RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780340|ref|YP_003064753.1| proline/glycine betaine ABC transporter, ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62] (348 letters) >gnl|CDD|132456 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. Length = 382 Score = 437 bits (1125), Expect = e-123 Identities = 176/386 (45%), Positives = 230/386 (59%), Gaps = 57/386 (14%) Query: 6 VKFRDVDIVFGETSNKIRKRSRYSIKKHDK-------VSEYGMVSAVIKANLEVKKGEIL 58 + F++VD+VFG + ++ D+ + E G+V V A+L++++GEI Sbjct: 1 IDFKNVDVVFG-------DQPAEALALLDQGKTREEILDETGLVVGVANASLDIEEGEIC 53 Query: 59 VLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMHTVSMVFQ 118 VLMGLSG+GKS+LLR++NGL PV RG VLV G ++ DA LR+LR H VSMVFQ Sbjct: 54 VLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQ 113 Query: 119 QFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKINMLSGGMKQRV 178 +FAL+PW TV NV GLE +P+ ER+ RV E LE+V L +WAD K LSGGM+QRV Sbjct: 114 KFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRV 173 Query: 179 GFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGN 238 G ARAFA A ILLMDEPFS+LDPLIR +LQDELL LQ KL KTI+FVSHD++EA ++GN Sbjct: 174 GLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGN 233 Query: 239 RIAIMEGGRIIQCGTPQEIILHPANCYVSEFIQKLNPITALVAADVMR------------ 286 RIAIMEGGRIIQ GTP+EI+L+PAN YV++F+ NP+ L A +MR Sbjct: 234 RIAIMEGGRIIQHGTPEEIVLNPANDYVADFVAHTNPLNVLTARSLMRPLTDLEHVDGGW 293 Query: 287 -----------------------------VCSIDDES--NIVHKISRQMPLIDIIDMVAD 315 + ES I+ + D++ Sbjct: 294 CVSDRRDTWLFTIDKQVRRRDAKLPVQAWAAEQEVESLEAAPTVINPDTLMRDVLAARHR 353 Query: 316 NLGKIGVVEDDRIVGIITAIDIVRGL 341 G I +VE+ RIVG+I +I L Sbjct: 354 TGGAILLVENGRIVGVIGDDNIYHAL 379 >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature. Length = 363 Score = 250 bits (640), Expect = 4e-67 Identities = 117/247 (47%), Positives = 157/247 (63%), Gaps = 4/247 (1%) Query: 40 GMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYA 99 G V A+L + KGEI V+MGLSG+GKST +R +N L G++ +D + N Sbjct: 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGE----NIMK 59 Query: 100 ADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNL 159 LR++R + MVFQQFAL P T+ +N LG E L P+ ERK + E L++V L Sbjct: 60 QSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGL 119 Query: 160 TKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKL 219 ++ + LSGGM+QRVG ARA A ILLMDE FS+LDPLIR +QDEL LQ L Sbjct: 120 EEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATL 179 Query: 220 KKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFIQKLNPITAL 279 +KTIVF++HD++EA R+G+RI IM+ G I+Q GTP EI+ +PAN YV EFI K++ Sbjct: 180 QKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVEEFIGKVDLSQVF 239 Query: 280 VAADVMR 286 A + + Sbjct: 240 DAERIAQ 246 >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional. Length = 400 Score = 223 bits (570), Expect = 4e-59 Identities = 122/273 (44%), Positives = 171/273 (62%), Gaps = 4/273 (1%) Query: 14 VFGETSNKIRKRSRYSIKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLR 73 +FGE + K + K + + G+ V A+L +++GEI V+MGLSG+GKST++R Sbjct: 13 IFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVR 72 Query: 74 SINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVE 133 +N L RG+VL+D G +DA LR++R ++MVFQ FAL+P TV N Sbjct: 73 LLNRLIEPTRGQVLID---GVDIAKISDAE-LREVRRKKIAMVFQSFALMPHMTVLDNTA 128 Query: 134 LGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLM 193 G+E I ER+ + + L V L +A + LSGGM+QRVG ARA A ILLM Sbjct: 129 FGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLM 188 Query: 194 DEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGT 253 DE FS+LDPLIR +QDEL+ LQ K ++TIVF+SHD++EA R+G+RIAIM+ G ++Q GT Sbjct: 189 DEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGT 248 Query: 254 PQEIILHPANCYVSEFIQKLNPITALVAADVMR 286 P EI+ +PAN YV F + ++ A D+ R Sbjct: 249 PDEILNNPANDYVRTFFRGVDISQVFSAKDIAR 281 >gnl|CDD|163196 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. Length = 353 Score = 197 bits (504), Expect = 2e-51 Identities = 96/252 (38%), Positives = 133/252 (52%), Gaps = 12/252 (4%) Query: 33 HDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD-TD 91 + +G +A+ +L VKKGE + L+G SG GK+TLLR I GL G + D Sbjct: 8 DNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRD 67 Query: 92 KGFVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVA 151 + P D +VFQ +AL P TVA N+ GL+ + E RVA Sbjct: 68 ITRLPPQKRD-----------YGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVA 116 Query: 152 EHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDE 211 E L++V L LSGG +QRV ARA AT +LL+DEP S+LD +R L+ E Sbjct: 117 ELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTE 176 Query: 212 LLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFIQ 271 + LQR+L T + V+HD EA + +RI +M G I Q GTPQEI HPA +V++F+ Sbjct: 177 IRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPFVADFVG 236 Query: 272 KLNPITALVAAD 283 ++N + Sbjct: 237 EVNWLPGTRGGG 248 >gnl|CDD|181868 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed. Length = 375 Score = 187 bits (476), Expect = 4e-48 Identities = 99/241 (41%), Positives = 132/241 (54%), Gaps = 12/241 (4%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108 +L + GE L L+G SG GK+T+LR I G G +++D D + Sbjct: 34 DLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLD---------GQDITHVPAE 84 Query: 109 RMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKIN 168 H V+ VFQ +AL P TV NV GL P E RV E L +V L ++A K + Sbjct: 85 NRH-VNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPH 143 Query: 169 MLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSH 228 LSGG +QRV ARA +LL+DE S+LD +R ++Q+EL ALQRKL T VFV+H Sbjct: 144 QLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTH 203 Query: 229 DINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFIQKLN--PITALVAADVMR 286 D EA + +RI +M GRI Q GTP+EI P N +V+ FI ++N T + D R Sbjct: 204 DQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKNLFVARFIGEINIFDATVIERLDEQR 263 Query: 287 V 287 V Sbjct: 264 V 264 >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). Length = 325 Score = 186 bits (475), Expect = 5e-48 Identities = 98/222 (44%), Positives = 131/222 (59%), Gaps = 12/222 (5%) Query: 60 LMGLSGAGKSTLLRSINGLAPVVRGEVLVD-TDKGFVNPYAADANVLRKLRMHTVSMVFQ 118 L+G SG GK+TLLR + G G +++D D V P+ LR ++MVFQ Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPH---------LR--HINMVFQ 49 Query: 119 QFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKINMLSGGMKQRV 178 +AL P TV NV GL+ +P E K RV E L +V L ++AD K + LSGG +QRV Sbjct: 50 SYALFPHMTVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRV 109 Query: 179 GFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGN 238 ARA ILL+DEP S+LD +R ++Q EL +Q +L T VFV+HD EA + + Sbjct: 110 ALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSD 169 Query: 239 RIAIMEGGRIIQCGTPQEIILHPANCYVSEFIQKLNPITALV 280 RIAIM G+I Q GTP+EI PAN +V+ FI ++N A V Sbjct: 170 RIAIMRKGKIAQIGTPEEIYEEPANLFVARFIGEINVFEATV 211 >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein. Length = 237 Score = 185 bits (471), Expect = 2e-47 Identities = 95/237 (40%), Positives = 128/237 (54%), Gaps = 10/237 (4%) Query: 38 EYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNP 97 +G A+ NLEV G ++ L+G SG+GKSTLLR I GL D G + Sbjct: 9 RFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLE---------QPDSGRIRL 59 Query: 98 YAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIV 157 DA + R + VFQ +AL TV N+ GLE P + K+RV E LE+V Sbjct: 60 NGQDATRV-HARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELV 118 Query: 158 NLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQR 217 L D N LSGG +QRV ARA A +LL+DEPF +LD +R L+ L L Sbjct: 119 QLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHD 178 Query: 218 KLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFIQKLN 274 ++ T VFV+HD EA + +RI +M G+I Q G+P E+ HPAN +V F+ ++N Sbjct: 179 EVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPANPFVMSFLGEVN 235 >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional. Length = 377 Score = 173 bits (439), Expect = 8e-44 Identities = 92/232 (39%), Positives = 133/232 (57%), Gaps = 12/232 (5%) Query: 44 AVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD-TDKGFVNPYAADA 102 AV +L + KGEI L+G SG GKSTLLR + G G++++D D V PY Sbjct: 34 AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPY---- 89 Query: 103 NVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKW 162 ++M+FQ +AL P TV +N+ GL+ +P E SRV E L +V++ ++ Sbjct: 90 -------QRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEF 142 Query: 163 ADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKT 222 A K + LSGG +QRV AR+ A +LL+DEP +LD +R R+Q E++ + ++ T Sbjct: 143 AKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVT 202 Query: 223 IVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFIQKLN 274 V V+HD EA + RIAIM G+ +Q G P+EI HP Y +EFI +N Sbjct: 203 CVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYSAEFIGSVN 254 >gnl|CDD|183001 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional. Length = 343 Score = 170 bits (433), Expect = 5e-43 Identities = 98/237 (41%), Positives = 132/237 (55%), Gaps = 19/237 (8%) Query: 42 VSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAAD 101 + A+ +L + GEI ++G SGAGKSTL+R IN L G VLVD + A Sbjct: 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDG----QDLTALS 73 Query: 102 ANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTK 161 LRK R + M+FQ F LL RTV NV L LE P E K+RV E LE+V L+ Sbjct: 74 EKELRKAR-RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSD 132 Query: 162 WADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDP------LIRMRLQDELLA- 214 AD LSGG KQRV ARA A+ +LL DE S+LDP L ELL Sbjct: 133 KADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSIL-------ELLKD 185 Query: 215 LQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFIQ 271 + R+L TIV ++H+++ R+ +R+A+++ GR+++ GT E+ HP + EFIQ Sbjct: 186 INRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHPKHPLTREFIQ 242 >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional. Length = 353 Score = 161 bits (409), Expect = 3e-40 Identities = 92/237 (38%), Positives = 125/237 (52%), Gaps = 28/237 (11%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEV-LVDTDKGFVNPYAADANVLRK 107 +L++ G+++ L+G SG+GK+TLLR I GL G + TD Sbjct: 22 SLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVS-------------- 67 Query: 108 LRMHT----VSMVFQQFALLPWRTVARNVELGLEFLDIPDVER------KSRVAEHLEIV 157 R+H V VFQ +AL TV N+ GL L P ER K++V + LE+V Sbjct: 68 -RLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVL--PRRERPNAAAIKAKVTQLLEMV 124 Query: 158 NLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQR 217 L AD LSGG KQRV ARA A ILL+DEPF +LD +R L+ L L Sbjct: 125 QLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHE 184 Query: 218 KLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFIQKLN 274 +LK T VFV+HD EA + +R+ +M G I Q GTP ++ PA +V EF+ ++N Sbjct: 185 ELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPATRFVLEFMGEVN 241 >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 Score = 159 bits (402), Expect = 1e-39 Identities = 87/244 (35%), Positives = 135/244 (55%), Gaps = 15/244 (6%) Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGL--APVVRGEVLV-DTDKGFV 95 YG + + +LE++ GE+L L+G SG GK+TLLR+I G A + G + + D D Sbjct: 15 YGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHA 74 Query: 96 NPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLE 155 P+ ++++FQ +AL P V NV GL +P + RVA+ L+ Sbjct: 75 PPHK-----------RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALK 123 Query: 156 IVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLAL 215 +V L A LSGGM+QR+ ARA A +LL+DEP S+LD IR +++E+ AL Sbjct: 124 LVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAAL 183 Query: 216 QRKLKK-TIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFIQKLN 274 +L + TI+ V+HD ++A L ++ IM+ GR+ G PQ + PA+ + +EF+ N Sbjct: 184 HEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAPADGFAAEFLGAAN 243 Query: 275 PITA 278 + A Sbjct: 244 ILPA 247 >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional. Length = 351 Score = 157 bits (399), Expect = 4e-39 Identities = 84/243 (34%), Positives = 141/243 (58%), Gaps = 18/243 (7%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD----TDKGFVNPYAADANV 104 NL +K+G ++ L+G SG GK+T+LR + GL G++ +D T Sbjct: 26 NLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTH------------- 72 Query: 105 LRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWAD 164 R ++ + MVFQ +AL P ++ NV GL+ L +P ERK RV E LE+V+L + D Sbjct: 73 -RSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFED 131 Query: 165 CKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIV 224 ++ +SGG +QRV ARA +LL DEP S+LD +R +++++ LQ++ T + Sbjct: 132 RYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSL 191 Query: 225 FVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFIQKLNPITALVAADV 284 +V+HD +EAF + + + +M G+I+Q G+PQE+ PA+ +++ F+ N A ++ D Sbjct: 192 YVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRFMASFMGDANIFPATLSGDY 251 Query: 285 MRV 287 + + Sbjct: 252 VDI 254 >gnl|CDD|183258 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional. Length = 356 Score = 155 bits (394), Expect = 1e-38 Identities = 95/232 (40%), Positives = 129/232 (55%), Gaps = 21/232 (9%) Query: 45 VIKA-NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVN---PYAA 100 VIK +L+V GE +VL+G SG GKSTLLR + GL + GE+ + VN P A Sbjct: 19 VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRV--VNELEP--A 74 Query: 101 DANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLT 160 D ++ +MVFQ +AL P +V N+ GL+ +P E + RVAE I+ L Sbjct: 75 DRDI---------AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELE 125 Query: 161 KWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIR--MRLQDELLALQRK 218 D K LSGG +QRV RA + L DEP S+LD +R MRL E+ L R+ Sbjct: 126 PLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRL--EIQRLHRR 183 Query: 219 LKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFI 270 LK T ++V+HD EA L +R+ +M GG Q GTP E+ PA+ +V+ FI Sbjct: 184 LKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPASTFVASFI 235 >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional. Length = 369 Score = 154 bits (390), Expect = 4e-38 Identities = 84/232 (36%), Positives = 130/232 (56%), Gaps = 10/232 (4%) Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPY 98 YG V NL++ +GE +V +G SG GKSTLLR I GL + G++ + + +N Sbjct: 13 YGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKR--MN-- 68 Query: 99 AADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVN 158 +V R V MVFQ +AL P +VA N+ GL+ E RV + E++ Sbjct: 69 ----DVPPAER--GVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQ 122 Query: 159 LTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRK 218 L D K LSGG +QRV R + L+DEP S+LD +R++++ E+ L ++ Sbjct: 123 LAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR 182 Query: 219 LKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFI 270 L +T+++V+HD EA L ++I +++ GR+ Q G P E+ +PAN +V+ FI Sbjct: 183 LGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPANRFVAGFI 234 >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. Length = 230 Score = 153 bits (388), Expect = 6e-38 Identities = 82/211 (38%), Positives = 126/211 (59%), Gaps = 15/211 (7%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108 NL +++GE + L+G SG GKSTLL I+GLA G V+++ + + D Sbjct: 5 NLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQ--ITEPGPD------- 55 Query: 109 RMHTVSMVFQQFALLPWRTVARNVELGLEFL--DIPDVERKSRVAEHLEIVNLTKWADCK 166 RM +VFQ ++LLPW TV N+ L ++ + D+ ER++ V EH+ +V LT+ AD + Sbjct: 56 RM----VVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKR 111 Query: 167 INMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFV 226 LSGGMKQRV ARA + +LL+DEPF +LD L R LQ+EL+ + + + T++ V Sbjct: 112 PGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMV 171 Query: 227 SHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257 +HD++EA L +R+ ++ G G E+ Sbjct: 172 THDVDEALLLSDRVVMLTNGPAANIGQILEV 202 >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 Score = 143 bits (361), Expect = 8e-35 Identities = 88/244 (36%), Positives = 129/244 (52%), Gaps = 7/244 (2%) Query: 30 IKKHDKVSEYG--MVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVL 87 + KV G + A+ +L V G+I ++G SGAGKSTL+R +N L G V+ Sbjct: 4 LSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVI 63 Query: 88 VDTDKGFVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERK 147 VD + ++ L K R + M+FQ F LL RTV NV L LE + P E K Sbjct: 64 VD-GQDLTTLSNSE---LTKARRQ-IGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIK 118 Query: 148 SRVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMR 207 +V E L +V L D + LSGG KQRV ARA A+ +LL DE S+LDP Sbjct: 119 RKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQS 178 Query: 208 LQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVS 267 + + L + R+L TI+ ++H+++ R+ + +A++ G +I+ GT EI HP Sbjct: 179 ILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLAQ 238 Query: 268 EFIQ 271 +FI+ Sbjct: 239 KFIR 242 >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 Score = 142 bits (359), Expect = 2e-34 Identities = 86/257 (33%), Positives = 132/257 (51%), Gaps = 20/257 (7%) Query: 30 IKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD 89 ++ D +G+++ + N V GE + L+G SG+GKST+LR + L P+ G++ V+ Sbjct: 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVE 60 Query: 90 TD--------KGFVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELG-LEFLD 140 + G + P AD LR++R + MVFQ F L P +TV NV + L Sbjct: 61 GEQLYHMPGRNGPLVP--ADEKHLRQMRNK-IGMVFQSFNLFPHKTVLDNVTEAPVLVLG 117 Query: 141 IPDVERKSRVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSL 200 + E + R E L++V L AD LSGG +QRV ARA A ++L DE S+L Sbjct: 118 MARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSAL 177 Query: 201 DPLIRMRLQDELLALQRKL----KKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQE 256 DP L E+L + R+L T++ V+H++ A +R+ + GRI++ G P E Sbjct: 178 DP----ELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDE 233 Query: 257 IILHPANCYVSEFIQKL 273 I P EF+ K+ Sbjct: 234 IFRQPKEERTREFLSKV 250 >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed. Length = 240 Score = 142 bits (359), Expect = 2e-34 Identities = 85/227 (37%), Positives = 128/227 (56%), Gaps = 14/227 (6%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108 +L + +GE++V++G SG+GKSTLLR IN L + G+++VD K VN D ++R+ Sbjct: 21 DLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLK--VNDPKVDERLIRQ- 77 Query: 109 RMHTVSMVFQQFALLPWRTVARNVELG-LEFLDIPDVERKSRVAEHLEIVNLTKWADCKI 167 MVFQQF L P T NV G L E + + E L V L + A Sbjct: 78 ---EAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYP 134 Query: 168 NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKK---TIV 224 + LSGG +QRV ARA A ++L DEP S+LDP L+ E+L + + L + T+V Sbjct: 135 SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDP----ELRHEVLKVMQDLAEEGMTMV 190 Query: 225 FVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFIQ 271 V+H+I A ++ +R+ ++ GRI + G PQ +I +P + + EF+Q Sbjct: 191 IVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNPPSQRLQEFLQ 237 >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional. Length = 255 Score = 141 bits (358), Expect = 2e-34 Identities = 76/216 (35%), Positives = 113/216 (52%), Gaps = 15/216 (6%) Query: 37 SEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVN 96 ++YG A+ NL ++ GE+LV++G SG GK+TLL I G P G + +D V Sbjct: 9 ADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKP--VE 66 Query: 97 PYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEI 156 A+ V VFQ LLPWR V NV GL+ + ++R + L+ Sbjct: 67 GPGAERGV-----------VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKK 115 Query: 157 VNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQ 216 V L I LSGG +QRVG ARA A +LL+DEPF +LD R ++Q LL L Sbjct: 116 VGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLW 175 Query: 217 RKLKKTIVFVSHDINEAFRLGNRIAIME--GGRIIQ 250 ++ K ++ ++HDI EA + + ++ GR+++ Sbjct: 176 QETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVE 211 >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. Length = 243 Score = 139 bits (353), Expect = 9e-34 Identities = 77/230 (33%), Positives = 110/230 (47%), Gaps = 18/230 (7%) Query: 39 YGMVSAVIKA-NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD-TDKGFVN 96 Y +K NL + GE + ++G SGAGKSTLLR IN L G +L++ TD Sbjct: 11 YPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDIT--- 67 Query: 97 PYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELG---------LEFLDIPDVERK 147 LRKLR M+FQ + L+ TV NV G + E K Sbjct: 68 --KLRGKKLRKLRRRI-GMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSE-EDK 123 Query: 148 SRVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMR 207 R LE V L A + + LSGG +QRV ARA A ++L DEP +SLDP + Sbjct: 124 ERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQ 183 Query: 208 LQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257 + D L + ++ T++ H ++ A + +RI ++ G I+ G P E+ Sbjct: 184 VMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233 >gnl|CDD|130045 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. Length = 247 Score = 132 bits (333), Expect = 2e-31 Identities = 82/248 (33%), Positives = 126/248 (50%), Gaps = 31/248 (12%) Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSIN---GLAPVVR--GEVLVDTDKG 93 YG A+ NL++ K ++ L+G SG GKSTLLRS+N L P VR G+VL D Sbjct: 11 YGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQD- 69 Query: 94 FVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEH 153 + D LR+ V MVFQ+ P ++ N+ G I D + + E Sbjct: 70 -IYDKKIDVVELRR----RVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEE 123 Query: 154 LEIVNLTK---WADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLI 204 L K W + K + LSGG +QR+ ARA A +LL+DEP S+LDP+ Sbjct: 124 S----LKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIA 179 Query: 205 RMRLQDELLALQRKLKK--TIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPA 262 ++++ L ++LKK TIV V+H++ +A R+ +R A G +++ G ++I +P Sbjct: 180 TGKIEE----LIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTNPK 235 Query: 263 NCYVSEFI 270 ++I Sbjct: 236 EKRTEDYI 243 >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional. Length = 250 Score = 130 bits (328), Expect = 6e-31 Identities = 85/233 (36%), Positives = 126/233 (54%), Gaps = 18/233 (7%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGL----APVVR-GEVLVDTDKGFVNPYAADAN 103 +LEVK GE++ ++G SG+GK+TLLR IN L A +R G++ +DT + + Sbjct: 23 DLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTAR----SLSQQKG 78 Query: 104 VLRKLRMHTVSMVFQQFALLPWRTVARNVELG-LEFLDIPDVERKSRVAEHLEIVNLTKW 162 ++R+LR H V VFQ F L P RTV N+ G + P E +R E L V L Sbjct: 79 LIRQLRQH-VGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGK 137 Query: 163 ADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKL--- 219 LSGG +QRV ARA A ++L DEP S+LDP L E+L R+L Sbjct: 138 ETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDP----ELVGEVLNTIRQLAQE 193 Query: 220 KKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFIQK 272 K+T+V V+H+++ A + +R M+ GRI++ G + + P +F++K Sbjct: 194 KRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADPQQPRTRQFLEK 246 >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. Length = 213 Score = 129 bits (326), Expect = 1e-30 Identities = 73/209 (34%), Positives = 113/209 (54%), Gaps = 20/209 (9%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108 +L V GEI+ +MG SGAGKSTLL I G G + V+ D + Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVN-----------DQSHTGLA 66 Query: 109 -RMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKI 167 VSM+FQ+ L TV +N+ LGL + E++ +V + + V + + D Sbjct: 67 PYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP 126 Query: 168 NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKL----KKTI 223 LSGG +QRV AR PILL+DEPFS+LDPL+R +E+LAL ++L ++T+ Sbjct: 127 EQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLR----EEMLALVKQLCSERQRTL 182 Query: 224 VFVSHDINEAFRLGNRIAIMEGGRIIQCG 252 + V+H +++A + ++IA++ G+I Sbjct: 183 LMVTHHLSDARAIASQIAVVSQGKIKVVS 211 >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional. Length = 242 Score = 126 bits (319), Expect = 8e-30 Identities = 77/216 (35%), Positives = 111/216 (51%), Gaps = 4/216 (1%) Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPY 98 YG A+ L+ +GE LVL+G SGAGKS+LLR +N L + R L F Sbjct: 12 YGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLN-LLEMPRSGTLNIAGNHFDFSK 70 Query: 99 AADANVLRKLRMHTVSMVFQQFALLPWRTVARN-VELGLEFLDIPDVERKSRVAEHLEIV 157 +R+LR V MVFQQ+ L P TV +N +E L + + +R + LE + Sbjct: 71 TPSDKAIRELR-RNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERL 129 Query: 158 NLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQR 217 L +AD LSGG +QRV ARA +LL DEP ++LDP I ++ + L Sbjct: 130 RLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELA- 188 Query: 218 KLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGT 253 + T V V+H++ A + +R+ ME G I++ G Sbjct: 189 ETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGD 224 >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. Length = 214 Score = 125 bits (317), Expect = 1e-29 Identities = 80/203 (39%), Positives = 109/203 (53%), Gaps = 14/203 (6%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGF-VNPYAADANVLRK 107 +L ++KGE L L G SGAGK+TLL+ + G RG+V + G VN L Sbjct: 22 SLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIA---GEDVNRL--RGRQLPL 76 Query: 108 LRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKI 167 LR + +VFQ F LLP RTV NV L LE + E + RV L V L AD Sbjct: 77 LRRR-IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP 135 Query: 168 NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKK---TIV 224 LSGG +QRV ARA P+LL DEP +LDP L + +L L ++L K T++ Sbjct: 136 EQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDP----DLSERILDLLKRLNKRGTTVI 191 Query: 225 FVSHDINEAFRLGNRIAIMEGGR 247 +HD++ R+ +R+ I++ GR Sbjct: 192 VATHDLSLVDRVAHRVIILDDGR 214 >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. Length = 354 Score = 125 bits (315), Expect = 2e-29 Identities = 65/218 (29%), Positives = 102/218 (46%), Gaps = 18/218 (8%) Query: 46 IKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAP------VVRGEVLVDTDKGFVNPYA 99 + A+ + + + G SG+GK+TL+R I GL V+ G L D+ KG P Sbjct: 14 LDADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLP-- 71 Query: 100 ADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNL 159 K R + VFQ+ L P +V N+ G++ ER+ +E++ + Sbjct: 72 -----PEKRR---IGYVFQEARLFPHLSVRGNLRYGMKRARPS--ERRISFERVIELLGI 121 Query: 160 TKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKL 219 LSGG KQRV RA + +LLMDEP ++LD + + L L + Sbjct: 122 GHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEF 181 Query: 220 KKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257 I++VSH + E RL +R+ ++E GR+ G E+ Sbjct: 182 GIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEV 219 >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. Length = 302 Score = 123 bits (311), Expect = 5e-29 Identities = 72/222 (32%), Positives = 116/222 (52%), Gaps = 16/222 (7%) Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPY 98 YG AV N +V++GE+ +G +GAGK+T +R + L G V Y Sbjct: 3 YGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSG-------TARVAGY 55 Query: 99 AADANVLR---KLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLE 155 +V+R K+R ++ +V Q ++ T N+E+ +P E + R E LE Sbjct: 56 ----DVVREPRKVR-RSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLE 110 Query: 156 IVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLAL 215 + L + AD + SGGM++R+ A + +L +DEP + LDP R + D + AL Sbjct: 111 LFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRAL 170 Query: 216 QRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257 ++ TI+ +H + EA +L +RIAI++ GRII GTP+E+ Sbjct: 171 -KEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEEL 211 >gnl|CDD|163352 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. Length = 206 Score = 121 bits (307), Expect = 2e-28 Identities = 70/186 (37%), Positives = 101/186 (54%), Gaps = 11/186 (5%) Query: 47 KANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLR 106 NL ++KG++ ++G SG+GKSTLL I L G+V ++ K + A+ R Sbjct: 16 DLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLN-GKETPPLNSKKASKFR 74 Query: 107 KLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCK 166 + + +FQ FAL+ TV N++LGL++ + E++ + E LE V L K Sbjct: 75 R---EKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQK 131 Query: 167 INMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLK---KTI 223 I LSGG +QRV ARA P++L DEP SLDP R DE+L L +L KTI Sbjct: 132 IYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNR----DEVLDLLLELNDEGKTI 187 Query: 224 VFVSHD 229 + V+HD Sbjct: 188 IIVTHD 193 >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 279 Score = 120 bits (302), Expect = 7e-28 Identities = 76/222 (34%), Positives = 117/222 (52%), Gaps = 24/222 (10%) Query: 44 AVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADAN 103 A+ + V +GE + ++G +G+GKSTL + +NGL G + V G V + Sbjct: 22 ALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVG---GMVLSEETVWD 78 Query: 104 VLRKLRMHTVSMVFQ----QFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNL 159 V R+ V MVFQ QF TV +V GLE + +P E RV + L V + Sbjct: 79 VRRQ-----VGMVFQNPDNQFV---GATVQDDVAFGLENIGVPREEMVERVDQALRQVGM 130 Query: 160 TKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKL 219 + + + + LSGG KQRV A A I+++DE S LDP R E+L R+L Sbjct: 131 EDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGR----REVLETVRQL 186 Query: 220 KK----TIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257 K+ T++ ++HD++EA + +R+ +M G I++ GTP+EI Sbjct: 187 KEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEILEEGTPEEI 227 >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional. Length = 250 Score = 120 bits (302), Expect = 7e-28 Identities = 81/243 (33%), Positives = 124/243 (51%), Gaps = 35/243 (14%) Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSIN---GLAPVVR--GEVLVDTDKG 93 YG A+ K NL++++ ++ L+G SG GKST LR++N L P V+ GEVL+D Sbjct: 13 YGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQD- 71 Query: 94 FVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPD-------VER 146 + D N LRK V MVFQQ P ++ NV G I D VE+ Sbjct: 72 -IYKSDIDVNQLRK----RVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEK 125 Query: 147 KSRVAEHLEIVNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSL 200 + A W + K + LSGG +QR+ ARA A +LLMDEP S+L Sbjct: 126 SLKGA--------ALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSAL 177 Query: 201 DPLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILH 260 DP+ +++++ L + K TIV V+H++ +A R+ ++ A G I++ G ++ + Sbjct: 178 DPISTLKIEE--LIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFTN 235 Query: 261 PAN 263 P + Sbjct: 236 PKD 238 >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 Score = 116 bits (293), Expect = 7e-27 Identities = 73/206 (35%), Positives = 106/206 (51%), Gaps = 17/206 (8%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNP-YAADANVLRK 107 NLE+ GEI++L G SG+GK+TLL I GL V G + V Y A L + Sbjct: 25 NLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKV-----LGQELYGASEKELVQ 79 Query: 108 LRMHTVSMVFQQFALLPWRTVARNVELGLEFLD-IPDVERKSRVAEHLEIVNLTKWADCK 166 LR + + +FQ LL + T +NV++ LE + E + R LE V L D Sbjct: 80 LRRN-IGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYY 138 Query: 167 INMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKK----T 222 + LSGG KQRV ARA ++L DEP ++LD + +++ L +KL + T Sbjct: 139 PHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDS----KSGRDVVELMQKLAREQGCT 194 Query: 223 IVFVSHDINEAFRLGNRIAIMEGGRI 248 I+ V+HD N + +RI ME G++ Sbjct: 195 ILIVTHD-NRILDVADRIVHMEDGKL 219 >gnl|CDD|184197 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 287 Score = 116 bits (292), Expect = 9e-27 Identities = 70/217 (32%), Positives = 118/217 (54%), Gaps = 19/217 (8%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD----TDKGFVNPYAADANV 104 N+E++ GE + L+G +G+GKSTL++ +NGL G++++D TDK + Sbjct: 27 NIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKK------VKLSD 80 Query: 105 LRKLRMHTVSMVFQ--QFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLT-- 160 +RK V +VFQ ++ L T+ +++ G L + + E ++RV + IV L Sbjct: 81 IRK----KVGLVFQYPEYQLFE-ETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYE 135 Query: 161 KWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLK 220 + D LSGG K+RV A A IL++DEP + LDP R + +++ L ++ Sbjct: 136 DYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYN 195 Query: 221 KTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257 TI+ VSH + + +L +RI +M G+ GTP+E+ Sbjct: 196 MTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV 232 >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional. Length = 252 Score = 116 bits (292), Expect = 1e-26 Identities = 77/245 (31%), Positives = 120/245 (48%), Gaps = 25/245 (10%) Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSIN---GLAPVVR--GEVLVDTDKG 93 Y A+ +L+ EI L+G SG+GKSTLLRSIN L P V G ++ + Sbjct: 15 YNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGH-- 72 Query: 94 FVNPYA--ADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVA 151 N Y+ D LRK + MVFQQ P ++ NV GL I D + Sbjct: 73 --NIYSPRTDTVDLRK----EIGMVFQQPNPFPM-SIYENVVYGLRLKGIKDKQVLDEAV 125 Query: 152 EHLEIVNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIR 205 E + + W + K + LSGG +QRV AR AT I+L+DEP S+LDP+ Sbjct: 126 EK-SLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISA 184 Query: 206 MRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCY 265 ++++ LL L K T++ V+ + +A R+ +R G +I+ +++ ++P + Sbjct: 185 GKIEETLLGL--KDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMNPKHKE 242 Query: 266 VSEFI 270 ++I Sbjct: 243 TEDYI 247 >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional. Length = 250 Score = 115 bits (288), Expect = 2e-26 Identities = 82/237 (34%), Positives = 118/237 (49%), Gaps = 25/237 (10%) Query: 38 EYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGL-----APVVRGEVLVDTDK 92 +G V + NLE+ I LMG SG+GKSTLLR N L V GEV +D Sbjct: 12 SFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQD 71 Query: 93 GFVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEF--LDIPDVERKSRV 150 F D LR+ V MVFQ +P ++ NV LGL+ L E + RV Sbjct: 72 IF----KMDVIELRR----RVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERV 123 Query: 151 AEHLEIVNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLI 204 LE L W + K + LSGG +QR+ ARA A +LL DEP ++LDP Sbjct: 124 RWALEKAQL--WDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPEN 181 Query: 205 RMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHP 261 +++ L L++ + TIV V+H +A R+ + +A + G+I++ G +E+ +P Sbjct: 182 TAKIESLFLELKKDM--TIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTNP 236 >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional. Length = 253 Score = 114 bits (288), Expect = 3e-26 Identities = 79/245 (32%), Positives = 130/245 (53%), Gaps = 25/245 (10%) Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSIN---GLAPV--VRGEVLVDTDKG 93 YG A+ +LE ++ ++ L+G SG GKST LR +N L P V GE+L+D + Sbjct: 16 YGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGE-- 73 Query: 94 FVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEH 153 N Y +V+ R V MVFQ+ P +++ NV GL + V+ K+ +AE Sbjct: 74 --NIYDPHVDVVELRRR--VGMVFQKPNPFP-KSIFENVAYGLR---VNGVKDKAYLAER 125 Query: 154 LE--IVNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIR 205 +E + + W + K + LSGG +QR+ ARA A +LLMDEP S+LDP+ Sbjct: 126 VERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIAT 185 Query: 206 MRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCY 265 ++++ L + K + TI+ V+H++ +A R+ + A G++I+ G ++I P Sbjct: 186 QKIEE--LIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTRPREKQ 243 Query: 266 VSEFI 270 ++I Sbjct: 244 TEDYI 248 >gnl|CDD|184591 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional. Length = 241 Score = 114 bits (286), Expect = 5e-26 Identities = 73/225 (32%), Positives = 116/225 (51%), Gaps = 18/225 (8%) Query: 50 LEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLR 109 ++ + G I ++G SGAGKSTL++ IN L G +L+D D LR+ Sbjct: 24 VKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILID-GVDIKT---IDVIDLRR-- 77 Query: 110 MHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDV--ERKSRVAEHLEIVNLTK-WADCK 166 + MVFQQ L TV N+E G P + E+ V +L IV L K +A Sbjct: 78 --KIGMVFQQPHLFE-GTVKDNIEYG------PMLKGEKNVDVEYYLSIVGLNKEYATRD 128 Query: 167 INMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFV 226 + LSGG QRV AR A +LL+DEP S+LDP +++ ++ L+ K+ T++++ Sbjct: 129 VKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWI 188 Query: 227 SHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFIQ 271 +H++ +A R+G+ A + G +++ + +P N FIQ Sbjct: 189 THNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTKLFIQ 233 >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 279 Score = 113 bits (285), Expect = 5e-26 Identities = 74/210 (35%), Positives = 115/210 (54%), Gaps = 16/210 (7%) Query: 52 VKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMH 111 VK+GE L ++G +G+GKST +R I+GL G++++D D + NV H Sbjct: 30 VKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDL------LTEENVWDI--RH 81 Query: 112 TVSMVFQ----QFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKI 167 + MVFQ QF TV +V GLE IP E K RV E LE+V + + + + Sbjct: 82 KIGMVFQNPDNQFV---GATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP 138 Query: 168 NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVS 227 LSGG KQRV A A A I+++DE S LDP R+ L + ++ + T++ ++ Sbjct: 139 ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISIT 198 Query: 228 HDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257 HD++E L +R+ +M+ G++ TP+E+ Sbjct: 199 HDLDEV-ALSDRVLVMKNGQVESTSTPREL 227 >gnl|CDD|184193 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional. Length = 280 Score = 113 bits (285), Expect = 7e-26 Identities = 77/218 (35%), Positives = 116/218 (53%), Gaps = 15/218 (6%) Query: 44 AVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADAN 103 A+ NLEVKKGE LV++G +G+GKST+ + +N L G+V VD +D Sbjct: 25 ALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVD------GLDTSDEE 78 Query: 104 VLRKLRMHTVSMVFQ----QFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNL 159 L +R + MVFQ Q + V +V G E L IP E + RV E L+ V + Sbjct: 79 NLWDIR-NKAGMVFQNPDNQ---IVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGM 134 Query: 160 TKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKL 219 ++ ++LSGG KQRV A A ++ DEP + LDP R + + + L +K Sbjct: 135 YEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKY 194 Query: 220 KKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257 TI+ ++H + EA +RI +M+ G+++ GTP+EI Sbjct: 195 GITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEI 231 >gnl|CDD|184133 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional. Length = 258 Score = 113 bits (285), Expect = 8e-26 Identities = 72/221 (32%), Positives = 108/221 (48%), Gaps = 24/221 (10%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD-TDKGFVNPYAADANVLRK 107 +L ++ GE++ ++G +GAGKSTLLR+++G GEV ++ +P A Sbjct: 22 SLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAEL-ARRRAV 80 Query: 108 LRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKI 167 L H+ S+ F P+ TV V +G + E + VA L V+L A Sbjct: 81 LPQHS-SLSF------PF-TVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDY 132 Query: 168 NMLSGGMKQRVGFARAFA------TGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKK 221 LSGG +QRV AR A LL+DEP S+LD Q +L L R+L Sbjct: 133 PQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDL----AHQHHVLRLARQLAH 188 Query: 222 ----TIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEII 258 ++ V HD+N A R +RI ++ GR++ GTP E++ Sbjct: 189 ERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVL 229 >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. Length = 230 Score = 113 bits (284), Expect = 9e-26 Identities = 69/236 (29%), Positives = 112/236 (47%), Gaps = 19/236 (8%) Query: 44 AVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAP----VVRGEVLVDTDKGFVNPYA 99 V NL +K+GE+L L+G SG+GKS +I GL P GE+L+D P Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDG-----RPLL 55 Query: 100 ADANVLRKLRMHTVSMVFQ--QFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIV 157 + +R ++ + Q + A P T+ + L L + ++ + E LE V Sbjct: 56 PLS-----IRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAV 110 Query: 158 NLTKWA---DCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLA 214 L LSGGM QRV A A P L+ DEP + LD + + R+ L Sbjct: 111 GLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRE 170 Query: 215 LQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFI 270 L++ I+ ++HD+ R+ + +A+M+ GRI++ GT +EI +P + + + Sbjct: 171 LRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTRKLL 226 >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional. Length = 232 Score = 112 bits (283), Expect = 1e-25 Identities = 71/220 (32%), Positives = 108/220 (49%), Gaps = 30/220 (13%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108 +L V++GE + ++G SGAGKSTLL I G G + ++ + R Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNG-----QDHTTTPPSRRP- 72 Query: 109 RMHTVSMVFQQFALLPWRTVARNVELGLEFLDIP----DVERKSRVAEHLEIVNLTKWAD 164 VSM+FQ+ L TVA+N+ LGL P + ++ ++ + + Sbjct: 73 ----VSMLFQENNLFSHLTVAQNIGLGLN----PGLKLNAAQREKLHAIARQMGIEDLLA 124 Query: 165 CKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLAL------QRK 218 LSGG +QRV AR PILL+DEPFS+LDP +R E+L L +R+ Sbjct: 125 RLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALR----QEMLTLVSQVCQERQ 180 Query: 219 LKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEII 258 L T++ VSH + +A R+ R ++ GRI G E++ Sbjct: 181 L--TLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELL 218 >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional. Length = 257 Score = 112 bits (281), Expect = 2e-25 Identities = 81/247 (32%), Positives = 129/247 (52%), Gaps = 22/247 (8%) Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLV---------D 89 YG + +L+ G+++ ++G SG+GKST LR IN L G ++V D Sbjct: 15 YGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRD 74 Query: 90 TDKGFVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNV-ELGLEFLDIPDVERKS 148 D AD N LR LR ++MVFQ F L TV NV E ++ L + E + Sbjct: 75 KDGQL---KVADKNQLRLLRTR-LTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARE 130 Query: 149 RVAEHLEIVNLTKWADCKINM-LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMR 207 R ++L V + + A K + LSGG +QRV ARA A +LL DEP S+LDP Sbjct: 131 RAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDP----E 186 Query: 208 LQDELLALQRKLK---KTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANC 264 L E+L + ++L KT+V V+H++ A + + + + G+I + G P+++ +P + Sbjct: 187 LVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNPQSP 246 Query: 265 YVSEFIQ 271 + +F++ Sbjct: 247 RLQQFLK 253 >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. Length = 520 Score = 111 bits (280), Expect = 2e-25 Identities = 71/244 (29%), Positives = 123/244 (50%), Gaps = 27/244 (11%) Query: 30 IKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD 89 + K + G+V AV +LEVK+GEI ++G SGAGK+TL + I G+ GEV V Sbjct: 285 VSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVR 344 Query: 90 --------TDKGFVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNV--ELGLEFL 139 T G R + ++ Q++ L P RTV N+ +GLE Sbjct: 345 VGDEWVDMTKPGPDG---------RGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLEL- 394 Query: 140 DIPDVERKSRVAEHLEIVNLTKWADCKI-----NMLSGGMKQRVGFARAFATGAPILLMD 194 PD + + L++V + +I + LS G + RV A+ I+++D Sbjct: 395 --PDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILD 452 Query: 195 EPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTP 254 EP ++DP+ ++ + +L + ++++T + VSHD++ + +R A+M G+I++ G P Sbjct: 453 EPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDP 512 Query: 255 QEII 258 +EI+ Sbjct: 513 EEIV 516 Score = 81.4 bits (201), Expect = 3e-16 Identities = 67/260 (25%), Positives = 105/260 (40%), Gaps = 34/260 (13%) Query: 30 IKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTL---LRSINGLAPV----- 81 I+ + ++ + + +++GE+L ++G SGAGKS L LR ++ P Sbjct: 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRII 60 Query: 82 -----------------------VRGEVLVDTDKGFVNPYAADANVLRKLRMHTVSMVFQ 118 V G L + F N + R++R M+ + Sbjct: 61 YHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNL---SDKLRRRIRKRIAIMLQR 117 Query: 119 QFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKINMLSGGMKQRV 178 FAL TV NV LE + E R + +E+V L+ LSGG KQRV Sbjct: 118 TFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRV 177 Query: 179 GFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGN 238 AR A + L DEP +LDP + + L + ++V SH L + Sbjct: 178 VLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSD 237 Query: 239 RIAIMEGGRIIQCGTPQEII 258 + +E G I + GTP E++ Sbjct: 238 KAIWLENGEIKEEGTPDEVV 257 >gnl|CDD|183331 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional. Length = 269 Score = 111 bits (280), Expect = 2e-25 Identities = 73/217 (33%), Positives = 104/217 (47%), Gaps = 20/217 (9%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108 +L V +G+I +MG SG GK+TLLR I G GE+L D + + + + Sbjct: 27 SLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGE---------NIPAMSRS 77 Query: 109 RMHTV----SMVFQQFALLPWRTVARNVELGL-EFLDIPDVERKSRVAEHLEIVNLTKWA 163 R++TV SM+FQ AL V NV L E +P S V LE V L A Sbjct: 78 RLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAA 137 Query: 164 DCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPL---IRMRLQDELLALQRKLK 220 + LSGGM +R ARA A +++ DEPF DP+ + ++L E L L Sbjct: 138 KLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISE---LNSALG 194 Query: 221 KTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257 T V VSHD+ E + + I+ +I+ G+ Q + Sbjct: 195 VTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL 231 >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional. Length = 257 Score = 110 bits (277), Expect = 5e-25 Identities = 70/200 (35%), Positives = 107/200 (53%), Gaps = 19/200 (9%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108 +L + G+ + ++G SG GKSTLLR + GL GE+L A L + Sbjct: 32 DLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELL------------AGTAPLAEA 79 Query: 109 RMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKIN 168 R T ++FQ LLPW+ V NV LGL+ + + + L V L A+ Sbjct: 80 REDT-RLMFQDARLLPWKKVIDNVGLGLKG------QWRDAALQALAAVGLADRANEWPA 132 Query: 169 MLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSH 228 LSGG KQRV ARA +LL+DEP +LD L R+ +QD + +L ++ T++ V+H Sbjct: 133 ALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTH 192 Query: 229 DINEAFRLGNRIAIMEGGRI 248 D++EA + +R+ ++E G+I Sbjct: 193 DVSEAVAMADRVLLIEEGKI 212 >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 275 Score = 110 bits (276), Expect = 6e-25 Identities = 79/239 (33%), Positives = 122/239 (51%), Gaps = 24/239 (10%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108 N + +KGE++ L+G +GAGKSTL NG+ GEVL+ P D L ++ Sbjct: 22 NFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKG-----EPIKYDKKSLLEV 76 Query: 109 RMHTVSMVFQQ-----FALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWA 163 R TV +VFQ FA P TV +V G L + E + RV E L+ V + + Sbjct: 77 R-KTVGIVFQNPDDQLFA--P--TVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFE 131 Query: 164 DCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTI 223 + + LSGG K+RV A A I+++DEP S LDP+ ++ L L ++ TI Sbjct: 132 NKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKE-GITI 190 Query: 224 VFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI-----ILHPANC---YVSEFIQKLN 274 + +HD++ +++ +M G+II+ GTP+E+ + AN V+ I+ LN Sbjct: 191 IISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDIETIRKANLRLPRVAHLIEILN 249 >gnl|CDD|169949 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed. Length = 402 Score = 109 bits (273), Expect = 1e-24 Identities = 75/232 (32%), Positives = 116/232 (50%), Gaps = 19/232 (8%) Query: 34 DKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKG 93 D E+G + + +L V++G ++ L+G +GAGK+TLLR+ING G VLV D Sbjct: 8 DLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGD-- 65 Query: 94 FVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELG----LEFLDIPDVERKSR 149 + A A + V+ V Q +L V + VE+G D ++ Sbjct: 66 --DVEALSARAASRR----VASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAA 119 Query: 150 VAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQ 209 V +E + ++AD + LSGG +QRV ARA A P+LL+DEP +SLD + Q Sbjct: 120 VERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLD----INHQ 175 Query: 210 DELLALQRKL---KKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEII 258 L L R+L KT V HD++ A R + + ++ GR+ G P +++ Sbjct: 176 VRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVL 227 >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional. Length = 251 Score = 109 bits (273), Expect = 1e-24 Identities = 80/247 (32%), Positives = 128/247 (51%), Gaps = 28/247 (11%) Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVV-----RGEVLVDTDKG 93 YG + NL++ K E+ +G SG GKST LR N + V +GE+ +D Sbjct: 15 YGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDG--- 71 Query: 94 FVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERK--SRVA 151 ++ Y+ D NV+ L V MVFQ+ P +++ NV G + + ++K V Sbjct: 72 -IDVYSVDTNVV--LLRAKVGMVFQKPNPFP-KSIYDNVAYGPKLHGLAKNKKKLDEIVE 127 Query: 152 EHLEIVNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIR 205 + L V L W + + LSGG +QR+ ARA A +LLMDEP S+LDP+ Sbjct: 128 KSLTSVGL--WEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVAT 185 Query: 206 MRLQDELLALQRKLKK--TIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPAN 263 +++ L ++LKK TI+ V+H + +A ++ +R+A + GRI++ T QEI +P + Sbjct: 186 NVIEN----LIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKNPQS 241 Query: 264 CYVSEFI 270 +I Sbjct: 242 SKTKRYI 248 >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional. Length = 250 Score = 108 bits (270), Expect = 3e-24 Identities = 77/243 (31%), Positives = 118/243 (48%), Gaps = 21/243 (8%) Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAP-----VVRGEVLVDTDKG 93 YG AV +++ K +I ++G SG GK+TLLRSIN + V G++ + Sbjct: 13 YGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFK-GQD 71 Query: 94 FVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEH 153 +P D RK V MVFQ+ P ++ NV G + + R+ E Sbjct: 72 IYDP-QLDVTEYRK----KVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEE 125 Query: 154 LEIVNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMR 207 + W + K + LSGG +QR+ ARA A ++L+DEP S+LDP+ R Sbjct: 126 -SLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQR 184 Query: 208 LQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVS 267 ++ L L TIV V+H+I +A R+ + IA M G +I+ G +EI+ P N Sbjct: 185 IEKLLEELSENY--TIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVERPKNKLTE 242 Query: 268 EFI 270 E++ Sbjct: 243 EYL 245 >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional. Length = 251 Score = 108 bits (270), Expect = 3e-24 Identities = 79/245 (32%), Positives = 125/245 (51%), Gaps = 25/245 (10%) Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSIN---GLAPVVR--GEVLVDTDKG 93 YG A+ NL + + +I L+G SG GKST LR +N L V+ GEVL+D Sbjct: 14 YGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGK-- 71 Query: 94 FVNPYAADANV--LRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVA 151 N Y D +V LRK V MVFQ+ P ++ NV G I D + ++ Sbjct: 72 --NIYDKDVDVVELRK----RVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIV 124 Query: 152 EHLEIVNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIR 205 E + W + K ++ LSGG +QR+ AR A ++LMDEP S+LDP+ Sbjct: 125 EW-ALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPIST 183 Query: 206 MRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCY 265 ++++D ++ L+++ TIV V+H++ +A R+ + A G +I+ ++I L P Sbjct: 184 LKIEDLMVELKKEY--TIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFLEPQKKE 241 Query: 266 VSEFI 270 ++I Sbjct: 242 TEDYI 246 >gnl|CDD|184583 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional. Length = 267 Score = 107 bits (270), Expect = 3e-24 Identities = 82/253 (32%), Positives = 128/253 (50%), Gaps = 43/253 (16%) Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGL-----APVVRGEVL---VDT 90 YG A+ +++ +K +I L+G SG+GKST LRS+N + V G++L +D Sbjct: 30 YGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDI 89 Query: 91 DKGFVNPYAADANVLRKLRMHTVSMVFQQ---FALLPWRTVARNVELGLEFLDIPD---- 143 ++ +N Y ++R H + MVFQ+ FA +++ N+ LE + D Sbjct: 90 NRKEINVY--------EMRKH-IGMVFQRPNPFA----KSIYENITFALERAGVKDKKVL 136 Query: 144 ---VERKSRVAEHLEIV--NLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFS 198 VE + A + V +L K A LSGG +QR+ ARA A ILLMDEP S Sbjct: 137 DEIVETSLKQAALWDQVKDDLHKSA----LTLSGGQQQRLCIARAIAVKPDILLMDEPAS 192 Query: 199 SLDPLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEII 258 +LDP+ M+L++ + L K TI+ V+H++ +A R + A G +I+ + I Sbjct: 193 ALDPISTMQLEETMFEL--KKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIF 250 Query: 259 LHP----ANCYVS 267 +P N YVS Sbjct: 251 TNPKLQSTNDYVS 263 >gnl|CDD|130034 TIGR00960, 3a0501s02, Type II (General) Secretory Pathway (IISP) Family protein. Length = 216 Score = 106 bits (267), Expect = 7e-24 Identities = 73/205 (35%), Positives = 98/205 (47%), Gaps = 16/205 (7%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRK- 107 N + KGE++ L+G SGAGKST L+ I G+ RG++ + G D LR Sbjct: 23 NFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFN---GQ------DLTRLRGR 73 Query: 108 ----LRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWA 163 LR H + MVFQ LL RTV NV L + +P + RV+ LE V L A Sbjct: 74 EIPFLRRH-IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKA 132 Query: 164 DCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTI 223 LSGG +QRV ARA P+LL DEP +LDP + + R T+ Sbjct: 133 HALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR-RGTTV 191 Query: 224 VFVSHDINEAFRLGNRIAIMEGGRI 248 + +HDIN +R + GR+ Sbjct: 192 LVATHDINLVETYRHRTLTLSRGRL 216 >gnl|CDD|184124 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional. Length = 306 Score = 106 bits (267), Expect = 7e-24 Identities = 77/230 (33%), Positives = 112/230 (48%), Gaps = 10/230 (4%) Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPY 98 YG V + V++GE L+G +GAGK+T LR + GL G + + G P Sbjct: 17 YGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISL---CGEPVPS 73 Query: 99 AADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVN 158 A R R V +V Q L P TV N+ + + + ++ V LE Sbjct: 74 RA-----RHARQR-VGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAK 127 Query: 159 LTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRK 218 L AD K+ LSGGMK+R+ ARA +L++DEP + LDP R + + L +L + Sbjct: 128 LENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLAR 187 Query: 219 LKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSE 268 KTI+ +H + EA RL +R+ ++E GR I G P +I C V E Sbjct: 188 -GKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIESEIGCDVIE 236 >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional. Length = 265 Score = 106 bits (265), Expect = 1e-23 Identities = 82/245 (33%), Positives = 131/245 (53%), Gaps = 23/245 (9%) Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSIN---GLAPVVR--GEVLVDTDKG 93 YG A+ N+ V + ++ L+G SG GKST LR N L P GE+++ D Sbjct: 26 YGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDN- 84 Query: 94 FVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEH 153 VN + + + + ++RM +SMVFQ+ P +++ NV GL I V+R+S + E Sbjct: 85 -VNILSPEVDPI-EVRMR-ISMVFQKPNPFP-KSIFENVAYGLR---IRGVKRRSILEER 137 Query: 154 LE--IVNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIR 205 +E + N W + K + LSGG +QR+ ARA AT ILL DEP S+LDP+ Sbjct: 138 VENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIAT 197 Query: 206 MRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCY 265 +++ + L+ K+ TI+ V+H++ +A R+ + A M G +I+ G I + P N Sbjct: 198 ASIEELISDLKNKV--TILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIFIKPKNKQ 255 Query: 266 VSEFI 270 ++I Sbjct: 256 TEDYI 260 >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. Length = 190 Score = 105 bits (265), Expect = 1e-23 Identities = 67/193 (34%), Positives = 100/193 (51%), Gaps = 22/193 (11%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108 N ++GE+L L+G +GAGKSTLL +NGL G VL+D + P L + Sbjct: 12 NFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGE-----PLDYSRKGLLER 66 Query: 109 RMHTVSMVFQQ-----FALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWA 163 R V +VFQ FA V ++V G L + + E + RV E L V + Sbjct: 67 RQR-VGLVFQDPDDQLFA----ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLR 121 Query: 164 DCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLK--- 220 + + LSGG K+RV A A A +LL+DEP + LDP ++++LA+ R+L+ Sbjct: 122 ERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDP----AGREQMLAILRRLRAEG 177 Query: 221 KTIVFVSHDINEA 233 T+V +HD++ A Sbjct: 178 MTVVISTHDVDLA 190 >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional. Length = 251 Score = 105 bits (263), Expect = 2e-23 Identities = 75/244 (30%), Positives = 128/244 (52%), Gaps = 23/244 (9%) Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAP-----VVRGEVLVDTDKG 93 YG A+ +L+ ++ E+ L+G SG GKST LR +N + + GE+ + Sbjct: 14 YGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQ-- 71 Query: 94 FVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVER-KSRVAE 152 N Y + + L +LR V MVFQQ P+ +V NV GL+ + D E RV E Sbjct: 72 --NIYGSKMD-LVELR-KEVGMVFQQPTPFPF-SVYDNVAYGLKIAGVKDKELIDQRVEE 126 Query: 153 HLEIVNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRM 206 L+ + W + K N+ SGG +QR+ ARA A ++L+DEP S+LDP+ Sbjct: 127 SLKQAAI--WKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSS 184 Query: 207 RLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYV 266 +++ L+ L+ + T + V+H++ +A R+ ++ A + G +I+ G +E+ + P Sbjct: 185 EIEETLMELKHQY--TFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIAPKKQIT 242 Query: 267 SEFI 270 S+++ Sbjct: 243 SDYL 246 >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional. Length = 252 Score = 105 bits (263), Expect = 2e-23 Identities = 83/239 (34%), Positives = 123/239 (51%), Gaps = 30/239 (12%) Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSIN---GLAPVVR--GEVLVDTDKG 93 YG AV NL+V++G + L+G SG GK+T LR+IN L P R G +L+D Sbjct: 14 YGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDI 73 Query: 94 F---VNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRV 150 + V+P A +R+ V MVFQ+ P +V NV GL+ I D + V Sbjct: 74 YGPRVDPVA-----MRR----RVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEV 124 Query: 151 AEHLEIVNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLI 204 AE + W + K + LSGG +QR+ ARA A ILLMDEP S+LDP Sbjct: 125 AER-SLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPAS 183 Query: 205 RMRLQDELLALQRKLKK--TIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHP 261 R++D L LKK TI+ V+H++++A R+ + + G +++ G ++ +P Sbjct: 184 TARIED----LMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTNP 238 >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 269 Score = 104 bits (261), Expect = 4e-23 Identities = 75/214 (35%), Positives = 112/214 (52%), Gaps = 24/214 (11%) Query: 52 VKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMH 111 + KG+ ++G +G+GKST+ + + G+ V GE+ F N A + KLR H Sbjct: 32 IPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI-------FYNNQAITDDNFEKLRKH 84 Query: 112 TVSMVFQ----QFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKI 167 + +VFQ QF V +V GLE +P E RV+E L+ V++ + AD + Sbjct: 85 -IGIVFQNPDNQFV---GSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEP 140 Query: 168 NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKK----TI 223 N LSGG KQRV A A ++++DE S LDP R LL L RK+K TI Sbjct: 141 NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDAR----QNLLDLVRKVKSEHNITI 196 Query: 224 VFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257 + ++HD++EA + + +M G + + GTP EI Sbjct: 197 ISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEI 229 >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. Length = 265 Score = 104 bits (260), Expect = 4e-23 Identities = 77/224 (34%), Positives = 120/224 (53%), Gaps = 19/224 (8%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108 +L +++GE + L+G SG GKSTL R + GL +G V +G + Y D R Sbjct: 31 SLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSF---RG-QDLYQLDRKQRRAF 86 Query: 109 RMHTVSMVFQQF--ALLPWRTVARNVELGLE-FLDIPDVERKSRVAEHLEIVNL-TKWAD 164 R V +VFQ A+ P TV + + L + + E+K+R+AE L++V L ++ AD Sbjct: 87 R-RDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDAD 145 Query: 165 CKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKK--- 221 LSGG QR+ ARA A ++++DE S+LD M LQ +L L RKL++ Sbjct: 146 KLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLD----MVLQAVILELLRKLQQAFG 201 Query: 222 -TIVFVSHDINEAFRLGNRIAIMEGGRII-QCGTPQEIIL-HPA 262 +F++HD+ R+A+M+ G+I+ +C Q + HPA Sbjct: 202 TAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLSFKHPA 245 >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional. Length = 253 Score = 103 bits (259), Expect = 6e-23 Identities = 77/233 (33%), Positives = 122/233 (52%), Gaps = 24/233 (10%) Query: 45 VIKA-NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPV-----VRGEVLVDTDKGFVNPY 98 VIK +L++ + + LMG SG GKSTLLR+ N L + V GEV + N Y Sbjct: 19 VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFG----RNIY 74 Query: 99 AADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEF--LDIPDVERKSRVAEHLEI 156 + D + + R V MVFQ P T+ NV +G++ L E RV L+ Sbjct: 75 SPDVDPIEVRR--EVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKK 132 Query: 157 VNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQD 210 L W + K + LSGG +QR+ ARA A ILLMDEP +++DP+ ++++ Sbjct: 133 AAL--WDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEE 190 Query: 211 ELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPAN 263 L L+++ TIV V+H +A R+ + +A + G++I+ G +++ +P + Sbjct: 191 LLFELKKEY--TIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENPEH 241 >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional. Length = 255 Score = 103 bits (259), Expect = 7e-23 Identities = 70/234 (29%), Positives = 110/234 (47%), Gaps = 33/234 (14%) Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPY 98 YG + +L + G+I L+G +G GKSTLL+ L G V + P Sbjct: 12 YGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGD-----KPI 66 Query: 99 AADANVLRKLRMHTVSMVFQQFALLPWR-------TVARNVELG----LEFLDIPDVERK 147 + ++ R+L ++ ALLP TV V G L E Sbjct: 67 SMLSS--RQLA--------RRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDN 116 Query: 148 SRVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMR 207 +RV + +E + AD ++ LSGG +QR A A P++L+DEP + LD + Sbjct: 117 ARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLD----IN 172 Query: 208 LQDELLALQRKLK---KTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEII 258 Q EL+ L R+L KT+V V HD+N+A R + + ++ G ++ GTP+E++ Sbjct: 173 HQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM 226 >gnl|CDD|184595 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional. Length = 250 Score = 103 bits (257), Expect = 8e-23 Identities = 76/232 (32%), Positives = 117/232 (50%), Gaps = 19/232 (8%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSIN---GLAPVVRGEVLVDTDKGFVNPYAADANVL 105 NL++ K + L+G SG GKST +R++N L P R E + D + A D L Sbjct: 23 NLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVEL 82 Query: 106 RKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVER-KSRVAEHLEIVNLTKWAD 164 RK V MVFQ+ P +++ NV GL D + + RV E L+ L W + Sbjct: 83 RK----KVGMVFQKPNPFP-KSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAAL--WDE 135 Query: 165 CKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRK 218 K + LSGG +QR+ AR A ++LMDEP S+LDP+ +++D L + K Sbjct: 136 VKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIED--LIHKLK 193 Query: 219 LKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFI 270 TIV V+H++ +A R+ + G II+ G +I ++P + ++I Sbjct: 194 EDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFINPKDKRTEDYI 245 >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional. Length = 252 Score = 103 bits (257), Expect = 1e-22 Identities = 77/245 (31%), Positives = 129/245 (52%), Gaps = 25/245 (10%) Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSIN---GLAP--VVRGEVLVDTDKG 93 YG A+ +L+ + EI L+G SG GKST LR++N L P + G V + Sbjct: 15 YGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQ-- 72 Query: 94 FVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEH 153 N YA + +V+ +LR V MVFQQ P+ ++ NV GL + D K+ + E Sbjct: 73 --NIYAPNEDVV-QLRKQ-VGMVFQQPNPFPF-SIYENVIYGLRLAGVKD---KAVLDEA 124 Query: 154 LE--IVNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIR 205 +E + W + K ++ LSGG +QRV AR A ++L+DEP S+LDP+ Sbjct: 125 VETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISS 184 Query: 206 MRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCY 265 ++++ LL L+ + TI+ V+H +++A R+ ++ A G +I+ +++ L+P Sbjct: 185 TQIENMLLELRDQY--TIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFLNPKEKE 242 Query: 266 VSEFI 270 ++I Sbjct: 243 TEDYI 247 >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional. Length = 258 Score = 101 bits (254), Expect = 2e-22 Identities = 80/248 (32%), Positives = 126/248 (50%), Gaps = 38/248 (15%) Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPV-----VRGEVLVDTDKG 93 YG AV NL ++ + +G SG GKST+LR++N + V V GEVL+D + Sbjct: 14 YGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGE-- 71 Query: 94 FVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKS----R 149 + Y + + R T+ MVFQ+ P ++ NV GL+ + V K Sbjct: 72 --DLYGPGVDPVAVRR--TIGMVFQRPNPFPTMSIRDNVVAGLK---LNGVRNKKDLDEL 124 Query: 150 VAEHLEIVNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPL 203 V + L NL W + K + LSGG +QR+ ARA A +LLMDEP S+LDP+ Sbjct: 125 VEKSLRGANL--WNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPI 182 Query: 204 IRMRLQDELLALQRKLKK--TIVFVSHDINEAFRLGNRIAI--MEG----GRIIQCGTPQ 255 + ++D L +LK+ TIV V+H++ +A R+ ++ A +E GR+++ + Sbjct: 183 STLAIED----LINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTE 238 Query: 256 EIILHPAN 263 +I +P Sbjct: 239 KIFSNPTQ 246 >gnl|CDD|184589 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional. Length = 268 Score = 101 bits (254), Expect = 2e-22 Identities = 73/246 (29%), Positives = 128/246 (52%), Gaps = 27/246 (10%) Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSIN---GLAPVVR--GEVLVDTDKG 93 YG AV +++++K + L+G SG GKST LRSIN L P R GE+L + Sbjct: 31 YGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG--- 87 Query: 94 FVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEH 153 +N ++ NV+ R + MVFQ+ P +++ N+ L++ ER+ V + Sbjct: 88 -LNILDSNINVVNLRR--EIGMVFQKPNPFP-KSIYNNITHALKYAG----ERRKSVLDE 139 Query: 154 LEIVNLTK---WADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLI 204 + +LTK W + K + LSGG +QR+ AR A +LL+DEP S+LDP+ Sbjct: 140 IVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPIS 199 Query: 205 RMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANC 264 ++++ + L+ + +I+ V+H++ +A R+ +R A G +++ ++I P Sbjct: 200 NAKIEELITELKEEY--SIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFTSPKQQ 257 Query: 265 YVSEFI 270 ++I Sbjct: 258 KTEDYI 263 >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional. Length = 228 Score = 101 bits (254), Expect = 2e-22 Identities = 69/196 (35%), Positives = 95/196 (48%), Gaps = 4/196 (2%) Query: 50 LEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLR 109 L VK+GE + L+G SG+GKSTLL + GL GEV + + D KLR Sbjct: 31 LVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQ----PLHQMDEEARAKLR 86 Query: 110 MHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKINM 169 V VFQ F L+P NVEL + ++ LE + L K D Sbjct: 87 AKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQ 146 Query: 170 LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSHD 229 LSGG +QRV ARAF +L DEP +LD ++ D L +L R+ T++ V+HD Sbjct: 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHD 206 Query: 230 INEAFRLGNRIAIMEG 245 + A R R+ ++ G Sbjct: 207 LQLAARCDRRLRLVNG 222 >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional. Length = 250 Score = 101 bits (252), Expect = 3e-22 Identities = 79/239 (33%), Positives = 123/239 (51%), Gaps = 31/239 (12%) Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLR---SINGLAPVVR--GEVLVDTDKG 93 YG A+ ++E+++ ++ +G SG GKST LR +N L P R GE+ +D Sbjct: 13 YGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGR-- 70 Query: 94 FVNPYAADANV--LRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVER-KSRV 150 N Y V LRK V MVFQ+ P +++ NV GL + D + RV Sbjct: 71 --NIYDKGVQVDELRK----NVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRV 123 Query: 151 AEHLEIVNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLI 204 E L+ L W + K + LSGG +QR+ ARA A +LLMDEP S+LDP+ Sbjct: 124 EETLKGAAL--WDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPIS 181 Query: 205 RMRLQDELLALQRKLKK--TIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHP 261 ++++ L +LKK TIV V+H++ +A R+ ++ A G +++ ++I +P Sbjct: 182 TAKVEE----LIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTNP 236 >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional. Length = 251 Score = 100 bits (251), Expect = 4e-22 Identities = 76/237 (32%), Positives = 121/237 (51%), Gaps = 29/237 (12%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVV-----RGEVLVDTDKGFVNPYAADAN 103 N++ + +I ++G SG GKSTLLR++N + +V G VL+D + N Y+ + + Sbjct: 24 NMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNE----NIYSPNLD 79 Query: 104 V--LRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTK 161 V LRK V MVFQQ P +++ NV G L R V E + Sbjct: 80 VVNLRK----RVGMVFQQPNPFP-KSIFDNVAFGPRMLGTTAQSRLDEVVEK-SLRQAAL 133 Query: 162 WADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLAL 215 W + K N+ LSGG +QR+ AR A ++LMDEP S+LDP+ MR+++ L Sbjct: 134 WDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEE----L 189 Query: 216 QRKLKK--TIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFI 270 ++LK+ TI V+H++ +A R + + G +++ G EI P + ++I Sbjct: 190 MQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSRPRDKRTEDYI 246 >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 288 Score = 100 bits (251), Expect = 4e-22 Identities = 71/217 (32%), Positives = 112/217 (51%), Gaps = 9/217 (4%) Query: 44 AVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADAN 103 A+ +LEVKKG L+G +G+GKSTLL+ +NGL G+V V V + Sbjct: 21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGD---IVVSSTSKQK 77 Query: 104 VLRKLRMHTVSMVFQ-QFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTK- 161 ++ +R V +VFQ + L TV ++V G + IP + + AE LE+V L Sbjct: 78 EIKPVR-KKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADE 136 Query: 162 -WADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLK 220 W LSGG +RV A A +L++DEP + LDP R+ + +L + Sbjct: 137 FWEKSPFE-LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMM-QLFESIHQSG 194 Query: 221 KTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257 +T+V V+H +++ + + ++E G II CGTP ++ Sbjct: 195 QTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231 >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. Length = 223 Score = 100 bits (251), Expect = 5e-22 Identities = 80/220 (36%), Positives = 112/220 (50%), Gaps = 33/220 (15%) Query: 50 LEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLR 109 L KGE+L L+G +GAGK+TLLR+I GL P +G V V K Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVA------------GASPGKGW 48 Query: 110 MHTVSMVFQ--QFALLPWR---TVARNVELG----LEFLDIPDVERKSRVAEHLEIVNLT 160 H + V Q +FA W +VA V G + +L P V + V + L V LT Sbjct: 49 RH-IGYVPQRHEFA---WDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLT 104 Query: 161 KWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLK 220 + AD + LSGG +QRV ARA AT +LL+DEPF+ LD M Q+ L L +L Sbjct: 105 ELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLD----MPTQELLTELFIELA 160 Query: 221 K---TIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257 I+ +HD+ +A +R+ ++ GR+I GTPQ++ Sbjct: 161 GAGTAILMTTHDLAQAMATCDRVVLLN-GRVIADGTPQQL 199 >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional. Length = 259 Score = 100 bits (250), Expect = 6e-22 Identities = 73/245 (29%), Positives = 128/245 (52%), Gaps = 25/245 (10%) Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSIN---GLAPVVR--GEVLVDTDKG 93 YG A+ NL + + E+ ++G SG GKST ++++N + P V+ GE+ + Sbjct: 22 YGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSN- 80 Query: 94 FVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEH 153 + D LRK + MVFQ+ P +++ NV G I + K ++ E Sbjct: 81 -ILKGKVDLVELRK----NIGMVFQKGNPFP-QSIFDNVAYGPR---IHGTKNKKKLQEI 131 Query: 154 LE--IVNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIR 205 +E + ++ W + K + LSGG +QR+ ARA AT +LLMDEP S+LDP+ Sbjct: 132 VEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVST 191 Query: 206 MRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCY 265 ++++ +L L K K TIV V+H++ +A R+ ++ A G +++C ++ +P + Sbjct: 192 RKIEELILKL--KEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSNPDDQR 249 Query: 266 VSEFI 270 ++I Sbjct: 250 TLDYI 254 >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional. Length = 262 Score = 100 bits (250), Expect = 6e-22 Identities = 72/226 (31%), Positives = 110/226 (48%), Gaps = 18/226 (7%) Query: 44 AVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGL-----APVVRGEVLVDTDKGFVNPY 98 A+ +L + GE++ L+G SG+GKSTLLR ++GL + E+L T V Sbjct: 19 ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRT----VQRE 74 Query: 99 AADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGL--------EFLDIPDVERKSRV 150 A +RK R +T +FQQF L+ +V NV +G E+K R Sbjct: 75 GRLARDIRKSRANT-GYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRA 133 Query: 151 AEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQD 210 + L V + +A +++ LSGG +QRV ARA A ++L DEP +SLDP + D Sbjct: 134 LQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMD 193 Query: 211 ELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQE 256 L + + T+V H ++ A R RI + G + G+ Q+ Sbjct: 194 TLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQ 239 >gnl|CDD|184123 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional. Length = 340 Score = 100 bits (250), Expect = 7e-22 Identities = 74/230 (32%), Positives = 113/230 (49%), Gaps = 10/230 (4%) Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPY 98 YG + V + V GE L+G +GAGKST+ R I G+ G++ V P Sbjct: 51 YGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITV-----LGVPV 105 Query: 99 AADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVN 158 A A + R + +V Q L TV N+ + + + E ++ + LE Sbjct: 106 PARARLARA----RIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFAR 161 Query: 159 LTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRK 218 L AD +++ LSGGMK+R+ ARA +L++DEP + LDP R + + L +L + Sbjct: 162 LESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLAR 221 Query: 219 LKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSE 268 KTI+ +H + EA RL +R+ ++E GR I G P +I C V E Sbjct: 222 -GKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDEHIGCQVIE 270 >gnl|CDD|182444 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional. Length = 268 Score = 99.8 bits (249), Expect = 9e-22 Identities = 67/206 (32%), Positives = 103/206 (50%), Gaps = 11/206 (5%) Query: 50 LEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEV-LVDTDKGFVNPYAADANVLRKL 108 L +K GE + L+G SG GKSTL R + GL +G V +N A R+ Sbjct: 33 LSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLN--RAQRKAFRR- 89 Query: 109 RMHTVSMVFQQF--ALLPWRTVARNVELGLEFL-DIPDVERKSRVAEHLEIVNLT-KWAD 164 + MVFQ A+ P +TV + L L + ER +R +E L V+L D Sbjct: 90 ---DIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLD 146 Query: 165 CKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIV 224 + LSGG QRV ARA A +L++DE S+LD +++ + L LQ++ + Sbjct: 147 KRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACL 206 Query: 225 FVSHDINEAFRLGNRIAIMEGGRIIQ 250 F++HD+ R R+ +M+ G+I++ Sbjct: 207 FITHDLRLVERFCQRVMVMDNGQIVE 232 >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional. Length = 249 Score = 99 bits (249), Expect = 9e-22 Identities = 72/234 (30%), Positives = 116/234 (49%), Gaps = 22/234 (9%) Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRG-----EVLVDTDKG 93 YG A+ NL + ++ L+G SG GKSTLLR +N + ++ G ++ +D + Sbjct: 13 YGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDI 72 Query: 94 FVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEH 153 + N AD LR+ V MVFQ+ P ++ NV GL I D + V E Sbjct: 73 YGNIDVAD------LRIK-VGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVER 124 Query: 154 LEIVNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMR 207 + W + K + LSGG +QR+ AR A ++LMDEP S+LDP+ + Sbjct: 125 -SLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHK 183 Query: 208 LQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHP 261 +++ + L++ TIV V+H + +A R+ +R A G +++ Q I +P Sbjct: 184 IEELMEELKKNY--TIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFSNP 235 >gnl|CDD|184192 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 271 Score = 99.7 bits (249), Expect = 1e-21 Identities = 61/213 (28%), Positives = 112/213 (52%), Gaps = 16/213 (7%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108 + E+ +GE + ++G +G+GKST+ + + GL GE+ +D L+++ Sbjct: 29 SFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDG-------ITISKENLKEI 81 Query: 109 RMHTVSMVFQ----QFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWAD 164 R + ++FQ QF TV ++ GLE +P + K + + + V + + D Sbjct: 82 RKK-IGIIFQNPDNQFIGA---TVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLD 137 Query: 165 CKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIV 224 + LSGG KQRV A A I++ DE S LDP + ++ ++ L++ KKT++ Sbjct: 138 KEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLI 197 Query: 225 FVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257 ++HD++EA L +++ + G++I G P+EI Sbjct: 198 SITHDMDEAI-LADKVIVFSEGKLIAQGKPKEI 229 >gnl|CDD|184592 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional. Length = 285 Score = 99.1 bits (247), Expect = 1e-21 Identities = 75/246 (30%), Positives = 127/246 (51%), Gaps = 28/246 (11%) Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGL-----APVVRGEVLVDTDKG 93 YG A+ ++++ + ++ ++G SG GKST LR IN + A V GE+ Sbjct: 49 YGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGK-- 106 Query: 94 FVNPYAADAN--VLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVA 151 N Y AD + LR+ + MVFQ+ P +++ NV GL+ D + RV Sbjct: 107 --NVYDADVDPVALRR----RIGMVFQKPNPFP-KSIYDNVAYGLKIQGY-DGDIDERVE 158 Query: 152 EHLEIVNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIR 205 E L L W + K + LSGG +QR+ ARA A ++LMDEP S+LDP+ Sbjct: 159 ESLRRAAL--WDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVAT 216 Query: 206 MRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAI-MEGGRIIQCGTPQEIILHPANC 264 +++D + L + T+V V+H++ +A R+ ++ A+ + GG +++ +I +P + Sbjct: 217 SKIEDLIEELAEEY--TVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIFENPESQ 274 Query: 265 YVSEFI 270 V ++I Sbjct: 275 RVEDYI 280 >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional. Length = 257 Score = 99.0 bits (246), Expect = 1e-21 Identities = 71/228 (31%), Positives = 114/228 (50%), Gaps = 13/228 (5%) Query: 50 LEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNP--YAADANVLRK 107 +++ I +MG SG+GKSTLL+ +N L + ++ VD + + DA LRK Sbjct: 31 IKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRK 90 Query: 108 LRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDV-ERKSRVAEHLEIVNLTKWADCK 166 V MVFQQ P ++ N+ L+ I + E K V E L V L K + Sbjct: 91 ----EVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDR 146 Query: 167 IN----MLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKT 222 +N LSGG +QR+ ARA A +LLMDEP S +D + ++ + L+ ++ Sbjct: 147 LNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEI--A 204 Query: 223 IVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFI 270 IV VSH+ + R+ + +A + G +++ G+ EI P N +++ Sbjct: 205 IVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNELTEKYV 252 >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional. Length = 352 Score = 98.8 bits (247), Expect = 2e-21 Identities = 79/242 (32%), Positives = 113/242 (46%), Gaps = 60/242 (24%) Query: 47 KANLEVKKGEILVLMGLSGAGKSTLLRSINGL-AP-----VVRGEVLVDTDKG-FVNPYA 99 NL + I + G SGAGK++L+ +I+GL P V+ G VL D +KG + P Sbjct: 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPE- 74 Query: 100 ADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNL 159 R+ + VFQ L P V N+ G+ KS VA+ +IV L Sbjct: 75 -----KRR-----IGYVFQDARLFPHYKVRGNLRYGM---------AKSMVAQFDKIVAL 115 Query: 160 ------------TKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMR 207 + LSGG KQRV RA T +LLMDEP +SLD L R R Sbjct: 116 LGIEPLLDRYPGS---------LSGGEKQRVAIGRALLTAPELLLMDEPLASLD-LPRKR 165 Query: 208 LQDELLA----LQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI----IL 259 ELL L R++ I++VSH ++E RL +R+ ++E G++ G +E+ + Sbjct: 166 ---ELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSAM 222 Query: 260 HP 261 P Sbjct: 223 RP 224 >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. Length = 221 Score = 98.6 bits (246), Expect = 2e-21 Identities = 69/200 (34%), Positives = 103/200 (51%), Gaps = 5/200 (2%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108 +L + KGEI+ ++G SG+GKSTLL + GL GEVL + + +N KL Sbjct: 25 SLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNG----QSLSKLSSNERAKL 80 Query: 109 RMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKIN 168 R + ++Q LLP T NV + L E K R E LE V L + + + Sbjct: 81 RNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPS 140 Query: 169 MLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSH 228 LSGG +QRV ARA ++L DEP +LD + D +L L R+L + + V+H Sbjct: 141 ELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTH 200 Query: 229 DINEAFRLGNRIAIMEGGRI 248 D+ A +L +R+ M+ G++ Sbjct: 201 DLELAKKL-DRVLEMKDGQL 219 >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional. Length = 260 Score = 98.5 bits (246), Expect = 2e-21 Identities = 80/238 (33%), Positives = 118/238 (49%), Gaps = 27/238 (11%) Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSIN---GLAPVVR--GEVLVDTDKG 93 YG A+ NL++ K ++ +G SG GKSTLLR+ N L P R GE+L+D + Sbjct: 23 YGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENI 82 Query: 94 FVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLE-FLDIPDVERKSRVAE 152 D +LR V MVFQ+ P ++ N+ G+ F + E RV Sbjct: 83 LTPKQ--DIALLRA----KVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEW 135 Query: 153 HLEIVNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRM 206 L L W + K + LSGG +QR+ AR A +LL+DEP S+LDP+ Sbjct: 136 ALTKAAL--WNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTG 193 Query: 207 RLQDELLALQRKLKK--TIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPA 262 R++ EL+ +LK+ T+V V+H++ +A R + A M G +I+ G I PA Sbjct: 194 RIE-ELIT---ELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIFTKPA 247 >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. Length = 303 Score = 98.1 bits (244), Expect = 3e-21 Identities = 73/230 (31%), Positives = 114/230 (49%), Gaps = 10/230 (4%) Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPY 98 YG V + + +GE L+G +GAGKST+ R + G+ RG++ V P Sbjct: 14 YGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITV-----LGEPV 68 Query: 99 AADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVN 158 + A + R + +V Q L P TV N+ + + + E ++ + LE Sbjct: 69 PSRARLARV----AIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFAR 124 Query: 159 LTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRK 218 L AD ++ +LSGGMK+R+ ARA +L++DEP + LDP R + + L +L Sbjct: 125 LESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLL-A 183 Query: 219 LKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSE 268 KTI+ +H + EA RL +R+ ++E GR I G P +I C V E Sbjct: 184 RGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDEQIGCNVIE 233 >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional. Length = 252 Score = 97.0 bits (241), Expect = 6e-21 Identities = 75/248 (30%), Positives = 123/248 (49%), Gaps = 30/248 (12%) Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSIN---GLAPVVR--GEVLVDT--- 90 +G AV +++ + + ++G SG GKST+LRSIN L P R G++L+D Sbjct: 14 FGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDI 73 Query: 91 -DKGFVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLD-IPDVERKS 148 D+G D +R+ V MVFQ+ P ++ NV G + + E Sbjct: 74 YDRG------VDPVSIRR----RVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADE 123 Query: 149 RVAEHLEIVNLTKWADCKIN------MLSGGMKQRVGFARAFATGAPILLMDEPFSSLDP 202 V L+ V L W + K LSGG +QR+ AR A ++LMDEP S+LDP Sbjct: 124 IVESSLKRVAL--WDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDP 181 Query: 203 LIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPA 262 + +++++ L + K K TI+ V+H++ +A R+ + A G +++CG ++I P Sbjct: 182 ISTLKIEE--LIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFTTPE 239 Query: 263 NCYVSEFI 270 ++I Sbjct: 240 KKQTEDYI 247 >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 283 Score = 97.2 bits (242), Expect = 6e-21 Identities = 68/214 (31%), Positives = 111/214 (51%), Gaps = 15/214 (7%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108 N+ +KKGE+ ++G +GAGKSTL +++NG+ G +L D P L KL Sbjct: 26 NINIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDG-----KPIDYSRKGLMKL 80 Query: 109 RMHTVSMVFQQ-----FALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWA 163 R +V MVFQ F+ +V ++V G L +P+ E + RV L+ + Sbjct: 81 R-ESVGMVFQDPDNQLFS----ASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLK 135 Query: 164 DCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTI 223 D + LS G K+RV A +L++DEP + LDP+ + L+ +Q++L TI Sbjct: 136 DKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTI 195 Query: 224 VFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257 + +HDI+ + + +M+ GR+I G P+E+ Sbjct: 196 IIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 229 >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional. Length = 272 Score = 96.2 bits (240), Expect = 1e-20 Identities = 74/243 (30%), Positives = 117/243 (48%), Gaps = 35/243 (14%) Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVV-----RGEVLVDTDKG 93 YG A+ ++ + K + +G SG GKSTLLR N + +V GE+ +D Sbjct: 35 YGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQN- 93 Query: 94 FVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPD-------VER 146 + D LR+ V MVFQ+ P +++ NV GL I + VER Sbjct: 94 -IYDKKVDVAELRR----RVGMVFQRPNPFP-KSIYENVVYGLRLQGINNRRVLDEAVER 147 Query: 147 KSRVAEHLEIVNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSL 200 R A W + K + LSGG +QR+ ARA A +LL+DEP S+L Sbjct: 148 SLRGA--------ALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSAL 199 Query: 201 DPLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILH 260 DP+ +++++ + L+ K TIV V+H++ +A R+ + A M G++++ G + Sbjct: 200 DPISTLKIEELITELKSKY--TIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLFTS 257 Query: 261 PAN 263 PA Sbjct: 258 PAK 260 >gnl|CDD|163042 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 Score = 96.2 bits (240), Expect = 1e-20 Identities = 64/198 (32%), Positives = 91/198 (45%), Gaps = 16/198 (8%) Query: 44 AVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADAN 103 A+ + V GE + L+G SGAGKSTLL + G G + V+ V ADA+ Sbjct: 337 ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNG----VPLADADAD 392 Query: 104 VLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVN-LTKW 162 R ++ V Q L T+A N+ L ++ R A E V L + Sbjct: 393 SWRD----QIAWVPQHPFLFA-GTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQG 447 Query: 163 ADCKI----NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRK 218 D I LSGG QR+ ARAF AP+LL+DEP + LD + + L AL + Sbjct: 448 LDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQ- 506 Query: 219 LKKTIVFVSHDINEAFRL 236 +T++ V+H + A R Sbjct: 507 -GRTVLLVTHRLALAERA 523 >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional. Length = 261 Score = 95.5 bits (237), Expect = 2e-20 Identities = 78/253 (30%), Positives = 129/253 (50%), Gaps = 33/253 (13%) Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPY 98 YG AV +++ ++K EI +G SG GKST+LRS+N + +V+G +G V+ Sbjct: 18 YGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRF----EGHVHFL 73 Query: 99 AAD---ANVLRKLRMHTVSMVFQQ---FALLPWRTVARNVELGLEFLDIPDVERKSRVAE 152 D V + + MVFQQ F++ ++ NV GL L+ + RV Sbjct: 74 GQDVYGKGVDPVVVRRYIGMVFQQPNPFSM----SIFDNVAFGLR-LNRYKGDLGDRVKH 128 Query: 153 HLEIVNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRM 206 L+ L W + K + LSGG +QR+ ARA AT +LL+DEP S+LDP+ Sbjct: 129 ALQGAAL--WDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATR 186 Query: 207 RLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIA-----IMEGGR---IIQCGTPQEII 258 R+++ ++ L++ TI V+H++ +A R+ + A I +G R +++ G +I Sbjct: 187 RVEELMVELKKDY--TIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIF 244 Query: 259 LHPANCYVSEFIQ 271 +P S++I Sbjct: 245 QNPREQLTSDYIS 257 >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 274 Score = 95.4 bits (237), Expect = 2e-20 Identities = 73/223 (32%), Positives = 113/223 (50%), Gaps = 16/223 (7%) Query: 44 AVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADAN 103 A+ NL +KKGE + ++G +G+GKSTL +NGL +G+VLV G D + Sbjct: 17 ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLV---SGI---DTGDFS 70 Query: 104 VLRKLRMHTVSMVFQ----QFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNL 159 L+ +R V +VFQ QF RTV ++ G E L +P +E + RV L + L Sbjct: 71 KLQGIR-KLVGIVFQNPETQFV---GRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGL 126 Query: 160 TKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKL 219 K+ LSGG Q V A L+ DE S LDP + + + + L K Sbjct: 127 EKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEK- 185 Query: 220 KKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPA 262 KTIV+++H++ E +RI +M+ G+I+ G P+ ++ + Sbjct: 186 GKTIVYITHNLEE-LHDADRIIVMDRGKIVLEGEPENVLSDVS 227 >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional. Length = 261 Score = 95.5 bits (237), Expect = 2e-20 Identities = 71/235 (30%), Positives = 124/235 (52%), Gaps = 18/235 (7%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANV-LRK 107 ++E+ + ++ ++G SG GKST L+ +N + + EV V+ F N + V L + Sbjct: 27 SMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNEL-ESEVRVEGRVEFFNQNIYERRVNLNR 85 Query: 108 LRMHTVSMVFQQFALLPWRTVARNVELGLEFLDI-PDVERKSRVAEHLEIVNLTKWADCK 166 LR VSMV + L P +V NV G++ + P +E V L+ +L W + K Sbjct: 86 LRRQ-VSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADL--WDEIK 141 Query: 167 INM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLK 220 + LSGG +QR+ ARA A +LLMDEP LDP+ M+++ + +L+ + + Sbjct: 142 HKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSE 201 Query: 221 KTIVFVSHDINEAFRLGNRIAIMEG-----GRIIQCGTPQEIILHPANCYVSEFI 270 T+V VSH++++ RL + A +G G++++ G ++I P + E++ Sbjct: 202 LTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKKIFNSPHDSRTREYV 256 >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional. Length = 259 Score = 95.1 bits (236), Expect = 3e-20 Identities = 70/254 (27%), Positives = 129/254 (50%), Gaps = 18/254 (7%) Query: 29 SIKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLV 88 +IK D Y A+ ++++ + ++ ++G SG GKST ++++N ++ + G V V Sbjct: 7 AIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISEL-EGPVKV 65 Query: 89 DTDKGFV--NPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFL-DIPDVE 145 + F N Y N+ R R + MVFQ+ P ++ NV G+ +P + Sbjct: 66 EGVVDFFGQNIYDPRININRLRRQ--IGMVFQRPNPFPM-SIYENVAYGVRISAKLPQAD 122 Query: 146 RKSRVAEHLEIVNLTKWADCKINM----LSGGMKQRVGFARAFATGAPILLMDEPFSSLD 201 V L+ L + K+N LSGG +QR+ ARA A +LLMDEP S+LD Sbjct: 123 LDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALD 182 Query: 202 PLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEG-----GRIIQCGTPQE 256 P+ M++++ + +L+ +L TI V+H++ +A R+ + A G++++ G + Sbjct: 183 PIATMKVEELIHSLRSEL--TIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQ 240 Query: 257 IILHPANCYVSEFI 270 I +P + +++ Sbjct: 241 IFSNPLDSRTRDYV 254 >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 282 Score = 94.9 bits (236), Expect = 3e-20 Identities = 70/262 (26%), Positives = 120/262 (45%), Gaps = 37/262 (14%) Query: 1 MNDCAVKFRDVDIVFGETSNKIRKRSRYSIKKHDKVSEYGMVSAVIKANLEVKKGEILVL 60 M D V+F+ V + ++ A+ + + +G L Sbjct: 1 MKDNIVEFKHVSFTYPDSK----------------------KPALNDISFSIPRGSWTAL 38 Query: 61 MGLSGAGKSTLLRSING-LAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMHTVSMVFQ- 118 +G +G+GKST+ + ING L P + D + A + +R V +VFQ Sbjct: 39 IGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLT-----AKTVWDIR-EKVGIVFQN 92 Query: 119 ---QFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKINMLSGGMK 175 QF TV +V GLE +P E V + L V + + D + LSGG K Sbjct: 93 PDNQFV---GATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQK 149 Query: 176 QRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSHDINEAFR 235 QRV A A I+++DE S LDP + ++ + L++K T++ ++HDI+EA Sbjct: 150 QRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEA-N 208 Query: 236 LGNRIAIMEGGRIIQCGTPQEI 257 + +++ +++ G+++ G+P EI Sbjct: 209 MADQVLVLDDGKLLAQGSPVEI 230 >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional. Length = 271 Score = 94.5 bits (235), Expect = 4e-20 Identities = 69/245 (28%), Positives = 127/245 (51%), Gaps = 25/245 (10%) Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSIN---GLAPVVR--GEVLVDTDKG 93 YG A+ NL++ + E+ ++G SG GKST ++++N L P V+ G++L Sbjct: 34 YGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNI 93 Query: 94 FVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEH 153 F Y+ + +LR + V MVFQ+ P +++ NV G + I D + + E Sbjct: 94 FDKSYSVE-----ELRTN-VGMVFQKPNPFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEK 146 Query: 154 LEIVNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMR 207 + W + K + LSGG +QR+ AR A ++LMDEP S+LDP+ ++ Sbjct: 147 -SLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLK 205 Query: 208 LQDELLALQRKLKK--TIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCY 265 +++ L ++LKK +I+ V+H++ +A R+ ++ A G + + +I +P++ Sbjct: 206 VEE----LVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSNPSDKR 261 Query: 266 VSEFI 270 ++I Sbjct: 262 TEDYI 266 >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 277 Score = 94.1 bits (234), Expect = 5e-20 Identities = 67/214 (31%), Positives = 104/214 (48%), Gaps = 18/214 (8%) Query: 53 KKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMHT 112 + I V+ G +GAGKSTL R NG+ G VL+ + N+ R++R Sbjct: 29 RNSRIAVI-GPNGAGKSTLFRHFNGILKPTSGSVLIRGEP------ITKENI-REVR-KF 79 Query: 113 VSMVFQQ-----FALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKI 167 V +VFQ F+ TV +++ G L + + RV+ L ++ L + D Sbjct: 80 VGLVFQNPDDQIFS----PTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP 135 Query: 168 NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVS 227 + LSGG K+RV A A +L++DEP + LDP L D L L T++F + Sbjct: 136 HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFST 195 Query: 228 HDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHP 261 H ++ + + I +M+ GRI+ GT +EI L P Sbjct: 196 HQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQP 229 >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 Score = 93.7 bits (233), Expect = 6e-20 Identities = 73/215 (33%), Positives = 104/215 (48%), Gaps = 27/215 (12%) Query: 55 GEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVL-RKLRMHTV 113 G + L+G +G+GKSTLLR + G G V + D + L R+ R V Sbjct: 27 GSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLA---------GVDLHGLSRRARARRV 77 Query: 114 SMVFQQFALLPWRTVARNVELG------LEFLDIP-DVERKSRVAEHLEIVNLTKWADCK 166 ++V Q TV V LG L D P D V L L+ AD Sbjct: 78 ALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAV---VDRALARTELSHLADRD 134 Query: 167 INMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKK---TI 223 ++ LSGG +QRV ARA A +LL+DEP + LD +R Q E LAL R+L T+ Sbjct: 135 MSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLD----VRAQLETLALVRELAATGVTV 190 Query: 224 VFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEII 258 V HD+N A + + +++GGR++ G P+E++ Sbjct: 191 VAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL 225 >gnl|CDD|182443 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional. Length = 254 Score = 93.6 bits (233), Expect = 6e-20 Identities = 64/224 (28%), Positives = 105/224 (46%), Gaps = 21/224 (9%) Query: 48 ANLEVKKGEILVLMGLSGAGKS-TLLRSINGLAPVVR---GEVLVDTDKGFVNPYAADAN 103 +L +++G +L L+G SG+GKS T ++ L VR G VL+D P A A Sbjct: 22 VSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGK-----PVAPCA- 75 Query: 104 VLRKLRMHTVSMVFQ--QFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLT- 160 LR ++ + Q + A P T+ + L P + + LE V L Sbjct: 76 ----LRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDA--TLTAALEAVGLEN 129 Query: 161 --KWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRK 218 + +SGGM QR+ A A AP ++ DEP + LD + + R+ D L ++ +K Sbjct: 130 AARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQK 189 Query: 219 LKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPA 262 ++ V+HD+ RL + +A+M GRI++ G + + P Sbjct: 190 RALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPK 233 >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional. Length = 269 Score = 93.7 bits (233), Expect = 6e-20 Identities = 70/224 (31%), Positives = 112/224 (50%), Gaps = 43/224 (19%) Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVV-----RGEVLVDTDKG 93 YG AV ++ +G++ L+G SG GKST+LRS+N + ++ +G VL D Sbjct: 23 YGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDG--- 79 Query: 94 FVNPYAADAN---VLRKLRMHTVSMVFQQFALLPWRTVARNVELGLE---FLDIPD--VE 145 + Y + V R+ + MVFQQ P +++ N+ G + D VE Sbjct: 80 -TDLYDPRVDPVEVRRR-----IGMVFQQPNPFP-KSIYENIAFGARINGYTGDMDELVE 132 Query: 146 RKSRVAEHLEIVNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSS 199 R R A W +CK + LSGG +QR+ AR A ++LMDEP S+ Sbjct: 133 RSLRKA--------AVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSA 184 Query: 200 LDPLIRMRLQDELLALQRKLKK--TIVFVSHDINEAFRLGNRIA 241 LDP+ +++++ + +LKK TIV V+H++ +A R+ + A Sbjct: 185 LDPISTLKIEETM----HELKKNFTIVIVTHNMQQAVRVSDMTA 224 >gnl|CDD|184581 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional. Length = 267 Score = 93.3 bits (232), Expect = 8e-20 Identities = 73/240 (30%), Positives = 123/240 (51%), Gaps = 32/240 (13%) Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPV-----VRGEVLVDTDKG 93 YG A+ +L++ + + +G SG GKST LR +N + V G++ +D + Sbjct: 29 YGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGE-- 86 Query: 94 FVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRV-AE 152 + Y +V+ +LR V MVFQ+ P +++ NV G P + +R AE Sbjct: 87 --DIYDPRLDVV-ELRAR-VGMVFQKPNPFP-KSIYENVAYG------PRIHGLARSKAE 135 Query: 153 HLEIV--NLTK---WADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLD 201 EIV +L K W + K + LSGG +QR+ ARA A ++LMDEP S+LD Sbjct: 136 LDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALD 195 Query: 202 PLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHP 261 P+ ++++ + L++ TIV V+H + +A R+ R A G +++ G +++ +P Sbjct: 196 PIATAKVEELIDELRQNY--TIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMFTNP 253 >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional. Length = 329 Score = 93.3 bits (231), Expect = 1e-19 Identities = 71/234 (30%), Positives = 120/234 (51%), Gaps = 23/234 (9%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRK- 107 NL++K+ ++ +G SG GKST LR++N L ++ G + +G + Y N K Sbjct: 102 NLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGT----SHEGEI--YFLGTNTRSKK 155 Query: 108 ---LRMHT-VSMVFQQFALLPWR-TVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKW 162 L + T + MVFQ+ P+ ++ NV G I D + ++ E + + W Sbjct: 156 ISSLELRTRIGMVFQKPT--PFEMSIFDNVAYGPRNNGINDRKILEKIVEK-SLKSAALW 212 Query: 163 ADCKI------NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQ 216 + K N LSGG +QR+ ARA A +LLMDEP S+LDP+ ++++ +L L+ Sbjct: 213 DEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELK 272 Query: 217 RKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFI 270 +K +I+ V+H + +A R+ + G I + G + I +HP N ++I Sbjct: 273 KKY--SIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHPKNKRTKDYI 324 >gnl|CDD|184194 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 290 Score = 93.2 bits (232), Expect = 1e-19 Identities = 64/217 (29%), Positives = 103/217 (47%), Gaps = 8/217 (3%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108 N+ + G + ++G +G+GKSTLL+ +NGL G V + LRK Sbjct: 27 NVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRK- 85 Query: 109 RMHTVSMVFQQF--ALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCK 166 V +VFQ F L TV +++ G + + + K + E +E+V L + + Sbjct: 86 ---KVGIVFQ-FPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLAR 141 Query: 167 INM-LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVF 225 LSGG +RV A A +L++DEP + LDP R + + L ++ T V Sbjct: 142 SPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVL 201 Query: 226 VSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPA 262 V+H + +A R ++I +M G + GTP+EI P Sbjct: 202 VTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADPD 238 >gnl|CDD|163576 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. Length = 236 Score = 92.4 bits (230), Expect = 1e-19 Identities = 65/219 (29%), Positives = 106/219 (48%), Gaps = 10/219 (4%) Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPY 98 YG A+ + V+ GE + L+G +GAGKSTL + L G++ V P Sbjct: 11 YGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPR 70 Query: 99 AADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVN 158 AA L +L +VFQQ L +V +N+ + E + R+A L + Sbjct: 71 AA----LARL-----GVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLG 121 Query: 159 LTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRK 218 L + AD K+ L+GG ++RV ARA +LL+DEP LDP R + + AL R Sbjct: 122 LAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRD 181 Query: 219 LKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257 ++++ +H ++E +R+ ++ GR++ G E+ Sbjct: 182 QGLSVLWATHLVDEI-EADDRLVVLHRGRVLADGAAAEL 219 >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional. Length = 254 Score = 92.0 bits (228), Expect = 2e-19 Identities = 67/245 (27%), Positives = 120/245 (48%), Gaps = 25/245 (10%) Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFV--- 95 Y A+ N+++ K I L+G SG GKST LR++N + +V G + + + Sbjct: 17 YTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEG---IKIEGNVIYEG 73 Query: 96 -NPYAADANVLRKLRMHTVSMVFQQ---FALLPWRTVARNVELGLEFLDIPDVERKSRVA 151 N Y+ + ++L R + MVFQ F + ++ N+ G + D ++ + Sbjct: 74 KNIYSNNFDILELRR--KIGMVFQTPNPFLM----SIYDNISYGPKIHGTKDKKKLDEIV 127 Query: 152 EHLEIVNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIR 205 E + W + K + LSGG +QR+ AR A ++LMDEP S+LDP+ Sbjct: 128 EQ-SLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPIST 186 Query: 206 MRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCY 265 ++++ ++ L+ TI+ V+H++ +A R+ +R A G I + + E+ +P N Sbjct: 187 GKIEELIINLKESY--TIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFNPKNTK 244 Query: 266 VSEFI 270 E+I Sbjct: 245 TEEYI 249 >gnl|CDD|183084 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional. Length = 327 Score = 91.9 bits (229), Expect = 2e-19 Identities = 66/245 (26%), Positives = 121/245 (49%), Gaps = 14/245 (5%) Query: 30 IKKHDKVSE-----YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRG 84 +KKH V +V A+ + +++G+ L ++G SG GKSTL R + + G Sbjct: 11 LKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGG 70 Query: 85 EVLVDTDKGFVNPYAADANVLRKLRMHTVSMVFQQ-FALL-PWRTVARNVELGLEF-LDI 141 E+ A +KL + +VFQ + L P + V + +E L + Sbjct: 71 ELYYQGQDLLKADPEA-----QKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSL 125 Query: 142 PDVERKSRVAEHLEIVNL-TKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSL 200 ER+ + + V L + D +M SGG +QR+ ARA +++ DEP S+L Sbjct: 126 SAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSAL 185 Query: 201 DPLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILH 260 D ++ ++ + ++ LQ++L + VF+SHD++ + + + +M GR ++ GT ++I + Sbjct: 186 DVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNN 245 Query: 261 PANCY 265 P + Y Sbjct: 246 PRHPY 250 >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional. Length = 253 Score = 91.4 bits (227), Expect = 3e-19 Identities = 67/234 (28%), Positives = 113/234 (48%), Gaps = 21/234 (8%) Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLR---SINGLAPVVR--GEVLVDTDKG 93 YG A+ + + K + L+G SG GKSTLLR +N L P R G++L + + Sbjct: 16 YGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGEN- 74 Query: 94 FVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEH 153 + AD LR+ + MVFQ+ P +++ NV G + + + E Sbjct: 75 -IMDSGADVVALRR----KIGMVFQRPNPFP-KSIYENVAYGPRIHGEKNKKTLDTIVEK 128 Query: 154 LEIVNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMR 207 + W + K + LSGG +QR+ AR A ++LMDEP S+LDP+ + Sbjct: 129 -SLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAK 187 Query: 208 LQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHP 261 ++D L K + T++ V+H++ +A R+ + M G++I+ +I +P Sbjct: 188 IED--LIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFENP 239 >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 277 Score = 91.3 bits (226), Expect = 4e-19 Identities = 75/230 (32%), Positives = 117/230 (50%), Gaps = 19/230 (8%) Query: 32 KHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTD 91 K++K S+ ++ V + + KGE + ++G +G+GKST R I+GL G+V +D + Sbjct: 13 KYEKESDVNQLNGV---SFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGE 69 Query: 92 KGFVNPYAADANVLRKLRMHTVSMVFQ----QFALLPWRTVARNVELGLEFLDIPDVERK 147 A + LR + MVFQ QF TV +V G+E IP E Sbjct: 70 L-------LTAENVWNLR-RKIGMVFQNPDNQFV---GATVEDDVAFGMENQGIPREEMI 118 Query: 148 SRVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMR 207 RV E L VN+ + + LSGG KQRV A A I+++DE S LDP R Sbjct: 119 KRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQE 178 Query: 208 LQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257 + + ++ K + T++ ++HD++EA +RI +M+ G II+ P E+ Sbjct: 179 IMRVIHEIKEKYQLTVLSITHDLDEAAS-SDRILVMKAGEIIKEAAPSEL 227 >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 Score = 91.0 bits (226), Expect = 4e-19 Identities = 67/241 (27%), Positives = 111/241 (46%), Gaps = 35/241 (14%) Query: 29 SIKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLV 88 SI+ YG +A+ + + E +KG I+ +G +GAGKST ++ I G P G V V Sbjct: 2 SIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQV 61 Query: 89 DTDKGFVNPYAADANVLRKLRMHT---VSMVFQQFALLPWRTVARNVELGLEFL----DI 141 + NP N + L H + M +++ L+F+ + Sbjct: 62 CGEDVLQNPKEVQRN-IGYLPEHNPLYLDMYVREY---------------LQFIAGIYGM 105 Query: 142 PDVERKSRVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLD 201 K RV E +E+V L KI LS G +QRVG A+A +L++DEP + LD Sbjct: 106 KGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLD 165 Query: 202 PLIRMRLQDELLALQRKLK-----KTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQE 256 P ++L+ ++ +K KTI+ +H + E + +R+ I+ G+I+ E Sbjct: 166 P-------NQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDE 218 Query: 257 I 257 + Sbjct: 219 L 219 >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 289 Score = 90.8 bits (225), Expect = 4e-19 Identities = 64/222 (28%), Positives = 115/222 (51%), Gaps = 17/222 (7%) Query: 44 AVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADAN 103 A+ +L KK ++ ++G +G+GKST+++ NGL ++ +T + V YA AN Sbjct: 26 ALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGL-------IISETGQTIVGDYAIPAN 78 Query: 104 V-----LRKLRMHTVSMVFQ--QFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEI 156 + +++LR + +VFQ ++ L T+ +++ G L E +V E L++ Sbjct: 79 LKKIKEVKRLR-KEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNLGENKQEAYKKVPELLKL 136 Query: 157 VNLTK-WADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLAL 215 V L + + LSGG K+RV A A L++DEP LDP + L Sbjct: 137 VQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERL 196 Query: 216 QRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257 ++ KK I+ V+H++++ R+ + + +M G++I G+P EI Sbjct: 197 NKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEI 238 >gnl|CDD|184126 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional. Length = 207 Score = 90.7 bits (226), Expect = 5e-19 Identities = 57/174 (32%), Positives = 77/174 (44%), Gaps = 25/174 (14%) Query: 45 VIKANL--EVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADA 102 V+ + L + GE LVL G +G+GK+TLLR I GL P G + +D A Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAE-- 73 Query: 103 NVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKW 162 H + + A+ P TVA N+E FL + +A LE V L Sbjct: 74 ------ACHYLG---HRNAMKPALTVAENLEFWAAFLG----GEELDIAAALEAVGLAPL 120 Query: 163 ADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDP--------LIRMRL 208 A LS G K+RV AR + PI ++DEP ++LD LIR L Sbjct: 121 AHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHL 174 >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional. Length = 510 Score = 90.6 bits (225), Expect = 5e-19 Identities = 61/229 (26%), Positives = 110/229 (48%), Gaps = 21/229 (9%) Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPY 98 +G V A+ NL V GEI L+G +GAGKSTL++ ++G+ +G + ++ + + Sbjct: 15 FGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITIN-NINYNKLD 73 Query: 99 AADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGL----EFLDIPDV---ERKSRVA 151 A L + +++Q+ +++ TV N+ +G + + + E + R A Sbjct: 74 HKLAAQL------GIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAA 127 Query: 152 EHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDE 211 L V L D K+ LS KQ + A+ A +++MDEP SSL + D Sbjct: 128 MMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTN----KEVDY 183 Query: 212 LLALQRKLK---KTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257 L + +L+ IV++SH + E R+ +R +M+ G + G ++ Sbjct: 184 LFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV 232 Score = 54.4 bits (131), Expect = 4e-08 Identities = 56/254 (22%), Positives = 106/254 (41%), Gaps = 35/254 (13%) Query: 11 VDIVFGETSNKIRKRSRYSIKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKST 70 V + ET ++R + KK +S V +GEIL GL G+G++ Sbjct: 257 VSNLAHETVFEVRNVTSRDRKKVRDIS------------FSVCRGEILGFAGLVGSGRTE 304 Query: 71 LLRSINGLAPVVRGEVLVD-TDKGFVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVA 129 L+ + G+ GE+ ++ D +P A K M ++ + P ++A Sbjct: 305 LMNCLFGVDKRAGGEIRLNGKDISPRSPLDA-----VKKGMAYITESRRDNGFFPNFSIA 359 Query: 130 RNVEL----------GLEFLDIPDVERKSRVAEHLEIVNLTKWADCKINMLSGGMKQRVG 179 +N+ + G L E+++ + + + I LSGG +Q+V Sbjct: 360 QNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVL 419 Query: 180 FARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLK---KTIVFVSHDINEAFRL 236 ++ +++ DEP +D + + E+ + R+L K I+ VS ++ E + Sbjct: 420 ISKWLCCCPEVIIFDEPTRGID----VGAKAEIYKVMRQLADDGKVILMVSSELPEIITV 475 Query: 237 GNRIAIMEGGRIIQ 250 +RIA+ GR+ Q Sbjct: 476 CDRIAVFCEGRLTQ 489 >gnl|CDD|162807 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. Length = 253 Score = 89.1 bits (221), Expect = 1e-18 Identities = 66/232 (28%), Positives = 100/232 (43%), Gaps = 5/232 (2%) Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPY 98 YG + ++ GE+L ++G SG+GKSTLL + G G G Sbjct: 13 YGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELEL 72 Query: 99 AADANVLRKLRMHTVSMVFQQFALLPWR-TVARNVELGLEFLDIPDVER-KSRVAEH--L 154 + R+ M T Q R V+ +G + I R A H L Sbjct: 73 YQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWL 132 Query: 155 EIVNLTK-WADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELL 213 E V + D SGGM+QR+ AR T ++ MDEP LD ++ RL D L Sbjct: 133 EEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLR 192 Query: 214 ALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCY 265 L R L ++ V+HD+ A L R+ +M+ GR+++ G +++ P + Y Sbjct: 193 GLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDDPQHPY 244 >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 Score = 89.0 bits (221), Expect = 2e-18 Identities = 60/203 (29%), Positives = 95/203 (46%), Gaps = 4/203 (1%) Query: 43 SAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADA 102 + +L V GE + L G SGAGKSTLL+S+ G +LV + +V+ A Sbjct: 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 Query: 103 NVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTK- 161 + ++R T+ V Q ++P + V L +P ++R E L +N+ + Sbjct: 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPER 141 Query: 162 -WADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLK 220 W SGG +QRV AR F PILL+DEP +SLD R + EL+A + Sbjct: 142 LW-HLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVV-ELIAEAKARG 199 Query: 221 KTIVFVSHDINEAFRLGNRIAIM 243 ++ + HD + +R+ + Sbjct: 200 AALIGIFHDEEVRELVADRVMDV 222 >gnl|CDD|163250 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Length = 230 Score = 88.7 bits (221), Expect = 2e-18 Identities = 62/207 (29%), Positives = 98/207 (47%), Gaps = 13/207 (6%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD-TDKGFVNPYAADANVLRK 107 +LEV KGE+ ++G +G GK+TLL+++ GL PV G + +D D + + Sbjct: 20 SLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGED---ITKLPPHERA--R 74 Query: 108 LRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVN-LTKWADCK 166 + V + F L TV N+ GL L P RK E E+ L + + Sbjct: 75 AGIAYVPQGREIFPRL---TVEENLLTGLAAL--PRRSRK-IPDEIYELFPVLKEMLGRR 128 Query: 167 INMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFV 226 LSGG +Q++ ARA T +LL+DEP + P I + + L+ + I+ V Sbjct: 129 GGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLV 188 Query: 227 SHDINEAFRLGNRIAIMEGGRIIQCGT 253 ++ A L +R +ME GR++ G Sbjct: 189 EQYLDFARELADRYYVMERGRVVASGA 215 >gnl|CDD|184201 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 287 Score = 88.7 bits (220), Expect = 2e-18 Identities = 70/243 (28%), Positives = 121/243 (49%), Gaps = 20/243 (8%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGF-VNPYAADANVLRK 107 + E+++G + L+G +G+GKSTL++ N L G + + G+ + P + N L+K Sbjct: 27 SFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITI---AGYHITPETGNKN-LKK 82 Query: 108 LRMHTVSMVFQQF--ALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNL-TKWAD 164 LR VS+VFQ F A L TV ++VE G + + E K + + L+ V L Sbjct: 83 LR-KKVSLVFQ-FPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLIS 140 Query: 165 CKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIV 224 LSGG +RV A A IL +DEP + LDP R + Q+ T++ Sbjct: 141 KSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKA-GHTVI 199 Query: 225 FVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFIQKLN---PITALVA 281 V+H++++ + + ++E G++I+ +P+EI E+++K P T+ A Sbjct: 200 LVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSDK------EWLKKHYLDEPATSRFA 253 Query: 282 ADV 284 + + Sbjct: 254 SKL 256 >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. Length = 2272 Score = 88.5 bits (219), Expect = 2e-18 Identities = 71/240 (29%), Positives = 116/240 (48%), Gaps = 15/240 (6%) Query: 30 IKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD 89 +K K+ E AV + N+ + +I +G +GAGK+T L + GL P G VLV Sbjct: 931 VKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVG 990 Query: 90 TDKGFVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSR 149 + + +R+ ++ M Q L TVA ++ + E + Sbjct: 991 GKD-----IETNLDAVRQ----SLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLE 1041 Query: 150 VAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQ 209 + LE L + + LSGGM++++ A AF A ++++DEP S +DP R + Sbjct: 1042 MEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIW 1101 Query: 210 DELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEF 269 D L L+ + +TI+ +H ++EA LG+RIAI+ GR+ GTP L NC+ + F Sbjct: 1102 D--LLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTP----LFLKNCFGTGF 1155 Score = 78.9 bits (194), Expect = 2e-15 Identities = 60/221 (27%), Positives = 99/221 (44%), Gaps = 24/221 (10%) Query: 44 AVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADAN 103 AV + + V+ GE L+G++GAGK+T + + G V G DA Sbjct: 1954 AVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSG----------------DAT 1997 Query: 104 VLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFL-------DIPDVERKSRVAEHLEI 156 V K + +S V Q P ++ G E L +P E + ++ Sbjct: 1998 VAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQS 2057 Query: 157 VNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQ 216 + L+ +AD SGG K+++ A A P++L+DEP + +DP R L + ++++ Sbjct: 2058 LGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSII 2117 Query: 217 RKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257 R+ + +V SH + E L R+AIM G GT Q + Sbjct: 2118 RE-GRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHL 2157 >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional. Length = 258 Score = 88.1 bits (219), Expect = 3e-18 Identities = 66/240 (27%), Positives = 107/240 (44%), Gaps = 47/240 (19%) Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEV------------ 86 YG + ++ GE+L ++G SG+GK+TLL +++ GEV Sbjct: 16 YGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDL 75 Query: 87 ----------LVDTDKGFVNPYAADANVLRKLRMHTVSM---VFQQFALLPWRTVARNVE 133 L+ T+ GFV+ + D LRM VS + ++ + R Sbjct: 76 YALSEAERRRLLRTEWGFVHQHPRDG-----LRM-QVSAGGNIGERLMAVGARHYGDIRA 129 Query: 134 LGLEFLDIPDVE-RKSRVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILL 192 ++L+ VE +R+ D SGGM+QR+ AR T ++ Sbjct: 130 TAGDWLE--RVEIDAARI-------------DDLPTTFSGGMQQRLQIARNLVTHPRLVF 174 Query: 193 MDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCG 252 MDEP LD ++ RL D L L R+L +V V+HD+ A L +R+ +M+ GR+++ G Sbjct: 175 MDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESG 234 >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 280 Score = 87.5 bits (217), Expect = 4e-18 Identities = 66/220 (30%), Positives = 110/220 (50%), Gaps = 15/220 (6%) Query: 44 AVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADAN 103 A+ NL ++ G +G +G+GKST+++ +NGL +G V VD D Sbjct: 22 ALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 Query: 104 VLRKLRMHTVSMVFQQFA--LLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTK 161 +RK V +VF QF L TV ++V G + + E ++ E L +V +++ Sbjct: 82 QIRK----KVGLVF-QFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISE 136 Query: 162 -WADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLK 220 + LSGG +RV A A IL++DEP + LDP R EL+ L +KL Sbjct: 137 SLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGR----KELMTLFKKLH 192 Query: 221 K---TIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257 + TIV V+H +++ + + ++E G+++ G P++I Sbjct: 193 QSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 >gnl|CDD|139715 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 320 Score = 87.6 bits (217), Expect = 5e-18 Identities = 63/222 (28%), Positives = 104/222 (46%), Gaps = 15/222 (6%) Query: 53 KKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLV---------DTDKGFVNPYAADAN 103 +K +I ++G SG+GKSTL+ NGL G + V + + NPY+ Sbjct: 50 EKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIK 109 Query: 104 VLRKLRMHTVSMVFQ--QFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNL-T 160 ++LR VSMVFQ ++ L T+ +++ G L + E K +L + L Sbjct: 110 NFKELR-RRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD 167 Query: 161 KWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLK 220 + + LSGG K+RV A A IL+ DEP + LDP +L+ + Sbjct: 168 SYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGE-HEMMQLILDAKANN 226 Query: 221 KTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPA 262 KT+ ++H + + + + +M+ G+I++ GTP EI Sbjct: 227 KTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQH 268 >gnl|CDD|163239 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. Length = 694 Score = 87.2 bits (217), Expect = 6e-18 Identities = 73/228 (32%), Positives = 113/228 (49%), Gaps = 24/228 (10%) Query: 40 GMVSAVIKA-NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD-TDKGFVNP 97 G + + +L ++ GE + ++G G+GKSTLL+ + GL G VL+D D ++P Sbjct: 475 GQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDP 534 Query: 98 YAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIV 157 AD LR + V Q L + T+ N+ LG + D ++ R + +A E V Sbjct: 535 --AD------LR-RNIGYVPQDPRLF-YGTLRDNIALGAPYADDEEILRAAELAGVTEFV 584 Query: 158 NL-TKWADCKIN----MLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDEL 212 D +I LSGG +Q V ARA PILL+DEP S++D R ++ Sbjct: 585 RRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMD----NRSEERF 640 Query: 213 L-ALQRKL-KKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEII 258 L+R L KT+V V+H L +RI +M+ GRI+ G +++ Sbjct: 641 KDRLKRWLAGKTLVLVTHR-TSLLDLVDRIIVMDNGRIVADGPKDQVL 687 >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional. Length = 648 Score = 87.1 bits (216), Expect = 7e-18 Identities = 61/204 (29%), Positives = 104/204 (50%), Gaps = 12/204 (5%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108 +L++ GE++ ++G SG+GKSTL+ + L G V + DA+ L +L Sbjct: 28 SLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRV----AGQDVATLDADALAQL 83 Query: 109 RMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKIN 168 R +FQ++ LL T A+NVE+ + + +R R E L+ + L + + + Sbjct: 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPS 143 Query: 169 MLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKK---TIVF 225 LSGG +QRV ARA G ++L DEP +LD +E++A+ +L+ T++ Sbjct: 144 QLSGGQQQRVSIARALMNGGQVILADEPTGALDS----HSGEEVMAILHQLRDRGHTVII 199 Query: 226 VSHDINEAFRLGNRIAIMEGGRII 249 V+HD A + R+ + G I+ Sbjct: 200 VTHDPQVAAQ-AERVIEIRDGEIV 222 >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. Length = 571 Score = 86.7 bits (215), Expect = 8e-18 Identities = 72/223 (32%), Positives = 109/223 (48%), Gaps = 28/223 (12%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108 +L ++ GE + L+G SG+GKSTL+ I G++L+D AD L L Sbjct: 352 SLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHD------LADYT-LASL 404 Query: 109 RMHTVSMVFQQFALLPWRTVARNVELG-LEFLDIPDVERKSRVAEHLEIVN-LTKWADCK 166 R V++V Q L T+A N+ G E D ++ER A + V+ L D Sbjct: 405 RRQ-VALVSQDVVLFN-DTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTP 462 Query: 167 IN----MLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKT 222 I +LSGG +QR+ ARA APIL++DE S+LD +Q L L + +T Sbjct: 463 IGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQ--GRT 520 Query: 223 IVFVSHDINEAFRL-----GNRIAIMEGGRIIQCGTPQEIILH 260 + ++H RL +RI +M+ GRI++ GT E++ Sbjct: 521 TLVIAH------RLSTIEKADRIVVMDDGRIVERGTHNELLAR 557 >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional. Length = 305 Score = 86.4 bits (214), Expect = 9e-18 Identities = 81/289 (28%), Positives = 134/289 (46%), Gaps = 47/289 (16%) Query: 16 GETSNKIRKRSR-YSIKKHDKVS------EYGMVSAVIKANLEVKKGEILVLMGLSGAGK 68 GE+ + R Y K+S YG A+ ++++ + + L+G SG GK Sbjct: 25 GESDEQTRDEWTDYEFDGDAKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGK 84 Query: 69 STLLRSINGL-----APVVRGEVLVDTDKGFVNPYAADANV--LRKLRMHTVSMVFQQFA 121 ST LR +N + A + G V +D + Y N+ LRK V MVFQ Sbjct: 85 STFLRCLNRMNDRIKAARIDGSVELDGQ----DIYQDGVNLVELRK----RVGMVFQSPN 136 Query: 122 LLPWRTVARNVELG--------------LEFLDIPD-----VERKSRVAEHLEIVNLTKW 162 P +++ N+ G L D D VER R A + VN + Sbjct: 137 PFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVN-DRL 194 Query: 163 ADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKT 222 D + LSGG +QR+ AR A ++LMDEP S+LDP+ +++D + L + T Sbjct: 195 DDNALG-LSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEY--T 251 Query: 223 IVFVSHDINEAFRLGNRIAI-MEGGRIIQCGTPQEIILHPANCYVSEFI 270 +V V+H++ +A R+ ++ A+ + GG +++ +I +P + V ++I Sbjct: 252 VVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKIFENPESQRVEDYI 300 >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. Length = 708 Score = 85.6 bits (212), Expect = 2e-17 Identities = 69/258 (26%), Positives = 122/258 (47%), Gaps = 49/258 (18%) Query: 34 DKVS-EYGMVSAVIK-ANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLV--- 88 + VS YG S ++ +L +K ++G+SG+GKSTL + + G GE+L+ Sbjct: 477 NDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGF 536 Query: 89 ---DTDKG----FVN-----PYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGL 136 D D+ F+N PY ++L L + V Q + Sbjct: 537 SLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQD-----------EIWAAC 585 Query: 137 EFLDIPDVERKSRVAEHLEIVNLTKWADCKINM----LSGGMKQRVGFARAFATGAPILL 192 E +I D +I N+ +++ +SGG KQR+ ARA T + +L+ Sbjct: 586 EIAEIKD-----------DIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLI 634 Query: 193 MDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCG 252 +DE S+LD + ++ + LL LQ KTI+FV+H ++ A + ++I +++ G+II+ G Sbjct: 635 LDESTSNLDTITEKKIVNNLLNLQ---DKTIIFVAHRLSVAKQS-DKIIVLDHGKIIEQG 690 Query: 253 TPQEIILHPANCYVSEFI 270 + E++ N + + I Sbjct: 691 SHDELLD--RNGFYASLI 706 >gnl|CDD|162555 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. Length = 544 Score = 85.9 bits (213), Expect = 2e-17 Identities = 64/219 (29%), Positives = 104/219 (47%), Gaps = 18/219 (8%) Query: 48 ANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRK 107 + ++ GE L ++G SG+GKSTL R I G+ P G V +D A R+ Sbjct: 337 ISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDG--------ADLKQWDRE 388 Query: 108 LRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAE-HLEIVNLTKWADCK 166 + + Q L P TVA N+ E D + +++A H I+ L D Sbjct: 389 TFGKHIGYLPQDVELFP-GTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTV 447 Query: 167 IN----MLSGGMKQRVGFARAFATGAP-ILLMDEPFSSLDPLIRMRLQDELLALQRKLKK 221 I LSGG +QR+ ARA G P ++++DEP S+LD L + + AL+ + Sbjct: 448 IGPGGATLSGGQRQRIALARAL-YGDPKLVVLDEPNSNLDEEGEQALANAIKALKAR-GI 505 Query: 222 TIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILH 260 T+V ++H + ++I +++ GRI + G E++ Sbjct: 506 TVVVITHRPS-LLGCVDKILVLQDGRIARFGERDEVLAK 543 >gnl|CDD|184206 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 274 Score = 85.6 bits (212), Expect = 2e-17 Identities = 65/230 (28%), Positives = 109/230 (47%), Gaps = 31/230 (13%) Query: 44 AVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADAN 103 A+ +L + +G L+G +GAGKSTLL +NG+ RG V V + VN + Sbjct: 20 ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGRE--VNA--ENEK 75 Query: 104 VLRKLRMHTVSMVFQQ-----FALLPWRTVA---RNVELGLEFLDIPDVERKSRVAEHLE 155 +R V +VFQ F+ W VA N+ L + E + RV E L+ Sbjct: 76 WVRS----KVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKD-------EVERRVEEALK 124 Query: 156 IVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLAL 215 V + + D LS G K+RV A A ++++DEP + LDP R Q+ L+ + Sbjct: 125 AVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDP----RGQETLMEI 180 Query: 216 QRKLK---KTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPA 262 +L KT++ +HD++ A +++ +++ GR++ G ++ Sbjct: 181 LDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDK-SLLTDED 229 >gnl|CDD|162558 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. Length = 694 Score = 85.2 bits (211), Expect = 2e-17 Identities = 61/215 (28%), Positives = 108/215 (50%), Gaps = 17/215 (7%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108 NL++K GE + ++G SG+GKSTL + + L G+VLVD V+ AD LR+ Sbjct: 477 NLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDG----VDLAIADPAWLRR- 531 Query: 109 RMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLE-IVNLTKWADCKI 167 + +V Q+ L R++ N+ L V +++A + I L + + ++ Sbjct: 532 ---QMGVVLQENVLFS-RSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEV 587 Query: 168 N----MLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTI 223 LSGG +QR+ ARA IL+ DE S+LD + + + R +T+ Sbjct: 588 GEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICR--GRTV 645 Query: 224 VFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEII 258 + ++H ++ R +RI ++E G+I + G +E++ Sbjct: 646 IIIAHRLS-TVRACDRIIVLEKGQIAESGRHEELL 679 >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional. Length = 246 Score = 85.1 bits (210), Expect = 2e-17 Identities = 68/230 (29%), Positives = 116/230 (50%), Gaps = 16/230 (6%) Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLA-PVVRGEVLVDTDKGFVNP 97 YG A+ N+++++ +I L+G SG GKST LR N + + + + LV+ + V Sbjct: 12 YGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVK- 70 Query: 98 YAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELG--LEFLDIPDVERKSRVAEHLE 155 D LRK V MVFQQ + +++ N+ L + E ++ V + L+ Sbjct: 71 -NQDVVALRK----NVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQ 124 Query: 156 IVNLTKWADCKINM----LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDE 211 V L + K+ LSGG +QR+ ARA A +LL+DEP S+LDP+ +++ Sbjct: 125 KVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEEL 184 Query: 212 LLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHP 261 L L L +++ V+H++ + R+ + A G +I+ G +E +P Sbjct: 185 LKELSHNL--SMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENP 232 >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 Score = 85.1 bits (211), Expect = 3e-17 Identities = 73/227 (32%), Positives = 105/227 (46%), Gaps = 41/227 (18%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108 NL V+ GE + L+G SGAGKSTL + + G +L+D V+ D LR Sbjct: 360 NLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDG----VDLRQLDPAELR-- 413 Query: 109 RMHTVSMVFQQFALLPWR------TVARNVELGLEFLDIPDVERKSRVAEHLE-IVNLTK 161 + AL+P +V N+ G +VE +R A E I L + Sbjct: 414 ---------ARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPE 464 Query: 162 WADCKIN----MLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQR 217 D + LSGG +QR+ ARA APILL+DE S+LD +Q AL+ Sbjct: 465 GYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQ---QALET 521 Query: 218 KLK-KTIVFVSHDINEAFRL-----GNRIAIMEGGRIIQCGTPQEII 258 +K +T + ++H RL +RI +M+ GRI+ GT E+I Sbjct: 522 LMKGRTTLIIAH------RLATVLKADRIVVMDQGRIVAQGTHAELI 562 >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional. Length = 264 Score = 84.8 bits (210), Expect = 3e-17 Identities = 73/256 (28%), Positives = 119/256 (46%), Gaps = 40/256 (15%) Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLR---SINGLAPVVRGE-VLVDTDKGF 94 YG AV L++ K +I +G SG GKST+LR +N L P R E + K Sbjct: 20 YGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNL 79 Query: 95 VNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFL----DIPD-VERKSR 149 P V R+ + MVFQ+ P +++ N+ G D+ + VER R Sbjct: 80 YAPDVDPVEVRRR-----IGMVFQKPNPFP-KSIYDNIAYGARINGYKGDMDELVERSLR 133 Query: 150 VAEHLEIVNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPL 203 A W + K + LSGG +QR+ ARA A ++LMDEP S+LDP+ Sbjct: 134 QA--------ALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPI 185 Query: 204 IRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIM-----EG----GRIIQCGTP 254 +R+++ + L+ + TI+ V+H++ +A R+ + A EG G +++ Sbjct: 186 STLRIEELMHELKEQY--TIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRT 243 Query: 255 QEIILHPANCYVSEFI 270 ++I P +++ Sbjct: 244 EKIFNSPQQQATRDYV 259 >gnl|CDD|163051 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 529 Score = 84.7 bits (210), Expect = 3e-17 Identities = 65/192 (33%), Positives = 90/192 (46%), Gaps = 29/192 (15%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108 +L++ GE + ++G SG+GKSTLL + GL ++GEV +D + L+ Sbjct: 355 SLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLD---------GVSVSSLQDE 405 Query: 109 RMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKIN 168 +S VF Q A L TV N+ LG D D E + LE V L W + Sbjct: 406 LRRRIS-VFAQDAHLFDTTVRDNLRLGRP--DATDEE----LWAALERVGLADWLRSLPD 458 Query: 169 -----------MLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQR 217 LSGG +QR+ ARA APILL+DEP LD L ++LLA Sbjct: 459 GLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALS 518 Query: 218 KLKKTIVFVSHD 229 KT+V ++H Sbjct: 519 --GKTVVVITHH 528 >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional. Length = 623 Score = 84.9 bits (210), Expect = 3e-17 Identities = 71/228 (31%), Positives = 117/228 (51%), Gaps = 9/228 (3%) Query: 42 VSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAAD 101 V AV K + ++ GE L L+G SG+GKST R++ L GE++ + + Sbjct: 337 VHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS---- 392 Query: 102 ANVLRKLRMHTVSMVFQQ--FALLPWRTVARNVELGLEFLDIPDVER-KSRVAEHLEIVN 158 L+ LR + +FQ +L P +TV ++ L + + +RVA LE V Sbjct: 393 PGKLQALR-RDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVG 451 Query: 159 LT-KWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQR 217 L + A + SGG +QR+ ARA A +++ DE S+LD IR ++ + LL LQR Sbjct: 452 LLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQR 511 Query: 218 KLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCY 265 +F+SHD+ R+ +R+A+M G+I++ G + + +P + Y Sbjct: 512 DFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPY 559 Score = 79.1 bits (195), Expect = 1e-15 Identities = 60/263 (22%), Positives = 127/263 (48%), Gaps = 16/263 (6%) Query: 38 EYGMVSAVIKANLEVKKGEILVLMGLSGAGKS----TLLRSINGLAPVVRGE--VLVDTD 91 E ++AV + +++GE L ++G SG+GKS L+R + +V+ + +L Sbjct: 25 EQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRS 84 Query: 92 KGFVNPYAADANVLRKLRMHTVSMVFQQ--FALLPWRTVARNVELGLEFLDIPDVERKSR 149 + + A +R +R ++M+FQ+ +L P TV + + R+ Sbjct: 85 RQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEA 142 Query: 150 VAEHLEIVNLTKWADCKI------NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPL 203 + E +++ + + + + LSGGM+QRV A A + +L+ DEP ++LD Sbjct: 143 MVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVT 202 Query: 204 IRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPAN 263 I+ ++ + LQ+++ ++F++HD+ + +R+ +M G ++ G+ ++I P + Sbjct: 203 IQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIFHAPQH 262 Query: 264 CYVSEFIQKLNPITALVAADVMR 286 Y + + + A+ D R Sbjct: 263 PYTRALLAAVPQLGAMKGLDYPR 285 >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional. Length = 258 Score = 84.3 bits (208), Expect = 4e-17 Identities = 69/245 (28%), Positives = 118/245 (48%), Gaps = 26/245 (10%) Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVR-----GEVLVDTDKG 93 YG A+ ++++ K + L+G SG GKST +R +N + +++ G+V ++ + Sbjct: 22 YGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGE-- 79 Query: 94 FVNPYAADANV--LRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVA 151 + Y D +V LRK V MVFQ+ P ++ NV G + V Sbjct: 80 --DIYEPDVDVVELRK----NVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVE 132 Query: 152 EHLEIVNLTKWADCKINM------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIR 205 L L W + + LSGG +QR+ AR A I+L DEP S+LDP+ Sbjct: 133 NALRSAAL--WDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPIST 190 Query: 206 MRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCY 265 R++D ++ L++ TIV V+H++ +A R+ + G +I+ G ++I +P Sbjct: 191 ARIEDLIMNLKKDY--TIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHNPREKS 248 Query: 266 VSEFI 270 ++I Sbjct: 249 TEDYI 253 >gnl|CDD|162130 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein. Length = 617 Score = 83.9 bits (208), Expect = 5e-17 Identities = 75/278 (26%), Positives = 116/278 (41%), Gaps = 27/278 (9%) Query: 14 VFGETSNKIRKRSRYSIKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLR 73 VFG + + S + E + + K GE+L +MG SGAGK+TL+ Sbjct: 10 VFGRVAQDGSWKQLVSRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLM- 68 Query: 74 SINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMHTVSMVFQQFAL-LPWRTVARNV 132 N LA V +N DA M +S QQ L +P TV ++ Sbjct: 69 --NALAFRSPKGVKGSGSV-LLNGMPIDAK-----EMRAISAYVQQDDLFIPTLTVREHL 120 Query: 133 ELGLEFL---DIPDVERKSRVAEHLEIVNLTKWADCKINM------LSGGMKQRVGFARA 183 + E++ RV E L+ + L K A+ +I + LSGG ++R+ FA Sbjct: 121 MFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASE 180 Query: 184 FATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIM 243 T P+L DEP S LD + + L L +K K I + +E F L ++I +M Sbjct: 181 LLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILM 240 Query: 244 EGGRIIQCGTPQEI--------ILHPANCYVSEFIQKL 273 GR+ G+P + P N ++F ++ Sbjct: 241 AEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQV 278 >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 Score = 84.0 bits (208), Expect = 5e-17 Identities = 64/211 (30%), Positives = 102/211 (48%), Gaps = 17/211 (8%) Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPY 98 +G +AV +L V K + L+G +GAGKSTLL+ I G+ GE++ D Sbjct: 10 FGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHP------ 63 Query: 99 AADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVN 158 + +H + + + L T N+++ L +PD SR+ E L IV+ Sbjct: 64 ------WTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPD----SRIDEVLNIVD 113 Query: 159 LTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRK 218 LT K S GMKQR+G A A +L++DEP + LDP+ L+ EL+ + Sbjct: 114 LTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELR-ELIRSFPE 172 Query: 219 LKKTIVFVSHDINEAFRLGNRIAIMEGGRII 249 T++ SH ++E +L + I I+ G + Sbjct: 173 QGITVILSSHILSEVQQLADHIGIISEGVLG 203 >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. Length = 585 Score = 83.8 bits (207), Expect = 5e-17 Identities = 70/259 (27%), Positives = 122/259 (47%), Gaps = 40/259 (15%) Query: 5 AVKFRDVDIVFGETSNKIRKRSRYSIKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLS 64 AV+FR + F +S + S E K G+ + ++G + Sbjct: 334 AVEFRHITFEFANSSQGVFDVS-----------------------FEAKAGQTVAIVGPT 370 Query: 65 GAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMHTVSMVFQQFALLP 124 GAGK+TL+ + + G++L+D ++ LRK +++ VFQ L Sbjct: 371 GAGKTTLINLLQRVYDPTVGQILIDG----IDINTVTRESLRK----SIATVFQDAGLFN 422 Query: 125 WRTVARNVELGLEFLDIPDV-ERKSRVAEHLEIVNLTKWADCKI----NMLSGGMKQRVG 179 R++ N+ LG E +V E A H I+ + D + N LSGG +QR+ Sbjct: 423 -RSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLA 481 Query: 180 FARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNR 239 ARA APIL++DE S+LD R+++ + AL++ +T ++H ++ R + Sbjct: 482 IARAILKNAPILVLDEATSALDVETEARVKNAIDALRK--NRTTFIIAHRLS-TVRNADL 538 Query: 240 IAIMEGGRIIQCGTPQEII 258 + ++ GR+I+ G+ QE+I Sbjct: 539 VLFLDQGRLIEKGSFQELI 557 >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 286 Score = 83.7 bits (207), Expect = 6e-17 Identities = 62/223 (27%), Positives = 110/223 (49%), Gaps = 20/223 (8%) Query: 44 AVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADAN 103 A+ N E ++G+ ++G +G+GKSTL+++IN L G V VD + Sbjct: 22 AIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVD---DITITHKTKDK 78 Query: 104 VLRKLRMHTVSMVFQQF--ALLPWRTVARNVELGLEFLDIPDVERKSRVAEHL------- 154 +R +R + MVFQ F + L TV R + G + + E K+ L Sbjct: 79 YIRPVR-KRIGMVFQ-FPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSR 136 Query: 155 EIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLA 214 ++++ + + +SGG +++ A I+++DEP + LDP + ++ L + Sbjct: 137 DVMSQSPF------QMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKS 190 Query: 215 LQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257 LQ KTI+ VSHD+NE R + + +M+ G I+ +P+E+ Sbjct: 191 LQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKEL 233 >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional. Length = 233 Score = 83.7 bits (207), Expect = 7e-17 Identities = 62/199 (31%), Positives = 98/199 (49%), Gaps = 12/199 (6%) Query: 51 EVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRM 110 + +GE++ ++G SG+GKSTLL + GL G+V+ + ++ ++ A +LR Sbjct: 31 SIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQP--MSKLSSAAKA--ELRN 86 Query: 111 HTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKINML 170 + ++Q LLP T NV + L E SR E L V L A+ + + L Sbjct: 87 QKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSEL 146 Query: 171 SGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQD---ELLA-LQRKLKKTIVFV 226 SGG +QRV ARA ++L DEP +LD R D +LL L R + V Sbjct: 147 SGGERQRVAIARALVNNPRLVLADEPTGNLD----ARNADSIFQLLGELNRLQGTAFLVV 202 Query: 227 SHDINEAFRLGNRIAIMEG 245 +HD+ A R+ ++ + +G Sbjct: 203 THDLQLAKRMSRQLEMRDG 221 >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional. Length = 501 Score = 83.0 bits (206), Expect = 1e-16 Identities = 68/220 (30%), Positives = 111/220 (50%), Gaps = 27/220 (12%) Query: 42 VSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD-TDKGFVNPYAA 100 V A+ + + + G++ LMG +GAGKSTLL+ ++G G +L+D + F + AA Sbjct: 17 VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAA 76 Query: 101 DANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPD----VERK---SRVAEH 153 A V++++Q+ L+P TVA N+ LG +P V R+ E Sbjct: 77 LA--------AGVAIIYQELHLVPEMTVAENLYLG----QLPHKGGIVNRRLLNYEAREQ 124 Query: 154 LEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELL 213 LE + + D + LS G +Q V A+A A A ++ DEP SSL R ++L Sbjct: 125 LEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLS----AREIEQLF 180 Query: 214 ALQRKLK---KTIVFVSHDINEAFRLGNRIAIMEGGRIIQ 250 + R+L+ + I++VSH + E F L + I + + GR + Sbjct: 181 RVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVA 220 Score = 69.2 bits (170), Expect = 2e-12 Identities = 54/216 (25%), Positives = 96/216 (44%), Gaps = 28/216 (12%) Query: 48 ANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDK-GFVNPYAA-DANVL 105 + V+ GEI+ L GL GAG+S L++ + G G+V +D +P A A ++ Sbjct: 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIM 331 Query: 106 -----RKLRMHTVSMVFQQFALLPWRTVARNVELG-----LEFLDIPDVERKSRVAEHLE 155 RK ++P +VA N+ + L + + ++ A+ Sbjct: 332 LCPEDRK-----------AEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADR-F 379 Query: 156 IVNL---TKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDEL 212 I +L T + I LSGG +Q+ R + ++L+DEP +D + + + + Sbjct: 380 IRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVI 439 Query: 213 LALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRI 248 L + ++FVS D+ E + +RI +M GRI Sbjct: 440 YELAAQ-GVAVLFVSSDLPEVLGVADRIVVMREGRI 474 >gnl|CDD|172753 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional. Length = 274 Score = 82.4 bits (203), Expect = 1e-16 Identities = 74/215 (34%), Positives = 113/215 (52%), Gaps = 25/215 (11%) Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEV----LVDTDKGF 94 YG A++ +L++ +I+ +G SG GKSTLLR N + ++ G L+ D+ Sbjct: 30 YGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDR-- 87 Query: 95 VNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEF------LD--IPDVER 146 N Y + N + KLR V MVFQ+ P +++ N+ LD + D R Sbjct: 88 -NIYDSQINSV-KLR-RQVGMVFQRPNPFP-KSIYENIAFAPRANGYKGNLDELVEDSLR 143 Query: 147 KSRVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRM 206 ++ + E E+ + K K LSGG +QR+ ARA A +LLMDEP S+LDP I Sbjct: 144 RAAIWE--EVKDKLK---EKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDP-IST 197 Query: 207 RLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIA 241 R Q E L L+ K + TI+ V+H++ +A R+ + A Sbjct: 198 R-QVEELCLELKEQYTIIMVTHNMQQASRVADWTA 231 >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional. Length = 491 Score = 82.5 bits (204), Expect = 1e-16 Identities = 68/218 (31%), Positives = 113/218 (51%), Gaps = 25/218 (11%) Query: 42 VSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAAD 101 V A+ NL+V+ I LMG +GAGKSTLL+ + G+ G +L + ++ + + Sbjct: 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKE--ID-FKSS 67 Query: 102 ANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLE-----FLDIPDVERKSR-VAEHLE 155 L + +SMV Q+ L+ R+V N+ LG F+D + R ++ + + L+ Sbjct: 68 KEALE----NGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELD 123 Query: 156 I-VNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLA 214 I ++ K+ LS Q + A+AF+ A I++MDEP SSL + + L Sbjct: 124 IDIDPRA----KVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTE----KEVNHLFT 175 Query: 215 LQRKLKKT---IVFVSHDINEAFRLGNRIAIMEGGRII 249 + RKLK+ IV++SH + E F+L + I I+ G+ I Sbjct: 176 IIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWI 213 Score = 49.0 bits (117), Expect = 2e-06 Identities = 59/242 (24%), Positives = 100/242 (41%), Gaps = 42/242 (17%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108 + ++ KGEIL + GL GA ++ ++ ++ G+ G + + K N A +A Sbjct: 268 SFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLH-GKKINNHNANEA------ 320 Query: 109 RMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNL--------- 159 + FAL+ T R +LDI S + + V L Sbjct: 321 -------INHGFALV---TEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSD 370 Query: 160 TKWA-----------DCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRL 208 T+W +I LSGG +Q+V R T IL++DEP +D + + Sbjct: 371 TQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEI 430 Query: 209 QDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGR---IIQCG-TPQEIILHPANC 264 + L +K K I+ +S ++ E + +RI +M G I+ T Q IL A+ Sbjct: 431 YQLIAELAKK-DKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKTTTQNEILRLASL 489 Query: 265 YV 266 ++ Sbjct: 490 HL 491 >gnl|CDD|162243 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. Length = 198 Score = 81.6 bits (202), Expect = 3e-16 Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 15/149 (10%) Query: 55 GEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMHTVS 114 GE L + G +G GK+TLLR + GL GEV + R + Sbjct: 26 GEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWN---------GTALAEQRDEPHRNIL 76 Query: 115 MVFQQFALLPWRTVARNVELGLEFL-DIPDVERKSRVAEHLEIVNLTKWADCKINMLSGG 173 + L P + N L F I +++ + + L V LT + D LS G Sbjct: 77 YLGHLPGLKPELSALEN----LHFWAAIHGGAQRT-IEDALAAVGLTGFEDLPAAQLSAG 131 Query: 174 MKQRVGFARAFATGAPILLMDEPFSSLDP 202 ++R+ AR + + AP+ ++DEP ++LD Sbjct: 132 QQRRLALARLWLSRAPLWILDEPTTALDK 160 >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional. Length = 326 Score = 80.9 bits (200), Expect = 5e-16 Identities = 69/242 (28%), Positives = 117/242 (48%), Gaps = 18/242 (7%) Query: 44 AVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLA--PVVRGEVLVDT-DKGFVNPYAA 100 AV + + VK+GE++ ++G SG+GKS +I GL P G V+ + + + Sbjct: 22 AVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYP---GRVMAEKLEFNGQDLQRI 78 Query: 101 DANVLRKLRMHTVSMVFQQ--FALLPWRTVARNVELGLEFLDIPD----VERKSRVAEHL 154 R L V+M+FQ +L P TV + +E + + R+ R + L Sbjct: 79 SEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQI---MEAIKVHQGGNKKTRRQRAIDLL 135 Query: 155 EIVNLTKWA---DCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDE 211 V + A D + LSGGM QRV A A A +L+ DEP ++LD I+ ++ + Sbjct: 136 NQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIEL 195 Query: 212 LLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFIQ 271 LL LQ+K +V ++HD+ ++I +M G++++ G +I P + Y ++ Sbjct: 196 LLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAPRHPYTQALLR 255 Query: 272 KL 273 L Sbjct: 256 AL 257 >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional. Length = 241 Score = 80.7 bits (199), Expect = 5e-16 Identities = 58/211 (27%), Positives = 104/211 (49%), Gaps = 9/211 (4%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108 +L V GEI+ L+G +GAGK+T + G+ P G +++D + + P A A Sbjct: 23 SLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARA------ 76 Query: 109 RMHTVSMVFQQFALLPWRTVARNVELGLEFL-DIPDVERKSRVAEHLEIVNLTKWADCKI 167 + + Q+ ++ +V N+ L+ D+ +R+ R E +E ++ D Sbjct: 77 -RRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMG 135 Query: 168 NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVS 227 LSGG ++RV ARA A +L+DEPF+ +DP+ + ++ ++ R ++ Sbjct: 136 QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIK-RIIEHLRDSGLGVLITD 194 Query: 228 HDINEAFRLGNRIAIMEGGRIIQCGTPQEII 258 H++ E + R I+ G +I GTP EI+ Sbjct: 195 HNVRETLAVCERAYIVSQGHLIAHGTPTEIL 225 >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional. Length = 265 Score = 80.6 bits (199), Expect = 5e-16 Identities = 66/212 (31%), Positives = 104/212 (49%), Gaps = 20/212 (9%) Query: 55 GEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMHTVS 114 G++ L+G +G+GKSTLL+ + P GE+L+D P + ++ K V+ Sbjct: 37 GKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDA-----QPLESWSS---KAFARKVA 88 Query: 115 MVFQQFALLPWRTVARNVELGLE----FLDIPDVERKSRVAEHLEIVNLTKWADCKINML 170 + QQ TV V +G L + +V E + +V L A ++ L Sbjct: 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSL 148 Query: 171 SGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKK----TIVFV 226 SGG +QR A A + LL+DEP S+LD + Q ++LAL +L + T++ V Sbjct: 149 SGGERQRAWIAMLVAQDSRCLLLDEPTSALD----IAHQVDVLALVHRLSQERGLTVIAV 204 Query: 227 SHDINEAFRLGNRIAIMEGGRIIQCGTPQEII 258 HDIN A R + + + GG +I GTP E++ Sbjct: 205 LHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional. Length = 265 Score = 80.4 bits (198), Expect = 6e-16 Identities = 67/250 (26%), Positives = 115/250 (46%), Gaps = 21/250 (8%) Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPY 98 YG + +E+ G ++G +G GKSTLLR+++ L G V +D + + Y Sbjct: 17 YGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEH--IQHY 74 Query: 99 AADANVLRKLRMHTVSMVFQQFALLP-----WRTVARNVELGLEFLDIPDVERKSRVAEH 153 A+ V R++ + Q A P VAR E + V + Sbjct: 75 ASK-EVARRIGL------LAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKA 127 Query: 154 LEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELL 213 ++ +T AD ++ LSGG +QR A A I+L+DEP + LD ++ L + L Sbjct: 128 MQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLS 187 Query: 214 ALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFIQKL 273 L R+ T+ V HD+N+A R + + + G+I+ G P+EI+ +E I+++ Sbjct: 188 ELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV-------TAELIERI 240 Query: 274 NPITALVAAD 283 + ++ D Sbjct: 241 YGLRCMIIDD 250 >gnl|CDD|182515 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional. Length = 547 Score = 80.0 bits (198), Expect = 7e-16 Identities = 66/206 (32%), Positives = 95/206 (46%), Gaps = 23/206 (11%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108 NL +K+GE+L L+G +G+GKSTL + GL GE+L+D V A RKL Sbjct: 343 NLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKP--VT--AEQPEDYRKL 398 Query: 109 RMHTVSMVFQQF----ALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWAD 164 S VF F LL N L ++L+ + K + + I NL Sbjct: 399 ----FSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDG-RISNLK---- 449 Query: 165 CKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIV 224 LS G K+R+ A A ILL+DE + DP R LL L +++ KTI Sbjct: 450 -----LSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIF 504 Query: 225 FVSHDINEAFRLGNRIAIMEGGRIIQ 250 +SHD + F +R+ M G++ + Sbjct: 505 AISHD-DHYFIHADRLLEMRNGQLSE 529 >gnl|CDD|172763 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional. Length = 286 Score = 79.9 bits (197), Expect = 1e-15 Identities = 70/246 (28%), Positives = 118/246 (47%), Gaps = 27/246 (10%) Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVV-----RGEVLVDTDKG 93 YG AV K N ++ + ++G SG GKST LR+IN + ++ G ++ D + Sbjct: 49 YGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGED- 107 Query: 94 FVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPD-------VER 146 + D +LRK + MVFQ+ P +++ N+ G I D VE+ Sbjct: 108 -IYGKFTDEVLLRK----KIGMVFQKPNPFP-KSIFDNIAYGPRLHGINDKKQLEEIVEK 161 Query: 147 KSRVAEHLEIVN--LTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLI 204 R A + V+ L K A LSGG +QR+ AR A ILL+DEP S+LDP Sbjct: 162 SLRKAALWDEVSDRLDKNA----LGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKA 217 Query: 205 RMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANC 264 +++D + L+ TI+ V+H++ +A R+ + G +++ ++ +P + Sbjct: 218 TAKIEDLIQELRGSY--TIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTNPKDR 275 Query: 265 YVSEFI 270 ++I Sbjct: 276 MTEDYI 281 >gnl|CDD|185088 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional. Length = 529 Score = 78.6 bits (194), Expect = 2e-15 Identities = 66/237 (27%), Positives = 117/237 (49%), Gaps = 35/237 (14%) Query: 50 LEVKKGEILVLMGLSGAGKSTLLRSINGL---APVV--------RGEVLVDTDKGFVNPY 98 L+++ GE L L+G SG+GKS SI L PVV GE L+ Sbjct: 30 LQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLH--------- 80 Query: 99 AADANVLRKLRMHTVSMVFQQ--FALLPWRTVARNVELGLEFLDIPDVERK----SRVAE 152 A LR +R + ++M+FQ+ +L P T+ + + E L + R+ + Sbjct: 81 -ASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQL---YEVLSLHRGMRREAARGEILN 136 Query: 153 HLEIVNLTKWADCKIN----MLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRL 208 L+ V + + A ++ LSGG +QRV A A T +L+ DEP ++LD ++ ++ Sbjct: 137 CLDRVGIRQAAK-RLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQI 195 Query: 209 QDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCY 265 L LQ++L ++F++H+++ +L +R+A+M+ GR ++ + P + Y Sbjct: 196 LQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLFSAPTHPY 252 Score = 76.7 bits (189), Expect = 9e-15 Identities = 63/232 (27%), Positives = 112/232 (48%), Gaps = 27/232 (11%) Query: 53 KKGEILVLMGLSGAGKST----LLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108 + GE L L+G SG+GKST LLR IN +GE+ D + L + Sbjct: 310 RPGETLGLVGESGSGKSTTGLALLRLINS-----QGEIWFD---------GQPLHNLNRR 355 Query: 109 RM----HTVSMVFQ--QFALLPWRTVARNVELGLEF--LDIPDVERKSRVAEHLEIVNLT 160 ++ H + +VFQ +L P V + +E GL + +R+ +V +E V L Sbjct: 356 QLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLD 415 Query: 161 KWADCKI-NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKL 219 + SGG +QR+ ARA ++++DEP SSLD ++ ++ L +LQ+K Sbjct: 416 PETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKH 475 Query: 220 KKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFIQ 271 + +F+SHD++ L +++ ++ G +++ G + + P Y + + Sbjct: 476 QLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAAPQQEYTRQLLA 527 >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional. Length = 272 Score = 78.3 bits (193), Expect = 3e-15 Identities = 72/245 (29%), Positives = 107/245 (43%), Gaps = 41/245 (16%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAP--------VVRGEVLVDTDKGFVNPYAA 100 +L ++ G + L+G +GAGKSTLL+++ G V G+V ++ + P AA Sbjct: 21 SLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGE-----PLAA 75 Query: 101 -DANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEH------ 153 DA L +LR V Q A + AR + L + P R + Sbjct: 76 IDAPRLARLRA-----VLPQAAQPAFAFSAREIVLLGRY---PHARRAGALTHRDGEIAW 127 Query: 154 --LEIVNLTKWADCKINMLSGGMKQRVGFARAFA---------TGAPILLMDEPFSSLDP 202 L + T + LSGG RV FAR A LL+DEP ++LD Sbjct: 128 QALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDL 187 Query: 203 LIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIIL--H 260 + RL D + L R ++ + HD N A R +RIA++ G I+ G P +++ H Sbjct: 188 AHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVLTPAH 247 Query: 261 PANCY 265 A CY Sbjct: 248 IARCY 252 >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional. Length = 506 Score = 78.4 bits (194), Expect = 3e-15 Identities = 60/222 (27%), Positives = 106/222 (47%), Gaps = 19/222 (8%) Query: 36 VSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPV--VRGEVLVDTDKG 93 +G V A+ +L+V+ GEI+ L G +GAGKSTL++ ++G+ P GE++ + ++ Sbjct: 12 TKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEE- 70 Query: 94 FVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLD---IPDVERKSRV 150 A+ +R ++++ Q+ AL+ +V N+ LG E + R Sbjct: 71 ------LQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRA 124 Query: 151 AEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQD 210 + L + L + L G +Q V A+A A +L++DEP +SL Sbjct: 125 QKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTE----SETA 180 Query: 211 ELLALQRKLKK---TIVFVSHDINEAFRLGNRIAIMEGGRII 249 LL + R LK +++SH +NE + + I ++ GR I Sbjct: 181 VLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHI 222 Score = 42.6 bits (101), Expect = 1e-04 Identities = 52/233 (22%), Positives = 99/233 (42%), Gaps = 30/233 (12%) Query: 48 ANLEVKKGEILVLMGLSGAGKSTLLRSINGLAP-VVRGEVLVDTDKGFVNPYAADANVLR 106 + +++GEIL + GL GAG++ L++ + G P GE+ +D + Sbjct: 281 VSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKP-------VKIRNPQ 333 Query: 107 KLRMHTVSMVFQ---QFALLPWRTVARNVELG----LEFLDIPDVERKSRVAEHLEIVNL 159 + ++MV + + ++P V +N+ L D + + I L Sbjct: 334 QAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILE-SIQRL 392 Query: 160 ---TKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQ 216 T + I LSGG +Q+ A+ IL++DEP +D + + E+ L Sbjct: 393 KVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGID----VGAKYEIYKLI 448 Query: 217 RKLKK---TIVFVSHDINEAFRLGNRIAIMEGGRI----IQCGTPQEIILHPA 262 +L + I+ +S ++ E L +R+ +M G++ I QE ++ A Sbjct: 449 NQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNLTQEQVMEAA 501 >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional. Length = 267 Score = 78.3 bits (193), Expect = 3e-15 Identities = 58/224 (25%), Positives = 115/224 (51%), Gaps = 12/224 (5%) Query: 42 VSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAAD 101 V AV + +++G+ L ++G +G+GKSTL + + G+ GE+L+D Y+ Sbjct: 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS-- 83 Query: 102 ANVLRKLRMHTVSMVFQ--QFALLPWRTVARNVELGLEF-LDIPDVERKSRVAEHLEIVN 158 R + M+FQ +L P + +++ ++ L D+ +R+ ++ E L V Sbjct: 84 ------YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVG 137 Query: 159 L-TKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQR 217 L A +ML+ G KQR+G ARA +++ DE +SLD +R +L + +L LQ Sbjct: 138 LLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQE 197 Query: 218 KLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHP 261 K + ++V+ + + +++ +M G +++ G+ +++ P Sbjct: 198 KQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLASP 241 >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional. Length = 588 Score = 78.1 bits (193), Expect = 3e-15 Identities = 64/225 (28%), Positives = 108/225 (48%), Gaps = 25/225 (11%) Query: 43 SAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVV---RGEVLVD-TDKGFVNPY 98 V + E K G+ + ++G +GAGKSTL IN L V G +L+D TD V Sbjct: 349 QGVEDVSFEAKPGQTVAIVGPTGAGKSTL---INLLQRVFDPQSGRILIDGTDIRTVT-- 403 Query: 99 AADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLE-IV 157 LR +++VFQ A L R++ N+ +G ++ + A+ + I Sbjct: 404 ------RASLR-RNIAVVFQD-AGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIE 455 Query: 158 NLTKWADCKI----NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELL 213 D + LSGG +QR+ ARA PIL++DE S+LD +++ L Sbjct: 456 RKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALD 515 Query: 214 ALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEII 258 L K + T + ++H ++ R +RI + + GR+++ G+ E++ Sbjct: 516 EL-MKGRTTFI-IAHRLS-TVRNADRILVFDNGRVVESGSFDELV 557 >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional. Length = 331 Score = 77.8 bits (192), Expect = 4e-15 Identities = 68/236 (28%), Positives = 110/236 (46%), Gaps = 28/236 (11%) Query: 44 AVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVL---VDTDKGFVNPYAA 100 AV L + +GE L ++G SG GKST R+I GL GEV D Sbjct: 36 AVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGM------- 88 Query: 101 DANVLRKLRMHTVSMVFQQ--FALLPWRTVARNVELGLE--FLDIPDVERKSRVAEHLEI 156 + R +R + M+FQ +L P T+ + L + E K RV + Sbjct: 89 KDDEWRAVR-SDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLK 147 Query: 157 VNLTKWADCKINML-------SGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQ 209 V L N++ SGG QR+G ARA +++ DEP S+LD I+ ++ Sbjct: 148 VGLLP------NLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVV 201 Query: 210 DELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCY 265 + L LQR++ +++F++HD+ + +R+ +M G ++ GT E+ +P + Y Sbjct: 202 NLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHPY 257 >gnl|CDD|183003 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed. Length = 574 Score = 76.8 bits (190), Expect = 7e-15 Identities = 71/245 (28%), Positives = 116/245 (47%), Gaps = 50/245 (20%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108 +L++K GE + L+G +G GKSTLL+ + +GE+L++ + Y+ A L Sbjct: 360 SLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQP--IADYSEAA-----L 412 Query: 109 RMHTVSMVFQQFALLPWR------TVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKW 162 R Q +++ R T+ N+ L + D + E L+ V L K Sbjct: 413 R--------QAISVVSQRVHLFSATLRDNLLLAAP--NASD----EALIEVLQQVGLEKL 458 Query: 163 ADCK--INM--------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDEL 212 + +N LSGG ++R+G ARA AP+LL+DEP LD + ++ Sbjct: 459 LEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDA----ETERQI 514 Query: 213 LALQRKL--KKTIVFVSHDIN--EAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSE 268 L L + KT++ ++H + E F +RI +M+ G+II+ GT QE +L Y Sbjct: 515 LELLAEHAQNKTVLMITHRLTGLEQF---DRICVMDNGQIIEQGTHQE-LLAQQGRYYQ- 569 Query: 269 FIQKL 273 Q+L Sbjct: 570 LKQRL 574 >gnl|CDD|163508 TIGR03796, NHPM_micro_ABC1, NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. Length = 710 Score = 76.1 bits (188), Expect = 1e-14 Identities = 66/214 (30%), Positives = 104/214 (48%), Gaps = 21/214 (9%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108 +L ++ G+ + L+G SG+GKST+ + + GL GE+L D P AN Sbjct: 499 SLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLAN----- 553 Query: 109 RMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAE-HLEIVNLTKWADCKI 167 +V+MV Q L TV N+ L + D+ R + A H I + D ++ Sbjct: 554 ---SVAMVDQDIFLFE-GTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAEL 609 Query: 168 -----NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKT 222 N LSGG +QR+ ARA IL++DE S+LDP + D L R+ T Sbjct: 610 AEGGAN-LSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNL----RRRGCT 664 Query: 223 IVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQE 256 + V+H ++ R + I ++E G+++Q GT +E Sbjct: 665 CIIVAHRLS-TIRDCDEIIVLERGKVVQRGTHEE 697 >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 271 Score = 75.4 bits (185), Expect = 2e-14 Identities = 63/213 (29%), Positives = 102/213 (47%), Gaps = 14/213 (6%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108 NL+ + L+G +G GKSTL +++GL +G VL P L L Sbjct: 21 NLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGK-----PLDYSKRGLLAL 75 Query: 109 RMHTVSMVFQQFALLPWRT-VARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKI 167 R V+ VFQ + T + ++ L L +P+ E RV E L +V+ + I Sbjct: 76 RQQ-VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPI 134 Query: 168 NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKL---KKTIV 224 LS G K+RV A A A LL+DEP + LDP R +++A+ R++ ++ Sbjct: 135 QCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRT----QMIAIIRRIVAQGNHVI 190 Query: 225 FVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257 SHDI+ + + + + ++ G+I+ G P E+ Sbjct: 191 ISSHDIDLIYEISDAVYVLRQGQILTHGAPGEV 223 >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional. Length = 276 Score = 75.1 bits (184), Expect = 2e-14 Identities = 64/227 (28%), Positives = 113/227 (49%), Gaps = 24/227 (10%) Query: 60 LMGLSGAGKSTLLRSINGLAPVVRG-----EVLVDTDKGFVNPYAADANVLRKLRMHTVS 114 LMG +G+GK+T LR++N + V G +VL+ F +VL R V Sbjct: 52 LMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIF-----NYRDVLEFRR--RVG 104 Query: 115 MVFQQFALLPWRTVARNVELGLEFLD-IPDVERKSRVAEHLEIVNLTKWADCKINM---- 169 M+FQ+ P ++ NV G+ +P E + L V L W K + Sbjct: 105 MLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGL--WDAVKDRLSDSP 161 Query: 170 --LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVS 227 LSGG +Q + AR A +LL+DEP S+LDP ++++ + +L +L T++ V+ Sbjct: 162 FRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRL--TVIIVT 219 Query: 228 HDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFIQKLN 274 H++ +A R+ +R A+ GR+++ G +++ P + + ++ L+ Sbjct: 220 HNLAQAARISDRAALFFDGRLVEEGPTEQLFSSPKHAETARYVAGLS 266 >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional. Length = 237 Score = 74.9 bits (184), Expect = 3e-14 Identities = 64/218 (29%), Positives = 110/218 (50%), Gaps = 12/218 (5%) Query: 34 DKVS-EYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDK 92 DKVS YG + A+ + +L + +GEI+ L+G +GAGK+TLL ++ G G ++ D K Sbjct: 9 DKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFD-GK 67 Query: 93 GFVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDV-ERKSRVA 151 + A ++R+ V++V + + TV N+ +G F + ER V Sbjct: 68 DITD--WQTAKIMRE----AVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVY 121 Query: 152 EHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDE 211 E L + + +SGG +Q + RA + +LL+DEP L P+I ++ D Sbjct: 122 ELFP--RLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDT 179 Query: 212 LLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRII 249 + L R+ TI V + N+A +L +R ++E G ++ Sbjct: 180 IEQL-REQGMTIFLVEQNANQALKLADRGYVLENGHVV 216 >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional. Length = 222 Score = 74.1 bits (182), Expect = 4e-14 Identities = 65/208 (31%), Positives = 94/208 (45%), Gaps = 22/208 (10%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRK- 107 ++ GE+ L G SGAGKSTLL+ I G+ G++ D L+ Sbjct: 22 TFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFS---------GHDITRLKNR 72 Query: 108 ----LRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWA 163 LR + M+FQ LL RTV NV + L + + RV+ L+ V L A Sbjct: 73 EVPFLRRQ-IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKA 131 Query: 164 DCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIR---MRLQDELLALQRKLK 220 LSGG +QRVG ARA +LL DEP +LD + +RL +E ++ Sbjct: 132 KNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEF----NRVG 187 Query: 221 KTIVFVSHDINEAFRLGNRIAIMEGGRI 248 T++ +HDI R R+ + G + Sbjct: 188 VTVLMATHDIGLISRRSYRMLTLSDGHL 215 >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional. Length = 330 Score = 74.1 bits (182), Expect = 5e-14 Identities = 69/257 (26%), Positives = 118/257 (45%), Gaps = 35/257 (13%) Query: 40 GMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYA 99 G V AV + ++ + +GEI L+G SG+GKS + ++I G V + V D+ + Sbjct: 18 GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICG---VTKDNWRVTADRMRFD--- 71 Query: 100 ADANVL-------RKLRMHTVSMVFQ--QFALLPWRTVARNVELGLEFLDIPDVE----- 145 D ++L RKL H VSM+FQ Q L P V R + +IP Sbjct: 72 -DIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQL-----MQNIPGWTYKGRW 125 Query: 146 ------RKSRVAEHLEIVNLTKWADCKINM---LSGGMKQRVGFARAFATGAPILLMDEP 196 RK R E L V + D + L+ G Q+V A A A +L+ DEP Sbjct: 126 WQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEP 185 Query: 197 FSSLDPLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQE 256 ++++P + ++ L L + TI+ +SHD+ + ++I ++ G+ ++ +E Sbjct: 186 TNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKE 245 Query: 257 IILHPANCYVSEFIQKL 273 ++ P + Y I+ + Sbjct: 246 LVTTPHHPYTQALIRAI 262 >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional. Length = 330 Score = 74.0 bits (182), Expect = 6e-14 Identities = 64/239 (26%), Positives = 115/239 (48%), Gaps = 21/239 (8%) Query: 40 GMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAP---VVRGEVLVDTDKGFVN 96 G V+AV N ++ GE L ++G SG+GKS ++ GL + G + + Sbjct: 27 GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNL 86 Query: 97 PYAADANVLRKLRMHTVSMVFQQ--FALLPWRTVARNVELGLEFLDIPDVERKSRVAEH- 153 P L KLR +SM+FQ +L P+ V + +E L + K+ E Sbjct: 87 PEKE----LNKLRAEQISMIFQDPMTSLNPYMRVGEQL---MEVLMLHKGMSKAEAFEES 139 Query: 154 ---LEIVNLTKWADCKINM----LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRM 206 L+ V + + A ++ M SGGM+QRV A A +L+ DEP ++LD ++ Sbjct: 140 VRMLDAVKMPE-ARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQA 198 Query: 207 RLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCY 265 ++ L L+R+ I+ ++HD+ + +++ +M GR ++ G +++ P++ Y Sbjct: 199 QIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFYQPSHPY 257 >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional. Length = 582 Score = 73.5 bits (181), Expect = 7e-14 Identities = 65/226 (28%), Positives = 110/226 (48%), Gaps = 24/226 (10%) Query: 44 AVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADAN 103 A+ N ++ G+ + L+G SG+GKST+ + + GE+L+D + Y Sbjct: 358 ALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHD--LRDYT---- 411 Query: 104 VLRKLRMHTVSMVFQQFALLPWRTVARNVELGL-EFLDIPDVERKSRVAEHLEIVN-LTK 161 L LR V++V Q L T+A N+ E +E +R+A ++ +N + Sbjct: 412 -LASLRNQ-VALVSQNVHLFN-DTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDN 468 Query: 162 WADCKIN----MLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQR 217 D I +LSGG +QR+ ARA +PIL++DE S+LD +Q L LQ+ Sbjct: 469 GLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK 528 Query: 218 KLKKTIVFVSH---DINEAFRLGNRIAIMEGGRIIQCGTPQEIILH 260 +T + ++H I +A + I ++E G I++ GT E++ Sbjct: 529 --NRTSLVIAHRLSTIEKA----DEILVVEDGEIVERGTHAELLAQ 568 >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional. Length = 255 Score = 72.7 bits (179), Expect = 1e-13 Identities = 66/239 (27%), Positives = 109/239 (45%), Gaps = 32/239 (13%) Query: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD--------- 89 +G + AV NLEV++ EI+ L+G +GAGK+T+ + G G +L+ Sbjct: 15 FGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPG 74 Query: 90 ---TDKGFVNPYAADANVLRKLRMHTVS---MVFQQFALLPWRTVARNVELGLEFLDIPD 143 G V + +V R R TV +V Q + + + GL L P Sbjct: 75 HQIARMGVVRTFQ---HV-RLFREMTVIENLLVAQH------QQLKTGLFSGL--LKTPA 122 Query: 144 VERK-----SRVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFS 198 R R A LE V L + A+ + L+ G ++R+ AR T IL++DEP + Sbjct: 123 FRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAA 182 Query: 199 SLDPLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257 L+P L + + L+ + T++ + HD+ + +RI ++ G + GTP+EI Sbjct: 183 GLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEI 241 >gnl|CDD|179632 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional. Length = 248 Score = 72.3 bits (178), Expect = 2e-13 Identities = 69/225 (30%), Positives = 98/225 (43%), Gaps = 36/225 (16%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108 + EV+ GEIL L+G +GAGKSTLL + GL P G + A A L + Sbjct: 16 SAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQ----PLEAWSAAELARH 70 Query: 109 RMH-------TVSM-VFQQFAL-LPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNL 159 R + +M VFQ L P +T V L VAE L L Sbjct: 71 RAYLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALN-----------EVAEAL---GL 116 Query: 160 TKWADCKINMLSGGMKQRVGFARAFATGAP-------ILLMDEPFSSLDPLIRMRLQDEL 212 +N LSGG QRV A P +LL+DEP +SLD + + D L Sbjct: 117 DDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLD-VAQQAALDRL 175 Query: 213 LALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257 L+ + +V SHD+N R +R+ +++ G+++ G E+ Sbjct: 176 LSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEV 220 >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional. Length = 272 Score = 71.8 bits (176), Expect = 3e-13 Identities = 50/197 (25%), Positives = 96/197 (48%), Gaps = 24/197 (12%) Query: 43 SAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADA 102 +A+ A+ V G I L+G++G+GKSTL +++ G + G++ + Sbjct: 21 TALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISI-----------LGQ 69 Query: 103 NVLRKLRMHTVSMVFQQ------FALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEI 156 + L+ + V+ V Q F +L V + +L + V L Sbjct: 70 PTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALAR 129 Query: 157 VNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQ 216 V++ ++ +I LSGG K+RV ARA A ++L+DEPF+ +D ++ + +++L Sbjct: 130 VDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVD----VKTEARIISLL 185 Query: 217 RKLK---KTIVFVSHDI 230 R+L+ KT++ +H++ Sbjct: 186 RELRDEGKTMLVSTHNL 202 >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional. Length = 305 Score = 71.7 bits (176), Expect = 3e-13 Identities = 72/281 (25%), Positives = 123/281 (43%), Gaps = 43/281 (15%) Query: 44 AVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVL------VDTDKGFVNP 97 A+ ++E+ +GE + ++G +G+GK+T + +N L G + + K Sbjct: 22 ALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 Query: 98 YAADANVLRKLRMHT----------VSMVFQQFA--LLPWRTVARNVELGLEFLDIPDVE 145 + V++K R V +VF QFA L +T+ +++ G + + E Sbjct: 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVF-QFAEYQLFEQTIEKDIIFGPVSMGVSKEE 140 Query: 146 RKSRVAEHLEIVNL-TKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLI 204 K R A+++E+V L + LSGG K+RV A A L+ DEP + LDP Sbjct: 141 AKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDP-- 198 Query: 205 RMRLQDELLALQRKLK---KTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEII--- 258 + E+L + L KTI+ V+HD++ R + G+II+ G +I+ Sbjct: 199 --QGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDILSDN 256 Query: 259 -------LHPANCYVSEFIQKLNPITALVAADVMRVCSIDD 292 + P F+ KL DV +V SI++ Sbjct: 257 KFLIENNMEPPKLLN--FVNKLEKK----GIDVPKVTSIEE 291 >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional. Length = 569 Score = 70.9 bits (174), Expect = 4e-13 Identities = 63/223 (28%), Positives = 105/223 (47%), Gaps = 27/223 (12%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108 N +K G++L + G +G+GKSTLL I V G++ L KL Sbjct: 335 NFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIP------------LTKL 382 Query: 109 RMHTVS---MVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAE-HLEIVNLTKWAD 164 ++ + V Q L TVA N+ LG ++E +R+A H +I+ L + D Sbjct: 383 QLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYD 442 Query: 165 CKIN----MLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKL- 219 ++ MLSGG KQR+ ARA A IL++D+ S++D R + ++L R+ Sbjct: 443 TEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDG----RTEHQILHNLRQWG 498 Query: 220 -KKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHP 261 +T++ +H ++ A + I +M+ G I Q G ++ Sbjct: 499 EGRTVIISAHRLS-ALTEASEILVMQHGHIAQRGNHDQLAQQS 540 >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional. Length = 510 Score = 70.9 bits (174), Expect = 4e-13 Identities = 58/209 (27%), Positives = 92/209 (44%), Gaps = 13/209 (6%) Query: 45 VIKA-NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADAN 103 V+K + + GE+ L+G +GAGKSTL++ I G+ P G + + A A+ Sbjct: 26 VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIG-GNPCARLTPAKAH 84 Query: 104 VLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWA 163 L + +V Q+ L P +V N+ GL ++ + L + Sbjct: 85 QL------GIYLVPQEPLLFPNLSVKENILFGLP----KRQASMQKMKQLLAALGCQLDL 134 Query: 164 DCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTI 223 D L +Q V R + IL++DEP +SL P RL + L + I Sbjct: 135 DSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQ-GVGI 193 Query: 224 VFVSHDINEAFRLGNRIAIMEGGRIIQCG 252 VF+SH + E +L +RI++M G I G Sbjct: 194 VFISHKLPEIRQLADRISVMRDGTIALSG 222 Score = 52.0 bits (125), Expect = 2e-07 Identities = 54/217 (24%), Positives = 95/217 (43%), Gaps = 35/217 (16%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLR-K 107 +LEV+ GEIL L G+ GAG++ L ++ GL P G ++++ + N L Sbjct: 283 SLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLN---------GKEINALSTA 333 Query: 108 LRMHTVSMVF-----QQFAL-----LPWRTVARNV-ELGLEFLDIPDVERKSRVAE--HL 154 R+ +V+ Q L L W A G ++ R++ V E Sbjct: 334 QRLAR-GLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGF-WIK---PARENAVLERYRR 388 Query: 155 EIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLA 214 + A+ LSGG +Q+V A+ +L++DEP +D R +++ Sbjct: 389 ALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSAR----NDIYQ 444 Query: 215 LQRKLKK---TIVFVSHDINEAFRLGNRIAIMEGGRI 248 L R + ++F+S D+ E ++ +R+ +M G I Sbjct: 445 LIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEI 481 >gnl|CDD|183014 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed. Length = 588 Score = 68.7 bits (169), Expect = 2e-12 Identities = 61/219 (27%), Positives = 101/219 (46%), Gaps = 28/219 (12%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANV-LRK 107 N + G+ + L+G SGAGK++LL ++ G P +G + ++ + LR+ Sbjct: 370 NFTLPAGQRIALVGPSGAGKTSLLNALLGFLPY-QGSLKIN-------------GIELRE 415 Query: 108 LRM----HTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVN-LTKW 162 L +S V Q LP T+ NV LG +++ A E + L + Sbjct: 416 LDPESWRKHLSWVGQN-PQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQG 474 Query: 163 ADCKIN----MLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRK 218 D I LS G QR+ ARA +LL+DEP +SLD + L A R Sbjct: 475 LDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASR- 533 Query: 219 LKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257 ++T + V+H + + + ++I +M+ G+I+Q G E+ Sbjct: 534 -RQTTLMVTHQLEDLAQW-DQIWVMQDGQIVQQGDYAEL 570 >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional. Length = 214 Score = 67.2 bits (164), Expect = 5e-12 Identities = 46/155 (29%), Positives = 72/155 (46%), Gaps = 16/155 (10%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108 + V GE L++ G +GAGK+TLLR + GL V G++ +D R Sbjct: 31 DFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGK-----------TATRGD 79 Query: 109 RMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRV-AEHLEIVNLTKWADCKI 167 R ++ + L + N L FL R ++ L IV L + D + Sbjct: 80 RSRFMAYLGHLPGLKADLSTLEN----LHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLV 135 Query: 168 NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDP 202 LS G K+R+ AR + + AP+ L+DEP+++LD Sbjct: 136 RQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDL 170 >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). Length = 500 Score = 67.2 bits (164), Expect = 6e-12 Identities = 64/229 (27%), Positives = 111/229 (48%), Gaps = 31/229 (13%) Query: 36 VSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAP--VVRGEVLVDTDKG 93 V +G V A+ +LEV+ GE + L G +GAGKSTL++ ++G+ P GE+ Sbjct: 8 VKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSP- 66 Query: 94 FVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEF------LDIPDVERK 147 A+ +R + ++ Q+ L+P +VA N+ LG E + + + Sbjct: 67 ------LKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLR 120 Query: 148 SR--VAE-HLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLI 204 ++ + E L+ N+T+ + GG +Q V A+A A +L++DEP SSL Sbjct: 121 AKNLLRELQLDADNVTR----PVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSL---- 172 Query: 205 RMRLQDE-LLALQRKLKK---TIVFVSHDINEAFRLGNRIAIMEGGRII 249 + E LL + R LK V++SH +NE + + I ++ G+ + Sbjct: 173 -TEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHV 220 Score = 46.4 bits (110), Expect = 1e-05 Identities = 50/226 (22%), Positives = 99/226 (43%), Gaps = 24/226 (10%) Query: 52 VKKGEILVLMGLSGAGKSTLLRSINGLAP-VVRGEVLVDTDKGFVNPYAADANVLRKLRM 110 +++GEIL + GL GAG++ L++++ G P G V ++ N + +R Sbjct: 283 LRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKP------VDIRNPAQAIR- 335 Query: 111 HTVSMV---FQQFALLPWRTVARNVEL-------GLEFLDIPDVERKSRVAEHLEIVNLT 160 ++MV ++ ++P V +N+ L +D E + + + T Sbjct: 336 AGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRID-AAAELQIIGSAIQRLKVKT 394 Query: 161 KWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLK 220 I LSGG +Q+ A+ T +L++DEP +D + + + L ++ Sbjct: 395 ASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE-G 453 Query: 221 KTIVFVSHDINEAFRLGNRIAIMEGGRI----IQCGTPQEIILHPA 262 I+ VS ++ E L +R+ ++ G++ + QE +L A Sbjct: 454 VAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHALTQEQVLAAA 499 >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed. Length = 251 Score = 67.1 bits (164), Expect = 6e-12 Identities = 68/221 (30%), Positives = 100/221 (45%), Gaps = 31/221 (14%) Query: 50 LEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLR 109 LE+K G+IL L+G +GAGKSTL+R + GL G + + KLR Sbjct: 25 LELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRN----------------GKLR 68 Query: 110 MHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKINM 169 + V LP TV R FL + +K + L+ V D + Sbjct: 69 IGYVPQKLYLDTTLPL-TVNR-------FLRLRPGTKKEDILPALKRVQAGHLIDAPMQK 120 Query: 170 LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSHD 229 LSGG QRV ARA +L++DEP +D ++ L D + L+R+L ++ VSHD Sbjct: 121 LSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHD 180 Query: 230 INEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFI 270 ++ + + + I GTP+ + LHP EFI Sbjct: 181 LHLVMAKTDEVLCLN-HHICCSGTPEVVSLHP------EFI 214 >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. Length = 555 Score = 66.1 bits (161), Expect = 1e-11 Identities = 56/205 (27%), Positives = 98/205 (47%), Gaps = 19/205 (9%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108 +L + +G+I+ ++G +G GKSTL + GL GE+L+D +AD+ R Sbjct: 362 DLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGA-----AVSADS---RDD 413 Query: 109 RMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKIN 168 S +F F L + +G + + ++ + + LEI + K D + Sbjct: 414 YRDLFSAIFADFHLF-------DDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFS 466 Query: 169 M---LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVF 225 LS G ++R+ A+ PILL DE + DP + +ELL ++ KTI+ Sbjct: 467 TTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIII 526 Query: 226 VSHDINEAFRLGNRIAIMEGGRIIQ 250 +SHD ++ F L ++I + G I++ Sbjct: 527 ISHD-DQYFELADQIIKLAAGCIVK 550 >gnl|CDD|162132 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein. Length = 711 Score = 64.4 bits (157), Expect = 5e-11 Identities = 52/218 (23%), Positives = 99/218 (45%), Gaps = 27/218 (12%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108 + GE++ L+G SG+GKST+ + L G+VL+D L + Sbjct: 501 TFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVP------------LVQY 548 Query: 109 R---MHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVA-EHLEIVNLTKWAD 164 +H + Q +L +V N+ GL ++ ++ A H I+ D Sbjct: 549 DHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYD 608 Query: 165 CKI----NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLK 220 ++ + LSGG KQR+ ARA +L++DE S+LD LQ+ R Sbjct: 609 TEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQES-----RSRA 663 Query: 221 -KTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257 +T++ ++H ++ ++I +++ G +++ GT +++ Sbjct: 664 SRTVLLIAHRLSTV-ERADQILVLKKGSVVEMGTHKQL 700 >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional. Length = 264 Score = 63.3 bits (154), Expect = 8e-11 Identities = 55/231 (23%), Positives = 102/231 (44%), Gaps = 26/231 (11%) Query: 30 IKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD 89 I KH + + + +KA +G+++ L+G++G+GKSTL I G G+V Sbjct: 29 IPKHKNKTFFALDDISLKAY----EGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKV--- 81 Query: 90 TDKGFVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSR 149 G V+ A A + +L T N+E + + E K+ Sbjct: 82 DRNGEVSVIAISAGLSGQL------------------TGIENIEFKMLCMGFKRKEIKAM 123 Query: 150 VAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQ 209 + +E L ++ + S GM+ ++GF+ IL++DE S D + Sbjct: 124 TPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCL 183 Query: 210 DELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILH 260 D++ + + KTI FVSH++ + + +IA +EGG++ G +++ Sbjct: 184 DKIYEFKEQ-NKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPK 233 >gnl|CDD|163251 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Length = 242 Score = 63.0 bits (154), Expect = 1e-10 Identities = 56/227 (24%), Positives = 95/227 (41%), Gaps = 27/227 (11%) Query: 44 AVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADAN 103 A+ +L V GE+ V++G +GAGK+T++ I G G VL Sbjct: 17 ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTD----------- 65 Query: 104 VLRKLRMHTVSMV-----FQQFALLPWRTVARNVELGLE--------FLDIPDVERKSRV 150 L L H ++ FQ+ + TV N+EL L E K R+ Sbjct: 66 -LTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRI 124 Query: 151 AEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQD 210 E LE + L AD +LS G KQ + +LL+DEP + + + + Sbjct: 125 EEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAE 184 Query: 211 ELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257 L +L K ++V V HD+ + +++ ++ G ++ G+ ++ Sbjct: 185 LLKSLAG--KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQV 229 >gnl|CDD|182996 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed. Length = 635 Score = 62.3 bits (152), Expect = 2e-10 Identities = 53/201 (26%), Positives = 89/201 (44%), Gaps = 27/201 (13%) Query: 47 KANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTD--------------K 92 A L ++ E + L+G +GAGKSTL++ +NG + G ++ + D + Sbjct: 21 NAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVE 80 Query: 93 GFVNPYAAD--ANVLRKL-RMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVER-KS 148 G V + A+ L R H +S P + E LD ++ + ++ Sbjct: 81 GTVYDFVAEGIEEQAEYLKRYHDIS---HLVETDPSEKNLNELAKLQEQLDHHNLWQLEN 137 Query: 149 RVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRL 208 R+ E L + L D ++ LSGG ++ RA + +LL+DEP + LD L Sbjct: 138 RINEVLAQLGLD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWL 195 Query: 209 QDELLALQRKLKKTIVFVSHD 229 + L Q +I+F+SHD Sbjct: 196 EGFLKTFQ----GSIIFISHD 212 Score = 37.6 bits (88), Expect = 0.005 Identities = 53/185 (28%), Positives = 85/185 (45%), Gaps = 37/185 (20%) Query: 52 VKKGEILVLMGLSGAGKSTLLRSING-LAPVVRGEVLVDTDKGFVNPYAADANVLRKLRM 110 V++G+ + L+G +G GK+TLL+ + G L G + T KL + Sbjct: 342 VQRGDKIALIGPNGCGKTTLLKLMLGQLQAD-SGRIHCGT----------------KLEV 384 Query: 111 HTVSMVFQQF--ALLPWRTVARNVELGLEFLDIPDVE---RKSRVAEHL-EIVNLTKWAD 164 F Q L P +TV N+ G + +V R V +L + + K A Sbjct: 385 ----AYFDQHRAELDPEKTVMDNLAEGKQ-----EVMVNGRPRHVLGYLQDFLFHPKRAM 435 Query: 165 CKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIV 224 + LSGG + R+ AR F + +L++DEP + LD + + L +ELL + T++ Sbjct: 436 TPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLD-VETLELLEELLD---SYQGTVL 491 Query: 225 FVSHD 229 VSHD Sbjct: 492 LVSHD 496 >gnl|CDD|182707 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional. Length = 501 Score = 61.9 bits (151), Expect = 2e-10 Identities = 59/216 (27%), Positives = 107/216 (49%), Gaps = 20/216 (9%) Query: 42 VSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVL-VDTDKGFVNPYAA 100 V A+ A L V G ++ L+G +GAGKST+++ + G+ G +L + + F P ++ Sbjct: 17 VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSS 76 Query: 101 DANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLD-IPDVERKSRVAEH---LEI 156 + ++ Q+ L+P T+A N+ LG EF++ ++ K AE L Sbjct: 77 QEA--------GIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLAR 128 Query: 157 VNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQ 216 +NL +D + LS G +Q V A+ + + +++MDEP +L + L + Sbjct: 129 LNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTD----TETESLFRVI 184 Query: 217 RKLKKT---IVFVSHDINEAFRLGNRIAIMEGGRII 249 R+LK IV++SH + E F + + + + G+ I Sbjct: 185 RELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFI 220 Score = 45.0 bits (107), Expect = 3e-05 Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 7/85 (8%) Query: 167 INMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKK---TI 223 I +LSGG +Q+V AR T +L++DEP +D + + E+ L + K +I Sbjct: 393 IGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVD----VGAKKEIYQLINQFKAEGLSI 448 Query: 224 VFVSHDINEAFRLGNRIAIMEGGRI 248 + VS ++ E + +RI +M GRI Sbjct: 449 ILVSSEMPEVLGMSDRILVMHEGRI 473 Score = 38.4 bits (90), Expect = 0.003 Identities = 17/47 (36%), Positives = 27/47 (57%) Query: 43 SAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD 89 V + ++KGEIL + GL GAG++ L++ + G P G V +D Sbjct: 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLD 312 >gnl|CDD|140270 PTZ00243, PTZ00243, ABC transporter; Provisional. Length = 1560 Score = 60.9 bits (148), Expect = 4e-10 Identities = 55/215 (25%), Positives = 94/215 (43%), Gaps = 50/215 (23%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108 ++ V +G++ V++G +G+GKSTLL+S+ + G V + Sbjct: 680 SVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE------------------- 720 Query: 109 RMHTVSMVFQQFALLPW---RTVARNVELGLEFLDIPDVERKSRVAEHLEIVNL------ 159 +++ V QQ W TV N+ L F D E +R+A+ + + L Sbjct: 721 --RSIAYVPQQ----AWIMNATVRGNI---LFF----DEEDAARLADAVRVSQLEADLAQ 767 Query: 160 ------TKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELL 213 T+ + +N LSGG K RV ARA + L+D+P S+LD + R+ +E Sbjct: 768 LGGGLETEIGEKGVN-LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECF 826 Query: 214 ALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRI 248 L KT V +H ++ + + + GR+ Sbjct: 827 -LGALAGKTRVLATHQVH-VVPRADYVVALGDGRV 859 Score = 52.5 bits (126), Expect = 2e-07 Identities = 67/256 (26%), Positives = 116/256 (45%), Gaps = 67/256 (26%) Query: 60 LMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMHTVSMVFQQ 119 ++G +G+GKSTLL + + V GE+ VN A LR+LR +Q Sbjct: 1341 IVGRTGSGKSTLLLTFMRMVEVCGGEIR-------VNGREIGAYGLRELR--------RQ 1385 Query: 120 FALLPWR------TVARNVELGLEFLDIPDVERKSRVAEHLEIVNL-------TKWADCK 166 F+++P TV +NV+ FL+ E V LE+V L ++ D + Sbjct: 1386 FSMIPQDPVLFDGTVRQNVD---PFLEASSAE----VWAALELVGLRERVASESEGIDSR 1438 Query: 167 INMLSGGMKQRVG------FARA-FATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKL 219 + L GG VG ARA G+ +LMDE +++DP AL R++ Sbjct: 1439 V--LEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDP-----------ALDRQI 1485 Query: 220 KKTIV--FVSHD-INEAFRLG-----NRIAIMEGGRIIQCGTPQEIILHPANCYVSEFIQ 271 + T++ F ++ I A RL ++I +M+ G + + G+P+E++++ S F Sbjct: 1486 QATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQ----SIFHS 1541 Query: 272 KLNPITALVAADVMRV 287 + + A +++ Sbjct: 1542 MVEALGRSEAKRFLQL 1557 >gnl|CDD|130031 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. Length = 1522 Score = 61.1 bits (148), Expect = 4e-10 Identities = 62/220 (28%), Positives = 102/220 (46%), Gaps = 38/220 (17%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAA-------D 101 + +G ++ ++G G GKS+LL ++ V G V + +V P A Sbjct: 658 TFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYV-PQQAWIQNDSLR 716 Query: 102 ANVL--RKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNL 159 N+L + L V + ALLP LE L P +R Sbjct: 717 ENILFGKALNEKYYQQVLEACALLP----------DLEIL--PSGDR------------- 751 Query: 160 TKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKL 219 T+ + +N LSGG KQRV ARA + A I L D+P S++D + + + ++ + L Sbjct: 752 TEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVL 810 Query: 220 K-KTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEII 258 K KT + V+H I+ ++ + I +M GG+I + G+ QE++ Sbjct: 811 KNKTRILVTHGISYLPQV-DVIIVMSGGKISEMGSYQELL 849 Score = 38.0 bits (88), Expect = 0.003 Identities = 49/229 (21%), Positives = 97/229 (42%), Gaps = 46/229 (20%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108 N+ + GE + ++G +GAGKS+L + + GE+++D +N + K+ Sbjct: 1306 NVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDG----LN--------IAKI 1353 Query: 109 RMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADC--- 165 +H + + ++P V + L + LD V LE+ +L + Sbjct: 1354 GLHDLRF---KITIIPQDPVLFSGSLRMN-LDPFSQYSDEEVWWALELAHLKTFVSALPD 1409 Query: 166 KINM--------LSGGMKQRVGFARAFATGAPILLMDEPFSSLD--------PLIRMRLQ 209 K++ LS G +Q V ARA IL++DE +++D IR + + Sbjct: 1410 KLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFE 1469 Query: 210 DELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEII 258 D T++ ++H +N R+ +++ G + + G P ++ Sbjct: 1470 D----------CTVLTIAHRLNTIMDY-TRVIVLDKGEVAEFGAPSNLL 1507 >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional. Length = 549 Score = 60.7 bits (147), Expect = 5e-10 Identities = 66/269 (24%), Positives = 116/269 (43%), Gaps = 31/269 (11%) Query: 6 VKFRDVDIVFGETSNKIRKRSRYSIKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSG 65 VKF V + + K + D Y A+ + EV +GEI+ ++GL+G Sbjct: 5 VKFEHVTKKYKMYNKPFDKLKDLFFRSKDGEYHY----ALNNISFEVPEGEIVGIIGLNG 60 Query: 66 AGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMHTVSMVFQQFALLPW 125 +GKSTL I G+ +G V + KG A + + +L Sbjct: 61 SGKSTLSNLIAGVTMPNKGTVDI---KGSAALIAISSGLNGQL----------------- 100 Query: 126 RTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFA 185 T N+EL + + + K + E +E ++ K+ + S GMK R+GFA + Sbjct: 101 -TGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVH 159 Query: 186 TGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEG 245 IL++DE S D + D++ + + KTI F+SH +++ + + Sbjct: 160 INPDILVIDEALSVGDQTFTKKCLDKMNEFKEQ-GKTIFFISHSLSQVKSFCTKALWLHY 218 Query: 246 GRIIQCGTPQEIILHPANCYVSEFIQKLN 274 G++ + G +E++ H EF++K N Sbjct: 219 GQVKEYGDIKEVVDH-----YDEFLKKYN 242 >gnl|CDD|178750 PLN03211, PLN03211, ABC transporter G-25; Provisional. Length = 659 Score = 59.5 bits (144), Expect = 1e-09 Identities = 61/186 (32%), Positives = 82/186 (44%), Gaps = 27/186 (14%) Query: 55 GEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMHTVS 114 GEIL ++G SG+GKSTLL N LA ++G F A+ K + Sbjct: 94 GEILAVLGPSGSGKSTLL---NALAGRIQGN-------NFTGTILANNRKPTKQILKRTG 143 Query: 115 MVFQQFALLPWRTVARNVELGLEFLDIPDV---ERKSRVAEH-LEIVNLTKWADCK---- 166 V Q L P TV R + L +P + K VAE + + LTK C+ Sbjct: 144 FVTQDDILYPHLTV-RETLVFCSLLRLPKSLTKQEKILVAESVISELGLTK---CENTII 199 Query: 167 ----INMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKT 222 I +SGG ++RV A +L++DEP S LD RL L +L +K KT Sbjct: 200 GNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQK-GKT 258 Query: 223 IVFVSH 228 IV H Sbjct: 259 IVTSMH 264 >gnl|CDD|178676 PLN03130, PLN03130, ABC transporter C family member; Provisional. Length = 1622 Score = 56.7 bits (137), Expect = 9e-09 Identities = 58/218 (26%), Positives = 108/218 (49%), Gaps = 35/218 (16%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSING-LAPVVRGEVLVDTDKGFVNPYAADANVLRK 107 NL+V G ++ ++G +G GK++L+ ++ G L P V++ +V Sbjct: 637 NLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVP----------- 685 Query: 108 LRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAE---HLEIV---NLTK 161 VS +F TV N+ G F D ER V L+++ +LT+ Sbjct: 686 ----QVSWIFNA-------TVRDNILFGSPF-DPERYERAIDVTALQHDLDLLPGGDLTE 733 Query: 162 WADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLK- 220 + +N +SGG KQRV ARA + + + + D+P S+LD + ++ D+ ++ +L+ Sbjct: 734 IGERGVN-ISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDK--CIKDELRG 790 Query: 221 KTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEII 258 KT V V++ ++ ++ +RI ++ G I + GT +E+ Sbjct: 791 KTRVLVTNQLHFLSQV-DRIILVHEGMIKEEGTYEELS 827 Score = 37.8 bits (88), Expect = 0.004 Identities = 52/233 (22%), Positives = 106/233 (45%), Gaps = 58/233 (24%) Query: 51 EVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANV----LR 106 E+ E + ++G +GAGKS++L ++ + + RG +L+D ++ L Sbjct: 1261 EISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILID-----------GCDISKFGLM 1309 Query: 107 KLRMHTVSMVFQ---------QFALLPWRTVARNVEL--GLEFLDIPDVERK------SR 149 LR + ++ Q +F L P+ + +L LE + DV R+ + Sbjct: 1310 DLR-KVLGIIPQAPVLFSGTVRFNLDPFNE-HNDADLWESLERAHLKDVIRRNSLGLDAE 1367 Query: 150 VAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLD----PLIR 205 V+E E S G +Q + ARA + IL++DE +++D LI+ Sbjct: 1368 VSEAGE-------------NFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQ 1414 Query: 206 MRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEII 258 +++E + T++ ++H +N +RI +++ GR+++ TP+ ++ Sbjct: 1415 KTIREEFKSC------TMLIIAHRLNTIIDC-DRILVLDAGRVVEFDTPENLL 1460 >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional. Length = 225 Score = 56.3 bits (136), Expect = 1e-08 Identities = 52/197 (26%), Positives = 80/197 (40%), Gaps = 36/197 (18%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD-TDKGFVNPYAADANVLRK 107 + ++ GE ++ G SG GKSTLL+ + L G +L + D + P R+ Sbjct: 27 SFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEI-----YRQ 81 Query: 108 LRMHTVSMVFQQFAL----------LPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIV 157 VS Q L PW+ RN PD E + Sbjct: 82 ----QVSYCAQTPTLFGDTVYDNLIFPWQI--RN--------QQPDPAIFLDDLERFALP 127 Query: 158 N--LTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLAL 215 + LTK I LSGG KQR+ R +LL+DE S+LD + + + + Sbjct: 128 DTILTK----NIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRY 183 Query: 216 QRKLKKTIVFVSHDINE 232 R+ +++V+HD +E Sbjct: 184 VREQNIAVLWVTHDKDE 200 >gnl|CDD|163509 TIGR03797, NHPM_micro_ABC2, NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif. Length = 686 Score = 55.4 bits (134), Expect = 2e-08 Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 11/92 (11%) Query: 170 LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSH- 228 LSGG +QR+ ARA ILL DE S+LD R Q + +LK T + ++H Sbjct: 589 LSGGQRQRLLIARALVRKPRILLFDEATSALDN----RTQAIVSESLERLKVTRIVIAHR 644 Query: 229 --DINEAFRLGNRIAIMEGGRIIQCGTPQEII 258 I A +RI +++ GR++Q GT E++ Sbjct: 645 LSTIRNA----DRIYVLDAGRVVQQGTYDELM 672 Score = 34.6 bits (80), Expect = 0.039 Identities = 17/41 (41%), Positives = 26/41 (63%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD 89 +L+++ GE + ++G SG+GKSTLLR + G G V D Sbjct: 473 SLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYD 513 >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 Score = 54.5 bits (132), Expect = 4e-08 Identities = 59/210 (28%), Positives = 87/210 (41%), Gaps = 68/210 (32%) Query: 60 LMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMHTVSMVFQQ 119 ++GL+GAGKSTLLR + G+ DK F + V + Q+ Sbjct: 36 VLGLNGAGKSTLLRIMAGV------------DKEFNGEARPAPGI-------KVGYLPQE 76 Query: 120 FALLPWRTVARNVELGL--------EFLDI------PDVERKSRVAEH------------ 153 L P +TV NVE G+ F +I PD + + +AE Sbjct: 77 PQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADA 136 Query: 154 ------LEIV----NLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPL 203 LEI W D + LSGG ++RV R + +LL+DEP + LD Sbjct: 137 WDLDRKLEIAMDALRCPPW-DADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDA- 194 Query: 204 IRMRLQDELLA-LQRKLKK---TIVFVSHD 229 E +A L++ L++ T+V V+HD Sbjct: 195 -------ESVAWLEQHLQEYPGTVVAVTHD 217 Score = 54.2 bits (131), Expect = 5e-08 Identities = 54/182 (29%), Positives = 82/182 (45%), Gaps = 31/182 (17%) Query: 52 VKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLV-DTDKGFVNPYAADANVLRKLRM 110 + G I+ ++G +GAGKSTL R I G G + + +T K Sbjct: 345 LPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVK------------------ 386 Query: 111 HTVSMVFQQF-ALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADC--KI 167 ++ V Q AL P +TV + GL+ + + E SR ++ N K +D K+ Sbjct: 387 --LAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRA--YVGRFNF-KGSDQQKKV 441 Query: 168 NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVS 227 LSGG + RV A+ +G +LL+DEP + LD L++ LL V +S Sbjct: 442 GQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLE----FAGCAVVIS 497 Query: 228 HD 229 HD Sbjct: 498 HD 499 >gnl|CDD|173501 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional. Length = 1466 Score = 54.3 bits (130), Expect = 5e-08 Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 7/131 (5%) Query: 105 LRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIV-NLTKWA 163 L+ LR + S+V Q+ L ++ N++ G E DV+R + A E + +L Sbjct: 1291 LKDLR-NLFSIVSQEPMLFN-MSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKY 1348 Query: 164 DCKI----NMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKL 219 D + LSGG KQR+ ARA ILL+DE SSLD ++ ++ ++ K Sbjct: 1349 DTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKA 1408 Query: 220 KKTIVFVSHDI 230 KTI+ ++H I Sbjct: 1409 DKTIITIAHRI 1419 Score = 42.3 bits (99), Expect = 2e-04 Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 6/76 (7%) Query: 170 LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSHD 229 LSGG KQR+ ARA IL++DE SSLD +Q + L+ + + ++H Sbjct: 580 LSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHR 639 Query: 230 I------NEAFRLGNR 239 + N F L NR Sbjct: 640 LSTIRYANTIFVLSNR 655 Score = 30.8 bits (69), Expect = 0.53 Identities = 13/41 (31%), Positives = 24/41 (58%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVD 89 N + +G+ +G SG GKST+L+ I L G+++++ Sbjct: 405 NFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIIN 445 >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional. Length = 200 Score = 54.2 bits (130), Expect = 5e-08 Identities = 44/177 (24%), Positives = 77/177 (43%), Gaps = 19/177 (10%) Query: 54 KGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMHTV 113 G +L L G +GAGK+TLL+ I GL +GE+L + ++ + L + Sbjct: 26 AGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQ-----------SIKKDLCTYQK 74 Query: 114 SMVF--QQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKINMLS 171 + F + + P+ T+ N DI + E + +L D +LS Sbjct: 75 QLCFVGHRSGINPYLTLRENC-----LYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLS 129 Query: 172 GGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSH 228 G K++V R + + A + L+DEP +LD L + + ++ R ++ SH Sbjct: 130 SGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQE-HRAKGGAVLLTSH 185 >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional. Length = 592 Score = 53.6 bits (129), Expect = 8e-08 Identities = 63/225 (28%), Positives = 106/225 (47%), Gaps = 38/225 (16%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADAN-VLRK 107 NL V + L+G +G+GKSTL + G P+ GE+ +D P ++ ++ VLR+ Sbjct: 361 NLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDG-----RPLSSLSHSVLRQ 415 Query: 108 LRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADC-- 165 V+MV QQ ++ T NV LG + + +V + LE V L + A Sbjct: 416 ----GVAMV-QQDPVVLADTFLANVTLGRDI-------SEEQVWQALETVQLAELARSLP 463 Query: 166 ---------KINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQ 216 + N LS G KQ + AR IL++DE +++D +Q L A++ Sbjct: 464 DGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVR 523 Query: 217 RKLKKTIVFVSH---DINEAFRLGNRIAIMEGGRIIQCGTPQEII 258 T+V ++H I EA + I ++ G+ ++ GT Q+++ Sbjct: 524 E--HTTLVVIAHRLSTIVEA----DTILVLHRGQAVEQGTHQQLL 562 >gnl|CDD|162131 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein. Length = 1394 Score = 53.2 bits (128), Expect = 1e-07 Identities = 53/236 (22%), Positives = 89/236 (37%), Gaps = 39/236 (16%) Query: 42 VSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSI----NGLAPVVRGEVLVD--TDKGFV 95 + +IK GE+ V++G G+G STLL++I +G V G + D T + Sbjct: 80 MDGLIKP------GELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK 133 Query: 96 NPYAADANVLRKLRMHTVSMVFQQ---FALLPWRTVARNVELGLEFLDIPDVERKSRVAE 152 Y D + +H + + FA +T + V R+ A+ Sbjct: 134 KHYRGDVVYNAETDVHFPHLTVGETLDFAAR-CKTPQNRPDG---------VSREEY-AK 182 Query: 153 HLEIVNL----------TKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDP 202 H+ V + TK + + +SGG ++RV A A GA I D LD Sbjct: 183 HIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDS 242 Query: 203 LIRMRLQDELLALQRKLKKTIVFVS--HDINEAFRLGNRIAIMEGGRIIQCGTPQE 256 + L L T V+ +A+ L +++ ++ G I G + Sbjct: 243 ATALEFIRALKTSANILDTT-PLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADK 297 Score = 49.7 bits (119), Expect = 1e-06 Identities = 49/160 (30%), Positives = 75/160 (46%), Gaps = 21/160 (13%) Query: 52 VKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMH 111 VK G + LMG SGAGK+TLL N LA V V+ D+ VN D++ R Sbjct: 786 VKPGTLTALMGASGAGKTTLL---NVLAERVTTGVITGGDR-LVNGRPLDSSFQR----- 836 Query: 112 TVSMVFQQFALLPWRTVARNVELGLEFL----DIPDVERKSRVAEHLEIVNLTKWADCKI 167 ++ V QQ LP TV ++ +L + E+ V E ++++ + +AD + Sbjct: 837 SIGYVQQQDLHLPTSTVRESLRFS-AYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVV 895 Query: 168 NMLSGGM--KQR----VGFARAFATGAPILLMDEPFSSLD 201 + G+ +QR +G A +L +DEP S LD Sbjct: 896 GVPGEGLNVEQRKRLTIGVELV-AKPKLLLFLDEPTSGLD 934 >gnl|CDD|178771 PLN03232, PLN03232, ABC transporter C family member; Provisional. Length = 1495 Score = 53.1 bits (127), Expect = 1e-07 Identities = 60/222 (27%), Positives = 112/222 (50%), Gaps = 45/222 (20%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108 NLE+ G ++ ++G +G GK++L+ ++ GE+ +A ++V+ + Sbjct: 637 NLEIPVGSLVAIVGGTGEGKTSLISAM-------LGEL----------SHAETSSVVIR- 678 Query: 109 RMHTVSMVFQQFALLPW---RTVARNVELGLEFLDIPDVERKSRVAE------HLEIV-- 157 +V+ V Q + W TV N+ G +F + ER R + L+++ Sbjct: 679 --GSVAYVPQ----VSWIFNATVRENILFGSDF----ESERYWRAIDVTALQHDLDLLPG 728 Query: 158 -NLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQ 216 +LT+ + +N +SGG KQRV ARA + + I + D+P S+LD + ++ D ++ Sbjct: 729 RDLTEIGERGVN-ISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDS--CMK 785 Query: 217 RKLK-KTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257 +LK KT V V++ ++ L +RI ++ G I + GT E+ Sbjct: 786 DELKGKTRVLVTNQLH-FLPLMDRIILVSEGMIKEEGTFAEL 826 Score = 47.7 bits (113), Expect = 4e-06 Identities = 57/270 (21%), Positives = 114/270 (42%), Gaps = 41/270 (15%) Query: 26 SRYSIKKHDKVSEY--GMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVR 83 SR SIK D Y G+ + + V E + ++G +GAGKS++L ++ + + + Sbjct: 1231 SRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEK 1290 Query: 84 GEVLVDTDKGFVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVE---------- 133 G +++D D + V + Q +L TV N++ Sbjct: 1291 GRIMID---------DCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADL 1341 Query: 134 -LGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILL 192 LE I DV ++ E+ + S G +Q + ARA + IL+ Sbjct: 1342 WEALERAHIKDVIDRNPFGLDAEVSEGGE-------NFSVGQRQLLSLARALLRRSKILV 1394 Query: 193 MDEPFSSL----DPLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGGRI 248 +DE +S+ D LI+ +++E + T++ ++H +N ++I ++ G++ Sbjct: 1395 LDEATASVDVRTDSLIQRTIREEFKSC------TMLVIAHRLNTIIDC-DKILVLSSGQV 1447 Query: 249 IQCGTPQEIILHPANCYVSEFIQKLNPITA 278 ++ +PQE++ + + + P A Sbjct: 1448 LEYDSPQELLSRDTSAF-FRMVHSTGPANA 1476 >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional. Length = 490 Score = 48.1 bits (115), Expect = 3e-06 Identities = 57/205 (27%), Positives = 88/205 (42%), Gaps = 49/205 (23%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAP------VV-------RGEVLVDTDK--G 93 + +V GE ++G +GAGKSTLL I G P + GE + D K G Sbjct: 280 SWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIG 339 Query: 94 FVNPYAADANVLRKLRMHTVSMVFQQFALLPWR--TVARNVELGLEFLD-------IPDV 144 +V+ +H L +R T RNV L F D + D Sbjct: 340 YVSS-----------SLH-----------LDYRVSTSVRNVILS-GFFDSIGIYQAVSDR 376 Query: 145 ERKSRVAEHLEIVNLTKW-ADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPL 203 ++K + L+I+ + K AD + LS G ++ RA +L++DEP LDPL Sbjct: 377 QQK-LAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPL 435 Query: 204 IRMRLQDELLALQRKLKKTIVFVSH 228 R ++ + L + + ++FVSH Sbjct: 436 NRQLVRRFVDVLISEGETQLLFVSH 460 Score = 43.9 bits (104), Expect = 7e-05 Identities = 53/217 (24%), Positives = 94/217 (43%), Gaps = 25/217 (11%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108 +L + G+ +G +G+GKS L R++ G P++ GE F + L+KL Sbjct: 23 SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGER----QSQFSHITRLSFEQLQKL 78 Query: 109 RMHTVSMVFQQF---ALLPW-----RTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLT 160 VS +Q+ L P RT A ++ ++ D R ++A+ I L Sbjct: 79 ----VSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVK-----DPARCEQLAQQFGITALL 129 Query: 161 KWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLK 220 D + LS G ++ +A + +L++DEPF LD R +L + L +L + Sbjct: 130 ---DRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQS-G 185 Query: 221 KTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEI 257 T+V V + +E ++ + + G +EI Sbjct: 186 ITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEI 222 >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional. Length = 204 Score = 47.5 bits (114), Expect = 5e-06 Identities = 42/163 (25%), Positives = 67/163 (41%), Gaps = 32/163 (19%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108 + + GE++ + G +GAGK++LLR + G L D G V + Sbjct: 21 SFTLNAGELVQIEGPNGAGKTSLLRILAG---------LARPDAGEVL--------WQGE 63 Query: 109 RMHTVSMVFQQFALL---------PWRTVARNVELGLEFL-DIPDVERKSRVAEHLEIVN 158 + + Q LL T N L F + + E L V Sbjct: 64 PIRRQRDEYHQ-DLLYLGHQPGIKTELTALEN----LRFYQRLHGPGDDEALWEALAQVG 118 Query: 159 LTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLD 201 L + D + LS G ++RV AR + T AP+ ++DEPF+++D Sbjct: 119 LAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAID 161 >gnl|CDD|183324 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed. Length = 556 Score = 46.3 bits (111), Expect = 1e-05 Identities = 59/214 (27%), Positives = 83/214 (38%), Gaps = 71/214 (33%) Query: 57 ILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMHTVSMV 116 I VL GL+GAGKSTLLR + G+ GE G V + Sbjct: 36 IGVL-GLNGAGKSTLLRIMAGVDKEFEGEARPA--PGI-----------------KVGYL 75 Query: 117 FQQFALLPWRTVARNVELGL--------EFLDI------PD------VERKSRVAEHLEI 156 Q+ L P +TV NVE G+ F +I PD + + E ++ Sbjct: 76 PQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDA 135 Query: 157 VNLTKW-----------------ADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSS 199 + W D K+ LSGG ++RV R +LL+DEP + Sbjct: 136 ADA--WDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNH 193 Query: 200 LDPLIRMRLQDELLA-LQRKLKK---TIVFVSHD 229 LD E +A L++ L T+V V+HD Sbjct: 194 LDA--------ESVAWLEQFLHDYPGTVVAVTHD 219 Score = 46.3 bits (111), Expect = 1e-05 Identities = 43/164 (26%), Positives = 67/164 (40%), Gaps = 51/164 (31%) Query: 54 KGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLV-DTDK-GFVNPYAADANVLRKLRMH 111 G I+ ++G +GAGKSTL + I G G + + +T K +V+ Sbjct: 349 PGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVD--------------- 393 Query: 112 TVSMVFQQF--ALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADC---- 165 Q AL P +TV + GL+ + + + E SR A Sbjct: 394 -------QSRDALDPNKTVWEEISGGLDIIKVGNREIPSR-------------AYVGRFN 433 Query: 166 --------KINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLD 201 K+ +LSGG + R+ A+ G +LL+DEP + LD Sbjct: 434 FKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLD 477 >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional. Length = 590 Score = 46.3 bits (111), Expect = 1e-05 Identities = 54/227 (23%), Positives = 95/227 (41%), Gaps = 31/227 (13%) Query: 6 VKFRDVDIVFGETSNKIRKRSRYSIKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSG 65 ++ R I F E + ++ D + G S ++ E+ +GE++ ++G +G Sbjct: 317 MRIRPEPIEFEERPPRDESERETLVEYPDLTKKLGDFSLEVEGG-EIYEGEVIGIVGPNG 375 Query: 66 AGKSTLLRSING-LAPVVRGEVLVDTDKGFVNPY-AADANVLRKLRMHTVSMVFQQFALL 123 GK+T + + G L P GEV + + Y D + TV + Sbjct: 376 IGKTTFAKLLAGVLKPD-EGEVDPELKISYKPQYIKPDYDG-------TVEDLL------ 421 Query: 124 PWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARA 183 R++ + LG + KS + + L L + D + LSGG QRV A Sbjct: 422 --RSITDD--LGSSYY-------KSEIIKPL---QLERLLDKNVKDLSGGELQRVAIAAC 467 Query: 184 FATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSHDI 230 + A + L+DEP + LD R+ + + + + + T + V HDI Sbjct: 468 LSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDI 514 Score = 42.5 bits (101), Expect = 1e-04 Identities = 54/196 (27%), Positives = 86/196 (43%), Gaps = 37/196 (18%) Query: 52 VKKGEILVLMGLSGAGKSTLLRSING-LAPVVRGEVLVDTDKGFVNPYAADANVLRKLR- 109 K+G++ ++G +G GK+T ++ ++G L P L D ++ + D VL++ R Sbjct: 96 PKEGKVTGILGPNGIGKTTAVKILSGELIPN-----LGDYEE----EPSWD-EVLKRFRG 145 Query: 110 --MHT-----------VSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEI 156 + V Q L+P + V L+ +D ER ++ E +E Sbjct: 146 TELQNYFKKLYNGEIKVVHKPQYVDLIP-KVFKGKVRELLKKVD----ERG-KLDEVVER 199 Query: 157 VNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQ 216 + L D I+ LSGG QRV A A A DEP S LD R+ + L Sbjct: 200 LGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVAR----LI 255 Query: 217 RKL--KKTIVFVSHDI 230 R+L K ++ V HD+ Sbjct: 256 RELAEGKYVLVVEHDL 271 >gnl|CDD|162277 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. Length = 1490 Score = 46.1 bits (109), Expect = 1e-05 Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 41/172 (23%) Query: 42 VSAVIK-ANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAA 100 V+ V+K + +++KG++L + G +G+GKS+LL ++ GE L ++ Sbjct: 438 VTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLM-------MIMGE-LEPSEG-------- 481 Query: 101 DANVLRKLRMHTVSMVFQ-QFALLPWRTVARNVELGLEFLDIPDVERKSRV--AEHLEIV 157 K++ H+ + F Q + + T+ N+ GL + D R + V A LE Sbjct: 482 ------KIK-HSGRISFSPQTSWIMPGTIKDNIIFGLSY----DEYRYTSVIKACQLE-E 529 Query: 158 NLTKWADCKINM--------LSGGMKQRVGFARAFATGAPILLMDEPFSSLD 201 ++ + + K LSGG + R+ ARA A + L+D PF+ LD Sbjct: 530 DIALFPE-KDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLD 580 Score = 46.1 bits (109), Expect = 2e-05 Identities = 55/226 (24%), Positives = 108/226 (47%), Gaps = 47/226 (20%) Query: 52 VKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMH 111 V+ G+ + L+G +G+GKSTLL ++ L GE+ +D + ++ L+ R Sbjct: 1242 VEGGQRVGLLGRTGSGKSTLLSALLRLLST-EGEIQIDG-------VSWNSVTLQTWR-- 1291 Query: 112 TVSMVFQQFALLPWR------TVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADC 165 + F ++P + T +N++ ++ D E +VAE + + ++ + Sbjct: 1292 ------KAFGVIPQKVFIFSGTFRKNLDPYEQWSD----EEIWKVAEEVGLKSVIEQFPD 1341 Query: 166 KIN--------MLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQR 217 K++ +LS G KQ + AR+ + A ILL+DEP + LDP+ L +++ Sbjct: 1342 KLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVT-------LQIIRK 1394 Query: 218 KLKK-----TIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEII 258 LK+ T++ H + EA + ++EG + Q + Q+++ Sbjct: 1395 TLKQSFSNCTVILSEHRV-EALLECQQFLVIEGSSVKQYDSIQKLL 1439 >gnl|CDD|178685 PLN03140, PLN03140, ABC transporter G family member; Provisional. Length = 1470 Score = 45.6 bits (108), Expect = 2e-05 Identities = 59/218 (27%), Positives = 94/218 (43%), Gaps = 34/218 (15%) Query: 53 KKGEILVLMGLSGAGKSTLLRSING--LAPVVRGEVLVDTDKGFVNPYAADANVLRKLRM 110 + G + LMG+SGAGK+TL+ + G + G++ + +A + + + Sbjct: 904 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDI 963 Query: 111 H----TV--SMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWAD 164 H TV S+++ F LP E+ E E+ V E +E+V L D Sbjct: 964 HSPQVTVRESLIYSAFLRLP-------KEVSKE-------EKMMFVDEVMELVELDNLKD 1009 Query: 165 CKINM-----LSGGMKQRVGFARAFATGAPILLMDEPFSSLD---PLIRMRLQDELLALQ 216 + + LS ++R+ A I+ MDEP S LD I MR + Sbjct: 1010 AIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1069 Query: 217 RKLKKTIVFVSHDINEAFRLGNRIAIME-GGRIIQCGT 253 R + TI S DI EAF + + +M+ GG++I G Sbjct: 1070 RTVVCTIHQPSIDIFEAF---DELLLMKRGGQVIYSGP 1104 Score = 27.1 bits (60), Expect = 6.7 Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 8/110 (7%) Query: 154 LEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELL 213 L+I T D I +SGG K+RV L MDE + LD ++ + Sbjct: 321 LDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQI---VK 377 Query: 214 ALQR--KLKKTIVFVS--HDINEAFRLGNRIAIMEGGRIIQCGTPQEIIL 259 LQ+ L + V +S E F L + I ++ G+I+ G P++ IL Sbjct: 378 CLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQG-PRDHIL 426 >gnl|CDD|161968 TIGR00630, uvra, excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 924 Score = 45.4 bits (108), Expect = 2e-05 Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 10/103 (9%) Query: 167 INMLSGGMKQRVGFARAFATG--APILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIV 224 LSGG QR+ A +G + ++DEP L RL + L L R L T++ Sbjct: 485 AGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRL-RDLGNTVI 543 Query: 225 FVSHDINEAFRLGNRI------AIMEGGRIIQCGTPQEIILHP 261 V HD E R + + A + GG ++ GTP+EI+ +P Sbjct: 544 VVEHD-EETIRAADYVIDIGPGAGIHGGEVVASGTPEEILANP 585 Score = 32.7 bits (75), Expect = 0.14 Identities = 39/141 (27%), Positives = 63/141 (44%), Gaps = 35/141 (24%) Query: 138 FLDIPDVERKSR--VAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAF---ATGAPILL 192 F +P + RK + L + L + A LSGG QR+ A+ +TG + + Sbjct: 799 FEAVPSISRKLQTLCDVGLGYIKLGQPA----TTLSGGEAQRIKLAKELSKRSTGRTLYI 854 Query: 193 MDEPFSSL---DPLIRMRLQDELLALQRKLKK--TIVFVSHD---INEAFRL-------G 237 +DEP + L D I+ L+ LQR + + T+V + H+ I A + G Sbjct: 855 LDEPTTGLHFDD--IKKLLE----VLQRLVDQGNTVVVIEHNLDVIKTADYIIDLGPEGG 908 Query: 238 NRIAIMEGGRIIQCGTPQEII 258 + GG I+ GTP+E+ Sbjct: 909 DG-----GGTIVASGTPEEVA 924 Score = 31.9 bits (73), Expect = 0.24 Identities = 10/23 (43%), Positives = 20/23 (86%) Query: 49 NLEVKKGEILVLMGLSGAGKSTL 71 ++E+ + +++V+ GLSG+GKS+L Sbjct: 16 DVEIPRDKLVVITGLSGSGKSSL 38 Score = 28.1 bits (63), Expect = 3.2 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVV 82 + + G + G+SG+GKSTL+ L P + Sbjct: 627 TVSIPLGLFTCITGVSGSGKSTLINDT--LYPAL 658 >gnl|CDD|162636 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. Length = 243 Score = 44.9 bits (107), Expect = 3e-05 Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 2/43 (4%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSING--LAPVVRGEVLVD 89 NL VKKGEI +MG +G+GKSTL ++I G V G +L Sbjct: 20 NLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFK 62 >gnl|CDD|162129 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei. Length = 659 Score = 42.0 bits (99), Expect = 2e-04 Identities = 48/190 (25%), Positives = 72/190 (37%), Gaps = 26/190 (13%) Query: 45 VIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTD-KGFV---NPYAA 100 + + EV G L++ G +G GKS+L R + L PV G + K F PY Sbjct: 468 IESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMT 527 Query: 101 DANVLRKLRMHTV--SMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVN 158 L LR + R + +L + LD + V Sbjct: 528 ----LGTLRDQIIYPDSSEDMK-----RRGLSDKDL-EQILDNVQLTHILEREGGWSAV- 576 Query: 159 LTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRK 218 W D +LSGG KQR+ AR F ++DE S++ ++ + L R+ Sbjct: 577 -QDWMD----VLSGGEKQRIAMARLFYHKPQFAILDECTSAVSV----DVEGYMYRLCRE 627 Query: 219 LKKTIVFVSH 228 T+ VSH Sbjct: 628 FGITLFSVSH 637 >gnl|CDD|185024 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional. Length = 530 Score = 41.4 bits (98), Expect = 3e-04 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 6/85 (7%) Query: 166 KINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDEL-LALQRKLKKTIV 224 + +LSGG K R+ F + +L+MDEP + +D M + L +AL+ K + T++ Sbjct: 435 SVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMD----MESIESLNMALE-KYEGTLI 489 Query: 225 FVSHDINEAFRLGNRIAIMEGGRII 249 FVSHD L RI + ++ Sbjct: 490 FVSHDREFVSSLATRIIEITPDGVV 514 Score = 34.5 bits (80), Expect = 0.044 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 6/58 (10%) Query: 173 GMKQRVGFARAFATGAPILLMDEPFSSLD-PLIRMRLQDELLALQRKLKKTIVFVSHD 229 G K RV A+A + ILL+DEP ++LD IR L+D L + T++ +SHD Sbjct: 159 GWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRW-LEDVL----NERNSTMIIISHD 211 Score = 32.9 bits (76), Expect = 0.13 Identities = 16/38 (42%), Positives = 24/38 (63%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEV 86 NL ++ GE L ++G +G GK+TLLR++ G G V Sbjct: 339 NLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV 376 >gnl|CDD|178622 PLN03073, PLN03073, ABC transporter F family; Provisional. Length = 718 Score = 40.6 bits (95), Expect = 5e-04 Identities = 49/198 (24%), Positives = 77/198 (38%), Gaps = 35/198 (17%) Query: 60 LMGLSGAGKSTLLR-----SINGL---APVVRGEVLVDTDKGFVNPYAADANVLRKLRMH 111 L+G +G GK+T LR +I+G+ ++ E V D + ++ R + Sbjct: 208 LVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLE 267 Query: 112 TVSMVFQQFALLPWRTVARNVELG--------------------LEFLDIPDVERKSRVA 151 + + Q L + T + LE +D E +R A Sbjct: 268 EEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAE--ARAA 325 Query: 152 EHLEIVNLTKWADCK-INMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQD 210 L ++ T K SGG + R+ ARA +LL+DEP + LD + L+ Sbjct: 326 SILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLET 385 Query: 211 ELLALQRKLKKTIVFVSH 228 LL K KT + VSH Sbjct: 386 YLL----KWPKTFIVVSH 399 Score = 36.8 bits (85), Expect = 0.008 Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 10/63 (15%) Query: 170 LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKL---KKTIVFV 226 LSGG K RV FA+ ILL+DEP + LD D + AL + L + ++ V Sbjct: 628 LSGGQKSRVAFAKITFKKPHILLLDEPSNHLD-------LDAVEALIQGLVLFQGGVLMV 680 Query: 227 SHD 229 SHD Sbjct: 681 SHD 683 >gnl|CDD|128665 smart00382, AAA, ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 Score = 40.1 bits (93), Expect = 9e-04 Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 5/79 (6%) Query: 169 MLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDE-----LLALQRKLKKTI 223 SG ++ R+ A A +L++DE S LD L LL L+ + T+ Sbjct: 60 SGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTV 119 Query: 224 VFVSHDINEAFRLGNRIAI 242 + ++D + R Sbjct: 120 ILTTNDEKDLGPALLRRRF 138 Score = 37.4 bits (86), Expect = 0.006 Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 4/88 (4%) Query: 54 KGEILVLMGLSGAGKSTLLRSI-NGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMHT 112 GE+++++G G+GK+TL R++ L P G + +D + ++ + + Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKAS 60 Query: 113 VSMVFQQFALLPWRTVARNVELGLEFLD 140 S + L +AR ++ + LD Sbjct: 61 GS-GELRLRLA--LALARKLKPDVLILD 85 >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional. Length = 195 Score = 38.3 bits (89), Expect = 0.003 Identities = 39/172 (22%), Positives = 67/172 (38%), Gaps = 18/172 (10%) Query: 57 ILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMHTVSMV 116 I + G +G GKS+LLR I G+ G + Y + N+ + + + Sbjct: 28 ITYIKGANGCGKSSLLRMIAGIMQPSSGNI-----------YYKNCNI-NNIAKPYCTYI 75 Query: 117 FQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADCKINMLSGGMKQ 176 L TV N++ E + + + L D K LS GM++ Sbjct: 76 GHNLGLKLEMTVFENLKFWSEIYN-----SAETLYAAIHYFKLHDLLDEKCYSLSSGMQK 130 Query: 177 RVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSH 228 V AR A + + L+DE ++L R L + L+ ++ ++ SH Sbjct: 131 IVAIARLIACQSDLWLLDEVETNLSKENR-DLLNNLIVMKANSGGIVLLSSH 181 >gnl|CDD|182605 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional. Length = 638 Score = 37.5 bits (87), Expect = 0.006 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 10/62 (16%) Query: 171 SGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKK---TIVFVS 227 SGG + R+ A+A + +LL+DEP + LD D ++ L++ LK T++ +S Sbjct: 151 SGGWRMRLNLAQALICRSDLLLLDEPTNHLD-------LDAVIWLEKWLKSYQGTLILIS 203 Query: 228 HD 229 HD Sbjct: 204 HD 205 Score = 35.5 bits (82), Expect = 0.019 Identities = 64/205 (31%), Positives = 88/205 (42%), Gaps = 39/205 (19%) Query: 32 KHDKVSE-YG--MVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSING-LAPVVRGEVL 87 K +KVS YG ++ IK NL G + L+G +GAGKSTL++ + G LAPV GE Sbjct: 314 KMEKVSAGYGDRIILDSIKLNL--VPGSRIGLLGRNGAGKSTLIKLLAGELAPV-SGE-- 368 Query: 88 VDTDKGFVNPYAADANVLRKLRMHTVSMVFQQFALLPWRTVA---RNVELGLEFLDIPDV 144 + KG Y A L LR + Q A L + + R+ G F Sbjct: 369 IGLAKGIKLGYFAQHQ-LEFLRADESPL--QHLARLAPQELEQKLRDYLGGFGF------ 419 Query: 145 ERKSRVAEHLEIVNLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLI 204 + +V E SGG K R+ A +LL+DEP + LD + Sbjct: 420 -QGDKVTEETR-------------RFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDM 465 Query: 205 RMRLQDELLALQRKLKKTIVFVSHD 229 R L + L+ + L V VSHD Sbjct: 466 RQALTEALIDFEGAL----VVVSHD 486 >gnl|CDD|178861 PRK00098, PRK00098, GTPase RsgA; Reviewed. Length = 298 Score = 36.3 bits (85), Expect = 0.012 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 3/27 (11%) Query: 54 KGEILVLMGLSGAGKSTLLRSINGLAP 80 G++ VL G SG GKSTL +N LAP Sbjct: 163 AGKVTVLAGQSGVGKSTL---LNALAP 186 >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed. Length = 248 Score = 35.5 bits (82), Expect = 0.022 Identities = 15/29 (51%), Positives = 22/29 (75%) Query: 49 NLEVKKGEILVLMGLSGAGKSTLLRSING 77 NLEV+ GE+ +MG +G+GKSTL ++ G Sbjct: 21 NLEVRPGEVHAIMGPNGSGKSTLSATLAG 49 >gnl|CDD|179346 PRK01889, PRK01889, GTPase RsgA; Reviewed. Length = 356 Score = 34.1 bits (79), Expect = 0.054 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 3/27 (11%) Query: 52 VKKGEILVLMGLSGAGKSTLLRSINGL 78 + G+ + L+G SG GKSTL +N L Sbjct: 192 LSGGKTVALLGSSGVGKSTL---VNAL 215 >gnl|CDD|180120 PRK05506, PRK05506, bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional. Length = 632 Score = 32.6 bits (75), Expect = 0.16 Identities = 12/30 (40%), Positives = 18/30 (60%) Query: 42 VSAVIKANLEVKKGEILVLMGLSGAGKSTL 71 VS +A + +K + GLSG+GKST+ Sbjct: 447 VSREARAARKGQKPATVWFTGLSGSGKSTI 476 >gnl|CDD|179675 PRK03918, PRK03918, chromosome segregation protein; Provisional. Length = 880 Score = 32.3 bits (74), Expect = 0.16 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 15/73 (20%) Query: 167 INMLSGGMKQRVGFARAF--------ATGAPILLMDEPFSSLDPLIRMRLQDELLALQRK 218 + LSGG +R+ AF A P+L++DEP LD R +L D ++R Sbjct: 786 LTFLSGG--ERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVD---IMERY 840 Query: 219 LKK--TIVFVSHD 229 L+K ++ VSHD Sbjct: 841 LRKIPQVIIVSHD 853 >gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 1042 Score = 32.2 bits (73), Expect = 0.19 Identities = 23/77 (29%), Positives = 29/77 (37%), Gaps = 13/77 (16%) Query: 170 LSGGMKQRVGFARAFA----------TGAPILLMDEPFSSLDPLIRMRLQDELLALQRKL 219 LSGG + A A T L +DE F SLD R L A+ R+ Sbjct: 951 LSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAI-REG 1009 Query: 220 KKTIVFVSH--DINEAF 234 K I +SH + E Sbjct: 1010 SKMIGIISHVPEFRERI 1026 >gnl|CDD|180064 PRK05416, PRK05416, glmZ(sRNA)-inactivating NTPase; Provisional. Length = 288 Score = 32.0 bits (74), Expect = 0.21 Identities = 10/19 (52%), Positives = 15/19 (78%) Query: 56 EILVLMGLSGAGKSTLLRS 74 ++++ GLSGAGKS LR+ Sbjct: 7 RLVIVTGLSGAGKSVALRA 25 >gnl|CDD|178835 PRK00064, recF, recombination protein F; Reviewed. Length = 361 Score = 32.1 bits (74), Expect = 0.21 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 10/67 (14%) Query: 188 APILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVS----HDINEAFRLGNRIAIM 243 APILL+D+ S LD R L + L L VF++ D+ + + Sbjct: 301 APILLLDDVASELDDGRRAALLERLKGL-----GAQVFITTTDLEDLADLLENAKIFHV- 354 Query: 244 EGGRIIQ 250 E G+I Sbjct: 355 EQGKITD 361 >gnl|CDD|183407 PRK12289, PRK12289, GTPase RsgA; Reviewed. Length = 352 Score = 31.9 bits (73), Expect = 0.24 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 3/37 (8%) Query: 46 IKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVV 82 ++A LE + +I V+ G SG GKS+L IN L P V Sbjct: 163 LEALLEQLRNKITVVAGPSGVGKSSL---INRLIPDV 196 >gnl|CDD|149613 pfam08619, Nha1_C, Alkali metal cation/H+ antiporter Nha1 C terminus. The C terminus of the plasma membrane Nha1 antiporter plays an important role in the immediate cell response to hypo-osmotic shock which prevents an execessive loss of ions and water. This domain is found with pfam00999. Length = 425 Score = 31.7 bits (72), Expect = 0.28 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 9/65 (13%) Query: 27 RYSIKKHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEV 86 RY I H K S V +A L +GL G K +R I L P R EV Sbjct: 263 RYKINPHKKPERPRSNSVVSRA---------LSWVGLKGMTKHDFIRQIRNLDPKARREV 313 Query: 87 LVDTD 91 +++++ Sbjct: 314 VLESN 318 >gnl|CDD|185549 PTZ00311, PTZ00311, phosphoenolpyruvate carboxykinase; Provisional. Length = 561 Score = 31.6 bits (72), Expect = 0.32 Identities = 11/19 (57%), Positives = 15/19 (78%) Query: 53 KKGEILVLMGLSGAGKSTL 71 KKG++ + GLSG GK+TL Sbjct: 254 KKGDVTLFFGLSGTGKTTL 272 >gnl|CDD|132282 TIGR03238, dnd_assoc_3, dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. Length = 504 Score = 31.0 bits (70), Expect = 0.50 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 10/76 (13%) Query: 45 VIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANV 104 ++K N E+ +L L G SG GKS +L N E +D F +P Sbjct: 22 LVKFNKELPSSSLLFLCGSSGDGKSEILAE-NKRKFSEGYEFFLDATHSF-SP------- 72 Query: 105 LRKLRMHTVSMVFQQF 120 K M T+ +F F Sbjct: 73 -NKNAMETLDEIFDGF 87 >gnl|CDD|167016 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional. Length = 1809 Score = 31.0 bits (70), Expect = 0.51 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 8/74 (10%) Query: 190 ILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVFVSHDI------NEAFRLGNRIAIM 243 + L+DE +SLD + L +L L L +++++ HD + +G + Sbjct: 1723 LFLLDEIATSLDNQQKSALLVQLRTLV-SLGHSVIYIDHDPALLKQADYLIEMG-PGSGK 1780 Query: 244 EGGRIIQCGTPQEI 257 GG+I+ G P++I Sbjct: 1781 TGGKILFSGPPKDI 1794 Score = 28.6 bits (64), Expect = 2.3 Identities = 11/22 (50%), Positives = 17/22 (77%) Query: 50 LEVKKGEILVLMGLSGAGKSTL 71 +E EI++L G+SG+GKS+L Sbjct: 21 IEFCPREIVLLTGVSGSGKSSL 42 >gnl|CDD|129002 smart00763, AAA_PrkA, PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain. Length = 361 Score = 30.7 bits (70), Expect = 0.58 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 13/71 (18%) Query: 17 ETSNKIRKRSRYSIKKHDKVSEYGMVSAV---------IKANLEVKKGEILVLMGLSGAG 67 + R RY HD +GM A+ LE +K +IL L+G G G Sbjct: 35 DVVENNRGIKRYRFFDHDF---FGMEEAIERFVNYFKSAAQGLEERK-QILYLLGPVGGG 90 Query: 68 KSTLLRSINGL 78 KS+L+ + Sbjct: 91 KSSLVECLKRG 101 >gnl|CDD|178968 PRK00300, gmk, guanylate kinase; Provisional. Length = 205 Score = 30.4 bits (70), Expect = 0.75 Identities = 12/21 (57%), Positives = 18/21 (85%) Query: 53 KKGEILVLMGLSGAGKSTLLR 73 ++G ++VL G SGAGKSTL++ Sbjct: 3 RRGLLIVLSGPSGAGKSTLVK 23 >gnl|CDD|181788 PRK09344, PRK09344, phosphoenolpyruvate carboxykinase; Provisional. Length = 526 Score = 29.8 bits (68), Expect = 0.95 Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 1/24 (4%) Query: 48 ANLEVKKGEILVLMGLSGAGKSTL 71 AN+ ++G++ + GLSG GK+TL Sbjct: 219 ANVG-EEGDVALFFGLSGTGKTTL 241 >gnl|CDD|183417 PRK12299, obgE, GTPase CgtA; Reviewed. Length = 335 Score = 30.0 bits (69), Expect = 0.95 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 19/51 (37%) Query: 60 LMGLSGAGKSTLLRSING------------LAP---VVRGEVLVDTDKGFV 95 L+GL AGKSTL+ +++ L P VVR VD K FV Sbjct: 163 LVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVR----VDDYKSFV 209 >gnl|CDD|163179 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria. Length = 650 Score = 30.0 bits (68), Expect = 0.98 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%) Query: 49 NLEVKKGEILVLMG-LSGAGKSTLLRSI 75 +L + ++L+G L+GAGK+TLL +I Sbjct: 21 DLSPSSPKPIILIGGLNGAGKTTLLDAI 48 >gnl|CDD|168091 PRK05541, PRK05541, adenylylsulfate kinase; Provisional. Length = 176 Score = 30.0 bits (68), Expect = 1.1 Identities = 7/25 (28%), Positives = 17/25 (68%) Query: 51 EVKKGEILVLMGLSGAGKSTLLRSI 75 G ++ + GL+G+GK+T+ +++ Sbjct: 3 MKPNGYVIWITGLAGSGKTTIAKAL 27 >gnl|CDD|179661 PRK03846, PRK03846, adenylylsulfate kinase; Provisional. Length = 198 Score = 29.5 bits (67), Expect = 1.2 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 3/32 (9%) Query: 43 SAVIKANLEVKKGE---ILVLMGLSGAGKSTL 71 V KA E G +L GLSG+GKST+ Sbjct: 9 HPVTKAQREQLHGHKGVVLWFTGLSGSGKSTV 40 >gnl|CDD|116881 pfam08298, AAA_PrkA, PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain. Length = 358 Score = 29.7 bits (67), Expect = 1.2 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 11/57 (19%) Query: 29 SIKKHDKVSE-YGMVSAVIK---------ANLEVKKGEILVLMGLSGAGKSTLLRSI 75 IK++ ++ +GM + + LE +K +IL L+G G GKS+L + Sbjct: 50 VIKRYPAFADFFGMEETIERIVNYFRHAAQGLEERK-QILYLLGPVGGGKSSLAERL 105 >gnl|CDD|182226 PRK10078, PRK10078, ribose 1,5-bisphosphokinase; Provisional. Length = 186 Score = 29.3 bits (66), Expect = 1.4 Identities = 10/26 (38%), Positives = 17/26 (65%) Query: 55 GEILVLMGLSGAGKSTLLRSINGLAP 80 G+++ LMG SG+GK +LL ++ Sbjct: 2 GKLIWLMGPSGSGKDSLLAALRQREQ 27 >gnl|CDD|164820 PHA00520, PHA00520, packaging NTPase P4. Length = 330 Score = 29.5 bits (66), Expect = 1.5 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 6/87 (6%) Query: 6 VKFRDVDIVFGETSNKIRKRSRYSIKKHDKVSEYGMVSAVIKANLEVKKGE--ILVLMGL 63 + F D+ E+ K+ R + S + A + + E + V++G Sbjct: 74 IGFHKGDVAVVESQVKVV-RPGHRGWDVIITSVLTVACAPVVHRWIGHRIESGVEVVVGG 132 Query: 64 SGAGKSTLLRSINGLAPVVRGEVLVDT 90 +G+GK+ LL N LAP V G Sbjct: 133 TGSGKTPLL---NALAPDVGGGDKYAV 156 >gnl|CDD|179157 PRK00889, PRK00889, adenylylsulfate kinase; Provisional. Length = 175 Score = 29.2 bits (66), Expect = 1.6 Identities = 9/20 (45%), Positives = 14/20 (70%) Query: 52 VKKGEILVLMGLSGAGKSTL 71 ++G + GLSGAGK+T+ Sbjct: 1 KQRGVTVWFTGLSGAGKTTI 20 >gnl|CDD|177823 PLN02165, PLN02165, adenylate isopentenyltransferase. Length = 334 Score = 29.0 bits (65), Expect = 1.7 Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 4/40 (10%) Query: 53 KKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDK 92 K +++V+MG +G+GKS L S++ LA E+ +++DK Sbjct: 41 CKDKVVVIMGATGSGKSRL--SVD-LATRFPSEI-INSDK 76 >gnl|CDD|178984 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed. Length = 943 Score = 29.3 bits (67), Expect = 1.8 Identities = 10/23 (43%), Positives = 19/23 (82%) Query: 49 NLEVKKGEILVLMGLSGAGKSTL 71 +L++ + +++V GLSG+GKS+L Sbjct: 20 DLDIPRDKLVVFTGLSGSGKSSL 42 Score = 28.5 bits (65), Expect = 2.9 Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 30/122 (24%) Query: 170 LSGGMKQRVGFARAF---ATGAPILLMDEPFSSL---DPLIRMRLQDELLALQRKLKK-- 221 LSGG QRV A+ +TG + ++DEP + L D IR +L L L R + K Sbjct: 831 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFED--IR-KL---LEVLHRLVDKGN 884 Query: 222 TIVFVSHD---INEAFRL-------GNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFIQ 271 T+V + H+ I A + G+ GG I+ GTP+E+ A+ Y +++ Sbjct: 885 TVVVIEHNLDVIKTADWIIDLGPEGGDG-----GGEIVATGTPEEVAKVEAS-YTGRYLK 938 Query: 272 KL 273 + Sbjct: 939 PV 940 Score = 27.0 bits (61), Expect = 6.8 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 8/62 (12%) Query: 206 MRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRI------AIMEGGRIIQCGTPQEIIL 259 RL + L L R L T++ V HD + R + I A + GG ++ GTP+EI+ Sbjct: 528 DRLIETLKHL-RDLGNTLIVVEHD-EDTIRAADYIVDIGPGAGVHGGEVVASGTPEEIMK 585 Query: 260 HP 261 +P Sbjct: 586 NP 587 >gnl|CDD|151168 pfam10662, PduV-EutP, Ethanolamine utilisation - propanediol utilisation. Members of this family function in ethanolamine and propanediol degradation pathways, however the exact roles of these proteins is poorly understood. Length = 143 Score = 29.1 bits (66), Expect = 1.8 Identities = 10/21 (47%), Positives = 17/21 (80%) Query: 58 LVLMGLSGAGKSTLLRSINGL 78 ++L+G SG GK+TL +++NG Sbjct: 4 IMLIGRSGCGKTTLTQALNGE 24 >gnl|CDD|161774 TIGR00224, pckA, phosphoenolpyruvate carboxykinase (ATP). Involved in the gluconeogenesis pathway. It converts oxaloacetic acid to phosphoenolpyruvate using ATP. Enzyme is a monomer. The reaction is also catalysed by phosphoenolpyruvate carboxykinase (GTP) (EC 4.1.1.32) using GTP instead of ATP, described in PROSITE:PDOC00421. Length = 532 Score = 29.1 bits (65), Expect = 1.9 Identities = 10/19 (52%), Positives = 15/19 (78%) Query: 53 KKGEILVLMGLSGAGKSTL 71 +KG++ + GLSG GK+TL Sbjct: 231 EKGDVALFFGLSGTGKTTL 249 >gnl|CDD|162989 TIGR02729, Obg_CgtA, Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. Length = 329 Score = 28.9 bits (66), Expect = 2.0 Identities = 9/16 (56%), Positives = 13/16 (81%) Query: 60 LMGLSGAGKSTLLRSI 75 L+GL AGKSTL+ ++ Sbjct: 162 LVGLPNAGKSTLISAV 177 >gnl|CDD|181957 PRK09563, rbgA, GTPase YlqF; Reviewed. Length = 287 Score = 28.6 bits (65), Expect = 2.2 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 14/70 (20%) Query: 11 VDIVFGETSNKIRKRSRYSIK-KHDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKS 69 ++ G+ KI K ++ +K K+++ GM I+A +++G+ GKS Sbjct: 86 INAKKGQGVKKILKAAKKLLKEKNERRKAKGMRPRAIRA----------MIIGIPNVGKS 135 Query: 70 TLLRSINGLA 79 TL IN LA Sbjct: 136 TL---INRLA 142 >gnl|CDD|183416 PRK12298, obgE, GTPase CgtA; Reviewed. Length = 390 Score = 28.7 bits (65), Expect = 2.4 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 11/47 (23%) Query: 60 LMGLSGAGKSTLLRSINGLAPVVR-----------GEVLVDTDKGFV 95 L+GL AGKST +R+++ P V G V VD ++ FV Sbjct: 164 LLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFV 210 >gnl|CDD|163225 TIGR03348, VI_IcmF, type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. Length = 1169 Score = 28.5 bits (64), Expect = 2.5 Identities = 7/15 (46%), Positives = 13/15 (86%) Query: 59 VLMGLSGAGKSTLLR 73 +++G G+GK+TLL+ Sbjct: 115 LVIGPPGSGKTTLLQ 129 >gnl|CDD|129690 TIGR00602, rad24, checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 637 Score = 28.4 bits (63), Expect = 2.5 Identities = 11/24 (45%), Positives = 15/24 (62%) Query: 50 LEVKKGEILVLMGLSGAGKSTLLR 73 LE IL++ G SG GKST ++ Sbjct: 105 LENAPKRILLITGPSGCGKSTTIK 128 >gnl|CDD|132614 TIGR03575, selen_PSTK_euk, L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity. Length = 340 Score = 28.3 bits (63), Expect = 2.7 Identities = 12/19 (63%), Positives = 14/19 (73%) Query: 57 ILVLMGLSGAGKSTLLRSI 75 + VL GL AGKSTL RS+ Sbjct: 1 LCVLCGLPAAGKSTLARSL 19 >gnl|CDD|185512 PTZ00202, PTZ00202, tuzin; Provisional. Length = 550 Score = 28.6 bits (64), Expect = 2.8 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 10/37 (27%) Query: 57 ILVLMGLSGAGKSTLLRSINGLAPVVRGE----VLVD 89 I+V G G GKS+L RS VR E V VD Sbjct: 288 IVVFTGFRGCGKSSLCRS------AVRKEGMPAVFVD 318 >gnl|CDD|130724 TIGR01663, PNK-3'Pase, polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78. Length = 526 Score = 28.5 bits (63), Expect = 2.8 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 4/36 (11%) Query: 56 EILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTD 91 E+++ +G GAGKS + P G V+ D Sbjct: 370 EMVIAVGFPGAGKSHFCKKF--FQP--AGYKHVNAD 401 >gnl|CDD|148176 pfam06414, Zeta_toxin, Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid. Length = 191 Score = 28.4 bits (64), Expect = 3.0 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 6/67 (8%) Query: 57 ILVLM-GLSGAGKSTLLR-SINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKLRMHTVS 114 + VL+ G GAGK+ L R + L V +D D+ + Y D + L+K S Sbjct: 13 VAVLLGGQPGAGKTELARALLEELGG--GNVVRIDPDE--LRTYHPDYDELQKADPKDAS 68 Query: 115 MVFQQFA 121 + Q A Sbjct: 69 ELTQPDA 75 >gnl|CDD|132307 TIGR03263, guanyl_kin, guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. Length = 180 Score = 28.2 bits (64), Expect = 3.0 Identities = 10/19 (52%), Positives = 15/19 (78%) Query: 55 GEILVLMGLSGAGKSTLLR 73 G ++V+ G SG GKSTL++ Sbjct: 1 GLLIVISGPSGVGKSTLVK 19 >gnl|CDD|180730 PRK06851, PRK06851, hypothetical protein; Provisional. Length = 367 Score = 28.4 bits (64), Expect = 3.2 Identities = 10/19 (52%), Positives = 13/19 (68%) Query: 57 ILVLMGLSGAGKSTLLRSI 75 I +L G G GKSTL++ I Sbjct: 32 IFILKGGPGTGKSTLMKKI 50 >gnl|CDD|131096 TIGR02041, CysI, sulfite reductase (NADPH) hemoprotein, beta-component. In cyanobacteria and plant species, sulfite reductase ferredoxin (EC 1.8.7.1) catalyzes the reduction of sulfite to sulfide. Length = 541 Score = 28.2 bits (63), Expect = 3.4 Identities = 9/37 (24%), Positives = 22/37 (59%) Query: 299 KISRQMPLIDIIDMVADNLGKIGVVEDDRIVGIITAI 335 K +P I+ +D+ A++LG + + ++ +++G I Sbjct: 199 KTGVVIPPINDVDVYANDLGFVAIADNGKLIGFNVLI 235 >gnl|CDD|178349 PLN02748, PLN02748, tRNA dimethylallyltransferase. Length = 468 Score = 27.9 bits (62), Expect = 3.6 Identities = 9/19 (47%), Positives = 15/19 (78%) Query: 53 KKGEILVLMGLSGAGKSTL 71 K +++V+MG +G+GKS L Sbjct: 20 GKAKVVVVMGPTGSGKSKL 38 >gnl|CDD|180124 PRK05537, PRK05537, bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated. Length = 568 Score = 28.1 bits (63), Expect = 3.8 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%) Query: 53 KKGEILVLMGLSGAGKSTLLRSINGLAPVVRGE--VLVDTD 91 K+G + GLSGAGKST+ +++ +RG L+D D Sbjct: 390 KQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGD 430 >gnl|CDD|150482 pfam09818, ABC_ATPase, Predicted ATPase of the ABC class. Members of this family include various bacterial predicted ABC class ATPases. Length = 447 Score = 27.9 bits (63), Expect = 3.9 Identities = 14/44 (31%), Positives = 21/44 (47%) Query: 171 SGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLA 214 SG Q A GA +LL+DE S+ + +IR L++ Sbjct: 323 SGSTSQAANIQEALEAGASLLLIDEDTSATNFMIRDERMQALVS 366 >gnl|CDD|182935 PRK11059, PRK11059, regulatory protein CsrD; Provisional. Length = 640 Score = 27.9 bits (63), Expect = 4.0 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 10/47 (21%) Query: 194 DEPFS---SLDPLIRMR----LQDELLALQRKLKKTIVFVSHDINEA 233 +E S S+D L+ L+D LL R +K ++F ++ EA Sbjct: 483 EENLSINLSVDSLLSRAFQRWLRDTLLQCPRSQRKRLIF---ELAEA 526 >gnl|CDD|180975 PRK07429, PRK07429, phosphoribulokinase; Provisional. Length = 327 Score = 28.1 bits (63), Expect = 4.1 Identities = 9/19 (47%), Positives = 13/19 (68%) Query: 57 ILVLMGLSGAGKSTLLRSI 75 +L + G SG GK+T LR + Sbjct: 10 LLGVAGDSGCGKTTFLRGL 28 >gnl|CDD|178887 PRK00131, aroK, shikimate kinase; Reviewed. Length = 175 Score = 27.8 bits (63), Expect = 4.1 Identities = 11/18 (61%), Positives = 13/18 (72%) Query: 53 KKGEILVLMGLSGAGKST 70 KG +VL+G GAGKST Sbjct: 2 LKGPNIVLIGFMGAGKST 19 >gnl|CDD|162028 TIGR00763, lon, ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock. Length = 775 Score = 28.0 bits (63), Expect = 4.1 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 5/56 (8%) Query: 21 KIRKRSRYSIKK-HDKVSEYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSI 75 +I Y +KK +++ EY V + KG IL L+G G GK++L +SI Sbjct: 316 EILDEDHYGLKKVKERILEYLAVQKLRGK----MKGPILCLVGPPGVGKTSLGKSI 367 >gnl|CDD|129547 TIGR00455, apsK, adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment. Length = 184 Score = 27.8 bits (62), Expect = 4.4 Identities = 10/18 (55%), Positives = 15/18 (83%) Query: 54 KGEILVLMGLSGAGKSTL 71 +G ++ L GLSG+GKST+ Sbjct: 17 RGVVIWLTGLSGSGKSTI 34 >gnl|CDD|129576 TIGR00485, EF-Tu, translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. Length = 394 Score = 27.8 bits (62), Expect = 4.4 Identities = 12/26 (46%), Positives = 14/26 (53%) Query: 233 AFRLGNRIAIMEGGRIIQCGTPQEII 258 A G R AI EGGR + G +II Sbjct: 368 ALEQGMRFAIREGGRTVGAGVVSKII 393 >gnl|CDD|181256 PRK08154, PRK08154, anaerobic benzoate catabolism transcriptional regulator; Reviewed. Length = 309 Score = 27.6 bits (62), Expect = 4.5 Identities = 10/12 (83%), Positives = 11/12 (91%) Query: 60 LMGLSGAGKSTL 71 L+GL GAGKSTL Sbjct: 138 LIGLRGAGKSTL 149 >gnl|CDD|163008 TIGR02768, TraA_Ti, Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer. Length = 744 Score = 27.8 bits (62), Expect = 4.7 Identities = 10/24 (41%), Positives = 17/24 (70%) Query: 53 KKGEILVLMGLSGAGKSTLLRSIN 76 G+I V++G +G GKST+L++ Sbjct: 366 GSGDIAVVVGRAGTGKSTMLKAAR 389 >gnl|CDD|179227 PRK01117, PRK01117, adenylosuccinate synthetase; Provisional. Length = 430 Score = 27.7 bits (63), Expect = 5.1 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%) Query: 210 DELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEGG 246 DE L +LK + S +N+A + G R+ + EG Sbjct: 188 DEYLEYAERLKPYVTDTSLLLNDALKAGKRV-LFEGA 223 >gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional. Length = 895 Score = 27.2 bits (60), Expect = 6.3 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 6/50 (12%) Query: 167 INMLSGGMKQRVGFARAFATG------APILLMDEPFSSLDPLIRMRLQD 210 I+ LSGG K V FA A +L+MDEP + LD R L+D Sbjct: 799 IDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKD 848 >gnl|CDD|181545 PRK08742, PRK08742, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional. Length = 472 Score = 27.2 bits (60), Expect = 6.5 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 6/67 (8%) Query: 274 NPITALVAADVMRVCSIDDESNIVHKISRQMPLIDIIDMVADNLGKIGVVEDDRIVGIIT 333 NP+ A + + + DD I+R P + +A +G+ V D R G++ Sbjct: 346 NPLACAAALATLDIFADDD------VIARNQPTAARMTQLAAQIGEHPHVADVRQAGMVV 399 Query: 334 AIDIVRG 340 A ++ RG Sbjct: 400 AFELTRG 406 >gnl|CDD|162162 TIGR01026, fliI_yscN, ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. Length = 440 Score = 27.3 bits (61), Expect = 6.7 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 2/40 (5%) Query: 45 VIKANLEVKKGEILVLMGLSGAGKSTLLRSI--NGLAPVV 82 I L V KG+ + + SG GKSTLL I N A V Sbjct: 153 SIDGLLTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVN 192 >gnl|CDD|161778 TIGR00231, small_GTP, small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. Length = 161 Score = 27.3 bits (61), Expect = 6.8 Identities = 8/18 (44%), Positives = 12/18 (66%) Query: 58 LVLMGLSGAGKSTLLRSI 75 +V++G GKSTLL + Sbjct: 4 IVIVGDPNVGKSTLLNRL 21 >gnl|CDD|181006 PRK07505, PRK07505, hypothetical protein; Provisional. Length = 402 Score = 27.3 bits (61), Expect = 6.9 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 12/70 (17%) Query: 204 IRMRLQDELLALQRKLKKTI-VFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEII---- 258 + L +EL LQ+KL+ I +F S E G+ + I R+I G I Sbjct: 296 AEIHLSEELDQLQQKLQNNIALFDSLIPTEQS--GSFLPI----RLIYIGDEDTAIKAAK 349 Query: 259 -LHPANCYVS 267 L Y S Sbjct: 350 QLLDRGFYTS 359 >gnl|CDD|129024 smart00788, Adenylsucc_synt, Adenylosuccinate synthetase. Adenylosuccinate synthetase plays an important role in purine biosynthesis, by catalyzing the GTP-dependent conversion of IMP and aspartic acid to AMP. Adenylosuccinate synthetase has been characterized from various sources ranging from Escherichia coli (gene purA) to vertebrate tissues. In vertebrates, two isozymes are present - one involved in purine biosynthesis and the other in the purine nucleotide cycle. The crystal structure of adenylosuccinate synthetase from E. coli reveals that the dominant structural element of each monomer of the homodimer is a central beta-sheet of 10 strands. The first nine strands of the sheet are mutually parallel with right-handed crossover connections between the strands. The 10th strand is antiparallel with respect to the first nine strands. In addition, the enzyme has two antiparallel beta-sheets, comprised of two strands and three strands each, 11 alpha-helices and two short 3/10-helices. Further, it has been suggested that the similarities in the GTP-binding domains of the synthetase and the p21ras protein are an example of convergent evolution of two distinct families of GTP-binding proteins PUBMED:8244965. Structures of adenylosuccinate synthetase from Triticum aestivum and Arabidopsis thaliana when compared with the known structures from E. coli reveals that the overall fold is very similar to that of the E. coli protein PUBMED:10669609. Length = 421 Score = 27.1 bits (61), Expect = 7.0 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Query: 200 LDPLIRMRLQDELLALQRKLKKTIVFVSHDINEAFRLGNRIAIMEG 245 +P+ + +ELL +LK +V VS +N+A + G ++ + EG Sbjct: 176 AEPVDVEEILEELLEYAERLKPYVVDVSELLNDALKAGKKV-LFEG 220 >gnl|CDD|161735 TIGR00157, TIGR00157, ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). Length = 245 Score = 27.0 bits (60), Expect = 7.4 Identities = 10/37 (27%), Positives = 18/37 (48%) Query: 51 EVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVL 87 E + I V G SG GKS+L+ +++ ++ Sbjct: 116 EALQNRISVFAGQSGVGKSSLINALDPSVKQQVNDIS 152 >gnl|CDD|178207 PLN02597, PLN02597, phosphoenolpyruvate carboxykinase [ATP]. Length = 555 Score = 27.1 bits (60), Expect = 7.5 Identities = 10/19 (52%), Positives = 14/19 (73%) Query: 53 KKGEILVLMGLSGAGKSTL 71 K G++ + GLSG GK+TL Sbjct: 244 KDGDVALFFGLSGTGKTTL 262 >gnl|CDD|162220 TIGR01137, cysta_beta, cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven. Length = 454 Score = 27.1 bits (60), Expect = 8.1 Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 8/51 (15%) Query: 299 KISRQMPLIDIIDMVADNLGKI-------GVVEDDRIVGIITAIDIVRGLS 342 +S++ I + ++D L K V E+ + +G++T ID++ L+ Sbjct: 405 VMSKKFIQIGEGEKLSD-LSKFLEKNSSAIVTEEGKPIGVVTKIDLLSFLA 454 >gnl|CDD|162806 TIGR02322, phosphon_PhnN, phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. Length = 179 Score = 26.9 bits (60), Expect = 8.4 Identities = 10/18 (55%), Positives = 14/18 (77%) Query: 55 GEILVLMGLSGAGKSTLL 72 G ++ ++G SGAGK TLL Sbjct: 1 GRLIYVVGPSGAGKDTLL 18 >gnl|CDD|183183 PRK11537, PRK11537, putative GTP-binding protein YjiA; Provisional. Length = 318 Score = 27.0 bits (60), Expect = 8.7 Identities = 11/17 (64%), Positives = 13/17 (76%) Query: 59 VLMGLSGAGKSTLLRSI 75 +L G GAGK+TLLR I Sbjct: 8 LLTGFLGAGKTTLLRHI 24 >gnl|CDD|129465 TIGR00368, TIGR00368, Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain. Length = 499 Score = 26.7 bits (59), Expect = 9.5 Identities = 12/36 (33%), Positives = 20/36 (55%) Query: 55 GEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDT 90 G L+L G G+GK+ L + G+ P + E ++T Sbjct: 211 GHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIET 246 >gnl|CDD|131580 TIGR02528, EutP, ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. Length = 142 Score = 26.6 bits (59), Expect = 9.6 Identities = 7/22 (31%), Positives = 14/22 (63%) Query: 58 LVLMGLSGAGKSTLLRSINGLA 79 ++ +G G GK+TL +++ G Sbjct: 3 IMFIGSVGCGKTTLTQALQGEE 24 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.324 0.140 0.402 Gapped Lambda K H 0.267 0.0636 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 5,757,663 Number of extensions: 385404 Number of successful extensions: 1943 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1598 Number of HSP's successfully gapped: 369 Length of query: 348 Length of database: 5,994,473 Length adjustment: 94 Effective length of query: 254 Effective length of database: 3,963,321 Effective search space: 1006683534 Effective search space used: 1006683534 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 58 (26.3 bits)