HHsearch alignment for GI: 254780342 and conserved domain: PRK11242
>PRK11242 DNA-binding transcriptional regulator CynR; Provisional.
Probab=94.41 E-value=0.42 Score=26.93 Aligned_cols=193 Identities=11% Similarity=0.069 Sum_probs=108.5
Q ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEEEE
Q ss_conf 58837994258869999999999999610698489985640578888514981399984046413566665530470230
Q gi|254780342|r 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLV 103 (309)
Q Consensus 24 ~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~~~~ 103 (309)
T Consensus 89 ~~G~l~ig~~~~~~~~~l~~~l~~f~~~~P~i~i~l~~~~~~~~~~~l~~~~~D~~i~~~~~~~~~----------l~-- 156 (292)
T PRK11242 89 SRGSLRLAMTPTFTAYLIGPLIDAFHARYPGITLTIREMPQERIEALLADDELDVGIAFAPVHSPE----------IE-- 156 (292)
T ss_pred CCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCC----------CE--
T ss_conf 776586302457788873899888886488973489976889999998679855799836888877----------25--
Q ss_pred CCCCCCCEEEEEEEHHHHH---CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHH
Q ss_conf 1356685356786344641---2345535655556654420135785432005558766403545221001036652018
Q gi|254780342|r 104 AENLQGAKYMLAVNDVGFA---LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180 (309)
Q Consensus 104 ~~~~~~~~~~~~v~~~~~~---~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~ 180 (309)
T Consensus 157 ~~~l~~~~~~~v~~~~h~la~~~~~is~~~L~~~------~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~----~ 225 (292)
T PRK11242 157 AQPLFTETLALVVGRTHPLAARRKPLTLDELADE------PLVLLSAEFATREQIDRYFRRHGITPR-VAIEANS----I 225 (292)
T ss_pred EEEECCCEEEEEEECCCHHHHCCCCCCHHHHCCC------CEEEECCCCCHHHHHHHHHHHCCCCCC-EEEEECC----H
T ss_conf 6542045079999089804227999999998189------989967998579999999997699985-3675388----9
Q ss_pred HHHHHHHHCCCCEEEEEECCCHHHHCC-CCEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHHHHH
Q ss_conf 999999965993699941242232015-851400786546778658354427777874889999987
Q gi|254780342|r 181 SQIRRDQRNNIPAVFLSWEPHPINSDL-NIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLK 246 (309)
Q Consensus 181 a~l~~A~~~~~~~v~~~wsp~~~~~~~-dl~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L~ 246 (309)
T Consensus 226 ~~~~~~V~~g~Gi~i---lP~~~~~~~~~l~~i~l~~~~---~~r~i~lv~~k~-~~~s~~~~~Fid 285 (292)
T PRK11242 226 SAVLEIVRRGRLATL---LPAAIAREHDDLCAVALDPPL---PQRTAALLRRKG-AYRSAAARAFIE 285 (292)
T ss_pred HHHHHHHHHCCEEEE---EHHHHHHHCCCEEEEECCCCC---CEEEEEEEEECC-CCCCHHHHHHHH
T ss_conf 999999997996997---028986008998999898998---703999999893-988999999999