HHsearch results for GI: 254780342 and protein with PDBid: 1us5_A

>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=98.18  E-value=5.4e-05  Score=50.88  Aligned_cols=194  Identities=9%  Similarity=0.057  Sum_probs=113.2

Q ss_pred             CHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCC-CHHHHHHHHHHHHHHHC-CCCEEEEEE-CCHHHHHHHHHCCCCE
Q ss_conf             95799999999999863035834588379942588-69999999999999610-698489985-6405788885149813
Q gi|254780342|r    1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGW-TDIAATTAMTSVILEEI-LGYKTNIKL-LAVPVTFRSLKNKGID   77 (309)
Q Consensus         1 mkk~~~~~~~~~~~~~~~~~~~~~~~~I~ig~~~w-te~~v~a~i~~~iLE~~-lGy~Ve~~~-~~~~~~~~al~~G~iD   77 (309)
                      |||.++++++++.+    + .  ..+.++|++-.= ...+.++.-+++++.++ -|++++.++ +++......|.+|++|
T Consensus         1 m~~~ila~l~~a~~----a-~--A~~~l~i~tg~~gg~~~~~g~~ia~~~~~~~~gi~~~~~~t~Gs~~N~~~l~~g~~d   73 (314)
T 1us5_A            1 MRKPILAALTLAGL----G-L--AQEFITIGSGSTTGVYFPVATGIAKLVNDANVGIRANARSTGGSVANINAINAGEFE   73 (314)
T ss_dssp             -----------------------CCEEEEEECCCTTSSHHHHHHHHHHHHHHHTSSEEEEEECCSCHHHHHHHHHTTSCS
T ss_pred             CCHHHHHHHHHHCH----H-H--HCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHCCCCC
T ss_conf             93899999997243----4-2--331489997999971499999999999735898489998078889999999769971


Q ss_pred             EEEEEECCCCHHHHHH--HH----HCCCEEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             9998404641356666--55----30470230135668535678634464123455356555566544201357854320
Q gi|254780342|r   78 IFMGYWYPSLEKFIAP--YL----EEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEG  151 (309)
Q Consensus        78 ~~~e~w~p~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~  151 (309)
                      +....-..........  ..    .-..+..+...+. ....+.+++   ..+|++++||..      .++...+++.+.
T Consensus        74 ~a~~~~~~~~~~~~~~g~~~~~~~~~~~lr~v~~~~~-~~~~~~v~~---ds~I~s~~DL~G------krv~~g~~gs~~  143 (314)
T 1us5_A           74 MALAQNDIAYYAYQGCCIPAFEGKPVKTIRALAALYP-EVVHVVARK---DAGIRTVADLKG------KRVVVGDVGSGT  143 (314)
T ss_dssp             EEEEEHHHHHHHHHTCSSTTTTTCCCTTEEEEEEEEE-EEEEEEEET---TSSCSSGGGGTT------SEEECCCTTCHH
T ss_pred             EEEECHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECH-HHHEEEECC---CCCCCCHHHHCC------CEEECCCCCCCH
T ss_conf             9997508999998466875334575404027887051-133133037---777677888088------775136888513


Q ss_pred             CHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHCCCCEEEEEECCC--HHH----HCCCCEEECCC
Q ss_conf             055587664035452210-01036652018999999965993699941242--232----01585140078
Q gi|254780342|r  152 NQRILDMINNNKFSLKGF-RLIEASELASFSQIRRDQRNNIPAVFLSWEPH--PIN----SDLNIHYLPGG  215 (309)
Q Consensus       152 ~~~~~~~~~~~~l~~~~~-~~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~--~~~----~~~dl~~Ledp  215 (309)
                      .......++.+++..+.. .+...+    ..+...++.+|+.++++...++  ..+    ...++++|.-+
T Consensus       144 ~~~~~~~l~~~g~~~~d~~~v~~~~----~~~~~~al~~g~iDa~~~~~~~p~~~i~~~~~~~~~~ll~~~  210 (314)
T 1us5_A          144 EQNARQILEAYGLTFDDLGQAIRVS----ASQGIQLMQDKRADALFYTVGLGASAIQQLALTTPIALVAVD  210 (314)
T ss_dssp             HHHHHHHHHHTTCCGGGSSEEECCC----HHHHHHHHHTTSCSEEEEEECTTCHHHHHHHHHSCEEECCCC
T ss_pred             HHHHHHHHHHHCCCCCCCCEEEECC----HHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCC
T ss_conf             6689999998099834463234268----889999974797527998258984789999754862334764