HHsearch alignment for GI: 254780342 and conserved domain: PRK11205
>PRK11205 tbpA thiamine transporter substrate binding subunit; Provisional.
Probab=96.42 E-value=0.084 Score=31.50 Aligned_cols=172 Identities=12% Similarity=0.064 Sum_probs=79.3
Q ss_pred CCCCCCEEEECCC-CCHHHHHHHHHHHHHHHCCCCEEEEEEC-CHHHHHHHHH-CC---CCEEEEEEECCCCHHHHHHHH
Q ss_conf 3458837994258-8699999999999996106984899856-4057888851-49---813999840464135666655
Q gi|254780342|r 22 ADSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNIKLL-AVPVTFRSLK-NK---GIDIFMGYWYPSLEKFIAPYL 95 (309)
Q Consensus 22 ~~~~~~I~ig~~~-wte~~v~a~i~~~iLE~~lGy~Ve~~~~-~~~~~~~al~-~G---~iD~~~e~w~p~~~~~~~~~~ 95 (309)
T Consensus 15 ~~~~~~l~vyt~dsf~~d~g~~~~l~~~Fek~tGikV~~v~~~dg~~ll~Rl~~Eg~np~ADVv~gvD~~----~l~~A~ 90 (326)
T PRK11205 15 AFAKPVLTVYTYDSFAADWGPGPAVKKAFEAECGCELKFVALEDGVSLLNRLRLEGKNSKADVVLGLDNN----LLAAAK 90 (326)
T ss_pred CCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHCCCCCCCCEEEECCHH----HHHHHH
T ss_conf 0029879999665444466864799999989879689999679679999999973899976589981767----899999
Q ss_pred HCCCEEEE---------C--------CCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC--HHHH
Q ss_conf 30470230---------1--------356685356786344641234553565555665442013578543200--5558
Q gi|254780342|r 96 EEGSIKLV---------A--------ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGN--QRIL 156 (309)
Q Consensus 96 ~~~~~~~~---------~--------~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~--~~~~ 156 (309)
T Consensus 91 ~~gl~~p~~s~~~~~~ip~~~~d~~~vp~d~g~~a~vYn~~~~~~~P~S~~DL~~p~--~kgki~i~dP~tSs~g~a~l~ 168 (326)
T PRK11205 91 KTGLFAPSGVDTSAVTVPGGWNDDTFVPYDYGYFAFVYDKEKLKNPPKSLKELVESD--QNWKVIYQDPRTSTPGLGLLL 168 (326)
T ss_pred HCCCCCCCCCCHHHCCCCCCCCCCCEECCCCCEEEEEEEHHHCCCCCCCHHHHHCCH--HCCCEEECCCCCCCCHHHHHH
T ss_conf 869965256861102486002698521134765899984222378876989872733--038866338887852799999
Q ss_pred HHHHHCC---------CCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCHHH
Q ss_conf 7664035---------45221001036652018999999965993699941242232
Q gi|254780342|r 157 DMINNNK---------FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPIN 204 (309)
Q Consensus 157 ~~~~~~~---------l~~~~~~~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~~ 204 (309)
T Consensus 169 ~~i~~~Ge~~~e~W~~L~~N~~~~~~g-----ws~a~~~~~~Ge~~ivlsy~~spa~ 220 (326)
T PRK11205 169 WMKKVYGDDAPQAWQKLAKKTVTVTKG-----WSEAYGLFLKGEADLVLSYTTSPAY 220 (326)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCCCCCC-----CHHHHHHHHCCCCCEEEEEECCHHH
T ss_conf 999971632899999998638444788-----3388887644767579985147787