HHsearch alignment for GI: 254780341 and conserved domain: PRK09497
>PRK09497 potB spermidine/putrescine ABC transporter membrane protein; Reviewed.
Probab=99.86 E-value=5.1e-20 Score=138.96 Aligned_cols=196 Identities=18% Similarity=0.282 Sum_probs=147.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHCCCHHHHHHHHCCCCCHHHHHHHHC-------------
Q ss_conf 348449999999999999978876667764210121-123202350345442012021011000000-------------
Q gi|254780341|r 86 KQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWY-PRFYSIIRLFLDSMQTIPTFVYLIPALVLF------------- 151 (281)
Q Consensus 86 ~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~-~~~~~~~~p~l~~~~~iP~~v~l~p~i~~f------------- 151 (281)
T Consensus 58 ~~~~~~~l~nSl~~a~~~tvi~~~ig~~~A~~l~~~~~~~r~~~~~l~~~P~~~p~~v~~~~~~~~~~~~G~ln~~l~~l 137 (285)
T PRK09497 58 DPLYAEVLLHSLNMALIATLACLVLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLGTKGYLNEFLLWL 137 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHC
T ss_conf 38999999999999999999999999998886301675438999999999998799999999999814330788999981
Q ss_pred CC---------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 21---------017889999998878999995887412998999999960788201012236886267999999999999
Q gi|254780341|r 152 GL---------GMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIML 222 (281)
Q Consensus 152 G~---------g~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~ 222 (281)
T Consensus 138 g~~~~p~~~l~~~~~vii~~v~~~lPf~~l~l~a~l~~i~~~l~EAA~~lGAs~~~~F~~I~lPl~~Pgi~~~~il~fi~ 217 (285)
T PRK09497 138 GVIDTPIRIMFTESAVIIGLVYILLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLP 217 (285)
T ss_pred CCCCCCHHHHCCHHHHHHHHHEEECHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHEEHHEEEHHHHHHHHHHHHHHHHH
T ss_conf 57566235423498887875313120677437878840896899999875999789132022081089999999999999
Q ss_pred HHHHHHHHHHHCCCC---HHHHHHHH-HHHHCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999999999970588---04999999-974078989999999----999999999999987421059
Q gi|254780341|r 223 SLSMVVVTALVGSNG---LGVPVLRA-LNTVDIGRGFESGLC----IVILAIILDRLFSIPDPRDRI 281 (281)
Q Consensus 223 ~l~~vvia~~ig~~G---LG~~i~~a-~~~~~~~~~~~~~l~----Iv~lai~lDri~~~~~~r~~~ 281 (281)
T Consensus 218 s~~~F~~~~~lgG~~~~~l~~~i~~~~~~~~~~~~aaA~svil~~i~~~~~~i~~r~~k~~~kk~~~ 284 (285)
T PRK09497 218 AMGMFYVSDLLGGAKNLLIGNVIKSQFLNIRDWPFGAATSITLTIVMGLMLLVYYRASKLLNKKVEL 284 (285)
T ss_pred HHHHHHEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCC
T ss_conf 9887621001048975529999999998706906999999999999999999999999995301416