HHsearch alignment for GI: 254780342 and conserved domain: COG0687
>COG0687 PotD Spermidine/putrescine-binding periplasmic protein [Amino acid transport and metabolism].
Probab=96.76 E-value=0.051 Score=32.91 Aligned_cols=174 Identities=14% Similarity=0.088 Sum_probs=80.7
Q ss_pred CCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCH-HHHHHHHHCCC--CEEEEEEE---------------
Q ss_conf 3458837994258869999999999999610698489985640-57888851498--13999840---------------
Q gi|254780342|r 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV-PVTFRSLKNKG--IDIFMGYW--------------- 83 (309)
Q Consensus 22 ~~~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~~-~~~~~al~~G~--iD~~~e~w--------------- 83 (309)
T Consensus 28 ~a~~~~l~v--~~w~gy~~~~-~~~~-F~k~tGi~V~~~~~~sne~~~ak~~~g~~~~Dvv~~s~~~~~~~~~~gll~~l 103 (363)
T COG0687 28 AAEGKTLNV--YNWGGYIDPA-LLKP-FEKETGIKVVYDTFDSNEEMLAKLKAGGGGYDVVVPSGYFVARLIKEGLLQPL 103 (363)
T ss_pred HHCCCEEEE--ECCCCCCCHH-HHHH-HHHHHCCEEEEECCCCHHHHHHHHHHCCCCCCEEECCHHHHHHHHHCCCCCCC
T ss_conf 625785999--6478755778-8998-99998997999538986999999980899988797188899999866756758
Q ss_pred ----CCCCHHHHHHHHHCCCEEEEC----CCCCCCEEEEEEEHHHHH--CCCCCHHHHHHHHHHH--HHCCC--------
Q ss_conf ----464135666655304702301----356685356786344641--2345535655556654--42013--------
Q gi|254780342|r 84 ----YPSLEKFIAPYLEEGSIKLVA----ENLQGAKYMLAVNDVGFA--LGIKSYQDIAKYKKEL--GAKIY-------- 143 (309)
Q Consensus 84 ----~p~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~v~~~~~~--~~i~~~~dl~~~~~~~--~~~~~-------- 143 (309)
T Consensus 104 D~skl~n~~~l~~~~~~~-~~~d~g~~y~vPy~~g~t~i~Yn~~~~~~~~~~~sW~~l~d~~~~~~~k~~~~~~~d~~~~ 182 (363)
T COG0687 104 DKSKLPNWKNLDPEFLNP-PKFDPGNKYSVPYFWGTTGIAYNTDKVKDAPPPTSWADLFDPEKFPGLKGKGVALLDDDRE 182 (363)
T ss_pred CHHHCCCHHHCCHHHHCC-CCCCCCCEECEEEEEEEEEEEEECCCCCCCCCCCCHHHHHCCHHHHHHCCCCCCCCCCCHH
T ss_conf 966664821169878357-7678888603167886469999800058999998899983842002232575301366057
Q ss_pred ---------CCCCCCCCCHHHHHHHHHCCCCCCC-EEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHC
Q ss_conf ---------5785432005558766403545221-00103665201899999996599369994124223201
Q gi|254780342|r 144 ---------GIEPGNEGNQRILDMINNNKFSLKG-FRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSD 206 (309)
Q Consensus 144 ---------g~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~~~~ 206 (309)
T Consensus 183 ~~~~al~~lg~~~n~~~~~~~~~a~~~-L~~~kp~~~~~~~~-----~~~~~~l~~Gev~~a~~w~g~~~~~~ 249 (363)
T COG0687 183 VFGAALALLGKSPNTTDPEDLKKAFDL-LDKLKPVNVYWFDG-----SQYVQLLANGEVVLAMGWSGDAAAAK 249 (363)
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHH-HHHHCCCEEEEECC-----HHHHHHHHCCCEEEEEEECHHHHHHH
T ss_conf 899999971899788998899999999-99727850899636-----27888986699789997777899986