HHsearch results for GI: 254780342 and protein with PDBid: 2vpn_A
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A
Probab=95.32 E-value=0.15 Score=28.47 Aligned_cols=238 Identities=9% Similarity=0.008 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEE----CCHHHHHHHHHCCCCEEEEEEE--------------CC----CCH-------
Q ss_conf 999999999999610698489985----6405788885149813999840--------------46----413-------
Q gi|254780342|r 38 IAATTAMTSVILEEILGYKTNIKL----LAVPVTFRSLKNKGIDIFMGYW--------------YP----SLE------- 88 (309)
Q Consensus 38 ~~v~a~i~~~iLE~~lGy~Ve~~~----~~~~~~~~al~~G~iD~~~e~w--------------~p----~~~------- 88 (309)
....++..+..+|++.+-+|++-+ ++...+++++.+|.||+..-.- .| +..
T Consensus 15 ~~~~~~~fa~~v~e~t~G~v~i~~~g~Lg~~~e~~~~v~~G~id~~~~~~~~~~~~~p~~~v~~lP~~~~s~~~~~~~~~ 94 (316)
T 2vpn_A 15 QDVFAQAFKGYVEDNSDHTVQVYRFGELGESDDIMEQTQNGILQFVNQSPGFTGSLIPSAQIFFIPYLMPTDMDTVLEFF 94 (316)
T ss_dssp HHHHHHHHHHHHHHSSSCEEEEECTTCC----CHHHHHHTTSCSEEEECHHHHHHHSGGGGGGGSTTCSCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCEECCHHHHHHHHHCCCCCEEEECHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 89999999999998669879999899127779999999779838898766665102512566616225466999999853
Q ss_pred -------HHHHHHHHCCCEEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
Q ss_conf -------5666655304702301356685356786344641234553565555665442013578543200555876640
Q gi|254780342|r 89 -------KFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINN 161 (309)
Q Consensus 89 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 161 (309)
..+.+...+.++..++....+.. .+.. ...+.+++||+ +..+-+.+. ......++.
T Consensus 95 ~~~~~~~~~~~~~~~~~gv~~L~~~~~g~~-~~~t-----~~pi~s~~DLk-------G~kiR~~~~----~~~~~~~~~ 157 (316)
T 2vpn_A 95 DESKAINEMFPKLYAEHGLELLKMYPEGEM-VVTA-----DEPITSPEDFD-------NKKIRTMTN----PLLAETYKA 157 (316)
T ss_dssp HHCHHHHTHHHHHHHTTTEEEEEEEEEEEE-EEEE-----SSCCCSGGGGT-------TCEEEECSC----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCEEEEEECCCCE-EEEC-----CCCCCCHHHHC-------CCEEEECCC----CHHHHHHHH
T ss_conf 005789999999998619677787147853-5536-----98889978976-------880762488----058999997
Q ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCHH-HHCCCC-EEECCCCCCCCCCHHHHHHHHCHHHHHHCH
Q ss_conf 354522100103665201899999996599369994124223-201585-140078654677865835442777787488
Q gi|254780342|r 162 NKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPI-NSDLNI-HYLPGGEEISGFGEASVYTVVRSDYLDKCP 239 (309)
Q Consensus 162 ~~l~~~~~~~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~-~~~~dl-~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P 239 (309)
.|. ..++.+ +.+++.|+++|.++-.....+... +.-++. .++-++... +... ..+++++.-++-|
T Consensus 158 lGa-----~pv~~p----~~evy~aLq~G~iDg~~~~~~~~~~~~~~ev~~y~~~~~~~--~~~~--~~~~n~~~w~~L~ 224 (316)
T 2vpn_A 158 FGA-----TPTPLP----WGEVYGGLQTGIIDGQENPIFWIESGGLYEVSPNLTFTSHG--WFTT--AMMANQDFYEGLS 224 (316)
T ss_dssp HTC-----EEEECC----GGGHHHHHHHTSCSEEEEEHHHHHHTTGGGTCCEEEECCCC--EEEE--EEEEEHHHHHHSC
T ss_pred CCC-----CCCCCC----CCCCCHHHHCCCEEEEECCCCCCCCCCEEEEECCEECCCCC--CCHH--HHHHHHHHHHHCC
T ss_conf 598-----432453----00123065358610475252100122001110441314333--4336--8774399997399
Q ss_pred -HHHHHHHHC---------CCCHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf -999998740---------899899999999998459-------998999999999859999987547545677137999
Q gi|254780342|r 240 -NISRLLKNI---------KFSVALENEMMKLILNNK-------QDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQ 302 (309)
Q Consensus 240 -~~~~~L~~~---------~ls~~~~~~l~~~v~~~g-------~~~~~vA~~wL~~n~~~~~~Wl~~~~~~~~~~~~~~ 302 (309)
+..++|... ........+....+...| .++++ -++|.+.-+..|++|.+-.- .+|++..++
T Consensus 225 ~~~q~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~v~~~~~~e-~a~~~~~~~~~~~~~~~~~g-~~~~~~~d~ 302 (316)
T 2vpn_A 225 EEDQQLVQDAADAAYDHTIEHIKGLSEESLEKIKAASDEVTVTRLNDEQ-IQAFKERAPQVEEKFIEMTG-EQGQELLDQ 302 (316)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHCTTCEEEECCHHH-HHHHHTTHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHH-HHHHHHHHHHHHHHHHHHCC-HHHHHHHHH
T ss_conf 9999999999999999999999999999999999769985999899999-99999999999999999729-899999999
Q ss_pred HHHHH
Q ss_conf 99874
Q gi|254780342|r 303 LERFM 307 (309)
Q Consensus 303 ~~~~~ 307 (309)
++..+
T Consensus 303 ~~a~~ 307 (316)
T 2vpn_A 303 FKADL 307 (316)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999