HHsearch results for GI: 254780342 and protein with PDBid: 3fzv_A
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, protein structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=92.09 E-value=0.59 Score=24.58 Aligned_cols=199 Identities=7% Similarity=-0.019 Sum_probs=107.6
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEEE
Q ss_conf 45883799425886999999999999961069848998564057888851498139998404641356666553047023
Q gi|254780342|r 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKL 102 (309)
Q Consensus 23 ~~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~~~ 102 (309)
....+++||..+.....++..+++.+.++.=+.++++...++..+.+.|.+|++|+..-+-.+... ...
T Consensus 92 ~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~P~i~l~~~~~~~~~~~~~L~~~~~Di~i~~~~~~~~----------~~~- 160 (306)
T 3fzv_A 92 VIAGQIDIGCFETVAPLYLPGLIAGFRQAYPGVEIRIRDGEQQELVQGLTSGRFDLAFLYEHDLDS----------TIE- 160 (306)
T ss_dssp CCCEEEEEEEEGGGHHHHHHHHHHHHHHHCTTEEEEEEEECHHHHHHHHHHTSCSEEEECSSSCCT----------TEE-
T ss_pred CCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHCCCCCEEEEECCCCCC----------CCE-
T ss_conf 777526888504789999899999998538974999997877999999985997368883578998----------725-
Q ss_pred ECCCCCCCEEEEEEEHHHH--HCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHH
Q ss_conf 0135668535678634464--12345535655556654420135785432005558766403545221001036652018
Q gi|254780342|r 103 VAENLQGAKYMLAVNDVGF--ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180 (309)
Q Consensus 103 ~~~~~~~~~~~~~v~~~~~--~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~ 180 (309)
.-..+......+++++.-+ .....++++|.++. .+..+ ....+.......+..++... ..+...+ .
T Consensus 161 ~~~l~~~~~~~v~~~~~~~l~~~~~~~~~dl~~~~------~i~~~-~~~~~~~~~~~~~~~g~~~~-~~~~~~~----~ 228 (306)
T 3fzv_A 161 TEPLMPPQRPHALLPEGHRFAGQAQVSLRDLCLEP------MILLD-VQPSRTYFVSLFEELGLTPN-IAFSSPS----I 228 (306)
T ss_dssp EEESSCCBCCEEEEETTCTTTTSSEECHHHHTTSC------EEEEC-CTTHHHHHHHHHHHTTCCCC-EEEEESC----H
T ss_pred EEEECCCCEEEEEECCCHHHHCCCCCCHHHHHCCC------EEEEC-CCCCCCHHHHHHHHCCCCCC-CCCCCCC----H
T ss_conf 89921462689996264265337889999981799------89845-98765104556765387754-2546788----8
Q ss_pred HHHHHHHHCCCCEEEEEECC--CHHHHCCCCEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHHHHHHC
Q ss_conf 99999996599369994124--223201585140078654677865835442777787488999998740
Q gi|254780342|r 181 SQIRRDQRNNIPAVFLSWEP--HPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI 248 (309)
Q Consensus 181 a~l~~A~~~~~~~v~~~wsp--~~~~~~~dl~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L~~~ 248 (309)
..+..++..|..+.+..-.+ +.......++.++.+... +...+..+.+++ ....|.+..|++-+
T Consensus 229 ~~~~~~v~~g~gi~~lp~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~li~~~~-~~~~~~~~~fi~~l 294 (306)
T 3fzv_A 229 EMVRGMVGQGFGFSLLVTRPHSECTYDGKKVVMVDLAEPV---STSGLAAAWLKR-AQLTKPARLFVDYC 294 (306)
T ss_dssp HHHHHHHHTTSCBEEECCCCSCSBCTTSCBEEEEEESSCC---CBCCCEEEEETT-SCCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEEEHHHHHHHHHCCCCEEEEECCCCC---CCCEEEEEEECC-CCCCHHHHHHHHHH
T ss_conf 9999999809949994258788987569977998677887---642799999898-98999999999999