HHsearch alignment for GI: 254780342 and conserved domain: PRK12682
>PRK12682 transcriptional regulator CysB-like protein; Reviewed.
Probab=92.01 E-value=1 Score=24.52 Aligned_cols=204 Identities=11% Similarity=0.054 Sum_probs=114.1
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEEE
Q ss_conf 45883799425886999999999999961069848998564057888851498139998404641356666553047023
Q gi|254780342|r 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKL 102 (309)
Q Consensus 23 ~~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~~~ 102 (309)
T Consensus 90 ~~~G~lrIg~~~~~~~~~lp~~l~~f~~~~P~v~l~l~~~~~~~~~~~l~~g~~Dl~i~~~-~~--------~~~~~l~~ 160 (309)
T PRK12682 90 QDSGTLTIATTHTQARYVLPRVVAKFRKRYPKVNLSLHQGSPDEIAQMVISGEADIGIATE-SL--------DDDPDLVT 160 (309)
T ss_pred CCCCCCCCCCCHHHHHHCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCHHHHHC-CC--------CCCCCEEE
T ss_conf 6777412124313332038625399998789837999837829999999769976456507-77--------78988089
Q ss_pred ECCCCCCCEEEEEEEHHHH--HCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHH
Q ss_conf 0135668535678634464--12345535655556654420135785432005558766403545221001036652018
Q gi|254780342|r 103 VAENLQGAKYMLAVNDVGF--ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180 (309)
Q Consensus 103 ~~~~~~~~~~~~~v~~~~~--~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~ 180 (309)
T Consensus 161 ~-~l~~-~~~~~v~~~~h~la~~~~i~~~dL~~~------p~I~~~~~~~~r~~~~~~~~~~g~~p~-~~~~~~~----~ 227 (309)
T PRK12682 161 L-PCYD-WTHAVIVPSDHPLAQKERITLEDLAEY------PLITYHPGFTGRSAIDKAFAAAGLQPD-IVLEAID----S 227 (309)
T ss_pred E-EEEC-CCEEEEECCCCHHHCCCCCCHHHHCCC------CEEEECCCCCHHHHHHHHHHHCCCCCC-EEEEECC----H
T ss_conf 9-9331-523676169972114999999998289------979727998679999999997799962-6999998----9
Q ss_pred HHHHHHHHCCCCEEEEEECCCHHHH---CCCCEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHHHHHHC--CCCHHHH
Q ss_conf 9999999659936999412422320---1585140078654677865835442777787488999998740--8998999
Q gi|254780342|r 181 SQIRRDQRNNIPAVFLSWEPHPINS---DLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALE 255 (309)
Q Consensus 181 a~l~~A~~~~~~~v~~~wsp~~~~~---~~dl~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L~~~--~ls~~~~ 255 (309)
T Consensus 228 ~~~~~~v~~G~Gi~~---lp~~~~~~~~~~~Lv~v~~~~-~~--~~~~~~l~~rk~~-~l~~~~~~FId~l~e~l~~~~~ 300 (309)
T PRK12682 228 DVIKTYVRLGLGVGI---IAEMAYRPDRDGDLVALPAGH-LF--GPNTAWVAVKRGA-YLRNYVYDFIELLAPHLSRELI 300 (309)
T ss_pred HHHHHHHHHCCEEEH---HHHHHHHHHHCCCEEEEECCC-CC--CCCEEEEEEECCC-CCCHHHHHHHHHHHHHCCHHHH
T ss_conf 999999995994242---289983376479989997988-77--7617999996966-1189999999999987298999