HHsearch alignment for GI: 254780342 and conserved domain: PRK09861
>PRK09861 cytoplasmic membrane lipoprotein-28; Provisional.
Probab=98.66 E-value=2e-06 Score=61.62 Aligned_cols=225 Identities=12% Similarity=0.083 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC-CHHHHHHHHHCCCCEEEEEEEC
Q ss_conf 999999999863035834588379942588699999999999996106984899856-4057888851498139998404
Q gi|254780342|r 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL-AVPVTFRSLKNKGIDIFMGYWY 84 (309)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~-~~~~~~~al~~G~iD~~~e~w~ 84 (309)
T Consensus 12 a~ll~~~~~l~~C~~~~~~~k~ikVG~~~~p~~~i~e~~~~~~~ek-~G~~leiv~FsDy~~PN~AL~~G~iDaN~fQ-- 88 (272)
T PRK09861 12 AALLLAGILLAGCDQSSSDAKHIKVGVINGAEQDVAEVAKKVAKEK-YGLDVELVGFSGSLLPNDATNHGELDANVFQ-- 88 (272)
T ss_pred HHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH-CCCEEEEEEECCCCCHHHHHHCCCCCCHHHH--
T ss_conf 9999999998745897678973899967898699999999888761-7976899994686226289767983602455--
Q ss_pred CCCHHHHHHHHHCCC--EEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHH---------HHHHHC-------CCCCC
Q ss_conf 641356666553047--023013566853567863446412345535655556---------654420-------13578
Q gi|254780342|r 85 PSLEKFIAPYLEEGS--IKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK---------KELGAK-------IYGIE 146 (309)
Q Consensus 85 p~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~---------~~~~~~-------~~g~~ 146 (309)
T Consensus 89 --H~pyL~~~n~~~g~~L~~v~~~~~~-P~glYS------~K~ksl~dlp~Ga~IaIPnDpsN~~RAL~lL~~aGLI~Lk 159 (272)
T PRK09861 89 --HRPFLEQDNQAHGYKLVAVGNTFVF-PMAGYS------KKIKTVAQIKEGATVAIPNDPTNLGRALLLLQKEKLITLK 159 (272)
T ss_pred --HHHHHHHHHHHCCCCEEEEEEEEEE-EEEECC------CCCCCHHHCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEC
T ss_conf --7999999999869957997316783-014034------4659875847999898047812699999999988978977
Q ss_pred CCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHCC----CCEEECCCCCCCCCC
Q ss_conf 5432005558766403545221001036652018999999965993699941242232015----851400786546778
Q gi|254780342|r 147 PGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDL----NIHYLPGGEEISGFG 222 (309)
Q Consensus 147 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~~~~~----dl~~Ledp~~~~~~p 222 (309)
T Consensus 160 ~~~~~~~t~~D-I~~NPk~lk---~~e~~----aaql~rsl~Dp~vD~avin~n~a~~agl~p~~dal~~E~~~-----~ 226 (272)
T PRK09861 160 EGKGLLPTALD-ITDNPRHLQ---IMELE----GAQLPRVLDDPKVDVAIISTTYIQQTGLSPVHDSVFIEDKN-----S 226 (272)
T ss_pred CCCCCCCCHHH-HHCCCCCCE---EEECC----HHHHHHHHCCCCCCEEEECHHHHHHCCCCCCCCCEEECCCC-----C
T ss_conf 99997777445-760887767---99826----77746750577616899760579887779440020366899-----9
Q ss_pred HHHHHHHHCHHHHHHCHHHHHHHHHCCCCHHHHHHH
Q ss_conf 658354427777874889999987408998999999
Q gi|254780342|r 223 EASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEM 258 (309)
Q Consensus 223 ~~~~~~vv~~~~~~~~P~~~~~L~~~~ls~~~~~~l 258 (309)
T Consensus 227 py~niiavr~~~-~d~~~ik~lv~a~~--S~evk~~ 259 (272)
T PRK09861 227 PYVNILVAREDN-KNAENVKEFLQSYQ--SPEVAKA 259 (272)
T ss_pred CEEEEEEECCCC-CCCHHHHHHHHHHC--CHHHHHH
T ss_conf 837999982767-69989999999977--9999999