HHsearch results for GI: 254780342 and protein with PDBid: 3hv1_A
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=95.92 E-value=0.05 Score=31.56 Aligned_cols=194 Identities=14% Similarity=0.099 Sum_probs=99.4
Q ss_pred CCCCCEEEEC-CC---CC----HH---HHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCHHHH
Q ss_conf 4588379942-58---86----99---99999999999610698489985640578888514981399984046413566
Q gi|254780342|r 23 DSCTPVRFAD-TG---WT----DI---AATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFI 91 (309)
Q Consensus 23 ~~~~~I~ig~-~~---wt----e~---~v~a~i~~~iLE~~lGy~Ve~~~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~ 91 (309)
.+.++|+||. .+ |+ .+ -+...++..+.++ +|++++++..+..-+..+|.+|++|+.+.....+. .
T Consensus 18 ~~~~~l~vg~~~~~pP~~~~~~~g~~~G~~vdl~~~i~~~-lg~~v~~~~~~~~~~~~~l~~g~~Di~~~~~~~~~-~-- 93 (268)
T 3hv1_A 18 TKEKKIKIGFDATFVPMGYEEKDGSYIGFDIDLANAVFKL-YGIDVEWQAIDWDMKETELKNGTIDLIWNGYSVTD-E-- 93 (268)
T ss_dssp HHHTEEEEEECTEETTTEEECTTSCEECHHHHHHHHHHHT-TTCEEEEEECCGGGHHHHHHHTSCSEECSSCBCCH-H--
T ss_pred HCCCEEEEEECCCCCCCEEECCCCCEEEEHHHHHHHHHHH-HCCCEEECCCCHHHHHHHHHCCCCCCCCCCCCCCH-H--
T ss_conf 6099799998789889558999998887299999999999-69965751588899999998699760023266785-4--
Q ss_pred HHHHHCCCEEEECCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEE
Q ss_conf 66553047023013566853567863446412345535655556654420135785432005558766403545221001
Q gi|254780342|r 92 APYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171 (309)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~ 171 (309)
+. . .......+......+++++. ..+.++++|. +..+|...+...............-......+
T Consensus 94 r~----~-~~~~s~py~~~~~~~v~~~~---~~~~~~~dl~-------~~~i~v~~gs~~~~~~~~~~~~~~~~~~~~~i 158 (268)
T 3hv1_A 94 RK----Q-SADFTEPYMVNEQVLVTKKS---SGIDSVAGMA-------GKTLGAQAGSSGYDAFNASPKILKDVVANQKV 158 (268)
T ss_dssp HH----T-TCEECCCCEEECEEEEEEGG---GCCCSSGGGT-------TCCEEEETTCHHHHHHHHCTTTTTTTSGGGCE
T ss_pred HH----H-CEEECCCCCCCCEEEEEECC---CCCCCHHHHC-------CCCEEEECCCHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 44----1-15632121356436898689---9999978957-------98238866850999999866555431667324
Q ss_pred ECCCCCCHHHHHHHHHHCCCCEEEEEECCCHH--HHCCC----CEEECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHHHH
Q ss_conf 03665201899999996599369994124223--20158----5140078654677865835442777787488999998
Q gi|254780342|r 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPI--NSDLN----IHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245 (309)
Q Consensus 172 ~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~--~~~~d----l~~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L 245 (309)
+.-+. ..++..++.+|+.+++....+-.. ..+.+ ++.+..+. ++.....++++ ++|++.+.+
T Consensus 159 ~~~~~---~~~~l~~L~~grvD~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~k----~~~~L~~~i 226 (268)
T 3hv1_A 159 VQYST---FTQALIDLNSGRIDGLLIDRVYANYYLEKSGVLDQYNVMPAGY-----EGESFAVGARK----VDKTLIKKI 226 (268)
T ss_dssp EEESS---HHHHHHHHHHTSCSEEEEEHHHHHHHHHHTTCGGGEEEEECSS-----CCEEECCEECT----TCHHHHHHH
T ss_pred EECCC---HHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCEEECCCCC-----CCCEEEEEEEC----CCHHHHHHH
T ss_conf 40399---9999999976975799943899999998589888303337777-----77438999818----999999999
Q ss_pred HH
Q ss_conf 74
Q gi|254780342|r 246 KN 247 (309)
Q Consensus 246 ~~ 247 (309)
++
T Consensus 227 n~ 228 (268)
T 3hv1_A 227 NQ 228 (268)
T ss_dssp HH
T ss_pred HH
T ss_conf 99