HHsearch results for GI: 254780342 and protein with PDBid: 1al3_A
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=94.16 E-value=0.29 Score=26.59 Aligned_cols=205 Identities=10% Similarity=0.027 Sum_probs=113.8
Q ss_pred CCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEE
Q ss_conf 34588379942588699999999999996106984899856405788885149813999840464135666655304702
Q gi|254780342|r 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIK 101 (309)
Q Consensus 22 ~~~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~~ 101 (309)
.....+|+||.........+..+++.+.++.-+..+++..+++..+.+.|.+|++|+......... .....
T Consensus 89 ~~~~g~l~i~~~~~~~~~~l~~~l~~~~~~~P~i~i~l~~~~~~~~~~~l~~~~~D~~i~~~~~~~---------~~~~~ 159 (324)
T 1al3_A 89 WPDKGSLYVATTHTQARYALPGVIKGFIERYPRVSLHMHQGSPTQIAEAVSKGNADFAIATEALHL---------YDDLV 159 (324)
T ss_dssp CCCEEEEEEEECHHHHHHTSHHHHHHHHHHCTEEEEEEEECCHHHHHHHHHTTCCSEEEESSCCCT---------TSCEE
T ss_pred CCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCEEEEEECCCCCC---------CCCEE
T ss_conf 456675067533687887899999999975898289999798799986674798258863067677---------66505
Q ss_pred EECCCCCCCEEEEEEEHHHHH--CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCH
Q ss_conf 301356685356786344641--234553565555665442013578543200555876640354522100103665201
Q gi|254780342|r 102 LVAENLQGAKYMLAVNDVGFA--LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179 (309)
Q Consensus 102 ~~~~~~~~~~~~~~v~~~~~~--~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~ 179 (309)
. .........+++++.-+. ..-.++++|.+. ..+..+++..............+.... ..+...+
T Consensus 160 ~--~~l~~~~~~~~~~~~~~l~~~~~i~~~dL~~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---- 226 (324)
T 1al3_A 160 M--LPCYHWNRSIVVTPEHPLATKGSVSIEELAQY------PLVTYTFGFTGRSELDTAFNRAGLTPR-IVFTATD---- 226 (324)
T ss_dssp E--EEEEEECEEEEECTTSTTTTTSCCCHHHHHTS------EEEEECTTSTTHHHHHHHHHHHTCCCE-EEEEESS----
T ss_pred E--EEEEEEEEEEEECCCCHHCCCCCCCHHHHHHC------CCEECCCCCCHHHHHHHHHHHCCCCCC-EEEEECC----
T ss_conf 8--98653005799746522103999999999628------772048998489999999997699875-6999999----
Q ss_pred HHHHHHHHHCCCCEEEEEECCCHHH---HCCCCEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHHHHHHC--CCCHHH
Q ss_conf 8999999965993699941242232---01585140078654677865835442777787488999998740--899899
Q gi|254780342|r 180 FSQIRRDQRNNIPAVFLSWEPHPIN---SDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVAL 254 (309)
Q Consensus 180 ~a~l~~A~~~~~~~v~~~wsp~~~~---~~~dl~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L~~~--~ls~~~ 254 (309)
...+.+++..|..+.+. |.... ...+++.++.+... +...+..+.|++-. ..|.+.+|++.+ .++-+.
T Consensus 227 ~~~~~~~v~~g~gi~~l---p~~~~~~~~~~~lv~~~~~~~~---~~~~~~l~~r~~~~-~s~~~~~fi~~~~~~l~r~~ 299 (324)
T 1al3_A 227 ADVIKTYVRLGLGVGVI---ASMAVDPVSDPDLVKLDANGIF---SHSTTKIGFRRSTF-LRSYMYDFIQRFAPHLTRDV 299 (324)
T ss_dssp HHHHHHHHHHTSCEEEE---EGGGCCTTTCTTSEEEECBTTB---CCEEEEEEEETTCC-CCHHHHHHHHHHCTTCCHHH
T ss_pred HHHHHHHHHHCCEEEEC---HHHHHHHHHCCCEEEEECCCCC---CCCEEEEEEECCCC-CCHHHHHHHHHHHHHHCHHH
T ss_conf 99999999939979972---5989738748998999587888---65579999969685-69999999999998747998
Q ss_pred H
Q ss_conf 9
Q gi|254780342|r 255 E 255 (309)
Q Consensus 255 ~ 255 (309)
+
T Consensus 300 ~ 300 (324)
T 1al3_A 300 V 300 (324)
T ss_dssp H
T ss_pred H
T ss_conf 9