HHsearch results for GI: 254780342 and protein with PDBid: 2vha_A

>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=96.34  E-value=0.041  Score=32.13  Aligned_cols=163  Identities=12%  Similarity=0.150  Sum_probs=85.6

Q ss_pred             CCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHH
Q ss_conf             69848998564057888851498139998404641356666553047023013566853567863446412345535655
Q gi|254780342|r   53 LGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIA  132 (309)
Q Consensus        53 lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~  132 (309)
                      .+++++.++......+.+|.+|++|+.+.....+ ..  +.    ..+.. ...+......+.+++.   ..+.++.+|.
T Consensus        61 ~~~~v~~~~~~~~~~~~~L~~G~~Di~~~~~~~t-~~--R~----~~~~f-s~p~~~~~~~l~~~k~---~~i~~~~dL~  129 (287)
T 2vha_A           61 PDLQVKLIPITSQNRIPLLQNGTFDFECGSTTNN-VE--RQ----KQAAF-SDTIFVVGTRLLTKKG---GDIKDFADLK  129 (287)
T ss_dssp             TTCEEEEEECCTTTHHHHHHTTSCSEECSSCBCC-HH--HH----TTCEE-EEEEEEEEEEEEEETT---SSCCSGGGGT
T ss_pred             CCEEEEEEECCHHHHHHHHHCCCCCEEECCCCCC-HH--HH----HHCCC-CCCCCCCCCEEEEECC---CCCCCHHHCC
T ss_conf             8706999987999999999869964341134466-45--65----43245-5430004725777548---9878987808


Q ss_pred             HHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCHHH--HC----
Q ss_conf             556654420135785432005558766403545221001036652018999999965993699941242232--01----
Q gi|254780342|r  133 KYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPIN--SD----  206 (309)
Q Consensus       133 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~~--~~----  206 (309)
                             ++.+|...+.................   .+++....   ..++.+++.+|+.+++..+.+....  ..    
T Consensus       130 -------g~~v~v~~gs~~~~~l~~~~~~~~~~---~~iv~~~~---~~~~~~~l~~grvD~~i~~~~~~~~~~~~~~~~  196 (287)
T 2vha_A          130 -------GKAVVVTSGTTSEVLLNKLNEEQKMN---MRIISAKD---HGDSFRTLESGRAVAFMMDDALLAGERAKAKKP  196 (287)
T ss_dssp             -------TCEEEEETTSHHHHHHHHHHHHTTCC---CEEEEESS---HHHHHHHHHTTSCSEEEEEHHHHHHHHTTSSSG
T ss_pred             -------CCCEEECCCCHHHHHHHHHHHHHCCC---CCEEECCH---HHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCCC
T ss_conf             -------98122137866999999988873789---63465221---789999998699409996149999999965788


Q ss_pred             CCCEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHHHHHHC
Q ss_conf             585140078654677865835442777787488999998740
Q gi|254780342|r  207 LNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI  248 (309)
Q Consensus       207 ~dl~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L~~~  248 (309)
                      -.++++..+..     ......++++    .+|+..+.+++.
T Consensus       197 ~~~~~~~~~~~-----~~~~~~av~k----~~~~L~~~in~~  229 (287)
T 2vha_A          197 DNWDIVGKPQS-----QEAYGCMLRK----DDPQFKKLMDDT  229 (287)
T ss_dssp             GGEEEESCCSC-----EEEEEEEECT----TCHHHHHHHHHH
T ss_pred             CCEEEECCCCC-----CCEEEEEEEC----CCHHHHHHHHHH
T ss_conf             86799378777-----6318999948----999999999999