HHsearch results for GI: 254780342 and protein with PDBid: 1us5_A
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=98.18 E-value=5.4e-05 Score=50.88 Aligned_cols=194 Identities=9% Similarity=0.057 Sum_probs=113.2
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCC-CHHHHHHHHHHHHHHHC-CCCEEEEEE-CCHHHHHHHHHCCCCE
Q ss_conf 95799999999999863035834588379942588-69999999999999610-698489985-6405788885149813
Q gi|254780342|r 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGW-TDIAATTAMTSVILEEI-LGYKTNIKL-LAVPVTFRSLKNKGID 77 (309)
Q Consensus 1 mkk~~~~~~~~~~~~~~~~~~~~~~~~I~ig~~~w-te~~v~a~i~~~iLE~~-lGy~Ve~~~-~~~~~~~~al~~G~iD 77 (309)
|||.++++++++.+ + . ..+.++|++-.= ...+.++.-+++++.++ -|++++.++ +++......|.+|++|
T Consensus 1 m~~~ila~l~~a~~----a-~--A~~~l~i~tg~~gg~~~~~g~~ia~~~~~~~~gi~~~~~~t~Gs~~N~~~l~~g~~d 73 (314)
T 1us5_A 1 MRKPILAALTLAGL----G-L--AQEFITIGSGSTTGVYFPVATGIAKLVNDANVGIRANARSTGGSVANINAINAGEFE 73 (314)
T ss_dssp -----------------------CCEEEEEECCCTTSSHHHHHHHHHHHHHHHTSSEEEEEECCSCHHHHHHHHHTTSCS
T ss_pred CCHHHHHHHHHHCH----H-H--HCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHCCCCC
T ss_conf 93899999997243----4-2--331489997999971499999999999735898489998078889999999769971
Q ss_pred EEEEEECCCCHHHHHH--HH----HCCCEEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 9998404641356666--55----30470230135668535678634464123455356555566544201357854320
Q gi|254780342|r 78 IFMGYWYPSLEKFIAP--YL----EEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEG 151 (309)
Q Consensus 78 ~~~e~w~p~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~ 151 (309)
+....-.......... .. .-..+..+...+. ....+.+++ ..+|++++||.. .++...+++.+.
T Consensus 74 ~a~~~~~~~~~~~~~~g~~~~~~~~~~~lr~v~~~~~-~~~~~~v~~---ds~I~s~~DL~G------krv~~g~~gs~~ 143 (314)
T 1us5_A 74 MALAQNDIAYYAYQGCCIPAFEGKPVKTIRALAALYP-EVVHVVARK---DAGIRTVADLKG------KRVVVGDVGSGT 143 (314)
T ss_dssp EEEEEHHHHHHHHHTCSSTTTTTCCCTTEEEEEEEEE-EEEEEEEET---TSSCSSGGGGTT------SEEECCCTTCHH
T ss_pred EEEECHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECH-HHHEEEECC---CCCCCCHHHHCC------CEEECCCCCCCH
T ss_conf 9997508999998466875334575404027887051-133133037---777677888088------775136888513
Q ss_pred CHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHCCCCEEEEEECCC--HHH----HCCCCEEECCC
Q ss_conf 055587664035452210-01036652018999999965993699941242--232----01585140078
Q gi|254780342|r 152 NQRILDMINNNKFSLKGF-RLIEASELASFSQIRRDQRNNIPAVFLSWEPH--PIN----SDLNIHYLPGG 215 (309)
Q Consensus 152 ~~~~~~~~~~~~l~~~~~-~~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~--~~~----~~~dl~~Ledp 215 (309)
.......++.+++..+.. .+...+ ..+...++.+|+.++++...++ ..+ ...++++|.-+
T Consensus 144 ~~~~~~~l~~~g~~~~d~~~v~~~~----~~~~~~al~~g~iDa~~~~~~~p~~~i~~~~~~~~~~ll~~~ 210 (314)
T 1us5_A 144 EQNARQILEAYGLTFDDLGQAIRVS----ASQGIQLMQDKRADALFYTVGLGASAIQQLALTTPIALVAVD 210 (314)
T ss_dssp HHHHHHHHHHTTCCGGGSSEEECCC----HHHHHHHHHTTSCSEEEEEECTTCHHHHHHHHHSCEEECCCC
T ss_pred HHHHHHHHHHHCCCCCCCCEEEECC----HHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCC
T ss_conf 6689999998099834463234268----889999974797527998258984789999754862334764