HHsearch alignment for GI: 254780342 and conserved domain: TIGR03227
>TIGR03227 PhnS 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate binding protein. This ABC transporter periplasmic substrate binding protein component is found in a region of the salmonella typhimurium LT2 genome responsible for the catabolism of 2-aminoethylphosphonate via the phnWX pathway (GenProp0238). The protein contains a match to pfam01547 for the "Bacterial extracellular solute-binding protein" domain.
Probab=98.21 E-value=0.00054 Score=45.78 Aligned_cols=284 Identities=14% Similarity=0.074 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCEEE-ECCCCC-HHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH----CCC
Q ss_conf 57999999999998630358345883799-425886-999999999999961069848998564057888851----498
Q gi|254780342|r 2 YKILAVCLFLTTFSISYARDADSCTPVRF-ADTGWT-DIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLK----NKG 75 (309)
Q Consensus 2 kk~~~~~~~~~~~~~~~~~~~~~~~~I~i-g~~~wt-e~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~----~G~ 75 (309)
T Consensus 13 ~~~-~~~~~~~~~~~~~~~~a~a~~~~~vy~~~~~~~~~~~~~~~~~~aFek~tGikV~~v~~~sge~laRl~aEk~nPq 91 (367)
T TIGR03227 13 RRF-ALAAGAAALLQGAAAPAQAAAVVLVYSADGLEDGDNSLYQDQFDAFEKAEGIKVNIVEAGGGEVVERAAKEKGNPK 91 (367)
T ss_pred HHH-HHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHCCCCCC
T ss_conf 999-9999999998642355545865999964664344434688876888886698389998977999999995227997
Q ss_pred CEEEEEEECCCCHHHHHHHHHCCCEEEE------------------CCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHH
Q ss_conf 1399984046413566665530470230------------------1356685356786344641234553565555665
Q gi|254780342|r 76 IDIFMGYWYPSLEKFIAPYLEEGSIKLV------------------AENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKE 137 (309)
Q Consensus 76 iD~~~e~w~p~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~ 137 (309)
T Consensus 92 aDVv~~~--d~---~~~~A~~~GLl~py~~~~~~~ip~~~k~~dg~~~~~~~~~~~~~yN~~~~k~~PkSW~DL~dP--~ 164 (367)
T TIGR03227 92 ADVIVTA--PP---FIQQAAAEGLLANFNSDAAKAIPAIAKAADGLWAPFVKNYFSFAINPKLLKSAPASFADLLDA--D 164 (367)
T ss_pred CEEEEEC--CH---HHHHHHHCCCCCCCCCCCHHHCCHHHHCCCCCEEEEECCEEEEEEEHHHHCCCCCCHHHHHCC--C
T ss_conf 2099978--57---999999788956278966455777663779838988555799999857705799889987285--3
Q ss_pred HHHCCCCCCCCCCCCH--HHHHHHHHCCCCCCCE--------E--EECCCCCCHHHHHHHHHHCCCCEEEEEECCCHHH-
Q ss_conf 4420135785432005--5587664035452210--------0--1036652018999999965993699941242232-
Q gi|254780342|r 138 LGAKIYGIEPGNEGNQ--RILDMINNNKFSLKGF--------R--LIEASELASFSQIRRDQRNNIPAVFLSWEPHPIN- 204 (309)
Q Consensus 138 ~~~~~~g~~~~~~~~~--~~~~~~~~~~l~~~~~--------~--~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~~- 204 (309)
T Consensus 165 ykgkI~~~dP~tS~~g~~~l~~~~~~~G~eD~a~~~~~~L~~N~~~~~~s----~~~~~~~~~~GE~~va~g~~~~~~~~ 240 (367)
T TIGR03227 165 FKGKLAYSNPAQAADGMAVIILAFALFGSEDAAFAYLAKLEANNKFHSAG----TGKLNALLNKGEIAVANGDLQMDLAD 240 (367)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEECCC----CHHHHHHHHCCCEEEEEEECCHHHHH
T ss_conf 37828952877661799999999997098538899999887448672478----17999998578678995202043677
Q ss_pred H---CCCCEEECCCCCCCCCCHHHHHHHHCHHHH--HHCHHHHHHHHHCCCCHHHHHHHHHHH-----HHCCCCHHHHH-
Q ss_conf 0---158514007865467786583544277778--748899999874089989999999999-----84599989999-
Q gi|254780342|r 205 S---DLNIHYLPGGEEISGFGEASVYTVVRSDYL--DKCPNISRLLKNIKFSVALENEMMKLI-----LNNKQDRQFVG- 273 (309)
Q Consensus 205 ~---~~dl~~Ledp~~~~~~p~~~~~~vv~~~~~--~~~P~~~~~L~~~~ls~~~~~~l~~~v-----~~~g~~~~~vA- 273 (309)
T Consensus 241 ~~~~g~~v~~v-~P~~~~g~~~g~~~i~~~i~ivKga~n~e~AkkfidflLS~e~Q~~~a~~~~~~Pv~~~v~l~~~~~~ 319 (367)
T TIGR03227 241 AEHGGLNIKIF-FPAADAGEPPSAFAIPYAIGLVKGAPNQDAGKKLIDFLLSADAQAKVPDLSFGIPGRSDVPLSDEHGE 319 (367)
T ss_pred HHHCCCCCEEE-EECCCCCCCCCEEEEEEHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCHHHHH
T ss_conf 76279970289-54677788873487522034644999989999999997299999999986016767788769835554
Q ss_pred ---------H------HHHHHHHHHH-HHHHCCCCCCCCHH
Q ss_conf ---------9------9999859999-98754754567713
Q gi|254780342|r 274 ---------R------TMLRTHPDLL-KNWLIGVTTFDGQD 298 (309)
Q Consensus 274 ---------~------~wL~~n~~~~-~~Wl~~~~~~~~~~ 298 (309)
T Consensus 320 ~~~~~~~~~kl~~~Dw~~i~~~r~~wi~rW~~eV~~~~~~~ 360 (367)
T TIGR03227 320 AAKAAIAGVKLIPPDWDAVAAKKPADIERWHKEVIGDSGKQ 360 (367)
T ss_pred HCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCE
T ss_conf 22133233511158999999878999999999857666864