HHsearch results for GI: 254780342 and protein with PDBid: 3ir1_A
>3ir1_A Outer membrane lipoprotein GNA1946; D-methionine cultured, protein binding; 2.15A {Neisseria meningitidis}
Probab=98.02 E-value=0.00015 Score=48.01 Aligned_cols=207 Identities=12% Similarity=0.043 Sum_probs=110.3
Q ss_pred CCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC-CHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEEEEC
Q ss_conf 8379942588699999999999996106984899856-405788885149813999840464135666655304702301
Q gi|254780342|r 26 TPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL-AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA 104 (309)
Q Consensus 26 ~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~~~-~~~~~~~al~~G~iD~~~e~w~p~~~~~~~~~~~~~~~~~~~ 104 (309)
++|+||....+-+.+..+.++..+++. ||++|++.. +....-.||.+|+||+-.--..|....+-.+ ....++.++
T Consensus 1 k~i~vg~~~~p~~~~~~e~vk~~~k~~-Gi~vevv~f~D~~~~N~AL~~GeiDaN~fQh~~yl~~~n~~--~g~~L~~v~ 77 (245)
T 3ir1_A 1 KEIVFGTTVGDFGDMVKEQIQPELEKK-GYTVKLVEFTDYVRPNLALAEGELDINVFQHKPYLDDFKKE--HNLDITEVF 77 (245)
T ss_dssp CEEEEEEETTHHHHHHHHTHHHHHHTT-TCEEEEEEESSSSHHHHHHHHTSCSEEEEECHHHHHHHHHH--HTCCEEEEE
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHC-CCEEEEEEECCCCHHHHHHHCCCCCEEHHCCHHHHHHHHHH--CCCCEEEEE
T ss_conf 959998078987999999988999965-97699999568521779986699652312279999999998--599669986
Q ss_pred CCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHH---------HHHH-------CCCCCCCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 35668535678634464123455356555566---------5442-------0135785432005558766403545221
Q gi|254780342|r 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKK---------ELGA-------KIYGIEPGNEGNQRILDMINNNKFSLKG 168 (309)
Q Consensus 105 ~~~~~~~~~~~v~~~~~~~~i~~~~dl~~~~~---------~~~~-------~~~g~~~~~~~~~~~~~~~~~~~l~~~~ 168 (309)
..+..- .+++.. .+++++++++-+. ..+. .++...++.........-+......+
T Consensus 78 ~~~~~p-~glYS~------k~ksl~dlp~Ga~IaIpnD~sn~~RaL~lL~~~GlI~lk~~~~~~~~t~~DI~~Npk~l-- 148 (245)
T 3ir1_A 78 QVPTAP-LGLYPG------KLKSLEEVKDGSTVSAPNDPSNFARVLVMLDELGWIKLKDGINPLTASKADIAENLKNI-- 148 (245)
T ss_dssp ECCBCC-CEEEES------SCCCGGGCCTTCEEEEECSHHHHHHHHHHHHHTTSSEECTTCCGGGCCGGGEEECTTCC--
T ss_pred EEEECC-EEEECC------CCCCHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHCCCCCC--
T ss_conf 654424-276516------86866567999989974586589999999987893896589886647764541556466--
Q ss_pred EEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHCCCCE--EECCCCCCCCCCHHHHHHHHCHHHHHHCHHHHHHHH
Q ss_conf 001036652018999999965993699941242232015851--400786546778658354427777874889999987
Q gi|254780342|r 169 FRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIH--YLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLK 246 (309)
Q Consensus 169 ~~~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~~~~~dl~--~Ledp~~~~~~p~~~~~~vv~~~~~~~~P~~~~~L~ 246 (309)
++++...+.+ .+++ .+.++...|.+...-...+.. ...+|.. +|....++|++- ++.|.+.++.+
T Consensus 149 -~~~ev~~a~l----~~al--~dvD~avi~~~~~~~agl~~~~~l~~e~~~-----~y~~~~vvr~~d-~d~~~ik~l~~ 215 (245)
T 3ir1_A 149 -KIVELEAAQL----PRSR--ADVDFAVVNGNYAISSGMKLTEALFQEPSF-----AYVNWSAVKTAD-KDSQWLKDVTE 215 (245)
T ss_dssp -EEEEECGGGS----GGGG--GTSSEEEECHHHHHHTTCCGGGCSEECCCC-----TTCCEEEEEGGG-TTCHHHHHHHH
T ss_pred -EEEECCHHHH----HHHC--CCCCEEEECCHHHHHCCCCHHHCEEECCCC-----CEEEEEEEECCC-CCCHHHHHHHH
T ss_conf -5787688885----5532--567789971406978797823400107888-----728999980766-79899999999
Q ss_pred HCCCCHHHHHHHH
Q ss_conf 4089989999999
Q gi|254780342|r 247 NIKFSVALENEMM 259 (309)
Q Consensus 247 ~~~ls~~~~~~l~ 259 (309)
-+ ..+++.+..
T Consensus 216 a~--~s~~v~~~i 226 (245)
T 3ir1_A 216 AY--NSDAFKAYA 226 (245)
T ss_dssp HT--TSHHHHHHH
T ss_pred HH--CCHHHHHHH
T ss_conf 97--799999999