HHsearch alignment for GI: 254780342 and conserved domain: COG2358
>COG2358 Imp TRAP-type uncharacterized transport system, periplasmic component [General function prediction only].
Probab=98.26 E-value=5.4e-06 Score=58.80 Aligned_cols=202 Identities=11% Similarity=0.066 Sum_probs=121.5
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHH-HHHHHHHHHHHHH-CCCCEEEEEE-CCHHHHHHHHHCCCCE
Q ss_conf 95799999999999863035834588379942588699-9999999999961-0698489985-6405788885149813
Q gi|254780342|r 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDI-AATTAMTSVILEE-ILGYKTNIKL-LAVPVTFRSLKNKGID 77 (309)
Q Consensus 1 mkk~~~~~~~~~~~~~~~~~~~~~~~~I~ig~~~wte~-~v~a~i~~~iLE~-~lGy~Ve~~~-~~~~~~~~al~~G~iD 77 (309)
T Consensus 1 ~~~l~l~~la~~~~~~~~~~~~~~~~~itigTG~~~G~YY~ig~~ia~~~~~~~~~i~~~v~~tggSv~Nl~~i~~Ge~d 80 (321)
T COG2358 1 MKNLALAALAAAGAGSVSTGPAAEPKFITIGTGSTGGVYYPIGGGLAQLLNKDEKGIECSVVPTGGSVENLKLLASGEAD 80 (321)
T ss_pred CCEEEHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCEEEEHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHCCCCC
T ss_conf 95021689899873445656666763799960699862230378999998514778189996065429999867537625
Q ss_pred EEEEEECCCCHHH-----HHHHHHCCCEEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 9998404641356-----66655304702301356685356786344641234553565555665442013578543200
Q gi|254780342|r 78 IFMGYWYPSLEKF-----IAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGN 152 (309)
Q Consensus 78 ~~~e~w~p~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~ 152 (309)
T Consensus 81 ~alvq~d~a~~ay~G~g~f~~~~~~~~lr~v~~lype~~~-vv~r~---d~~Ikti~DL~------GKrV~iG~~gSgt~ 150 (321)
T COG2358 81 LALVQSDVAYEAYNGTGSFEGKGKDENLRAVAALYPEPFH-VVTRK---DAGIKTIADLK------GKRVAIGPPGSGTE 150 (321)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHEECCCCEEE-EEEEC---CCCCCEEHHCC------CCEEEECCCCCCCH
T ss_conf 3566678999987185311456655143322130542089-99966---88965601038------98886269997408
Q ss_pred HHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCHH------HHCCCCEEECCC
Q ss_conf 555876640354522100103665201899999996599369994124223------201585140078
Q gi|254780342|r 153 QRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPI------NSDLNIHYLPGG 215 (309)
Q Consensus 153 ~~~~~~~~~~~l~~~~~~~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~------~~~~dl~~Ledp 215 (309)
T Consensus 151 ~~a~~il~a~Gi~~~~~~~~~~~~~---a~~~~~l~~g~iDA~~~~~G~p~~ai~el~~~~~i~lv~i~ 216 (321)
T COG2358 151 ATARQILEALGITYDDYELDLGLGD---AESADALKNGTIDAAFYVAGVPNPAISELATTCDIVLVPIS 216 (321)
T ss_pred HHHHHHHHHCCCCCCCHHHHHHCCC---HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHCCEEEEECC
T ss_conf 8999999973999762456663373---06578763796328998158888319999861775899378