HHsearch alignment for GI: 254780341 and conserved domain: COG4174
>COG4174 ABC-type uncharacterized transport system, permease component [General function prediction only].
Probab=98.53 E-value=2.4e-07 Score=62.71 Aligned_cols=182 Identities=23% Similarity=0.293 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCC--HHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCCH-------------------
Q ss_conf 9999999978876667764210121--1232023503454420120210110000002101-------------------
Q gi|254780341|r 97 LSLVLVSTFISMFIGVPLGVLAAWY--PRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGM------------------- 155 (281)
Q Consensus 97 l~~~~~~~~ia~~igiplGi~~~~~--~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g~------------------- 155 (281)
T Consensus 136 iSlGlw~tli~YliSIPLGI~KAv~~gs~fDvwsS~viiigyAiP~FlfailLiVlFaGGsy~dwFPLRGLvSdnf~~L~ 215 (364)
T COG4174 136 ISLGLWSTLIIYLISIPLGIRKAVRNGSRFDVWSSAVIIIGYAIPAFLFAILLIVLFAGGSYFDWFPLRGLVSDNFDQLS 215 (364)
T ss_pred EEHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHCC
T ss_conf 87689999999997433328888747984202211368873242799999999974158761012001463458834347
Q ss_pred ------------HHHHHHHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ------------788999999887899999588-7412998999999960788201012236886267999999999999
Q gi|254780341|r 156 ------------VPGIVATIVFSIPTSVRLTRL-GIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIML 222 (281)
Q Consensus 156 ------------~~~i~a~~i~~~~pi~~~t~~-gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~ 222 (281)
T Consensus 216 ~~~ki~DYlWH~tLPv~a~v~g~FAt~TlLtKNSFldEi~KqYVvTARAKGlserrvly~HVFRNAMLlviaGfP~afis 295 (364)
T COG4174 216 WYGKITDYLWHITLPVLALVLGGFATLTLLTKNSFLDEIRKQYVVTARAKGLSERRVLYKHVFRNAMLLVIAGFPAAFIS 295 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 27888999999888899999866777888753058999764526632315885545269988634278876178099999
Q ss_pred HH-HH-HHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q ss_conf 99-99-999999705880499999997407898999999999999999----9999987421
Q gi|254780341|r 223 SL-SM-VVVTALVGSNGLGVPVLRALNTVDIGRGFESGLCIVILAIIL----DRLFSIPDPR 278 (281)
Q Consensus 223 ~l-~~-vvia~~ig~~GLG~~i~~a~~~~~~~~~~~~~l~Iv~lai~l----Dri~~~~~~r 278 (281)
T Consensus 296 ~FFTgSLLIE~iFSLdGlGllgyea~v~RDYPvvfgtLyIftL~GL~~~lisDl~yt~vDPR 357 (364)
T COG4174 296 MFFTGSLLIEVIFSLDGLGLLGYEAVVSRDYPVVFGTLYIFTLIGLLVSLISDLTYTLVDPR 357 (364)
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHEEEEECCC
T ss_conf 99712479999872366211106878647886421668999999999999754417864575