HHsearch alignment for GI: 254780342 and conserved domain: TIGR03427
>TIGR03427 ABC_peri_uca ABC transporter periplasmic binding protein, urea carboxylase region. Members of this family are ABC transporter periplasmic binding proteins associated with the urea carboxylase/allophanate hydrolase pathway, an alternative to urease for urea degradation. The protein is restricted to bacteria with the pathway, with its gene close to the urea carboxylase and allophanate hydrolase genes. The substrate for this transporter therefore is likely to be urea or a compound from which urea is easily derived.
Probab=98.83 E-value=4.6e-07 Score=65.75 Aligned_cols=201 Identities=12% Similarity=0.095 Sum_probs=136.3
Q ss_pred CCCEEEECCCCCHHHHHHHH-----HHHHHHHCCCCEEEEEEC-CHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCC
Q ss_conf 88379942588699999999-----999996106984899856-405788885149813999840464135666655304
Q gi|254780342|r 25 CTPVRFADTGWTDIAATTAM-----TSVILEEILGYKTNIKLL-AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEG 98 (309)
Q Consensus 25 ~~~I~ig~~~wte~~v~a~i-----~~~iLE~~lGy~Ve~~~~-~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~ 98 (309)
T Consensus 1 k~~~kig~S~w~Gw~Pw~~A~e~GifkKw~~k-~Gi~Vel~~f~dy~~si~a~~AG~~Dg~~~Tn~Dal~i~aa-~Gvd~ 78 (328)
T TIGR03427 1 KDKFKVCWSIYAGWMPWGYAAQQGIVDKWADK-YGITIEVVQINDYVESINQYTAGKFDGCTMTNMDALTIPAA-GGVDT 78 (328)
T ss_pred CCCEEEEEECCCCHHHHHHHHHCCCHHHHHHH-CCCEEEEEECCCHHHHHHHHHCCCCCEEEEECCHHHHHHHC-CCCCE
T ss_conf 99339997268538889999974926555887-59737999828848889999758977477626156651311-79972
Q ss_pred CEEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCC
Q ss_conf 70230135668535678634464123455356555566544201357854320055587664035452210010366520
Q gi|254780342|r 99 SIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178 (309)
Q Consensus 99 ~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~ 178 (309)
T Consensus 79 ~~vlv~D~SnG-~D~Ivak------~~~slaDL-------KGKkVav~~~svshyLL~rALe~aGLs~~DV~vVn~~~~- 143 (328)
T TIGR03427 79 TALIVGDFSNG-NDGIVLK------GGKSLADL-------KGQKVNLVELSVSHYLLARALESVGLSEKDVKVVNTSDA- 143 (328)
T ss_pred EEEEEECCCCC-CCEEEEC------CCCCHHHH-------CCCEEECCCCCCHHHHHHHHHHHCCCCHHHEEEEECCCH-
T ss_conf 89998525788-7479978------99887884-------898883247870799999999986998899078847954-
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCHH-HH-CCCCEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHHHHHH
Q ss_conf 1899999996599369994124223-20-158514007865467786583544277778748899999874
Q gi|254780342|r 179 SFSQIRRDQRNNIPAVFLSWEPHPI-NS-DLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKN 247 (309)
Q Consensus 179 ~~a~l~~A~~~~~~~v~~~wsp~~~-~~-~~dl~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L~~ 247 (309)
T Consensus 144 ---d~~aAf~sg~VdA~vTWeP~ls~i~~~~ga~~iF~Ss~iPG-eI~D-~lvV~~~~L~~nP~~~kAlv~ 209 (328)
T TIGR03427 144 ---DIVAAFITKDVTAVVTWNPQLSEIKAQPGANEVFDSSQIPG-EILD-LMVVNTQTLKANPNLGKALTG 209 (328)
T ss_pred ---HHHHHHHCCCCCEEEEECHHHHHHHHCCCCCEEEECCCCCC-CEEE-EEEECHHHHHHCHHHHHHHHH
T ss_conf ---69999747998789997856899972899826442577888-4037-999858988879999999999