HHsearch alignment for GI: 254780342 and conserved domain: PRK09986
>PRK09986 DNA-binding transcriptional activator XapR; Provisional.
Probab=94.24 E-value=0.46 Score=26.69 Aligned_cols=197 Identities=10% Similarity=0.081 Sum_probs=107.5
Q ss_pred CCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEE
Q ss_conf 34588379942588699999999999996106984899856405788885149813999840464135666655304702
Q gi|254780342|r 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIK 101 (309)
Q Consensus 22 ~~~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~~ 101 (309)
T Consensus 77 ~~~~g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~v~i~~~~~~~~~~~l~~~~~D~a~~~~-~~~~---~----~-~~~ 147 (278)
T PRK09986 77 RGEAGRIELGVVGTALWGRMRPAMRHFLKENPNVEVLFREKSPSMQMALLERRELDAGIWRM-ALEP---N----P-GFT 147 (278)
T ss_pred CCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHCCCCCEEEECC-CCCC---C----C-CCE
T ss_conf 57777336874216888764289999998789839999978869999999779975899637-7778---8----7-742
Q ss_pred EECCCCCCCEEEEEEEHHHH--HCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCH
Q ss_conf 30135668535678634464--1234553565555665442013578543200555876640354522100103665201
Q gi|254780342|r 102 LVAENLQGAKYMLAVNDVGF--ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179 (309)
Q Consensus 102 ~~~~~~~~~~~~~~v~~~~~--~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~ 179 (309)
T Consensus 148 ~~--~l~~~~~~~~~~~~hpla~~~~i~~~~l~~------~~~i~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~---~ 214 (278)
T PRK09986 148 SL--RLHESAFAVAVPEEHLLASKSSVPLKALRN------EYFVTLPSVHSDWGFLQRVCQQAGFSPQI--IREVN---E 214 (278)
T ss_pred EE--EEEECCCEEEECCCCCCCCCCCCCHHHHCC------CCEEEECCCCCHHHHHHHHHHHCCCCCCE--EEEEC---C
T ss_conf 68--877416379965987333699999999859------99798679986699999999977998517--99999---8
Q ss_pred HHHHHHHHHCCCCEEEEEECCCHHHHC--CCCEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHHHHHHCC
Q ss_conf 899999996599369994124223201--5851400786546778658354427777874889999987408
Q gi|254780342|r 180 FSQIRRDQRNNIPAVFLSWEPHPINSD--LNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK 249 (309)
Q Consensus 180 ~a~l~~A~~~~~~~v~~~wsp~~~~~~--~dl~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L~~~~ 249 (309)
T Consensus 215 ~~~~~~~V~~G~Giai---lp~~~~~~~~~~v~~~Pl~~~----~~~~~~lv~~~~--~~~p~~~~fi~~l~ 277 (278)
T PRK09986 215 PQTVLAMVSMGIGITL---VADSYAQMPWPGVVFRPLKER----IPADLYIVYHQQ--QATPALEKLLAALT 277 (278)
T ss_pred HHHHHHHHHHCCEEEE---EHHHHHCCCCCCEEEEECCCC----CCEEEEEEECCC--CCCHHHHHHHHHHC
T ss_conf 9999999997998998---417774237899999988999----803899998499--99999999999865