HHsearch alignment for GI: 254780342 and conserved domain: COG1638
>COG1638 DctP TRAP-type C4-dicarboxylate transport system, periplasmic component [Carbohydrate transport and metabolism].
Probab=97.96 E-value=0.0019 Score=42.28 Aligned_cols=277 Identities=15% Similarity=0.129 Sum_probs=136.3
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCC--CCEEEECCC--CCHHHHHHHHHHHHHHHCCCCEEEEEE------CCHHHHHHH
Q ss_conf 9579999999999986303583458--837994258--869999999999999610698489985------640578888
Q gi|254780342|r 1 MYKILAVCLFLTTFSISYARDADSC--TPVRFADTG--WTDIAATTAMTSVILEEILGYKTNIKL------LAVPVTFRS 70 (309)
Q Consensus 1 mkk~~~~~~~~~~~~~~~~~~~~~~--~~I~ig~~~--wte~~v~a~i~~~iLE~~lGy~Ve~~~------~~~~~~~~a 70 (309)
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~p~~~~~~~fa~~v~ekt~G~l~i~vfP~~qLG~~~~~ie~ 80 (332)
T COG1638 1 MMKLLALLLALLLAAAALASAAAAAGALVLRFSHVTPEGHPKGKAAKKFAELVEEKTGGRLKIEVFPNSQLGGEAEMIEQ 80 (332)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHH
T ss_conf 95137899999999999777787401548875235799880789999999999987199389997667566876999999
Q ss_pred HHCCCCEEEEEEE------CCC------------CH-----------HHHHHHHHCCCEEEECCCCCCCEEEEEEEHHHH
Q ss_conf 5149813999840------464------------13-----------566665530470230135668535678634464
Q gi|254780342|r 71 LKNKGIDIFMGYW------YPS------------LE-----------KFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121 (309)
Q Consensus 71 l~~G~iD~~~e~w------~p~------------~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 121 (309)
T Consensus 81 l~~G~id~~~~s~~~l~~~~P~~~v~~lPflf~d~~~~~~~~~~~~g~~l~~~~e~~g~~~l~~~~~G~R~~t~~----- 155 (332)
T COG1638 81 LRSGTLDIGVVSLGFLAGLVPEFGVFDLPFLFRDEEHARRVLDSEFGEELLKSLEAKGLKGLAFWENGFRQFTSN----- 155 (332)
T ss_pred HHCCCCEEEECCCHHHCCCCCCCEEECCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEC-----
T ss_conf 965973078506523211387501224875518999999997138899999999976957999862752233346-----
Q ss_pred HCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 12345535655556654420135785432005558766403545221001036652018999999965993699941242
Q gi|254780342|r 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPH 201 (309)
Q Consensus 122 ~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~ 201 (309)
T Consensus 156 k~PI~~peDlk-------GlkiRv----~~s~~~~~~~~a~GA~-----P~pm~----f~Evy~aLqtGvVDGqEnp~~~ 215 (332)
T COG1638 156 KRPIKTPEDLK-------GLKIRV----PQSPLLLAMFKALGAN-----PTPMP----FAEVYTALQTGVVDGQENPLSN 215 (332)
T ss_pred CCCCCCHHHHC-------CCEEEC----CCCHHHHHHHHHCCCC-----CCCCC----HHHHHHHHHCCCCCCCCCCHHH
T ss_conf 78778968967-------984635----8988999999986998-----97788----8999999974970044176766
Q ss_pred HHHHC-CCC-EEECCCCCCCCCCHHHHHHHHCHHHHHHC-HHHHHHHHHC---------CCCHHHHHHHHHHHHHCCCCH
Q ss_conf 23201-585-14007865467786583544277778748-8999998740---------899899999999998459998
Q gi|254780342|r 202 PINSD-LNI-HYLPGGEEISGFGEASVYTVVRSDYLDKC-PNISRLLKNI---------KFSVALENEMMKLILNNKQDR 269 (309)
Q Consensus 202 ~~~~~-~dl-~~Ledp~~~~~~p~~~~~~vv~~~~~~~~-P~~~~~L~~~---------~ls~~~~~~l~~~v~~~g~~~ 269 (309)
T Consensus 216 i~~~k~~EVqky~t~tnH~--~~~~--~~~~s~~~w~~L~~e~q~il~~aa~e~~~~~~~~~~~~e~~~~e~lk~~Gv~v 291 (332)
T COG1638 216 IYSAKLYEVQKYLTLTNHI--YLPL--AVLVSKAFWDSLPEEDQTILLEAAKEAAEEQRKLVEELEDELLEKLKEAGVEV 291 (332)
T ss_pred HHCCCHHHHHHHHHHCCCC--CCCE--EEEECHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 6104265675665215665--5542--68973898830999999999999999999999999998999999999779989
Q ss_pred HH--HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 99--999999985999998754754567713799999874
Q gi|254780342|r 270 QF--VGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307 (309)
Q Consensus 270 ~~--vA~~wL~~n~~~~~~Wl~~~~~~~~~~~~~~~~~~~ 307 (309)
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~l~e~~~~~~ 330 (332)
T COG1638 292 VEPDAAEAFREAAKPVYDEFAKKAG-EIGAELIEAIEAAR 330 (332)
T ss_pred ECCCCHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHH
T ss_conf 7477369999999899999986441-55799999999873