HHsearch alignment for GI: 254780341 and conserved domain: COG4209
>COG4209 LplB ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism].
Probab=98.89 E-value=1.9e-08 Score=69.30 Aligned_cols=188 Identities=20% Similarity=0.304 Sum_probs=111.8
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHCCCHHHHHHHHCCCCC-HHHHH---HHHCCC--CH
Q ss_conf 2134844999999999999997887666776421012--1123202350345442012021-01100---000021--01
Q gi|254780341|r 84 IIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAW--YPRFYSIIRLFLDSMQTIPTFV-YLIPA---LVLFGL--GM 155 (281)
Q Consensus 84 i~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~--~~~~~~~~~p~l~~~~~iP~~v-~l~p~---i~~fG~--g~ 155 (281)
T Consensus 72 F~~~~ff~i~rNTl~~s~~~li~gf~~pI~lAillnElr~~~~kk~----~QT~~y~PhFlSWVVv~~~v~~fls~d~Gi 147 (309)
T COG4209 72 FSSPDFFIILRNTLLYSVLFLILGFPVPIILAILLNELRNKVFKKV----VQTISYLPHFLSWVVVSGFVFAFLSIDGGI 147 (309)
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHCHHEEEHHHHHHHHHHHCCCCCH
T ss_conf 7187399999999999999999953799999999999987778888----766333000210030565788763667518
Q ss_pred HHHHHHHH------HHH----HHHHH-------------HHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 78899999------988----78999-------------99588741299899999996078820101223688626799
Q gi|254780341|r 156 VPGIVATI------VFS----IPTSV-------------RLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQI 212 (281)
Q Consensus 156 ~~~i~a~~------i~~----~~pi~-------------~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i 212 (281)
T Consensus 148 iN~ll~~~g~~pi~fl~~~~wf~~i~i~~~vWK~~G~~SIiylAai~~Idpt~YEAA~vDGA~rwqqiwhITlP~i~P~i 227 (309)
T COG4209 148 INQLLMSLGGDPINFLTNPDWFRPIIIFSSVWKGAGWNSIIYLAAIAGIDPTLYEAAMVDGASRWQQIWHITLPAIRPLI 227 (309)
T ss_pred HHHHHHHCCCCCEEHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHCCHHHHHHHH
T ss_conf 99999982898310215886026788789888423678899999997279999999980548877888821103231499
Q ss_pred HHHHHHHHHHHHHHHHHHH--HH--CCCCHHHHH--------HH-HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999999999999--97--058804999--------99-99740789899999999999999999999874210
Q gi|254780341|r 213 VASLTQTIMLSLSMVVVTA--LV--GSNGLGVPV--------LR-ALNTVDIGRGFESGLCIVILAIILDRLFSIPDPRD 279 (281)
Q Consensus 213 ~~Gi~~~~~~~l~~vvia~--~i--g~~GLG~~i--------~~-a~~~~~~~~~~~~~l~Iv~lai~lDri~~~~~~r~ 279 (281)
T Consensus 228 vIll----IL~iG~i~~~gFe~~yll~~~~~~~v~~vldtYVy~~gl~~Gd~s~sTAaGlf~svVg~iLl~~aN~iakr~ 303 (309)
T COG4209 228 VILL----ILNIGNIFNAGFELFYLLPNPSGYDVTEVLDTYVYRGGLVTGDYSYSTAAGLFQSVVGFILLFLANRIAKRF 303 (309)
T ss_pred HHHH----HHHHHHHHHCCHHHEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999----998523765372560660576687489899999998101357511899999999999999999999999970