Query gi|254780341|ref|YP_003064754.1| proline/glycine betaine ABC transporter, permease protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 281
No_of_seqs 216 out of 3631
Neff 7.0
Searched_HMMs 23785
Date Mon May 30 09:34:07 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780341.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dhw_A D-methionine transport 99.9 4.3E-26 1.8E-30 174.2 12.3 190 89-278 9-217 (217)
2 2onk_C Molybdate/tungstate ABC 99.9 4.2E-22 1.8E-26 150.2 18.5 197 85-281 66-279 (284)
3 3d31_C Sulfate/molybdate ABC t 99.9 6E-22 2.5E-26 149.3 17.8 198 83-280 74-294 (295)
4 2r6g_F Maltose transport syste 99.7 6.5E-17 2.7E-21 119.0 15.1 195 85-279 269-512 (514)
5 2r6g_G Maltose transport syste 99.7 1.7E-15 7E-20 110.5 13.6 180 88-267 80-276 (296)
6 1umq_A Photosynthetic apparatu 31.1 20 0.00082 13.8 2.1 32 173-204 45-76 (81)
7 1ntc_A Protein (nitrogen regul 18.1 35 0.0015 12.3 1.3 31 174-204 56-86 (91)
8 1eto_A FIS, factor for inversi 16.1 39 0.0017 12.0 2.3 31 174-204 63-93 (98)
9 1i3j_A I-TEVI, intron-associat 12.8 48 0.002 11.4 0.9 23 182-204 83-105 (116)
10 1cii_A Colicin IA; bacteriocin 12.1 51 0.0021 11.3 2.6 10 88-97 540-549 (602)
No 1
>3dhw_A D-methionine transport system permease protein METI; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} SCOP: f.58.1.1
Probab=99.94 E-value=4.3e-26 Score=174.24 Aligned_cols=190 Identities=27% Similarity=0.388 Sum_probs=154.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--------HHHHHCCCHHHHHHHHCCCCCHHHH---H---HHHCCCC
Q ss_conf 449999999999999978876667764210121--------1232023503454420120210110---0---0000210
Q gi|254780341|r 89 YWQETTETLSLVLVSTFISMFIGVPLGVLAAWY--------PRFYSIIRLFLDSMQTIPTFVYLIP---A---LVLFGLG 154 (281)
Q Consensus 89 ~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~--------~~~~~~~~p~l~~~~~iP~~v~l~p---~---i~~fG~g 154 (281)
+++...+|+.....++.++.++|+|+|+++++. ++.++...++.+.++++|..+++.. . ...++.|
T Consensus 9 ~l~~~~~Tl~~a~~~~~~~~~ig~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~ 88 (217)
T 3dhw_A 9 LVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVIVGTSIG 88 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTGGGGGGGGGGTTCSSSCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTCCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999864443200899999999999999999999999999999999861236
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 17889999998878999995887412998999999960788201012236886267999999999999999999999970
Q gi|254780341|r 155 MVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVG 234 (281)
Q Consensus 155 ~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig 234 (281)
..+.+++..+++.|++.+++.+|++++|+++.|+||++|+|+||+++||.+|++.|++++|...+.+.++....+++++|
T Consensus 89 ~~~~ii~~~~~~~~~~~~~~~~~l~~i~~~~~eAA~~lGas~~q~f~~vilP~~~p~ii~~~~~~~~~~i~~~~i~~~ig 168 (217)
T 3dhw_A 89 LQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVG 168 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTTTHHHHHTCCTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCCSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999998679999999999985898999998718989899969741997899999999999999999999999998
Q ss_pred CCCHHHHHHHH-HHHHCHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q ss_conf 58804999999-974078989999999999----999999999987421
Q gi|254780341|r 235 SNGLGVPVLRA-LNTVDIGRGFESGLCIVI----LAIILDRLFSIPDPR 278 (281)
Q Consensus 235 ~~GLG~~i~~a-~~~~~~~~~~~~~l~Iv~----lai~lDri~~~~~~r 278 (281)
.+|+|+...+. .+..|.+...+..+.+.+ +....|++.++.+||
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~rR 217 (217)
T 3dhw_A 169 AGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTRK 217 (217)
T ss_dssp CCHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 8799999999999860089999999999999999999999999975699
No 2
>2onk_C Molybdate/tungstate ABC transporter, permease protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: f.58.1.1
Probab=99.90 E-value=4.2e-22 Score=150.23 Aligned_cols=197 Identities=21% Similarity=0.280 Sum_probs=163.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHCCCHHHHHHHHCCCCCHHHHHHHHC------------
Q ss_conf 13484499999999999999788766677642101211-23202350345442012021011000000------------
Q gi|254780341|r 85 IKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYP-RFYSIIRLFLDSMQTIPTFVYLIPALVLF------------ 151 (281)
Q Consensus 85 ~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~-~~~~~~~p~l~~~~~iP~~v~l~p~i~~f------------ 151 (281)
.+.++|+...+|+..+..++.++.++|+++|+++++++ +.++.++.++.....+|+.++.......+
T Consensus 66 ~~~~~~~~~~~Sl~~a~~s~~l~~~ig~~~a~~l~~~~~~~~~~~~~l~~~p~~iP~~v~~~~~~~~~~~~~~~~~~~~~ 145 (284)
T 2onk_C 66 SDPAVWKVVLTTYYAALISTLIAVIFGTPLAYILARKSFPGKSVVEGIVDLPVVIPHTVAGIALLVVFGSSGLIGSFSPL 145 (284)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSHHHHHHHHHHHHHSCHHHHHHHHHHHHSTTSTTTTTCSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 49799999999999999999999999999999999826448999999999787445144566665533122556762100
Q ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf --210178899999988789999958874129989999999607882010122368862679999999999999999999
Q gi|254780341|r 152 --GLGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVV 229 (281)
Q Consensus 152 --G~g~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvi 229 (281)
..+....+++.+...+|...+....+++++|+++.|+|+++|+|+||+++|+.+|.++|.++++...+...++.....
T Consensus 146 ~~~~~~~~iil~~~~~~~p~~~~~~~~~l~~i~~~l~eaA~~lGas~~~~~~~IilP~~~p~i~~~~il~f~~~~~~~~~ 225 (284)
T 2onk_C 146 KFVDALPGIVVAMLFVSVPIYINQAKEGFASVDVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISEFGA 225 (284)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEHEEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 03210699999988614650222343553158856899999759893530110249999999999999999999999999
Q ss_pred HHHHCCC--CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9997058--804999999974078989999999999999999999987421059
Q gi|254780341|r 230 TALVGSN--GLGVPVLRALNTVDIGRGFESGLCIVILAIILDRLFSIPDPRDRI 281 (281)
Q Consensus 230 a~~ig~~--GLG~~i~~a~~~~~~~~~~~~~l~Iv~lai~lDri~~~~~~r~~~ 281 (281)
..++|.+ .+...+....++.|.....+..+...++.+++.-+.+..++|+|.
T Consensus 226 ~~~l~~~~~~~~~~i~~~~~~~~~~~~~a~a~il~~i~l~~~~~~~~l~~r~~~ 279 (284)
T 2onk_C 226 VVVIAYYPMIAPTLIYERYLSEGLSAAMPVAAILILLSLAVFVALRIIVGREDV 279 (284)
T ss_dssp HHTTCCSSCCHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 998828985299999999980589999999999999999999999999971377
No 3
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: f.58.1.1
Probab=99.90 E-value=6e-22 Score=149.30 Aligned_cols=198 Identities=18% Similarity=0.223 Sum_probs=152.8
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHCCCHHHHHHHHCCCCCHHHHHHHHCC---------
Q ss_conf 2213484499999999999999788766677642101211-232023503454420120210110000002---------
Q gi|254780341|r 83 LIIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYP-RFYSIIRLFLDSMQTIPTFVYLIPALVLFG--------- 152 (281)
Q Consensus 83 ~i~~~g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~-~~~~~~~p~l~~~~~iP~~v~l~p~i~~fG--------- 152 (281)
...+.++|+...+|+.....+++++.++|+++|+++++++ +.++.++.+......+|+.+...+...+++
T Consensus 74 ~~~~~~~~~~i~~Tl~~a~~s~~i~~ilg~~~a~~l~~~~~~~~~~~~~l~~~p~~~p~~v~~~~~~~~~~~~g~~~~~~ 153 (295)
T 3d31_C 74 AAGNRSVISSIFLSLYAGFLATLLALLLGAPTGYILARFDFPGKRLVESIIDVPVVVPHTVAGIALLTVFGSRGLIGEPL 153 (295)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHGGGTSCHHHHHHHHHHHHSTTSTTTGGG
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf 98598999999999999999999999999999999996454358999999999999998889999999861246533210
Q ss_pred -------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -------1017889999998878999995887412998999999960788201012236886267999999999999999
Q gi|254780341|r 153 -------LGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLS 225 (281)
Q Consensus 153 -------~g~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~ 225 (281)
.+..+.+++.+.+.+|...+....+++++|+|+.|+|+++|+|+||+++||.+|.+.|.+++++..+...++.
T Consensus 154 ~~~~~~~~~~~~iii~~~~~~~p~~~~~~~~~l~~i~~~~~eAA~~~Gas~~~~~~~IiLP~~~p~i~~~~~l~f~~~~~ 233 (295)
T 3d31_C 154 ESYIQFRDALPGIVVAMLFVSMPYLANSAREGFKSVDPRLENAARSLGAPLWKAFFFVTLPLSARYLLIGSVMTWARAIS 233 (295)
T ss_dssp TTTCCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 10267125789999999998074432015788873152699999984999366323533998999999999999999999
Q ss_pred HHHHHHHHCCC--CHHHHHHHHHHHHCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHCC
Q ss_conf 99999997058--804999999974078989999999999999----99999998742105
Q gi|254780341|r 226 MVVVTALVGSN--GLGVPVLRALNTVDIGRGFESGLCIVILAI----ILDRLFSIPDPRDR 280 (281)
Q Consensus 226 ~vvia~~ig~~--GLG~~i~~a~~~~~~~~~~~~~l~Iv~lai----~lDri~~~~~~r~~ 280 (281)
...+.+++|.+ -+...++...+..|.+.+.+..+...++.+ +...+.+...+|+|
T Consensus 234 ~f~~~~~l~~~~~~~~~~i~~~~~~~~~~~a~a~a~il~ii~l~i~~~~~~L~~~~~~~~r 294 (295)
T 3d31_C 234 EFGAVVILAYYPMVGPTLIYDRFISYGLSASRPIAVLLILVTLSIFLVIRTLSAGWSIYDR 294 (295)
T ss_dssp CCHHHHHHHCTTCCHHHHHHHHHHHSTTTTTHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCC
T ss_conf 9999998848973499999999993489999999999999999999999999974503357
No 4
>2r6g_F Maltose transport system permease protein MALF; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} SCOP: e.70.1.1 f.58.1.1 PDB: 3fh6_F
Probab=99.75 E-value=6.5e-17 Score=119.01 Aligned_cols=195 Identities=22% Similarity=0.270 Sum_probs=128.2
Q ss_pred CCCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHCCCHHHHHHHHCCCCCHHHHHHHHC--------
Q ss_conf 134844999----999999999997887666776421012-1123202350345442012021011000000--------
Q gi|254780341|r 85 IKQGYWQET----TETLSLVLVSTFISMFIGVPLGVLAAW-YPRFYSIIRLFLDSMQTIPTFVYLIPALVLF-------- 151 (281)
Q Consensus 85 ~~~g~W~~~----~~Tl~~~~~~~~ia~~igiplGi~~~~-~~~~~~~~~p~l~~~~~iP~~v~l~p~i~~f-------- 151 (281)
.+.++|+.. ..|+..+..++.+++++|..++....+ +.+.++..+.++.+...+|.++.......+|
T Consensus 269 ~d~~~~~~~~~sl~~t~~~a~~s~~l~~~~gl~la~~~~~~~~r~~~~~~~l~~lP~~iP~iv~~l~~~~lf~~~~G~i~ 348 (514)
T 2r6g_F 269 TDEGIQKPFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLILPYAVPSFISILIFKGLFNQSFGEIN 348 (514)
T ss_dssp TCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSTTHHHHHHHTTHHHHSCHHHHHHHHHHHTCSSSSHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHEEHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 29507789999999999998788999999999999998641235111302512699999999999999998712442355
Q ss_pred -------CCC----------HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf -------210----------178899999988789999958874129989999999607882010122368862679999
Q gi|254780341|r 152 -------GLG----------MVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVA 214 (281)
Q Consensus 152 -------G~g----------~~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~ 214 (281)
|.+ ....+++.....+|.+++....+++++|+|+.|||+..|||+||+++||.+|..+|.++.
T Consensus 349 ~~l~~l~g~~~~~l~~~~~~~~~vil~~~~~~~P~~~~i~~~al~sIp~~l~EAA~idGAs~~q~f~~I~lPll~p~i~~ 428 (514)
T 2r6g_F 349 MMLSALFGVKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTP 428 (514)
T ss_dssp HHHHHTSSCCCCTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCTHHHHHHHHTCCCSHHHHHHTTGGGTHHHHHH
T ss_pred HHHHHCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHEEEHHHHHHHHHH
T ss_conf 56664048885031376877999999999888878777655443169858999999759886223011303646999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCC---------------CHHHHHHHH-H---HHHCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999997058---------------804999999-9---74078989999999999999999999987
Q gi|254780341|r 215 SLTQTIMLSLSMVVVTALVGSN---------------GLGVPVLRA-L---NTVDIGRGFESGLCIVILAIILDRLFSIP 275 (281)
Q Consensus 215 Gi~~~~~~~l~~vvia~~ig~~---------------GLG~~i~~a-~---~~~~~~~~~~~~l~Iv~lai~lDri~~~~ 275 (281)
+.-.+...++......-++.+| -+..++++. . ...|++.+.+..+.+.++..++--+..+.
T Consensus 429 ~~il~f~~~~~~F~~~~lLt~Ggp~~~~~~~~~~~t~~l~~~~y~~af~~~~~~~~g~AaAiavil~liv~~l~~i~~r~ 508 (514)
T 2r6g_F 429 LMIASFAFNFNNFVLIQLLTNGGPDRLGTTTPAGYTDLLVNYTYRIAFEGGGGQDFGLAAAIATLIFLLVGALAIVNLKA 508 (514)
T ss_dssp HHHHHHHHHHTCHHHHHHHCSSCSBCSSCSSCCBSSCCHHHHHHHHHTSSSSCCCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999888999994799875555565406889999999999851545678999999999999999999999999
Q ss_pred HHHC
Q ss_conf 4210
Q gi|254780341|r 276 DPRD 279 (281)
Q Consensus 276 ~~r~ 279 (281)
.||+
T Consensus 509 ~r~k 512 (514)
T 2r6g_F 509 TRMK 512 (514)
T ss_dssp ----
T ss_pred HHHC
T ss_conf 8114
No 5
>2r6g_G Maltose transport system permease protein MALG; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} SCOP: f.58.1.1 PDB: 3fh6_G
Probab=99.67 E-value=1.7e-15 Score=110.52 Aligned_cols=180 Identities=18% Similarity=0.152 Sum_probs=125.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HHHCCCHHHHHHHHCCCCCHHHHHHHHCC----------CCHH
Q ss_conf 844999999999999997887666776421012112-32023503454420120210110000002----------1017
Q gi|254780341|r 88 GYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPR-FYSIIRLFLDSMQTIPTFVYLIPALVLFG----------LGMV 156 (281)
Q Consensus 88 g~W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~~~~-~~~~~~p~l~~~~~iP~~v~l~p~i~~fG----------~g~~ 156 (281)
.+|....+|+..+..+..+++++|.+.+..+.|.+. .++.....+.....+|+.+...+....|+ .+..
T Consensus 80 ~~~~~l~nSl~~a~~~~~~~~~i~~~~a~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~ 159 (296)
T 2r6g_G 80 PVLLWLWNSVKVAGISAIGIVALSTTCAYAFARMRFPGKATLLKGMLIFQMFPAVLSLVALYALFDRLGEYIPFIGLNTH 159 (296)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTSHHHHHHHHHTTSSCSSSHHHHHHHHHHHHHHHSTTSSTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCH
T ss_conf 89999999999999999999999999999998347851799999998622476779899999999861421344302336
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 88999999887899999588741299899999996078820101223688626799999999999999999999997058
Q gi|254780341|r 157 PGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSN 236 (281)
Q Consensus 157 ~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~~ 236 (281)
..++.....+.|..++....+++++|+|+.|||+..|||+||+++||.+|...|.++++.-.+...++....+..+.+++
T Consensus 160 ~~vi~~~~~~~pf~~~~~~~~l~~ip~~l~EAA~~dGAs~~~~f~~I~lPll~p~i~~~~~l~fi~~~~~f~~~~~~~~~ 239 (296)
T 2r6g_G 160 GGVIFAYLGGIALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLRD 239 (296)
T ss_dssp HHHHHHHTTTTHHHHHHHHHHHTTSCTHHHHHHHHTTCCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCCHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999989999999997340777888987599303324389984756899999999999999976888813589
Q ss_pred C----HHHHHHHH--HHHHCHHHHHHHHHHHHHHHHH
Q ss_conf 8----04999999--9740789899999999999999
Q gi|254780341|r 237 G----LGVPVLRA--LNTVDIGRGFESGLCIVILAII 267 (281)
Q Consensus 237 G----LG~~i~~a--~~~~~~~~~~~~~l~Iv~lai~ 267 (281)
+ +...+... .++.|.+...++.+...+..++
T Consensus 240 ~~~~t~~~~i~~~~~~~~~~~~~~~A~~vi~~l~~li 276 (296)
T 2r6g_G 240 VNSYTLAVGMQQYLNPQNYLWGDFAAAAVMSALPITI 276 (296)
T ss_dssp GGGCCHHHHGGGGBCSSCBCHHHHHHHHHHTHHHHHH
T ss_pred CCCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9806399999999833062199999999999999999
No 6
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=31.12 E-value=20 Score=13.80 Aligned_cols=32 Identities=9% Similarity=-0.110 Sum_probs=27.1
Q ss_pred HHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 95887412998999999960788201012236
Q gi|254780341|r 173 LTRLGIISTPPILKEAACAFGATPFQVFRKVE 204 (281)
Q Consensus 173 ~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~ 204 (281)
.....++..+-+.-++|+.+|.|+....+|+.
T Consensus 45 ~I~~aL~~~~GN~s~AAr~LGIsR~TLyrklk 76 (81)
T 1umq_A 45 HIQRIYEMCDRNVSETARRLNMHRRTLQRILA 76 (81)
T ss_dssp HHHHHHHHTTSCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 99999999727799999997989999999999
No 7
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=18.08 E-value=35 Score=12.27 Aligned_cols=31 Identities=19% Similarity=0.087 Sum_probs=24.9
Q ss_pred HHHHHHCCCHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 5887412998999999960788201012236
Q gi|254780341|r 174 TRLGIISTPPILKEAACAFGATPFQVFRKVE 204 (281)
Q Consensus 174 t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~ 204 (281)
....++...-+..++|+.+|.||-...+|+.
T Consensus 56 I~~aL~~~~Gn~~~AA~~LGI~R~TL~~Klk 86 (91)
T 1ntc_A 56 LTTALRHTQGHKQEAARLLGWGAATLTAKLK 86 (91)
T ss_dssp HHHHHHHTTTCTTHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 9999999689599999997989999999999
No 8
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=16.07 E-value=39 Score=11.98 Aligned_cols=31 Identities=16% Similarity=0.037 Sum_probs=25.8
Q ss_pred HHHHHHCCCHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 5887412998999999960788201012236
Q gi|254780341|r 174 TRLGIISTPPILKEAACAFGATPFQVFRKVE 204 (281)
Q Consensus 174 t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~ 204 (281)
....++...-+..++|+.+|.||....+|+.
T Consensus 63 I~~aL~~~~gn~~~aA~~LGisR~tL~~klk 93 (98)
T 1eto_A 63 LDMVMQYTLGNQTRAALMMGINRGTLRKKLK 93 (98)
T ss_dssp HHHHHHHTTTCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 9999999199889999997989999999999
No 9
>1i3j_A I-TEVI, intron-associated endonuclease 1; protein-DNA complex, extended structure, Zn-finger, minor groove helix, helix-turn-helix; 2.20A {Enterobacteria phage T4} SCOP: d.285.1.1 PDB: 1t2t_A
Probab=12.83 E-value=48 Score=11.44 Aligned_cols=23 Identities=22% Similarity=0.063 Sum_probs=18.9
Q ss_pred CHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 98999999960788201012236
Q gi|254780341|r 182 PPILKEAACAFGATPFQVFRKVE 204 (281)
Q Consensus 182 ~~~~~eaa~~~Gas~~q~l~~V~ 204 (281)
=+++.|||+.+|.++-.+..++.
T Consensus 83 Y~S~~EAAr~Lgis~~TI~~RiK 105 (116)
T 1i3j_A 83 FDCAADAARHFKISSGLVTYRVK 105 (116)
T ss_dssp ESSHHHHHHHHTCCHHHHHHHHH
T ss_pred ECCHHHHHHHHCCCHHHHHHHHH
T ss_conf 62899999996898377899870
No 10
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=12.15 E-value=51 Score=11.31 Aligned_cols=10 Identities=10% Similarity=0.215 Sum_probs=4.7
Q ss_pred CCHHHHHHHH
Q ss_conf 8449999999
Q gi|254780341|r 88 GYWQETTETL 97 (281)
Q Consensus 88 g~W~~~~~Tl 97 (281)
|-|.+.+.++
T Consensus 540 ~~~~~~~~~~ 549 (602)
T 1cii_A 540 ENWRPLFVKT 549 (602)
T ss_dssp TTCHHHHHHH
T ss_pred CCCCHHHHHH
T ss_conf 8871389999
Done!