HHsearch alignment for GI: 254780342 and conserved domain: CHL00180

>CHL00180 rbcR LysR transcriptional regulator; Provisional.
Probab=93.78  E-value=0.56  Score=26.13  Aligned_cols=201  Identities=11%  Similarity=0.094  Sum_probs=115.5

Q ss_pred             CCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEE-EECCCCHHHHHHHHHCCCEE
Q ss_conf             45883799425886999999999999961069848998564057888851498139998-40464135666655304702
Q gi|254780342|r   23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMG-YWYPSLEKFIAPYLEEGSIK  101 (309)
Q Consensus        23 ~~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e-~w~p~~~~~~~~~~~~~~~~  101 (309)
T Consensus        92 ~~~g~lrI~~~~s~~~~~lp~~l~~f~~~~P~v~i~l~~~~~~~~~~~l~~~~~D~~i~~~~~~~~~--------~~~l~  163 (307)
T CHL00180         92 LQGGTLIIGASQTTGTYLMPRLIGLFRQKYPQIAVQLQVHSTRRIAWSVANGQIDLAIIGGEVPTEL--------KDNLQ  163 (307)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCEEEEEECCCCCCCC--------CCCEE
T ss_conf             1258601010406666643588999999888997278977999999999879800999757788666--------78549


Q ss_pred             EECCCCCCCEEEEEEEHHHH--HCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCH
Q ss_conf             30135668535678634464--1234553565555665442013578543200555876640354522100103665201
Q gi|254780342|r  102 LVAENLQGAKYMLAVNDVGF--ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS  179 (309)
Q Consensus       102 ~~~~~~~~~~~~~~v~~~~~--~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~  179 (309)
T Consensus       164 -~-~~l~~~~~~lv~~~~hpla~~~~v~~~dL~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  233 (307)
T CHL00180        164 -V-TPYAEDELALILPKSHPFAKLKKIQKEDLYR------LRFIALDSQSTIRKVIDNILIQNGIDSSRFKIE--MELNS  233 (307)
T ss_pred             -E-EEEECCCEEEEECCCCHHHCCCCCCHHHHHC------CCEEEECCCCCHHHHHHHHHHHCCCCCCCCEEE--EEECC
T ss_conf             -9-9943242799973898022399999999817------984871799968999999999769984554279--99780


Q ss_pred             HHHHHHHHHCCCCEEEEEECCCHHHHC----CCCEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHHHHHHC
Q ss_conf             899999996599369994124223201----585140078654677865835442777787488999998740
Q gi|254780342|r  180 FSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI  248 (309)
Q Consensus       180 ~a~l~~A~~~~~~~v~~~wsp~~~~~~----~dl~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L~~~  248 (309)
T Consensus       234 ~~~l~~~v~~g~Gia~---lP~~~v~~~~~~g~l~~~~~~~~~---~~r~i~lv~~~~-r~~s~a~~~F~~~l  299 (307)
T CHL00180        234 IEAIKNAVQSGLGAAF---VSVSAIEKELELGTLHWAKIENIT---IKRTLSIITNPN-RYRSKAAETFSKEI  299 (307)
T ss_pred             HHHHHHHHHHCCEEEE---CCHHHHHHHHHCCCEEEEECCCCC---CEEEEEEEEECC-CCCCHHHHHHHHHH
T ss_conf             9999999993994998---259999989877988999789998---504999999795-97799999999999