HHsearch alignment for GI: 254780341 and conserved domain: COG4239
>COG4239 ABC-type uncharacterized transport system, permease component [General function prediction only].
Probab=98.89 E-value=3.2e-07 Score=61.99 Aligned_cols=174 Identities=21% Similarity=0.235 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHHCCC-CHHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHH---HHHHHHHHHHHHHHH
Q ss_conf 97887666776421012-11232023503454420120210110000002101788999999---887899999588741
Q gi|254780341|r 104 TFISMFIGVPLGVLAAW-YPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATIV---FSIPTSVRLTRLGII 179 (281)
Q Consensus 104 ~~ia~~igiplGi~~~~-~~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g~~~~i~a~~i---~~~~pi~~~t~~gl~ 179 (281)
T Consensus 151 T~~SaliGv~~GA~qGyfgg~vdL~~QRfIEvws~mP~lyllii~as~~~p~f~~ll~i~llf~Wm~lv~vvRaef--Lr 228 (341)
T COG4239 151 TLISALIGVLAGALQGYFGGWVDLLGQRFIEVWSGMPTLYLLIILASIFQPNFWWLLGIMLLFGWMSLVGVVRAEF--LR 228 (341)
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH--HH
T ss_conf 9999999998887753413004887705999984472999999999996854799999999999999999999999--98
Q ss_pred CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHCHHH
Q ss_conf 2998999999960788201012236886267999999999999999999999970------5880499999997407898
Q gi|254780341|r 180 STPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVG------SNGLGVPVLRALNTVDIGR 253 (281)
Q Consensus 180 ~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig------~~GLG~~i~~a~~~~~~~~ 253 (281)
T Consensus 229 ~Rn~dYvkAArAlGv~d~~Ii~rHilPnamvatlTflPf~l~~sitTltsLdFLgfglp~gspSLGELl~qgk~nlqapW 308 (341)
T COG4239 229 ARNLDYVKAARALGVSDRRIILRHILPNAMVATLTFLPFILSGSITTLTSLDFLGFGLPPGSPSLGELLNQGKNNLQAPW 308 (341)
T ss_pred HCCHHHHHHHHHCCCCCCEEEHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCH
T ss_conf 60268899999739886503021326298899999878987063323001666526999999678999997652477842
Q ss_pred -HHHHHHHH----HHHHHHHHHHHHHHHHHC
Q ss_conf -99999999----999999999999874210
Q gi|254780341|r 254 -GFESGLCI----VILAIILDRLFSIPDPRD 279 (281)
Q Consensus 254 -~~~~~l~I----v~lai~lDri~~~~~~r~ 279 (281)
T Consensus 309 lgit~fv~l~~~lslLvfIgea~Rdafdp~~ 339 (341)
T COG4239 309 LGITAFVVLSLLLSLLIFIGEAVRDAFDPRK 339 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 5588999999999999994299886315001