HHSEARCH alignment of GI: 254780341 and SCOP domain: d3dhwa1

Alignment
>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]}
Probab=99.93  E-value=2.1e-25  Score=168.67  Aligned_cols=180  Identities=29%  Similarity=0.408  Sum_probs=148.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------CHHHHHCCCHHHHHHHHCCCCCHHHHHH------HHCCCCH
Q ss_conf             4999999999999997887666776421012--------1123202350345442012021011000------0002101
Q gi|254780341|r   90 WQETTETLSLVLVSTFISMFIGVPLGVLAAW--------YPRFYSIIRLFLDSMQTIPTFVYLIPAL------VLFGLGM  155 (281)
Q Consensus        90 W~~~~~Tl~~~~~~~~ia~~igiplGi~~~~--------~~~~~~~~~p~l~~~~~iP~~v~l~p~i------~~fG~g~  155 (281)
                      ++...+|+.+...++.++.++|+|+|+++++        +++..+...++...++++|..+++....      ..++.|.
T Consensus         5 l~~~~~tl~is~~~~~i~~ilg~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~~~~~~~~~~~~~~~~~~   84 (203)
T d3dhwa1           5 VRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVIVGTSIGL   84 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTGGGGGGGGGGTTCSSSCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTCCSSSH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf             99999999999999999999999999999998744432008999999999999999999999999998635540454119


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             78899999988789999958874129989999999607882010122368862679999999999999999999999705
Q gi|254780341|r  156 VPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGS  235 (281)
Q Consensus       156 ~~~i~a~~i~~~~pi~~~t~~gl~~v~~~~~eaa~~~Gas~~q~l~~V~lP~a~P~i~~Gi~~~~~~~l~~vvia~~ig~  235 (281)
                      .+.+++..+++.|++.+++.+|++++|+|++|+||++|+|+||+++||.+|++.|.+++|.+.+...++....+++++|+
T Consensus        85 ~~~i~~~~~~~~p~~~~~~~~~l~~i~~~~~Eaa~~lGas~~q~~~~vilP~~~p~i~~~~~~~~~~~i~~~~~~~~ig~  164 (203)
T d3dhwa1          85 QAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGA  164 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCTTTTTHHHHHTCCTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCCSTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999986489999999888843620689998869944424188409976999999999999999999999999977


Q ss_pred             CCHHHHHHHH-HHHHCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8804999999-9740789899999999999999999999
Q gi|254780341|r  236 NGLGVPVLRA-LNTVDIGRGFESGLCIVILAIILDRLFS  273 (281)
Q Consensus       236 ~GLG~~i~~a-~~~~~~~~~~~~~l~Iv~lai~lDri~~  273 (281)
                      +|+|+...+. .+++|...+....    .+.+++..+.+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~li~  199 (203)
T d3dhwa1         165 GGLGQIGYQYGYIGYNATVMNTVL----VLLVILVYLIQ  199 (203)
T ss_dssp             CHHHHHHHHHHHSSCCTTHHHHHH----HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHH----HHHHHHHHHHH
T ss_conf             599999999998740289999999----99999999999


SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: MetI-like
superfamily: MetI-like
family: MetI-like
domain: D-methionine transport system permease protein MetI
species: Escherichia coli [TaxId: 562]