HHsearch alignment for GI: 254780341 and conserved domain: PRK09881
>PRK09881 ATP-dependent peptide transporter membrane subunit; Provisional.
Probab=99.73 E-value=1.1e-15 Score=112.96 Aligned_cols=188 Identities=23% Similarity=0.303 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999978876667764210121-12320235034544201202101100000021017889999998878999
Q gi|254780341|r 93 TTETLSLVLVSTFISMFIGVPLGVLAAWY-PRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATIVFSIPTSV 171 (281)
Q Consensus 93 ~~~Tl~~~~~~~~ia~~igiplGi~~~~~-~~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG~g~~~~i~a~~i~~~~pi~ 171 (281)
T Consensus 93 ~r~sL~i~l~~~~i~~~iG~~lG~~aGy~gG~~D~il~ri~Dv~~aiP~lll~i~l~~~~g~~~~~~il~i~l~~w~~~a 172 (296)
T PRK09881 93 SQQSILAGLVVVAIAGMIGSLLGCLSGVLGGRADAIIMRIMDIMLSIPSLVLTMALAAALGPSLFNAMLAIAIVRIPFYV 172 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999988881760766556777630158605777888765167516888999998799999
Q ss_pred HHHHH-HHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CCHHHHHHH
Q ss_conf 99588-74129989999999607882010122368862679999999999999999999999705------880499999
Q gi|254780341|r 172 RLTRL-GIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGS------NGLGVPVLR 244 (281)
Q Consensus 172 ~~t~~-gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~------~GLG~~i~~ 244 (281)
T Consensus 173 R~vR~~~l~i~~~~yV~AAr~~G~s~~~Ii~rhiLPni~~~liv~~~~~~~~aIl~ea~LsFLGlG~~pp~~sWG~mi~~ 252 (296)
T PRK09881 173 RLARGQALVVRQYTYVQAAKTFGASRWHLINWHILRNSLPPLIVQASLDIGSAILMAATLGFIGLGAQQPSAEWGAMVAN 252 (296)
T ss_pred HHHHHHHHHHHCCHHHHHHHHCCCCHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
T ss_conf 99999999996349999999839886785414276661889999999999999999999999037899999859999999
Q ss_pred HHHHHC--HHHHHHHHHHHHHHHH----HHHHHHHHHHHHCC
Q ss_conf 997407--8989999999999999----99999998742105
Q gi|254780341|r 245 ALNTVD--IGRGFESGLCIVILAI----ILDRLFSIPDPRDR 280 (281)
Q Consensus 245 a~~~~~--~~~~~~~~l~Iv~lai----~lDri~~~~~~r~~ 280 (281)
T Consensus 253 ~~~~~~~~~w~~~~Pg~~i~l~vl~~nllgdgLrd~ldPr~r 294 (296)
T PRK09881 253 GRNYVLDQWWYCAFPGAAILLTAVGFNLFGDGIRDLLDPKAG 294 (296)
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 999998772999999999999999999999999998196557