HHsearch results for GI: 254780342 and protein with PDBid: 3ho7_A
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=90.73 E-value=0.81 Score=23.69 Aligned_cols=195 Identities=11% Similarity=0.054 Sum_probs=99.9
Q ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEEEEC
Q ss_conf 88379942588699999999999996106984899856405788885149813999840464135666655304702301
Q gi|254780342|r 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA 104 (309)
Q Consensus 25 ~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~~~~~ 104 (309)
.++|+||.....+.+++..+++...++.=+.++++..+.+..+.++|.+|++|+..-. .|..... +...
T Consensus 10 ~G~l~ig~~~s~~~~~lp~~l~~f~~~~P~v~l~l~~~~~~~~~~~L~~g~iD~~i~~-~~~~~~~---------l~~~- 78 (232)
T 3ho7_A 10 TGRLNIAVLPTIAPYLLPRVFPIWKKELAGLEIHVSEMQTSRCLASLLSGEIDMAIIA-SKAETEG---------LEDD- 78 (232)
T ss_dssp CEEEEEEECTTTHHHHHHHHHHHHHHHSTTEEEEEEECCHHHHHHHHHHTSCSEEEES-SCCCCTT---------EEEE-
T ss_pred EEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCEEEEEEE-CCCCCCC---------CEEE-
T ss_conf 2799999437789999999999999988896899998982899999977984289863-4765543---------0034-
Q ss_pred CCCCCCEEEEEEEHHHH--HCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHH
Q ss_conf 35668535678634464--1234553565555665442013578543200555876640354522100103665201899
Q gi|254780342|r 105 ENLQGAKYMLAVNDVGF--ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182 (309)
Q Consensus 105 ~~~~~~~~~~~v~~~~~--~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~a~ 182 (309)
........++++..-+ .....++.++.+. ..+....+...+....+.....++......+...+ +..
T Consensus 79 -~l~~~~~~lv~~~~h~l~~~~~~~~~~l~~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 147 (232)
T 3ho7_A 79 -LLYYEEFLGYVSRCEPLFEQDVIRTTEVNPH------RLWLLDEGHCFRDQLVRFCQMKGLHERQTAYSGGS----MEA 147 (232)
T ss_dssp -EEEEEEEEEEECTTSGGGGSSSBCGGGCCGG------GBCCCTTTTTTTSTTHHHHTCTTTTCSSEEEESCC----HHH
T ss_pred -EECCHHHHHHHCCCCCCCCCCCCCHHHHCCC------CEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCC----HHH
T ss_conf -2000102221113454332222213331455------37982599742679999999759988765013588----899
Q ss_pred HHHHHHCCCCEEEEEECCCHHHHC----CCCEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHHHHHHC
Q ss_conf 999996599369994124223201----585140078654677865835442777787488999998740
Q gi|254780342|r 183 IRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI 248 (309)
Q Consensus 183 l~~A~~~~~~~v~~~wsp~~~~~~----~dl~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L~~~ 248 (309)
+...+.+|..+.+ -|...... ..++.+.-+... +..++..+.+++. ...|.+..|++.+
T Consensus 148 ~~~lv~~g~Gia~---lP~~~~~~~~~~~~l~~~p~~~~~---~~~~i~lv~~~~~-~~~~~~~~fi~~l 210 (232)
T 3ho7_A 148 FMRLVESGQGITF---IPQLTVEQLSPSQKELVRPFGMPR---PVREVRLAVRQDY-SRRKLREQLIGLL 210 (232)
T ss_dssp HHHHHHTTCCEEE---EEGGGGGGSCHHHHTTEECBCSSE---EEEEEEEEEETTC-SCHHHHHHHHHHH
T ss_pred HHHHHHHCCEEEE---ECHHHHHHHCCCCCEEEEECCCCC---CEEEEEEEEECCC-CCCHHHHHHHHHH
T ss_conf 9999993998998---309999855027988999889998---6559999998939-8899999999999