RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780341|ref|YP_003064754.1| proline/glycine betaine ABC transporter, permease protein [Candidatus Liberibacter asiaticus str. psy62] (281 letters) >gnl|CDD|33916 COG4176, ProW, ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism]. Length = 290 Score = 272 bits (696), Expect = 1e-73 Identities = 135/274 (49%), Positives = 186/274 (67%), Gaps = 1/274 (0%) Query: 7 APIPLGDYLQEFFVCLTQNGEWFCNILSFILLKAVNLVLFVLQYLPPLVFVCVVSLLVLM 66 A IP+G ++ E LT N + +S L ++ + +L +PPL+ + +V+LL Sbjct: 9 AKIPIGSWVDEAVDWLTTNFGPLFDAISNPLEFLLDGLENLLLAVPPLLLILIVALLAWF 68 Query: 67 VKRSITIAVGTAMGLLLIIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYS 126 + +A+ T +GLLLI G W +T +TL+LVL +T IS+ IG+PLG+ AA PR Y Sbjct: 69 ASG-LGLAIFTLLGLLLIGNLGLWDQTMQTLALVLTATLISIVIGIPLGIWAARSPRVYR 127 Query: 127 IIRLFLDSMQTIPTFVYLIPALVLFGLGMVPGIVATIVFSIPTSVRLTRLGIISTPPILK 186 I+R LD MQT+PTFVYLIPA++LFGLG VPG++AT++F++P +RLT LGI P L Sbjct: 128 IVRPILDLMQTMPTFVYLIPAVMLFGLGNVPGLIATVIFAMPPMIRLTNLGIRQVPAELI 187 Query: 187 EAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLGVPVLRAL 246 EAA AFGATP Q KV+LP A+P I+A + QTIML+LSMVV+ +++G+ GLG VLR + Sbjct: 188 EAADAFGATPRQKLFKVQLPLALPTIMAGINQTIMLALSMVVIASMIGAGGLGQEVLRGI 247 Query: 247 NTVDIGRGFESGLCIVILAIILDRLFSIPDPRDR 280 +DIG GFE+GL IVILAIILDRL + + Sbjct: 248 QRLDIGLGFEAGLAIVILAIILDRLTQAFGRKAK 281 >gnl|CDD|31367 COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]. Length = 221 Score = 115 bits (290), Expect = 1e-26 Identities = 61/185 (32%), Positives = 100/185 (54%) Query: 89 YWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPAL 148 T + L LVL++ I++ IGVPLG+L R ++ + +QTIP+ L + Sbjct: 24 LLALTLQHLLLVLLAVLIAILIGVPLGILVTRSRRLAGLVLGVANVLQTIPSLALLALLI 83 Query: 149 VLFGLGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFA 208 + G+G+ P I+A ++S+ VR T G+ S PP + EAA G T +Q KVELP A Sbjct: 84 PVLGIGLTPAIIALFLYSLLPIVRNTYTGLASVPPSVIEAARGMGMTRWQRLLKVELPLA 143 Query: 209 IPQIVASLTQTIMLSLSMVVVTALVGSNGLGVPVLRALNTVDIGRGFESGLCIVILAIIL 268 +P I+A + +++++ + AL+G+ GLG + R LN + + + +LAI+ Sbjct: 144 LPVILAGIRTAVVINIGTATIAALIGAGGLGDLIFRGLNLNNTALILAGAIPVALLAILA 203 Query: 269 DRLFS 273 D L Sbjct: 204 DVLLG 208 >gnl|CDD|30945 COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]. Length = 258 Score = 84.9 bits (210), Expect = 2e-17 Identities = 56/186 (30%), Positives = 93/186 (50%), Gaps = 1/186 (0%) Query: 90 WQETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPALV 149 +Q +L VL+ ++ +G+PLG+L ++ + ++ IP A++ Sbjct: 60 FQHLLASLLRVLLGFALAAVLGIPLGILMGLSRLLERLLDPLVQVLRPIPPLALAPLAIL 119 Query: 150 LFGLGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAI 209 FG+G IV ++ + + T G+ S P L E A GA+ +Q+ RKV LP A+ Sbjct: 120 WFGIGETSKIVIAVLGAFFPILINTLDGVRSVDPDLLELARTLGASRWQILRKVILPAAL 179 Query: 210 PQIVASLTQTIMLSLSMVVVTALVGSN-GLGVPVLRALNTVDIGRGFESGLCIVILAIIL 268 P I L I L+ +VV L+G++ GLG +L A N + F + L I +L ++L Sbjct: 180 PYIFTGLRIAIGLAWIGLVVAELLGASSGLGYLILDARNNLQTDLVFAAILVIALLGLLL 239 Query: 269 DRLFSI 274 DRL + Sbjct: 240 DRLVRL 245 >gnl|CDD|119394 cd06261, TM_PBP2, Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.. Length = 190 Score = 71.9 bits (177), Expect = 2e-13 Identities = 46/183 (25%), Positives = 90/183 (49%), Gaps = 10/183 (5%) Query: 96 TLSLVLVSTFISMFIGVPLGVLAAWY-PRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLG 154 TL L L++T +++ +G+ LG++ A + ++R +D + ++P+ V + ++LFG+ Sbjct: 4 TLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVL 63 Query: 155 MV---------PGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVEL 205 + P ++ ++ P + + R + S P L EAA A GA+P+Q+FR++ L Sbjct: 64 LGWGILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIIL 123 Query: 206 PFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLGVPVLRALNTVDIGRGFESGLCIVILA 265 P A+P I+ L +L + + +G P L I + G+ + Sbjct: 124 PLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPGTGLLLIFAILFPGDLGVAAAVAL 183 Query: 266 IIL 268 I+L Sbjct: 184 ILL 186 >gnl|CDD|32194 COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]. Length = 222 Score = 70.5 bits (173), Expect = 5e-13 Identities = 53/171 (30%), Positives = 84/171 (49%), Gaps = 16/171 (9%) Query: 84 IIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWY--------PRFYSIIRLFLDSM 135 + Q W+ T ETL +V VST + IG+PLGVL Y I+ ++ + Sbjct: 9 DLWQLLWRATLETLYMVFVSTLFAFLIGLPLGVLLFLTGPGGLLENKLLYRILSAIVNIL 68 Query: 136 QTIPTFVYLIPALVLF-------GLGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEA 188 ++IP F+ L+ AL+ +G IV + + P RL + + EA Sbjct: 69 RSIP-FIILLVALIPLTRLIVGTSIGTTAAIVPLTIGAAPFVARLVESALREVDKGVIEA 127 Query: 189 ACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLG 239 A A GA+P+Q+ RKV LP A+P +V+ +T T++ + + +G GLG Sbjct: 128 AQAMGASPWQIIRKVLLPEALPGLVSGITVTLISLIGYSAMAGAIGGGGLG 178 >gnl|CDD|33437 COG3639, COG3639, ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism]. Length = 283 Score = 67.2 bits (164), Expect = 5e-12 Identities = 44/185 (23%), Positives = 82/185 (44%), Gaps = 4/185 (2%) Query: 89 YWQETTETLSLVLVSTFISMFIGVPLGVLAA----WYPRFYSIIRLFLDSMQTIPTFVYL 144 +TL++ T ++ + +PL LAA +R LD ++TIP V+ Sbjct: 87 ILTALLQTLAIAFAGTLLAAILAIPLAFLAARNLSPKRWISFPVRRLLDFIRTIPELVWA 146 Query: 145 IPALVLFGLGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVE 204 + + FGLG G++A +++I +L + S EA A GA+ Q+ Sbjct: 147 LLFVAAFGLGPFAGVLALGIYTIGILGKLYAEALESIDTGPGEALRATGASRLQLILFGV 206 Query: 205 LPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLGVPVLRALNTVDIGRGFESGLCIVIL 264 LP P ++ ++ V LVG+ G+G ++ +++ + L I++L Sbjct: 207 LPQIKPNFISYSLYRFESNIRAAAVLGLVGAGGIGQRLMNSISLFQWDKVATIILPILVL 266 Query: 265 AIILD 269 I++D Sbjct: 267 VILID 271 >gnl|CDD|144205 pfam00528, BPD_transp_1, Binding-protein-dependent transport system inner membrane component. The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices. Length = 183 Score = 62.7 bits (153), Expect = 1e-10 Identities = 50/166 (30%), Positives = 86/166 (51%), Gaps = 8/166 (4%) Query: 111 GVPLGVLAAWYP--RFYSIIRLFLDSMQTIPTFV-----YLIPALVLFGLGMVPGIVATI 163 G+PLG++AA R ++R +D +Q +P+FV +I L + G G++P I+ + Sbjct: 1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVISILSILGHGILPAIILAL 60 Query: 164 VFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLS 223 + + + R + S P L EAA A GA+ +Q+FRK+ LP A+P I+ L + Sbjct: 61 LGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGA 120 Query: 224 LSMVVVTALVGSN-GLGVPVLRALNTVDIGRGFESGLCIVILAIIL 268 L V+ +GS GLG+ ++ A+ D L ++ ++L Sbjct: 121 LGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLL 166 >gnl|CDD|31366 COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]. Length = 289 Score = 57.6 bits (139), Expect = 3e-09 Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 9/150 (6%) Query: 96 TLSLVLVSTFISMFIGVPLGVLAAWYP-RFYSIIRLFLDSMQTIPTFVYLIPALVLFGLG 154 +L + L++ IS+ IG LG+LA ++ ++ D P+ + I + + G G Sbjct: 88 SLLIGLLAVLISLVIGTLLGLLAGYFGGWVDRVLMRITDIFLAFPSLLLAILLVAILGPG 147 Query: 155 MVPGIVATIVFSIPTSVRLTR---LGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQ 211 ++ I+A + P R+ R L + + EAA A GA+ ++ + LP +P Sbjct: 148 LLNLILALALVGWPGYARIVRGQVLSLREREYV--EAARALGASTLRIIFRHILPNVLPP 205 Query: 212 IVASLTQTIMLSLSMVVVTALVGSNGLGVP 241 ++ T I ++ A + GLGV Sbjct: 206 LIVLATLDIG---GAILAEAGLSFLGLGVQ 232 >gnl|CDD|30918 COG0573, PstC, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]. Length = 310 Score = 57.1 bits (138), Expect = 5e-09 Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 26/167 (15%) Query: 101 LVSTFISMFIGVPLGVLAAWY-------PRFYSIIRLFLDSMQTIPTFVY-------LIP 146 L+++ I++ I VP+G+ A + R +++ ++ + IP+ VY L P Sbjct: 85 LITSLIALLIAVPVGIGTAIFLSEYAPPRRLRRVLKPAIELLAGIPSVVYGFFGLFVLAP 144 Query: 147 AL------------VLFGLGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGA 194 L FG+ ++ + + +PT L+R + + P L+EAA A GA Sbjct: 145 FLRDVFGPPLGFNLGPFGISILTAGIVLAIMILPTIASLSRDALRAVPRSLREAAYALGA 204 Query: 195 TPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLGVP 241 T ++ RKV LP A IV ++ + +L + +V N +P Sbjct: 205 TKWETIRKVILPAARSGIVGAVILGLGRALGETMAVTMVIGNTARIP 251 >gnl|CDD|30926 COG0581, PstA, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]. Length = 292 Score = 57.1 bits (138), Expect = 5e-09 Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 9/134 (6%) Query: 96 TLSLVLVSTFISMFIGVPLGVLAAWYP---RFYSIIRLFLDSMQTIPTFVYLIPALVLF- 151 TL L+L++ I + +G+ G+ A Y R +IR +D + ++P+ VY + L F Sbjct: 76 TLYLILLAILIGVPLGIGAGIYLAEYAKKSRLTKVIRFAIDILASVPSIVYGLFGLGFFV 135 Query: 152 -----GLGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELP 206 G + G +A + +P +R T + + P L+EAA A GAT +Q KV LP Sbjct: 136 VTLGFGFSALAGALALALLMLPVVIRTTEEALRAVPDSLREAAYALGATKWQTIFKVVLP 195 Query: 207 FAIPQIVASLTQTI 220 A+P I+ + I Sbjct: 196 AALPGIITGVILAI 209 >gnl|CDD|31370 COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]. Length = 267 Score = 56.7 bits (137), Expect = 7e-09 Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 6/154 (3%) Query: 90 WQETTETLSLVLVSTFISMFIGVPLGVLAAWY-PRFYSIIRLFLDSMQTIPTFVYLIPAL 148 +L + L+S ++ +G + A Y R +++ + +P V I L Sbjct: 64 LSALWNSLLIALLSALLATLLGTLAALALARYRFRGKNLLEGLILLPLVVPDIVTGIALL 123 Query: 149 VLF-----GLGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKV 203 +LF G ++A IVF++P V + + L+EAA GA+P+Q FR+V Sbjct: 124 LLFAALGLPGGFWTIVLAHIVFALPFVVVVVSARLQGFDRSLEEAARDLGASPWQTFRRV 183 Query: 204 ELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNG 237 LP +P I++ LS V+T + G Sbjct: 184 TLPLILPGILSGALLAFTLSFDEFVITFFLAGPG 217 >gnl|CDD|30901 COG0555, CysU, ABC-type sulfate transport system, permease component [Posttranslational modification, protein turnover, chaperones]. Length = 274 Score = 53.3 bits (128), Expect = 7e-08 Identities = 47/210 (22%), Positives = 81/210 (38%), Gaps = 22/210 (10%) Query: 54 LVFVCVVSLLVLMVKRSITIAVGTAMGLLLIIKQGYWQETTETLSLVLVSTFISMFIGVP 113 L + LL+L++ S + +++G L L L++ F + + + Sbjct: 16 LGLTLLFLLLILLLPLSALVTKSSSLGWAGFWSALTSPRVLAALKLTLLTAFAATLLNLV 75 Query: 114 LGVLAAWYPRFY-----SIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPG---------- 158 G+ AW Y ++ +D +PT V I L+LFG + G Sbjct: 76 FGLPLAWVLVRYDFPGKRLVDALVDLPFALPTAVAGIALLLLFGPNGLLGSLLAPLGIKF 135 Query: 159 -------IVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQ 211 IVA S+P VR + + +EAA + GA+P Q FR+V LP +P Sbjct: 136 AFTPLGVIVAMFFVSLPFVVRTVQPVLEEIDREYEEAARSLGASPLQTFRRVILPLLLPA 195 Query: 212 IVASLTQTIMLSLSMVVVTALVGSNGLGVP 241 ++A + S+ ++ N Sbjct: 196 LLAGFILSFARSIGEFGAVLIIAGNTPYKT 225 >gnl|CDD|31371 COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]. Length = 540 Score = 51.4 bits (123), Expect = 2e-07 Identities = 55/202 (27%), Positives = 90/202 (44%), Gaps = 21/202 (10%) Query: 54 LVFVCVVSLLVLMVKRSITIAVGTAMGLLLIIKQGY-WQETTETLSLVLVSTFISMFIGV 112 LV + V L+ + ++++ G L ++ Y W+ TL L ++ T +S+ +G+ Sbjct: 18 LVALFVALPLLAVFAAALSLGGGAFDALAAVLSDPYLWRVLANTLILAVLVTLLSVVLGI 77 Query: 113 PLGVLAAWYP-RFYSIIRLFLDSMQTIPTFVYLIPALVLFG------------------- 152 PL L + Y ++R L IP FV + + LFG Sbjct: 78 PLAWLLSRYDFPGRRLLRWLLALPLVIPPFVVALAWISLFGPSGPLAALLELLGFESPSI 137 Query: 153 LGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQI 212 G+ ++A + F+ P + L + + PP L+EAA GA+ +QVFRKV LP P I Sbjct: 138 YGLGGILLALVFFNYPLAYLLVLAALETIPPSLEEAARTLGASRWQVFRKVTLPLLRPAI 197 Query: 213 VASLTQTIMLSLSMVVVTALVG 234 A ML L+ ++G Sbjct: 198 AAGALLVFMLCLADFGTPLILG 219 Score = 51.4 bits (123), Expect = 3e-07 Identities = 53/228 (23%), Positives = 98/228 (42%), Gaps = 12/228 (5%) Query: 51 LPPLVFVCVVSLLVLMVKRSITIAVGTAMGLLLIIKQGYWQETTETLSLVLVSTFISMFI 110 L L+ ++ L+ +V S + G + L+L Q +WQ +L L L + +++ + Sbjct: 294 LIVLLLFLILLPLLAVVLPSFVLNWGRPLSLVLASPQ-FWQALLNSLLLALAAALLAVVL 352 Query: 111 GVPLGVLAAWYPRFYSIIRLFLDSM-QTIPTFV----YLIPALVLFGLGMVPG------I 159 + L S + L + +P V L+ GL P + Sbjct: 353 ALLLAYAVRRLRSRLSRLLERLSMLPLAVPGVVLALGLLLLFRAPDGLLYQPLYTLLILV 412 Query: 160 VATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQT 219 +A + +P +VR R + P L+EAA + GA+ + FR++ LP P ++A+ Sbjct: 413 LAYALRFLPFAVRSLRAALRQIDPSLEEAARSLGASGLRRFRRITLPLLRPGLLAAAALV 472 Query: 220 IMLSLSMVVVTALVGSNGLGVPVLRALNTVDIGRGFESGLCIVILAII 267 LS+ + T L+GS G + N + GR ++ +IL ++ Sbjct: 473 FALSIGELSATLLLGSPGTRTLTVYIYNLLSDGRYGDAAALALILLVV 520 >gnl|CDD|33901 COG4149, ModC, ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism]. Length = 225 Score = 49.8 bits (119), Expect = 9e-07 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 19/170 (11%) Query: 90 WQETTETLSLVLVSTFISMFIGVPLG-VLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPAL 148 +L + L+ST + + +G+ L +LA R S++ + +P V L Sbjct: 6 LTALLLSLKVALISTLLLLPLGIALAYLLARRRFRGKSLLESLVLLPLVLPPVVLGFLLL 65 Query: 149 VLFGLGMVPG------------------IVATIVFSIPTSVRLTRLGIISTPPILKEAAC 190 VLFG G ++A++V S+P VR RL + L+EAA Sbjct: 66 VLFGRNGFIGQFLEDWFGLSLAFSWQGAVLASVVVSLPLMVRPLRLAFEAIDRELEEAAR 125 Query: 191 AFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSNGLGV 240 GA+ ++VF ++ LP A+P I+A + + +L T + N G Sbjct: 126 TLGASRWEVFFRITLPLALPGILAGVILSFARALGEFGATLMFAGNIPGE 175 >gnl|CDD|31108 COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]. Length = 222 Score = 47.8 bits (114), Expect = 3e-06 Identities = 49/180 (27%), Positives = 78/180 (43%), Gaps = 13/180 (7%) Query: 96 TLSLVLVSTFISMFIGVPLGVLAAWYPRFYS-IIRLFLDSMQTIPTFVYLI----PALVL 150 TL L L+S + + +G+ L ++ + + R +++ + P V L L L Sbjct: 25 TLLLTLLSIVLGLVLGLLLALMRLSGNKPLRWLARAYVEIFRGTPLLVQLFFIYFGLLPL 84 Query: 151 FGLGMVPGIVATIVFSIPTSVRLT---RLGIISTPPILKEAACAFGATPFQVFRKVELPF 207 G+ + P A I S+ + L R GI S P EAA A G T +Q R V LP Sbjct: 85 LGIELDPFTAAVIALSLNSGAYLAEIVRAGIQSVPKGQWEAARALGLTYWQTMRYVILPQ 144 Query: 208 AIPQIVASLTQTIMLSLSMVVVTALVGSNGLGVPVLRALNTVDIGRGFESGLCIVILAII 267 A+ I+ L + S++ T+LV +GV L + R F ++ A+I Sbjct: 145 ALRVILPPLGNQFI---SLIKDTSLVSV--IGVVELTRAAQIIAARTFRPFEVYLLAALI 199 >gnl|CDD|30946 COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]. Length = 317 Score = 46.2 bits (110), Expect = 1e-05 Identities = 48/221 (21%), Positives = 92/221 (41%), Gaps = 38/221 (17%) Query: 96 TLSLVLVSTFISMFIGVPLGVLAAWYP--RFYSIIRLFLDSMQTIPTFVYLIPALVLFGL 153 TL L LV+ +++ +G+PLG+LAA ++R+ +IP+F + ++LF + Sbjct: 98 TLELALVALILAVLLGIPLGILAALKRGSWIDRLLRVLSLLGISIPSFWLGLLLILLFSV 157 Query: 154 G------------------------MVPGIVATIVFSIPTSVRLTRLGIISTPPILKE-- 187 ++ + + S+ RLTR ++ L + Sbjct: 158 KLGWLPVGGRGSAGSWDSFLDALKHLILPALTLGLVSLAGIARLTRSSMLEV---LNQDY 214 Query: 188 --AACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALV-GSNGLGVPVLR 244 A A G + ++ K L A+ ++ L + L VV V GLG ++ Sbjct: 215 VRTARAKGLSERRILFKHALRNALLPVITVLGLQLGGLLGGAVVVETVFSWPGLGRLLVD 274 Query: 245 ALNTVDI----GRGFESGLCIVILAIILDRLFSIPDPRDRI 281 A+ D G L +++ +++D L+++ DPR R+ Sbjct: 275 AILNRDYPVVQGIVLVIALLVILGNLLVDILYALLDPRIRL 315 >gnl|CDD|31369 COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]. Length = 287 Score = 44.8 bits (106), Expect = 2e-05 Identities = 56/227 (24%), Positives = 90/227 (39%), Gaps = 30/227 (13%) Query: 37 LLKAVNLVLFVLQYLPPLVFVCVVSLLVLMVKRSITIAVGTAMGLLLII-KQGYWQETTE 95 LL A L+ +L +L PL+ V V S L+ ++ V T ++ Y Sbjct: 11 LLIAPPLLWLLLFFLLPLLIVLVPSFLLPLLSFFDYSGVFTLGNYARLLTDSLYLTVLLR 70 Query: 96 TLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLI---------- 145 +L + + T I + +G P+ A P + + L L +P + L+ Sbjct: 71 SLWIAALVTLICLLLGYPVAYFLARSPPRWRNLLLLL---VILPFWTSLLIRTYAWIVIL 127 Query: 146 -------PALVLFGLGMVPG---------IVATIVFSIPTSVRLTRLGIISTPPILKEAA 189 AL+ GL P I+ + +P + + P L EAA Sbjct: 128 GRNGLINQALLALGLIDEPLRLLYTETAVIIGMVYIYLPFMILPLYAALEKIDPSLLEAA 187 Query: 190 CAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALVGSN 236 GA+PFQ FR+V LP ++P I+A + +L V AL+G Sbjct: 188 RDLGASPFQTFRRVILPLSLPGIIAGSLLVFIPALGSFVTPALLGGP 234 >gnl|CDD|30744 COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]. Length = 281 Score = 44.8 bits (106), Expect = 3e-05 Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 6/142 (4%) Query: 88 GYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQT-IPTFVYLIP 146 G+ + +L + + ST +S+ + A + + L + +P V LIP Sbjct: 70 GFLRYFLNSLIVAVGSTVLSLLLSSLAAYALARFRFKGRKLLFLLLLLTLMLPAQVLLIP 129 Query: 147 ALVLFG-LGMV----PGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFR 201 +L LG++ I+ + F +P ++ L R + P L+EAA GA+ FQ+F Sbjct: 130 LYLLMRKLGLLNTYWGLILPYLAFGLPFAIFLLRQFFRTIPKELEEAARIDGASEFQIFF 189 Query: 202 KVELPFAIPQIVASLTQTIMLS 223 K+ LP A P + A T + + Sbjct: 190 KIVLPLAKPGLAAVAIFTFIGA 211 >gnl|CDD|33626 COG3833, MalG, ABC-type maltose transport systems, permease component [Carbohydrate transport and metabolism]. Length = 282 Score = 37.8 bits (88), Expect = 0.003 Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 10/133 (7%) Query: 89 YWQETTETLSLVLVSTFISMFIGVPLGVLAAWYP---RFYSIIRLFLDSMQTIPTFVYLI 145 Y +L + L++ I++ + + Y R Y + + +Q P LI Sbjct: 71 YLLWLWNSLIVALITAAITVALVTLAAYAFSRYRFKGRKYLLKFFLI--LQMFPGVAALI 128 Query: 146 PALVLFG-LGMVPGIVATIVF----SIPTSVRLTRLGIISTPPILKEAACAFGATPFQVF 200 VL LG++ + I+ +IP + L + + P L EAA GAT FQ+F Sbjct: 129 ALYVLLKLLGLLNTLWGLILAYLGGAIPMNTWLIKGYFDTIPKSLDEAAKIDGATRFQIF 188 Query: 201 RKVELPFAIPQIV 213 R++ LP + P + Sbjct: 189 RRILLPLSKPILA 201 >gnl|CDD|33906 COG4160, ArtM, ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism]. Length = 228 Score = 37.5 bits (87), Expect = 0.004 Identities = 38/157 (24%), Positives = 67/157 (42%), Gaps = 24/157 (15%) Query: 96 TLSLVLVSTFISMFIGVPLGVLAAWYPRFYSI-IRLFLDSMQTIPTFVYLIPALVLFGLG 154 TL L+++S I + +PL + R+ S R + + P V L L+ +GLG Sbjct: 20 TLWLLIISLVIGFVLALPLALARVSKNRWVSWPARAYTYVFRGTPLLVQLF--LIYYGLG 77 Query: 155 MVPGIV---------------ATIVFSIPTSVRLTRL---GIISTPPILKEAACAFGATP 196 I A + ++ T+ T + I + P EAA A G + Sbjct: 78 QFEWIRESIFLWPFLREAWFCAVLALTLNTAAYTTEIFRGAIRAVPRGQWEAARALGMSR 137 Query: 197 FQVFRKVELPFAIPQIVASLTQTIMLSLSMVVVTALV 233 F+ R++ LP A+ + + + + ++L M+ TAL Sbjct: 138 FKTLRRIILPSALRRALPAYSNEVIL---MLKSTALA 171 >gnl|CDD|31368 COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]. Length = 295 Score = 36.4 bits (84), Expect = 0.009 Identities = 50/217 (23%), Positives = 79/217 (36%), Gaps = 26/217 (11%) Query: 36 ILLKAVNLVLFVLQYLPPLVFVCVVSLLVLMVKRSITIAVGTAMGLLLIIKQGYWQETTE 95 LL A L+L ++ +L PL+ +S + + VG A L +W Sbjct: 13 YLLLAPALLLLLVFFLYPLILTLYLSFTNYDLLGPPSTFVGLANYERLFSDPTFWNALKN 72 Query: 96 TLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVY------------ 143 TL ++S + + +G+ L +L R R I + V Sbjct: 73 TLVFTVISVPLQLVLGLLLALLLNRKLRGRGFFRTLFFLPWAISSVVAGLIWKWLFNPSF 132 Query: 144 --LIPALVLFGLGMVPG------------IVATIVFSIPTSVRLTRLGIISTPPILKEAA 189 L L+L GL I+ ++ + L G+ S P L EAA Sbjct: 133 GLLNSLLLLLGLIPDINWLSDPNTALFAVIIVSVWKGTGFVMLLFLAGLQSIPKELYEAA 192 Query: 190 CAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSLSM 226 GA+P+Q FRK+ LP P I L + + + Sbjct: 193 RIDGASPWQRFRKITLPLLRPVIFFVLILRTIFAFQV 229 >gnl|CDD|34228 COG4590, COG4590, ABC-type uncharacterized transport system, permease component [General function prediction only]. Length = 733 Score = 35.8 bits (82), Expect = 0.013 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 2/85 (2%) Query: 167 IPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQTIMLSL-- 224 IPT + I S P L + + A GATP+Q V L A P I +++ + ++ Sbjct: 596 IPTIFSIAEDAIFSVPKSLSDGSLALGATPWQTLIYVVLLTASPGIFSAIMIGLGRAVGE 655 Query: 225 SMVVVTALVGSNGLGVPVLRALNTV 249 +M+V+ A + L + + T+ Sbjct: 656 TMIVLMATGNTPLLDWNIFEGMRTL 680 >gnl|CDD|164564 CHL00187, cysT, sulfate transport protein; Provisional. Length = 237 Score = 35.8 bits (83), Expect = 0.014 Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 4/88 (4%) Query: 160 VATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQT 219 +A I S P VR + + L+EAA + GA+P+Q F KV P IP ++ L T Sbjct: 142 LAMIFVSFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALT 201 Query: 220 IMLSLSMVVVTALVGSN----GLGVPVL 243 ++ ++ SN L VL Sbjct: 202 FSRAIGEYGSIVIISSNIPFKDLVASVL 229 >gnl|CDD|34591 COG4986, COG4986, ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism]. Length = 523 Score = 33.7 bits (77), Expect = 0.061 Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 13/131 (9%) Query: 96 TLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPT----------FVYLI 145 T +L++ IS+ G L A RF +I LD +Q++P FVYL Sbjct: 14 TAGRMLLAILISILTGWFLAYAAIKSKRFENIYIPVLDVLQSVPVLGFFPIVLIFFVYLF 73 Query: 146 PALVLFGLGMVPGIVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVEL 205 P + L + ++ ++I S + + P L E A + + ++ + Sbjct: 74 PGPLGVELAADFLVFTSVAWNIWFSEYQS---FKTVPSDLLEVARNYRLSFLLRMARLYI 130 Query: 206 PFAIPQIVASL 216 PFA+P I A+L Sbjct: 131 PFAMPGIAANL 141 Score = 31.8 bits (72), Expect = 0.22 Identities = 39/188 (20%), Positives = 70/188 (37%), Gaps = 11/188 (5%) Query: 96 TLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYL-IPALVLFGLG 154 V+V +S I + LG A PR I + + + P +Y + + Sbjct: 322 DYLRVVVILALSFLISIFLGYSIALRPRVEGIGQPLIQFLAAFPAPIYFPLLFAAIKTFI 381 Query: 155 MVPGIVATIVFSIPT---SVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQ 211 + P I + + I T G + P EAA + + +R++ LP P Sbjct: 382 LTPEIWLSPLGFIGTFYYIFYNVIAGAKALPVEYFEAAKNYNLGGWAKWRRIILPGTFPY 441 Query: 212 IVASLTQTIMLSLSMVVVTALVGSN-------GLGVPVLRALNTVDIGRGFESGLCIVIL 264 ++ L+ TI + + ++V GLG + A DI R + I+ Sbjct: 442 LITGLSTTIGGAWNALIVGEYWSWGHTLLVAHGLGKYIAVATAAGDIPRALWGSFIMGIV 501 Query: 265 AIILDRLF 272 ++ + LF Sbjct: 502 VVVYNILF 509 >gnl|CDD|37503 KOG2292, KOG2292, KOG2292, Oligosaccharyltransferase, STT3 subunit [Posttranslational modification, protein turnover, chaperones]. Length = 751 Score = 31.1 bits (70), Expect = 0.39 Identities = 12/32 (37%), Positives = 17/32 (53%) Query: 96 TLSLVLVSTFISMFIGVPLGVLAAWYPRFYSI 127 +SLV V F+ + G +A W RFYS+ Sbjct: 305 VVSLVGVVVFVVVAALTATGYIAPWTGRFYSL 336 >gnl|CDD|33888 COG4132, COG4132, ABC-type uncharacterized transport system, permease component [General function prediction only]. Length = 282 Score = 30.2 bits (68), Expect = 0.64 Identities = 37/146 (25%), Positives = 57/146 (39%), Gaps = 6/146 (4%) Query: 99 LVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIPALVLFGLGMVPG 158 L+ S S F GVPL ++ +FL ++ + L FGL Sbjct: 96 LLTFSGVASNFAGVPLAFAFIATLGRNGLVTVFLKTLGGFNLYSTGFNLLSFFGL----- 150 Query: 159 IVATIVFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQVFRKVELPFAIPQIVASLTQ 218 + + F IP V + +EAA GAT +Q +R V LP P ++ + Sbjct: 151 TITYVYFQIPLMVLILTPAFDGLKKEWREAAAILGATGWQYWRMVALPILWPSLLGTFVL 210 Query: 219 TIMLSL-SMVVVTALVGSNGLGVPVL 243 + + AL GS+ VP+L Sbjct: 211 LFANAFGAYATAYALTGSSLNIVPIL 236 >gnl|CDD|33910 COG4168, SapB, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]. Length = 321 Score = 29.9 bits (67), Expect = 0.93 Identities = 55/240 (22%), Positives = 99/240 (41%), Gaps = 63/240 (26%) Query: 96 TLSLVLVSTFISMFIGVPLGVLAA-----WYPRFYSIIRLFLDSMQTIPTFVYLIPALVL 150 T+ L ++ +++ +G+PLG++A W + S I L S IP F +L L+L Sbjct: 77 TMELCFLAFGLALIVGIPLGMIAGVTRHKWLDKLISAISLLGFS---IPVF-WLALLLLL 132 Query: 151 FG---LGMVPGI----------------------------------------VATIVFSI 167 F LG +P + T+V S+ Sbjct: 133 FFSLHLGWLPVSGRYDLLYEIKPITGFALIDAWLSDSPYRTEMIQSAIQHLILPTLVLSV 192 Query: 168 PTSVRLTRLGIISTPPILKE----AACAFGATPFQVFRKVELPFAIPQIVASLTQ--TIM 221 + + RL ST +L + AA G + F + R+ L A+P ++ L + M Sbjct: 193 APTTEVIRLMRQSTEEVLNQNYIKAAATRGLSRFTILRRHVLRNALPPLIPQLGLQFSTM 252 Query: 222 LSLSMVVVTALVGSNGLGVPVLRALNTVD---IGRG-FESGLCIVILAIILDRLFSIPDP 277 L+L+M+ + G G+G ++ A+ D I G G ++I+ ++ D L ++ +P Sbjct: 253 LTLAMITESVF-GWPGIGRWLINAIRQQDYASISAGVIVIGSLVIIVNVLSDILGAMANP 311 >gnl|CDD|33914 COG4174, COG4174, ABC-type uncharacterized transport system, permease component [General function prediction only]. Length = 364 Score = 28.3 bits (63), Expect = 2.7 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 2/61 (3%) Query: 96 TLSLVLVSTFISMFIGVPLGVLAAWY--PRFYSIIRLFLDSMQTIPTFVYLIPALVLFGL 153 ++SL L ST I I +PLG+ A RF + IP F++ I +VLF Sbjct: 135 SISLGLWSTLIIYLISIPLGIRKAVRNGSRFDVWSSAVIIIGYAIPAFLFAILLIVLFAG 194 Query: 154 G 154 G Sbjct: 195 G 195 >gnl|CDD|37782 KOG2571, KOG2571, KOG2571, Chitin synthase/hyaluronan synthase (glycosyltransferases) [Cell wall/membrane/envelope biogenesis]. Length = 862 Score = 28.0 bits (62), Expect = 2.8 Identities = 28/146 (19%), Positives = 47/146 (32%), Gaps = 15/146 (10%) Query: 27 EWFCNILSFILLKAVNLVLFVLQYLPPLVFVCVVSLLVLMVKRSITIAVGTAMGLLLIIK 86 E N L + L L +L + LL+ RS V +LL I Sbjct: 613 ENLHNSLRYHTLHVEMLYFAILGPFFIF-SMANFVLLLSFRGRSWNSTVHNLFPILLFI- 670 Query: 87 QGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDSMQTIPTFVYLIP 146 L + S F+ + P G + YS++ ++ S+ Sbjct: 671 ----------LLCLTFSLFMQLLGARPRGNVYMLAMSLYSVLIIY--SLLCAGVLAPASL 718 Query: 147 ALVLFGL-GMVPGIVATIVFSIPTSV 171 L G G + I++ + F + T Sbjct: 719 FEGLLGTSGFIAIIISPLEFHMLTPG 744 >gnl|CDD|33937 COG4208, CysW, ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]. Length = 287 Score = 27.9 bits (62), Expect = 3.1 Identities = 36/137 (26%), Positives = 55/137 (40%), Gaps = 22/137 (16%) Query: 92 ETTETLSLVLVSTFISMFIGVPLGVLAAW-YPRFYSIIRLFLDSMQTIP----------T 140 + + L L+ I++ + V GV AAW RF + L ++ +P Sbjct: 62 DALSAIKLTLLVALIAVPLNVVFGVAAAWAIARFEFPGKALLLTLIDLPFSVSPVVAGLV 121 Query: 141 FVYLIPALVLFG----------LGMVPGIV-ATIVFSIPTSVRLTRLGIISTPPILKEAA 189 +V L + G + VPGIV ATI + P R + +EAA Sbjct: 122 YVLLFGSNGWLGGWLEAHDIQIIFAVPGIVLATIFVTCPFVARELIPLMQEQGTDEEEAA 181 Query: 190 CAFGATPFQVFRKVELP 206 GA+ +Q F +V LP Sbjct: 182 LTLGASGWQTFWRVTLP 198 >gnl|CDD|32111 COG1928, PMT1, Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]. Length = 699 Score = 27.7 bits (61), Expect = 4.0 Identities = 17/109 (15%), Positives = 39/109 (35%), Gaps = 26/109 (23%) Query: 28 WFCNILSFILLKAVNLVLFVLQYLPPLVFVCVVSLLVLMVKRSITIAVGTAMGLLLIIKQ 87 W + L + + ++ +++ YLP L F +A+ + +L Sbjct: 603 WAAHYLPWFI---MSRQMYLHHYLPALYFAI--------------LALALVLDFIL---- 641 Query: 88 GYWQETTETLSLVLVSTFISMFIGV-----PLGVLAAWYPRFYSIIRLF 131 TL L++V+ F+++ I P+ P+ + + Sbjct: 642 RRPSRERRTLGLIVVAIFVALVIYFFFWFSPVTYGLPLSPQEFRRLMWL 690 >gnl|CDD|33941 COG4214, XylH, ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]. Length = 394 Score = 27.5 bits (61), Expect = 4.5 Identities = 42/234 (17%), Positives = 92/234 (39%), Gaps = 29/234 (12%) Query: 31 NILSFILLKAVNLVLFVLQYLPPLVFVCVVSLLVLMVKRSITIAVGTAMGLLLIIKQGYW 90 N+ + +L A+ L++ Q L VF+ +L L+ + SI + A+G++L+I G Sbjct: 22 NLRVYGMLIALALIMLFFQILTGGVFLSPRNLSNLLRQNSIIGIL--ALGMVLVIVAGEI 79 Query: 91 QETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRL---------------FLDSM 135 LS+ V + + + + + + F + Sbjct: 80 D-----LSVGSVLGLLGAIAAILDVKWGLPWLGWPLPVTIIVTLVLGGLIGAWQGFWIAY 134 Query: 136 QTIPTFVYLIPALVLFGLGMVPGIV-ATIVFSIPTSVRLTRLGIISTPPILKEAACAFGA 194 +P+F+ + +++F G+ G+ T V P++ L G + A A Sbjct: 135 LKVPSFIVTLAGMLVF-RGLTLGVTGGTTVAPYPSTFSLIGQGFLPAILGWILGLVALAA 193 Query: 195 TPFQVFR----KVELPFAIPQIVASLTQTIMLSLSMVVVTALVGS-NGLGVPVL 243 F R ++ +P A + + ++++ ++ + ++ S G+ PVL Sbjct: 194 IVFAGLRGRRRRIRHGLEVPPFWAFVLKLLVIAAIILGLVYVLNSYRGVPNPVL 247 >gnl|CDD|33912 COG4171, SapC, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]. Length = 296 Score = 27.2 bits (60), Expect = 4.7 Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 1/81 (1%) Query: 93 TTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYS-IIRLFLDSMQTIPTFVYLIPALVLF 151 T T+ L+ T + G LG+ A S ++ LD++ +IP+ + I + Sbjct: 95 TAPTVGGALLVTLAATICGGVLGIFAGATHGLRSAVLNHILDTLLSIPSLLLAIIVVAFA 154 Query: 152 GLGMVPGIVATIVFSIPTSVR 172 G + + A + +P +R Sbjct: 155 GPSLSNAMFAVWLALLPRFIR 175 >gnl|CDD|176995 CHL00054, psaB, photosystem I P700 chlorophyll a apoprotein A2. Length = 734 Score = 27.0 bits (60), Expect = 6.5 Identities = 10/17 (58%), Positives = 12/17 (70%) Query: 81 LLLIIKQGYWQETTETL 97 + LI +GYWQE ETL Sbjct: 662 MFLISWRGYWQELIETL 678 >gnl|CDD|35988 KOG0769, KOG0769, KOG0769, Predicted mitochondrial carrier protein [Energy production and conversion]. Length = 308 Score = 26.5 bits (58), Expect = 8.5 Identities = 27/104 (25%), Positives = 40/104 (38%), Gaps = 21/104 (20%) Query: 76 GTAMGLLLIIKQGYWQETTETLSLVLVSTFISMFIGVPLGVLAAWYPRFYSIIRLFLDS- 134 T+ + IIK+ + L VLVSTFIS F+ Y YS + Sbjct: 45 YTSDVMWEIIKEEGVLSLYQGLGPVLVSTFISNFV----------YFYTYSYFKAVASKG 94 Query: 135 --MQTIPTFVYLIPALVLFGLGMVPGIVATIVFSIPTSVRLTRL 176 Q+ T L+ LG G + ++ + P V TR+ Sbjct: 95 KLSQSSGTKADLL-------LGAAAGSI-NVLLTTPLWVVNTRM 130 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.331 0.146 0.438 Gapped Lambda K H 0.267 0.0839 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 3,482,156 Number of extensions: 192217 Number of successful extensions: 1013 Number of sequences better than 10.0: 1 Number of HSP's gapped: 959 Number of HSP's successfully gapped: 184 Length of query: 281 Length of database: 6,263,737 Length adjustment: 93 Effective length of query: 188 Effective length of database: 4,254,100 Effective search space: 799770800 Effective search space used: 799770800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 57 (25.5 bits)