTP-binding
proteins and related domains in larger proteins. Note
that the alpha chains of heterotrimeric G proteins are
larger proteins in which the NKXD motif is separated
from the GxxxxGK[ST] motif (P-loop) by a long insert
and are not easily detected by this model.
Length = 161
Score = 27.3 bits (61), Expect = 6.8
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 58 LVLMGLSGAGKSTLLRSI 75
+V++G GKSTLL +
Sbjct: 4 IVIVGDPNVGKSTLLNRL 21
>gnl|CDD|181006 PRK07505, PRK07505, hypothetical protein; Provisional.
Length = 402
Score = 27.3 bits (61), Expect = 6.9
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 12/70 (17%)
Query: 204 IRMRLQDELLALQRKLKKTI-VFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEII---- 258
+ L +EL LQ+KL+ I +F S E G+ + I R+I G I
Sbjct: 296 AEIHLSEELDQLQQKLQNNIALFDSLIPTEQS--GSFLPI----RLIYIGDEDTAIKAAK 349
Query: 259 -LHPANCYVS 267
L Y S
Sbjct: 350 QLLDRGFYTS 359
>gnl|CDD|129024 smart00788, Adenylsucc_synt, Adenylosuccinate synthetase.
Adenylosuccinate synthetase plays an important role in
purine biosynthesis, by catalyzing the GTP-dependent
conversion of IMP and aspartic acid to AMP.
Adenylosuccinate synthetase has been characterized from
various sources ranging from Escherichia coli (gene
purA) to vertebrate tissues. In vertebrates, two
isozymes are present - one involved in purine
biosynthesis and the other in the purine nucleotide
cycle. The crystal structure of adenylosuccinate
synthetase from E. coli reveals that the dominant
structural element of each monomer of the homodimer is a
central beta-sheet of 10 strands. The first nine strands
of the sheet are mutually parallel with right-handed
crossover connections between the strands. The 10th
strand is antiparallel with respect to the first nine
strands. In addition, the enzyme has two antiparallel
beta-sheets, comprised of two strands and three strands
each, 11 alpha-helices and two short 3/10-helices.
Further, it has been suggested that the similarities in
the GTP-binding domains of the synthetase and the p21ras
protein are an example of convergent evolution of two
distinct families of GTP-binding proteins
PUBMED:8244965. Structures of adenylosuccinate
synthetase from Triticum aestivum and Arabidopsis
thaliana when compared with the known structures from E.
coli reveals that the overall fold is very similar to
that of the E. coli protein PUBMED:10669609.
Length = 421
Score = 27.1 bits (61), Expect = 7.0
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 200 LDPLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEG 245
+P+ + +ELL +LK +V VS +N+A + G ++ + EG
Sbjct: 176 AEPVDVEEILEELLEYAERLKPYVVDVSELLNDALKAGKKV-LFEG 220
>gnl|CDD|161735 TIGR00157, TIGR00157, ribosome small subunit-dependent GTPase A.
The Aquifex aeolicus ortholog is split into consecutive
open reading frames. Consequently, this model was build
in fragment mode (-f option).
Length = 245
Score = 27.0 bits (60), Expect = 7.4
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 51 EVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVL 87
E + I V G SG GKS+L+ +++ ++
Sbjct: 116 EALQNRISVFAGQSGVGKSSLINALDPSVKQQVNDIS 152
>gnl|CDD|178207 PLN02597, PLN02597, phosphoenolpyruvate carboxykinase [ATP].
Length = 555
Score = 27.1 bits (60), Expect = 7.5
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 53 KKGEILVLMGLSGAGKSTL 71
K G++ + GLSG GK+TL
Sbjct: 244 KDGDVALFFGLSGTGKTTL 262
>gnl|CDD|162220 TIGR01137, cysta_beta, cystathionine beta-synthase. Members of
this family closely resemble cysteine synthase but
contain an additional C-terminal CBS domain. The
function of any bacterial member included in this family
is proposed but not proven.
Length = 454
Score = 27.1 bits (60), Expect = 8.1
Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
Query: 299 KISRQMPLIDIIDMVADNLGKI-------GVVEDDRIVGIITAIDIVRGLS 342
+S++ I + ++D L K V E+ + +G++T ID++ L+
Sbjct: 405 VMSKKFIQIGEGEKLSD-LSKFLEKNSSAIVTEEGKPIGVVTKIDLLSFLA 454
>gnl|CDD|162806 TIGR02322, phosphon_PhnN, phosphonate metabolism
protein/1,5-bisphosphokinase (PRPP-forming) PhnN.
Members of this family resemble PhnN of phosphonate
utilization operons, where different such operons
confer the ability to use somewhat different profiles
of C-P bond-containing compounds (see PubMed:15231805),
including phosphites as well as phosphonates. PhnN in
E. coli shows considerable homology to guanylate
kinases (EC 2.7.4.8), and has actually been shown to
act as a ribose 1,5-bisphosphokinase (PRPP forming).
This suggests an analogous kinase reaction for
phosphonate metabolism, converting
5-phosphoalpha-1-(methylphosphono)ribose to
methylphosphono-PRPP.
Length = 179
Score = 26.9 bits (60), Expect = 8.4
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 55 GEILVLMGLSGAGKSTLL 72
G ++ ++G SGAGK TLL
Sbjct: 1 GRLIYVVGPSGAGKDTLL 18
>gnl|CDD|183183 PRK11537, PRK11537, putative GTP-binding protein YjiA;
Provisional.
Length = 318
Score = 27.0 bits (60), Expect = 8.7
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 59 VLMGLSGAGKSTLLRSI 75
+L G GAGK+TLLR I
Sbjct: 8 LLTGFLGAGKTTLLRHI 24
>gnl|CDD|129465 TIGR00368, TIGR00368, Mg chelatase-related protein. The N-terminal
end matches very strongly a pfam Mg_chelatase domain.
Length = 499
Score = 26.7 bits (59), Expect = 9.5
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 55 GEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDT 90
G L+L G G+GK+ L + G+ P + E ++T
Sbjct: 211 GHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIET 246
>gnl|CDD|131580 TIGR02528, EutP, ethanolamine utilization protein, EutP. This
protein is found within operons which code for
polyhedral organelles containing the enzyme
ethanolamine ammonia lyase. The function of this gene
is unknown, although the presence of an N-terminal
GxxGxGK motif implies a GTP-binding site.
Length = 142
Score = 26.6 bits (59), Expect = 9.6
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 58 LVLMGLSGAGKSTLLRSINGLA 79
++ +G G GK+TL +++ G
Sbjct: 3 IMFIGSVGCGKTTLTQALQGEE 24
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.324 0.140 0.402
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,757,663
Number of extensions: 385404
Number of successful extensions: 1943
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1598
Number of HSP's successfully gapped: 369
Length of query: 348
Length of database: 5,994,473
Length adjustment: 94
Effective length of query: 254
Effective length of database: 3,963,321
Effective search space: 1006683534
Effective search space used: 1006683534
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.3 bits)