HHsearch alignment for GI: 254780342 and conserved domain: PRK09791
>PRK09791 putative DNA-binding transcriptional regulator; Provisional.
Probab=94.93 E-value=0.32 Score=27.73 Aligned_cols=198 Identities=13% Similarity=0.158 Sum_probs=108.3
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEEE
Q ss_conf 45883799425886999999999999961069848998564057888851498139998404641356666553047023
Q gi|254780342|r 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKL 102 (309)
Q Consensus 23 ~~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~~~ 102 (309)
T Consensus 92 ~~~G~l~Ig~~~~~~~~~lp~~l~~f~~~~P~v~i~i~~~~~~~~~~~l~~g~~D~~i~~~~~~~~~--------~~l~~ 163 (302)
T PRK09791 92 QLAGQINIGMGASISRSLMPAVISRFHQQHPQVKVRIMEGQLVSMINELRQGELDFTINTYYQGPYD--------HEFTF 163 (302)
T ss_pred CCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCC--------CCEEE
T ss_conf 7663399986268898711999999999887977999989999999999879977899656788788--------76479
Q ss_pred ECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHH
Q ss_conf 01356685356786344641234553565555665442013578543200555876640354522100103665201899
Q gi|254780342|r 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182 (309)
Q Consensus 103 ~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~a~ 182 (309)
T Consensus 164 --~~l~~~~~~~v~~~~hpl~~~~~l~~l~~~------~~~~~~~~~~~~~~~~~~~~~~g~~p~-~~~~~~~----~~~ 230 (302)
T PRK09791 164 --EKLLEKQFAIFCRPGHPAIGARSIKQLLDY------SWTMPTPHGSYYKQLSELLDDQAQTPQ-VGVVCET----FSA 230 (302)
T ss_pred --EEEEEEEEEEEECCCCCCCCCCCHHHHHCC------CEEEECCCCCHHHHHHHHHHHCCCCCC-EEEEECC----HHH
T ss_conf --997740159998389843579899998479------938757999799999999996799985-6999992----999
Q ss_pred HHHHHHCCCCEEEEEECCCHH----HHCCCCEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHHHHHHC
Q ss_conf 999996599369994124223----201585140078654677865835442777787488999998740
Q gi|254780342|r 183 IRRDQRNNIPAVFLSWEPHPI----NSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI 248 (309)
Q Consensus 183 l~~A~~~~~~~v~~~wsp~~~----~~~~dl~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L~~~ 248 (309)
T Consensus 231 ~~~lv~~g~gv~i---lp~~~~~~~~~~~~lv~lpl~~~~---~~~~~~lv~r~~~-~~spa~~~fi~~l 293 (302)
T PRK09791 231 CISLVAKSDFLSI---LPEEMGCDPLHGQGLVMLPVSEIL---PKAAYYLIQRRDS-RQTPLTASLITQF 293 (302)
T ss_pred HHHHHHHCCEEEE---ECHHHHHHHHHCCCEEEEECCCCC---CCEEEEEEEECCC-CCCHHHHHHHHHH
T ss_conf 9999997896796---319999878748999999799988---6008999998909-8899999999999