HHsearch alignment for GI: 254780342 and conserved domain: COG1732
>COG1732 OpuBC Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) [Cell envelope biogenesis, outer membrane].
Probab=100.00 E-value=2.8e-45 Score=314.33 Aligned_cols=248 Identities=17% Similarity=0.164 Sum_probs=211.7
Q ss_pred CCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEE--CCHHHHHHHHHCCCCEEEEEEECCCCHHHHHH------
Q ss_conf 3458837994258869999999999999610698489985--64057888851498139998404641356666------
Q gi|254780342|r 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP------ 93 (309)
Q Consensus 22 ~~~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~--~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~------ 93 (309)
T Consensus 29 ~~~~~~I~VgsK~~tE~~IL~~m~~~lle~~-~~kv~~~~~lG~t~v~~~Al~~G~IDiYpEYTGt~~~~~lk~~~~~~~ 107 (300)
T COG1732 29 ASAAKTIVVGSKIFTEQYILGNILKQLLEKN-GIKVEDKTGLGGTAVVRNALKSGDIDIYPEYTGTALFSFLKKDPPASK 107 (300)
T ss_pred CCCCCCEEEECCCCCHHHHHHHHHHHHHHHC-CCCEEECCCCCCHHHHHHHHHCCCCCEEEEECCHHHHHHCCCCCCCCC
T ss_conf 2357887983477838899999999999865-991454168885299999997598776854323145663456764547
Q ss_pred ------------HHHCCCEEEECCCCCCCEEEEEEEHHHHH-CCCCCHHHHHHHHHHHHHCCCCCCCCCC-CCHHHHHHH
Q ss_conf ------------55304702301356685356786344641-2345535655556654420135785432-005558766
Q gi|254780342|r 94 ------------YLEEGSIKLVAENLQGAKYMLAVNDVGFA-LGIKSYQDIAKYKKELGAKIYGIEPGNE-GNQRILDMI 159 (309)
Q Consensus 94 ------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~i~~~~dl~~~~~~~~~~~~g~~~~~~-~~~~~~~~~ 159 (309)
T Consensus 108 dp~~~y~~vK~~~~k~~~l~wl~p~~~nNTyA~av~~~~A~~~~i~TiSDLak~~~~l---~~g~~~eF~~R~DG~~~l~ 184 (300)
T COG1732 108 DPKKVYETVKKLDAKQFKLVWLKPAGFNNTYALAVRKDVAEKYNLETISDLAKHSNQL---KLGADSEFAERADGLPALQ 184 (300)
T ss_pred CHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEECHHHHHHHCCCCHHHHHHHHHHC---EECCCHHHHCCCCCCHHHH
T ss_conf 9899999999988860797896546877605899619889881981699999866534---6227842313651228999
Q ss_pred HHCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHCCCCEEECCCCCCCCCCHHHHHHHHCHHHHHHCH
Q ss_conf 40354522100103665201899999996599369994124223201585140078654677865835442777787488
Q gi|254780342|r 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239 (309)
Q Consensus 160 ~~~~l~~~~~~~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~~~~~dl~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P 239 (309)
T Consensus 185 k~Yg~~~~~~-~~~m~~g----l~y~Al~~g~~d~~~~YsTDg~I~~~~L~VLkDDK~~f--P~Y~~apvvre~vlk~~P 257 (300)
T COG1732 185 KAYGFDFKPD-LRTMDGG----LTYQALKNGTVDAADAYSTDGRIAAYGLKVLKDDKGFF--PPYQAAPVVREEVLKKHP 257 (300)
T ss_pred HHHCCCCCCC-CEECCCH----HHHHHHHCCCCCEEEECCCCCCCCCCCCEEEECCCCCC--CCCCCCCEECHHHHHHCH
T ss_conf 9848766887-4433815----89999874997767631455221226857970687679--987656402187776798
Q ss_pred HHHHHHHHC--CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 999998740--89989999999999845999899999999985
Q gi|254780342|r 240 NISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280 (309)
Q Consensus 240 ~~~~~L~~~--~ls~~~~~~l~~~v~~~g~~~~~vA~~wL~~n 280 (309)
T Consensus 258 el~~~l~~l~~kid~~tMq~LNy~V~v~g~~~~~VA~dfL~~~ 300 (300)
T COG1732 258 ELKTILNKLSGKIDTETMQALNYRVDVEGKDPQKVAADFLKKK 300 (300)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
T ss_conf 8999998875458999999987776506999899999998509