HHsearch results for GI: 254780342 and protein with PDBid: 1xs5_A

>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=98.66  E-value=2.6e-07  Score=65.96  Aligned_cols=197  Identities=10%  Similarity=0.050  Sum_probs=109.9

Q ss_pred             CCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC-CHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEEEE
Q ss_conf             88379942588699999999999996106984899856-40578888514981399984046413566665530470230
Q gi|254780342|r   25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL-AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLV  103 (309)
Q Consensus        25 ~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~-~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~~~~  103 (309)
                      .+|||||...++...++. +.+..+|+. |++||++.. +.....+||.+|+||+..-...|........  ....++..
T Consensus         2 ~~ti~iG~~~~~~~~~l~-~~k~~~k~~-Gl~Ve~~~f~~g~~~~~Al~sG~iD~~~~g~~p~l~~~~~~--~~~~l~~v   77 (241)
T 1xs5_A            2 DETVGVGVLSEPHARLLE-IAKEEVKKQ-HIELRIVEFTNYVALNEAVMRGDILMNFFQHVPHMQQFNQE--HNGDLVSV   77 (241)
T ss_dssp             CEEEEEEECSTTHHHHHH-HHHHHHHTT-TEEEEEEECSCHHHHHHHHHHTSSSEEEEEEHHHHHHHHHH--HTCCEEEE
T ss_pred             CCEEEEEECCCCHHHHHH-HHHHHHHHC-CCEEEEEEECCCHHHHHHHHCCCCCEEEECCHHHHHHHHHH--CCCCEEEE
T ss_conf             932999960698599999-999999974-98899999388177899997699767985578899998854--69738999


Q ss_pred             CCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHC-CCCCCC--------------
Q ss_conf             13566853567863446412345535655556654420135785432005558766403-545221--------------
Q gi|254780342|r  104 AENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN-KFSLKG--------------  168 (309)
Q Consensus       104 ~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~l~~~~--------------  168 (309)
                      +..+... .+++..      .+.++.++.+      ++.++.+.+...+......+... .+++..              
T Consensus        78 ~~~~~~~-~~l~~~------~~~s~~d~~~------gk~ia~~~~~s~~~~~~~~l~~~~~~~l~~~~~~~~~~~Di~~~  144 (241)
T 1xs5_A           78 GNVHVEP-LALYSR------TYRHVSDFPA------GAVIAIPNDSSNEARALRLLEAAGFIRMRAGSGLFATVEDVQQN  144 (241)
T ss_dssp             EEEEECC-CEEECS------SCCSGGGCCT------TCEEEEECSHHHHHHHHHHHHHTTSCEECTTCCTTCCGGGEEEC
T ss_pred             EEECCCC-EEEEEC------CCCCHHHHCC------CCEEEECCCCCHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHHC
T ss_conf             8841465-488836------8677667348------87698258882799999999975881343688876776566534


Q ss_pred             ---EEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHCCCC--EEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHH
Q ss_conf             ---00103665201899999996599369994124223201585--1400786546778658354427777874889999
Q gi|254780342|r  169 ---FRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNI--HYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR  243 (309)
Q Consensus       169 ---~~~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~~~~~dl--~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~  243 (309)
                         ..+....      ....+...++++.+..|.|.........  ..|-+....   +++....++|+. .++.+.+.+
T Consensus       145 ~~~~~~~~~~------~a~~a~~~~~vda~~~~~p~~~~a~~~~~~~~l~~~~~~---~~~~~~lv~r~~-~~~~~~i~~  214 (241)
T 1xs5_A          145 VRNVVLQEVE------SALLPRVFDQVDGAVINGNYAIMAGLSARRDGLAVEPDA---SAYANVLVVKRG-NEADARVQA  214 (241)
T ss_dssp             TTCCEEEEEC------GGGHHHHGGGSSEEEECHHHHHHTTCCTTTTCSEECSCG---GGGCEEEEEETT-CTTCHHHHH
T ss_pred             CCCCCCCCCC------HHHHHHHCCCCCEEEECCCHHHHHCCCCCCCEEEECCCC---CCEEEEEEECCH-HHCCHHHHH
T ss_conf             3445425744------767777427775799646489985588766779963789---863799998340-109899999


Q ss_pred             HHHHC
Q ss_conf             98740
Q gi|254780342|r  244 LLKNI  248 (309)
Q Consensus       244 ~L~~~  248 (309)
                      +++.+
T Consensus       215 l~~a~  219 (241)
T 1xs5_A          215 VLRAL  219 (241)
T ss_dssp             HHHHH
T ss_pred             HHHHH
T ss_conf             99997