HHsearch alignment for GI: 254780342 and conserved domain: CHL00180
>CHL00180 rbcR LysR transcriptional regulator; Provisional.
Probab=93.78 E-value=0.56 Score=26.13 Aligned_cols=201 Identities=11% Similarity=0.094 Sum_probs=115.5
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEE-EECCCCHHHHHHHHHCCCEE
Q ss_conf 45883799425886999999999999961069848998564057888851498139998-40464135666655304702
Q gi|254780342|r 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMG-YWYPSLEKFIAPYLEEGSIK 101 (309)
Q Consensus 23 ~~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e-~w~p~~~~~~~~~~~~~~~~ 101 (309)
T Consensus 92 ~~~g~lrI~~~~s~~~~~lp~~l~~f~~~~P~v~i~l~~~~~~~~~~~l~~~~~D~~i~~~~~~~~~--------~~~l~ 163 (307)
T CHL00180 92 LQGGTLIIGASQTTGTYLMPRLIGLFRQKYPQIAVQLQVHSTRRIAWSVANGQIDLAIIGGEVPTEL--------KDNLQ 163 (307)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCEEEEEECCCCCCCC--------CCCEE
T ss_conf 1258601010406666643588999999888997278977999999999879800999757788666--------78549
Q ss_pred EECCCCCCCEEEEEEEHHHH--HCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCH
Q ss_conf 30135668535678634464--1234553565555665442013578543200555876640354522100103665201
Q gi|254780342|r 102 LVAENLQGAKYMLAVNDVGF--ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179 (309)
Q Consensus 102 ~~~~~~~~~~~~~~v~~~~~--~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~ 179 (309)
T Consensus 164 -~-~~l~~~~~~lv~~~~hpla~~~~v~~~dL~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 233 (307)
T CHL00180 164 -V-TPYAEDELALILPKSHPFAKLKKIQKEDLYR------LRFIALDSQSTIRKVIDNILIQNGIDSSRFKIE--MELNS 233 (307)
T ss_pred -E-EEEECCCEEEEECCCCHHHCCCCCCHHHHHC------CCEEEECCCCCHHHHHHHHHHHCCCCCCCCEEE--EEECC
T ss_conf -9-9943242799973898022399999999817------984871799968999999999769984554279--99780
Q ss_pred HHHHHHHHHCCCCEEEEEECCCHHHHC----CCCEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHHHHHHC
Q ss_conf 899999996599369994124223201----585140078654677865835442777787488999998740
Q gi|254780342|r 180 FSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI 248 (309)
Q Consensus 180 ~a~l~~A~~~~~~~v~~~wsp~~~~~~----~dl~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L~~~ 248 (309)
T Consensus 234 ~~~l~~~v~~g~Gia~---lP~~~v~~~~~~g~l~~~~~~~~~---~~r~i~lv~~~~-r~~s~a~~~F~~~l 299 (307)
T CHL00180 234 IEAIKNAVQSGLGAAF---VSVSAIEKELELGTLHWAKIENIT---IKRTLSIITNPN-RYRSKAAETFSKEI 299 (307)
T ss_pred HHHHHHHHHHCCEEEE---CCHHHHHHHHHCCCEEEEECCCCC---CEEEEEEEEECC-CCCCHHHHHHHHHH
T ss_conf 9999999993994998---259999989877988999789998---504999999795-97799999999999