HHsearch alignment for GI: 254780341 and conserved domain: PRK09500
>PRK09500 potC spermidine/putrescine ABC transporter membrane protein; Reviewed.
Probab=99.87 E-value=3.1e-20 Score=140.26 Aligned_cols=197 Identities=23% Similarity=0.290 Sum_probs=161.0
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHCCCHHHHHHHHCCCCCHHHHHHHHC---C--CCHHH
Q ss_conf 213484499999999999999788766677642101211-23202350345442012021011000000---2--10178
Q gi|254780341|r 84 IIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYP-RFYSIIRLFLDSMQTIPTFVYLIPALVLF---G--LGMVP 157 (281)
Q Consensus 84 i~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~-~~~~~~~p~l~~~~~iP~~v~l~p~i~~f---G--~g~~~ 157 (281)
T Consensus 51 f~~~~~~~~~~nSl~ia~~~~~~~~~lg~~~A~~l~r~~~~~~~~~~~l~~~p~~~P~~v~~i~l~~~~~~~g~~~~~~~ 130 (257)
T PRK09500 51 MNNDSLLQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRGKKFVSGMLFVVMMSPDIVMAISLLVLFMLLGIQLGFWS 130 (257)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 87937999999999999999999999999999999752677456999999999997999999999999997351320999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-
Q ss_conf 8999999887899999588741299899999996078820101223688626799999999999999999999997058-
Q gi|254780341|r 158 GIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSN- 236 (281)
Q Consensus 158 ~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~~- 236 (281)
T Consensus 131 lil~~~~~~lP~~~~~i~~~l~~i~~~l~EAA~~lGAs~~~~f~~VilPl~~P~i~~~~il~F~~s~~ef~~~~~l~g~~ 210 (257)
T PRK09500 131 LLFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEVTILRKIILPLAMPAVAAGWLLSFTLSMDDVVVSSFVTGPS 210 (257)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99888885150279999999971796999999872999879636312984799999999999999999999999752899
Q ss_pred --CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf --80499999997407898999999999999999999998742105
Q gi|254780341|r 237 --GLGVPVLRALNTVDIGRGFESGLCIVILAIILDRLFSIPDPRDR 280 (281)
Q Consensus 237 --GLG~~i~~a~~~~~~~~~~~~~l~Iv~lai~lDri~~~~~~r~~ 280 (281)
T Consensus 211 ~~tlp~~i~~~~~~~~~~~~~Ala~il~~i~~~~~~l~~~l~r~~~ 256 (257)
T PRK09500 211 YEILPLKIYSMVKVGVSPEVNALATILLVLSLVLVILSQLLARDKT 256 (257)
T ss_pred CEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 6028999999987378759999999999999999999999866547