RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780341|ref|YP_003064754.1| proline/glycine betaine ABC
transporter, permease protein [Candidatus Liberibacter asiaticus str.
psy62]
(281 letters)
>gnl|CDD|33916 COG4176, ProW, ABC-type proline/glycine betaine transport system,
permease component [Amino acid transport and
metabolism].
Length = 290
Score = 272 bits (696), Expect = 1e-73
Identities = 135/274 (49%), Positives = 186/274 (67%), Gaps = 1/274 (0%)
Query: 7 APIPLGDYLQEFFVCLTQNGEWFCNILSFILLKAVNLVLFVLQYLPPLVFVCVVSLLVLM 66
A IP+G ++ E LT N + +S L ++ + +L +PPL+ + +V+LL
Sbjct: 9 AKIPIGSWVDEAVDWLTTNFGPLFDAISNPLEFLLDGLENLLLAVPPLLLILIVALLAWF 68
Query: 67 VKRSITIAVGTAMGLLLIIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYS 126
+ +A+ T +GLLLI G W +T +TL+LVL +T IS+ IG+PLG+ AA PR Y
Sbjct: 69 ASG-LGLAIFTLLGLLLIGNLGLWDQTMQTLALVLTATLISIVIGIPLGIWAARSPRVYR 127
Query: 127 IIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATIVFSIPTSVRLTRLGIISTPPILK 186
I+R LD MQT+PTFVYLIPA++LFGLG VPG++AT++F++P +RLT LGI P L
Sbjct: 128 IVRPILDLMQTMPTFVYLIPAVMLFGLGNVPGLIATVIFAMPPMIRLTNLGIRQVPAELI 187
Query: 187 EAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLGVPVLRAL 246
EAA AFGATP Q KV+LP A+P I+A + QTIML+LSMVV+ +++G+ GLG VLR +
Sbjct: 188 EAADAFGATPRQKLFKVQLPLALPTIMAGINQTIMLALSMVVIASMIGAGGLGQEVLRGI 247
Query: 247 NTVDIGRGFESGLCIVILAIILDRLFSIPDPRDR 280
+DIG GFE+GL IVILAIILDRL + +
Sbjct: 248 QRLDIGLGFEAGLAIVILAIILDRLTQAFGRKAK 281
>gnl|CDD|31367 COG1174, OpuBB, ABC-type proline/glycine betaine transport systems,
permease component [Amino acid transport and
metabolism].
Length = 221
Score = 115 bits (290), Expect = 1e-26
Identities = 61/185 (32%), Positives = 100/185 (54%)
Query: 89 YWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPAL 148
T + L LVL++ I++ IGVPLG+L R ++ + +QTIP+ L +
Sbjct: 24 LLALTLQHLLLVLLAVLIAILIGVPLGILVTRSRRLAGLVLGVANVLQTIPSLALLALLI 83
Query: 149 VLFGLGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFA 208
+ G+G+ P I+A ++S+ VR T G+ S PP + EAA G T +Q KVELP A
Sbjct: 84 PVLGIGLTPAIIALFLYSLLPIVRNTYTGLASVPPSVIEAARGMGMTRWQRLLKVELPLA 143
Query: 209 IPQIVASLTQTIMLSLSMVVVTALVGSNGLGVPVLRALNTVDIGRGFESGLCIVILAIIL 268
+P I+A + +++++ + AL+G+ GLG + R LN + + + +LAI+
Sbjct: 144 LPVILAGIRTAVVINIGTATIAALIGAGGLGDLIFRGLNLNNTALILAGAIPVALLAILA 203
Query: 269 DRLFS 273
D L
Sbjct: 204 DVLLG 208
>gnl|CDD|30945 COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport
system, permease component [Inorganic ion transport and
metabolism].
Length = 258
Score = 84.9 bits (210), Expect = 2e-17
Identities = 56/186 (30%), Positives = 93/186 (50%), Gaps = 1/186 (0%)
Query: 90 WQETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPALV 149
+Q +L VL+ ++ +G+PLG+L ++ + ++ IP A++
Sbjct: 60 FQHLLASLLRVLLGFALAAVLGIPLGILMGLSRLLERLLDPLVQVLRPIPPLALAPLAIL 119
Query: 150 LFGLGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAI 209
FG+G IV ++ + + T G+ S P L E A GA+ +Q+ RKV LP A+
Sbjct: 120 WFGIGETSKIVIAVLGAFFPILINTLDGVRSVDPDLLELARTLGASRWQILRKVILPAAL 179
Query: 210 PQIVASLTQTIMLSLSMVVVTALVGSN-GLGVPVLRALNTVDIGRGFESGLCIVILAIIL 268
P I L I L+ +VV L+G++ GLG +L A N + F + L I +L ++L
Sbjct: 180 PYIFTGLRIAIGLAWIGLVVAELLGASSGLGYLILDARNNLQTDLVFAAILVIALLGLLL 239
Query: 269 DRLFSI 274
DRL +
Sbjct: 240 DRLVRL 245
>gnl|CDD|119394 cd06261, TM_PBP2, Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette
(ABC) transporters which generally bind type 2 PBPs.
These types of transporters consist of a PBP, two TMs,
and two cytoplasmic ABC ATPase subunits, and are mainly
involved in importing solutes from the environment. The
solute is captured by the PBP which delivers it to a
gated translocation pathway formed by the two TMs. The
two ABCs bind and hydrolyze ATP and drive the transport
reaction. For these transporters the ABCs and TMs are on
independent polypeptide chains. These systems transport
a diverse range of substrates. Most are specific for a
single substrate or a group of related substrates;
however some transporters are more promiscuous,
transporting structurally diverse substrates such as the
histidine/lysine and arginine transporter in
Enterobacteriaceae. In the latter case, this is achieved
through binding different PBPs with different
specificities to the TMs. For other promiscuous
transporters such as the multiple-sugar transporter Msm
of Streptococcus mutans, the PBP has a wide substrate
specificity. These transporters include the
maltose-maltodextrin, phosphate and sulfate
transporters, among others..
Length = 190
Score = 71.9 bits (177), Expect = 2e-13
Identities = 46/183 (25%), Positives = 90/183 (49%), Gaps = 10/183 (5%)
Query: 96 TLSLVLVSTFISMFIGVPLGVLAAWY-PRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLG 154
TL L L++T +++ +G+ LG++ A + ++R +D + ++P+ V + ++LFG+
Sbjct: 4 TLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVL 63
Query: 155 MV---------PGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVEL 205
+ P ++ ++ P + + R + S P L EAA A GA+P+Q+FR++ L
Sbjct: 64 LGWGILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIIL 123
Query: 206 PFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLGVPVLRALNTVDIGRGFESGLCIVILA 265
P A+P I+ L +L + + +G P L I + G+ +
Sbjct: 124 PLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPGTGLLLIFAILFPGDLGVAAAVAL 183
Query: 266 IIL 268
I+L
Sbjct: 184 ILL 186
>gnl|CDD|32194 COG2011, AbcD, ABC-type metal ion transport system, permease
component [Inorganic ion transport and metabolism].
Length = 222
Score = 70.5 bits (173), Expect = 5e-13
Identities = 53/171 (30%), Positives = 84/171 (49%), Gaps = 16/171 (9%)
Query: 84 IIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWY--------PRFYSIIRLFLDSM 135
+ Q W+ T ETL +V VST + IG+PLGVL Y I+ ++ +
Sbjct: 9 DLWQLLWRATLETLYMVFVSTLFAFLIGLPLGVLLFLTGPGGLLENKLLYRILSAIVNIL 68
Query: 136 QTIPTFVYLIPALVLF-------GLGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEA 188
++IP F+ L+ AL+ +G IV + + P RL + + EA
Sbjct: 69 RSIP-FIILLVALIPLTRLIVGTSIGTTAAIVPLTIGAAPFVARLVESALREVDKGVIEA 127
Query: 189 ACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLG 239
A A GA+P+Q+ RKV LP A+P +V+ +T T++ + + +G GLG
Sbjct: 128 AQAMGASPWQIIRKVLLPEALPGLVSGITVTLISLIGYSAMAGAIGGGGLG 178
>gnl|CDD|33437 COG3639, COG3639, ABC-type phosphate/phosphonate transport system,
permease component [Inorganic ion transport and
metabolism].
Length = 283
Score = 67.2 bits (164), Expect = 5e-12
Identities = 44/185 (23%), Positives = 82/185 (44%), Gaps = 4/185 (2%)
Query: 89 YWQETTETLSLVLVSTFISMFIGVPLGVLAA----WYPRFYSIIRLFLDSMQTIPTFVYL 144
+TL++ T ++ + +PL LAA +R LD ++TIP V+
Sbjct: 87 ILTALLQTLAIAFAGTLLAAILAIPLAFLAARNLSPKRWISFPVRRLLDFIRTIPELVWA 146
Query: 145 IPALVLFGLGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVE 204
+ + FGLG G++A +++I +L + S EA A GA+ Q+
Sbjct: 147 LLFVAAFGLGPFAGVLALGIYTIGILGKLYAEALESIDTGPGEALRATGASRLQLILFGV 206
Query: 205 LPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLGVPVLRALNTVDIGRGFESGLCIVIL 264
LP P ++ ++ V LVG+ G+G ++ +++ + L I++L
Sbjct: 207 LPQIKPNFISYSLYRFESNIRAAAVLGLVGAGGIGQRLMNSISLFQWDKVATIILPILVL 266
Query: 265 AIILD 269
I++D
Sbjct: 267 VILID 271
>gnl|CDD|144205 pfam00528, BPD_transp_1, Binding-protein-dependent transport system
inner membrane component. The alignments cover the most
conserved region of the proteins, which is thought to be
located in a cytoplasmic loop between two transmembrane
domains. The members of this family have a variable
number of transmembrane helices.
Length = 183
Score = 62.7 bits (153), Expect = 1e-10
Identities = 50/166 (30%), Positives = 86/166 (51%), Gaps = 8/166 (4%)
Query: 111 GVPLGVLAAWYP--RFYSIIRLFLDSMQTIPTFV-----YLIPALVLFGLGMVPGIVATI 163
G+PLG++AA R ++R +D +Q +P+FV +I L + G G++P I+ +
Sbjct: 1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVISILSILGHGILPAIILAL 60
Query: 164 VFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLS 223
+ + + R + S P L EAA A GA+ +Q+FRK+ LP A+P I+ L +
Sbjct: 61 LGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGA 120
Query: 224 LSMVVVTALVGSN-GLGVPVLRALNTVDIGRGFESGLCIVILAIIL 268
L V+ +GS GLG+ ++ A+ D L ++ ++L
Sbjct: 121 LGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLL 166
>gnl|CDD|31366 COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 289
Score = 57.6 bits (139), Expect = 3e-09
Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 9/150 (6%)
Query: 96 TLSLVLVSTFISMFIGVPLGVLAAWYP-RFYSIIRLFLDSMQTIPTFVYLIPALVLFGLG 154
+L + L++ IS+ IG LG+LA ++ ++ D P+ + I + + G G
Sbjct: 88 SLLIGLLAVLISLVIGTLLGLLAGYFGGWVDRVLMRITDIFLAFPSLLLAILLVAILGPG 147
Query: 155 MVPGIVATIVFSIPTSVRLTR---LGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQ 211
++ I+A + P R+ R L + + EAA A GA+ ++ + LP +P
Sbjct: 148 LLNLILALALVGWPGYARIVRGQVLSLREREYV--EAARALGASTLRIIFRHILPNVLPP 205
Query: 212 IVASLTQTIMLSLSMVVVTALVGSNGLGVP 241
++ T I ++ A + GLGV
Sbjct: 206 LIVLATLDIG---GAILAEAGLSFLGLGVQ 232
>gnl|CDD|30918 COG0573, PstC, ABC-type phosphate transport system, permease
component [Inorganic ion transport and metabolism].
Length = 310
Score = 57.1 bits (138), Expect = 5e-09
Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 26/167 (15%)
Query: 101 LVSTFISMFIGVPLGVLAAWY-------PRFYSIIRLFLDSMQTIPTFVY-------LIP 146
L+++ I++ I VP+G+ A + R +++ ++ + IP+ VY L P
Sbjct: 85 LITSLIALLIAVPVGIGTAIFLSEYAPPRRLRRVLKPAIELLAGIPSVVYGFFGLFVLAP 144
Query: 147 AL------------VLFGLGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGA 194
L FG+ ++ + + +PT L+R + + P L+EAA A GA
Sbjct: 145 FLRDVFGPPLGFNLGPFGISILTAGIVLAIMILPTIASLSRDALRAVPRSLREAAYALGA 204
Query: 195 TPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLGVP 241
T ++ RKV LP A IV ++ + +L + +V N +P
Sbjct: 205 TKWETIRKVILPAARSGIVGAVILGLGRALGETMAVTMVIGNTARIP 251
>gnl|CDD|30926 COG0581, PstA, ABC-type phosphate transport system, permease
component [Inorganic ion transport and metabolism].
Length = 292
Score = 57.1 bits (138), Expect = 5e-09
Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 9/134 (6%)
Query: 96 TLSLVLVSTFISMFIGVPLGVLAAWYP---RFYSIIRLFLDSMQTIPTFVYLIPALVLF- 151
TL L+L++ I + +G+ G+ A Y R +IR +D + ++P+ VY + L F
Sbjct: 76 TLYLILLAILIGVPLGIGAGIYLAEYAKKSRLTKVIRFAIDILASVPSIVYGLFGLGFFV 135
Query: 152 -----GLGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELP 206
G + G +A + +P +R T + + P L+EAA A GAT +Q KV LP
Sbjct: 136 VTLGFGFSALAGALALALLMLPVVIRTTEEALRAVPDSLREAAYALGATKWQTIFKVVLP 195
Query: 207 FAIPQIVASLTQTI 220
A+P I+ + I
Sbjct: 196 AALPGIITGVILAI 209
>gnl|CDD|31370 COG1177, PotC, ABC-type spermidine/putrescine transport system,
permease component II [Amino acid transport and
metabolism].
Length = 267
Score = 56.7 bits (137), Expect = 7e-09
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 6/154 (3%)
Query: 90 WQETTETLSLVLVSTFISMFIGVPLGVLAAWY-PRFYSIIRLFLDSMQTIPTFVYLIPAL 148
+L + L+S ++ +G + A Y R +++ + +P V I L
Sbjct: 64 LSALWNSLLIALLSALLATLLGTLAALALARYRFRGKNLLEGLILLPLVVPDIVTGIALL 123
Query: 149 VLF-----GLGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKV 203
+LF G ++A IVF++P V + + L+EAA GA+P+Q FR+V
Sbjct: 124 LLFAALGLPGGFWTIVLAHIVFALPFVVVVVSARLQGFDRSLEEAARDLGASPWQTFRRV 183
Query: 204 ELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNG 237
LP +P I++ LS V+T + G
Sbjct: 184 TLPLILPGILSGALLAFTLSFDEFVITFFLAGPG 217
>gnl|CDD|30901 COG0555, CysU, ABC-type sulfate transport system, permease
component [Posttranslational modification, protein
turnover, chaperones].
Length = 274
Score = 53.3 bits (128), Expect = 7e-08
Identities = 47/210 (22%), Positives = 81/210 (38%), Gaps = 22/210 (10%)
Query: 54 LVFVCVVSLLVLMVKRSITIAVGTAMGLLLIIKQGYWQETTETLSLVLVSTFISMFIGVP 113
L + LL+L++ S + +++G L L L++ F + + +
Sbjct: 16 LGLTLLFLLLILLLPLSALVTKSSSLGWAGFWSALTSPRVLAALKLTLLTAFAATLLNLV 75
Query: 114 LGVLAAWYPRFY-----SIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPG---------- 158
G+ AW Y ++ +D +PT V I L+LFG + G
Sbjct: 76 FGLPLAWVLVRYDFPGKRLVDALVDLPFALPTAVAGIALLLLFGPNGLLGSLLAPLGIKF 135
Query: 159 -------IVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQ 211
IVA S+P VR + + +EAA + GA+P Q FR+V LP +P
Sbjct: 136 AFTPLGVIVAMFFVSLPFVVRTVQPVLEEIDREYEEAARSLGASPLQTFRRVILPLLLPA 195
Query: 212 IVASLTQTIMLSLSMVVVTALVGSNGLGVP 241
++A + S+ ++ N
Sbjct: 196 LLAGFILSFARSIGEFGAVLIIAGNTPYKT 225
>gnl|CDD|31371 COG1178, ThiP, ABC-type Fe3+ transport system, permease component
[Inorganic ion transport and metabolism].
Length = 540
Score = 51.4 bits (123), Expect = 2e-07
Identities = 55/202 (27%), Positives = 90/202 (44%), Gaps = 21/202 (10%)
Query: 54 LVFVCVVSLLVLMVKRSITIAVGTAMGLLLIIKQGY-WQETTETLSLVLVSTFISMFIGV 112
LV + V L+ + ++++ G L ++ Y W+ TL L ++ T +S+ +G+
Sbjct: 18 LVALFVALPLLAVFAAALSLGGGAFDALAAVLSDPYLWRVLANTLILAVLVTLLSVVLGI 77
Query: 113 PLGVLAAWYP-RFYSIIRLFLDSMQTIPTFVYLIPALVLFG------------------- 152
PL L + Y ++R L IP FV + + LFG
Sbjct: 78 PLAWLLSRYDFPGRRLLRWLLALPLVIPPFVVALAWISLFGPSGPLAALLELLGFESPSI 137
Query: 153 LGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQI 212
G+ ++A + F+ P + L + + PP L+EAA GA+ +QVFRKV LP P I
Sbjct: 138 YGLGGILLALVFFNYPLAYLLVLAALETIPPSLEEAARTLGASRWQVFRKVTLPLLRPAI 197
Query: 213 VASLTQTIMLSLSMVVVTALVG 234
A ML L+ ++G
Sbjct: 198 AAGALLVFMLCLADFGTPLILG 219
Score = 51.4 bits (123), Expect = 3e-07
Identities = 53/228 (23%), Positives = 98/228 (42%), Gaps = 12/228 (5%)
Query: 51 LPPLVFVCVVSLLVLMVKRSITIAVGTAMGLLLIIKQGYWQETTETLSLVLVSTFISMFI 110
L L+ ++ L+ +V S + G + L+L Q +WQ +L L L + +++ +
Sbjct: 294 LIVLLLFLILLPLLAVVLPSFVLNWGRPLSLVLASPQ-FWQALLNSLLLALAAALLAVVL 352
Query: 111 GVPLGVLAAWYPRFYSIIRLFLDSM-QTIPTFV----YLIPALVLFGLGMVPG------I 159
+ L S + L + +P V L+ GL P +
Sbjct: 353 ALLLAYAVRRLRSRLSRLLERLSMLPLAVPGVVLALGLLLLFRAPDGLLYQPLYTLLILV 412
Query: 160 VATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQT 219
+A + +P +VR R + P L+EAA + GA+ + FR++ LP P ++A+
Sbjct: 413 LAYALRFLPFAVRSLRAALRQIDPSLEEAARSLGASGLRRFRRITLPLLRPGLLAAAALV 472
Query: 220 IMLSLSMVVVTALVGSNGLGVPVLRALNTVDIGRGFESGLCIVILAII 267
LS+ + T L+GS G + N + GR ++ +IL ++
Sbjct: 473 FALSIGELSATLLLGSPGTRTLTVYIYNLLSDGRYGDAAALALILLVV 520
>gnl|CDD|33901 COG4149, ModC, ABC-type molybdate transport system, permease
component [Inorganic ion transport and metabolism].
Length = 225
Score = 49.8 bits (119), Expect = 9e-07
Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 19/170 (11%)
Query: 90 WQETTETLSLVLVSTFISMFIGVPLG-VLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPAL 148
+L + L+ST + + +G+ L +LA R S++ + +P V L
Sbjct: 6 LTALLLSLKVALISTLLLLPLGIALAYLLARRRFRGKSLLESLVLLPLVLPPVVLGFLLL 65
Query: 149 VLFGLGMVPG------------------IVATIVFSIPTSVRLTRLGIISTPPILKEAAC 190
VLFG G ++A++V S+P VR RL + L+EAA
Sbjct: 66 VLFGRNGFIGQFLEDWFGLSLAFSWQGAVLASVVVSLPLMVRPLRLAFEAIDRELEEAAR 125
Query: 191 AFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLGV 240
GA+ ++VF ++ LP A+P I+A + + +L T + N G
Sbjct: 126 TLGASRWEVFFRITLPLALPGILAGVILSFARALGEFGATLMFAGNIPGE 175
>gnl|CDD|31108 COG0765, HisM, ABC-type amino acid transport system, permease
component [Amino acid transport and metabolism].
Length = 222
Score = 47.8 bits (114), Expect = 3e-06
Identities = 49/180 (27%), Positives = 78/180 (43%), Gaps = 13/180 (7%)
Query: 96 TLSLVLVSTFISMFIGVPLGVLAAWYPRFYS-IIRLFLDSMQTIPTFVYLI----PALVL 150
TL L L+S + + +G+ L ++ + + R +++ + P V L L L
Sbjct: 25 TLLLTLLSIVLGLVLGLLLALMRLSGNKPLRWLARAYVEIFRGTPLLVQLFFIYFGLLPL 84
Query: 151 FGLGMVPGIVATIVFSIPTSVRLT---RLGIISTPPILKEAACAFGATPFQVFRKVELPF 207
G+ + P A I S+ + L R GI S P EAA A G T +Q R V LP
Sbjct: 85 LGIELDPFTAAVIALSLNSGAYLAEIVRAGIQSVPKGQWEAARALGLTYWQTMRYVILPQ 144
Query: 208 AIPQIVASLTQTIMLSLSMVVVTALVGSNGLGVPVLRALNTVDIGRGFESGLCIVILAII 267
A+ I+ L + S++ T+LV +GV L + R F ++ A+I
Sbjct: 145 ALRVILPPLGNQFI---SLIKDTSLVSV--IGVVELTRAAQIIAARTFRPFEVYLLAALI 199
>gnl|CDD|30946 COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 317
Score = 46.2 bits (110), Expect = 1e-05
Identities = 48/221 (21%), Positives = 92/221 (41%), Gaps = 38/221 (17%)
Query: 96 TLSLVLVSTFISMFIGVPLGVLAAWYP--RFYSIIRLFLDSMQTIPTFVYLIPALVLFGL 153
TL L LV+ +++ +G+PLG+LAA ++R+ +IP+F + ++LF +
Sbjct: 98 TLELALVALILAVLLGIPLGILAALKRGSWIDRLLRVLSLLGISIPSFWLGLLLILLFSV 157
Query: 154 G------------------------MVPGIVATIVFSIPTSVRLTRLGIISTPPILKE-- 187
++ + + S+ RLTR ++ L +
Sbjct: 158 KLGWLPVGGRGSAGSWDSFLDALKHLILPALTLGLVSLAGIARLTRSSMLEV---LNQDY 214
Query: 188 --AACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALV-GSNGLGVPVLR 244
A A G + ++ K L A+ ++ L + L VV V GLG ++
Sbjct: 215 VRTARAKGLSERRILFKHALRNALLPVITVLGLQLGGLLGGAVVVETVFSWPGLGRLLVD 274
Query: 245 ALNTVDI----GRGFESGLCIVILAIILDRLFSIPDPRDRI 281
A+ D G L +++ +++D L+++ DPR R+
Sbjct: 275 AILNRDYPVVQGIVLVIALLVILGNLLVDILYALLDPRIRL 315
>gnl|CDD|31369 COG1176, PotB, ABC-type spermidine/putrescine transport system,
permease component I [Amino acid transport and
metabolism].
Length = 287
Score = 44.8 bits (106), Expect = 2e-05
Identities = 56/227 (24%), Positives = 90/227 (39%), Gaps = 30/227 (13%)
Query: 37 LLKAVNLVLFVLQYLPPLVFVCVVSLLVLMVKRSITIAVGTAMGLLLII-KQGYWQETTE 95
LL A L+ +L +L PL+ V V S L+ ++ V T ++ Y
Sbjct: 11 LLIAPPLLWLLLFFLLPLLIVLVPSFLLPLLSFFDYSGVFTLGNYARLLTDSLYLTVLLR 70
Query: 96 TLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLI---------- 145
+L + + T I + +G P+ A P + + L L +P + L+
Sbjct: 71 SLWIAALVTLICLLLGYPVAYFLARSPPRWRNLLLLL---VILPFWTSLLIRTYAWIVIL 127
Query: 146 -------PALVLFGLGMVPG---------IVATIVFSIPTSVRLTRLGIISTPPILKEAA 189
AL+ GL P I+ + +P + + P L EAA
Sbjct: 128 GRNGLINQALLALGLIDEPLRLLYTETAVIIGMVYIYLPFMILPLYAALEKIDPSLLEAA 187
Query: 190 CAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSN 236
GA+PFQ FR+V LP ++P I+A + +L V AL+G
Sbjct: 188 RDLGASPFQTFRRVILPLSLPGIIAGSLLVFIPALGSFVTPALLGGP 234
>gnl|CDD|30744 COG0395, UgpE, ABC-type sugar transport system, permease component
[Carbohydrate transport and metabolism].
Length = 281
Score = 44.8 bits (106), Expect = 3e-05
Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 6/142 (4%)
Query: 88 GYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQT-IPTFVYLIP 146
G+ + +L + + ST +S+ + A + + L + +P V LIP
Sbjct: 70 GFLRYFLNSLIVAVGSTVLSLLLSSLAAYALARFRFKGRKLLFLLLLLTLMLPAQVLLIP 129
Query: 147 ALVLFG-LGMV----PGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFR 201
+L LG++ I+ + F +P ++ L R + P L+EAA GA+ FQ+F
Sbjct: 130 LYLLMRKLGLLNTYWGLILPYLAFGLPFAIFLLRQFFRTIPKELEEAARIDGASEFQIFF 189
Query: 202 KVELPFAIPQIVASLTQTIMLS 223
K+ LP A P + A T + +
Sbjct: 190 KIVLPLAKPGLAAVAIFTFIGA 211
>gnl|CDD|33626 COG3833, MalG, ABC-type maltose transport systems, permease
component [Carbohydrate transport and metabolism].
Length = 282
Score = 37.8 bits (88), Expect = 0.003
Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 10/133 (7%)
Query: 89 YWQETTETLSLVLVSTFISMFIGVPLGVLAAWYP---RFYSIIRLFLDSMQTIPTFVYLI 145
Y +L + L++ I++ + + Y R Y + + +Q P LI
Sbjct: 71 YLLWLWNSLIVALITAAITVALVTLAAYAFSRYRFKGRKYLLKFFLI--LQMFPGVAALI 128
Query: 146 PALVLFG-LGMVPGIVATIVF----SIPTSVRLTRLGIISTPPILKEAACAFGATPFQVF 200
VL LG++ + I+ +IP + L + + P L EAA GAT FQ+F
Sbjct: 129 ALYVLLKLLGLLNTLWGLILAYLGGAIPMNTWLIKGYFDTIPKSLDEAAKIDGATRFQIF 188
Query: 201 RKVELPFAIPQIV 213
R++ LP + P +
Sbjct: 189 RRILLPLSKPILA 201
>gnl|CDD|33906 COG4160, ArtM, ABC-type arginine/histidine transport system,
permease component [Amino acid transport and
metabolism].
Length = 228
Score = 37.5 bits (87), Expect = 0.004
Identities = 38/157 (24%), Positives = 67/157 (42%), Gaps = 24/157 (15%)
Query: 96 TLSLVLVSTFISMFIGVPLGVLAAWYPRFYSI-IRLFLDSMQTIPTFVYLIPALVLFGLG 154
TL L+++S I + +PL + R+ S R + + P V L L+ +GLG
Sbjct: 20 TLWLLIISLVIGFVLALPLALARVSKNRWVSWPARAYTYVFRGTPLLVQLF--LIYYGLG 77
Query: 155 MVPGIV---------------ATIVFSIPTSVRLTRL---GIISTPPILKEAACAFGATP 196
I A + ++ T+ T + I + P EAA A G +
Sbjct: 78 QFEWIRESIFLWPFLREAWFCAVLALTLNTAAYTTEIFRGAIRAVPRGQWEAARALGMSR 137
Query: 197 FQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALV 233
F+ R++ LP A+ + + + + ++L M+ TAL
Sbjct: 138 FKTLRRIILPSALRRALPAYSNEVIL---MLKSTALA 171
>gnl|CDD|31368 COG1175, UgpA, ABC-type sugar transport systems, permease
components [Carbohydrate transport and metabolism].
Length = 295
Score = 36.4 bits (84), Expect = 0.009
Identities = 50/217 (23%), Positives = 79/217 (36%), Gaps = 26/217 (11%)
Query: 36 ILLKAVNLVLFVLQYLPPLVFVCVVSLLVLMVKRSITIAVGTAMGLLLIIKQGYWQETTE 95
LL A L+L ++ +L PL+ +S + + VG A L +W
Sbjct: 13 YLLLAPALLLLLVFFLYPLILTLYLSFTNYDLLGPPSTFVGLANYERLFSDPTFWNALKN 72
Query: 96 TLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVY------------ 143
TL ++S + + +G+ L +L R R I + V
Sbjct: 73 TLVFTVISVPLQLVLGLLLALLLNRKLRGRGFFRTLFFLPWAISSVVAGLIWKWLFNPSF 132
Query: 144 --LIPALVLFGLGMVPG------------IVATIVFSIPTSVRLTRLGIISTPPILKEAA 189
L L+L GL I+ ++ + L G+ S P L EAA
Sbjct: 133 GLLNSLLLLLGLIPDINWLSDPNTALFAVIIVSVWKGTGFVMLLFLAGLQSIPKELYEAA 192
Query: 190 CAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSM 226
GA+P+Q FRK+ LP P I L + + +
Sbjct: 193 RIDGASPWQRFRKITLPLLRPVIFFVLILRTIFAFQV 229
>gnl|CDD|34228 COG4590, COG4590, ABC-type uncharacterized transport system,
permease component [General function prediction only].
Length = 733
Score = 35.8 bits (82), Expect = 0.013
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 167 IPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSL-- 224
IPT + I S P L + + A GATP+Q V L A P I +++ + ++
Sbjct: 596 IPTIFSIAEDAIFSVPKSLSDGSLALGATPWQTLIYVVLLTASPGIFSAIMIGLGRAVGE 655
Query: 225 SMVVVTALVGSNGLGVPVLRALNTV 249
+M+V+ A + L + + T+
Sbjct: 656 TMIVLMATGNTPLLDWNIFEGMRTL 680
>gnl|CDD|164564 CHL00187, cysT, sulfate transport protein; Provisional.
Length = 237
Score = 35.8 bits (83), Expect = 0.014
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 160 VATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQT 219
+A I S P VR + + L+EAA + GA+P+Q F KV P IP ++ L T
Sbjct: 142 LAMIFVSFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALT 201
Query: 220 IMLSLSMVVVTALVGSN----GLGVPVL 243
++ ++ SN L VL
Sbjct: 202 FSRAIGEYGSIVIISSNIPFKDLVASVL 229
>gnl|CDD|34591 COG4986, COG4986, ABC-type anion transport system, duplicated
permease component [Inorganic ion transport and
metabolism].
Length = 523
Score = 33.7 bits (77), Expect = 0.061
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 13/131 (9%)
Query: 96 TLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPT----------FVYLI 145
T +L++ IS+ G L A RF +I LD +Q++P FVYL
Sbjct: 14 TAGRMLLAILISILTGWFLAYAAIKSKRFENIYIPVLDVLQSVPVLGFFPIVLIFFVYLF 73
Query: 146 PALVLFGLGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVEL 205
P + L + ++ ++I S + + P L E A + + ++ +
Sbjct: 74 PGPLGVELAADFLVFTSVAWNIWFSEYQS---FKTVPSDLLEVARNYRLSFLLRMARLYI 130
Query: 206 PFAIPQIVASL 216
PFA+P I A+L
Sbjct: 131 PFAMPGIAANL 141
Score = 31.8 bits (72), Expect = 0.22
Identities = 39/188 (20%), Positives = 70/188 (37%), Gaps = 11/188 (5%)
Query: 96 TLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYL-IPALVLFGLG 154
V+V +S I + LG A PR I + + + P +Y + +
Sbjct: 322 DYLRVVVILALSFLISIFLGYSIALRPRVEGIGQPLIQFLAAFPAPIYFPLLFAAIKTFI 381
Query: 155 MVPGIVATIVFSIPT---SVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQ 211
+ P I + + I T G + P EAA + + +R++ LP P
Sbjct: 382 LTPEIWLSPLGFIGTFYYIFYNVIAGAKALPVEYFEAAKNYNLGGWAKWRRIILPGTFPY 441
Query: 212 IVASLTQTIMLSLSMVVVTALVGSN-------GLGVPVLRALNTVDIGRGFESGLCIVIL 264
++ L+ TI + + ++V GLG + A DI R + I+
Sbjct: 442 LITGLSTTIGGAWNALIVGEYWSWGHTLLVAHGLGKYIAVATAAGDIPRALWGSFIMGIV 501
Query: 265 AIILDRLF 272
++ + LF
Sbjct: 502 VVVYNILF 509
>gnl|CDD|37503 KOG2292, KOG2292, KOG2292, Oligosaccharyltransferase, STT3 subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 751
Score = 31.1 bits (70), Expect = 0.39
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 96 TLSLVLVSTFISMFIGVPLGVLAAWYPRFYSI 127
+SLV V F+ + G +A W RFYS+
Sbjct: 305 VVSLVGVVVFVVVAALTATGYIAPWTGRFYSL 336
>gnl|CDD|33888 COG4132, COG4132, ABC-type uncharacterized transport system,
permease component [General function prediction only].
Length = 282
Score = 30.2 bits (68), Expect = 0.64
Identities = 37/146 (25%), Positives = 57/146 (39%), Gaps = 6/146 (4%)
Query: 99 LVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPG 158
L+ S S F GVPL ++ +FL ++ + L FGL
Sbjct: 96 LLTFSGVASNFAGVPLAFAFIATLGRNGLVTVFLKTLGGFNLYSTGFNLLSFFGL----- 150
Query: 159 IVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQ 218
+ + F IP V + +EAA GAT +Q +R V LP P ++ +
Sbjct: 151 TITYVYFQIPLMVLILTPAFDGLKKEWREAAAILGATGWQYWRMVALPILWPSLLGTFVL 210
Query: 219 TIMLSL-SMVVVTALVGSNGLGVPVL 243
+ + AL GS+ VP+L
Sbjct: 211 LFANAFGAYATAYALTGSSLNIVPIL 236
>gnl|CDD|33910 COG4168, SapB, ABC-type antimicrobial peptide transport system,
permease component [Defense mechanisms].
Length = 321
Score = 29.9 bits (67), Expect = 0.93
Identities = 55/240 (22%), Positives = 99/240 (41%), Gaps = 63/240 (26%)
Query: 96 TLSLVLVSTFISMFIGVPLGVLAA-----WYPRFYSIIRLFLDSMQTIPTFVYLIPALVL 150
T+ L ++ +++ +G+PLG++A W + S I L S IP F +L L+L
Sbjct: 77 TMELCFLAFGLALIVGIPLGMIAGVTRHKWLDKLISAISLLGFS---IPVF-WLALLLLL 132
Query: 151 FG---LGMVPGI----------------------------------------VATIVFSI 167
F LG +P + T+V S+
Sbjct: 133 FFSLHLGWLPVSGRYDLLYEIKPITGFALIDAWLSDSPYRTEMIQSAIQHLILPTLVLSV 192
Query: 168 PTSVRLTRLGIISTPPILKE----AACAFGATPFQVFRKVELPFAIPQIVASLTQ--TIM 221
+ + RL ST +L + AA G + F + R+ L A+P ++ L + M
Sbjct: 193 APTTEVIRLMRQSTEEVLNQNYIKAAATRGLSRFTILRRHVLRNALPPLIPQLGLQFSTM 252
Query: 222 LSLSMVVVTALVGSNGLGVPVLRALNTVD---IGRG-FESGLCIVILAIILDRLFSIPDP 277
L+L+M+ + G G+G ++ A+ D I G G ++I+ ++ D L ++ +P
Sbjct: 253 LTLAMITESVF-GWPGIGRWLINAIRQQDYASISAGVIVIGSLVIIVNVLSDILGAMANP 311
>gnl|CDD|33914 COG4174, COG4174, ABC-type uncharacterized transport system,
permease component [General function prediction only].
Length = 364
Score = 28.3 bits (63), Expect = 2.7
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 96 TLSLVLVSTFISMFIGVPLGVLAAWY--PRFYSIIRLFLDSMQTIPTFVYLIPALVLFGL 153
++SL L ST I I +PLG+ A RF + IP F++ I +VLF
Sbjct: 135 SISLGLWSTLIIYLISIPLGIRKAVRNGSRFDVWSSAVIIIGYAIPAFLFAILLIVLFAG 194
Query: 154 G 154
G
Sbjct: 195 G 195
>gnl|CDD|37782 KOG2571, KOG2571, KOG2571, Chitin synthase/hyaluronan synthase
(glycosyltransferases) [Cell wall/membrane/envelope
biogenesis].
Length = 862
Score = 28.0 bits (62), Expect = 2.8
Identities = 28/146 (19%), Positives = 47/146 (32%), Gaps = 15/146 (10%)
Query: 27 EWFCNILSFILLKAVNLVLFVLQYLPPLVFVCVVSLLVLMVKRSITIAVGTAMGLLLIIK 86
E N L + L L +L + LL+ RS V +LL I
Sbjct: 613 ENLHNSLRYHTLHVEMLYFAILGPFFIF-SMANFVLLLSFRGRSWNSTVHNLFPILLFI- 670
Query: 87 QGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIP 146
L + S F+ + P G + YS++ ++ S+
Sbjct: 671 ----------LLCLTFSLFMQLLGARPRGNVYMLAMSLYSVLIIY--SLLCAGVLAPASL 718
Query: 147 ALVLFGL-GMVPGIVATIVFSIPTSV 171
L G G + I++ + F + T
Sbjct: 719 FEGLLGTSGFIAIIISPLEFHMLTPG 744
>gnl|CDD|33937 COG4208, CysW, ABC-type sulfate transport system, permease
component [Inorganic ion transport and metabolism].
Length = 287
Score = 27.9 bits (62), Expect = 3.1
Identities = 36/137 (26%), Positives = 55/137 (40%), Gaps = 22/137 (16%)
Query: 92 ETTETLSLVLVSTFISMFIGVPLGVLAAW-YPRFYSIIRLFLDSMQTIP----------T 140
+ + L L+ I++ + V GV AAW RF + L ++ +P
Sbjct: 62 DALSAIKLTLLVALIAVPLNVVFGVAAAWAIARFEFPGKALLLTLIDLPFSVSPVVAGLV 121
Query: 141 FVYLIPALVLFG----------LGMVPGIV-ATIVFSIPTSVRLTRLGIISTPPILKEAA 189
+V L + G + VPGIV ATI + P R + +EAA
Sbjct: 122 YVLLFGSNGWLGGWLEAHDIQIIFAVPGIVLATIFVTCPFVARELIPLMQEQGTDEEEAA 181
Query: 190 CAFGATPFQVFRKVELP 206
GA+ +Q F +V LP
Sbjct: 182 LTLGASGWQTFWRVTLP 198
>gnl|CDD|32111 COG1928, PMT1, Dolichyl-phosphate-mannose--protein O-mannosyl
transferase [Posttranslational modification, protein
turnover, chaperones].
Length = 699
Score = 27.7 bits (61), Expect = 4.0
Identities = 17/109 (15%), Positives = 39/109 (35%), Gaps = 26/109 (23%)
Query: 28 WFCNILSFILLKAVNLVLFVLQYLPPLVFVCVVSLLVLMVKRSITIAVGTAMGLLLIIKQ 87
W + L + + ++ +++ YLP L F +A+ + +L
Sbjct: 603 WAAHYLPWFI---MSRQMYLHHYLPALYFAI--------------LALALVLDFIL---- 641
Query: 88 GYWQETTETLSLVLVSTFISMFIGV-----PLGVLAAWYPRFYSIIRLF 131
TL L++V+ F+++ I P+ P+ + +
Sbjct: 642 RRPSRERRTLGLIVVAIFVALVIYFFFWFSPVTYGLPLSPQEFRRLMWL 690
>gnl|CDD|33941 COG4214, XylH, ABC-type xylose transport system, permease component
[Carbohydrate transport and metabolism].
Length = 394
Score = 27.5 bits (61), Expect = 4.5
Identities = 42/234 (17%), Positives = 92/234 (39%), Gaps = 29/234 (12%)
Query: 31 NILSFILLKAVNLVLFVLQYLPPLVFVCVVSLLVLMVKRSITIAVGTAMGLLLIIKQGYW 90
N+ + +L A+ L++ Q L VF+ +L L+ + SI + A+G++L+I G
Sbjct: 22 NLRVYGMLIALALIMLFFQILTGGVFLSPRNLSNLLRQNSIIGIL--ALGMVLVIVAGEI 79
Query: 91 QETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRL---------------FLDSM 135
LS+ V + + + + + + F +
Sbjct: 80 D-----LSVGSVLGLLGAIAAILDVKWGLPWLGWPLPVTIIVTLVLGGLIGAWQGFWIAY 134
Query: 136 QTIPTFVYLIPALVLFGLGMVPGIV-ATIVFSIPTSVRLTRLGIISTPPILKEAACAFGA 194
+P+F+ + +++F G+ G+ T V P++ L G + A A
Sbjct: 135 LKVPSFIVTLAGMLVF-RGLTLGVTGGTTVAPYPSTFSLIGQGFLPAILGWILGLVALAA 193
Query: 195 TPFQVFR----KVELPFAIPQIVASLTQTIMLSLSMVVVTALVGS-NGLGVPVL 243
F R ++ +P A + + ++++ ++ + ++ S G+ PVL
Sbjct: 194 IVFAGLRGRRRRIRHGLEVPPFWAFVLKLLVIAAIILGLVYVLNSYRGVPNPVL 247
>gnl|CDD|33912 COG4171, SapC, ABC-type antimicrobial peptide transport system,
permease component [Defense mechanisms].
Length = 296
Score = 27.2 bits (60), Expect = 4.7
Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 93 TTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYS-IIRLFLDSMQTIPTFVYLIPALVLF 151
T T+ L+ T + G LG+ A S ++ LD++ +IP+ + I +
Sbjct: 95 TAPTVGGALLVTLAATICGGVLGIFAGATHGLRSAVLNHILDTLLSIPSLLLAIIVVAFA 154
Query: 152 GLGMVPGIVATIVFSIPTSVR 172
G + + A + +P +R
Sbjct: 155 GPSLSNAMFAVWLALLPRFIR 175
>gnl|CDD|176995 CHL00054, psaB, photosystem I P700 chlorophyll a apoprotein A2.
Length = 734
Score = 27.0 bits (60), Expect = 6.5
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 81 LLLIIKQGYWQETTETL 97
+ LI +GYWQE ETL
Sbjct: 662 MFLISWRGYWQELIETL 678
>gnl|CDD|35988 KOG0769, KOG0769, KOG0769, Predicted mitochondrial carrier protein
[Energy production and conversion].
Length = 308
Score = 26.5 bits (58), Expect = 8.5
Identities = 27/104 (25%), Positives = 40/104 (38%), Gaps = 21/104 (20%)
Query: 76 GTAMGLLLIIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDS- 134
T+ + IIK+ + L VLVSTFIS F+ Y YS +
Sbjct: 45 YTSDVMWEIIKEEGVLSLYQGLGPVLVSTFISNFV----------YFYTYSYFKAVASKG 94
Query: 135 --MQTIPTFVYLIPALVLFGLGMVPGIVATIVFSIPTSVRLTRL 176
Q+ T L+ LG G + ++ + P V TR+
Sbjct: 95 KLSQSSGTKADLL-------LGAAAGSI-NVLLTTPLWVVNTRM 130
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.331 0.146 0.438
Gapped
Lambda K H
0.267 0.0839 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,482,156
Number of extensions: 192217
Number of successful extensions: 1013
Number of sequences better than 10.0: 1
Number of HSP's gapped: 959
Number of HSP's successfully gapped: 184
Length of query: 281
Length of database: 6,263,737
Length adjustment: 93
Effective length of query: 188
Effective length of database: 4,254,100
Effective search space: 799770800
Effective search space used: 799770800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 57 (25.5 bits)