HHsearch alignment for GI: 254780341 and conserved domain: COG0395
>COG0395 UgpE ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].
Probab=99.58 E-value=3.9e-13 Score=97.58 Aligned_cols=184 Identities=24% Similarity=0.307 Sum_probs=132.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HHHCCCHHHHHHHHCCCCCHHHHHHHHC---CCCH--HHHHHH
Q ss_conf 844999999999999997887666776421012112-3202350345442012021011000000---2101--788999
Q gi|254780341|r 88 GYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPR-FYSIIRLFLDSMQTIPTFVYLIPALVLF---GLGM--VPGIVA 161 (281)
Q Consensus 88 g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~~-~~~~~~p~l~~~~~iP~~v~l~p~i~~f---G~g~--~~~i~a 161 (281)
T Consensus 70 ~~~~~~~NS~iva~~~t~l~~~~~~laaYalar~~f~g~~~l~~~~l~~~m~P~~v~~iPl~~~~~~lgl~nt~~glil~ 149 (281)
T COG0395 70 GFLRYFLNSLIVAVGSTVLSLLLSSLAAYALARFRFKGRKLLFLLLLLTLMLPAQVLLIPLYLLMRKLGLLNTYWGLILP 149 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 89999998999999999999999999899999853360999999999999856999999899999982661047999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCC---
Q ss_conf 999887899999588741299899999996078820101223688626799999999999999999999997-0588---
Q gi|254780341|r 162 TIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALV-GSNG--- 237 (281)
Q Consensus 162 ~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~i-g~~G--- 237 (281)
T Consensus 150 ~~~~~~pf~ifl~~~ff~~iP~eLeEAA~iDGas~~~if~kI~lPl~~P~iaa~aI~~fi~~WN~fl~pli~~~~~~~~t 229 (281)
T COG0395 150 YLAFGLPFAIFLLRQFFRTIPKELEEAARIDGASEFQIFFKIVLPLAKPGLAAVAIFTFIGAWNEFLWPLILLSSPNLLT 229 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99998889999999999869899999999828965789999998703789999999999999999999999918876421
Q ss_pred --HHHHHHHH-HHHHCHHHHHHHHHHH----HHHHHHHHHH
Q ss_conf --04999999-9740789899999999----9999999999
Q gi|254780341|r 238 --LGVPVLRA-LNTVDIGRGFESGLCI----VILAIILDRL 271 (281)
Q Consensus 238 --LG~~i~~a-~~~~~~~~~~~~~l~I----v~lai~lDri 271 (281)
T Consensus 230 l~v~l~~~~~~~~~~~w~~~~A~~vi~~lP~li~f~~~Qr~ 270 (281)
T COG0395 230 LPVGLNSFGGSEGGTDWGLIMAAAVLAILPVLIVFLFFQRY 270 (281)
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999996343356668999999999999999999999999