HHsearch results for GI: 254780342 and protein with PDBid: 3o66_A
>3o66_A Glycine betaine/carnitine/choline ABC transporter; structural genomics, PSI-2, protein structure initiative; HET: PGE; 1.86A {Staphylococcus aureus subsp}
Probab=100.00 E-value=8.4e-45 Score=309.70 Aligned_cols=250 Identities=11% Similarity=0.090 Sum_probs=202.7
Q ss_pred CCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEE----ECCHHHHHHHHHCCCCEEEEEEECCCCHHHH----
Q ss_conf 58345883799425886999999999999961069848998----5640578888514981399984046413566----
Q gi|254780342|r 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK----LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFI---- 91 (309)
Q Consensus 20 ~~~~~~~~I~ig~~~wte~~v~a~i~~~iLE~~lGy~Ve~~----~~~~~~~~~al~~G~iD~~~e~w~p~~~~~~---- 91 (309)
++..++++|+||+++|+|+.++++|++++||+.+||+|+++ .+++.++|+||++|+||+++|.|.++....+
T Consensus 3 ~~~~~~~~I~Ig~~~w~e~~~~a~i~~~iLe~~g~~~v~~~~~~~~g~~~~~~~al~~GdiDv~~e~w~g~~~~~~~~~~ 82 (282)
T 3o66_A 3 ASKSTKNDVKITALSTSESQIISHMLRLLIEHDTHGKIKPTLVNNLGSSTIQHNALINGDANISGVRYNGTDLTGALKEA 82 (282)
T ss_dssp ----CCCCCEEEEESSHHHHHHHHHHHHHHHHHTTTSCCCEEEEEESSHHHHHHHHHHTSCSEEEEEEHHHHHHTTTCCC
T ss_pred CCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCEEEHHCCCHHHHHHHCCC
T ss_conf 67688998899717760999999999999985459834888657776289999999869971840420445777663356
Q ss_pred -------------HHHHHCCCEEEECCCCCCCEEEEEEEHHHHH-CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCH--HH
Q ss_conf -------------6655304702301356685356786344641-2345535655556654420135785432005--55
Q gi|254780342|r 92 -------------APYLEEGSIKLVAENLQGAKYMLAVNDVGFA-LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQ--RI 155 (309)
Q Consensus 92 -------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~i~~~~dl~~~~~~~~~~~~g~~~~~~~~~--~~ 155 (309)
.....+..+....+.+.+....++|+++.+. .+++++++|.+... ...+|+++++..+. ..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~a~~~~i~~i~dl~~~~~---~~~~g~~~~~~~~~~~~~ 159 (282)
T 3o66_A 83 PIKDPKKAMIATQQGFKKKFDQTFFDSYGFANTYAFMVTKETAKKYHLETVSDLAKHSK---DLRLGMDSSWMNRKGDGY 159 (282)
T ss_dssp CCCSHHHHHHHHHHHHHHHHSEEECCCCSCBCCEEEEECHHHHHHHTCSBSGGGTTTGG---GCEEEEEGGGCC--CCSH
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHCCCHHHCCCCCCCC---CCEECCCCCCCCCCCCHH
T ss_conf 65787999999986565327836505643234555435687863348022010013331---111234754445442035
Q ss_pred HHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHCCCCEEECCCCCCCCCCHHHHHHHHCHHHH
Q ss_conf 87664035452210010366520189999999659936999412422320158514007865467786583544277778
Q gi|254780342|r 156 LDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYL 235 (309)
Q Consensus 156 ~~~~~~~~l~~~~~~~~~~s~~~~~a~l~~A~~~~~~~v~~~wsp~~~~~~~dl~~Ledp~~~~~~p~~~~~~vv~~~~~ 235 (309)
....+.|++.. . ++..++.+.+++|+++++|+|+++|+|||++.+|+|++|+||++.+ |++++.+++|++|+
T Consensus 160 ~~l~~~y~~~~--~----~~~~~~~a~~~~A~~~~~~~v~~~w~p~~~~~~~~l~~LeDp~~~~--~~~~v~~~~~~~~~ 231 (282)
T 3o66_A 160 EGFKKEYGFDF--G----TVRPMQIGLVYDALNTEKLDVALGYSTDGRIAAYDLKVLKDDKQFF--PPYAASAVATNELL 231 (282)
T ss_dssp HHHHHHHCCCC--S----EEEEECGGGHHHHHHTTSCSEEEEETTCHHHHHTTCEECBCTTCCS--CCCBEEEEEEHHHH
T ss_pred HHHHHCCCCCC--C----CCCCCCHHHHHHHHHCCCCEEEEECCCCHHHCCCCCEECCCCCCCC--CCCCCHHHHHHHHH
T ss_conf 66654045566--5----5422237889999864897699804885341146701337871237--63111024404677
Q ss_pred HHCHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 7488999998740--89989999999999845999899999999985
Q gi|254780342|r 236 DKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280 (309)
Q Consensus 236 ~~~P~~~~~L~~~--~ls~~~~~~l~~~v~~~g~~~~~vA~~wL~~n 280 (309)
++||+++++|+++ +||+++|++||++|+.+|++|++||++||++|
T Consensus 232 ~~~P~v~~~l~~~~~~lt~~~l~~l~~~v~~~g~~~~~~A~~wL~~n 278 (282)
T 3o66_A 232 RQHPELKTTINKLTGKISTSEMQRLNYEADGKGKEPAVVAEEFLKKH 278 (282)
T ss_dssp HHCTHHHHHHHTTTTCCCHHHHHHHHHHHHTSCCCHHHHHHHHHHHT
T ss_pred HHCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf 77979999999986518999999999999875999999999999974