HHsearch results for GI: 254780342 and protein with PDBid: 2hxw_A
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A*
Probab=94.15 E-value=0.12 Score=29.11 Aligned_cols=208 Identities=13% Similarity=0.094 Sum_probs=92.8
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCC-EEEEC--
Q ss_conf 799425886999999999999961069848998564057888851498139998404641356666553047-02301--
Q gi|254780342|r 28 VRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS-IKLVA-- 104 (309)
Q Consensus 28 I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~-~~~~~-- 104 (309)
|+|-...-.. .++.++.+.. |++.|++|++..+++..+...+..|- |+.... .. ........+.. .....
T Consensus 3 i~v~~~~~~~-~~~~~l~~~F-ek~tGi~V~~~~~~s~~l~~~i~~~a-Dv~~~~---~~-~~~~~~~~~~~~~~~~~~~ 75 (237)
T 2hxw_A 3 VNLYGPGGPH-TALKDIANKY-SEKTGVKVNVNFGPQATWFEKAKKDA-DILFGA---SD-QSALAIASDFGKDFNVSKI 75 (237)
T ss_dssp EEEEECSSTH-HHHHHHHHHH-HHHHCCCEEEEESSHHHHHHHHHHHC-SEEEES---SH-HHHHHHHTTSGGGCCGGGC
T ss_pred EEEEECCCCH-HHHHHHHHHH-HHHHCCEEEEEECCCHHHHHHHHCCC-CEEEEC---CC-HHHHHHHHHHCCCCCCCCE
T ss_conf 9999478978-9999999999-88019759999778299999976599-999984---60-4789998861046777727
Q ss_pred CCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCC--------CCEEEECCCC
Q ss_conf 35668535678634464123455356555566544201357854320055587664035452--------2100103665
Q gi|254780342|r 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSL--------KGFRLIEASE 176 (309)
Q Consensus 105 ~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~s~ 176 (309)
.....+...+++++.. ...+++|.||.+..-..........+... ............... .......+..
T Consensus 76 ~~~~~~~~vl~~~~~~-~~~~~~~~dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (237)
T 2hxw_A 76 KPLYFREAIILTQKGN-PLKIKGLKDLANKKVRIVVPEGAGKSNTS-GTGVWEDMIGRTQDIKTIQNFRNNIVAFVPNSG 153 (237)
T ss_dssp EEEEEEEEEEEESTTC-TTCCCSHHHHHHSCCCEEECCCTTSSCCT-TTTHHHHHHHTTCCHHHHHHHHHTEEEECCCCT
T ss_pred EEEEEEEEEEEEECCC-CCCCCCHHHHHHCCCEEEEECCCCCCCHH-HHHHHHHHHHHHCCHHHHHHHHCCCEEECCCHH
T ss_conf 9999432999997999-76765235664203106651368873222-799999986222208899974357058658889
Q ss_pred CCHHHHHHHHHHCCCCEEEEEECCCHHHHCCCCEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHH-HHHHHHCCCCHHHH
Q ss_conf 20189999999659936999412422320158514007865467786583544277778748899-99987408998999
Q gi|254780342|r 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNI-SRLLKNIKFSVALE 255 (309)
Q Consensus 177 ~~~~a~l~~A~~~~~~~v~~~wsp~~~~~~~dl~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~-~~~L~~~~ls~~~~ 255 (309)
+...++.+|+.++...|..+..........+..+.... -.+.+. ++.. .+||+. .+|+ ++-+|.+-+
T Consensus 154 -----~~~~~v~~g~~d~~i~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~-i~~~---~~~~~~A~~Fi-~fl~S~e~q 221 (237)
T 2hxw_A 154 -----SARKLFAQDQADAWITWIDWSKSNPDIGTAVAIEKDLV--VYRTFN-VIAK---EGASKETQDFI-AYLSSKEAK 221 (237)
T ss_dssp -----TC--CTTTTTCSEEEEEHHHHHHSTTSSEEEECCTTTC--CEEEEE-EEEC---TTCCHHHHHHH-HHTTSHHHH
T ss_pred -----HHHHHHHHCCCEEEEEEHHHHHCCCCCEEEEECCCCCC--EEEEEE-EECC---CCCHHHHHHHH-HHHCCHHHH
T ss_conf -----99999970777099874454532666028996699852--587799-9958---99949999999-997899999
Q ss_pred H
Q ss_conf 9
Q gi|254780342|r 256 N 256 (309)
Q Consensus 256 ~ 256 (309)
.
T Consensus 222 ~ 222 (237)
T 2hxw_A 222 E 222 (237)
T ss_dssp H
T ss_pred H
T ss_conf 9