BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780342|ref|YP_003064755.1| substrate-binding region of
ABC-type glycine betaine transport system [Candidatus Liberibacter
asiaticus str. psy62]
(309 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|83643735|ref|YP_432170.1| proline/glycine betaine ABC transporter periplasmic protein
[Hahella chejuensis KCTC 2396]
gi|83631778|gb|ABC27745.1| ABC-type proline/glycine betaine transport system, periplasmic
components [Hahella chejuensis KCTC 2396]
Length = 312
Score = 258 bits (659), Expect = 7e-67, Method: Composition-based stats.
Identities = 134/309 (43%), Positives = 206/309 (66%), Gaps = 5/309 (1%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
++L L L + A A SC V FAD GWTDI ATTA+TSVIL + LGY T +L
Sbjct: 5 KRLLISGLML--LTSVNAYSAQSCKEVTFADVGWTDITATTALTSVIL-QGLGYSTESQL 61
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
L+VPVT++SL+N +D+F+G W P++E I PY+E S+++V +NL GAKY LAV
Sbjct: 62 LSVPVTYKSLENGDVDVFLGNWMPTMEADIRPYVENKSVEVVGKNLDGAKYTLAVPSYVA 121
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
G+K++ DIAK+ + +IYGIEPGN+GN+ I DMI+ N F+LK F+++E+SE S
Sbjct: 122 EAGVKTFADIAKHADKFKDRIYGIEPGNDGNRLIQDMIDKNAFALKEFKVVESSEAGMLS 181
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCP 239
Q++R + VFL+WEPHP+N++ + YL GG++ FG ASV+T VR +++C
Sbjct: 182 QLKRAVKRKEWIVFLAWEPHPMNANFELTYLSGGDDYFGPNFGGASVFTNVRKGLMNECG 241
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDP 299
N+++LL N++FS+ +ENE+M IL++K+ + + L+ + D ++ WL GV T DG+
Sbjct: 242 NLAQLLNNLEFSLQMENEVMGAILDDKKKPEVAAKAWLKENFDSVEGWLQGVKTIDGKPA 301
Query: 300 SRQLERFMN 308
+ +++ ++
Sbjct: 302 APAVKKHLD 310
>gi|152986596|ref|YP_001351474.1| hypothetical protein PSPA7_6163 [Pseudomonas aeruginosa PA7]
gi|150961754|gb|ABR83779.1| hypothetical protein PSPA7_6163 [Pseudomonas aeruginosa PA7]
Length = 312
Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats.
Identities = 135/302 (44%), Positives = 193/302 (63%), Gaps = 5/302 (1%)
Query: 1 MY--KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K + + L + A + +SC VRFAD GWTDI TTA+T +LE LGYKT
Sbjct: 1 MKGCKSWLLVVSLCAPLAAQAAEPESCGSVRFADVGWTDITVTTAVTRQVLES-LGYKTR 59
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ LL+VPVT+RSL N +D+F+G W P++ I Y E+G+++ + NL+GAKY LAV
Sbjct: 60 VNLLSVPVTYRSLANNDLDVFLGNWMPTMTNDIKQYAEKGTVETLRANLEGAKYTLAVPQ 119
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ G++S+ DIAK+ +LG KIYGIEPGN+GN+ MI+ N F L F+L+E+SE
Sbjct: 120 YVYDGGLRSFADIAKFSDKLGNKIYGIEPGNDGNRVAQSMIDKNAFELGRFKLVESSEAG 179
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLD 236
SQ++R R N VFL WEPHP+N+ + YL GG++ +G A++YT VR Y
Sbjct: 180 MLSQVQRAIRRNQWVVFLGWEPHPMNTRFQMKYLEGGDDFFGPNYGGATIYTNVRKGYAQ 239
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDG 296
+C N+ RLLKN+ F++ +EN++M +LN+ + + + L+ HP+ L WL GVTT DG
Sbjct: 240 ECANVGRLLKNLSFTLEMENKLMDAVLNDNKKPEEAAKAWLKDHPEQLDAWLAGVTTRDG 299
Query: 297 QD 298
Q
Sbjct: 300 QP 301
>gi|150375863|ref|YP_001312459.1| substrate-binding region of ABC-type glycine betaine transport
system [Sinorhizobium medicae WSM419]
gi|150030410|gb|ABR62526.1| Substrate-binding region of ABC-type glycine betaine transport
system [Sinorhizobium medicae WSM419]
Length = 336
Score = 256 bits (654), Expect = 3e-66, Method: Composition-based stats.
Identities = 130/312 (41%), Positives = 193/312 (61%), Gaps = 4/312 (1%)
Query: 1 MYKILAVCL-FLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+ +I A+ L T ++ A + +SC VRF+D GWTDI +TTA+ S ILE LGY
Sbjct: 26 LKQITAMTTGLLMTIGVANAAEPESCKTVRFSDVGWTDITSTTAVASTILEA-LGYAPES 84
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
KLL++PVT+ S+KNK ID+++G W PS+E +LE+ SI+++ NL GAKY AV
Sbjct: 85 KLLSIPVTYASMKNKDIDVYLGDWQPSMEADRKSFLEDKSIEVIGPNLTGAKYTFAVPKY 144
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
G+K D+ K+ + G KIYGIEPGN GN+ ILDMIN F L G+ L+E+SE
Sbjct: 145 VADAGVKDISDLQKFADKFGRKIYGIEPGNNGNRMILDMINKGDFGLTGWELVESSEQGM 204
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDK 237
+++ R ++ VFL W PHP+N+ I YL G + +G A +YT +R+ Y +
Sbjct: 205 LAEVERATKDEQWIVFLGWAPHPMNTRYRIDYLSGADAYFGPNYGGADIYTNIRAGYAQE 264
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQ 297
CPN++R + N++F++ +ENE+M ILN+ +D + L+ HPD + WL GVTT+DG
Sbjct: 265 CPNVARFVTNLRFTLDMENEIMNGILNDGKDPKEAAADWLKAHPDAVAPWLEGVTTYDGG 324
Query: 298 DPSRQLERFMNN 309
+ +E + +
Sbjct: 325 PAAGAVEMALKS 336
>gi|298292986|ref|YP_003694925.1| choline ABC transporter periplasmic protein [Starkeya novella DSM
506]
gi|296929497|gb|ADH90306.1| choline ABC transporter, periplasmic binding protein [Starkeya
novella DSM 506]
Length = 319
Score = 256 bits (653), Expect = 3e-66, Method: Composition-based stats.
Identities = 131/295 (44%), Positives = 192/295 (65%), Gaps = 3/295 (1%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKG 75
+ A + +C VRFAD GWTDI ATTA+ S ILE LGY ++L+VPVT++S++ K
Sbjct: 25 TAQAAEPAACKTVRFADVGWTDITATTALASSILEA-LGYTPKTQVLSVPVTYKSMQTKD 83
Query: 76 IDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK 135
ID+F+G W P++E + PY ++ S++++ NL+GAKY LAV + G+KS+ DIAK+K
Sbjct: 84 IDVFLGNWMPTMEADLKPYRDDKSVEVIGVNLEGAKYTLAVPTYLYDEGLKSFADIAKFK 143
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
+LG KIYGIEPGN+GN+ ILDMI ++KF LKGF L+E+SE +Q+ R + VF
Sbjct: 144 DKLGGKIYGIEPGNDGNRLILDMIKDDKFGLKGFDLVESSEQGMLAQVERASKRKEAIVF 203
Query: 196 LSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVA 253
L WEPHP+NS + YL GG+++ +G A++YT R+ Y +CPN+ +KN+KFS+
Sbjct: 204 LGWEPHPMNSKYKMSYLSGGDDVFGPNYGGATIYTNTRAGYTTECPNVGTFIKNLKFSLD 263
Query: 254 LENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
EN +M IL + D L+ +P + + WL GVTT DG+ ++ +
Sbjct: 264 TENVVMGYILLDGMDPAKAAEKWLKANPTVWEPWLAGVTTIDGKPAVPAVKAALK 318
>gi|260767495|ref|ZP_05876431.1| L-proline glycine betaine binding ABC transporter protein proX
[Vibrio furnissii CIP 102972]
gi|260617395|gb|EEX42578.1| L-proline glycine betaine binding ABC transporter protein proX
[Vibrio furnissii CIP 102972]
Length = 309
Score = 254 bits (648), Expect = 1e-65, Method: Composition-based stats.
Identities = 131/311 (42%), Positives = 195/311 (62%), Gaps = 6/311 (1%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M ++ F +S AD+C VRFAD GWTDI ATTA+T+ +L LGY+T I
Sbjct: 1 MRHLMT---FTAATLLSLNAYADNCNTVRFADVGWTDITATTAVTTELL-HGLGYQTKID 56
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
LL+VPVT+ S+ N ID+F+G W P++E IA Y + G+++ + NL+GAKY LAV
Sbjct: 57 LLSVPVTYSSMANGDIDVFLGNWMPTMEGDIAKYRDAGTVETLRANLEGAKYTLAVPQYV 116
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ G+ S+ D+A++ +IYGIEPGN+GN+ I MI+NN F L F L+E+SE
Sbjct: 117 YDAGVHSFADLAQHADAFKHRIYGIEPGNDGNRLIQSMIDNNAFDLNTFDLVESSEAGMV 176
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKC 238
SQ++R R FL W PHP+NS++ + YL GG++ +G A+VYT VR Y+ +C
Sbjct: 177 SQVKRAVRRKQWIAFLGWAPHPMNSNVKMAYLSGGDDYFGPNYGGANVYTNVRQGYVSQC 236
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN+ +LL N+ F++ +EN +M+ ILN Q + LR HP++L WL VTT +G+
Sbjct: 237 PNVGQLLNNLSFNLEMENALMEAILNQGQQPSKAAKAWLREHPEVLSKWLSKVTTLNGKP 296
Query: 299 PSRQLERFMNN 309
+ ++ ++N+
Sbjct: 297 AEQAIQDYLNS 307
>gi|15600571|ref|NP_254065.1| hypothetical protein PA5378 [Pseudomonas aeruginosa PAO1]
gi|107104480|ref|ZP_01368398.1| hypothetical protein PaerPA_01005557 [Pseudomonas aeruginosa PACS2]
gi|116053525|ref|YP_793852.1| hypothetical protein PA14_71030 [Pseudomonas aeruginosa UCBPP-PA14]
gi|218894481|ref|YP_002443351.1| putative glycine betaine/L-proline ABC transporter, periplasmic
component [Pseudomonas aeruginosa LESB58]
gi|254237936|ref|ZP_04931259.1| hypothetical protein PACG_04040 [Pseudomonas aeruginosa C3719]
gi|254242930|ref|ZP_04936252.1| hypothetical protein PA2G_03716 [Pseudomonas aeruginosa 2192]
gi|9951701|gb|AAG08763.1|AE004950_6 hypothetical protein PA5378 [Pseudomonas aeruginosa PAO1]
gi|115588746|gb|ABJ14761.1| putative glycine betaine/L-proline ABC transporter, periplasmic
component [Pseudomonas aeruginosa UCBPP-PA14]
gi|126169867|gb|EAZ55378.1| hypothetical protein PACG_04040 [Pseudomonas aeruginosa C3719]
gi|126196308|gb|EAZ60371.1| hypothetical protein PA2G_03716 [Pseudomonas aeruginosa 2192]
gi|218774710|emb|CAW30527.1| putative glycine betaine/L-proline ABC transporter, periplasmic
component [Pseudomonas aeruginosa LESB58]
Length = 312
Score = 254 bits (648), Expect = 1e-65, Method: Composition-based stats.
Identities = 134/302 (44%), Positives = 192/302 (63%), Gaps = 5/302 (1%)
Query: 1 MY--KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K + + L + A + +SC VRFAD GWTDI TTA+T +LE LGYKT
Sbjct: 1 MKGCKSWLLAVSLCAPLAAQAAEPESCASVRFADVGWTDITVTTAVTRQVLES-LGYKTK 59
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ LL+VPVT+RSL N +D+F+G W P++ I Y E+G+++ + NL+GAKY LAV
Sbjct: 60 VNLLSVPVTYRSLANNDLDVFLGNWMPTMTNDIKQYAEKGTVETLRANLEGAKYTLAVPQ 119
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ G++S+ DIAK+ +LG KIYGIEPGN+GN+ MI+ N F L F+L+E+SE
Sbjct: 120 YVYDGGLRSFADIAKFSDKLGNKIYGIEPGNDGNRVAQSMIDKNAFELGKFKLVESSEAG 179
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLD 236
SQ++R R N VFL WEPHP+N+ + YL GG++ +G A++YT VR Y
Sbjct: 180 MLSQVQRAIRRNQWVVFLGWEPHPMNTRFQMKYLEGGDDFFGPNYGGATIYTNVRKGYAQ 239
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDG 296
+C N+ +LLKN+ F++ +EN++M +LN + + + L+ HP+ L WL GVTT DG
Sbjct: 240 ECANVGQLLKNLSFTLEMENKLMDAVLNENKKPEEAAKAWLKDHPEQLDAWLAGVTTRDG 299
Query: 297 QD 298
Q
Sbjct: 300 QP 301
>gi|296392238|ref|ZP_06881713.1| putative glycine betaine/L-proline ABC transporter, periplasmic
component [Pseudomonas aeruginosa PAb1]
Length = 312
Score = 254 bits (648), Expect = 1e-65, Method: Composition-based stats.
Identities = 134/302 (44%), Positives = 192/302 (63%), Gaps = 5/302 (1%)
Query: 1 MY--KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K + + L + A + +SC VRFAD GWTDI TTA+T +LE LGYKT
Sbjct: 1 MKGCKSWLLVVSLCAPLAAQAAEPESCASVRFADVGWTDITVTTAVTRQVLES-LGYKTK 59
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ LL+VPVT+RSL N +D+F+G W P++ I Y E+G+++ + NL+GAKY LAV
Sbjct: 60 VNLLSVPVTYRSLANNDLDVFLGNWMPTMTNDIKQYAEKGTVETLRANLEGAKYTLAVPQ 119
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ G++S+ DIAK+ +LG KIYGIEPGN+GN+ MI+ N F L F+L+E+SE
Sbjct: 120 YVYDGGLRSFADIAKFSDKLGNKIYGIEPGNDGNRVAQSMIDKNAFELGKFKLVESSEAG 179
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLD 236
SQ++R R N VFL WEPHP+N+ + YL GG++ +G A++YT VR Y
Sbjct: 180 MLSQVQRAIRRNQWVVFLGWEPHPMNTRFQMKYLEGGDDFFGPNYGGATIYTNVRKGYAQ 239
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDG 296
+C N+ +LLKN+ F++ +EN++M +LN + + + L+ HP+ L WL GVTT DG
Sbjct: 240 ECANVGQLLKNLSFTLEMENKLMDAVLNENKKPEEAAKAWLKDHPEQLDAWLAGVTTRDG 299
Query: 297 QD 298
Q
Sbjct: 300 QP 301
>gi|37676169|ref|NP_936565.1| ABC-type proline/glycine betaine transport system, periplasmic
component [Vibrio vulnificus YJ016]
gi|37200710|dbj|BAC96535.1| ABC-type proline/glycine betaine transport system, periplasmic
component [Vibrio vulnificus YJ016]
Length = 312
Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats.
Identities = 133/310 (42%), Positives = 196/310 (63%), Gaps = 3/310 (0%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M + + S+ A+ C VRFAD GWTDI ATTA+TS +L+ +GY+T
Sbjct: 1 MSMTTKTLSIMALSAFSFTAAANQCQTVRFADVGWTDITATTAVTSQLLK-GMGYQTKTD 59
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
LL+VPVT+ S+ N +D+F+G W P++E IA Y + G ++ V NL+GAKY LAV
Sbjct: 60 LLSVPVTYSSMANGDVDVFLGNWMPTMEGDIAKYRDSGEVETVKANLEGAKYTLAVPKYV 119
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ G++S+ DI+KY + +IYGIEPGN+GN+ I MI+ N F LKGF L+E+SE
Sbjct: 120 YEQGVQSFADISKYADKFKNRIYGIEPGNDGNRLIQSMIDQNAFDLKGFSLVESSEAGMV 179
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKC 238
SQ+ R R N V+L W PHP+NS++ + YL GG++ +G A+VYT VR YL C
Sbjct: 180 SQVARAVRRNQWIVYLGWAPHPMNSNVEMVYLSGGDDFFGPNYGGANVYTNVREGYLSAC 239
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN+ +LL+N+ FS+ +EN++M+ ILN K+ L+ HP+ +K WL GV T +G+
Sbjct: 240 PNVGQLLQNLTFSLEMENQLMEAILNQKKKPAKAALNWLKQHPEQIKTWLEGVKTLEGKP 299
Query: 299 PSRQLERFMN 308
++ + ++N
Sbjct: 300 AAQAVIDYVN 309
>gi|326796544|ref|YP_004314364.1| choline ABC transporter periplasmic binding protein [Marinomonas
mediterranea MMB-1]
gi|326547308|gb|ADZ92528.1| choline ABC transporter, periplasmic binding protein [Marinomonas
mediterranea MMB-1]
Length = 310
Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats.
Identities = 129/309 (41%), Positives = 193/309 (62%), Gaps = 3/309 (0%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M+K + + S + C+ VRF+D GWTDI ATTA+TS +LE LGYKT +
Sbjct: 1 MFKKVTKTALAVALAGSASLSMADCSTVRFSDVGWTDITATTAVTSAVLE-GLGYKTKTQ 59
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
LL+VPVT+ SL N ID+F+G W P++ I PYLE G+++ + NL GAKY LAVN
Sbjct: 60 LLSVPVTYSSLANNDIDVFLGNWMPTMTADITPYLEAGTVEDLGPNLNGAKYTLAVNKAA 119
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ G+K + D+A+ +++ +IYGIEPGN+GN+ I DMI+ N F L F+++E+SE
Sbjct: 120 YDAGVKDFADLAENRRKFSGRIYGIEPGNDGNRLIQDMIDTNAFDLGDFQVVESSEAGML 179
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKC 238
SQ+ R R N VFL W PHP+N++ + YL GG++ FG +SV+T VR Y+ +C
Sbjct: 180 SQVSRSVRRNKWIVFLGWAPHPMNANFEMEYLSGGDDYFGPNFGGSSVHTNVRKGYVQEC 239
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
N+ LL N+KF++ +ENE+M IL+ + + + L+ +P L +WL GV+T G +
Sbjct: 240 SNVGALLTNLKFTLDMENEIMGSILDKGESPEAAATSWLKANPAALDSWLEGVSTLSGGE 299
Query: 299 PSRQLERFM 307
++ +
Sbjct: 300 GLPAVKSHL 308
>gi|326424430|ref|NP_763555.2| L-proline glycine betaine binding ABC transporter protein proX
[Vibrio vulnificus CMCP6]
gi|319999820|gb|AAO08545.2| L-proline glycine betaine binding ABC transporter protein proX
[Vibrio vulnificus CMCP6]
Length = 312
Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats.
Identities = 133/310 (42%), Positives = 195/310 (62%), Gaps = 3/310 (0%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M + + S+ A+ C VRFAD GWTDI ATTA+TS +L+ +GY T
Sbjct: 1 MSMTTKTLSIMALSAFSFTAAANQCQTVRFADVGWTDITATTAVTSQLLK-GMGYHTKTD 59
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
LL+VPVT+ S+ N +D+F+G W P++E IA Y + G ++ V NL+GAKY LAV
Sbjct: 60 LLSVPVTYSSMANGDVDVFLGNWMPTMEGDIAKYRDSGEVETVKANLEGAKYTLAVPKYV 119
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ G++S+ DI+KY + +IYGIEPGN+GN+ I MI+ N F LKGF L+E+SE
Sbjct: 120 YEQGVQSFADISKYADKFKNRIYGIEPGNDGNRLIQSMIDQNAFDLKGFSLVESSEAGMV 179
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKC 238
SQ+ R R N V+L W PHP+NS++ + YL GG++ +G A+VYT VR YL C
Sbjct: 180 SQVARAVRRNQWIVYLGWAPHPMNSNVEMVYLSGGDDFFGPNYGGANVYTNVREGYLSAC 239
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN+ +LL+N+ FS+ +EN++M+ ILN K+ L+ HP+ +K WL GV T +G+
Sbjct: 240 PNVGQLLQNLTFSLEMENQLMEAILNQKEKPAKAALNWLKQHPEQIKTWLEGVKTLEGKP 299
Query: 299 PSRQLERFMN 308
++ + ++N
Sbjct: 300 AAQAVIDYVN 309
>gi|320158302|ref|YP_004190680.1| L-proline glycine betaine binding ABC transporter protein ProX
[Vibrio vulnificus MO6-24/O]
gi|319933614|gb|ADV88477.1| L-proline glycine betaine binding ABC transporter protein ProX
[Vibrio vulnificus MO6-24/O]
Length = 312
Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats.
Identities = 133/310 (42%), Positives = 196/310 (63%), Gaps = 3/310 (0%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M + + S+ A+ C VRFAD GWTDI ATTA+TS +L+ +GY+T
Sbjct: 1 MSMTTKTLSIMALSAFSFTAAANQCQTVRFADVGWTDITATTAVTSQLLK-GMGYQTKTD 59
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
LL+VPVT+ S+ N +D+F+G W P++E IA Y + G ++ V NL+GAKY LAV
Sbjct: 60 LLSVPVTYSSMANGDVDVFLGNWMPTMEGDIAKYRDSGEVETVKANLEGAKYTLAVPKYV 119
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ G++S+ DI+KY + +IYGIEPGN+GN+ I MI+ N F LKGF L+E+SE
Sbjct: 120 YEQGVQSFADISKYADKFKNRIYGIEPGNDGNRLIQSMIDQNAFDLKGFSLVESSEAGMV 179
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKC 238
SQ+ R R N V+L W PHP+NS++ + YL GG++ +G A+VYT VR YL C
Sbjct: 180 SQVARAVRRNQWIVYLGWAPHPMNSNVEMVYLSGGDDFFGPNYGGANVYTNVREGYLSAC 239
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN+ +LL+N+ FS+ +EN++M+ ILN K+ L+ HP+ +K WL GV T +G+
Sbjct: 240 PNVGQLLQNLTFSLEMENQLMEAILNQKEKPAKAALNWLKQHPEQIKTWLEGVKTLEGKP 299
Query: 299 PSRQLERFMN 308
++ + ++N
Sbjct: 300 AAQAVIDYVN 309
>gi|313111692|ref|ZP_07797486.1| putative glycine betaine/L-proline ABC transporter, periplasmic
component [Pseudomonas aeruginosa 39016]
gi|310883988|gb|EFQ42582.1| putative glycine betaine/L-proline ABC transporter, periplasmic
component [Pseudomonas aeruginosa 39016]
Length = 312
Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats.
Identities = 134/302 (44%), Positives = 192/302 (63%), Gaps = 5/302 (1%)
Query: 1 MY--KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K + + L + A + +SC VRFAD GWTDI TTA+T +LE LGYKT
Sbjct: 1 MKGCKSWLLAVSLCAPLAAQAAEPESCASVRFADVGWTDITVTTAVTRQVLES-LGYKTK 59
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ LL+VPVT+RSL N +D+F+G W P++ I Y E+G+++ + NL+GAKY LAV
Sbjct: 60 VNLLSVPVTYRSLANNDLDVFLGNWMPTMTNDIKQYAEKGTVETLRANLEGAKYTLAVPQ 119
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ G++S+ DIAK+ +LG KIYGIEPGN+GN+ MI+ N F L F+L+E+SE
Sbjct: 120 YVYDGGLRSFADIAKFSDKLGNKIYGIEPGNDGNRVAQSMIDKNAFELGKFKLVESSEAG 179
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLD 236
SQ++R R N VFL WEPHP+N+ + YL GG++ +G A++YT VR Y
Sbjct: 180 MLSQVQRAIRRNQWVVFLGWEPHPMNTRFQMKYLEGGDDFFGPNYGGATIYTNVRKGYTQ 239
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDG 296
+C N+ +LLKN+ F++ +EN++M +LN + + + L+ HP+ L WL GVTT DG
Sbjct: 240 ECANVGQLLKNLSFTLEMENKLMDAVLNENKKPEEAAKAWLKDHPEQLDAWLAGVTTRDG 299
Query: 297 QD 298
Q
Sbjct: 300 QP 301
>gi|153833205|ref|ZP_01985872.1| ABC-type proline/glycine betaine transport system, periplasmic
component [Vibrio harveyi HY01]
gi|269959990|ref|ZP_06174367.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|148870476|gb|EDL69391.1| ABC-type proline/glycine betaine transport system, periplasmic
component [Vibrio harveyi HY01]
gi|269835289|gb|EEZ89371.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 312
Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats.
Identities = 138/310 (44%), Positives = 200/310 (64%), Gaps = 6/310 (1%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M KI + + +++ A+ C VRFAD GWTDI ATTA+TS +L+ LGYKT
Sbjct: 4 MTKIFSS---IALSAVATGAYANQCETVRFADVGWTDITATTAVTSELLK-GLGYKTKTD 59
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
LL+VPVT+ S+ N ID+F+G W P++E IA Y E G+++ V NL+GAKY LAV
Sbjct: 60 LLSVPVTYSSMANGDIDVFLGNWMPTMEGDIAKYREAGTVETVRANLEGAKYTLAVPKYV 119
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ G+KS+ D+AK+ + +IYGIEPGN+GN+ I DMI+++ F LK F L+E+SE
Sbjct: 120 YDAGVKSFADLAKHADKFKDRIYGIEPGNDGNRLIQDMIDSDAFGLKDFSLVESSEAGMV 179
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKC 238
SQ+ R R N V+L W PHP+NS++ + YL GG++ +G A+VYT VR DYL +C
Sbjct: 180 SQVSRAVRRNQWIVYLGWAPHPMNSNVEMEYLSGGDDFFGPNYGGANVYTNVRQDYLSEC 239
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
N+ +LLKN++FS+ +EN++M+ ILN KQ + L +P + WL GV T DG+D
Sbjct: 240 QNVGQLLKNLEFSLEMENQLMEAILNQKQKPAKAAQEWLNANPQQFEAWLEGVKTLDGKD 299
Query: 299 PSRQLERFMN 308
+ + ++
Sbjct: 300 AKQAITSYLK 309
>gi|90418328|ref|ZP_01226240.1| periplasmic substrate-binding protein ABC-type
glycine/betaine/proline transporter [Aurantimonas
manganoxydans SI85-9A1]
gi|90338000|gb|EAS51651.1| periplasmic substrate-binding protein ABC-type
glycine/betaine/proline transporter [Aurantimonas
manganoxydans SI85-9A1]
Length = 315
Score = 253 bits (645), Expect = 3e-65, Method: Composition-based stats.
Identities = 142/313 (45%), Positives = 206/313 (65%), Gaps = 7/313 (2%)
Query: 1 MY--KILAVCLFLTTF--SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
M ++ A + T F + + A++A+SC+ VRF+D GWTDI ATTA+T+ IL+ LGY
Sbjct: 1 MKLSRMFAAAMLGTAFIGTPALAQEAESCSTVRFSDVGWTDITATTAVTTEILK-GLGYD 59
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
T+ K+L+VPVTF S+KN+ ID+F+G W PS++ IAPYLE+GS++ V NL GAKY LAV
Sbjct: 60 TDTKVLSVPVTFASMKNEDIDVFLGNWMPSMQADIAPYLEDGSVEDVKTNLTGAKYTLAV 119
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
F G+KS+ DIAK+ +L KIYGIEPGN+GN+ ILDMI F L F ++E+SE
Sbjct: 120 PQYLFDEGLKSFADIAKFSDQLDGKIYGIEPGNDGNRLILDMIEKGAFDLGDFDIVESSE 179
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDY 234
SQ+ R R+ VFL W PHP+N + + YL GG++ FG A+V+T VR Y
Sbjct: 180 QGMLSQVARATRSEDAIVFLGWAPHPMNKNFELQYLAGGDDFFGPDFGGATVHTTVRKGY 239
Query: 235 LDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTF 294
L++CPN+ LL ++ FS+ +EN +M IL++ + + + L+ +PD + WL GV T
Sbjct: 240 LEECPNVGALLSDLTFSLEMENAVMGAILDDGEKPEAAAQAWLKANPDQIGTWLEGVKTK 299
Query: 295 DGQDPSRQLERFM 307
DG+D ++ ++
Sbjct: 300 DGEDGLPAVKAYL 312
>gi|312882312|ref|ZP_07742056.1| glycine betaine/L-proline ABC transporter glycine
betaine/L-proline-binding protein [Vibrio caribbenthicus
ATCC BAA-2122]
gi|309370025|gb|EFP97533.1| glycine betaine/L-proline ABC transporter glycine
betaine/L-proline-binding protein [Vibrio caribbenthicus
ATCC BAA-2122]
Length = 312
Score = 253 bits (645), Expect = 3e-65, Method: Composition-based stats.
Identities = 131/311 (42%), Positives = 200/311 (64%), Gaps = 3/311 (0%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M KI +++ +A+ C VRFAD GWTDI ATTA+TS +L+ +GY+T
Sbjct: 1 MLKIKRTIATSAILAVALNVNANQCDTVRFADVGWTDITATTAVTSELLK-GMGYQTETD 59
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
LL+VPVT+ S+ N ID+F+G W P++E IA Y +EG+++ V NL+GAKY LAV
Sbjct: 60 LLSVPVTYSSMANGDIDVFLGNWMPTMEADIAKYRDEGTVETVRANLEGAKYTLAVPKYV 119
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ G+K++ D+ K+ + +IYGIEPGN+GN+ I MI+ N F LK F+L+E+SE
Sbjct: 120 YDAGVKNFSDLVKHSDKFKGRIYGIEPGNDGNRLIQSMIDKNAFGLKDFKLVESSEAGMV 179
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKC 238
SQ+ R R N V+L W PHP+NS++ + YL GG++ +G A+VYT VRS+YL +C
Sbjct: 180 SQVSRAARRNQWIVYLGWAPHPMNSNVEMTYLSGGDDFFGPNYGGANVYTNVRSNYLSEC 239
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
N+ ++LKN++FS+ +ENE+M+ ILN + L +P ++ WL G+ T DG+D
Sbjct: 240 QNVGQMLKNLEFSLEMENELMEAILNQNMKPAKAAQQWLHNNPSQVEIWLKGIKTLDGKD 299
Query: 299 PSRQLERFMNN 309
++ + ++ +
Sbjct: 300 AAKAVSSYIKS 310
>gi|94498975|ref|ZP_01305513.1| ABC-type proline/glycine betaine transport system, periplasmic
component [Oceanobacter sp. RED65]
gi|94428607|gb|EAT13579.1| ABC-type proline/glycine betaine transport system, periplasmic
component [Oceanobacter sp. RED65]
Length = 300
Score = 253 bits (645), Expect = 3e-65, Method: Composition-based stats.
Identities = 129/299 (43%), Positives = 196/299 (65%), Gaps = 3/299 (1%)
Query: 11 LTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRS 70
+ S S A+ C VRF+D GWTDI ATTA+ S +LE +GY T +LL+VPVT++S
Sbjct: 1 MALMSASLTSQANQCDTVRFSDVGWTDITATTAIASTVLE-GMGYDTKTQLLSVPVTYKS 59
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD 130
L+N+ ID+F+G W P++E I Y E G+++ + +NL GAKY LAV + G+KS+ D
Sbjct: 60 LENEDIDVFLGNWMPTMEGDIKAYRERGTVETIHKNLSGAKYTLAVPKYVYDAGVKSFAD 119
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
IAKY + KIYGIEPGN+GN+ I MI+ N F L+ F ++E+SE SQ++R R +
Sbjct: 120 IAKYADKFDGKIYGIEPGNDGNRLIQSMIDQNAFGLEDFDVVESSEAGMLSQVKRATRRD 179
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGF--GEASVYTVVRSDYLDKCPNISRLLKNI 248
VFL WEPHP+N++ + YL GG++ G G A+V+T VR+ Y+++C N+ +LLKN+
Sbjct: 180 KWIVFLGWEPHPMNANFELAYLEGGDDFFGPNLGGANVFTNVRTGYVEECKNVGKLLKNL 239
Query: 249 KFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
F++ LEN++M IL++ + + + L+ +P +L +WL GV T DG+ ++ +
Sbjct: 240 TFTLELENQVMAAILDDGKKPKKAAKDWLKENPAVLNDWLEGVETKDGKPALPAVKAAL 298
>gi|254780342|ref|YP_003064755.1| substrate-binding region of ABC-type glycine betaine transport
system [Candidatus Liberibacter asiaticus str. psy62]
gi|254040019|gb|ACT56815.1| substrate-binding region of ABC-type glycine betaine transport
system [Candidatus Liberibacter asiaticus str. psy62]
Length = 309
Score = 253 bits (645), Expect = 3e-65, Method: Composition-based stats.
Identities = 309/309 (100%), Positives = 309/309 (100%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK
Sbjct: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG
Sbjct: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF
Sbjct: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN
Sbjct: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPS 300
ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPS
Sbjct: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPS 300
Query: 301 RQLERFMNN 309
RQLERFMNN
Sbjct: 301 RQLERFMNN 309
>gi|315178684|gb|ADT85598.1| ABC-type proline/glycine betaine transport system, periplasmic
component [Vibrio furnissii NCTC 11218]
Length = 309
Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats.
Identities = 131/305 (42%), Positives = 194/305 (63%), Gaps = 3/305 (0%)
Query: 7 VCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPV 66
+ F +S AD+C VRFAD GWTDI ATTA+T+ +L LGY+TNI LL+VPV
Sbjct: 4 LMTFTAATLLSLNAYADNCNTVRFADVGWTDITATTAVTTELL-HGLGYQTNIDLLSVPV 62
Query: 67 TFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIK 126
T+ S+ N ID+F+G W P++E IA Y + G+++ + NL+GAKY LAV + G+
Sbjct: 63 TYSSMANGDIDVFLGNWMPTMEGDIAKYRDAGTVETLRANLEGAKYTLAVPQYVYDAGVH 122
Query: 127 SYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRD 186
S+ D+A++ +IYGIEPGN+GN+ I MI+NN F L F L+E+SE SQ++R
Sbjct: 123 SFADLAQHADAFKHRIYGIEPGNDGNRLIQSMIDNNAFDLNTFDLVESSEAGMVSQVKRA 182
Query: 187 QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRL 244
R FL W PHP+NS++ + YL GG++ +G A+VYT VR Y+ +CPN+ +L
Sbjct: 183 VRRKQWIAFLGWAPHPMNSNVKMAYLSGGDDYFGPNYGGANVYTNVRQGYVSQCPNVGQL 242
Query: 245 LKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLE 304
L N+ F++ +EN +M+ ILN Q + LR HP++L WL VTT +G+ + ++
Sbjct: 243 LNNLSFNLEMENALMEAILNQGQQPSKAAKAWLREHPEVLSKWLSKVTTLNGKPAEQAIQ 302
Query: 305 RFMNN 309
++N+
Sbjct: 303 DYLNS 307
>gi|126667737|ref|ZP_01738705.1| putative glycine betaine-binding ABC transporter [Marinobacter sp.
ELB17]
gi|126627840|gb|EAZ98469.1| putative glycine betaine-binding ABC transporter [Marinobacter sp.
ELB17]
Length = 309
Score = 252 bits (644), Expect = 4e-65, Method: Composition-based stats.
Identities = 136/310 (43%), Positives = 198/310 (63%), Gaps = 3/310 (0%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K++ L + A C VRFAD GWTDI ATTA+ S +LE +GY++ K
Sbjct: 1 MKKLVLAFAGLAISGAAAAAPNTECQTVRFADVGWTDITATTALASEVLE-GMGYESKAK 59
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+L+VPV +RSL+NK ID+F+G W P++E + PYLE G ++ V NL+GAKY LAV
Sbjct: 60 VLSVPVAYRSLQNKDIDVFLGNWMPTMEADVRPYLESGDVETVITNLEGAKYTLAVPQYV 119
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ G+ S+ DIAK+ + +IYGIEPGN+GN+ I DMI + F L FRL+E+SE
Sbjct: 120 YDAGVTSFADIAKHADQFDDRIYGIEPGNDGNRLIQDMIGQDAFGLGEFRLVESSEAGML 179
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKC 238
SQ+ R R N VFL WEPHP+N++ ++ YL GG++ +G A+V+T VR +YL++C
Sbjct: 180 SQVGRAVRRNEWVVFLGWEPHPMNANHDMAYLNGGDDFFGANYGGATVHTNVRKNYLNEC 239
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN+ +LL N+ FS+++ENE+M ILN+ ++ + T L +P +L WL GVTT +G
Sbjct: 240 PNVGKLLTNMTFSLSMENEVMGAILNDGEEPRDAAHTWLANNPAVLDVWLKGVTTLNGDA 299
Query: 299 PSRQLERFMN 308
++ +
Sbjct: 300 ALPAVKASLK 309
>gi|156977391|ref|YP_001448297.1| glycine betaine/L-proline ABC transporter glycine
betaine/L-proline-binding [Vibrio harveyi ATCC BAA-1116]
gi|156528985|gb|ABU74070.1| hypothetical protein VIBHAR_06178 [Vibrio harveyi ATCC BAA-1116]
Length = 309
Score = 252 bits (643), Expect = 5e-65, Method: Composition-based stats.
Identities = 139/310 (44%), Positives = 200/310 (64%), Gaps = 6/310 (1%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M KI + + +++ A+ C VRFAD GWTDI ATTA+TS +L+ LGYKT
Sbjct: 1 MTKIFSS---IALSAVATGAYANQCETVRFADVGWTDITATTAVTSELLK-GLGYKTKTD 56
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
LL+VPVT+ S+ N ID+F+G W P++E IA Y E G+++ V NL+GAKY LAV
Sbjct: 57 LLSVPVTYSSMANGDIDVFLGNWMPTMEGDIAKYREAGTVETVRANLEGAKYTLAVPKYV 116
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ G+KS+ D+AK + +IYGIEPGN+GN+ I DMI+++ F LK F L+E+SE
Sbjct: 117 YDAGVKSFADLAKNADKFKDRIYGIEPGNDGNRLIQDMIDSDAFGLKDFSLVESSEAGMV 176
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKC 238
SQ+ R R N V+L W PHP+NS++ + YL GG++ +G A+VYT VR DYL +C
Sbjct: 177 SQVSRAVRRNQWIVYLGWAPHPMNSNVEMEYLSGGDDFFGPNYGGANVYTNVRQDYLSEC 236
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
N+ +LLKN++FS+ +EN++M+ ILN KQ + L +P L+ WL GV T DG+D
Sbjct: 237 QNVGQLLKNLEFSLEMENQLMEAILNQKQKPAKAAQEWLNANPQQLEAWLEGVKTLDGKD 296
Query: 299 PSRQLERFMN 308
+ + ++
Sbjct: 297 AKQAITSYLK 306
>gi|16264144|ref|NP_436936.1| putative glycine-betaine-binding protein [Sinorhizobium meliloti
1021]
gi|307300003|ref|ZP_07579788.1| choline ABC transporter, periplasmic binding protein [Sinorhizobium
meliloti BL225C]
gi|15140269|emb|CAC48796.1| ABC transporter, periplasmic solute-binding protein [Sinorhizobium
meliloti 1021]
gi|306904892|gb|EFN35475.1| choline ABC transporter, periplasmic binding protein [Sinorhizobium
meliloti BL225C]
Length = 312
Score = 251 bits (640), Expect = 1e-64, Method: Composition-based stats.
Identities = 131/312 (41%), Positives = 193/312 (61%), Gaps = 4/312 (1%)
Query: 1 MYKILAVCL-FLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+ +I A+ L T ++ A + +SC VRF+D GWTDI +TTA+ S ILE LGY
Sbjct: 2 LKQITAMTAGLLMTIGVAAAAEPESCKTVRFSDVGWTDITSTTAVASTILEA-LGYAPQS 60
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
KLL++PVT+ S+KNK ID+++G W PS+E P+LE+ SI+++ NL GAKY AV
Sbjct: 61 KLLSIPVTYASMKNKDIDVYLGDWQPSMEADRKPFLEDKSIEVIGPNLTGAKYTFAVPKY 120
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
G+K D+ K+ + G KIYGIEPGN GN+ ILDMIN F L G+ L+E+SE
Sbjct: 121 VADAGVKDISDLQKFPDKFGRKIYGIEPGNNGNRMILDMINKGDFGLTGWELVESSEQGM 180
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDK 237
+++ R +++ VFL W PHP+N+ I YL G + +G A +YT +R+ Y +
Sbjct: 181 LAEVERATKDDQWIVFLGWAPHPMNTRYQIDYLSGADAYFGPNYGGADIYTNIRAGYAQE 240
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQ 297
CPN++R + N++F++ +ENE+M ILN+ D + L+ HP+ + WL GVTTFDG
Sbjct: 241 CPNVARFVTNLRFTLEMENEIMNGILNDGNDPKDAAADWLKAHPEAVAPWLEGVTTFDGA 300
Query: 298 DPSRQLERFMNN 309
+E + +
Sbjct: 301 PAKEAVESALKS 312
>gi|307316644|ref|ZP_07596087.1| choline ABC transporter, periplasmic binding protein [Sinorhizobium
meliloti AK83]
gi|306897842|gb|EFN28585.1| choline ABC transporter, periplasmic binding protein [Sinorhizobium
meliloti AK83]
Length = 312
Score = 251 bits (640), Expect = 1e-64, Method: Composition-based stats.
Identities = 133/312 (42%), Positives = 194/312 (62%), Gaps = 4/312 (1%)
Query: 1 MYKILAVCL-FLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+ +I A+ LTT ++ A + +SC VRF+D GWTDI +TTA+ S ILE LGY
Sbjct: 2 LKQITAMTAGLLTTIGVATAAEPESCKTVRFSDVGWTDITSTTAVASTILEA-LGYAPQS 60
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
KLL++PVT+ S+KNK ID+++G W PS+E P+LEE SI+++ NL GAKY AV
Sbjct: 61 KLLSIPVTYASMKNKDIDVYLGDWQPSMEADRKPFLEEKSIEVIGPNLTGAKYTFAVPKY 120
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
G+K D+ K+ + G KIYGIEPGN GN+ ILDMIN F L G+ L+E+SE
Sbjct: 121 VADAGVKDISDLQKFPDKFGRKIYGIEPGNNGNRMILDMINKGDFGLTGWELVESSEQGM 180
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDK 237
+++ R +++ VFL W PHP+N+ I YL G + +G A +YT +R+ Y +
Sbjct: 181 LAEVERATKDDQWIVFLGWAPHPMNTRYQIDYLSGADAYFGPNYGGADIYTNIRAGYAQE 240
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQ 297
CPN++R + N++F++ +ENE+M ILN+ D + L+ HP+ + WL GVTTFDG
Sbjct: 241 CPNVARFVTNLRFTLEMENEIMNGILNDGNDPKDAAADWLKAHPEAVAPWLEGVTTFDGA 300
Query: 298 DPSRQLERFMNN 309
+E + +
Sbjct: 301 PAKEAVESALKS 312
>gi|91778493|ref|YP_553701.1| ABC proline/glycine betaine transporter, periplasmic ligand binding
protein [Burkholderia xenovorans LB400]
gi|91691153|gb|ABE34351.1| ABC proline/glycine betaine transporter, periplasmic ligand binding
protein [Burkholderia xenovorans LB400]
Length = 311
Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats.
Identities = 133/310 (42%), Positives = 195/310 (62%), Gaps = 5/310 (1%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M ++ A L + S +A + +C VRFAD GWTDIAATT + S +LE LGYK
Sbjct: 1 MKRLWAASLCALSVSSVFAAEPAACRDVRFADVGWTDIAATTGLASTVLE-GLGYKPTKT 59
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAVNDV 119
+ +VP+TF +K+K ID+F+GYW P+++ I P+ + G + ++ NL GAKY LAV D
Sbjct: 60 IASVPITFAGVKSKQIDVFLGYWSPTMDPMIDPFRKSGQLTVLPTPNLTGAKYTLAVPDY 119
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+ GIK++ DIAK +L KIYGIEPGN+GN I MI+ N++ L F+L+E+SE
Sbjct: 120 AYQSGIKTFSDIAKNYDKLDGKIYGIEPGNDGNALIKKMIDTNQYGLGKFKLVESSEAGM 179
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDK 237
++ R R P VFL WEPHP+N + I YL GG+++ +GEA V TV SDY +
Sbjct: 180 LVEVNRAIRAKKPIVFLGWEPHPMNVQMKIDYLSGGDDVFGPNYGEAKVLTVTPSDYSAR 239
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQ 297
CPN+++L+ N++F+ +EN +M I+ NK D R L+ +P +L WL GV T+DG+
Sbjct: 240 CPNVAKLVSNLQFTTDIENHVMLPIM-NKTDPNKAAREWLKANPAVLDKWLAGVKTYDGK 298
Query: 298 DPSRQLERFM 307
D ++ ++
Sbjct: 299 DGLPAVKAYV 308
>gi|239832459|ref|ZP_04680788.1| choline ABC transporter, periplasmic binding protein [Ochrobactrum
intermedium LMG 3301]
gi|239824726|gb|EEQ96294.1| choline ABC transporter, periplasmic binding protein [Ochrobactrum
intermedium LMG 3301]
Length = 315
Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats.
Identities = 136/306 (44%), Positives = 201/306 (65%), Gaps = 3/306 (0%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
+ L+ + + A + +SC+ VRF+D GWTDI +TTA+ + IL+ LGYKT+IK+L+
Sbjct: 9 LATGTAMLSAPANAVAAEPESCSTVRFSDVGWTDITSTTAVATEILK-GLGYKTDIKVLS 67
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
VPVT+ SL K ID+F+GYW PS+ + PYL++ +++ + NL GAKY LAV +
Sbjct: 68 VPVTYASLSKKDIDVFLGYWNPSMSADLQPYLDDKTVETLRTNLTGAKYTLAVPKYAYDE 127
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
G+K ++DIAK+K +LG KIYGIEPGN+GN+ ILDMIN + F LK F L E+SE +Q+
Sbjct: 128 GLKDFKDIAKFKDKLGGKIYGIEPGNDGNRLILDMINKDAFGLKSFELAESSEQGMLAQV 187
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF--GEASVYTVVRSDYLDKCPNI 241
R ++ P VFL+WEPHP+N I YL GG++ G G A V T VR+ Y +CPN+
Sbjct: 188 ARSIKSKDPVVFLAWEPHPMNKRFEIAYLTGGDDFFGPNLGGAKVETNVRTGYTQECPNV 247
Query: 242 SRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSR 301
+ L N++F + +ENE+M IL++ Q+ + L+ +P +L WL GVTT DG++
Sbjct: 248 GKFLTNLEFKLDIENEIMGKILDDGQEPSKAAQDWLKANPGVLDQWLAGVTTVDGKEGLP 307
Query: 302 QLERFM 307
++ +
Sbjct: 308 AVKAAL 313
>gi|28900966|ref|NP_800621.1| putative glycine betaine-binding ABC transporter [Vibrio
parahaemolyticus RIMD 2210633]
gi|153836699|ref|ZP_01989366.1| ABC-type proline/glycine betaine transport system, periplasmic
component [Vibrio parahaemolyticus AQ3810]
gi|260366178|ref|ZP_05778638.1| glycine betaine/L-proline ABC transporter glycine
betaine/L-proline-binding protein [Vibrio
parahaemolyticus K5030]
gi|260879820|ref|ZP_05892175.1| glycine betaine/L-proline ABC transporter glycine
betaine/L-proline-binding protein [Vibrio
parahaemolyticus AN-5034]
gi|260894494|ref|ZP_05902990.1| glycine/betaine/L-proline ABC transporter,
glycine/betaine/L-proline-binding protein [Vibrio
parahaemolyticus Peru-466]
gi|28809412|dbj|BAC62454.1| putative glycine betaine-binding ABC transporter [Vibrio
parahaemolyticus RIMD 2210633]
gi|149750048|gb|EDM60793.1| ABC-type proline/glycine betaine transport system, periplasmic
component [Vibrio parahaemolyticus AQ3810]
gi|308086528|gb|EFO36223.1| glycine/betaine/L-proline ABC transporter,
glycine/betaine/L-proline-binding protein [Vibrio
parahaemolyticus Peru-466]
gi|308092625|gb|EFO42320.1| glycine betaine/L-proline ABC transporter glycine
betaine/L-proline-binding protein [Vibrio
parahaemolyticus AN-5034]
gi|308114837|gb|EFO52377.1| glycine betaine/L-proline ABC transporter glycine
betaine/L-proline-binding protein [Vibrio
parahaemolyticus K5030]
Length = 312
Score = 250 bits (637), Expect = 2e-64, Method: Composition-based stats.
Identities = 135/310 (43%), Positives = 196/310 (63%), Gaps = 3/310 (0%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K+ + + S++ A+ C VRFAD GWTDI ATTA+T+ +L+ LGYKT
Sbjct: 1 MSKMTKILSTIALSSLATGAYANQCKTVRFADVGWTDITATTAVTTELLK-GLGYKTKTD 59
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
LL+VPVT+ S+ N IDIF+G W P++E IA Y + G+++ V NL GAKY LAV
Sbjct: 60 LLSVPVTYSSMANGDIDIFLGNWMPTMEGDIAKYRDAGTVETVKANLVGAKYTLAVPKYV 119
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ G++S+ D+ K+ + +IYGIEPGN+GN+ I MI++N F LK F L+E+SE
Sbjct: 120 YDAGVRSFADLEKHADKFKDRIYGIEPGNDGNRLIQSMIDSNAFGLKDFSLVESSEAGMV 179
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKC 238
SQ+ R R N V+L W PHP+N+++ + YL GG++ +G A+VYT VR +YL +C
Sbjct: 180 SQVSRAVRRNQWIVYLGWAPHPMNNNVEMEYLAGGDDFFGPNYGGANVYTNVRKNYLAEC 239
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN +LLKN++FS+ +ENE+M+ ILN KQ + L + D ++ WL V T DGQD
Sbjct: 240 PNAGQLLKNLEFSLEMENELMEAILNQKQKPSKAAQAWLNANADKIEAWLKDVKTVDGQD 299
Query: 299 PSRQLERFMN 308
+ ++
Sbjct: 300 AKAAISAYLK 309
>gi|296156326|ref|ZP_06839165.1| choline ABC transporter, periplasmic binding protein [Burkholderia
sp. Ch1-1]
gi|295893832|gb|EFG73611.1| choline ABC transporter, periplasmic binding protein [Burkholderia
sp. Ch1-1]
Length = 311
Score = 250 bits (637), Expect = 3e-64, Method: Composition-based stats.
Identities = 133/310 (42%), Positives = 195/310 (62%), Gaps = 5/310 (1%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M ++ A L + S +A + +C VRFAD GWTDIAATT + S +LE LGYK
Sbjct: 1 MKRLWAASLCALSVSSVFAAEPAACRDVRFADVGWTDIAATTGLASTVLE-GLGYKPTKT 59
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAVNDV 119
+ +VP+TF +K+K ID+F+GYW P+++ I P+ + G + ++ NL GAKY LAV D
Sbjct: 60 IASVPITFAGVKSKQIDVFLGYWTPTMDPMIDPFRKSGQLTVLPTPNLTGAKYTLAVPDY 119
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+ GIK++ DIAK +L KIYGIEPGN+GN I MI+ N++ L F+L+E+SE
Sbjct: 120 AYQSGIKTFADIAKNYDKLDGKIYGIEPGNDGNALIKKMIDTNQYGLGKFKLVESSEAGM 179
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDK 237
++ R R P VFL WEPHP+N + I YL GG+++ +GEA V TV SDY +
Sbjct: 180 LVEVNRAIRAKKPIVFLGWEPHPMNVQMKIDYLSGGDDVFGPNYGEAKVLTVTPSDYSAR 239
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQ 297
CPN+++L+ N++F+ +EN +M I+ NK D R L+ +P +L WL GV T+DG+
Sbjct: 240 CPNVAKLVSNLQFTTDIENHVMLPIM-NKTDPNKAAREWLKANPAVLDRWLAGVKTYDGK 298
Query: 298 DPSRQLERFM 307
D ++ ++
Sbjct: 299 DGLPAVKAYV 308
>gi|91224753|ref|ZP_01260013.1| putative glycine betaine-binding ABC transporter [Vibrio
alginolyticus 12G01]
gi|91190299|gb|EAS76568.1| putative glycine betaine-binding ABC transporter [Vibrio
alginolyticus 12G01]
Length = 312
Score = 249 bits (636), Expect = 3e-64, Method: Composition-based stats.
Identities = 133/310 (42%), Positives = 196/310 (63%), Gaps = 3/310 (0%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K+ + +++ A+ C VRFAD GWTDI ATTA+TS +L+ LGYKT
Sbjct: 1 MSKMTKSFSTIALSTLATGAYANQCETVRFADVGWTDITATTAVTSELLK-GLGYKTKTD 59
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
LL+VPVT+ S+ N IDIF+G W P++E IA Y + G+++ V NL GAKY LAV
Sbjct: 60 LLSVPVTYSSMANGDIDIFLGNWMPTMEGDIAKYRDAGTVETVRANLVGAKYTLAVPKYV 119
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ G+ ++ D+ K+ + +IYGIEPGN+GN+ I MI++N F LK F L+E+SE
Sbjct: 120 YDAGVTNFADLVKHADKFKDRIYGIEPGNDGNRLIQSMIDSNAFGLKDFSLVESSEAGMV 179
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKC 238
SQ+ R R N V+L W PHP+NS++ + YL GG++ +G A+VYT VR +YL +C
Sbjct: 180 SQVSRAARRNQWIVYLGWAPHPMNSNVEMEYLAGGDDFFGPNYGGANVYTNVRKNYLAEC 239
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN+ +L+KN++F++ +ENE+M+ ILN KQ + L + + ++ WL GV T DGQD
Sbjct: 240 PNVGQLVKNLEFNLEMENELMEAILNQKQKPSKAAQAWLNANQEQIEAWLEGVKTVDGQD 299
Query: 299 PSRQLERFMN 308
+ ++
Sbjct: 300 ALTAITNYLK 309
>gi|269964380|ref|ZP_06178622.1| putative glycine betaine-binding ABC transporter [Vibrio
alginolyticus 40B]
gi|269830877|gb|EEZ85094.1| putative glycine betaine-binding ABC transporter [Vibrio
alginolyticus 40B]
Length = 312
Score = 249 bits (636), Expect = 3e-64, Method: Composition-based stats.
Identities = 133/310 (42%), Positives = 197/310 (63%), Gaps = 3/310 (0%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K+ + + +++ A+ C VRFAD GWTDI ATTA+TS +L+ LGYKT
Sbjct: 1 MSKMTKIFSTIALSTLATGAYANQCETVRFADVGWTDITATTAVTSELLK-GLGYKTKTD 59
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
LL+VPVT+ S+ N IDIF+G W P++E IA Y + G+++ V NL GAKY LAV
Sbjct: 60 LLSVPVTYSSMANGDIDIFLGNWMPTMEGDIAKYRDAGTVETVRANLVGAKYTLAVPKYV 119
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ G+ ++ D+ K+ + +IYGIEPGN+GN+ I MI++N F LK F L+E+SE
Sbjct: 120 YDAGVTNFADLVKHADKFKDRIYGIEPGNDGNRLIQSMIDSNAFGLKDFSLVESSEAGMV 179
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKC 238
SQ+ R R N V+L W PHP+NS++ + YL GG++ +G A+VYT VR +YL +C
Sbjct: 180 SQVSRAARRNQWIVYLGWAPHPMNSNVEMEYLAGGDDFFGPNYGGANVYTNVRKNYLAEC 239
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN+ +L+KN++F++ +ENE+M+ ILN KQ + L + + ++ WL GV T DGQD
Sbjct: 240 PNVGQLVKNLEFNLEMENELMEAILNQKQKPSKAAQAWLNANQEQIEAWLEGVKTVDGQD 299
Query: 299 PSRQLERFMN 308
+ ++
Sbjct: 300 ALTAITNYLK 309
>gi|323496151|ref|ZP_08101210.1| glycine betaine/L-proline ABC transporter glycine
betaine/L-proline-binding protein [Vibrio sinaloensis
DSM 21326]
gi|323318789|gb|EGA71741.1| glycine betaine/L-proline ABC transporter glycine
betaine/L-proline-binding protein [Vibrio sinaloensis
DSM 21326]
Length = 312
Score = 249 bits (635), Expect = 4e-64, Method: Composition-based stats.
Identities = 133/311 (42%), Positives = 199/311 (63%), Gaps = 3/311 (0%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M L ++++ A+ C VRFAD GWTDI ATTA+T+ +L+ LGY+T
Sbjct: 1 MSMTTKTLSTLALSTLAFNAYANQCETVRFADVGWTDITATTAVTTELLK-GLGYQTKTD 59
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
LL+VPVT+ S+ N IDIF+G W P++E IA Y E GS++ V NL+GAKY LAV
Sbjct: 60 LLSVPVTYSSMANGDIDIFLGNWMPTMEGDIAKYREAGSVETVRANLEGAKYTLAVPKYV 119
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ G+KS+ D+AK+ + +IYGIEPGN+GN+ I MI++N F LK F L+E+SE
Sbjct: 120 YDAGVKSFADLAKHADKFRDRIYGIEPGNDGNRLIQSMIDDNAFGLKDFSLVESSEAGMV 179
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKC 238
SQ+ R R N V+L W PHP+NS++ + YL GG++ +G A+VYT VR +YL +C
Sbjct: 180 SQVSRAVRRNQWIVYLGWAPHPMNSNVEMEYLAGGDDFFGPNYGGANVYTNVRQNYLSEC 239
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
N+ +LLKN++FS+ +EN++M+ ILN + + L+ +P ++ WL GV T G+
Sbjct: 240 QNVGQLLKNLEFSLEMENQLMESILNQNVKPEKAAQQWLKANPQQVELWLEGVKTLQGES 299
Query: 299 PSRQLERFMNN 309
++ + ++N+
Sbjct: 300 ATKAVTSYINS 310
>gi|152997517|ref|YP_001342352.1| glycine betaine ABC transporter substrate-binding protein
[Marinomonas sp. MWYL1]
gi|150838441|gb|ABR72417.1| Substrate-binding region of ABC-type glycine betaine transport
system [Marinomonas sp. MWYL1]
Length = 311
Score = 249 bits (635), Expect = 4e-64, Method: Composition-based stats.
Identities = 129/303 (42%), Positives = 194/303 (64%), Gaps = 3/303 (0%)
Query: 7 VCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPV 66
+ ++ IS A C+ VRF+D GWTDI ATTA+TS I+E LGYK+ +LL+VPV
Sbjct: 8 TAIAISVAGISGLTLAADCSTVRFSDVGWTDITATTAVTSEIVE-GLGYKSKTQLLSVPV 66
Query: 67 TFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIK 126
T+ SL N ID+F+G W P+++ I PYL+ G+++ + NL GAKY LAV+ F G+
Sbjct: 67 TYTSLANGDIDVFLGNWMPTMQADIEPYLKAGTVEDLGANLVGAKYTLAVSKDAFDAGVT 126
Query: 127 SYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRD 186
+ DIAK++KE +IYGIEPGN+GN+ I +MI+ N F L F+L+E+SE SQ+ R+
Sbjct: 127 DFSDIAKHRKEFSGRIYGIEPGNDGNRIIQNMIDTNAFDLGNFQLVESSEAGMLSQVSRN 186
Query: 187 QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRL 244
R N FL W PHP+N++ + YL GG++ +G A V+T VR Y+ +CPN+ +L
Sbjct: 187 TRRNKWIAFLGWAPHPMNANFKMEYLSGGDDYFGPNYGGADVHTNVRKGYIQQCPNVGKL 246
Query: 245 LKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLE 304
+ N+KFS+ +EN++M IL+ + + L+ +P++L WL GVTT G + ++
Sbjct: 247 IANLKFSLPMENQIMGAILDEGKKPNIAAKEWLKANPEVLDAWLKGVTTQSGDNGLSAVK 306
Query: 305 RFM 307
+
Sbjct: 307 SHL 309
>gi|328470868|gb|EGF41779.1| putative glycine betaine-binding ABC transporter [Vibrio
parahaemolyticus 10329]
Length = 312
Score = 248 bits (634), Expect = 5e-64, Method: Composition-based stats.
Identities = 137/311 (44%), Positives = 199/311 (63%), Gaps = 3/311 (0%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K+ + + S++ A+ C VRFAD GWTDI ATTA+T+ +L+ LGYKT
Sbjct: 1 MSKMTKILSTIALSSVATGAYANQCETVRFADVGWTDITATTAVTTELLK-GLGYKTKTD 59
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
LL+VPVT+ S+ N IDIF+G W P++E IA Y + G+++ V NL GAKY LAV
Sbjct: 60 LLSVPVTYSSMANGDIDIFLGNWMPTMEGDIAKYRDAGTVETVKANLVGAKYTLAVPKYV 119
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ G+KS+ D+ K+ + +IYGIEPGN+GN+ I MI++N F LK F L+E+SE
Sbjct: 120 YDAGVKSFADLEKHADKFKDRIYGIEPGNDGNRLIQSMIDSNAFGLKDFSLVESSEAGMV 179
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKC 238
SQ+ R R N V+L W PHP+NS++ + YL GG++ +G A+VYT VR +YL +C
Sbjct: 180 SQVSRAVRRNQWIVYLGWAPHPMNSNVEMEYLSGGDDFFGPNYGGANVYTNVRKNYLAEC 239
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN+ +L+KN++FS+ +ENE+M+ ILN KQ + L + D ++ WL V T DGQD
Sbjct: 240 PNVGQLVKNLEFSLEMENELMEAILNQKQKPSKAAQAWLTANADKIEAWLKDVKTVDGQD 299
Query: 299 PSRQLERFMNN 309
+ R++ +
Sbjct: 300 AQSAIARYLKD 310
>gi|254227615|ref|ZP_04921046.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein, putative [Vibrio sp. Ex25]
gi|262395663|ref|YP_003287516.1| L-proline glycine betaine binding ABC transporter protein proX
[Vibrio sp. Ex25]
gi|151939657|gb|EDN58484.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein, putative [Vibrio sp. Ex25]
gi|262339257|gb|ACY53051.1| L-proline glycine betaine binding ABC transporter protein proX
[Vibrio sp. Ex25]
Length = 312
Score = 248 bits (633), Expect = 7e-64, Method: Composition-based stats.
Identities = 133/310 (42%), Positives = 197/310 (63%), Gaps = 3/310 (0%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K+ + + +++ A+ C VRFAD GWTDI ATTA+TS +L+ LGYKT
Sbjct: 1 MSKMTKIFSTIALSTLATGAYANQCETVRFADVGWTDITATTAVTSELLK-GLGYKTKTD 59
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
LL+VPVT+ S+ N IDIF+G W P++E IA Y + G+++ V NL GAKY LAV
Sbjct: 60 LLSVPVTYSSMANGDIDIFLGNWMPTMEGDIAKYRDAGTVETVRANLVGAKYTLAVPKYV 119
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ G+ ++ D+ K+ + +IYGIEPGN+GN+ I MI++N F LK F L+E+SE
Sbjct: 120 YDAGVTNFADLVKHADKFKDRIYGIEPGNDGNRLIQSMIDSNAFGLKDFSLVESSEAGMV 179
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKC 238
SQ+ R R N V+L W PHP+NS++ + YL GG++ +G A+VYT VR +YL +C
Sbjct: 180 SQVSRAARRNQWIVYLGWAPHPMNSNVEMEYLAGGDDFFGPNYGGANVYTNVRKNYLAEC 239
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN+ +L+KN++F++ +ENE+M+ ILN KQ + L + + ++ WL GV T DGQD
Sbjct: 240 PNVGQLVKNLEFNLEMENELMEAILNQKQKPSKAAQAWLNANQEQIEAWLEGVKTVDGQD 299
Query: 299 PSRQLERFMN 308
+ ++
Sbjct: 300 AVTAITNYLK 309
>gi|87119553|ref|ZP_01075450.1| putative glycine betaine-binding ABC transporter [Marinomonas sp.
MED121]
gi|86165029|gb|EAQ66297.1| putative glycine betaine-binding ABC transporter [Marinomonas sp.
MED121]
Length = 311
Score = 248 bits (633), Expect = 8e-64, Method: Composition-based stats.
Identities = 133/307 (43%), Positives = 197/307 (64%), Gaps = 3/307 (0%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL 62
K+ L + +S A A +C+ VRF+D GWTDI ATTA+TS +L + LGY T +LL
Sbjct: 4 KVSKSLLVTSAVVVSSASLAANCSTVRFSDVGWTDITATTAVTSEVL-QGLGYNTKTQLL 62
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
+VPVT+ SL N ID+F+G W P++E IAPYL+ G+++ + NL+GAKY LAV+ F
Sbjct: 63 SVPVTYTSLANGDIDVFLGNWMPTMEADIAPYLKAGTVEDLRANLKGAKYTLAVSKNAFD 122
Query: 123 LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
G+K++ D+AK+KK+ +IYGIEPGN+GN+ I DMIN+N F L F+L+E+SE SQ
Sbjct: 123 AGVKTFADLAKFKKKFNGRIYGIEPGNDGNRIIQDMINSNAFELSDFQLVESSEAGMLSQ 182
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPN 240
+ R+ R + FL W PHP+N++ + YL GG++ +G A V+T VR Y +CPN
Sbjct: 183 VARNTRRDKWIAFLGWAPHPMNANFEMEYLAGGDDYFGPNYGGADVHTNVRKSYTQECPN 242
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPS 300
+ + L N++FS+A+ENE+M IL++ + + L +P L WL GV T G +
Sbjct: 243 VGKFLNNLEFSLAMENEVMGAILDDGKKPSLAAKEWLTNNPGTLDAWLEGVNTQSGGNGL 302
Query: 301 RQLERFM 307
++ +
Sbjct: 303 SAVKSHL 309
>gi|306843074|ref|ZP_07475697.1| choline ABC transporter, periplasmic binding protein [Brucella sp.
BO2]
gi|306286753|gb|EFM58303.1| choline ABC transporter, periplasmic binding protein [Brucella sp.
BO2]
Length = 326
Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats.
Identities = 135/314 (42%), Positives = 198/314 (63%), Gaps = 8/314 (2%)
Query: 1 MYKILAVCLFLTTFSISY-----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M+ + + T +S A + SC+ VRF+D GWTDI +TTA+ + IL+ LGY
Sbjct: 12 MFTLTLGGFAMGTAMLSTPEIGLAAEPASCSTVRFSDVGWTDITSTTAVATEILK-GLGY 70
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
T+IK+L+VPVT+ SL K ID+F+GYW PS+ + PYL+ +++ + NL GAKY LA
Sbjct: 71 TTDIKVLSVPVTYASLAKKDIDVFLGYWNPSMSADLQPYLDNKTVETLRTNLTGAKYTLA 130
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
V F G+K ++DIAK+K +L KIYGIEPGN+GN+ IL MIN N F LK F L E+S
Sbjct: 131 VPQFVFDEGLKDFKDIAKFKDKLSGKIYGIEPGNDGNRLILSMINKNAFGLKSFELAESS 190
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF--GEASVYTVVRSD 233
E +Q+ R ++ P VFL+WEPHP+N I YL GG++ G G A V T VR+
Sbjct: 191 EQGMLAQVARSIKSKEPIVFLAWEPHPMNKRFKIAYLTGGDDFFGPNLGGAKVETNVRTG 250
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
Y +CPN+ + L N++F++ +EN++M IL++ ++ L+ +P +L WL GVTT
Sbjct: 251 YTQECPNVGKFLTNLEFNLDMENDIMGKILDDGEEPAKAATEWLKANPGVLNQWLAGVTT 310
Query: 294 FDGQDPSRQLERFM 307
DG++ ++ +
Sbjct: 311 VDGKEGLPAVKSAL 324
>gi|220919716|ref|YP_002495019.1| choline ABC transporter, periplasmic binding protein
[Methylobacterium nodulans ORS 2060]
gi|219952136|gb|ACL62527.1| choline ABC transporter, periplasmic binding protein
[Methylobacterium nodulans ORS 2060]
Length = 312
Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats.
Identities = 129/310 (41%), Positives = 187/310 (60%), Gaps = 4/310 (1%)
Query: 1 MYKILAVCLF-LTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M L LF ++ F+ A D +C VRFAD GWTDI ATTA+ S IL LGY
Sbjct: 1 MRVFLVRVLFGVSLFATPAAADPAACKTVRFADVGWTDITATTALASRIL-TGLGYTPKT 59
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
++L+VPVT+ SL +K ID+F+G W P++E PYL++ I+++ NL GAKY AV
Sbjct: 60 QILSVPVTYASLGSKNIDVFLGNWMPTMEADRKPYLDKNEIEVLGPNLTGAKYTFAVPAY 119
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+ G+KS+ DI+K ++L KIYGIEPGN+GN+ IL +I NN ++L F L+E+SE
Sbjct: 120 LYEAGLKSFSDISKSHRQLKGKIYGIEPGNDGNRMILGIIKNNTYNLGNFDLVESSEQGM 179
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDK 237
+Q+ R + P +FL WEPHP+N+ I YL GG++ +G A ++T +R+ Y+ +
Sbjct: 180 LAQVERAIQRKEPILFLGWEPHPMNTKFPIRYLSGGDDTFGPNYGGAEIFTNLRAGYVAQ 239
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQ 297
CPN+ RL KN+ F + EN +M IL + D + L+ +P + WL GV TFDG+
Sbjct: 240 CPNLGRLFKNLTFDLPTENVVMGSILFDGLDPEKAADKWLKANPGAWQRWLDGVETFDGK 299
Query: 298 DPSRQLERFM 307
+
Sbjct: 300 PGLPAARASL 309
>gi|15966152|ref|NP_386505.1| putative glycine betaine-binding ABC transporter protein
[Sinorhizobium meliloti 1021]
gi|307308503|ref|ZP_07588205.1| choline ABC transporter, periplasmic binding protein [Sinorhizobium
meliloti BL225C]
gi|307317281|ref|ZP_07596721.1| choline ABC transporter, periplasmic binding protein [Sinorhizobium
meliloti AK83]
gi|15075422|emb|CAC46978.1| Putative choline ABC transporter, periplasmic solute-binding
component [Sinorhizobium meliloti 1021]
gi|306896870|gb|EFN27616.1| choline ABC transporter, periplasmic binding protein [Sinorhizobium
meliloti AK83]
gi|306900903|gb|EFN31512.1| choline ABC transporter, periplasmic binding protein [Sinorhizobium
meliloti BL225C]
Length = 318
Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats.
Identities = 144/304 (47%), Positives = 208/304 (68%), Gaps = 3/304 (0%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP 65
AVC+ T ++A + +SC VRF+D GWTDI ATTA + ILE LGY+T++K+L+VP
Sbjct: 14 AVCMATLTAGSAFAAEPESCGTVRFSDVGWTDITATTATATTILEA-LGYETDVKVLSVP 72
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
VT+ SLKNK ID+F+G W P++E IAPY E+ S++ V ENL GAKY LA N G LGI
Sbjct: 73 VTYTSLKNKDIDVFLGNWMPTMEADIAPYREDKSVETVRENLAGAKYTLATNAKGAELGI 132
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
K ++DIA +K EL KIYGIEPGN+GN+ I+DM+ F LKGF ++E+SE +Q+ R
Sbjct: 133 KDFKDIAAHKDELDGKIYGIEPGNDGNRLIIDMVEKGTFDLKGFEVVESSEQGMLAQVAR 192
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISR 243
+++ P VFL WEPHP+N++ + YL GG+++ +G A+V+T VR+ Y +CPN+ +
Sbjct: 193 AEKSGDPIVFLGWEPHPMNANFKLTYLSGGDDVFGPNYGGATVHTNVRAGYTTECPNVGK 252
Query: 244 LLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQL 303
LL+N+ FS+ +ENE+M ILN+ +D + L+ +P ++ WL GV T DG D +
Sbjct: 253 LLQNLSFSLQMENEIMGKILNDGEDPEKAAAAWLKDNPQSIEPWLSGVATKDGGDGLAAV 312
Query: 304 ERFM 307
+ +
Sbjct: 313 KAAL 316
>gi|118589796|ref|ZP_01547201.1| putative glycine betaine-binding abc transporter protein [Stappia
aggregata IAM 12614]
gi|118437882|gb|EAV44518.1| putative glycine betaine-binding abc transporter protein [Stappia
aggregata IAM 12614]
Length = 314
Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats.
Identities = 144/304 (47%), Positives = 207/304 (68%), Gaps = 3/304 (0%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP 65
+ L L + A + +SC VRF+D GWTDI ATTA TSV+LE LGYK ++KLL+VP
Sbjct: 10 GLALGLMFTGTALANEPESCQTVRFSDVGWTDITATTAATSVVLEA-LGYKPDVKLLSVP 68
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
VT+ SLKNK ID+F+G W P++E I Y E+GS++ V NL+GAKY LAV + + G+
Sbjct: 69 VTYASLKNKDIDVFLGNWMPTMEGDIKNYREDGSVETVRANLEGAKYTLAVPEYTYEKGL 128
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
KS+ DIAK+K +L KIYGIEPGN+GN+ I+ MI+ N F L+GF ++E+SE +Q+ R
Sbjct: 129 KSFDDIAKFKDDLDGKIYGIEPGNDGNRLIIGMIDQNLFGLEGFEVVESSEQGMLAQVAR 188
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISR 243
R + VFL WEPHP+N++ + YL GG+++ +G A+VYT VR+ Y+ +CPN+ +
Sbjct: 189 ANRRDADIVFLGWEPHPMNANFKMKYLEGGDDVFGPDYGGATVYTNVRAGYVKECPNVGK 248
Query: 244 LLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQL 303
LL+N++FS+ +ENE+M IL + +D L+ HP +NWL+GV TFDG D +
Sbjct: 249 LLENLEFSLPMENEIMGKILIDGEDPNKAAAAWLKEHPATFENWLVGVKTFDGGDSFAAV 308
Query: 304 ERFM 307
+ +
Sbjct: 309 KSAL 312
>gi|330448147|ref|ZP_08311795.1| putative choline ABC transporter, periplasmic solute-binding
component [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328492338|dbj|GAA06292.1| putative choline ABC transporter, periplasmic solute-binding
component [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 311
Score = 247 bits (629), Expect = 2e-63, Method: Composition-based stats.
Identities = 134/309 (43%), Positives = 195/309 (63%), Gaps = 6/309 (1%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
K L L L S+++ A+ C VRFAD GWTDI ATTA+TS +L+ +GY T L
Sbjct: 5 KKTL---LALALSSVTFNSYANQCDTVRFADVGWTDITATTAVTSELLK-GMGYNTKTDL 60
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
L+VPVT+ S+ N ID+F+G W P++E IA Y E +++ V NL+GAKY LAV +
Sbjct: 61 LSVPVTYSSMANGDIDVFLGNWMPTMEGDIAKYREAKTVETVKANLEGAKYTLAVPKYVY 120
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
G+KS+ D+AK+ + +IYGIEPGN+GN+ I MI+ N F LK F L+E+SE S
Sbjct: 121 DAGVKSFADLAKHADKFKGRIYGIEPGNDGNRLIQSMIDTNAFGLKDFSLVESSEAGMVS 180
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCP 239
Q+ R R + V+L W PHP+NS++ + YL GG++ +G A+VYT VRS+YL +CP
Sbjct: 181 QVSRSVRRDQWIVYLGWAPHPMNSNVEMEYLAGGDDFFGPNYGGANVYTNVRSNYLTECP 240
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDP 299
N+ +LLKN+ FS+ +EN +M+ ILN K + R L +P ++ WL V T +G+
Sbjct: 241 NVGQLLKNLSFSLEMENSLMEAILNQKVQPEKAARQWLSENPQQVEAWLKDVKTREGKVA 300
Query: 300 SRQLERFMN 308
+ + ++
Sbjct: 301 TTAVLDYLK 309
>gi|265984616|ref|ZP_06097351.1| ABC-type proline/glycine betaine transport system [Brucella sp.
83/13]
gi|264663208|gb|EEZ33469.1| ABC-type proline/glycine betaine transport system [Brucella sp.
83/13]
Length = 326
Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats.
Identities = 136/314 (43%), Positives = 199/314 (63%), Gaps = 8/314 (2%)
Query: 1 MYKILAVCLFLTTFSISY-----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M+ + + T +S A + SC+ VRF+D GWTDI +TTA+ + IL+ LGY
Sbjct: 12 MFTLALGGFAMGTAMLSTPEIGLAAEPASCSTVRFSDVGWTDITSTTAVATEILK-GLGY 70
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
T+IK+L+VPVT+ SL K ID+F+GYW PS+ + PYL+ +++ + NL GAKY LA
Sbjct: 71 TTDIKVLSVPVTYASLAKKDIDVFLGYWNPSMSADLQPYLDNKTVETLRTNLTGAKYTLA 130
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
V F G+K ++DIAK+K +LG KIYGIEPGN+GN+ IL MIN N F LK F L E+S
Sbjct: 131 VPQFVFDEGLKDFKDIAKFKDKLGGKIYGIEPGNDGNRLILSMINKNAFGLKSFELAESS 190
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF--GEASVYTVVRSD 233
E +Q+ R ++ P VFL+WEPHP+N I YL GG++ G G A V T VR+
Sbjct: 191 EQGMLAQVARSIKSKEPIVFLAWEPHPMNKRFKIAYLTGGDDFFGPNLGGAKVETNVRTG 250
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
Y +CPN+ + L N++F++ +EN++M IL++ ++ L+ +P +L WL GVTT
Sbjct: 251 YTQECPNVGKFLTNLEFNLDMENDIMGKILDDGEEPAKAATEWLKANPGVLNQWLAGVTT 310
Query: 294 FDGQDPSRQLERFM 307
DG++ ++ +
Sbjct: 311 VDGKEGLPAVKSAL 324
>gi|89076526|ref|ZP_01162837.1| putative glycine betaine-binding ABC transporter [Photobacterium
sp. SKA34]
gi|89047802|gb|EAR53399.1| putative glycine betaine-binding ABC transporter [Photobacterium
sp. SKA34]
Length = 311
Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats.
Identities = 134/309 (43%), Positives = 195/309 (63%), Gaps = 6/309 (1%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
K L L L S+++ A+ C VRFAD GWTDI ATTA+TS +L+ +GY T L
Sbjct: 5 KKTL---LALALSSVAFNSYANQCDTVRFADVGWTDITATTAVTSELLK-GMGYSTKTDL 60
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
L+VPVT+ S+ N ID+F+G W P++E IA Y E +++ V NL+GAKY LAV +
Sbjct: 61 LSVPVTYSSMANGDIDVFLGNWMPTMEGDIAKYREAKTVETVKANLEGAKYTLAVPKYVY 120
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
G+KS+ D+AK+ + +IYGIEPGN+GN+ I MI+ N F LK F L+E+SE S
Sbjct: 121 DAGVKSFADLAKHADKFKGRIYGIEPGNDGNRLIQSMIDTNAFGLKDFSLVESSEAGMVS 180
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCP 239
Q+ R R + V+L W PHP+NS++ + YL GG++ +G A+VYT VRS+YL +CP
Sbjct: 181 QVSRSVRRDQWIVYLGWAPHPMNSNVEMEYLAGGDDFFGPNYGGANVYTNVRSNYLTECP 240
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDP 299
N+ +LLKN+ FS+ +EN +M+ ILN K + R L +P ++ WL V T +G+
Sbjct: 241 NVGQLLKNLSFSLEMENSLMEAILNQKVQPEKAARQWLSENPQQVEAWLKDVKTREGKVA 300
Query: 300 SRQLERFMN 308
+ + ++
Sbjct: 301 TTAVLDYLK 309
>gi|17986724|ref|NP_539358.1| glycine betaine/L-proline-binding protein PROX [Brucella melitensis
bv. 1 str. 16M]
gi|260565204|ref|ZP_05835688.1| ABC-type proline/glycine betaine transport system protein [Brucella
melitensis bv. 1 str. 16M]
gi|261214557|ref|ZP_05928838.1| ABC-type proline/glycine betaine transport system [Brucella abortus
bv. 3 str. Tulya]
gi|261219702|ref|ZP_05933983.1| ABC-type proline/glycine betaine transport system [Brucella ceti
M13/05/1]
gi|261222714|ref|ZP_05936995.1| ABC-type proline/glycine betaine transport system [Brucella ceti
B1/94]
gi|261318184|ref|ZP_05957381.1| ABC-type proline/glycine betaine transport system [Brucella
pinnipedialis B2/94]
gi|261322591|ref|ZP_05961788.1| ABC-type proline/glycine betaine transport system [Brucella ceti
M644/93/1]
gi|261752864|ref|ZP_05996573.1| ABC-type proline/glycine betaine transport system [Brucella suis
bv. 5 str. 513]
gi|261758753|ref|ZP_06002462.1| ABC-type proline/glycine betaine transport system [Brucella sp.
F5/99]
gi|17982349|gb|AAL51622.1| glycine betaine/l-proline-binding protein prox [Brucella melitensis
bv. 1 str. 16M]
gi|260151272|gb|EEW86366.1| ABC-type proline/glycine betaine transport system protein [Brucella
melitensis bv. 1 str. 16M]
gi|260916164|gb|EEX83025.1| ABC-type proline/glycine betaine transport system [Brucella abortus
bv. 3 str. Tulya]
gi|260921298|gb|EEX87951.1| ABC-type proline/glycine betaine transport system [Brucella ceti
B1/94]
gi|260924791|gb|EEX91359.1| ABC-type proline/glycine betaine transport system [Brucella ceti
M13/05/1]
gi|261295281|gb|EEX98777.1| ABC-type proline/glycine betaine transport system [Brucella ceti
M644/93/1]
gi|261297407|gb|EEY00904.1| ABC-type proline/glycine betaine transport system [Brucella
pinnipedialis B2/94]
gi|261738737|gb|EEY26733.1| ABC-type proline/glycine betaine transport system [Brucella sp.
F5/99]
gi|261742617|gb|EEY30543.1| ABC-type proline/glycine betaine transport system [Brucella suis
bv. 5 str. 513]
Length = 326
Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats.
Identities = 136/314 (43%), Positives = 198/314 (63%), Gaps = 8/314 (2%)
Query: 1 MYKILAVCLFLTTFSISY-----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M+ + + T +S A + SC+ VRF+D GWTDI +TTA+ + IL+ LGY
Sbjct: 12 MFTLALGGFAMGTAMLSTPEIGLAAEPASCSTVRFSDVGWTDITSTTAVATEILK-GLGY 70
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
T+IK+L+VPVT+ SL K ID+F+GYW PS+ + PYL+ +++ + NL GAKY LA
Sbjct: 71 TTDIKVLSVPVTYASLAKKDIDVFLGYWNPSMSADLQPYLDNKTVETLRTNLTGAKYTLA 130
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
V F G+K ++DIAK+K +LG KIYGIEPGN+GN+ IL MIN N F LK F L E+S
Sbjct: 131 VPQFVFDEGLKDFKDIAKFKDKLGGKIYGIEPGNDGNRLILSMINKNAFGLKSFELAESS 190
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF--GEASVYTVVRSD 233
E +Q+ R ++ P VFL+WEPHP+N I YL GG++ G G A V T VR+
Sbjct: 191 EQGMLAQVARSIKSKEPIVFLAWEPHPMNKRFKIAYLTGGDDFFGPNLGGAKVETNVRTG 250
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
Y +CPN+ + L N++F++ +EN++M IL++ ++ L+ +P +L WL GVTT
Sbjct: 251 YTQECPNVGKFLTNLEFNLDMENDIMGKILDDGEEPAKAATEWLKANPGVLNQWLAGVTT 310
Query: 294 FDGQDPSRQLERFM 307
DG++ + +
Sbjct: 311 VDGKEGLPAVRSAL 324
>gi|187919746|ref|YP_001888777.1| choline ABC transporter periplasmic binding protein [Burkholderia
phytofirmans PsJN]
gi|187718184|gb|ACD19407.1| choline ABC transporter, periplasmic binding protein [Burkholderia
phytofirmans PsJN]
Length = 311
Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats.
Identities = 133/310 (42%), Positives = 194/310 (62%), Gaps = 5/310 (1%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M ++ A L + S A + +C VRFAD GWTDIAATT + S +LE LGYK
Sbjct: 1 MKRLWAASLCALSVSSVLAAEPATCRDVRFADVGWTDIAATTGLASTVLE-GLGYKPTKT 59
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAVNDV 119
+ +VP+TF +K+K ID+F+GYW P+++ I P+ + G + ++ NL GAKY LAV D
Sbjct: 60 IASVPITFAGVKSKQIDVFLGYWSPTMDPMIDPFKKSGQLSVLPTPNLTGAKYTLAVPDY 119
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+ GIK++ DIAK +L KIYGIEPGN+GN I MI+ N++ L F+L+E+SE
Sbjct: 120 AYQSGIKTFADIAKNYDKLDGKIYGIEPGNDGNALIKKMIDTNQYGLGKFKLVESSEAGM 179
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDK 237
++ R R+ P VFL WEPHP+N + I YL GG+ + +GEA V TV SDY +
Sbjct: 180 LVEVNRAIRDKKPIVFLGWEPHPMNVQMKIDYLSGGDAVFGPNYGEAKVLTVTPSDYSTR 239
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQ 297
CPN+++L+ N++F+ +EN +M I+ NK D R L+ +P +L WL GV T+DG+
Sbjct: 240 CPNVAKLVSNLQFTTDIENHVMLPIM-NKTDPNKAAREWLKANPAVLDKWLAGVKTYDGK 298
Query: 298 DPSRQLERFM 307
D ++ ++
Sbjct: 299 DGLPAVKAYV 308
>gi|323494634|ref|ZP_08099737.1| glycine betaine/L-proline ABC transporter glycine
betaine/L-proline-binding protein [Vibrio brasiliensis
LMG 20546]
gi|323311067|gb|EGA64228.1| glycine betaine/L-proline ABC transporter glycine
betaine/L-proline-binding protein [Vibrio brasiliensis
LMG 20546]
Length = 312
Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats.
Identities = 132/311 (42%), Positives = 195/311 (62%), Gaps = 3/311 (0%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M + L S + A+ C VRFAD GWTDI ATTA+TS +L+ +GYKT
Sbjct: 1 MSMMTKTLTTLAISSFAVNAYANQCETVRFADVGWTDITATTAVTSELLK-GMGYKTKTD 59
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
LL+VPVT+ S+ N IDIF+G W P++E IA Y E GS++ V NL+GAKY LAV
Sbjct: 60 LLSVPVTYSSMANGDIDIFLGNWMPTMEGDIAKYREAGSVETVRANLEGAKYTLAVPKYV 119
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ G+KS+ D+ K+ + +IYGIEPGN+GN+ I MI+++ F LK F L+E+SE
Sbjct: 120 YDAGVKSFADLVKHSDKFKDRIYGIEPGNDGNRLIQSMIDSDAFGLKDFSLVESSEAGMV 179
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKC 238
SQ+ R R N V+L W PHP+NS++ + YL GG++ +G A+VYT VR++YL +C
Sbjct: 180 SQVTRAVRRNQWIVYLGWAPHPMNSNVEMAYLAGGDDFFGPNYGGANVYTNVRANYLSEC 239
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
N+ ++LKN++FS+ +EN++M+ ILN + L+ +P ++ WL GV T G D
Sbjct: 240 KNVGQMLKNLEFSLEMENQLMEAILNQNVKPSKAAQQWLKENPQQVEAWLKGVKTLSGDD 299
Query: 299 PSRQLERFMNN 309
+ + ++ +
Sbjct: 300 AAAAVNSYIKS 310
>gi|254505678|ref|ZP_05117824.1| ABC-type proline/glycine betaine transport system, periplasmic
component [Vibrio parahaemolyticus 16]
gi|219551331|gb|EED28310.1| ABC-type proline/glycine betaine transport system, periplasmic
component [Vibrio parahaemolyticus 16]
Length = 310
Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats.
Identities = 138/311 (44%), Positives = 203/311 (65%), Gaps = 6/311 (1%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K L+ L +++ A+ C VRFAD GWTDI ATTA+TS +L+ LGYKT
Sbjct: 2 MTKTLS---TLALSTMAMNAYANQCETVRFADVGWTDITATTAVTSELLK-GLGYKTKTD 57
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
LL+VPVT+ S+ N IDIF+G W P++E IA Y E G+++ V NL+GAKY LAV
Sbjct: 58 LLSVPVTYSSMANGDIDIFLGNWMPTMEGDIAKYREAGTVETVRANLEGAKYTLAVPKYV 117
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ G+KS+ D+A + + +IYGIEPGN+GN+ I MI++N F LK F L+E+SE
Sbjct: 118 YDAGVKSFADLATHADKFRDRIYGIEPGNDGNRLIQSMIDSNAFGLKDFNLVESSEAGMV 177
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKC 238
SQ+ R R N V+L W PHP+NS++ + YL GG++ +G A+VYT VR++YL++C
Sbjct: 178 SQVSRAVRRNQWIVYLGWAPHPMNSNVEMEYLAGGDDFFGPNYGGANVYTNVRANYLNEC 237
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
N+ +LLKN++FS+ +EN++M+ ILN L+ +P+ ++NWL GV T DG+D
Sbjct: 238 QNVGQLLKNLEFSLEMENQLMESILNQNVKPSKAALQWLQANPEQVENWLEGVKTLDGKD 297
Query: 299 PSRQLERFMNN 309
Q++ ++ +
Sbjct: 298 AVSQVQNYIGS 308
>gi|148560340|ref|YP_001259450.1| putative glycine betaine/L-proline ABC transporter periplasmic
glycine betaine-binding protein [Brucella ovis ATCC
25840]
gi|148371597|gb|ABQ61576.1| putative glycine betaine/L-proline ABC transporter, periplasmic
glycine betaine-binding protein [Brucella ovis ATCC
25840]
Length = 322
Score = 246 bits (627), Expect = 3e-63, Method: Composition-based stats.
Identities = 136/314 (43%), Positives = 199/314 (63%), Gaps = 8/314 (2%)
Query: 1 MYKILAVCLFLTTFSISY-----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M+ + + T +S A + SC+ VRF+D GWTDI +TTA+ + IL+ LGY
Sbjct: 8 MFTLALGGFAMGTAMLSTPEIGLAAEPASCSTVRFSDVGWTDITSTTAVATEILK-GLGY 66
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
T+IK+L+VPVT+ SL K ID+F+GYW PS+ + PYL+ +++ + NL GAKY LA
Sbjct: 67 TTDIKVLSVPVTYASLAKKDIDVFLGYWNPSMSADLQPYLDNKTVETLRTNLTGAKYTLA 126
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
V F G+K+++DIAK+K +LG KIYGIEPGN+GN+ IL MIN N F LK F L E+S
Sbjct: 127 VPQFVFDEGLKNFKDIAKFKDKLGGKIYGIEPGNDGNRLILSMINKNAFGLKSFELAESS 186
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF--GEASVYTVVRSD 233
E +Q+ R ++ P VFL+WEPHP+N I YL GG++ G G A V T VR+
Sbjct: 187 EQGMLAQVARSIKSKEPIVFLAWEPHPMNKRFKIAYLTGGDDFFGPNLGGAKVETNVRTG 246
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
Y +CPN+ + L N++F++ +EN++M IL++ ++ L+ +P +L WL GVTT
Sbjct: 247 YTQECPNVGKFLTNLEFNLDMENDIMGKILDDGEEPAKAATEWLKANPGVLNQWLAGVTT 306
Query: 294 FDGQDPSRQLERFM 307
DG++ + +
Sbjct: 307 VDGKEGLPAVRSAL 320
>gi|150397505|ref|YP_001327972.1| substrate-binding region of ABC-type glycine betaine transport
system [Sinorhizobium medicae WSM419]
gi|150029020|gb|ABR61137.1| Substrate-binding region of ABC-type glycine betaine transport
system [Sinorhizobium medicae WSM419]
Length = 318
Score = 246 bits (627), Expect = 3e-63, Method: Composition-based stats.
Identities = 145/304 (47%), Positives = 211/304 (69%), Gaps = 3/304 (0%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP 65
AVC+ T ++A + +SC VRF+D GWTDI ATTA + ILE LGY+T++K+L+VP
Sbjct: 14 AVCMATLTAGPAFAAEPESCGTVRFSDVGWTDITATTATATTILEA-LGYETDVKVLSVP 72
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
VT+ SLKNK ID+F+G W P++E IAPY E+ S++ V ENL GAKY LA N G LGI
Sbjct: 73 VTYTSLKNKDIDVFLGNWMPTMEADIAPYREDKSVETVRENLAGAKYTLATNAKGAELGI 132
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
K ++DIA +K+EL KIYGIEPGN+GN+ I+DM+ F LKGF ++E+SE +Q+ R
Sbjct: 133 KDFKDIAAHKEELDGKIYGIEPGNDGNRLIIDMVEKGTFDLKGFEVVESSEQGMLAQVAR 192
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISR 243
+++ P VFL WEPHP+N++ + YL GG+++ +G A+V+T VR+ Y +CPN+ +
Sbjct: 193 AEKSGDPIVFLGWEPHPMNANFKLTYLSGGDDVFGPDYGGATVHTNVRAGYTTECPNVGK 252
Query: 244 LLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQL 303
LL+N+ FS+ +ENE+M ILN+ +D + + L+ +P ++ WL GVTT DG D +
Sbjct: 253 LLQNLSFSLQMENEIMGKILNDGEDPEKAAASWLKDNPQAIEPWLAGVTTKDGGDGPAAV 312
Query: 304 ERFM 307
+ +
Sbjct: 313 KSAL 316
>gi|260777813|ref|ZP_05886706.1| L-proline glycine betaine binding ABC transporter protein proX
[Vibrio coralliilyticus ATCC BAA-450]
gi|260605826|gb|EEX32111.1| L-proline glycine betaine binding ABC transporter protein proX
[Vibrio coralliilyticus ATCC BAA-450]
Length = 312
Score = 246 bits (627), Expect = 3e-63, Method: Composition-based stats.
Identities = 136/311 (43%), Positives = 200/311 (64%), Gaps = 3/311 (0%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M + + +++ A A+ C VRFAD GWTDI ATTA+TS +L+ +GYKT
Sbjct: 1 MSMMTKTLSTIALSTMATAAYANQCETVRFADVGWTDITATTAVTSELLK-GMGYKTKTD 59
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
LL+VPVT+ S+ N IDIF+G W P++E IA Y E G+++ V NL+GAKY LAV
Sbjct: 60 LLSVPVTYSSMANGDIDIFLGNWMPTMEGDIAKYREAGTVETVRANLEGAKYTLAVPKYV 119
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ G+KS+ DIAK + +IYGIEPGN+GN+ I MI+++ F LKGF L+E+SE
Sbjct: 120 YDAGVKSFADIAKNADKFKDRIYGIEPGNDGNRLIQSMIDSDAFGLKGFSLVESSEAGMV 179
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKC 238
SQ+ R R N V+L W PHP+NS++++ YL GG++ +G A+VYT VRS+YL++C
Sbjct: 180 SQVSRAARRNQWIVYLGWAPHPMNSNVDMEYLDGGDDFFGPNYGGANVYTNVRSNYLNEC 239
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
N+ +LL+N++FS+ +ENE+M+ ILN L+ +P+ +K+WL GV T G D
Sbjct: 240 QNVGQLLQNLEFSLEMENELMEAILNQNIKPSKAALKWLQANPEQVKSWLKGVKTLSGSD 299
Query: 299 PSRQLERFMNN 309
+ ++ +
Sbjct: 300 AVEAVNNYVKS 310
>gi|261755522|ref|ZP_05999231.1| ABC-type proline/glycine betaine transport system [Brucella suis
bv. 3 str. 686]
gi|261745275|gb|EEY33201.1| ABC-type proline/glycine betaine transport system [Brucella suis
bv. 3 str. 686]
Length = 326
Score = 246 bits (627), Expect = 3e-63, Method: Composition-based stats.
Identities = 136/314 (43%), Positives = 198/314 (63%), Gaps = 8/314 (2%)
Query: 1 MYKILAVCLFLTTFSISY-----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M+ + + T +S A + SC+ VRF+D GWTDI +TTA+ + IL+ LGY
Sbjct: 12 MFTLALGGFAMGTAMLSTPEIGLAAEPASCSTVRFSDVGWTDITSTTAVATEILK-GLGY 70
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
T+IK+L+VPVT+ SL K ID+F+GYW PS+ + PYL+ +++ + NL GAKY LA
Sbjct: 71 TTDIKVLSVPVTYASLAKKDIDVFLGYWNPSMSADLQPYLDNKTVETLRTNLTGAKYTLA 130
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
V F G+K ++DIAK+K +LG KIYGIEPGN+GN+ IL MIN N F LK F L E+S
Sbjct: 131 VPQFVFDEGLKDFKDIAKFKDKLGGKIYGIEPGNDGNRLILSMINKNAFGLKSFELAESS 190
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF--GEASVYTVVRSD 233
E +Q+ R ++ P VFL+WEPHP+N I YL GG++ G G A V T VR+
Sbjct: 191 EQGMLAQVARSIKSKEPIVFLAWEPHPMNKRFKIAYLTGGDDFFGPNLGGAKVETNVRTG 250
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
Y +CPN+ + L N++F++ +EN++M IL++ ++ L+ +P +L WL GVTT
Sbjct: 251 YTQECPNVGKFLTNLEFNLDIENDIMGKILDDGEEPAKAATEWLKANPGVLNQWLAGVTT 310
Query: 294 FDGQDPSRQLERFM 307
DG++ + +
Sbjct: 311 VDGKEGLPAVRSAL 324
>gi|260903031|ref|ZP_05911426.1| glycine betaine/L-proline ABC transporter glycine
betaine/L-proline-binding protein [Vibrio
parahaemolyticus AQ4037]
gi|308108301|gb|EFO45841.1| glycine betaine/L-proline ABC transporter glycine
betaine/L-proline-binding protein [Vibrio
parahaemolyticus AQ4037]
Length = 312
Score = 246 bits (627), Expect = 4e-63, Method: Composition-based stats.
Identities = 136/311 (43%), Positives = 199/311 (63%), Gaps = 3/311 (0%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K+ + + S++ A+ C VRFAD GWTDI ATTA+T+ +L+ LGYKT
Sbjct: 1 MSKMTKILSTIALSSVATGAYANQCETVRFADVGWTDITATTAVTTELLK-GLGYKTKTD 59
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
LL+VPVT+ S+ N IDIF+G W P++E IA Y + G+++ V NL GAKY LAV
Sbjct: 60 LLSVPVTYSSMANGDIDIFLGNWMPTMEGDIAKYRDAGTVETVKANLVGAKYTLAVPKYV 119
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ G+KS+ D+ K+ + +IYGIEPGN+GN+ I MI++N F LK F L+E+SE
Sbjct: 120 YDAGVKSFADLEKHADKFKDRIYGIEPGNDGNRLIQSMIDSNAFGLKDFSLVESSEAGMV 179
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKC 238
SQ+ R R N V+L W PHP+N+++ + YL GG++ +G A+VYT VR +YL +C
Sbjct: 180 SQVSRAVRRNQWIVYLGWAPHPMNNNVEMEYLAGGDDFFGPNYGGANVYTNVRKNYLAEC 239
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN+ +L+KN++FS+ +ENE+M+ ILN KQ + L + D ++ WL V T DGQD
Sbjct: 240 PNVGQLVKNLEFSLEMENELMEAILNQKQKPSKAAQAWLNANADKIEVWLKDVKTVDGQD 299
Query: 299 PSRQLERFMNN 309
+ R++ +
Sbjct: 300 AQSAIARYLKD 310
>gi|265999366|ref|ZP_05465997.2| ABC-type proline/glycine betaine transport system [Brucella
melitensis bv. 2 str. 63/9]
gi|263093472|gb|EEZ17522.1| ABC-type proline/glycine betaine transport system [Brucella
melitensis bv. 2 str. 63/9]
Length = 326
Score = 246 bits (627), Expect = 4e-63, Method: Composition-based stats.
Identities = 135/314 (42%), Positives = 198/314 (63%), Gaps = 8/314 (2%)
Query: 1 MYKILAVCLFLTTFSISY-----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M+ + + T +S A + SC+ VRF+D GWTDI +TTA+ + IL+ LGY
Sbjct: 12 MFTLALGGFAMGTAMLSTPEIGLAAEPASCSTVRFSDVGWTDITSTTAVATEILK-GLGY 70
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
T+IK+L+VPVT+ S+ K ID+F+GYW PS+ + PYL+ +++ + NL GAKY LA
Sbjct: 71 TTDIKVLSVPVTYASVAKKDIDVFLGYWNPSMSADLQPYLDNKTVETLRTNLTGAKYTLA 130
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
V F G+K ++DIAK+K +LG KIYGIEPGN+GN+ IL MIN N F LK F L E+S
Sbjct: 131 VPQFVFDEGLKDFKDIAKFKDKLGGKIYGIEPGNDGNRLILSMINKNAFGLKSFELAESS 190
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF--GEASVYTVVRSD 233
E +Q+ R ++ P VFL+WEPHP+N I YL GG++ G G A V T VR+
Sbjct: 191 EQGMLAQVARSIKSKDPIVFLAWEPHPMNKRFKIAYLTGGDDFFGPNLGGAKVETNVRTG 250
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
Y +CPN+ + L N++F++ +EN++M IL++ ++ L+ +P +L WL GVTT
Sbjct: 251 YTQECPNVGKFLTNLEFNLDMENDIMGKILDDGEEPAKAATEWLKANPGVLNQWLAGVTT 310
Query: 294 FDGQDPSRQLERFM 307
DG++ + +
Sbjct: 311 VDGKEGLPAVRSAL 324
>gi|254719608|ref|ZP_05181419.1| glycine betaine/L-proline-binding protein PROX [Brucella sp. 83/13]
gi|306837900|ref|ZP_07470760.1| choline ABC transporter, periplasmic binding protein [Brucella sp.
NF 2653]
gi|306844579|ref|ZP_07477166.1| choline ABC transporter, periplasmic binding protein [Brucella sp.
BO1]
gi|306275023|gb|EFM56786.1| choline ABC transporter, periplasmic binding protein [Brucella sp.
BO1]
gi|306406988|gb|EFM63207.1| choline ABC transporter, periplasmic binding protein [Brucella sp.
NF 2653]
Length = 322
Score = 246 bits (627), Expect = 4e-63, Method: Composition-based stats.
Identities = 136/314 (43%), Positives = 199/314 (63%), Gaps = 8/314 (2%)
Query: 1 MYKILAVCLFLTTFSISY-----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M+ + + T +S A + SC+ VRF+D GWTDI +TTA+ + IL+ LGY
Sbjct: 8 MFTLALGGFAMGTAMLSTPEIGLAAEPASCSTVRFSDVGWTDITSTTAVATEILK-GLGY 66
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
T+IK+L+VPVT+ SL K ID+F+GYW PS+ + PYL+ +++ + NL GAKY LA
Sbjct: 67 TTDIKVLSVPVTYASLAKKDIDVFLGYWNPSMSADLQPYLDNKTVETLRTNLTGAKYTLA 126
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
V F G+K ++DIAK+K +LG KIYGIEPGN+GN+ IL MIN N F LK F L E+S
Sbjct: 127 VPQFVFDEGLKDFKDIAKFKDKLGGKIYGIEPGNDGNRLILSMINKNAFGLKSFELAESS 186
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF--GEASVYTVVRSD 233
E +Q+ R ++ P VFL+WEPHP+N I YL GG++ G G A V T VR+
Sbjct: 187 EQGMLAQVARSIKSKEPIVFLAWEPHPMNKRFKIAYLTGGDDFFGPNLGGAKVETNVRTG 246
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
Y +CPN+ + L N++F++ +EN++M IL++ ++ L+ +P +L WL GVTT
Sbjct: 247 YTQECPNVGKFLTNLEFNLDMENDIMGKILDDGEEPAKAATEWLKANPGVLNQWLAGVTT 306
Query: 294 FDGQDPSRQLERFM 307
DG++ ++ +
Sbjct: 307 VDGKEGLPAVKSAL 320
>gi|19880073|gb|AAM00244.1|AF360731_1 ProX [Sinorhizobium meliloti]
Length = 309
Score = 245 bits (626), Expect = 4e-63, Method: Composition-based stats.
Identities = 144/304 (47%), Positives = 208/304 (68%), Gaps = 3/304 (0%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP 65
AVC+ T ++A + +SC VRF+D GWTDI ATTA + ILE LGY+T++K+L+VP
Sbjct: 5 AVCMATLTAGSAFAAEPESCGTVRFSDVGWTDITATTATATTILEA-LGYETDVKVLSVP 63
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
VT+ SLKNK ID+F+G W P++E IAPY E+ S++ V ENL GAKY LA N G LGI
Sbjct: 64 VTYTSLKNKDIDVFLGNWMPTMEADIAPYREDKSVETVRENLAGAKYTLATNAKGAELGI 123
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
K ++DIA +K EL KIYGIEPGN+GN+ I+DM+ F LKGF ++E+SE +Q+ R
Sbjct: 124 KDFKDIAAHKDELDGKIYGIEPGNDGNRLIIDMVEKGTFDLKGFEVVESSEQGMLAQVAR 183
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISR 243
+++ P VFL WEPHP+N++ + YL GG+++ +G A+V+T VR+ Y +CPN+ +
Sbjct: 184 AEKSGDPIVFLGWEPHPMNANFKLTYLSGGDDVFGPNYGGATVHTNVRAGYTTECPNVGK 243
Query: 244 LLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQL 303
LL+N+ FS+ +ENE+M ILN+ +D + L+ +P ++ WL GV T DG D +
Sbjct: 244 LLQNLSFSLQMENEIMGKILNDGEDPEKAAAAWLKDNPQSIEPWLSGVATKDGGDGLAAV 303
Query: 304 ERFM 307
+ +
Sbjct: 304 KAAL 307
>gi|90577629|ref|ZP_01233440.1| putative glycine betaine-binding ABC transporter [Vibrio angustum
S14]
gi|90440715|gb|EAS65895.1| putative glycine betaine-binding ABC transporter [Vibrio angustum
S14]
Length = 311
Score = 245 bits (626), Expect = 4e-63, Method: Composition-based stats.
Identities = 134/309 (43%), Positives = 194/309 (62%), Gaps = 6/309 (1%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
K L L L S+++ A+ C VRFAD GWTDI ATTA+TS +L+ +GY T L
Sbjct: 5 KKTL---LALALSSVAFNSYANQCDTVRFADVGWTDITATTAVTSELLK-GMGYSTKTDL 60
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
L+VPVT+ S+ N ID+F+G W P++E IA Y E +++ V NL+GAKY LAV +
Sbjct: 61 LSVPVTYSSMANGDIDVFLGNWMPTMEGDIAKYREAKTVETVKANLEGAKYTLAVPKYVY 120
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
G+KS+ D+AK+ + +IYGIEPGN+GN+ I MI+ N F LK F L+E+SE S
Sbjct: 121 DAGVKSFADLAKHADKFKGRIYGIEPGNDGNRLIQSMIDTNAFGLKDFSLVESSEAGMVS 180
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCP 239
Q+ R R + V+L W PHP+NS++ + YL GG++ +G A+VYT VRS+YL +CP
Sbjct: 181 QVSRSVRRDQWIVYLGWAPHPMNSNVEMEYLAGGDDFFGPNYGGANVYTNVRSNYLTECP 240
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDP 299
N+ +LLKN+ FS+ +EN +M+ ILN K + R L +P ++ WL V T +G
Sbjct: 241 NVGQLLKNLSFSLEMENSLMEAILNQKVQPEKAARQWLSENPQQVEAWLKDVKTREGNVA 300
Query: 300 SRQLERFMN 308
+ + ++
Sbjct: 301 ATAVLDYLK 309
>gi|225628016|ref|ZP_03786052.1| choline ABC transporter, periplasmic binding protein [Brucella ceti
str. Cudo]
gi|254694249|ref|ZP_05156077.1| putative glycine betaine/L-proline ABC transporter, periplasmic
glycine betaine-binding protein [Brucella abortus bv. 3
str. Tulya]
gi|254702296|ref|ZP_05164124.1| putative glycine betaine/L-proline ABC transporter, periplasmic
glycine betaine-binding protein [Brucella suis bv. 5
str. 513]
gi|254710611|ref|ZP_05172422.1| putative glycine betaine/L-proline ABC transporter, periplasmic
glycine betaine-binding protein [Brucella pinnipedialis
B2/94]
gi|254714794|ref|ZP_05176605.1| putative glycine betaine/L-proline ABC transporter, periplasmic
glycine betaine-binding protein [Brucella ceti
M644/93/1]
gi|254717855|ref|ZP_05179666.1| putative glycine betaine/L-proline ABC transporter, periplasmic
glycine betaine-binding protein [Brucella ceti M13/05/1]
gi|256032105|ref|ZP_05445719.1| putative glycine betaine/L-proline ABC transporter, periplasmic
glycine betaine-binding protein [Brucella pinnipedialis
M292/94/1]
gi|256045196|ref|ZP_05448095.1| putative glycine betaine/L-proline ABC transporter, periplasmic
glycine betaine-binding protein [Brucella melitensis bv.
1 str. Rev.1]
gi|256114148|ref|ZP_05454902.1| putative glycine betaine/L-proline ABC transporter, periplasmic
glycine betaine-binding protein [Brucella melitensis bv.
3 str. Ether]
gi|256160301|ref|ZP_05457995.1| putative glycine betaine/L-proline ABC transporter, periplasmic
glycine betaine-binding protein [Brucella ceti
M490/95/1]
gi|256255505|ref|ZP_05461041.1| putative glycine betaine/L-proline ABC transporter, periplasmic
glycine betaine-binding protein [Brucella ceti B1/94]
gi|256369994|ref|YP_003107505.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein, putative [Brucella microti CCM
4915]
gi|260169240|ref|ZP_05756051.1| putative glycine betaine/L-proline ABC transporter, periplasmic
glycine betaine-binding protein [Brucella sp. F5/99]
gi|265989215|ref|ZP_06101772.1| glycine betaine/L-proline ABC transporter periplasmic glycine
betaine-binding protein [Brucella pinnipedialis
M292/94/1]
gi|265991630|ref|ZP_06104187.1| glycine betaine/L-proline ABC transporter periplasmic glycine
betaine-binding protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|265995467|ref|ZP_06108024.1| glycine betaine/L-proline ABC transporter periplasmic glycine
betaine-binding protein [Brucella melitensis bv. 3 str.
Ether]
gi|265998678|ref|ZP_06111235.1| glycine betaine/L-proline ABC transporter periplasmic glycine
betaine-binding protein [Brucella ceti M490/95/1]
gi|225617179|gb|EEH14225.1| choline ABC transporter, periplasmic binding protein [Brucella ceti
str. Cudo]
gi|256000157|gb|ACU48556.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein, putative [Brucella microti CCM
4915]
gi|262553302|gb|EEZ09136.1| glycine betaine/L-proline ABC transporter periplasmic glycine
betaine-binding protein [Brucella ceti M490/95/1]
gi|262766580|gb|EEZ12369.1| glycine betaine/L-proline ABC transporter periplasmic glycine
betaine-binding protein [Brucella melitensis bv. 3 str.
Ether]
gi|263002414|gb|EEZ14989.1| glycine betaine/L-proline ABC transporter periplasmic glycine
betaine-binding protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|264661412|gb|EEZ31673.1| glycine betaine/L-proline ABC transporter periplasmic glycine
betaine-binding protein [Brucella pinnipedialis
M292/94/1]
Length = 322
Score = 245 bits (626), Expect = 5e-63, Method: Composition-based stats.
Identities = 136/314 (43%), Positives = 198/314 (63%), Gaps = 8/314 (2%)
Query: 1 MYKILAVCLFLTTFSISY-----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M+ + + T +S A + SC+ VRF+D GWTDI +TTA+ + IL+ LGY
Sbjct: 8 MFTLALGGFAMGTAMLSTPEIGLAAEPASCSTVRFSDVGWTDITSTTAVATEILK-GLGY 66
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
T+IK+L+VPVT+ SL K ID+F+GYW PS+ + PYL+ +++ + NL GAKY LA
Sbjct: 67 TTDIKVLSVPVTYASLAKKDIDVFLGYWNPSMSADLQPYLDNKTVETLRTNLTGAKYTLA 126
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
V F G+K ++DIAK+K +LG KIYGIEPGN+GN+ IL MIN N F LK F L E+S
Sbjct: 127 VPQFVFDEGLKDFKDIAKFKDKLGGKIYGIEPGNDGNRLILSMINKNAFGLKSFELAESS 186
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF--GEASVYTVVRSD 233
E +Q+ R ++ P VFL+WEPHP+N I YL GG++ G G A V T VR+
Sbjct: 187 EQGMLAQVARSIKSKEPIVFLAWEPHPMNKRFKIAYLTGGDDFFGPNLGGAKVETNVRTG 246
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
Y +CPN+ + L N++F++ +EN++M IL++ ++ L+ +P +L WL GVTT
Sbjct: 247 YTQECPNVGKFLTNLEFNLDMENDIMGKILDDGEEPAKAATEWLKANPGVLNQWLAGVTT 306
Query: 294 FDGQDPSRQLERFM 307
DG++ + +
Sbjct: 307 VDGKEGLPAVRSAL 320
>gi|256061629|ref|ZP_05451768.1| glycine betaine/L-proline-binding protein PROX [Brucella neotomae
5K33]
gi|261325636|ref|ZP_05964833.1| glycine betaine/L-proline ABC transporter periplasmic glycine
betaine-binding protein [Brucella neotomae 5K33]
gi|261301616|gb|EEY05113.1| glycine betaine/L-proline ABC transporter periplasmic glycine
betaine-binding protein [Brucella neotomae 5K33]
Length = 322
Score = 245 bits (625), Expect = 5e-63, Method: Composition-based stats.
Identities = 135/314 (42%), Positives = 197/314 (62%), Gaps = 8/314 (2%)
Query: 1 MYKILAVCLFLTTFSISY-----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M+ + + T +S A + SC+ VRF+D GWTDI +TTA+ + IL+ LGY
Sbjct: 8 MFTLALGGFAMGTAMLSTPEIGLAAEPASCSTVRFSDVGWTDITSTTAVATEILK-GLGY 66
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
T+IK+L+VPVT+ L K ID+F+GYW PS+ + PYL+ +++ + NL GAKY LA
Sbjct: 67 TTDIKVLSVPVTYALLAKKDIDVFLGYWNPSMSADLQPYLDNKTVETLRTNLTGAKYTLA 126
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
V F G+K ++DIAK+K +LG KIYGIEPGN+GN+ IL MIN N F LK F L E+S
Sbjct: 127 VPQFVFDEGLKDFKDIAKFKDKLGGKIYGIEPGNDGNRLILSMINKNAFGLKSFELAESS 186
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF--GEASVYTVVRSD 233
E +Q+ R ++ P VFL+WEPHP+N I YL GG++ G G A V T VR+
Sbjct: 187 EQGMLAQVARSIKSKEPIVFLAWEPHPMNKRFKIAYLTGGDDFFGPNLGGAKVETNVRTG 246
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
Y +CPN+ + L N++F++ +EN++M IL++ ++ L+ +P +L WL GVTT
Sbjct: 247 YTQECPNVGKFLTNLEFNLDMENDIMGKILDDGEEPAKAATEWLKANPGVLNQWLAGVTT 306
Query: 294 FDGQDPSRQLERFM 307
DG++ + +
Sbjct: 307 VDGKEGLPAVRSAL 320
>gi|254704826|ref|ZP_05166654.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein, putative [Brucella suis bv. 3
str. 686]
Length = 322
Score = 245 bits (625), Expect = 6e-63, Method: Composition-based stats.
Identities = 136/314 (43%), Positives = 198/314 (63%), Gaps = 8/314 (2%)
Query: 1 MYKILAVCLFLTTFSISY-----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M+ + + T +S A + SC+ VRF+D GWTDI +TTA+ + IL+ LGY
Sbjct: 8 MFTLALGGFAMGTAMLSTPEIGLAAEPASCSTVRFSDVGWTDITSTTAVATEILK-GLGY 66
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
T+IK+L+VPVT+ SL K ID+F+GYW PS+ + PYL+ +++ + NL GAKY LA
Sbjct: 67 TTDIKVLSVPVTYASLAKKDIDVFLGYWNPSMSADLQPYLDNKTVETLRTNLTGAKYTLA 126
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
V F G+K ++DIAK+K +LG KIYGIEPGN+GN+ IL MIN N F LK F L E+S
Sbjct: 127 VPQFVFDEGLKDFKDIAKFKDKLGGKIYGIEPGNDGNRLILSMINKNAFGLKSFELAESS 186
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF--GEASVYTVVRSD 233
E +Q+ R ++ P VFL+WEPHP+N I YL GG++ G G A V T VR+
Sbjct: 187 EQGMLAQVARSIKSKEPIVFLAWEPHPMNKRFKIAYLTGGDDFFGPNLGGAKVETNVRTG 246
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
Y +CPN+ + L N++F++ +EN++M IL++ ++ L+ +P +L WL GVTT
Sbjct: 247 YTQECPNVGKFLTNLEFNLDIENDIMGKILDDGEEPAKAATEWLKANPGVLNQWLAGVTT 306
Query: 294 FDGQDPSRQLERFM 307
DG++ + +
Sbjct: 307 VDGKEGLPAVRSAL 320
>gi|153008919|ref|YP_001370134.1| glycine betaine ABC transporter substrate-binding protein
[Ochrobactrum anthropi ATCC 49188]
gi|151560807|gb|ABS14305.1| Substrate-binding region of ABC-type glycine betaine transport
system [Ochrobactrum anthropi ATCC 49188]
Length = 322
Score = 245 bits (625), Expect = 6e-63, Method: Composition-based stats.
Identities = 133/306 (43%), Positives = 197/306 (64%), Gaps = 3/306 (0%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
+ L+ + +A + +SC+ VRF+D GWTDI +TTA+ + IL+ LGYKT+IK+L+
Sbjct: 16 LATGTAMLSAPATGFAAEPESCSTVRFSDVGWTDITSTTAVATEILK-GLGYKTDIKVLS 74
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
VPVT+ SL K ID+F+GYW PS+ + PYL+ +++ + NL GAKY LAV +
Sbjct: 75 VPVTYASLSKKDIDVFLGYWNPSMTADLQPYLDNKTVETLRTNLTGAKYTLAVPKYAYDE 134
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
G+K ++DIA +K +LG KIYGIEPGN+GN+ ILDMIN + F LK F L E+SE +Q+
Sbjct: 135 GLKDFKDIATFKDKLGGKIYGIEPGNDGNRLILDMINKDAFGLKSFELAESSEQGMLAQV 194
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF--GEASVYTVVRSDYLDKCPNI 241
R ++ P VFL+WEPHP+N I YL GG++ G G A V T VR+ Y +CPN+
Sbjct: 195 ARSIKSKEPVVFLAWEPHPMNKRFEIAYLTGGDDFFGPNLGGAKVETNVRTGYTQECPNV 254
Query: 242 SRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSR 301
+ L N++F + +EN++M IL++ ++ L+ +P L WL GVTT DG++
Sbjct: 255 GKFLTNLEFKLDIENDIMGKILDDGEEPSKAATNWLKANPGALDQWLAGVTTVDGKEGLP 314
Query: 302 QLERFM 307
++ +
Sbjct: 315 AVKAAL 320
>gi|225853054|ref|YP_002733287.1| choline ABC transporter periplasmic binding protein [Brucella
melitensis ATCC 23457]
gi|225641419|gb|ACO01333.1| choline ABC transporter, periplasmic binding protein [Brucella
melitensis ATCC 23457]
gi|326409596|gb|ADZ66661.1| choline ABC transporter periplasmic binding protein [Brucella
melitensis M28]
gi|326539300|gb|ADZ87515.1| choline ABC transporter, periplasmic binding protein [Brucella
melitensis M5-90]
Length = 322
Score = 245 bits (625), Expect = 6e-63, Method: Composition-based stats.
Identities = 135/314 (42%), Positives = 198/314 (63%), Gaps = 8/314 (2%)
Query: 1 MYKILAVCLFLTTFSISY-----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M+ + + T +S A + SC+ VRF+D GWTDI +TTA+ + IL+ LGY
Sbjct: 8 MFTLALGGFAMGTAMLSTPEIGLAAEPASCSTVRFSDVGWTDITSTTAVATEILK-GLGY 66
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
T+IK+L+VPVT+ S+ K ID+F+GYW PS+ + PYL+ +++ + NL GAKY LA
Sbjct: 67 TTDIKVLSVPVTYASVAKKDIDVFLGYWNPSMSADLQPYLDNKTVETLRTNLTGAKYTLA 126
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
V F G+K ++DIAK+K +LG KIYGIEPGN+GN+ IL MIN N F LK F L E+S
Sbjct: 127 VPQFVFDEGLKDFKDIAKFKDKLGGKIYGIEPGNDGNRLILSMINKNAFGLKSFELAESS 186
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF--GEASVYTVVRSD 233
E +Q+ R ++ P VFL+WEPHP+N I YL GG++ G G A V T VR+
Sbjct: 187 EQGMLAQVARSIKSKDPIVFLAWEPHPMNKRFKIAYLTGGDDFFGPNLGGAKVETNVRTG 246
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
Y +CPN+ + L N++F++ +EN++M IL++ ++ L+ +P +L WL GVTT
Sbjct: 247 YTQECPNVGKFLTNLEFNLDMENDIMGKILDDGEEPAKAATEWLKANPGVLNQWLAGVTT 306
Query: 294 FDGQDPSRQLERFM 307
DG++ + +
Sbjct: 307 VDGKEGLPAVRSAL 320
>gi|261252052|ref|ZP_05944626.1| L-proline glycine betaine binding ABC transporter protein proX
[Vibrio orientalis CIP 102891]
gi|260938925|gb|EEX94913.1| L-proline glycine betaine binding ABC transporter protein proX
[Vibrio orientalis CIP 102891]
Length = 312
Score = 245 bits (625), Expect = 6e-63, Method: Composition-based stats.
Identities = 137/311 (44%), Positives = 196/311 (63%), Gaps = 3/311 (0%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M + + S++ A+ C VRFAD GWTDI ATTA+TS +L+ LGYKT
Sbjct: 1 MSMMTKTLSTIALSSLAMNAYANQCETVRFADVGWTDITATTAVTSELLK-GLGYKTKTD 59
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
LL+VPVT+ S+ N IDIF+G W P++E IA Y E GS++ V NL+GAKY LAV
Sbjct: 60 LLSVPVTYSSMANGDIDIFLGNWMPTMEGDIAKYREAGSVETVRANLEGAKYTLAVPKYV 119
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ G+KS+ D+AK + +IYGIEPGN+GN+ I MI+++ F LK F L+E+SE
Sbjct: 120 YDAGVKSFADLAKNADKFKDRIYGIEPGNDGNRLIQSMIDSDAFGLKDFSLVESSEAGMV 179
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKC 238
SQ+ R R N V+L W PHP+NS++ + YL GG++ +G A+VYT VR DYL++C
Sbjct: 180 SQVSRAVRRNQWIVYLGWAPHPMNSNIEMAYLDGGDDFFGPNYGGANVYTNVRKDYLNEC 239
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
N+ LLKN++FS+ +ENE+M+ ILN + L+ +P L+ WL GV T G++
Sbjct: 240 QNVGNLLKNLEFSLEMENELMEAILNQNVKPAKAAQQWLKANPQQLEAWLNGVKTLQGEE 299
Query: 299 PSRQLERFMNN 309
+ ++N+
Sbjct: 300 AQGAVTSYINS 310
>gi|260546993|ref|ZP_05822732.1| ABC-type proline/glycine betaine transport system protein [Brucella
abortus NCTC 8038]
gi|260755293|ref|ZP_05867641.1| ABC-type proline/glycine betaine transport system [Brucella abortus
bv. 6 str. 870]
gi|260758514|ref|ZP_05870862.1| ABC-type proline/glycine betaine transport system [Brucella abortus
bv. 4 str. 292]
gi|260762338|ref|ZP_05874681.1| ABC-type proline/glycine betaine transport system [Brucella abortus
bv. 2 str. 86/8/59]
gi|260096043|gb|EEW79920.1| ABC-type proline/glycine betaine transport system protein [Brucella
abortus NCTC 8038]
gi|260668832|gb|EEX55772.1| ABC-type proline/glycine betaine transport system [Brucella abortus
bv. 4 str. 292]
gi|260672770|gb|EEX59591.1| ABC-type proline/glycine betaine transport system [Brucella abortus
bv. 2 str. 86/8/59]
gi|260675401|gb|EEX62222.1| ABC-type proline/glycine betaine transport system [Brucella abortus
bv. 6 str. 870]
Length = 326
Score = 245 bits (625), Expect = 7e-63, Method: Composition-based stats.
Identities = 136/314 (43%), Positives = 198/314 (63%), Gaps = 8/314 (2%)
Query: 1 MYKILAVCLFLTTFSISY-----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M+ + + T +S A + SC+ VRF+D GWTDI +TTA+ + IL+ LGY
Sbjct: 12 MFTLALGGFAMGTAMLSTPEIGLAAEPASCSTVRFSDVGWTDITSTTAVATEILK-GLGY 70
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
T+IK+L+VPVT+ SL K ID+F+GYW PS+ + PYL+ +++ + NL GAKY LA
Sbjct: 71 TTDIKVLSVPVTYASLAKKDIDVFLGYWNPSMSADLQPYLDNKTVETLRTNLTGAKYTLA 130
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
V F G+K ++DIAK+K +LG KIYGIEPGN+GN+ IL MIN N F LK F L E+S
Sbjct: 131 VPQFVFDEGLKDFKDIAKFKDKLGGKIYGIEPGNDGNRLILSMINKNAFGLKSFELAESS 190
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF--GEASVYTVVRSD 233
E +Q+ R ++ P VFL+WEPHP+N I YL GG++ G G A V T VR+
Sbjct: 191 EQGMLAQVARSIKSKEPIVFLAWEPHPMNKRFKIAYLTGGDDFFGPNLGGAKVETNVRTG 250
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
Y +CPN+ + L N++F++ +EN++M IL++ ++ L+ +P +L WL GVTT
Sbjct: 251 YTQECPNVGKFLTNLEFNLDMENDIMGKILDDGEEPAKAATEWLKANPGVLNQWLAGVTT 310
Query: 294 FDGQDPSRQLERFM 307
DG++ + +
Sbjct: 311 VDGKEGLPAVRLAL 324
>gi|23502443|ref|NP_698570.1| glycine betaine/L-proline ABC transporter periplasmic glycine
betaine-binding protein [Brucella suis 1330]
gi|23348433|gb|AAN30485.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein, putative [Brucella suis 1330]
Length = 322
Score = 245 bits (625), Expect = 7e-63, Method: Composition-based stats.
Identities = 136/314 (43%), Positives = 198/314 (63%), Gaps = 8/314 (2%)
Query: 1 MYKILAVCLFLTTFSISY-----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M+ + + T +S A + SC+ VRF+D GWTDI +TTA+ + IL+ LGY
Sbjct: 8 MFTLALGGFAMGTAMLSTPEIGLAAEPASCSTVRFSDVGWTDITSTTAVATEILK-GLGY 66
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
T+IK+L+VPVT+ SL K ID+F+GYW PS+ + PYL+ +++ + NL GAKY LA
Sbjct: 67 TTDIKVLSVPVTYASLAKKDIDVFLGYWNPSMSADLQPYLDNKTVETLRTNLTGAKYTLA 126
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
V F G+K ++DIAK+K +LG KIYGIEPGN+GN+ IL MIN N F LK F L E+S
Sbjct: 127 VPQFVFDEGLKDFKDIAKFKDKLGGKIYGIEPGNDGNRLILSMINKNAFGLKSFELAESS 186
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF--GEASVYTVVRSD 233
E +Q+ R ++ P VFL+WEPHP+N I YL GG++ G G A V T VR+
Sbjct: 187 EQGMLAQVARSIKSKEPIVFLAWEPHPMNKRFKIAYLTGGDDFFGPNLGGAKVETNVRTG 246
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
Y +CPN+ + L N++F++ +EN++M IL++ ++ L+ +P +L WL GVTT
Sbjct: 247 YTQECPNVGKFLTNLEFNLDIENDIMGKILDDGEEPAKAATEWLKANPGVLNQWLAGVTT 306
Query: 294 FDGQDPSRQLERFM 307
DG++ + +
Sbjct: 307 VDGKEGLPAVRSAL 320
>gi|92113641|ref|YP_573569.1| substrate-binding region of ABC-type glycine betaine transport
system [Chromohalobacter salexigens DSM 3043]
gi|91796731|gb|ABE58870.1| Substrate-binding region of ABC-type glycine betaine transport
system [Chromohalobacter salexigens DSM 3043]
Length = 316
Score = 245 bits (625), Expect = 7e-63, Method: Composition-based stats.
Identities = 112/307 (36%), Positives = 185/307 (60%), Gaps = 3/307 (0%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
I + ++ A +SC PVRFA+ GWTDI ATTA+T +LE LGY+T ++
Sbjct: 8 IALLGATTLLSPLAMANTPESCQPVRFAEVGWTDITATTALTREVLE-GLGYETTSNTVS 66
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
VPV + +KN D+F+G W PS+ Y+++G + + NL+GAKY LAV +
Sbjct: 67 VPVAYAGMKNGDFDVFLGNWMPSMASISDEYIDKGQVDRLGANLEGAKYTLAVPQYVYDA 126
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
G+ S +D+ + + +++YGIE GN+GNQ I MI+++ F L + LI++SE +++
Sbjct: 127 GVTSVEDLDAHADKFDSRLYGIEAGNDGNQIIQQMIDDDAFGLGDWSLIDSSESGMLAEL 186
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF--GEASVYTVVRSDYLDKCPNI 241
++ VFL WEPHP+N++ + YL G ++ G G A+VYT R+ Y + C N+
Sbjct: 187 NSRTQSEEWMVFLGWEPHPMNTNYEMAYLEGADDYFGPNLGGATVYTNTRAGYAEACGNV 246
Query: 242 SRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSR 301
LL N+ F++++ENE+M I+++ +D + RT L+ +P +L WL GVTT +G+
Sbjct: 247 GELLNNLSFTLSMENEIMGAIMDDGEDPRDAARTWLQNNPSVLDEWLQGVTTVEGEPGLA 306
Query: 302 QLERFMN 308
+++ ++
Sbjct: 307 AVKKALD 313
>gi|218675843|ref|YP_002394662.1| Substrate binding protein precursor [Vibrio splendidus LGP32]
gi|218324111|emb|CAV25281.1| Substrate binding protein precursor [Vibrio splendidus LGP32]
Length = 323
Score = 245 bits (624), Expect = 7e-63, Method: Composition-based stats.
Identities = 128/309 (41%), Positives = 196/309 (63%), Gaps = 3/309 (0%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+ A+ + F + + + C VRFAD GWTDI ATTA+TS +L+ LGYKT L
Sbjct: 12 KTLTALAISSFAFGANASVEPQQCENVRFADVGWTDITATTAVTSELLK-GLGYKTKTDL 70
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
L+VPVT+ S+ N ID+F+G W P++E IA Y E G+++ V NL+GAKY LAV +
Sbjct: 71 LSVPVTYSSMANGDIDVFLGNWMPTMEGDIAKYREAGTVETVRANLEGAKYTLAVPKYVY 130
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
G+KS+ D+AK+ + +IYGIEPGN+GN+ I MI+ + F LK F L+E+SE S
Sbjct: 131 DSGVKSFADLAKHADKFKDRIYGIEPGNDGNRLIQSMIDADAFGLKDFSLVESSEAGMVS 190
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCP 239
Q+ R R + V+L W PHP+NS++ + YL GG++ +G A+VYT VRS+YL +C
Sbjct: 191 QVSRAARRSQWIVYLGWAPHPMNSNVEMEYLSGGDDFFGPNYGGANVYTNVRSNYLSECA 250
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDP 299
N+ +LL+N++F++ +EN++M+ ILN K + + L +P ++ WL V T G+
Sbjct: 251 NVGQLLQNLEFTLEMENQLMEEILNQKVKPEKAAQQWLNNNPQQVEAWLDNVKTHKGESA 310
Query: 300 SRQLERFMN 308
++ + ++
Sbjct: 311 TQAVTEYLK 319
>gi|158422809|ref|YP_001524101.1| glycine betaine/L-proline ABC transporter [Azorhizobium caulinodans
ORS 571]
gi|158329698|dbj|BAF87183.1| glycine betaine/L-proline ABC transporter [Azorhizobium caulinodans
ORS 571]
Length = 362
Score = 245 bits (624), Expect = 8e-63, Method: Composition-based stats.
Identities = 136/306 (44%), Positives = 197/306 (64%), Gaps = 3/306 (0%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
+ L + A DA +C VRFAD GWTDIAATTA+TS +L+ LGY ++LAV
Sbjct: 57 IGAALCGLAAPAARAADAAACKTVRFADVGWTDIAATTAITSALLK-GLGYTPKTQVLAV 115
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
PVT+ S+KNK ID+F+G W P++E PY+++ S+++V NL GAKY LAV + G
Sbjct: 116 PVTYTSMKNKDIDVFLGNWMPTMEADRKPYIDDKSVEVVGANLDGAKYTLAVPTYLYDSG 175
Query: 125 IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
+K++ DIAK+K +L KIYGIEPGN+GN+ I+ MI +N F L F ++E+SE SQ+
Sbjct: 176 LKTFADIAKFKDKLKGKIYGIEPGNDGNRLIMGMIKDNAFGLGKFEIVESSEQGMLSQVD 235
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF--GEASVYTVVRSDYLDKCPNIS 242
R + P VFL WEPHP+N+ +I YL GG+++ G G A++YT VR+ ++ +CPN +
Sbjct: 236 RATKRKEPIVFLGWEPHPMNTKFSIKYLEGGDDVFGPNLGGATIYTNVRAGWMGECPNAA 295
Query: 243 RLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQ 302
L+KN+KF++ LEN +M IL + D L+ +P + WL GVTTFDG+
Sbjct: 296 TLIKNLKFTLPLENTVMGYILFDSMDADKAAEKWLKANPKAWEPWLQGVTTFDGKPGLAA 355
Query: 303 LERFMN 308
++ +
Sbjct: 356 VKASLK 361
>gi|163801662|ref|ZP_02195560.1| predicted cytoplasmic sugar-binding protein [Vibrio sp. AND4]
gi|159174579|gb|EDP59381.1| predicted cytoplasmic sugar-binding protein [Vibrio sp. AND4]
Length = 312
Score = 245 bits (624), Expect = 9e-63, Method: Composition-based stats.
Identities = 136/310 (43%), Positives = 197/310 (63%), Gaps = 3/310 (0%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M + + + +S A+ C VRFAD GWTDI ATTA+TS +L+ LGYKT
Sbjct: 1 MSTMTKIYSSIALSVVSTGTYANQCETVRFADVGWTDITATTAVTSELLK-GLGYKTKTD 59
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
LL+VPVT+ S+ N ID+F+G W P++E IA Y E G+++ V NL+GAKY LAV
Sbjct: 60 LLSVPVTYSSMANGDIDVFLGNWMPTMEGDIAKYREAGTVETVRANLEGAKYTLAVPKYV 119
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ G+KS+ D+AK + +IYGIEPGN+GN+ I DMI+++ F LK F L+E+SE
Sbjct: 120 YDAGVKSFADLAKNADKFKDRIYGIEPGNDGNRLIQDMIDSDAFGLKDFSLVESSEAGMV 179
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKC 238
SQ+ R R N V+L W PHP+NS++ + YL GG++ +G A+VYT VR DYL +C
Sbjct: 180 SQVSRAARRNQWIVYLGWAPHPMNSNVEMEYLSGGDDFFGPNYGGANVYTNVRQDYLSEC 239
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
N+ +LLKN++F++ +EN++M+ ILN KQ + L +P + WL GV T DG+D
Sbjct: 240 QNVGQLLKNLEFNLEMENQLMEAILNQKQKPAKAAQEWLNANPQQFEAWLEGVKTLDGKD 299
Query: 299 PSRQLERFMN 308
+ + ++
Sbjct: 300 AKQAMASYLK 309
>gi|294852894|ref|ZP_06793567.1| glycine betaine/proline transport system substrate-binding protein
[Brucella sp. NVSL 07-0026]
gi|294821483|gb|EFG38482.1| glycine betaine/proline transport system substrate-binding protein
[Brucella sp. NVSL 07-0026]
Length = 315
Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats.
Identities = 136/314 (43%), Positives = 198/314 (63%), Gaps = 8/314 (2%)
Query: 1 MYKILAVCLFLTTFSISY-----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M+ + + T +S A + SC+ VRF+D GWTDI +TTA+ + IL+ LGY
Sbjct: 1 MFTLALGGFAMGTAMLSTPEIGLAAEPASCSTVRFSDVGWTDITSTTAVATEILK-GLGY 59
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
T+IK+L+VPVT+ SL K ID+F+GYW PS+ + PYL+ +++ + NL GAKY LA
Sbjct: 60 TTDIKVLSVPVTYASLAKKDIDVFLGYWNPSMSADLQPYLDNKTVETLRTNLTGAKYTLA 119
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
V F G+K ++DIAK+K +LG KIYGIEPGN+GN+ IL MIN N F LK F L E+S
Sbjct: 120 VPQFVFDEGLKDFKDIAKFKDKLGGKIYGIEPGNDGNRLILSMINKNAFGLKSFELAESS 179
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF--GEASVYTVVRSD 233
E +Q+ R ++ P VFL+WEPHP+N I YL GG++ G G A V T VR+
Sbjct: 180 EQGMLAQVARSIKSKEPIVFLAWEPHPMNKRFKIAYLTGGDDFFGPNLGGAKVETNVRTG 239
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
Y +CPN+ + L N++F++ +EN++M IL++ ++ L+ +P +L WL GVTT
Sbjct: 240 YTQECPNVGKFLTNLEFNLDMENDIMGKILDDGEEPAKAATEWLKANPGVLNQWLAGVTT 299
Query: 294 FDGQDPSRQLERFM 307
DG++ + +
Sbjct: 300 VDGKEGLPAVRSAL 313
>gi|254708547|ref|ZP_05170375.1| glycine betaine/L-proline-binding protein PROX [Brucella
pinnipedialis M163/99/10]
Length = 312
Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats.
Identities = 136/302 (45%), Positives = 195/302 (64%), Gaps = 3/302 (0%)
Query: 8 CLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVT 67
L+T I A + SC+ VRF+D GWTDI +TTA+ + IL+ LGY T+IK+L+VPVT
Sbjct: 10 TAMLSTPEIGLAAEPASCSTVRFSDVGWTDITSTTAVATEILK-GLGYTTDIKVLSVPVT 68
Query: 68 FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKS 127
+ SL K ID+F+GYW PS+ + PYL+ +++ + NL GAKY LAV F G+K
Sbjct: 69 YASLAKKDIDVFLGYWNPSMSADLQPYLDNKTVETLRTNLTGAKYTLAVPQFVFDEGLKD 128
Query: 128 YQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQ 187
++DIAK+K +LG KIYGIEPGN+GN+ IL MIN N F LK F L E+SE +Q+ R
Sbjct: 129 FKDIAKFKDKLGGKIYGIEPGNDGNRLILSMINKNAFGLKSFELAESSEQGMLAQVARSI 188
Query: 188 RNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF--GEASVYTVVRSDYLDKCPNISRLL 245
++ P VFL+WEPHP+N I YL GG++ G G A V T VR+ Y +CPN+ + L
Sbjct: 189 KSKEPIVFLAWEPHPMNKRFKIAYLTGGDDFFGPNLGGAKVETNVRTGYTQECPNVGKFL 248
Query: 246 KNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLER 305
N++F++ +EN++M IL++ ++ L+ +P +L WL GVTT DG++ +
Sbjct: 249 TNLEFNLDMENDIMGKILDDGEEPAKAATEWLKANPGVLNQWLAGVTTVDGKEGLPAVRS 308
Query: 306 FM 307
+
Sbjct: 309 AL 310
>gi|62290460|ref|YP_222253.1| glycine betaine/L-proline ABC transporter periplasmic glycine
betaine-binding protein [Brucella abortus bv. 1 str.
9-941]
gi|82700383|ref|YP_414957.1| glycine betaine ABC transporter substrate-binding protein [Brucella
melitensis biovar Abortus 2308]
gi|189024690|ref|YP_001935458.1| Substrate-binding region of ABC-type glycine betaine transport
system [Brucella abortus S19]
gi|254689761|ref|ZP_05153015.1| Substrate-binding region of ABC-type glycine betaine transport
system [Brucella abortus bv. 6 str. 870]
gi|254697905|ref|ZP_05159733.1| Substrate-binding region of ABC-type glycine betaine transport
system [Brucella abortus bv. 2 str. 86/8/59]
gi|254730795|ref|ZP_05189373.1| Substrate-binding region of ABC-type glycine betaine transport
system [Brucella abortus bv. 4 str. 292]
gi|256258013|ref|ZP_05463549.1| Substrate-binding region of ABC-type glycine betaine transport
system [Brucella abortus bv. 9 str. C68]
gi|260884308|ref|ZP_05895922.1| glycine betaine/L-proline ABC transporter periplasmic glycine
betaine-binding protein [Brucella abortus bv. 9 str.
C68]
gi|297248845|ref|ZP_06932563.1| glycine betaine/proline transport system substrate-binding protein
[Brucella abortus bv. 5 str. B3196]
gi|62196592|gb|AAX74892.1| hypothetical glycine betaine/L-proline ABC transporter, periplasmic
glycine betaine-binding protein [Brucella abortus bv. 1
str. 9-941]
gi|82616484|emb|CAJ11549.1| Substrate-binding region of ABC-type glycine betaine transport
system [Brucella melitensis biovar Abortus 2308]
gi|189020262|gb|ACD72984.1| Substrate-binding region of ABC-type glycine betaine transport
system [Brucella abortus S19]
gi|260873836|gb|EEX80905.1| glycine betaine/L-proline ABC transporter periplasmic glycine
betaine-binding protein [Brucella abortus bv. 9 str.
C68]
gi|297176014|gb|EFH35361.1| glycine betaine/proline transport system substrate-binding protein
[Brucella abortus bv. 5 str. B3196]
Length = 322
Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats.
Identities = 136/314 (43%), Positives = 198/314 (63%), Gaps = 8/314 (2%)
Query: 1 MYKILAVCLFLTTFSISY-----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M+ + + T +S A + SC+ VRF+D GWTDI +TTA+ + IL+ LGY
Sbjct: 8 MFTLALGGFAMGTAMLSTPEIGLAAEPASCSTVRFSDVGWTDITSTTAVATEILK-GLGY 66
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
T+IK+L+VPVT+ SL K ID+F+GYW PS+ + PYL+ +++ + NL GAKY LA
Sbjct: 67 TTDIKVLSVPVTYASLAKKDIDVFLGYWNPSMSADLQPYLDNKTVETLRTNLTGAKYTLA 126
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
V F G+K ++DIAK+K +LG KIYGIEPGN+GN+ IL MIN N F LK F L E+S
Sbjct: 127 VPQFVFDEGLKDFKDIAKFKDKLGGKIYGIEPGNDGNRLILSMINKNAFGLKSFELAESS 186
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF--GEASVYTVVRSD 233
E +Q+ R ++ P VFL+WEPHP+N I YL GG++ G G A V T VR+
Sbjct: 187 EQGMLAQVARSIKSKEPIVFLAWEPHPMNKRFKIAYLTGGDDFFGPNLGGAKVETNVRTG 246
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
Y +CPN+ + L N++F++ +EN++M IL++ ++ L+ +P +L WL GVTT
Sbjct: 247 YTQECPNVGKFLTNLEFNLDMENDIMGKILDDGEEPAKAATEWLKANPGVLNQWLAGVTT 306
Query: 294 FDGQDPSRQLERFM 307
DG++ + +
Sbjct: 307 VDGKEGLPAVRLAL 320
>gi|84386104|ref|ZP_00989133.1| putative glycine betaine-binding ABC transporter [Vibrio splendidus
12B01]
gi|84378874|gb|EAP95728.1| putative glycine betaine-binding ABC transporter [Vibrio splendidus
12B01]
Length = 323
Score = 244 bits (622), Expect = 1e-62, Method: Composition-based stats.
Identities = 128/309 (41%), Positives = 197/309 (63%), Gaps = 3/309 (0%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+ A+ + F + + + C VRFAD GWTDI ATTA+TS +L+ LGYKT L
Sbjct: 12 KTLTALAISSFAFGANASIEPQQCENVRFADVGWTDITATTAVTSELLK-GLGYKTKTDL 70
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
L+VPVT+ S+ N ID+F+G W P++E IA Y E G+++ V NL+GAKY LAV +
Sbjct: 71 LSVPVTYSSMANGDIDVFLGNWMPTMEGDIAKYREAGTVETVRANLEGAKYTLAVPKYVY 130
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
G+KS+ D+AK+ + +IYGIEPGN+GN+ I MI+++ F LK F L+E+SE S
Sbjct: 131 DSGVKSFADLAKHADKFKDRIYGIEPGNDGNRLIQSMIDSDAFGLKDFSLVESSEAGMVS 190
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCP 239
Q+ R R + V+L W PHP+NS++ + YL GG++ +G A+VYT VRS+YL +C
Sbjct: 191 QVSRAARRSQWIVYLGWAPHPMNSNVEMEYLSGGDDFFGPNYGGANVYTNVRSNYLSECA 250
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDP 299
N+ +LL+N++F++ +EN++M+ ILN K + + L +P ++ WL V T G+
Sbjct: 251 NVGQLLQNLEFTLEMENQLMEEILNQKVKPEKAAQQWLNKNPQQVEAWLDNVKTHKGESA 310
Query: 300 SRQLERFMN 308
++ + ++
Sbjct: 311 TQAVTEYLK 319
>gi|261316047|ref|ZP_05955244.1| ABC transporter [Brucella pinnipedialis M163/99/10]
gi|261305073|gb|EEY08570.1| ABC transporter [Brucella pinnipedialis M163/99/10]
Length = 310
Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats.
Identities = 136/302 (45%), Positives = 195/302 (64%), Gaps = 3/302 (0%)
Query: 8 CLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVT 67
L+T I A + SC+ VRF+D GWTDI +TTA+ + IL+ LGY T+IK+L+VPVT
Sbjct: 8 TAMLSTPEIGLAAEPASCSTVRFSDVGWTDITSTTAVATEILK-GLGYTTDIKVLSVPVT 66
Query: 68 FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKS 127
+ SL K ID+F+GYW PS+ + PYL+ +++ + NL GAKY LAV F G+K
Sbjct: 67 YASLAKKDIDVFLGYWNPSMSADLQPYLDNKTVETLRTNLTGAKYTLAVPQFVFDEGLKD 126
Query: 128 YQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQ 187
++DIAK+K +LG KIYGIEPGN+GN+ IL MIN N F LK F L E+SE +Q+ R
Sbjct: 127 FKDIAKFKDKLGGKIYGIEPGNDGNRLILSMINKNAFGLKSFELAESSEQGMLAQVARSI 186
Query: 188 RNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF--GEASVYTVVRSDYLDKCPNISRLL 245
++ P VFL+WEPHP+N I YL GG++ G G A V T VR+ Y +CPN+ + L
Sbjct: 187 KSKEPIVFLAWEPHPMNKRFKIAYLTGGDDFFGPNLGGAKVETNVRTGYTQECPNVGKFL 246
Query: 246 KNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLER 305
N++F++ +EN++M IL++ ++ L+ +P +L WL GVTT DG++ +
Sbjct: 247 TNLEFNLDMENDIMGKILDDGEEPAKAATEWLKANPGVLNQWLAGVTTVDGKEGLPAVRS 306
Query: 306 FM 307
+
Sbjct: 307 AL 308
>gi|237815969|ref|ZP_04594966.1| choline ABC transporter, periplasmic binding protein [Brucella
abortus str. 2308 A]
gi|237789267|gb|EEP63478.1| choline ABC transporter, periplasmic binding protein [Brucella
abortus str. 2308 A]
Length = 315
Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats.
Identities = 136/314 (43%), Positives = 198/314 (63%), Gaps = 8/314 (2%)
Query: 1 MYKILAVCLFLTTFSISY-----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M+ + + T +S A + SC+ VRF+D GWTDI +TTA+ + IL+ LGY
Sbjct: 1 MFTLALGGFAMGTAMLSTPEIGLAAEPASCSTVRFSDVGWTDITSTTAVATEILK-GLGY 59
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
T+IK+L+VPVT+ SL K ID+F+GYW PS+ + PYL+ +++ + NL GAKY LA
Sbjct: 60 TTDIKVLSVPVTYASLAKKDIDVFLGYWNPSMSADLQPYLDNKTVETLRTNLTGAKYTLA 119
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
V F G+K ++DIAK+K +LG KIYGIEPGN+GN+ IL MIN N F LK F L E+S
Sbjct: 120 VPQFVFDEGLKDFKDIAKFKDKLGGKIYGIEPGNDGNRLILSMINKNAFGLKSFELAESS 179
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF--GEASVYTVVRSD 233
E +Q+ R ++ P VFL+WEPHP+N I YL GG++ G G A V T VR+
Sbjct: 180 EQGMLAQVARSIKSKEPIVFLAWEPHPMNKRFKIAYLTGGDDFFGPNLGGAKVETNVRTG 239
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
Y +CPN+ + L N++F++ +EN++M IL++ ++ L+ +P +L WL GVTT
Sbjct: 240 YTQECPNVGKFLTNLEFNLDMENDIMGKILDDGEEPAKAATEWLKANPGVLNQWLAGVTT 299
Query: 294 FDGQDPSRQLERFM 307
DG++ + +
Sbjct: 300 VDGKEGLPAVRLAL 313
>gi|167034019|ref|YP_001669250.1| choline ABC transporter periplasmic binding protein [Pseudomonas
putida GB-1]
gi|166860507|gb|ABY98914.1| choline ABC transporter, periplasmic binding protein [Pseudomonas
putida GB-1]
Length = 315
Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats.
Identities = 128/306 (41%), Positives = 198/306 (64%), Gaps = 3/306 (0%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
+LA L + + + + A D +C V FA+ GW DIAATT + + +L + LGYKT ++L+
Sbjct: 9 VLAASLLVASIATAQASDPAACQTVNFAEVGWADIAATTGLATTVL-QGLGYKTKTQMLS 67
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+P+ +++++ K ID+++G W PS+ P+LE+GS++ V NL GAKY LAV D +
Sbjct: 68 IPMAYQAMEMKSIDVYLGAWMPSMAAISTPFLEKGSVERVRTNLTGAKYTLAVPDYAYEA 127
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
G+K ++DIA++K EL +IYGIE GN+GNQ I +I+ + + LKGFRL+++SE ++
Sbjct: 128 GLKRFEDIARFKDELQGRIYGIEAGNDGNQIIQGLIDKDSYGLKGFRLVDSSEAGMLVEV 187
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNI 241
RR R+ P VFL WEPHP+NS L++ YL GG+ +G A V T R + +CPN+
Sbjct: 188 RRAVRSKKPIVFLGWEPHPMNSQLSMRYLSGGDAEFGPNYGAAVVDTHTRKGFGQECPNV 247
Query: 242 SRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSR 301
LL + F + +E+++M ILN+KQ R L+ +P +L+NWL GVTTFDGQ +
Sbjct: 248 GALLSRMAFELGMESQIMGAILNDKQKPALASREWLKRNPQVLENWLAGVTTFDGQPGAS 307
Query: 302 QLERFM 307
+ ++
Sbjct: 308 AVRSYL 313
>gi|254503371|ref|ZP_05115522.1| putative ABC transporter, QAT family, substrate-binding protein
[Labrenzia alexandrii DFL-11]
gi|222439442|gb|EEE46121.1| putative ABC transporter, QAT family, substrate-binding protein
[Labrenzia alexandrii DFL-11]
Length = 314
Score = 242 bits (618), Expect = 4e-62, Method: Composition-based stats.
Identities = 147/308 (47%), Positives = 209/308 (67%), Gaps = 3/308 (0%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+ + L L S A + +SC VRF+D GWTDI ATTA T+V+L + LGY T IK+
Sbjct: 6 KLVSGLALGLMMTGTSLAAEPESCKTVRFSDVGWTDITATTAATTVVL-DALGYDTEIKI 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
L+VPVT+ SLKNK IDIF+G W P++E I Y E+GS++ V NL+GAKY LAV +
Sbjct: 65 LSVPVTYASLKNKDIDIFLGNWMPTMEGDIKAYREDGSVETVRANLEGAKYTLAVPQYTY 124
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
G+KS+QDIAK+K +L KIYGIEPGN+GN+ I+ MI+ N F L+GF ++E+SE +
Sbjct: 125 DKGLKSFQDIAKFKDDLDGKIYGIEPGNDGNRLIIGMIDENLFGLEGFEVVESSEQGMLA 184
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCP 239
Q+ R ++ + VFL WEPHP+N++ ++ YL GG+EI +G A+VYT VR+ Y +C
Sbjct: 185 QVSRAEKRDKDIVFLGWEPHPMNANFDMAYLEGGDEIFGPNYGGATVYTNVRAGYTSECA 244
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDP 299
N+ +LL N++FS+A+ENE+M ILN+ +D Q + L+ HP + WL GVTTFDG +
Sbjct: 245 NVGKLLNNLEFSLAMENEIMGAILNDGEDPQKAAKAWLKAHPATFEAWLDGVTTFDGGES 304
Query: 300 SRQLERFM 307
++ +
Sbjct: 305 FAAVKGDL 312
>gi|86144741|ref|ZP_01063073.1| putative glycine betaine-binding ABC transporter [Vibrio sp.
MED222]
gi|85837640|gb|EAQ55752.1| putative glycine betaine-binding ABC transporter [Vibrio sp.
MED222]
Length = 325
Score = 242 bits (618), Expect = 4e-62, Method: Composition-based stats.
Identities = 127/311 (40%), Positives = 194/311 (62%), Gaps = 5/311 (1%)
Query: 2 YKILAVCLFLTTFSISYARD--ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+ A+ + F+ C VRFAD GWTDI ATTA+TS +L+ LGYKT
Sbjct: 12 KTLTALAISSFAFAFGANASIEPQQCENVRFADVGWTDITATTAVTSELLK-GLGYKTKT 70
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
LL+VPVT+ S+ N ID+F+G W P++E IA Y E G+++ V NL+GAKY LAV
Sbjct: 71 DLLSVPVTYSSMANGDIDVFLGNWMPTMEGDIAKYREAGTVETVRANLEGAKYTLAVPKY 130
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+ G+KS+ D+AK+ + +IYGIEPGN+GN+ I MI+ + F LK F L+E+SE
Sbjct: 131 VYDSGVKSFADLAKHADKFKDRIYGIEPGNDGNRLIQSMIDADAFGLKDFSLVESSEAGM 190
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDK 237
SQ+ R R + V+L W PHP+NS++ + YL GG++ +G A+VYT VRS+Y+ +
Sbjct: 191 VSQVSRAARRSQWIVYLGWAPHPMNSNVEMEYLSGGDDFFGPNYGGANVYTNVRSNYVSE 250
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQ 297
C N+ +LL+N++F++ +EN++M+ ILN K + + L +P ++ WL V T G+
Sbjct: 251 CANVGQLLQNLEFTLEMENQLMEEILNQKVKPEKAAQQWLNNNPQQVEAWLENVKTHKGE 310
Query: 298 DPSRQLERFMN 308
++ + ++
Sbjct: 311 SAAQAVTEYLK 321
>gi|163843830|ref|YP_001628234.1| substrate-binding region of ABC-type glycine betaine transport
system [Brucella suis ATCC 23445]
gi|163674553|gb|ABY38664.1| Substrate-binding region of ABC-type glycine betaine transport
system [Brucella suis ATCC 23445]
Length = 322
Score = 242 bits (618), Expect = 4e-62, Method: Composition-based stats.
Identities = 136/302 (45%), Positives = 194/302 (64%), Gaps = 3/302 (0%)
Query: 8 CLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVT 67
L+T I A + SC+ VRF+D GWTDI +TTA+ + IL+ LGY T+IK+L+VPVT
Sbjct: 20 TAMLSTPEIGLAAEPASCSTVRFSDVGWTDITSTTAVATEILK-GLGYTTDIKVLSVPVT 78
Query: 68 FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKS 127
+ SL K ID+F+GYW PS+ + PYL+ +++ + NL GAKY LAV F G+K
Sbjct: 79 YASLAKKDIDVFLGYWNPSMSADLQPYLDNKTVETLRTNLTGAKYTLAVPQFVFDEGLKD 138
Query: 128 YQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQ 187
++DIAK+K +LG KIYGIEPGN+GN+ IL MIN N F LK F L E+SE +Q+ R
Sbjct: 139 FKDIAKFKDKLGGKIYGIEPGNDGNRLILSMINKNAFGLKSFELAESSEQGMLAQVARSI 198
Query: 188 RNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF--GEASVYTVVRSDYLDKCPNISRLL 245
++ P VFL+WEPHP+N I YL GG++ G G A V T VR+ Y +CPN+ + L
Sbjct: 199 KSKEPIVFLAWEPHPMNKRFKIAYLTGGDDFFGPNLGGAKVETNVRTGYTQECPNVGKFL 258
Query: 246 KNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLER 305
N++F++ +EN++M IL+ ++ L+ +P +L WL GVTT DG++ +
Sbjct: 259 TNLEFNLDMENDIMGKILDAGEEPAKAATEWLKANPGVLNQWLAGVTTVDGKEGLPAVRS 318
Query: 306 FM 307
+
Sbjct: 319 AL 320
>gi|90410102|ref|ZP_01218119.1| putative glycine betaine-binding ABC transporter [Photobacterium
profundum 3TCK]
gi|90329455|gb|EAS45712.1| putative glycine betaine-binding ABC transporter [Photobacterium
profundum 3TCK]
Length = 316
Score = 242 bits (616), Expect = 7e-62, Method: Composition-based stats.
Identities = 129/310 (41%), Positives = 197/310 (63%), Gaps = 3/310 (0%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+ + + L + A C VRF+D GWTDI ATTA+TS +L+ LGY+T+ +
Sbjct: 7 IKRTIISSTALLLSFSASTAFAAQCDTVRFSDVGWTDITATTAVTSEVLK-GLGYETSTQ 65
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
LL+VPVT+ ++ NK ID+F+G W P++E IA Y ++GS++ V NL+GAKY LAV
Sbjct: 66 LLSVPVTYSAMANKDIDVFLGNWMPTMEADIAKYHQDGSVETVRANLEGAKYTLAVPKYV 125
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ G++S+ D+AK+K E +IYGIEPGN+GN+ I DM++ N F LK FRL+E+SE
Sbjct: 126 YDAGVRSFADLAKHKDEFRGRIYGIEPGNDGNRLIQDMLDQNAFDLKSFRLVESSEAGMM 185
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKC 238
SQ++R FL W PHP+NS+ ++ YL GG++ +G ASV+T VR YL C
Sbjct: 186 SQVKRAVDREQWIAFLGWAPHPMNSNFDMVYLDGGDDFFGPNYGGASVHTNVRQGYLKTC 245
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
N+ +LL+N+ FS+ +E+++M IL++K + L+ +P +L+ WL VT DG +
Sbjct: 246 SNVGQLLQNLSFSLEMESQLMGNILDDKAKPDAAAKAWLKANPQILEQWLDKVTARDGSN 305
Query: 299 PSRQLERFMN 308
++ ++N
Sbjct: 306 ADEAVKTYLN 315
>gi|170695675|ref|ZP_02886818.1| choline ABC transporter, periplasmic binding protein [Burkholderia
graminis C4D1M]
gi|170139474|gb|EDT07659.1| choline ABC transporter, periplasmic binding protein [Burkholderia
graminis C4D1M]
Length = 314
Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats.
Identities = 135/313 (43%), Positives = 197/313 (62%), Gaps = 8/313 (2%)
Query: 1 MYKILAVCLFLTTFSI---SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M ++ A L + S + A + +C VRFAD GW+DIAATT + S +LE LGYK
Sbjct: 1 MKRLWAASLCALSVSSVTSAIAAEPAACRDVRFADVGWSDIAATTGLASTVLE-GLGYKP 59
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAV 116
+ +VP+TF +K+K ID+F+GYW P+++ I P+ + G + ++ NL GAKY LAV
Sbjct: 60 TKTIASVPITFAGVKSKQIDVFLGYWSPTMDPMIDPFKKAGQVNVLPTPNLTGAKYTLAV 119
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
D + GIKS+ DIAK +LG KIYGIEPGN+GN I MI++N++ L F+L+E+SE
Sbjct: 120 PDYAYQAGIKSFADIAKNYDKLGGKIYGIEPGNDGNALIKKMIDSNQYGLGKFKLVESSE 179
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDY 234
++ R R+ P VFL WEPHP+N + I YL GG+++ +GEA V TV +DY
Sbjct: 180 AGMLVEVNRSIRDKKPIVFLGWEPHPMNVQMKIDYLSGGDDVFGPNYGEAKVMTVTPTDY 239
Query: 235 LDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTF 294
+CPN+++L+ N+ F+ +EN +M I+ NK D R L+ +P +L WL GV TF
Sbjct: 240 ATRCPNVAKLVSNLHFTTDIENHVMMPIM-NKVDPNKAAREWLKANPAVLDQWLAGVKTF 298
Query: 295 DGQDPSRQLERFM 307
DG+D ++ F+
Sbjct: 299 DGKDGLPAVKAFV 311
>gi|307544452|ref|YP_003896931.1| ABC transporter periplasmic protein [Halomonas elongata DSM 2581]
gi|307216476|emb|CBV41746.1| ABC-type transport system periplasmic substrate-binding protein
[Halomonas elongata DSM 2581]
Length = 314
Score = 240 bits (612), Expect = 2e-61, Method: Composition-based stats.
Identities = 117/313 (37%), Positives = 192/313 (61%), Gaps = 7/313 (2%)
Query: 1 MYKI---LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M K+ LA F + S S A D DSC PVRFA+ GWTDI ATTA+T+ +LE +GY+T
Sbjct: 1 MNKMTMGLATAAFALSASPSMAAD-DSCQPVRFAEVGWTDITATTALTTEVLEA-MGYET 58
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
I ++VP+ + +KN D+F+G W PS+ PY+E G ++ + NL+GAKY LAV
Sbjct: 59 RIDTVSVPIAYSGMKNGDFDVFLGNWMPSMASISDPYVERGEVERLDANLEGAKYTLAVP 118
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
+ G+ S D+ + + +++GIE GN+GN+ I MI+++ F L ++L+++SE
Sbjct: 119 QYVYDAGVTSVADLDENAERFSHQLHGIEAGNDGNEMIQKMIDDDAFGLGDWQLVDSSEA 178
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF--GEASVYTVVRSDYL 235
++++ + VFL WEPHP+N++ ++ YL G ++ G G A+VYT R+ Y
Sbjct: 179 GMLAELKARVPDEKWMVFLGWEPHPMNTNFDMAYLEGADDYFGPNLGGATVYTNTRAGYT 238
Query: 236 DKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFD 295
+ CPN+ LL N+ F++ +EN++M I++ D + + L+ HP++L +WL GVTT
Sbjct: 239 EACPNVGNLLDNLSFTLEMENQLMGAIMDEGTDPRQAAKAYLQEHPEVLDSWLEGVTTKA 298
Query: 296 GQDPSRQLERFMN 308
G+ +++ ++
Sbjct: 299 GEPALPAVKQALS 311
>gi|237802386|ref|ZP_04590847.1| glycine betaine/L-proline ABC transporter periplasmic
substrate-binding protein [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331025243|gb|EGI05299.1| glycine betaine/L-proline ABC transporter periplasmic
substrate-binding protein [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 315
Score = 240 bits (611), Expect = 2e-61, Method: Composition-based stats.
Identities = 124/314 (39%), Positives = 190/314 (60%), Gaps = 8/314 (2%)
Query: 1 MY--KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K L + L ++ A + ++C V F+D GWTDI TTA+TS +LE LGYKT
Sbjct: 1 MKGSKSLLLAATLCMPVLAQAAEPEACHTVNFSDVGWTDITVTTAVTSAVLES-LGYKTK 59
Query: 59 IKLLAVPVTFRSLKNK-GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+++VPVT++SL + +D+F+G W P++E I PY E G+++ V NL+ AKY LAV
Sbjct: 60 TTMISVPVTYKSLADGKNMDVFLGNWMPTMENDIKPYREAGTVETVRANLENAKYTLAVP 119
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN--NNKFSLKGFRLIEAS 175
+ G+ + DI K+KKELG KIYGIEPGN+GN+ I MI+ GF+++E+S
Sbjct: 120 QELYDKGLHDFADIVKFKKELGGKIYGIEPGNDGNRLIQSMIDKNAFGLKDAGFKVVESS 179
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSD 233
E A SQ+ R + VFL WEPHP+N+ + YL GG++ +G+A++YT R
Sbjct: 180 EAAMLSQVDRAVKRKNDVVFLGWEPHPMNTRFKMKYLTGGDDFFGPNYGQATIYTNTRKG 239
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
Y +C N+ +LLKN+ F++ +E+ +M +L++K + ++ +P +L WL GVTT
Sbjct: 240 YSQECSNVGQLLKNLSFTLDMESTLMGNVLDDKMKPDAAAKAWIKKNPQVLDTWLAGVTT 299
Query: 294 FDGQDPSRQLERFM 307
DG+ + +
Sbjct: 300 VDGKPGLEAAKAKL 313
>gi|71736058|ref|YP_276847.1| glycine betaine/L-proline ABC transporter periplasmic
substrate-binding protein [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71556611|gb|AAZ35822.1| glycine betaine/L-proline ABC transporter, periplasmic
substrate-binding protein [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|320326407|gb|EFW82460.1| glycine betaine/L-proline ABC transporter, periplasmic
substrate-binding protein [Pseudomonas syringae pv.
glycinea str. B076]
gi|320330620|gb|EFW86598.1| glycine betaine/L-proline ABC transporter, periplasmic
substrate-binding protein [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330874163|gb|EGH08312.1| glycine betaine/L-proline ABC transporter periplasmic
substrate-binding protein [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 315
Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats.
Identities = 124/314 (39%), Positives = 190/314 (60%), Gaps = 8/314 (2%)
Query: 1 MY--KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K L + L ++ A + ++C V F+D GWTDI TTA+TS +LE LGY T
Sbjct: 1 MKGSKSLLLAATLCMPVLAQAAEPEACHTVNFSDVGWTDITVTTAVTSAVLES-LGYTTK 59
Query: 59 IKLLAVPVTFRSLKNK-GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+++VPVT++SL + +D+F+G W P++E I PY E G+++ V NL+ AKY LAV
Sbjct: 60 TTMISVPVTYKSLADGKNMDVFLGNWMPTMENDIKPYREAGTVETVRANLENAKYTLAVP 119
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN--NNKFSLKGFRLIEAS 175
+ G+ + DIAK+KKELG KIYGIEPGN+GN+ I MI+ GF+++E+S
Sbjct: 120 QALYDKGLHDFADIAKFKKELGGKIYGIEPGNDGNRLIQSMIDKNAFGLKDAGFKVVESS 179
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSD 233
E A SQ+ R + VFL WEPHP+N+ + YL GG++ +G+A++YT R
Sbjct: 180 EAAMLSQVDRAVKRKNDVVFLGWEPHPMNTRFKMKYLTGGDDFFGPNYGQATIYTNTRKG 239
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
Y +C N+ +LLKN+ F++ +E+ +M +L++K + ++ +P +L WL GVTT
Sbjct: 240 YSQECSNVGQLLKNLSFTLDMESTLMGNVLDDKMKPDAAAKAWIKKNPQVLDTWLSGVTT 299
Query: 294 FDGQDPSRQLERFM 307
DG+ + +
Sbjct: 300 VDGKPGLEAAKAKL 313
>gi|221200269|ref|ZP_03573311.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia multivorans CGD2M]
gi|221205949|ref|ZP_03578963.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia multivorans CGD2]
gi|221209307|ref|ZP_03582288.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia multivorans CGD1]
gi|221169995|gb|EEE02461.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia multivorans CGD1]
gi|221173961|gb|EEE06394.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia multivorans CGD2]
gi|221179610|gb|EEE12015.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia multivorans CGD2M]
Length = 316
Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats.
Identities = 129/315 (40%), Positives = 192/315 (60%), Gaps = 10/315 (3%)
Query: 1 MYKILAVCLFLTTFSISY-----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M ++L + + A D C VRFAD GW+DIAATT + S +L + LGY
Sbjct: 1 MKRLLIAAACGVGIAAAPVSTVYAADPPVCKNVRFADVGWSDIAATTGLASTML-QGLGY 59
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYML 114
+ +VP+TF +K+K ID+F+GYW P+++ I P+ + G+IK++A NL GAKY L
Sbjct: 60 NPTKTIASVPITFAGIKSKQIDVFLGYWSPTMDPIIQPFTKAGTIKVLATPNLTGAKYTL 119
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
AV D + G+KS+QDI KY +L KIYGIEPGN+GN I MI+ N+F L F+L+E+
Sbjct: 120 AVPDYVYQGGLKSFQDIQKYADKLNGKIYGIEPGNDGNALIKKMIDTNQFGLGKFKLVES 179
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRS 232
SE ++ R R+ VFL WEPHP+N + I YL GG+++ +GEA V T
Sbjct: 180 SEAGMLVEVNRAIRDKQWIVFLGWEPHPMNVQMKIDYLTGGDDVFGPNYGEAKVLTATPP 239
Query: 233 DYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVT 292
DY +CPN+++ + N++F+ ++EN +M I+ NK+D + L+ +P L WL GVT
Sbjct: 240 DYAQRCPNVAKFVSNLQFTTSIENHVMVPIM-NKEDPNKAAKEWLKANPQSLDKWLAGVT 298
Query: 293 TFDGQDPSRQLERFM 307
T DG+ ++ ++
Sbjct: 299 TIDGKPGLPAVKAYL 313
>gi|323530095|ref|YP_004232247.1| choline ABC transporter periplasmic-binding protein [Burkholderia
sp. CCGE1001]
gi|323387097|gb|ADX59187.1| choline ABC transporter, periplasmic binding protein [Burkholderia
sp. CCGE1001]
Length = 314
Score = 239 bits (609), Expect = 5e-61, Method: Composition-based stats.
Identities = 134/313 (42%), Positives = 195/313 (62%), Gaps = 8/313 (2%)
Query: 1 MYKILAVCLFLTTFSISY---ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M ++ A L + S A + +C VRFAD GW+DIAATT + S +LE LGYK
Sbjct: 1 MKRLWAASLCALSVSSVTSVVAAEPAACRDVRFADVGWSDIAATTGLASTVLE-GLGYKP 59
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAV 116
+ +VP+TF +K+K ID+F+GYW P+++ I P+ + G + ++ NL GAKY LAV
Sbjct: 60 TKTIASVPITFAGVKSKQIDVFLGYWSPTMDPMIDPFKKAGQVSVLPTPNLTGAKYTLAV 119
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
D + GIKS+ DIAK +LG KIYGIEPGN+GN I MI+ N++ L F+L+E+SE
Sbjct: 120 PDYAYQAGIKSFADIAKNYDKLGGKIYGIEPGNDGNALIKKMIDTNQYGLGKFKLVESSE 179
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDY 234
++ R R+ P VFL WEPHP+N + I YL GG+++ +GEA V TV +DY
Sbjct: 180 AGMLVEVNRAIRDKKPIVFLGWEPHPMNVQMKIDYLSGGDDVFGPNYGEAKVMTVTPTDY 239
Query: 235 LDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTF 294
+CPN+++L+ N+ F+ +EN +M I+ NK D R L+ +P +L WL GV TF
Sbjct: 240 STRCPNVAKLVSNLHFTTDIENHVMLPIM-NKVDPNKAAREWLKANPAVLDQWLAGVKTF 298
Query: 295 DGQDPSRQLERFM 307
DG+D ++ ++
Sbjct: 299 DGKDGLPAVKAYV 311
>gi|161520037|ref|YP_001583464.1| choline ABC transporter, periplasmic binding protein [Burkholderia
multivorans ATCC 17616]
gi|189353782|ref|YP_001949409.1| glycine betaine/proline transport system substrate-binding protein
[Burkholderia multivorans ATCC 17616]
gi|160344087|gb|ABX17172.1| choline ABC transporter, periplasmic binding protein [Burkholderia
multivorans ATCC 17616]
gi|189337804|dbj|BAG46873.1| glycine betaine/proline transport system substrate-binding protein
[Burkholderia multivorans ATCC 17616]
Length = 316
Score = 238 bits (608), Expect = 5e-61, Method: Composition-based stats.
Identities = 129/315 (40%), Positives = 192/315 (60%), Gaps = 10/315 (3%)
Query: 1 MYKILAVCLFLTTFSISY-----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M ++L + + A D C VRFAD GW+DIAATT + S +L + LGY
Sbjct: 1 MKRLLIAAACGVGIAAAPVSAVYAADPPVCKNVRFADVGWSDIAATTGLASTML-QGLGY 59
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYML 114
+ +VP+TF +K+K ID+F+GYW P+++ I P+ + G+IK++A NL GAKY L
Sbjct: 60 NPTKTIASVPITFAGIKSKQIDVFLGYWSPTMDPIIQPFTKAGTIKVLATPNLTGAKYTL 119
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
AV D + G+KS+QDI KY +L KIYGIEPGN+GN I MI+ N+F L F+L+E+
Sbjct: 120 AVPDYVYQGGLKSFQDIQKYADKLNGKIYGIEPGNDGNALIKKMIDTNQFGLGKFKLVES 179
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRS 232
SE ++ R R+ VFL WEPHP+N + I YL GG+++ +GEA V T
Sbjct: 180 SEAGMLVEVNRAIRDKQWIVFLGWEPHPMNVQMKIDYLTGGDDVFGPNYGEAKVLTATPP 239
Query: 233 DYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVT 292
DY +CPN+++ + N++F+ ++EN +M I+ NK+D + L+ +P L WL GVT
Sbjct: 240 DYAQRCPNVAKFVSNLQFTTSIENHVMVPIM-NKEDPNKAAKEWLKANPQSLDKWLAGVT 298
Query: 293 TFDGQDPSRQLERFM 307
T DG+ ++ ++
Sbjct: 299 TIDGKPGLPAVKAYL 313
>gi|330874756|gb|EGH08905.1| glycine betaine/L-proline ABC transporter periplasmic
substrate-binding protein [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 315
Score = 238 bits (608), Expect = 5e-61, Method: Composition-based stats.
Identities = 125/314 (39%), Positives = 191/314 (60%), Gaps = 8/314 (2%)
Query: 1 MY--KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K L + L ++ A + ++C V F+D GWTDI TTA+TS +LE LGYKT
Sbjct: 1 MKGSKSLLLAATLCMPVLAQAAEPEACHTVNFSDVGWTDITVTTAVTSAVLES-LGYKTK 59
Query: 59 IKLLAVPVTFRSLKNK-GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+++VPVT++SL + +D+F+G W P++E I PY E G+++ V NL+ AKY LAV
Sbjct: 60 TTMISVPVTYKSLADGKNMDVFLGNWMPTMENDIKPYREAGTVETVRANLENAKYTLAVP 119
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN--NNKFSLKGFRLIEAS 175
+ G+ + DIAK+KKELG KIYGIEPGN+GN+ I MI+ GF+++E+S
Sbjct: 120 QALYDKGLHDFADIAKFKKELGGKIYGIEPGNDGNRLIQSMIDKNAFGLKDAGFKVVESS 179
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSD 233
E A SQ+ R + VFL WEPHP+N+ + YL GG++ +G+A++YT R
Sbjct: 180 EAAMLSQVDRAVKRKNDVVFLGWEPHPMNTRFKMKYLTGGDDFFGPNYGQATIYTNTRKG 239
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
Y +C N+ +LLKN+ F++ +E+ +M +L++K + ++ +P +L WL GVTT
Sbjct: 240 YSQECSNVGQLLKNLSFTLEMESTLMGNVLDDKTKPDAAAKAWIKKNPQVLDTWLAGVTT 299
Query: 294 FDGQDPSRQLERFM 307
DG+ + +
Sbjct: 300 VDGKPGLEAAKAKL 313
>gi|239833440|ref|ZP_04681768.1| choline ABC transporter, periplasmic binding protein [Ochrobactrum
intermedium LMG 3301]
gi|239821503|gb|EEQ93072.1| choline ABC transporter, periplasmic binding protein [Ochrobactrum
intermedium LMG 3301]
Length = 336
Score = 238 bits (608), Expect = 5e-61, Method: Composition-based stats.
Identities = 130/312 (41%), Positives = 184/312 (58%), Gaps = 8/312 (2%)
Query: 1 MYKILAVCLFLTTFSI---SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M +IL + + A ++++C +F+D GWTDI ATTA+ S++LE+ GY+
Sbjct: 26 MKRILLLLAASVASLASVQAQAAESEACKSPKFSDVGWTDITATTALASLLLEKA-GYQP 84
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+L+VPVTF+SL+N IDIF+G W P E+ PY+E ++ NLQGAK LA
Sbjct: 85 QTTILSVPVTFQSLENGQIDIFLGNWMPLQEEARKPYIEGKKVEQAGVNLQGAKIGLA-- 142
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
G LGIK+Y DIAK+K +LG KIYGIE G+ N I MI +KF LK F+L E+SE
Sbjct: 143 ATGKDLGIKNYADIAKFKDQLGGKIYGIEAGSSANATIQSMIEKDKFGLKDFQLAESSEQ 202
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYL 235
A SQ++ R + P VF +W PHP+N + YL GE + G A+V T+ R Y
Sbjct: 203 AMLSQVQNAVRKDEPVVFFAWTPHPMNIRYKLTYLQNGENLFGPDDGAATVETLTRKGYA 262
Query: 236 DKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFD 295
CPN+SR L N+KFS +E+ MM +ILN+ + + ++ +P L WL GVTT D
Sbjct: 263 TDCPNVSRFLSNLKFSTEMESTMMNMILNDGMEAKDAVTKWIKDNPAQLDAWLDGVTTTD 322
Query: 296 GQDPSRQLERFM 307
G+ ++ +
Sbjct: 323 GKPALAAVKSGL 334
>gi|28867694|ref|NP_790313.1| glycine betaine/L-proline ABC transporter periplasmic
substrate-binding protein [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213967764|ref|ZP_03395911.1| glycine betaine/L-proline ABC transporter, periplasmic
substrate-binding protein [Pseudomonas syringae pv.
tomato T1]
gi|301382400|ref|ZP_07230818.1| glycine betaine/L-proline ABC transporter, periplasmic
substrate-binding protein [Pseudomonas syringae pv.
tomato Max13]
gi|302061207|ref|ZP_07252748.1| glycine betaine/L-proline ABC transporter, periplasmic
substrate-binding protein [Pseudomonas syringae pv.
tomato K40]
gi|302132421|ref|ZP_07258411.1| glycine betaine/L-proline ABC transporter, periplasmic
substrate-binding protein [Pseudomonas syringae pv.
tomato NCPPB 1108]
gi|28850929|gb|AAO54008.1| glycine betaine/L-proline ABC transporter, periplasmic
substrate-binding protein [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213927540|gb|EEB61088.1| glycine betaine/L-proline ABC transporter, periplasmic
substrate-binding protein [Pseudomonas syringae pv.
tomato T1]
gi|331015008|gb|EGH95064.1| glycine betaine/L-proline ABC transporter, periplasmic
substrate-binding protein [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 315
Score = 238 bits (608), Expect = 5e-61, Method: Composition-based stats.
Identities = 124/314 (39%), Positives = 190/314 (60%), Gaps = 8/314 (2%)
Query: 1 MY--KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K L + L ++ A + ++C V F+D GWTDI TTA+TS +LE LGYKT
Sbjct: 1 MKGSKSLLLAATLCMPVLAQAAEPEACHTVNFSDVGWTDITVTTAVTSAVLES-LGYKTK 59
Query: 59 IKLLAVPVTFRSLKNK-GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+++VPVT++SL + +D+F+G W P++E I PY E G+++ V NL+ AKY LAV
Sbjct: 60 TTMISVPVTYKSLADGKNMDVFLGNWMPTMENDIKPYREAGTVETVRANLENAKYTLAVP 119
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN--NNKFSLKGFRLIEAS 175
+ G+ + DI K+KKELG KIYGIEPGN+GN+ I MI+ GF+++E+S
Sbjct: 120 QALYDKGLHDFADITKFKKELGGKIYGIEPGNDGNRLIQSMIDKNAFGLKDAGFKVVESS 179
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSD 233
E A SQ+ R + VFL WEPHP+N+ + YL GG++ +G+A++YT R
Sbjct: 180 EAAMLSQVDRAVKRKNDVVFLGWEPHPMNTRFKMKYLTGGDDFFGPNYGQATIYTNTRKG 239
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
Y +C N+ +LLKN+ F++ +E+ +M +L++K + ++ +P +L WL GVTT
Sbjct: 240 YSQECSNVGQLLKNLSFTLEMESTLMGNVLDDKTKPDAAAKAWIKKNPQVLDTWLAGVTT 299
Query: 294 FDGQDPSRQLERFM 307
DG+ + +
Sbjct: 300 VDGKPGLEAAKAKL 313
>gi|149188393|ref|ZP_01866686.1| putative glycine betaine-binding ABC transporter [Vibrio shilonii
AK1]
gi|148837611|gb|EDL54555.1| putative glycine betaine-binding ABC transporter [Vibrio shilonii
AK1]
Length = 312
Score = 238 bits (608), Expect = 5e-61, Method: Composition-based stats.
Identities = 128/294 (43%), Positives = 194/294 (65%), Gaps = 3/294 (1%)
Query: 18 YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGID 77
A+ C VRFAD GWTDI ATTA+T+ +L+ +GYKT LL+VPVT+ S+ N ID
Sbjct: 18 MNAYANQCETVRFADVGWTDITATTAVTTELLK-GMGYKTKTDLLSVPVTYSSMANGDID 76
Query: 78 IFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKE 137
IF+G W P++E IA Y E +++ V NL+GAKY LAV + G+KS+ D+AK+ +
Sbjct: 77 IFLGNWMPTMEGDIAKYREAKTVETVRANLEGAKYTLAVPKYVYDAGVKSFADLAKHADK 136
Query: 138 LGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLS 197
+IYGIEPGN+GN+ I MI+++ F LK F L+E+SE SQ+ R R N V+L
Sbjct: 137 FRDRIYGIEPGNDGNRLIQSMIDSDAFGLKDFNLVESSEAGMVSQVSRAARRNQWIVYLG 196
Query: 198 WEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
W PHP+NS++ + YL GG++ +G A+VYT VR++YL +C N+ +LLKN++FS+ +E
Sbjct: 197 WAPHPMNSNIEMEYLSGGDDYFGPNYGGANVYTNVRANYLSECQNVGQLLKNLEFSLEME 256
Query: 256 NEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMNN 309
N++M+ ILN + ++ +P ++ WL GVTT G+D + ++ ++++
Sbjct: 257 NQLMEAILNQNVQPSKAAQQWMKANPKQVEAWLSGVTTLSGEDANAAVQSYIDS 310
>gi|330891304|gb|EGH23965.1| glycine betaine/L-proline ABC transporter periplasmic
substrate-binding protein [Pseudomonas syringae pv. mori
str. 301020]
Length = 315
Score = 238 bits (608), Expect = 6e-61, Method: Composition-based stats.
Identities = 124/314 (39%), Positives = 190/314 (60%), Gaps = 8/314 (2%)
Query: 1 MY--KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K L + L ++ A + ++C V F+D GWTDI TTA+TS +LE LGY T
Sbjct: 1 MKGPKSLLLAATLCMPVLAQAAEPEACHTVNFSDVGWTDITVTTAVTSAVLES-LGYTTK 59
Query: 59 IKLLAVPVTFRSLKNK-GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+++VPVT++SL + +D+F+G W P++E I PY E G+++ V NL+ AKY LAV
Sbjct: 60 TTMISVPVTYKSLADGKNMDVFLGNWMPTMENDIKPYREAGTVETVRANLENAKYTLAVP 119
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN--NNKFSLKGFRLIEAS 175
+ G+ + DIAK+KKELG KIYGIEPGN+GN+ I MI+ GF+++E+S
Sbjct: 120 QALYDKGLHDFADIAKFKKELGGKIYGIEPGNDGNRLIQSMIDKNAFGLKDAGFKVVESS 179
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSD 233
E A SQ+ R + VFL WEPHP+N+ + YL GG++ +G+A++YT R
Sbjct: 180 EAAMLSQVDRAVKRKNDVVFLGWEPHPMNTRFKMKYLTGGDDFFGPNYGQATIYTNTRKG 239
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
Y +C N+ +LLKN+ F++ +E+ +M +L++K + ++ +P +L WL GVTT
Sbjct: 240 YSQECSNVGQLLKNLSFTLDMESTLMGNVLDDKMKPDAAAKAWIKKNPQVLDTWLAGVTT 299
Query: 294 FDGQDPSRQLERFM 307
DG+ + +
Sbjct: 300 VDGKPGLEAAKAKL 313
>gi|298489208|ref|ZP_07007227.1| L-proline/glycine/betaine binding ABC transporter protein
[Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
gi|298156290|gb|EFH97391.1| L-proline/glycine/betaine binding ABC transporter protein
[Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
gi|330985872|gb|EGH83975.1| glycine betaine/L-proline ABC transporter periplasmic
substrate-binding protein [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 315
Score = 238 bits (608), Expect = 6e-61, Method: Composition-based stats.
Identities = 124/314 (39%), Positives = 190/314 (60%), Gaps = 8/314 (2%)
Query: 1 MY--KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K L + L ++ A + ++C V F+D GWTDI TTA+TS +LE LGY T
Sbjct: 1 MKGSKSLLLAATLCMPVLAQAAEPEACHTVNFSDVGWTDITVTTAVTSAVLES-LGYTTK 59
Query: 59 IKLLAVPVTFRSLKNK-GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+++VPVT++SL + +D+F+G W P++E I PY E G+++ V NL+ AKY LAV
Sbjct: 60 TTMISVPVTYKSLADGKNMDVFLGNWMPTMENDIKPYREAGTVETVRANLENAKYTLAVP 119
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN--NNKFSLKGFRLIEAS 175
+ G+ + DIAK+KKELG KIYGIEPGN+GN+ I MI+ GF+++E+S
Sbjct: 120 QALYDKGLHDFADIAKFKKELGGKIYGIEPGNDGNRLIQSMIDKNAFGLKDAGFKVVESS 179
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSD 233
E A SQ+ R + VFL WEPHP+N+ + YL GG++ +G+A++YT R
Sbjct: 180 EAAMLSQVDRAVKRKNDVVFLGWEPHPMNTRFKMKYLTGGDDFFGPNYGQATIYTNTRKG 239
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
Y +C N+ +LLKN+ F++ +E+ +M +L++K + ++ +P +L WL GVTT
Sbjct: 240 YSQECSNVGQLLKNLSFTLDMESTLMGNVLDDKMKPDAAAKAWIKKNPQVLDTWLAGVTT 299
Query: 294 FDGQDPSRQLERFM 307
DG+ + +
Sbjct: 300 VDGKPGLEAAKAKL 313
>gi|330965479|gb|EGH65739.1| glycine betaine/L-proline ABC transporter periplasmic
substrate-binding protein [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 315
Score = 238 bits (608), Expect = 6e-61, Method: Composition-based stats.
Identities = 124/314 (39%), Positives = 190/314 (60%), Gaps = 8/314 (2%)
Query: 1 MY--KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K L + L ++ A + ++C V F+D GWTDI TTA+TS +LE LGYKT
Sbjct: 1 MKGSKSLLLAATLCMPVLAQAAEPEACHTVNFSDVGWTDITVTTAVTSAVLES-LGYKTK 59
Query: 59 IKLLAVPVTFRSLKNK-GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+++VPVT++SL + +D+F+G W P++E I PY E G+++ V NL+ AKY LAV
Sbjct: 60 TTMISVPVTYKSLADGKNMDVFLGNWMPTMENDIKPYREAGTVETVRANLENAKYTLAVP 119
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN--NNKFSLKGFRLIEAS 175
+ G+ + DIAK+KKEL KIYGIEPGN+GN+ I MI+ GF+++E+S
Sbjct: 120 QALYDKGLHDFADIAKFKKELDGKIYGIEPGNDGNRLIQSMIDKNAFGLKDAGFKVVESS 179
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSD 233
E A SQ+ R + VFL WEPHP+N+ + YL GG++ +G+A++YT R
Sbjct: 180 EAAMLSQVDRAVKRKNDVVFLGWEPHPMNTRFKMKYLTGGDDFFGPNYGQATIYTNTRKG 239
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
Y +C N+ +LLKN+ F++ +E+ +M +L++K + ++ +P +L WL GVTT
Sbjct: 240 YSQECSNVGQLLKNLSFTLEMESTLMGNVLDDKTKPDAAAKAWIKKNPQVLDTWLAGVTT 299
Query: 294 FDGQDPSRQLERFM 307
DG+ + +
Sbjct: 300 VDGKPGLEAAKAKL 313
>gi|257483035|ref|ZP_05637076.1| glycine betaine/L-proline ABC transporter, periplasmic
substrate-binding protein [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|331011729|gb|EGH91785.1| glycine betaine/L-proline ABC transporter periplasmic
substrate-binding protein [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 315
Score = 238 bits (607), Expect = 7e-61, Method: Composition-based stats.
Identities = 124/314 (39%), Positives = 191/314 (60%), Gaps = 8/314 (2%)
Query: 1 MY--KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K L + L ++ A + ++C V F+D GWTDI TTA+TS +LE LGY T
Sbjct: 1 MKGSKSLLLAATLCMPVLAQAAEPEACHTVNFSDVGWTDITVTTAVTSAVLES-LGYTTK 59
Query: 59 IKLLAVPVTFRSLKNK-GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+++VPVT++SL + +D+F+G W P++E I PY E G+++ V +NL+ AKY LAV
Sbjct: 60 TTMISVPVTYKSLADGKNMDVFLGNWMPTMENDIKPYREAGTVETVRDNLENAKYTLAVP 119
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN--NNKFSLKGFRLIEAS 175
+ G+ + DIAK+KKELG KIYGIEPGN+GN+ I MI+ GF+++E+S
Sbjct: 120 QALYDKGLHDFADIAKFKKELGGKIYGIEPGNDGNRLIQSMIDKNAFGLKDAGFKVVESS 179
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSD 233
E A SQ+ R + VFL WEPHP+N+ + YL GG++ +G+A++YT R
Sbjct: 180 EAAMLSQVDRAVKRKNDVVFLGWEPHPMNTRFKMKYLTGGDDFFGPNYGQATIYTNTRKG 239
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
Y +C N+ +LLKN+ F++ +E+ +M +L++K + ++ +P +L WL GVTT
Sbjct: 240 YSQECSNVGQLLKNLSFTLDMESTLMGNVLDDKMKPDAAAKAWIKKNPQVLDTWLAGVTT 299
Query: 294 FDGQDPSRQLERFM 307
DG+ + +
Sbjct: 300 VDGKPGLEAAKAKL 313
>gi|289624805|ref|ZP_06457759.1| glycine betaine/L-proline ABC transporter, periplasmic
substrate-binding protein [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289650618|ref|ZP_06481961.1| glycine betaine/L-proline ABC transporter, periplasmic
substrate-binding protein [Pseudomonas syringae pv.
aesculi str. 2250]
gi|330871165|gb|EGH05874.1| glycine betaine/L-proline ABC transporter periplasmic
substrate-binding protein [Pseudomonas syringae pv.
aesculi str. 0893_23]
Length = 315
Score = 238 bits (607), Expect = 7e-61, Method: Composition-based stats.
Identities = 124/314 (39%), Positives = 190/314 (60%), Gaps = 8/314 (2%)
Query: 1 MY--KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K L + L ++ A + ++C V F+D GWTDI TTA+TS +LE LGY T
Sbjct: 1 MKGSKSLLLAATLCMPVLAQAAEPEACHTVNFSDVGWTDITVTTAVTSAVLES-LGYTTK 59
Query: 59 IKLLAVPVTFRSLKNK-GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+++VPVT++SL + +D+F+G W P++E I PY E G+++ V NL+ AKY LAV
Sbjct: 60 TTMISVPVTYKSLADGKNMDVFLGNWMPTMENDIKPYREAGTVETVRANLENAKYTLAVP 119
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN--NNKFSLKGFRLIEAS 175
+ G+ + DIAK+KKELG KIYGIEPGN+GN+ I MI+ GF+++E+S
Sbjct: 120 QALYDKGLHDFADIAKFKKELGDKIYGIEPGNDGNRLIQSMIDKNAFGLKDAGFKVVESS 179
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSD 233
E A SQ+ R + VFL WEPHP+N+ + YL GG++ +G+A++YT R
Sbjct: 180 EAAMLSQVDRAVKRKNDVVFLGWEPHPMNTRFKMKYLTGGDDFFGPNYGQATIYTNTRKG 239
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
Y +C N+ +LLKN+ F++ +E+ +M +L++K + ++ +P +L WL GVTT
Sbjct: 240 YSQECSNVGQLLKNLSFTLDMESTLMGNVLDDKMKPDAAAKAWIKKNPQVLDTWLAGVTT 299
Query: 294 FDGQDPSRQLERFM 307
DG+ + +
Sbjct: 300 VDGKPGLEAAKAKL 313
>gi|54303411|ref|YP_133404.1| putative glycine betaine-binding ABC transporter [Photobacterium
profundum SS9]
gi|46916841|emb|CAG23604.1| putative glycine betaine-binding ABC transporter [Photobacterium
profundum SS9]
Length = 316
Score = 238 bits (607), Expect = 8e-61, Method: Composition-based stats.
Identities = 129/310 (41%), Positives = 196/310 (63%), Gaps = 3/310 (0%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+ + L + A C VRF+D GWTDI ATTA+TS +L+ LGY+T+ +
Sbjct: 7 IKHTIISSTALLLSFSASTAFAAQCDTVRFSDVGWTDITATTAVTSEVLK-GLGYQTSTQ 65
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
LL+VPVT+ ++ NK ID+F+G W P++E IA Y ++GS++ V NL+GAKY LAV
Sbjct: 66 LLSVPVTYSAMANKDIDVFLGNWMPTMEADIAKYHQDGSVETVRANLEGAKYTLAVPKYV 125
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ G++S+ D+AK+K E +IYGIEPGN+GN+ I DM++ N F LK FRL+E+SE
Sbjct: 126 YDAGVRSFADLAKHKDEFRGRIYGIEPGNDGNRLIQDMLDQNAFDLKSFRLVESSEAGMM 185
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKC 238
SQ++R FL W PHP+NS+ ++ YL GG++ +G ASV+T VR YL C
Sbjct: 186 SQVKRAVDREQWIAFLGWAPHPMNSNFDMVYLDGGDDFFGPNYGGASVHTNVRQGYLKTC 245
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
N+ +LL+N+ FS+ +E+++M IL++K + L+ +P +L+ WL VT DG +
Sbjct: 246 SNVGQLLQNLSFSLEMESQLMGNILDDKAKPDAAAKAWLKANPQILEQWLDKVTARDGSN 305
Query: 299 PSRQLERFMN 308
++ ++N
Sbjct: 306 ADEAVKTYLN 315
>gi|289672389|ref|ZP_06493279.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. syringae FF5]
gi|302188552|ref|ZP_07265225.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. syringae 642]
Length = 315
Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats.
Identities = 125/314 (39%), Positives = 192/314 (61%), Gaps = 8/314 (2%)
Query: 1 MY--KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K L + L ++ A + ++C V F+D GWTDI TTA+TS +LE LGYKT
Sbjct: 1 MKGSKSLLLAATLCMPVLAQAAEPEACHTVNFSDVGWTDITVTTAVTSAVLES-LGYKTK 59
Query: 59 IKLLAVPVTFRSLKNK-GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+++VPVT++SL + +D+F+G W P++E I PY E G+++ V NL+ AKY LAV
Sbjct: 60 TTMISVPVTYKSLADGKNMDVFLGNWMPTMENDIKPYREAGTVETVRANLENAKYTLAVP 119
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN--NNKFSLKGFRLIEAS 175
+ + G+ + DIAK+KKELG KIYGIEPGN+GN+ I MI+ GF+++E+S
Sbjct: 120 EALYDKGLHDFADIAKFKKELGGKIYGIEPGNDGNRLIQSMIDKNAFGLKDAGFKVVESS 179
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSD 233
E A SQ+ R + VFL WEPHP+N+ + YL GG++ +G+A++YT R
Sbjct: 180 EAAMLSQVDRAVKRKNDVVFLGWEPHPMNTRFKMKYLTGGDDFFGPNYGQATIYTNTRKG 239
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
Y +C N+ +LLKN+ F++ +E+ +M +L++K + ++ +P +L WL GVTT
Sbjct: 240 YSQECSNVGQLLKNLSFTLNMESTLMGNVLDDKMKPDAAAKAWIKKNPQVLDTWLAGVTT 299
Query: 294 FDGQDPSRQLERFM 307
DG+ + +
Sbjct: 300 VDGKPGLEAAKAKL 313
>gi|307727850|ref|YP_003911063.1| choline ABC transporter periplasmic-binding protein [Burkholderia
sp. CCGE1003]
gi|307588375|gb|ADN61772.1| choline ABC transporter, periplasmic binding protein [Burkholderia
sp. CCGE1003]
Length = 320
Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats.
Identities = 133/319 (41%), Positives = 197/319 (61%), Gaps = 14/319 (4%)
Query: 1 MYKILAVCLFLTTF---------SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEE 51
M ++ A L + + + A + +C VRFAD GW+DIAATT + S ILE
Sbjct: 1 MKRLWAASLCALSVSSALSALSVTPAVAAEPAACRSVRFADVGWSDIAATTGLASTILE- 59
Query: 52 ILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGA 110
LGYK + +VP+TF +K+K ID+F+GYW P+++ I P+ + G + ++ NL GA
Sbjct: 60 GLGYKPTKTIASVPITFAGVKSKQIDVFLGYWSPTMDPMIDPFRKAGQVNVLPTPNLTGA 119
Query: 111 KYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
KY LAV D + GIKS+ DIAK ++L KIYGIEPGN+GN I MI++N++ L F+
Sbjct: 120 KYTLAVPDYAYQAGIKSFADIAKNYEKLDGKIYGIEPGNDGNALIKKMIDSNQYGLGKFK 179
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYT 228
L+E+SE ++ R R+ P VFL WEPHP+N + I YL GG+++ +GEA V T
Sbjct: 180 LVESSEAGMLVEVNRAIRDRKPIVFLGWEPHPMNVQMKIDYLSGGDDVFGPNYGEAKVMT 239
Query: 229 VVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
V +DY +CPN+++L+ N+ F+ +EN +M I+ NK D R L+ +P +L WL
Sbjct: 240 VTPTDYAARCPNVAKLVSNLHFTTDIENHVMLPIM-NKTDPNKAAREWLKANPAILDQWL 298
Query: 289 IGVTTFDGQDPSRQLERFM 307
GV TFDG+D ++ ++
Sbjct: 299 AGVKTFDGKDGLPAVKAYV 317
>gi|330979967|gb|EGH78237.1| glycine betaine/L-proline ABC transporter periplasmic
substrate-binding protein [Pseudomonas syringae pv.
aptata str. DSM 50252]
Length = 315
Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats.
Identities = 124/314 (39%), Positives = 191/314 (60%), Gaps = 8/314 (2%)
Query: 1 MY--KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K L + L ++ A + ++C V F+D GWTDI TTA+TS +LE LGYKT
Sbjct: 1 MKGSKSLLLAATLCMPVLAQAAEPEACHTVNFSDVGWTDITVTTAVTSAVLES-LGYKTK 59
Query: 59 IKLLAVPVTFRSLKNK-GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+++VPVT++SL + +D+F+G W P++E I PY E G+++ V NL+ AKY LAV
Sbjct: 60 TTMISVPVTYKSLADGKNMDVFLGNWMPTMENDIKPYREAGTVETVRANLENAKYTLAVP 119
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN--NNKFSLKGFRLIEAS 175
+ + G+ + DI K+KKELG KIYGIEPGN+GN+ I MI+ GF+++E+S
Sbjct: 120 EALYDKGLHDFADITKFKKELGGKIYGIEPGNDGNRLIQSMIDKNAFGLKDAGFKVVESS 179
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSD 233
E A SQ+ R + VFL WEPHP+N+ + YL GG++ +G+A++YT R
Sbjct: 180 EAAMLSQVDRAVKRKNDVVFLGWEPHPMNTRFKMKYLTGGDDFFGPNYGQATIYTNTRKG 239
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
Y +C N+ +LLKN+ F++ +E+ +M +L++K + ++ +P +L WL GVTT
Sbjct: 240 YSQECSNVGQLLKNLSFTLNMESTLMGNVLDDKMKPDAAAKAWIKKNPQVLDTWLAGVTT 299
Query: 294 FDGQDPSRQLERFM 307
DG+ + +
Sbjct: 300 VDGKPGLEAAKAKL 313
>gi|328545185|ref|YP_004305294.1| Choline ABC transporter periplasmic binding protein [polymorphum
gilvum SL003B-26A1]
gi|326414927|gb|ADZ71990.1| Choline ABC transporter, periplasmic binding protein [Polymorphum
gilvum SL003B-26A1]
Length = 314
Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats.
Identities = 143/308 (46%), Positives = 204/308 (66%), Gaps = 3/308 (0%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
I LFL + + A + SC VRF+D GWTDI ATTA + +L + LGY T IK+
Sbjct: 6 KTIAGGALFLAMTAGALAAEPASCKTVRFSDVGWTDITATTAAATTVL-QALGYDTEIKI 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
L+VPVT+ SLKNK ID+F+G W P++E IAPY E+GS++ V NL+GAKY LAV +
Sbjct: 65 LSVPVTYASLKNKDIDVFLGNWMPTMEADIAPYREDGSVETVGVNLEGAKYTLAVPKYTY 124
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
G++S+ DIA +K L KIYGIEPGN+GN+ I+DMI+ + F LKGF+++E+SE +
Sbjct: 125 DKGLRSFADIAAFKDSLDGKIYGIEPGNDGNRLIIDMIDQDSFGLKGFQVVESSEQGMLA 184
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCP 239
Q+ R R N VFL WEPHP+N++ ++ YL GG+++ +G A+VYT VR+ YLD+CP
Sbjct: 185 QVARATRRNEDIVFLGWEPHPMNANFDMAYLDGGDDVFGPDYGGATVYTNVRAGYLDECP 244
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDP 299
N+ +LLKN+ F++++EN++M ILN+ D L+ P + WL GVTT DG +
Sbjct: 245 NVGKLLKNMTFTLSMENQIMGAILNDGADPAAAASAWLKAQPATFEGWLAGVTTVDGGEA 304
Query: 300 SRQLERFM 307
+ +
Sbjct: 305 IPAVRTAL 312
>gi|148974205|ref|ZP_01811738.1| putative glycine betaine-binding ABC transporter [Vibrionales
bacterium SWAT-3]
gi|145965902|gb|EDK31150.1| putative glycine betaine-binding ABC transporter [Vibrionales
bacterium SWAT-3]
Length = 323
Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats.
Identities = 124/309 (40%), Positives = 196/309 (63%), Gaps = 3/309 (0%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+ + + F+ + + + C VRFAD GWTDI ATTA+T+ +L+ LGY T L
Sbjct: 12 KALATLAISSFAFTANASVEPQQCENVRFADVGWTDITATTAVTTELLK-GLGYTTKTDL 70
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
L+VPVT+ S+ N ID+F+G W P++E IA Y E G+++ V NL+GAKY LAV +
Sbjct: 71 LSVPVTYSSMANGDIDVFLGNWMPTMEGDIAKYREAGTVETVRANLEGAKYTLAVPKYVY 130
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
G+KS+ D+AK+ + +IYGIEPGN+GN+ I MI+++ F LK F L+E+SE S
Sbjct: 131 DAGVKSFADLAKHADKFKDRIYGIEPGNDGNRLIQSMIDSDAFGLKDFSLVESSEAGMVS 190
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCP 239
Q+ R R + V+L W PHP+NS++ + YL GG++ +G A+VYT VRS+YL +C
Sbjct: 191 QVSRAARRSQWIVYLGWAPHPMNSNVEMEYLSGGDDFFGPNYGGANVYTNVRSNYLSECS 250
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDP 299
N+ +LL+N++F++ +EN++M+ ILN + + L ++P ++ WL V T G+
Sbjct: 251 NVGQLLQNLEFTLEMENQLMEAILNQNVKPEKAAQQWLNSNPQQVEAWLDNVKTHKGESA 310
Query: 300 SRQLERFMN 308
++ + ++
Sbjct: 311 TQAVTEYLK 319
>gi|330898814|gb|EGH30233.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. japonica str.
M301072PT]
Length = 315
Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats.
Identities = 124/314 (39%), Positives = 192/314 (61%), Gaps = 8/314 (2%)
Query: 1 MY--KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K L + L ++ A + ++C V F+D GWTDI TTA+TS +LE LGY+T
Sbjct: 1 MKGSKSLLLAATLCMPVLAQAAEPEACHTVNFSDVGWTDITVTTAVTSAVLES-LGYETK 59
Query: 59 IKLLAVPVTFRSLKNK-GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+++VPVT++SL + +D+F+G W P++E I PY E G+++ V NL+ AKY LAV
Sbjct: 60 TTMISVPVTYKSLADGKNMDVFLGNWMPTMENDIKPYREAGTVETVRANLENAKYTLAVP 119
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN--NNKFSLKGFRLIEAS 175
+ + G+ + DIAK+KKELG KIYGIEPGN+GN+ I MI+ GF+++E+S
Sbjct: 120 EALYDKGLHDFADIAKFKKELGGKIYGIEPGNDGNRLIQSMIDKNAFGLKDAGFKVVESS 179
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSD 233
E A SQ+ R + VFL WEPHP+N+ + YL GG++ +G+A++YT R
Sbjct: 180 EAAMLSQVDRAVKRKNDVVFLGWEPHPMNTRFKMKYLTGGDDFFGPNYGQATIYTNTRKG 239
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
Y +C N+ +LLKN+ F++ +E+ +M +L++K + ++ +P +L WL GVTT
Sbjct: 240 YSQECSNVGQLLKNLSFTLNMESTLMGNVLDDKMKPDAAAKAWIKKNPQVLDAWLAGVTT 299
Query: 294 FDGQDPSRQLERFM 307
DG+ + +
Sbjct: 300 VDGKPGLEAAKAKL 313
>gi|330956992|gb|EGH57252.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. maculicola str. ES4326]
Length = 315
Score = 237 bits (604), Expect = 1e-60, Method: Composition-based stats.
Identities = 126/314 (40%), Positives = 192/314 (61%), Gaps = 8/314 (2%)
Query: 1 MY--KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K L + L ++ A + ++C V F+D GWTDI TTA+TS +LE LGYKT
Sbjct: 1 MKGSKSLLLAATLCMPVLAQAAEPEACHTVNFSDVGWTDITVTTAVTSAVLES-LGYKTK 59
Query: 59 IKLLAVPVTFRSLKNK-GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+++VPVT++SL + +D+F+G W P++E I PY E G+++ V NL+ AKY LAV
Sbjct: 60 TTMISVPVTYKSLADGKNMDVFLGNWMPTMENDIKPYREAGTVETVRANLENAKYTLAVP 119
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN--NNKFSLKGFRLIEAS 175
+ + G+ + DIAK+KKELG KIYGIEPGN+GN+ I MI+ GF+++E+S
Sbjct: 120 EALYNKGLHDFADIAKFKKELGGKIYGIEPGNDGNRLIQSMIDKNAFGLKDAGFKVVESS 179
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSD 233
E A SQ+ R + N VFL WEPHP+N+ + YL GG++ +G A++YT R
Sbjct: 180 EAAMLSQVERAGKRNNDVVFLGWEPHPMNTRFKMKYLTGGDDFFGPNYGPATIYTNTRKG 239
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
Y +C N+ +LLKN+ F++ +E+ +M +L++K + ++ +P +L WL GVTT
Sbjct: 240 YSQECSNVGQLLKNLSFTLDMESTLMGNVLDDKIKPDAAAKAWIKKNPQVLDTWLAGVTT 299
Query: 294 FDGQDPSRQLERFM 307
DG+ + +
Sbjct: 300 VDGKPGLEAAKAKL 313
>gi|126732155|ref|ZP_01747957.1| Substrate-binding region of ABC-type glycine betaine transport
system [Sagittula stellata E-37]
gi|126707444|gb|EBA06508.1| Substrate-binding region of ABC-type glycine betaine transport
system [Sagittula stellata E-37]
Length = 306
Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats.
Identities = 138/309 (44%), Positives = 193/309 (62%), Gaps = 6/309 (1%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K L C S C V +D GWTDI ATTA TSV+LE LGY T++K
Sbjct: 1 MKKTLTFCAIAAL---SANGAWADCDTVVLSDVGWTDITATTAATSVVLEA-LGYDTDVK 56
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+L+VPVT+ S+ + +D+F+G W P++E IAPY E G++ V NL+GAKY LAVN
Sbjct: 57 VLSVPVTYTSMASGDVDVFLGNWMPTMEADIAPYREAGTVDTVRANLEGAKYTLAVNKAA 116
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
LGIK + DIA +K L KIYGIEPGN+GN+ I MI+ + F L+GF ++E+SE
Sbjct: 117 ADLGIKDFSDIAAHKDALEGKIYGIEPGNDGNRLIQSMIDEDAFGLEGFEVVESSEQGML 176
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF--GEASVYTVVRSDYLDKC 238
SQ+ R R + P VFL WEPHP+N++ + YL GG++ G G A+VYT + + ++C
Sbjct: 177 SQVARADRRDEPVVFLGWEPHPMNANYEMSYLTGGDDYFGPNLGGATVYTNTSAGFAEEC 236
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN+ LL N++FS+A+ENE+M IL++ D + L+ + D+L WL GVTT DG D
Sbjct: 237 PNLGALLNNLEFSLAMENEIMGKILDDGADPEDAATEWLQANADVLDGWLSGVTTKDGGD 296
Query: 299 PSRQLERFM 307
++ +
Sbjct: 297 AMEAVKGAL 305
>gi|254254556|ref|ZP_04947873.1| Glycine betaine-binding protein [Burkholderia dolosa AUO158]
gi|124899201|gb|EAY71044.1| Glycine betaine-binding protein [Burkholderia dolosa AUO158]
Length = 315
Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats.
Identities = 129/314 (41%), Positives = 191/314 (60%), Gaps = 9/314 (2%)
Query: 1 MYKILAVCLFLTTFSISY----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
M ++L + + A D +C VRFAD GW+DIAATT + S +L + LGY
Sbjct: 1 MKRLLIAAVCGIGVAAPMSAVHAADPPACKNVRFADVGWSDIAATTGLASTML-QGLGYN 59
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLA 115
+ +VP+TF +K+K ID+F+GYW P+++ I P+ + G+IK++A NL GAKY LA
Sbjct: 60 PTKTIASVPITFAGIKSKQIDVFLGYWSPTMDPIIQPFTKAGTIKVLATPNLTGAKYTLA 119
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
V D + G+KS+ DI KY +L KIYGIEPGN+GN I MI+ N+F L F+L+E+S
Sbjct: 120 VPDYVYQGGLKSFADIQKYADKLNGKIYGIEPGNDGNALIKKMIDGNQFGLGKFKLVESS 179
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSD 233
E ++ R R+ VFL WEPHP+N + I YL GG+++ +GEA V T D
Sbjct: 180 EAGMLVEVNRAIRDKQWIVFLGWEPHPMNVQMKIDYLSGGDDVFGPNYGEAKVLTATPPD 239
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
Y +CPN+++ + N++F+ A+EN +M I+ NK+D L+ +P L WL GVTT
Sbjct: 240 YEQRCPNVAKFVSNLQFTTAIENHVMVPIM-NKEDPNKAAAKWLKANPQALDKWLAGVTT 298
Query: 294 FDGQDPSRQLERFM 307
DG+ ++ ++
Sbjct: 299 IDGKPGLPAVKAYL 312
>gi|152988027|ref|YP_001351485.1| hypothetical protein PSPA7_6174 [Pseudomonas aeruginosa PA7]
gi|150963185|gb|ABR85210.1| hypothetical protein PSPA7_6174 [Pseudomonas aeruginosa PA7]
Length = 312
Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats.
Identities = 104/314 (33%), Positives = 177/314 (56%), Gaps = 8/314 (2%)
Query: 1 MY---KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M + L L + + A + + C VR WTD+ A++A+ +L + LGY+
Sbjct: 1 MKTTIRQLGCALLILASGAALAAEPEQCRTVRLGTVNWTDVVASSAVAEALL-DGLGYQV 59
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAEN-LQGAKYMLAV 116
+ + L +K +D+F+GYW P+++ PYL++G I+++ L A+ AV
Sbjct: 60 KQTSASQQIVLAGLADKQLDLFLGYWQPTMQPVARPYLDKGRIEVIEPPTLADAQSTYAV 119
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
G+K++ DIA++K +LG +IY IEPG+ N+ MI++N+F LKGF+L+E+SE
Sbjct: 120 PRYVAEGGLKTFADIARFKDKLGGRIYAIEPGSGSNRITRKMIDDNRFGLKGFQLVESSE 179
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDY 234
+ ++R + VF W+PHP+N +++ YL G E++ G A+V T+ + Y
Sbjct: 180 AGMLTAVKRAIKRKQWVVFFGWKPHPMNLQIDMTYLTGSEDVFGPDEGAATVSTMTAAGY 239
Query: 235 LDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTF 294
+C N++RLL+N++FS A +++M IL + R L+ +P+ LK WL GV+TF
Sbjct: 240 QAQCGNVARLLRNLRFSSAQVSQVMAPIL-ERTQPLDAARQWLKANPEPLKAWLEGVSTF 298
Query: 295 DGQDPSRQLERFMN 308
DG+D L+ +
Sbjct: 299 DGKDGLAALQASLK 312
>gi|330819750|ref|YP_004348612.1| Glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia gladioli
BSR3]
gi|327371745|gb|AEA63100.1| Glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia gladioli
BSR3]
Length = 316
Score = 237 bits (603), Expect = 2e-60, Method: Composition-based stats.
Identities = 129/315 (40%), Positives = 189/315 (60%), Gaps = 10/315 (3%)
Query: 1 MYKILAVCLFLTTFS-----ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M + L + + A D +C VRFAD GW+DIAATT + S +L LGY
Sbjct: 1 MKRFLITAACGLGMAVAPWTAAQAADPQACKSVRFADVGWSDIAATTGLASAML-AGLGY 59
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYML 114
+ +VP+TF +K+K ID+F+GYW P+++ IAP+ + G+IK++A NL GAKY L
Sbjct: 60 TPTKTIASVPITFAGIKSKQIDVFLGYWSPTMDPIIAPFTKAGTIKVLATPNLTGAKYTL 119
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
AV D + G+KS+ DI K+ +L KIYGIEPGN+GN I MI+ N++ L F+L+E+
Sbjct: 120 AVPDYVYQGGLKSFADIQKFADKLNGKIYGIEPGNDGNALIKKMIDGNQYGLGKFKLVES 179
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRS 232
SE ++ R R+ VFL WEPHP+N + YL GG+++ +GEA V T
Sbjct: 180 SEAGMLVEVNRAIRDKQWIVFLGWEPHPMNVQFKMDYLSGGDDVFGPNYGEARVLTATPP 239
Query: 233 DYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVT 292
DY +CPN+++ + N++FS +EN +M I+ NKQD L+ +P L WL GVT
Sbjct: 240 DYAARCPNVAKFVSNLQFSTEIENHVMVPIM-NKQDPNKAAAAWLKQNPQQLDKWLAGVT 298
Query: 293 TFDGQDPSRQLERFM 307
TFDG+ ++ ++
Sbjct: 299 TFDGKPGLPAVKTYL 313
>gi|78061308|ref|YP_371216.1| ABC proline/glycine betaine transporter, periplasmic ligand binding
protein [Burkholderia sp. 383]
gi|77969193|gb|ABB10572.1| ABC proline/glycine betaine transporter, periplasmic ligand binding
protein [Burkholderia sp. 383]
Length = 315
Score = 237 bits (603), Expect = 2e-60, Method: Composition-based stats.
Identities = 126/314 (40%), Positives = 188/314 (59%), Gaps = 9/314 (2%)
Query: 1 MYKILAVCLFLTTFSISY----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
M ++L + + A D C VRFAD GW+DIAATT + S +L + LGY
Sbjct: 1 MKRLLIAAVCGIGITAPMSAVYAADPPVCKNVRFADVGWSDIAATTGLASTML-QGLGYS 59
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLV-AENLQGAKYMLA 115
+ +VP+TF +K+K ID+F+GYW P+++ I P+ + G IK++ NL GAKY LA
Sbjct: 60 PTKTIASVPITFAGIKSKQIDVFLGYWSPTMDPIIQPFTKAGQIKVLSTPNLTGAKYTLA 119
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
V D + G+KS+ DI KY +L KIYGIEPGN+GN I MI+ N+F L F+++E+S
Sbjct: 120 VPDYVYQGGLKSFADIQKYADKLNGKIYGIEPGNDGNLLIKKMIDGNQFGLGKFKMVESS 179
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSD 233
E ++ R R+ VFL WEPHP+N + I YL GG+++ +GEA V T D
Sbjct: 180 EAGMLVEVNRAIRDKQWIVFLGWEPHPMNVQMKIDYLTGGDDVFGPNYGEAKVLTATPPD 239
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
Y +CPN+++ + N++F+ ++EN +M I+ NK+D L+ +P L WL GVTT
Sbjct: 240 YAQRCPNVAKFVSNLQFTTSIENHVMMPIM-NKEDPNKAAAEWLKANPQALDKWLAGVTT 298
Query: 294 FDGQDPSRQLERFM 307
DG+ ++ ++
Sbjct: 299 LDGKPGLPAVKAYL 312
>gi|330938580|gb|EGH42154.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. pisi str. 1704B]
Length = 315
Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats.
Identities = 124/314 (39%), Positives = 192/314 (61%), Gaps = 8/314 (2%)
Query: 1 MY--KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K L + L ++ A + ++C V F+D GWTDI TTA+TS +LE LGYKT
Sbjct: 1 MKGSKSLLLAATLCMPVLAQAAEPEACHTVNFSDVGWTDITVTTAVTSAVLES-LGYKTK 59
Query: 59 IKLLAVPVTFRSLKNK-GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+++VPVT++SL + +D+F+G W P++E I PY E G+++ V NL+ AKY LAV
Sbjct: 60 TTMISVPVTYKSLADGKNMDVFLGNWMPTMENDIKPYREAGTVETVRANLENAKYTLAVP 119
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN--NNKFSLKGFRLIEAS 175
+ + G+ + DIAK+KKELG KIYGIEPGN+GN+ I MI+ GF+++E+S
Sbjct: 120 EALYDKGLHDFADIAKFKKELGGKIYGIEPGNDGNRLIQSMIDKNAFGLKDAGFKVVESS 179
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSD 233
E A SQ+ R + VFL WEPHP+N+ + YL GG++ +G+A++YT R
Sbjct: 180 EAAMLSQVDRAVKRKNDVVFLGWEPHPMNTRFKMKYLTGGDDFFGPNYGQATIYTNTRKG 239
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
Y +C N+ +LLKN+ F++ +E+ +M +L++K + ++ +P +L WL GV+T
Sbjct: 240 YSQECSNVGQLLKNLSFTLNMESTLMGNVLDDKMKPDAAAKAWIKKNPQVLDTWLAGVST 299
Query: 294 FDGQDPSRQLERFM 307
DG+ + +
Sbjct: 300 VDGKPGLEAAKAKL 313
>gi|206564246|ref|YP_002235009.1| putative glycine betaine/L-proline ABC transporter
substrate-binding protein [Burkholderia cenocepacia
J2315]
gi|198040286|emb|CAR56271.1| putative glycine betaine/L-proline-binding protein ABC transporter
component [Burkholderia cenocepacia J2315]
Length = 315
Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats.
Identities = 129/314 (41%), Positives = 190/314 (60%), Gaps = 9/314 (2%)
Query: 1 MYKILAVCLFLTTFSISY----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
M ++L + + A D C VRFAD GW+DIAATT + S +L + LGY
Sbjct: 1 MKRLLIAAVCGIGVAAPMSAVYAADPPVCKNVRFADVGWSDIAATTGLASTML-QGLGYN 59
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLA 115
+ +VP+TF +K+K ID+F+GYW P+++ I P+ + G+IK++A NL GAKY LA
Sbjct: 60 PTKTIASVPITFAGIKSKQIDVFLGYWSPTMDPIIQPFTKAGTIKVLATPNLTGAKYTLA 119
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
V D + G+KS+ DI KY +L KIYGIEPGN+GN I MI+ N+F L F+L+E+S
Sbjct: 120 VPDYVYQGGLKSFADIQKYADKLNGKIYGIEPGNDGNALIKKMIDGNQFGLGKFKLVESS 179
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSD 233
E ++ R R+ VFL WEPHP+N + I YL GG+++ +GEA V T D
Sbjct: 180 EAGMLVEVNRAIRDKQWIVFLGWEPHPMNVQMKIDYLTGGDDVFGPNYGEAKVLTATPPD 239
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
Y +CPN+++ + N++F+ ++EN +M I+ NKQD L+ +P L WL GVTT
Sbjct: 240 YSQRCPNVAKFVSNLQFTTSIENHVMVPIM-NKQDPNKAAAEWLKANPQALDKWLAGVTT 298
Query: 294 FDGQDPSRQLERFM 307
DG+ ++ ++
Sbjct: 299 LDGKPGLPAVKAYL 312
>gi|224824408|ref|ZP_03697516.1| choline ABC transporter, periplasmic binding protein [Lutiella
nitroferrum 2002]
gi|224603827|gb|EEG10002.1| choline ABC transporter, periplasmic binding protein [Lutiella
nitroferrum 2002]
Length = 312
Score = 236 bits (601), Expect = 3e-60, Method: Composition-based stats.
Identities = 143/310 (46%), Positives = 203/310 (65%), Gaps = 5/310 (1%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+YKI + S++ A D C VRFAD GWTDIAATT M SV+LE LGYK
Sbjct: 3 LYKIAGALVMGAFTSMAMANDPAQCQKVRFADVGWTDIAATTGMASVVLE-GLGYKPVTT 61
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAVNDV 119
+ +VP+TF +KNK ID F+GYW PS+ I P+++ G IK++ NL GAKY LAV D
Sbjct: 62 IASVPITFAGIKNKQIDAFLGYWNPSMTPMIEPFVKAGQIKVLDKPNLVGAKYTLAVPDY 121
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
A G+K++ DIAK+K +L +IYGIEPGN+GN+ I DMI N+F L GF+L+E+SE
Sbjct: 122 VAAGGLKTFADIAKFKDKLDGRIYGIEPGNDGNKLIDDMIKKNQFGLSGFKLVESSEAGM 181
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDK 237
+++ R R VFL WEPHP+N ++YL GG+++ FGEA V+T + +DY +
Sbjct: 182 MAEVERAIRQKKWVVFLGWEPHPMNVKFKMNYLAGGDDVFGPNFGEAKVFTGMATDYQTR 241
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQ 297
CPN++RLL N++FS +EN +M I+ +K + R L+ +P++LK WL GV TFDG+
Sbjct: 242 CPNVARLLTNLQFSTDMENHVMGPIM-DKVKPEQAARDYLKKNPNVLKGWLAGVKTFDGK 300
Query: 298 DPSRQLERFM 307
D ++ +++
Sbjct: 301 DGLTKVNQYL 310
>gi|254475035|ref|ZP_05088421.1| substrate-binding region of ABC-type glycine betaine transport
system [Ruegeria sp. R11]
gi|214029278|gb|EEB70113.1| substrate-binding region of ABC-type glycine betaine transport
system [Ruegeria sp. R11]
Length = 308
Score = 236 bits (601), Expect = 4e-60, Method: Composition-based stats.
Identities = 140/309 (45%), Positives = 194/309 (62%), Gaps = 5/309 (1%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M L L S + A C+ V F+D GWTDI ATTA T+ +LE LGY+T+IK
Sbjct: 1 MK--LLSSLSTLAIVASASMAAADCSEVVFSDVGWTDITATTAATTTVLEA-LGYETDIK 57
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+L+VPVT+ S+ N ID+F+G W P++E IAPY E G+++ V NL+GAKY LAVN
Sbjct: 58 ILSVPVTYTSMANGDIDVFLGNWMPTMEGDIAPYREAGTVETVRANLEGAKYTLAVNSAA 117
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
LGIK + DIA + L KIYGIEPGN+GN+ I MI+ F L GF ++E+SE
Sbjct: 118 TELGIKDFADIAAHADALEGKIYGIEPGNDGNRLIQSMIDGGSFGLNGFEVVESSEQGML 177
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKC 238
+Q+ R R P VFL WEPHP+N++ + YL GG+E FG A+V+T R Y+++C
Sbjct: 178 AQVERASRKGEPVVFLGWEPHPMNANFEMGYLTGGDEFFGPNFGGATVFTNTRKGYVEEC 237
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN+ +LL N++FS+A+ENE+M ILN+ +D L+ +PD WL VTT DG D
Sbjct: 238 PNVGKLLTNLEFSLAMENEIMGAILNDGEDPADAASAWLKANPDAFMGWLDAVTTKDGGD 297
Query: 299 PSRQLERFM 307
+ ++ +
Sbjct: 298 ATAAVKASL 306
>gi|66047933|ref|YP_237774.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. syringae B728a]
gi|63258640|gb|AAY39736.1| Substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. syringae B728a]
Length = 315
Score = 236 bits (601), Expect = 4e-60, Method: Composition-based stats.
Identities = 124/314 (39%), Positives = 191/314 (60%), Gaps = 8/314 (2%)
Query: 1 MY--KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K L + L ++ A + ++C V F+D GWTDI TTA+TS +LE LGYKT
Sbjct: 1 MKGSKSLLLAATLCMPVLAQAAEPEACHTVNFSDVGWTDITVTTAVTSAVLES-LGYKTK 59
Query: 59 IKLLAVPVTFRSLKNK-GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+++VPVT++SL + +D+F+G W P++E I PY E G+++ V NL+ AKY LAV
Sbjct: 60 TTMISVPVTYKSLADGKNMDVFLGNWMPTMENDIKPYREAGTVETVRANLENAKYTLAVP 119
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN--NNKFSLKGFRLIEAS 175
+ + G+ + DIAK+KKELG KIYGIEPGN+GN+ I MI+ GF+++E+S
Sbjct: 120 EALYDKGLHDFADIAKFKKELGGKIYGIEPGNDGNRLIQSMIDKNAFGLKDAGFKVVESS 179
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSD 233
E A SQ+ R + VFL WEPHP+N+ + YL GG++ +G+A++YT R
Sbjct: 180 EAAMLSQVDRAVKRKNDVVFLGWEPHPMNTRFKMKYLTGGDDFFGPNYGQATIYTNTRKG 239
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
Y +C N+ +LLKN+ F++ +E+ +M +L++K + ++ +P +L WL GV T
Sbjct: 240 YSQECSNVGQLLKNLSFTLNMESTLMGNVLDDKMKPDAAAKAWIKKNPQVLDTWLAGVNT 299
Query: 294 FDGQDPSRQLERFM 307
DG+ + +
Sbjct: 300 VDGKPGLEAAKAKL 313
>gi|288961771|ref|YP_003452081.1| glycine betaine/proline transport system substrate-binding protein
[Azospirillum sp. B510]
gi|288914051|dbj|BAI75537.1| glycine betaine/proline transport system substrate-binding protein
[Azospirillum sp. B510]
Length = 327
Score = 235 bits (600), Expect = 5e-60, Method: Composition-based stats.
Identities = 128/289 (44%), Positives = 185/289 (64%), Gaps = 3/289 (1%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFM 80
+ SC VRF D GWTDIAATTA+ SV L + LGYK + +VP+ + LK K +D+F+
Sbjct: 34 EPASCKTVRFGDVGWTDIAATTALASVTL-DALGYKPTTTMSSVPLVYTGLKTKSLDVFL 92
Query: 81 GYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGA 140
G W P++E F+ P LE+GS+++ NL+GAKY LAV G+KS+ DIAK+K +LG
Sbjct: 93 GNWMPTMEPFVKPVLEDGSVEVTRVNLEGAKYTLAVPKYAADAGLKSFADIAKFKDKLGG 152
Query: 141 KIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEP 200
+IYGIE GN+GN I M+ + F LK F+L+E+SE ++++R RN VFL WEP
Sbjct: 153 RIYGIEAGNDGNLIIDKMLKADAFGLKDFKLVESSEAGMLAEVKRATRNKGWVVFLGWEP 212
Query: 201 HPINSDLNIHYLPGGEEISGF--GEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEM 258
HP+N + YL GG++ G G A+V T VR Y +CPN+ +LL N+ F++ +EN +
Sbjct: 213 HPMNKSFELTYLEGGDDWFGPNLGGATVATNVRKGYAAECPNVGKLLSNLSFTLGMENAV 272
Query: 259 MKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
M I+N + + L+ +P++LKNWL GVTT DG+D ++ +
Sbjct: 273 MDDIMNGNKKPDAAAKAWLKKNPEVLKNWLSGVTTIDGKDGLAAVQAKL 321
>gi|15600581|ref|NP_254075.1| hypothetical protein PA5388 [Pseudomonas aeruginosa PAO1]
gi|107104490|ref|ZP_01368408.1| hypothetical protein PaerPA_01005567 [Pseudomonas aeruginosa PACS2]
gi|116053535|ref|YP_793862.1| hypothetical protein PA14_71160 [Pseudomonas aeruginosa UCBPP-PA14]
gi|218894492|ref|YP_002443362.1| putative glycine betaine/L-proline ABC transporter, periplasmic
substrate-binding protein [Pseudomonas aeruginosa
LESB58]
gi|254237927|ref|ZP_04931250.1| hypothetical protein PACG_04030 [Pseudomonas aeruginosa C3719]
gi|254242939|ref|ZP_04936261.1| hypothetical protein PA2G_03726 [Pseudomonas aeruginosa 2192]
gi|296392248|ref|ZP_06881723.1| choline ABC transporter, periplasmic binding protein [Pseudomonas
aeruginosa PAb1]
gi|313111681|ref|ZP_07797475.1| hypothetical protein PA39016_003420010 [Pseudomonas aeruginosa
39016]
gi|9951712|gb|AAG08773.1|AE004951_7 hypothetical protein PA5388 [Pseudomonas aeruginosa PAO1]
gi|115588756|gb|ABJ14771.1| putative glycine betaine/L-proline ABC transporter, periplasmic
substrate-binding protein [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126169858|gb|EAZ55369.1| hypothetical protein PACG_04030 [Pseudomonas aeruginosa C3719]
gi|126196317|gb|EAZ60380.1| hypothetical protein PA2G_03726 [Pseudomonas aeruginosa 2192]
gi|218774721|emb|CAW30538.1| putative glycine betaine/L-proline ABC transporter, periplasmic
substrate-binding protein [Pseudomonas aeruginosa
LESB58]
gi|310883977|gb|EFQ42571.1| hypothetical protein PA39016_003420010 [Pseudomonas aeruginosa
39016]
Length = 312
Score = 235 bits (599), Expect = 6e-60, Method: Composition-based stats.
Identities = 104/314 (33%), Positives = 177/314 (56%), Gaps = 8/314 (2%)
Query: 1 MY---KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M + L L + + A + + C VR WTD+ A++A+ +L + LGY+
Sbjct: 1 MKTTIRQLGCALLILASGAALAAEPEQCRTVRLGTVNWTDVVASSAVAEALL-DGLGYQV 59
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAEN-LQGAKYMLAV 116
+ + L +K +D+F+GYW P+++ PYL++G I+++ L A+ AV
Sbjct: 60 KQTSASQQIVLAGLADKQLDLFLGYWQPTMQPVARPYLDKGRIEVIEPPTLADAQSTYAV 119
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
G+K++ DIA++K +LG +IY IEPG+ N+ MI++N+F LKGF+L+E+SE
Sbjct: 120 PSYVAEGGLKTFADIARFKDKLGGRIYAIEPGSGSNRITRKMIDDNRFGLKGFQLVESSE 179
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDY 234
+ ++R + VF W+PHP+N +++ YL G E++ G A+V T+ + Y
Sbjct: 180 AGMLTAVKRAIKRKQWVVFFGWKPHPMNLQIDMTYLTGSEDVFGPDEGAATVSTMTAAGY 239
Query: 235 LDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTF 294
+C N++RLL N++FS A +++M IL ++ R L+ +P+ LK WL GV+TF
Sbjct: 240 QAQCGNVARLLHNLRFSSAQVSQVMAPIL-DRTQPLDAARQWLKANPEPLKAWLDGVSTF 298
Query: 295 DGQDPSRQLERFMN 308
DG+D L+ +
Sbjct: 299 DGKDGLAALQASLK 312
>gi|114326748|ref|YP_743905.1| glycine betaine/L-proline transport system binding protein proX
[Granulibacter bethesdensis CGDNIH1]
gi|114314922|gb|ABI60982.1| glycine betaine/L-proline transport system binding protein proX
[Granulibacter bethesdensis CGDNIH1]
Length = 338
Score = 235 bits (599), Expect = 7e-60, Method: Composition-based stats.
Identities = 131/308 (42%), Positives = 193/308 (62%), Gaps = 5/308 (1%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
++A F S + D SC VR +D GWTD++ATTA+T+ +L++ LGY+ ++ LL+
Sbjct: 34 LMAGVSFGLFASTAAQADPSSCRKVRLSDIGWTDVSATTAVTAALLKD-LGYRPDVALLS 92
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+PVT+RSL +K +D+F G W PS PY E S+ ++ NL GAKY LAV +
Sbjct: 93 LPVTYRSLADKQLDVFTGNWMPSGAADRKPY--EASLDIIGPNLTGAKYTLAVPAYLYDA 150
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
G+ + DI+K+ +LG KIYGIEPGN+GN+ IL+MI +N +L F+LIE+SE ++I
Sbjct: 151 GLHDFADISKFADKLGNKIYGIEPGNDGNRHILEMIGSNANNLGKFKLIESSEQGMLAEI 210
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNI 241
R RN P VFL WEPHP+N+ I YL GG++ +G A ++T Y +KCPN+
Sbjct: 211 DRKIRNKEPIVFLGWEPHPMNTLYKIQYLTGGDKEFGPNYGGAEIFTNTWKGYSEKCPNV 270
Query: 242 SRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSR 301
+LL N+ FS+ EN+MM I+N+ D + LR++PD +K WL GVTT+DG
Sbjct: 271 GKLLHNMHFSLDGENKMMDAIMNHHVDPPKAAKAWLRSNPDTVKTWLDGVTTYDGSPGWE 330
Query: 302 QLERFMNN 309
++ + +
Sbjct: 331 AVKAKLGD 338
>gi|203282240|pdb|2REG|A Chain A, Abc-Transporter Choline Binding Protein In Complex With
Choline
gi|203282241|pdb|2REG|B Chain B, Abc-Transporter Choline Binding Protein In Complex With
Choline
gi|203282242|pdb|2REJ|A Chain A, Abc-Transporter Choline Binding Protein In Unliganded
Semi- Closed Conformation
gi|203282243|pdb|2REJ|B Chain B, Abc-Transporter Choline Binding Protein In Unliganded
Semi- Closed Conformation
gi|203282244|pdb|2RF1|A Chain A, Crystal Structure Of Chox In An Unliganded Closed
Conformation
gi|203282245|pdb|2RF1|B Chain B, Crystal Structure Of Chox In An Unliganded Closed
Conformation
gi|208435538|pdb|2RIN|A Chain A, Abc-Transporter Choline Binding Protein In Complex With
Acetylcholine
gi|208435539|pdb|2RIN|B Chain B, Abc-Transporter Choline Binding Protein In Complex With
Acetylcholine
gi|261278724|pdb|3HCQ|A Chain A, Structural Analysis Of The Choline Binding Protein Chox In
A Semi-Closed And Ligand-Free Conformation
gi|261278725|pdb|3HCQ|B Chain B, Structural Analysis Of The Choline Binding Protein Chox In
A Semi-Closed And Ligand-Free Conformation
Length = 298
Score = 235 bits (599), Expect = 7e-60, Method: Composition-based stats.
Identities = 139/290 (47%), Positives = 200/290 (68%), Gaps = 3/290 (1%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
+ +SC VRF+D GWTDI ATTA + ILE LGY+T++K+L+VPVT+ SLKNK ID+F
Sbjct: 1 AEPESCGTVRFSDVGWTDITATTATATTILEA-LGYETDVKVLSVPVTYTSLKNKDIDVF 59
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
+G W P++E IAPY E+ S++ V ENL GAKY LA N G LGIK ++DIA +K EL
Sbjct: 60 LGNWMPTMEADIAPYREDKSVETVRENLAGAKYTLATNAKGAELGIKDFKDIAAHKDELD 119
Query: 140 AKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWE 199
KIYGIEPGN+GN+ I+DM+ F LKGF ++E+SE +Q+ R +++ P VFL WE
Sbjct: 120 GKIYGIEPGNDGNRLIIDMVEKGTFDLKGFEVVESSEQGMLAQVARAEKSGDPIVFLGWE 179
Query: 200 PHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENE 257
PHP+N++ + YL GG+++ +G A+V+T VR+ Y +CPN+ +LL+N+ FS+ +ENE
Sbjct: 180 PHPMNANFKLTYLSGGDDVFGPNYGGATVHTNVRAGYTTECPNVDKLLQNLSFSLQMENE 239
Query: 258 MMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+M ILN+ +D + L+ +P ++ WL GV T DG D ++ +
Sbjct: 240 IMGKILNDGEDPEKAAAAWLKDNPQSIEPWLSGVATKDGGDGLAAVKAAL 289
>gi|330807070|ref|YP_004351532.1| choline ABC transporter periplasmic protein [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|327375178|gb|AEA66528.1| Putative choline ABC transporter, periplasmic component
[Pseudomonas brassicacearum subsp. brassicacearum
NFM421]
Length = 315
Score = 235 bits (598), Expect = 8e-60, Method: Composition-based stats.
Identities = 119/317 (37%), Positives = 182/317 (57%), Gaps = 10/317 (3%)
Query: 1 MYKIL-----AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M ++ +C + A + SC VR WTD+ AT+ M V+L LGY
Sbjct: 1 MKRLFKRCLSILCGTTLLSVGAMAAEPASCQTVRMGVVNWTDVIATSGMADVLL-TGLGY 59
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYML 114
+ + F +++K +DIF+GYW P+++K IAP+L +K++ +L A+ L
Sbjct: 60 DSKQTSAVQQIIFAGIRDKRLDIFLGYWKPAMDKNIAPFLAANQVKVLDKPSLADAQATL 119
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
AV D A G+K++ DIA++K +LG KIYGIEPG+ N I +I N F LK F+LIE+
Sbjct: 120 AVPDYVAAAGLKTFADIARFKDQLGGKIYGIEPGSGANTTIKTLIETNHFGLKDFKLIES 179
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRS 232
E + ++R VF+ W PHP+N ++NI YL G E++ G A+V TV
Sbjct: 180 GEAGMLAAVQRAVNRKEFVVFVGWTPHPMNINMNITYLTGSEDVYGPNEGAATVSTVTAP 239
Query: 233 DYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVT 292
DY +CPN++RLL+N+ F+ A E+++M I+ ++ Q V R LR HP+ L+ WL GVT
Sbjct: 240 DYAQRCPNVNRLLENLTFTAAQESQLMVPIM-ERKTPQDVARQWLRDHPEDLQKWLAGVT 298
Query: 293 TFDGQDPSRQLERFMNN 309
+FDG+D ++ + N
Sbjct: 299 SFDGKDGVAAVQASLKN 315
>gi|163758585|ref|ZP_02165672.1| ABC transporter binding protein [Hoeflea phototrophica DFL-43]
gi|162283875|gb|EDQ34159.1| ABC transporter binding protein [Hoeflea phototrophica DFL-43]
Length = 309
Score = 235 bits (598), Expect = 9e-60, Method: Composition-based stats.
Identities = 129/304 (42%), Positives = 192/304 (63%), Gaps = 3/304 (0%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
I + L + A D+++C VRFAD GWTDI ATTA+ V+L + LGY +++L+
Sbjct: 7 ITIAAMLLAGTATVQAADSEACKNVRFADVGWTDIQATTAVAGVVL-DALGYSQEVQVLS 65
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
VPVT++SLKNK +D+F+G W PS+ + P+L++GS++ +A+NL+GA Y L V
Sbjct: 66 VPVTYQSLKNKDMDVFLGNWMPSMAADVQPFLDDGSVESIAQNLEGAGYGLVVPAYAAEG 125
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
G+ S DI K+K + KIYGIEPGN+GN+ +L+MI++ L GF L+E+SE SQ
Sbjct: 126 GVTSLTDIGKFKDQFDGKIYGIEPGNDGNRIVLEMIDDAANGLDGFELVESSEAGMLSQA 185
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
+ +N FL W PHPI +++I YL G SGFG A+V+T VR+ + +CPN+
Sbjct: 186 EKALKNEEWIAFLGWTPHPIMGEMDIVYL-DGMGDSGFGAATVHTNVRAGFTSECPNVGT 244
Query: 244 LLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQL 303
L+KN++FS+ +EN++M IL +D L+ +PD + WL GVTTFDG D + +
Sbjct: 245 LVKNLEFSLTMENQIMDAIL-KGEDANEAALAWLKANPDTVSPWLEGVTTFDGGDAAAAV 303
Query: 304 ERFM 307
+
Sbjct: 304 TAKL 307
>gi|70730091|ref|YP_259830.1| glycine betaine/L-proline ABC transporter periplasmic
substrate-binding protein [Pseudomonas fluorescens Pf-5]
gi|68344390|gb|AAY91996.1| glycine betaine/L-proline ABC transporter, periplasmic
substrate-binding protein [Pseudomonas fluorescens Pf-5]
Length = 345
Score = 235 bits (598), Expect = 9e-60, Method: Composition-based stats.
Identities = 121/307 (39%), Positives = 185/307 (60%), Gaps = 5/307 (1%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
LA C + ++A + +C VR WTD+ AT+AM V+L LGY +
Sbjct: 41 FLACCASFLLSAPTWAAEPAACKTVRMGVVNWTDVIATSAMADVLL-GGLGYDSKQTSAV 99
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAVNDVGFA 122
+ F ++++ +DIF+GYW P++++ IAP+L G ++++A +L A+ LAV D
Sbjct: 100 QQIIFAGIRDRRLDIFLGYWKPAMDQNIAPFLAAGQVRVMAQPSLADAQATLAVPDYVAQ 159
Query: 123 LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
G+K++ DIA++K++LG KIYGIEPG+ N I MI+ + F LKGF+LIE+ E +
Sbjct: 160 AGLKTFADIARFKEQLGGKIYGIEPGSGANTTIKTMIDTDHFGLKGFKLIESGEAGMLAA 219
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPN 240
++R VF+ W PHP+N +L I YL G E++ G A+V TV DY ++CPN
Sbjct: 220 VQRAINRKEFVVFVGWTPHPMNINLAITYLTGSEDVYGPNEGAATVSTVTAPDYAERCPN 279
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPS 300
+ RLLKN+ F+ A E+++M I+ +Q Q V R LR HP+ L+ WL GVTTFDG+D
Sbjct: 280 VDRLLKNLSFTAAQESQLMVPIM-QRQSPQEVARQWLREHPEDLQRWLAGVTTFDGRDGV 338
Query: 301 RQLERFM 307
++ +
Sbjct: 339 AAVKASL 345
>gi|163746755|ref|ZP_02154112.1| Substrate-binding region of ABC-type glycine betaine transport
system [Oceanibulbus indolifex HEL-45]
gi|161379869|gb|EDQ04281.1| Substrate-binding region of ABC-type glycine betaine transport
system [Oceanibulbus indolifex HEL-45]
Length = 306
Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats.
Identities = 137/310 (44%), Positives = 196/310 (63%), Gaps = 6/310 (1%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K+L + T + S A A C V F+D GWTDI ATTA SV+L + LGY T K
Sbjct: 1 MKKLLTTSVLAMTAATSLA--AAECNEVTFSDVGWTDITATTAAASVVL-DALGYDTETK 57
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+LAVPVT+ S+ ID+F+G W P++E IA Y EEGS+ V NL+GAKY LAVN V
Sbjct: 58 ILAVPVTYTSMAAGDIDVFLGNWMPTMEGDIAKYREEGSVDTVRANLEGAKYTLAVNKVA 117
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+GIK++ DIA K L +IYGIEPGN+GN+ I MI++N F L F ++E+SE
Sbjct: 118 ADMGIKTFADIAANKDALEGEIYGIEPGNDGNRLIQSMIDDNAFDLGDFEVVESSEQGML 177
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF--GEASVYTVVRSDYLDKC 238
+Q++R R P VFL WEPHP+N++ + YL GG++ G G A+VYT R+ ++++C
Sbjct: 178 AQVQRATRKEEPVVFLGWEPHPMNANFELTYLEGGDDFFGPDLGGATVYTNTRAGFVEEC 237
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN+ + L N++F++A+ENE+M IL++ + + ++ + D+L WL GVTT DG D
Sbjct: 238 PNLGKFLNNLEFTLAMENEIMGKILDDGEKPEEAAAAWIKANSDVLSTWLDGVTTVDGGD 297
Query: 299 PSRQLERFMN 308
+ +
Sbjct: 298 AMEAV-ASLK 306
>gi|146305522|ref|YP_001185987.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas mendocina ymp]
gi|145573723|gb|ABP83255.1| Substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas mendocina ymp]
Length = 314
Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats.
Identities = 133/314 (42%), Positives = 198/314 (63%), Gaps = 9/314 (2%)
Query: 1 MY--KILAVCLFLTTFSI--SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
M K A L + + A + SC VRFA+ GW DIAATT + ++E LGY+
Sbjct: 1 MKTIKTTAAFGLLACLLMQGAMAAEPASCKQVRFAEIGWADIAATTGVAMTLVE-GLGYQ 59
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLV-AENLQGAKYMLA 115
+ +VP+ F +KN +D F+GYW PS++ I P+L++G +K++ NL+GAKY LA
Sbjct: 60 PRKIMASVPIAFTGVKNGQVDAFLGYWAPSMDAVIEPFLKDGGVKVLEKPNLEGAKYTLA 119
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
V G+KS+QDIAK+K +LG KIYGIEPGN+GN I MI +++F L FR+IE+S
Sbjct: 120 VPTYAAEAGLKSFQDIAKFKDQLGGKIYGIEPGNDGNLLIEGMIKSDQFGLGSFRMIESS 179
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSD 233
E Q+ R + P VFL W PHP+N+ +I YL GG+++ +G A VYTVV D
Sbjct: 180 EAGMLVQVSRAIKKKEPVVFLGWAPHPMNTQHDITYLSGGDDVFGPDYGAAKVYTVVPPD 239
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
Y +C N+ +LL N++F+V +E+++M+ +L K++ Q V + ++ +P +L WL GVTT
Sbjct: 240 YEARCANVGKLLNNLQFTVEIESQLMEKVL-EKENPQNVAKEWIKANPAILDQWLSGVTT 298
Query: 294 FDGQDPSRQLERFM 307
FDGQD +++ +
Sbjct: 299 FDGQDGVAAVKKHV 312
>gi|170737470|ref|YP_001778730.1| choline ABC transporter, periplasmic binding protein [Burkholderia
cenocepacia MC0-3]
gi|254249917|ref|ZP_04943237.1| ABC-type proline/glycine betaine transport systems, periplasmic
components [Burkholderia cenocepacia PC184]
gi|124876418|gb|EAY66408.1| ABC-type proline/glycine betaine transport systems, periplasmic
components [Burkholderia cenocepacia PC184]
gi|169819658|gb|ACA94240.1| choline ABC transporter, periplasmic binding protein [Burkholderia
cenocepacia MC0-3]
Length = 315
Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats.
Identities = 131/314 (41%), Positives = 191/314 (60%), Gaps = 9/314 (2%)
Query: 1 MYKILAVCLFLTT----FSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
M ++L + S YA D C VRFAD GW+DIAATT + S +L + LGY
Sbjct: 1 MKRLLIAAVCGIGVTAPMSAVYAADPPVCKNVRFADVGWSDIAATTGLASTML-QGLGYN 59
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLA 115
+ +VP+TF +K+K ID+F+GYW P+++ I P+ + G+IK++A NL GAKY LA
Sbjct: 60 PTKTIASVPITFAGIKSKQIDVFLGYWSPTMDPIIQPFTKAGTIKVLATPNLTGAKYTLA 119
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
V D + G+KS+ DI KY +L KIYGIEPGN+GN I MI+ N+F L F+L+E+S
Sbjct: 120 VPDYVYQGGLKSFADIQKYADKLNGKIYGIEPGNDGNALIKKMIDGNQFGLGKFKLVESS 179
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSD 233
E ++ R R+ VFL WEPHP+N + I YL GG+++ +GEA V T D
Sbjct: 180 EAGMLVEVNRAARDKQWIVFLGWEPHPMNVQMKIDYLTGGDDVFGPNYGEAKVLTATPPD 239
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
Y +CPN+++ + N++F+ ++EN +M I+ NKQD L+ +P L WL GVTT
Sbjct: 240 YAQRCPNVAKFVSNLQFTTSIENHVMVPIM-NKQDPNKAAADWLKANPQALDKWLAGVTT 298
Query: 294 FDGQDPSRQLERFM 307
DG+ ++ ++
Sbjct: 299 LDGKPGLPAVKAYL 312
>gi|88799548|ref|ZP_01115124.1| ABC-type proline/glycine betaine transport system, periplasmic
component [Reinekea sp. MED297]
gi|88777633|gb|EAR08832.1| ABC-type proline/glycine betaine transport system, periplasmic
component [Reinekea sp. MED297]
Length = 306
Score = 234 bits (596), Expect = 1e-59, Method: Composition-based stats.
Identities = 133/290 (45%), Positives = 194/290 (66%), Gaps = 3/290 (1%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFM 80
A+ C VRF+D GWTDI ATTA+ S +L +GY+T+ +LL+VPVT++SL+N ID+F+
Sbjct: 17 QANQCETVRFSDVGWTDITATTAIASELL-HGMGYQTDTQLLSVPVTYKSLENGDIDVFL 75
Query: 81 GYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGA 140
G W P++E IAPY E G+++ + +NL+GAKY LAV + G+KS+ DIAK+ E
Sbjct: 76 GNWMPTMEGDIAPYREAGTVETLHKNLEGAKYTLAVPQYAYDAGVKSFADIAKFADEFDG 135
Query: 141 KIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEP 200
+IYGIEPGN+GN+ I MI+ N F L+ F L+E+SE SQ+ R R + VFL WEP
Sbjct: 136 RIYGIEPGNDGNRLIQSMIDQNAFGLEDFELVESSEAGMLSQVNRATRRDNWIVFLGWEP 195
Query: 201 HPINSDLNIHYLPGGEEISGF--GEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEM 258
HP+N++ ++ YL GG++ G G ASVYT VR Y ++C N+ LL N+ F++A ENE+
Sbjct: 196 HPMNANFDLAYLEGGDDFFGPNLGGASVYTNVRQGYAEECSNVGTLLTNLTFTLAAENEV 255
Query: 259 MKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
M LILN+ + +T L+ +PD+L WL GV T +G+ ++ ++
Sbjct: 256 MALILNDGEKPAEAAQTWLKANPDVLDAWLEGVETLEGEPALPAVKAHLD 305
>gi|167584098|ref|ZP_02376486.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia ubonensis Bu]
Length = 316
Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats.
Identities = 126/315 (40%), Positives = 190/315 (60%), Gaps = 10/315 (3%)
Query: 1 MYKILAVCLFLTTFSISYAR-----DADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M ++L + + A D C VRFAD GW+DIAATT + S +L + LGY
Sbjct: 1 MKRLLIAAACGVGIAAAPATAVYAADPPVCKTVRFADVGWSDIAATTGLASTML-QGLGY 59
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYML 114
+ +VP+TF +K+K ID+F+GYW P+++ I P+ + G+IK++A NL GAKY L
Sbjct: 60 TPTKTIASVPITFAGIKSKQIDVFLGYWSPTMDPIIQPFTKAGTIKVLATPNLTGAKYTL 119
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
AV D + G+KS+ DI K+ +L KIYGIEPGN+GN I MI+ N+F L F+L+E+
Sbjct: 120 AVPDYVYQGGLKSFADIQKFADKLNGKIYGIEPGNDGNALIKKMIDGNQFGLGKFKLVES 179
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRS 232
SE ++ R R+ VFL WEPHP+N + I YL GG+++ +GEA V T
Sbjct: 180 SEAGMLVEVNRAIRDKQWIVFLGWEPHPMNVQMKIDYLTGGDDVFGPNYGEARVLTATPP 239
Query: 233 DYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVT 292
DY +CPN+++ + N++F+ ++EN +M I+ NK++ L+ +P L WL GVT
Sbjct: 240 DYAQRCPNVAKFVSNLQFTTSIENHVMVPIM-NKEEPNKAAAAWLKANPQALDKWLAGVT 298
Query: 293 TFDGQDPSRQLERFM 307
T DG+ ++ ++
Sbjct: 299 TIDGKPGLPAVKAYL 313
>gi|288958647|ref|YP_003448988.1| glycine betaine/proline transport system substrate-binding protein
[Azospirillum sp. B510]
gi|288910955|dbj|BAI72444.1| glycine betaine/proline transport system substrate-binding protein
[Azospirillum sp. B510]
Length = 335
Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats.
Identities = 129/298 (43%), Positives = 184/298 (61%), Gaps = 3/298 (1%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
+LA + + A D SC VRF D GWTDIAATTA+ SV L + LGYK + +
Sbjct: 26 MLAAGAAVLPAGTARAADPASCKSVRFGDVGWTDIAATTALASVTL-DALGYKPTTSVSS 84
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
VPV + LK K +D+F+G W P++E FI P LE+GS+++ NL+GAKY LAV
Sbjct: 85 VPVVYLGLKTKSLDVFLGNWMPTMETFIKPVLEDGSVEVTRVNLEGAKYTLAVPTYAAEA 144
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
G+KS++D+AK+K +L KIYGIE GN+GN I M+ + F LK F+++E+SE +++
Sbjct: 145 GLKSFKDLAKFKDKLDGKIYGIEAGNDGNLIIEKMLKADAFGLKDFKMVESSEAGMLAEV 204
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNI 241
+R R FL W PHP+N ++I YL G++ FG A+V T VR Y +CPN+
Sbjct: 205 KRAVRAKKWIAFLGWAPHPMNKTMDITYLADGDDWFGPDFGGATVSTNVRKGYAAECPNL 264
Query: 242 SRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDP 299
+ L N+ F+V +EN +M I+N + + V L+ +P +LK WL GVTT DG+D
Sbjct: 265 GKFLSNLVFTVDMENAVMDGIMNGGRKPEAVAADWLKKNPAVLKTWLSGVTTLDGKDG 322
>gi|107099023|ref|ZP_01362941.1| hypothetical protein PaerPA_01000031 [Pseudomonas aeruginosa PACS2]
gi|218888776|ref|YP_002437640.1| putative glycine betaine/L-proline ABC transporter, periplasmic
substrate-binding protein [Pseudomonas aeruginosa
LESB58]
gi|254237728|ref|ZP_04931051.1| hypothetical protein PACG_03816 [Pseudomonas aeruginosa C3719]
gi|126169659|gb|EAZ55170.1| hypothetical protein PACG_03816 [Pseudomonas aeruginosa C3719]
gi|218768999|emb|CAW24757.1| putative glycine betaine/L-proline ABC transporter, periplasmic
substrate-binding protein [Pseudomonas aeruginosa
LESB58]
Length = 307
Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats.
Identities = 104/306 (33%), Positives = 166/306 (54%), Gaps = 4/306 (1%)
Query: 1 MYKILAVCLFLTTFSISYA--RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M ++ L T F S + + +C VR AD GW+DIA T A + +LE LGY+
Sbjct: 1 MNRLPTCLLAATLFLGSASLYAEDPACARVRLADPGWSDIAVTNATAAFLLES-LGYQVK 59
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
I L+VP+ + L++ +D F+G W P+ + + ++ G ++ + NL G ++ LAV
Sbjct: 60 IDTLSVPIIYGGLRDGQVDAFLGGWMPAHQDYHDKFVASGQVERLGRNLDGTRFTLAVPR 119
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ G+ ++D+A + K+YGI G NQ I MI+ N+F L ++L+E+SE A
Sbjct: 120 YVWDAGVHRFEDLAAQGQRFNRKLYGIGSGAPANQSIQKMIDANQFGLGDWKLVESSEQA 179
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+++ R ++ VFL W PHP+N ++ YL GGE+ G VYT+ R Y +C
Sbjct: 180 MLAELGRAEKRQRWLVFLGWTPHPMNIRHDLRYLEGGEQYFGD-RGQVYTLARKGYAAQC 238
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN +RLL N++F + +EN +M L R L+ +P +L+ WL GVT+ DG D
Sbjct: 239 PNPARLLANLRFDLDMENRLMSDALEGTATPASATRAWLKANPQVLEAWLQGVTSRDGGD 298
Query: 299 PSRQLE 304
+
Sbjct: 299 ALAAVR 304
>gi|159185139|ref|NP_355237.2| ABC transporter, substrate binding protein (proline/glycine
betaine) [Agrobacterium tumefaciens str. C58]
gi|159140410|gb|AAK88022.2| ABC transporter, substrate binding protein (proline/glycine
betaine) [Agrobacterium tumefaciens str. C58]
Length = 317
Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats.
Identities = 143/306 (46%), Positives = 206/306 (67%), Gaps = 4/306 (1%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
LA + TFS + A + SC VRF+D GWTDI ATTA +V+L+ LGY+T++KLL+V
Sbjct: 11 LAAAISSMTFSAAVAAEPASCGTVRFSDVGWTDITATTATATVLLKS-LGYETDVKLLSV 69
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
PVT+ SLKNK ID+F+G W P++E IAPY ++ S++ + ENL GAKY LA N G LG
Sbjct: 70 PVTYTSLKNKDIDVFLGNWMPTMEGDIAPYRDDKSVETLRENLTGAKYTLATNAKGAELG 129
Query: 125 IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
IK ++DIA + ELG KIYGIEPGN+GN+ ILDM+ + F LK F ++E+SE SQ+
Sbjct: 130 IKDFKDIAAHSSELGGKIYGIEPGNDGNRLILDMVAKDSFGLKSFEVVESSEQGMLSQVA 189
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNIS 242
R +++ P VFL WEPHP+N++ + YL GG+E+ FG A++YT VR Y+++CPN+
Sbjct: 190 RAEKSGEPIVFLGWEPHPMNANFKLTYLTGGDEVFGPNFGGATIYTNVRKGYVEECPNVG 249
Query: 243 RLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDG-QDPSR 301
LKN++FS+ +ENE+M ILN+ + + L+ +P ++ W V T DG D
Sbjct: 250 AFLKNLQFSLPMENEIMGKILNDGLEGEAAATAWLKANPAAIEPWFANVKTKDGSADALP 309
Query: 302 QLERFM 307
+++ +
Sbjct: 310 AVKKAL 315
>gi|289627018|ref|ZP_06459972.1| glycine betaine family ABC transporter, substrate-binding protein
[Pseudomonas syringae pv. aesculi str. NCPPB3681]
gi|289647918|ref|ZP_06479261.1| glycine betaine family ABC transporter, substrate-binding protein
[Pseudomonas syringae pv. aesculi str. 2250]
gi|330867909|gb|EGH02618.1| glycine betaine family ABC transporter substrate-binding protein
[Pseudomonas syringae pv. aesculi str. 0893_23]
Length = 308
Score = 233 bits (593), Expect = 3e-59, Method: Composition-based stats.
Identities = 104/309 (33%), Positives = 167/309 (54%), Gaps = 3/309 (0%)
Query: 1 MYKILAVCLFLTTFSISYARDA--DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K+ S A A SC+ V+ AD GW+DI AT A+ SV+LE LGYK
Sbjct: 1 MKKLSTAVAVAVMTFGSLAAQAEDASCSTVKMADPGWSDIGATNAIASVVLE-GLGYKAK 59
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ LAVP+ + LK+ +D+F+G W P+ + F ++ G + +A NL+G ++ LAV D
Sbjct: 60 VDTLAVPIAYGGLKDGKLDVFLGNWMPAQQGFYDKFVATGDVTQLARNLEGTEFTLAVPD 119
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ G+ + D+ K+ + KIYGI G N + ++I N+F L ++L+E+SE A
Sbjct: 120 YVWDAGVHDFADLNKFADKFDQKIYGIGSGAPANLSLQEIIKKNEFDLGKWKLVESSETA 179
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+++ R+ + VFL W PHP+N + + G E SV+T+ R Y C
Sbjct: 180 MLAEVNRNVKRKAFVVFLGWTPHPMNVQIKGMHYLKGGEKYFGDTGSVFTLTRKGYAQAC 239
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN+ +LL N+ F++ +EN +M + NNK + ++ +P +L WL GV T DG+D
Sbjct: 240 PNVGKLLTNLSFTLDMENSIMAEVANNKVSNSAAAKAWIKANPAVLDTWLEGVKTIDGKD 299
Query: 299 PSRQLERFM 307
++ +
Sbjct: 300 GLAAVKARL 308
>gi|330970352|gb|EGH70418.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. aceris str. M302273PT]
Length = 308
Score = 233 bits (593), Expect = 3e-59, Method: Composition-based stats.
Identities = 106/309 (34%), Positives = 171/309 (55%), Gaps = 3/309 (0%)
Query: 1 MYKILAVCLFLTTFSISYARDA--DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K+ S A A SC+ V+ AD GW+DIAAT A+TSV+LE LGYK
Sbjct: 1 MKKLSTAVAVAVMTLGSLAAQAEDASCSTVKMADPGWSDIAATNAITSVVLE-GLGYKPK 59
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ LAVP+ + LK+ +D+FMG W P+ + F ++ G + +A+NL+G ++ LAV D
Sbjct: 60 VDTLAVPIAYGGLKDGKLDVFMGNWMPAQQGFYDKFVATGDVTQLAKNLEGTEFTLAVPD 119
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ G+ ++ D+ K+ + KIYGI G N + ++I N+F L ++L+E+SE A
Sbjct: 120 YVWDAGVHNFADLNKFADKFDKKIYGIGSGAPANLSLQEIIKKNEFDLGKWKLVESSETA 179
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+++ R+ + VFL W PHP+N + + G E SV+T+ R Y C
Sbjct: 180 MLAEVNRNVKKKAFVVFLGWTPHPMNVQIKGMHYLKGGEKYFGDTGSVFTLTRKGYAQAC 239
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN+ +LL N+ F++ +EN +M ++N K + ++ +P +L WL GV T DG+D
Sbjct: 240 PNVGKLLTNLSFTLDMENSIMAEVVNKKVSNSEAAKAWIKANPAVLDKWLEGVQTVDGKD 299
Query: 299 PSRQLERFM 307
++ +
Sbjct: 300 GLAAVKAKL 308
>gi|332557612|ref|ZP_08411934.1| substrate-binding region of ABC-type glycine betaine transport
system [Rhodobacter sphaeroides WS8N]
gi|332275324|gb|EGJ20639.1| substrate-binding region of ABC-type glycine betaine transport
system [Rhodobacter sphaeroides WS8N]
Length = 308
Score = 233 bits (593), Expect = 3e-59, Method: Composition-based stats.
Identities = 118/291 (40%), Positives = 176/291 (60%), Gaps = 3/291 (1%)
Query: 17 SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGI 76
A D C V F+D GWTDI TT+ T +LE LGY+ + +L VPVT+ S+ +
Sbjct: 19 GTALAQDQCREVTFSDVGWTDITVTTSATRQVLEA-LGYEVEVDILGVPVTYASMDKGDV 77
Query: 77 DIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKK 136
D+F+G W P+ E I PYLE+GSI+ + NL+G KY LAV + G+KSY DIAK+K
Sbjct: 78 DVFLGTWLPAQESAIGPYLEKGSIEEITTNLEGTKYTLAVPTYLYDKGLKSYGDIAKFKD 137
Query: 137 ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFL 196
EL K+YGIEPGNEGN+ ++ + L+GF ++++SE +Q+ R VFL
Sbjct: 138 ELEGKVYGIEPGNEGNEYLISLTEA-GKPLEGFEVVQSSEQGMLAQVARFYPQEKGVVFL 196
Query: 197 SWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALEN 256
WEPHP+N+ ++ YLPGGE+ G + V TV R + + CPN++++L F++ +EN
Sbjct: 197 GWEPHPMNASFSLKYLPGGEDFFGE-DGVVKTVARKGFKEDCPNVTKMLSQQTFTLPMEN 255
Query: 257 EMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
E+M IL++ + L+ +P+ + WL GVTT DG+D ++ +
Sbjct: 256 EIMGKILDDGMEPDAAVMEWLKANPETVDPWLAGVTTVDGKDALPVVKEAL 306
>gi|77456253|ref|YP_345758.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas fluorescens Pf0-1]
gi|77380256|gb|ABA71769.1| putative ABC transport system, substrate-binding protein
[Pseudomonas fluorescens Pf0-1]
Length = 305
Score = 233 bits (593), Expect = 3e-59, Method: Composition-based stats.
Identities = 110/307 (35%), Positives = 173/307 (56%), Gaps = 2/307 (0%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K+ V S + A+SC V+ AD GW+DIAAT A+T +L + +GYK +
Sbjct: 1 MVKLSTVVTVSLLALGSASAFAESCDTVKMADPGWSDIAATNAITGFLL-DGMGYKAKVD 59
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
LAVP+TF LK+ +D+F+G W P+ + F ++ G + +A+NL G ++ LAV D
Sbjct: 60 TLAVPITFGGLKDGQVDVFLGNWMPAQQGFYDKFVATGDVTQLAKNLDGTEFTLAVPDYV 119
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ G+ ++ D+ KY + KIYGI G N + ++I N F L ++LIE+SE A
Sbjct: 120 WDAGVHNFADLNKYADKFEKKIYGIGSGAPANISLQEIIKKNDFDLGQWKLIESSEQAML 179
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+++ R + FL W PHP+N L +HYL GGE+ G + VYT+ R Y + CPN
Sbjct: 180 AEVSRAVKKQKFVTFLGWTPHPMNVQLKMHYLKGGEKYFGDTGS-VYTLTRKGYAEACPN 238
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPS 300
+ +LL N+ F+ +EN +M ++N K + ++ +P +L WL GV T DG+D
Sbjct: 239 VGKLLTNLAFTQEMENSIMAEVVNKKVSNAEAVKAWIKANPGVLDKWLDGVKTVDGKDAL 298
Query: 301 RQLERFM 307
++ +
Sbjct: 299 PAVKAKL 305
>gi|77462730|ref|YP_352234.1| ABC glycine betaine/L-proline transporter, periplasmic
substrate-binding subunit [Rhodobacter sphaeroides
2.4.1]
gi|126461622|ref|YP_001042736.1| substrate-binding region of ABC-type glycine betaine transport
system [Rhodobacter sphaeroides ATCC 17029]
gi|77387148|gb|ABA78333.1| ABC glycine betaine/L-proline transporter, periplasmic
substrate-binding subunit [Rhodobacter sphaeroides
2.4.1]
gi|126103286|gb|ABN75964.1| Substrate-binding region of ABC-type glycine betaine transport
system [Rhodobacter sphaeroides ATCC 17029]
Length = 308
Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats.
Identities = 119/291 (40%), Positives = 177/291 (60%), Gaps = 3/291 (1%)
Query: 17 SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGI 76
A D C V F+D GWTDI TT+ T +LE LGY+ + +L VPVT+ S+ +
Sbjct: 19 GTALAQDQCREVTFSDVGWTDITVTTSATRQVLEA-LGYEVEVDILGVPVTYASMDKGDV 77
Query: 77 DIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKK 136
D+F+G W P+ E I PYLE+GSI+ + NL+G KY LAV + G+KSY DIAK+K
Sbjct: 78 DVFLGTWLPAQESAIGPYLEKGSIEEITTNLEGTKYTLAVPTYLYDKGLKSYGDIAKFKD 137
Query: 137 ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFL 196
EL K+YGIEPGNEGN+ ++ + L+GF ++++SE +Q+ R VFL
Sbjct: 138 ELEGKVYGIEPGNEGNEYLISLTEA-GKPLEGFEVVQSSEQGMLAQVARFYPQEKGVVFL 196
Query: 197 SWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALEN 256
WEPHP+N+ ++ YLPGGE+ G + V TV R + + CPN++++L KF++ +EN
Sbjct: 197 GWEPHPMNATFSLKYLPGGEDFFGE-DGVVKTVARKGFKEDCPNVTKMLSQQKFTLPMEN 255
Query: 257 EMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
E+M IL++ + L+ +P+ + WL GVTT DG+D ++ +
Sbjct: 256 EIMGKILDDGMEPDAAVMEWLKANPETVDPWLAGVTTVDGKDALPVVKEAL 306
>gi|330970916|gb|EGH70982.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. aceris str. M302273PT]
Length = 315
Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats.
Identities = 123/314 (39%), Positives = 190/314 (60%), Gaps = 8/314 (2%)
Query: 1 MY--KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K L + L ++ A + ++C F+D GWTDI TTA+TS +LE LGYKT
Sbjct: 1 MKGSKSLLLAATLCIPVLAQAAEPEACHTANFSDVGWTDITVTTAVTSAVLES-LGYKTK 59
Query: 59 IKLLAVPVTFRSLKNK-GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+++VPVT++SL + +D+F+G W P++E I PY E G+++ V NL+ AKY LAV
Sbjct: 60 TTMISVPVTYKSLADGKNMDVFLGNWMPTMENDIKPYREAGTVETVRANLENAKYTLAVP 119
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN--NNKFSLKGFRLIEAS 175
+ + G+ + DIAK+KKELG KIYGIEPGN+GN+ I MI+ GF+++E+S
Sbjct: 120 EALYDKGLHDFADIAKFKKELGGKIYGIEPGNDGNRLIQSMIDKNAFGLKDAGFKVVESS 179
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSD 233
E A SQ+ R + VFL WEPHP+N+ + YL GG++ +G+A++YT R
Sbjct: 180 EAAMLSQVDRAVKRKNDVVFLGWEPHPMNTRFKMKYLTGGDDFFGPNYGQATIYTNTRKG 239
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
Y +C N+ +LLKN+ F++ +E+ +M +L++K + ++ +P +L WL GV T
Sbjct: 240 YSQECSNVGQLLKNLSFTLNMESTLMGNVLDDKMKPDAAAKAWIKKNPQVLDTWLAGVNT 299
Query: 294 FDGQDPSRQLERFM 307
DG+ + +
Sbjct: 300 VDGKPGLEAAKAKL 313
>gi|221638591|ref|YP_002524853.1| Substrate-binding region of ABC-type glycine betaine transport
system [Rhodobacter sphaeroides KD131]
gi|221159372|gb|ACM00352.1| Substrate-binding region of ABC-type glycine betaine transport
system precursor [Rhodobacter sphaeroides KD131]
Length = 308
Score = 232 bits (591), Expect = 5e-59, Method: Composition-based stats.
Identities = 119/291 (40%), Positives = 176/291 (60%), Gaps = 3/291 (1%)
Query: 17 SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGI 76
A D C V F+D GWTDI TT+ T +LE LGY + +L VPVT+ S+ +
Sbjct: 19 GTALAQDQCREVTFSDVGWTDITVTTSATRQVLEA-LGYDVEVDILGVPVTYASMDKGDV 77
Query: 77 DIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKK 136
D+F+G W P+ E I PYLE+GSI+ + NL+G KY LAV + G+KSY DIAK+K
Sbjct: 78 DVFLGTWLPAQESAIGPYLEKGSIEEITTNLEGTKYTLAVPTYLYDKGLKSYGDIAKFKD 137
Query: 137 ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFL 196
EL K+YGIEPGNEGN+ ++ + L+GF ++++SE +Q+ R VFL
Sbjct: 138 ELEGKVYGIEPGNEGNEYLISLTEA-GKPLEGFEVVQSSEQGMLAQVARFYPQEKGVVFL 196
Query: 197 SWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALEN 256
WEPHP+N+ ++ YLPGGE+ G + V TV R + + CPN++++L KF++ +EN
Sbjct: 197 GWEPHPMNATFSLKYLPGGEDFFGE-DGVVKTVARKGFKEDCPNVTKMLSQQKFTLPMEN 255
Query: 257 EMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
E+M IL++ + L+ +P+ + WL GVTT DG+D ++ +
Sbjct: 256 EIMGKILDDGMEPDAAVMEWLKANPETVDPWLAGVTTVDGKDALPVVKEAL 306
>gi|298484637|ref|ZP_07002740.1| predicted substrate binding domain of an ABC superfamily
glycine/betaine transporter [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|298160777|gb|EFI01795.1| predicted substrate binding domain of an ABC superfamily
glycine/betaine transporter [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
Length = 308
Score = 232 bits (591), Expect = 5e-59, Method: Composition-based stats.
Identities = 105/309 (33%), Positives = 166/309 (53%), Gaps = 3/309 (0%)
Query: 1 MYKILAVCLFLTTFSISYARDA--DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K+ S A A SC+ V+ AD GW+DI AT A+ SV LE LGYK
Sbjct: 1 MKKLSTAVAIAVMTFGSLAAQAEDASCSTVKMADPGWSDIGATNAIASVALE-GLGYKAK 59
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ LAVP+ + LK+ +D+F+G W P+ + F ++ G + +A NL+G ++ LAV D
Sbjct: 60 VDTLAVPIAYGGLKDGKLDVFLGNWMPAQQGFYDKFVATGDVTQLARNLEGTEFTLAVPD 119
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ G+ + D+ K+ + KIYGI G N + ++I N+F L ++L+E+SE A
Sbjct: 120 YVWDAGVHDFADLNKFADKFDQKIYGIGSGAPANLSLQEIIKKNEFDLGKWKLVESSETA 179
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+++ R+ + VFL W PHP+N + + G E SV+T+ R Y C
Sbjct: 180 MLAEVNRNVKRKAFVVFLGWTPHPMNVQIKGMHYLKGGEKYFGDTGSVFTLTRKGYAQAC 239
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN+ +LL N+ F++ +EN +M + NNK R ++ +P +L WL GV T DG+D
Sbjct: 240 PNVGKLLTNLSFTLDMENSIMAEVANNKVSNSAAARAWIKANPAVLDTWLEGVKTIDGKD 299
Query: 299 PSRQLERFM 307
++ +
Sbjct: 300 GLAAVKARL 308
>gi|330952307|gb|EGH52567.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae Cit 7]
Length = 308
Score = 232 bits (591), Expect = 5e-59, Method: Composition-based stats.
Identities = 104/309 (33%), Positives = 170/309 (55%), Gaps = 3/309 (0%)
Query: 1 MYKILAVCLFLTTFSISYARDA--DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K+ S A A SC+ V+ AD GW+DIAAT A+TSV+LE LGY
Sbjct: 1 MKKLSTAVAVAVMTFGSLAAQAEDASCSTVKMADPGWSDIAATNAITSVVLE-GLGYTPK 59
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ LAVP+ + LK+ +D+F+G W P+ + F ++ G + +A+NL+G ++ LAV D
Sbjct: 60 VDTLAVPIAYGGLKDGKLDVFLGNWMPAQQGFYDKFVATGDVTQLAKNLEGTEFTLAVPD 119
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ G+ ++ D+ K+ + KIYGI G N + ++I N+F L ++L+E+SE A
Sbjct: 120 YVWEAGVHNFADLNKFADKFDKKIYGIGSGAPANLSLQEIIKKNEFDLGKWKLVESSETA 179
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+++ R+ + VFL W PHP+N + + G E SV+T+ R Y C
Sbjct: 180 MLAEVNRNVKKKAFVVFLGWTPHPMNVQIKGMHYLKGGEKYFGDTGSVFTLTRKGYAQAC 239
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN+ +LL N+ F++ +EN +M ++N K + ++ +P +L WL GV T DG+D
Sbjct: 240 PNVGKLLTNLSFTLDMENSIMAEVVNKKVSNSEAAKAWIKANPAVLDKWLEGVQTADGKD 299
Query: 299 PSRQLERFM 307
++ +
Sbjct: 300 GLAAVKARL 308
>gi|15595228|ref|NP_248720.1| hypothetical protein PA0030 [Pseudomonas aeruginosa PAO1]
gi|254243141|ref|ZP_04936463.1| hypothetical protein PA2G_03940 [Pseudomonas aeruginosa 2192]
gi|9945850|gb|AAG03420.1|AE004442_7 hypothetical protein PA0030 [Pseudomonas aeruginosa PAO1]
gi|126196519|gb|EAZ60582.1| hypothetical protein PA2G_03940 [Pseudomonas aeruginosa 2192]
Length = 307
Score = 232 bits (591), Expect = 5e-59, Method: Composition-based stats.
Identities = 104/306 (33%), Positives = 166/306 (54%), Gaps = 4/306 (1%)
Query: 1 MYKILAVCLFLTTFSISYA--RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M ++ L T F S + + +C VR AD GW+DIA T A + +LE LGY+
Sbjct: 1 MNRLPTCLLAATLFLGSASLYAEDPACARVRLADPGWSDIAVTNATAAFLLES-LGYQVK 59
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
I L+VP+ + L++ +D F+G W P+ + + ++ G ++ + NL G ++ LAV
Sbjct: 60 IDTLSVPIIYGGLRDGQVDAFLGGWMPAHQDYHDKFVASGQVERLGRNLDGTRFTLAVPR 119
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ G+ ++D+A + K+YGI G NQ I MI+ N+F L ++L+E+SE A
Sbjct: 120 YVWDAGVHRFEDLAAQGQRFNRKLYGIGSGAPANQSIQKMIDANQFGLGDWKLVESSEQA 179
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+++ R ++ VFL W PHP+N ++ YL GGE+ G VYT+ R Y +C
Sbjct: 180 MLAELGRAEKRQRWLVFLGWTPHPMNIRHDLRYLEGGEQYFGD-RGQVYTLARKGYAAQC 238
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN +RLL N++F + +EN +M L R L+ +P +L+ WL GVT+ DG D
Sbjct: 239 PNPARLLANLRFDLDMENRLMSDALEGTATPASATRAWLKANPRVLEAWLQGVTSRDGGD 298
Query: 299 PSRQLE 304
+
Sbjct: 299 ALAAVR 304
>gi|104779346|ref|YP_605844.1| glycine betaine-binding protein [Pseudomonas entomophila L48]
gi|95108333|emb|CAK13027.1| putative glycine betaine-binding protein [Pseudomonas entomophila
L48]
Length = 307
Score = 232 bits (591), Expect = 5e-59, Method: Composition-based stats.
Identities = 112/309 (36%), Positives = 178/309 (57%), Gaps = 4/309 (1%)
Query: 1 MYKI-LAVCLFLTTFSISYARDAD-SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K AV + ++A D + C+ V+ AD GW+DIA+T A+ ++LE LGY+
Sbjct: 1 MQKFSTAVLALALSLGTAHAADGNVQCSTVKLADPGWSDIASTNAVARLLLE-NLGYQVK 59
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
I LAVP+ + LK+ +D F+G W P+ + F ++ G ++ +A NL+G ++ LAV D
Sbjct: 60 IDSLAVPIIYGGLKDGRVDAFLGNWMPAQQGFHDKFIANGDVQQLARNLEGTEFTLAVPD 119
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ G+K + D+ KY + K+YGI G N + ++I+ N F+L ++L+E+SE A
Sbjct: 120 YVWEAGVKDFADLHKYADKFDKKLYGIGSGAPANLSLKEIIDKNDFALGQWKLVESSEQA 179
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+Q+ R + FL W PHP+N L +HYL GGE+ G + VYT+ R Y C
Sbjct: 180 MLAQVDRAVKKQQFITFLGWTPHPMNVKLKMHYLTGGEQWFGS-KGDVYTLTRKGYPQAC 238
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN ++LL N+ F++ +EN +M +++ K R ++ HP+LL WL GVT+ DG D
Sbjct: 239 PNAAKLLSNLTFTLEMENSIMAEVVDKKVSFDEAARRWVKAHPELLDGWLAGVTSKDGGD 298
Query: 299 PSRQLERFM 307
S L+ +
Sbjct: 299 ASEVLKAKL 307
>gi|330501437|ref|YP_004378306.1| glycine betaine ABC transporter substrate-binding protein
[Pseudomonas mendocina NK-01]
gi|328915723|gb|AEB56554.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas mendocina NK-01]
Length = 314
Score = 232 bits (591), Expect = 5e-59, Method: Composition-based stats.
Identities = 132/311 (42%), Positives = 200/311 (64%), Gaps = 7/311 (2%)
Query: 2 YKILAVCLFLTTFSI--SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K A L+ + + A + SC VRFA+ GW DIAATT + ++E LGY+
Sbjct: 4 FKTTAAIGLLSCALMQGAMAAEPASCKQVRFAEIGWADIAATTGVAMTLVE-GLGYQPRK 62
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLV-AENLQGAKYMLAVND 118
+ +VP+ F +K+ +D+F+GYW PS++ I P+L++G +K++ NL+GAKY LAV
Sbjct: 63 IMASVPIAFTGVKSGQVDVFLGYWAPSMDSVIEPFLKDGGVKVLEKANLEGAKYTLAVPT 122
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
G+KS+QDIAK+K +LG KIYGIEPGN+GN I MI NN+F L FR++E+SE
Sbjct: 123 YAAEAGLKSFQDIAKFKDQLGGKIYGIEPGNDGNLLIDGMIKNNQFDLGDFRMVESSEAG 182
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLD 236
Q+ R + P VFL W PHP+N+ +I YL GG+++ +G A VYTVV DY
Sbjct: 183 MLVQVSRAIKKKEPVVFLGWAPHPMNTQHDITYLSGGDDVFGPDYGAAKVYTVVPPDYEA 242
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDG 296
+C N+ +LL N++F+V +E+++M+ +L K++ Q V + ++ +P +L WL GVTTFDG
Sbjct: 243 RCENVGKLLNNLQFTVDIESQLMEKVL-EKENPQNVAKEWIKANPAILDQWLSGVTTFDG 301
Query: 297 QDPSRQLERFM 307
QD +++ +
Sbjct: 302 QDGVAAVKKHV 312
>gi|330965114|gb|EGH65374.1| glycine/betaine family, ABC transporter substrate-binding protein
[Pseudomonas syringae pv. actinidiae str. M302091]
Length = 308
Score = 232 bits (591), Expect = 5e-59, Method: Composition-based stats.
Identities = 103/309 (33%), Positives = 169/309 (54%), Gaps = 3/309 (0%)
Query: 1 MYKILAVCLFLTTFSISYARDA--DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K+ S+A A SC+ V+ AD GW+DIAAT A+T V+LE LGYK
Sbjct: 1 MKKLSTTVAVAVMTFGSFAAQAEDASCSTVKMADPGWSDIAATNAITGVVLE-GLGYKAK 59
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ LAVP+ + LK+ +D+F+G W P+ + F ++ G + +A NL+G ++ LAV D
Sbjct: 60 VDTLAVPIAYGGLKDGKLDVFLGNWMPAQQGFYDKFVATGDVTQLARNLEGTEFTLAVPD 119
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ G+ + D++K+ ++ KIYGI G N + ++I N+F L ++L+E+SE A
Sbjct: 120 YVWEAGVHDFADLSKFAEKFDKKIYGIGSGAPANLSLQEIIKKNEFDLGQWKLVESSEQA 179
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+++ R+ + VF W PHP+N + + G E SV+T+ R Y C
Sbjct: 180 MLAEVNRNVKKKEFVVFPGWTPHPMNVQIKGMHYLKGGEKYFGDTGSVFTLTRKGYAQAC 239
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN+ +LL N+ F++ +EN +M + N K + ++ +P +L WL GV T DG+D
Sbjct: 240 PNVGKLLTNLSFTLDMENSIMAEVTNKKVSNSAAAKAWIKANPAVLDKWLEGVKTIDGKD 299
Query: 299 PSRQLERFM 307
++ +
Sbjct: 300 GLAVVKAGL 308
>gi|77456597|ref|YP_346102.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas fluorescens Pf0-1]
gi|77380600|gb|ABA72113.1| putative glycine betaine/L-proline-binding protein ABC transporter
component [Pseudomonas fluorescens Pf0-1]
Length = 338
Score = 232 bits (591), Expect = 6e-59, Method: Composition-based stats.
Identities = 122/317 (38%), Positives = 185/317 (58%), Gaps = 10/317 (3%)
Query: 1 MYKILAVCLFLTTFSI-----SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M K+ C + T S + A D SC VR WTD+ AT+ M V+L LGY
Sbjct: 24 MKKLFTRCALILTGSALLSAGAMASDDASCKTVRMGVVNWTDVIATSGMADVLL-NGLGY 82
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYML 114
++ + F +++K +DIF+GYW P+++K IAP+L +K++ +L A+ L
Sbjct: 83 ESKQTSAVQQIIFAGIRDKRLDIFLGYWKPAMDKNIAPFLAANQVKVMDKPSLADAQATL 142
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
AV D A G+K++ DIAK+K +LG KIYGIEPG+ N I MI N F LK F++IE+
Sbjct: 143 AVPDYVAAAGLKTFGDIAKFKDQLGGKIYGIEPGSGANTTIKTMIETNHFGLKDFKIIES 202
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRS 232
E + ++R VF+ W PHP+N ++ I YL G E++ G A+V TV
Sbjct: 203 GEAGMLAAVQRAVNRKEFVVFVGWTPHPMNINMKITYLTGSEDVYGPNEGAATVSTVTAP 262
Query: 233 DYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVT 292
DY ++CPN+ RLL+N+ F+ A E+++M I+ ++ Q V +T LR HP+ L+ WL GV+
Sbjct: 263 DYAERCPNVHRLLENLTFTAAQESQLMVPIM-ERKTPQEVAKTWLREHPEDLQRWLAGVS 321
Query: 293 TFDGQDPSRQLERFMNN 309
+FDG+D ++ + N
Sbjct: 322 SFDGKDGVATVQASLKN 338
>gi|330901106|gb|EGH32525.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. japonica str.
M301072PT]
Length = 308
Score = 232 bits (591), Expect = 6e-59, Method: Composition-based stats.
Identities = 104/309 (33%), Positives = 170/309 (55%), Gaps = 3/309 (0%)
Query: 1 MYKILAVCLFLTTFSISYARDA--DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K+ S A A SC+ V+ AD GW+DIAAT A+TSV+LE LGY
Sbjct: 1 MKKLFTAVAVAVMTLGSLAAQAEDASCSTVKMADPGWSDIAATNAITSVVLE-GLGYTPK 59
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ LAVP+ + LK+ +D+F+G W P+ + F ++ G + +A+NL+G ++ LAV D
Sbjct: 60 VDTLAVPIAYGGLKDGKLDVFLGNWMPAQQGFYDKFVATGDVTQLAKNLEGTEFTLAVPD 119
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ G+ ++ D+ K+ + KIYGI G N + ++I N+F L ++L+E+SE A
Sbjct: 120 YVWDAGVHNFADLNKFADKFDKKIYGIGSGAPANLSLQEIIKKNEFDLGKWKLVESSETA 179
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+++ R+ + VFL W PHP+N + + G E SV+T+ R Y C
Sbjct: 180 MLAEVNRNVKKKAFVVFLGWTPHPMNVQIKGMHYLKGGEKYFGDTGSVFTLTRKGYAQAC 239
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN+ +LL N+ F++ +EN +M ++N K + ++ +P +L WL GV T DG+D
Sbjct: 240 PNVGKLLTNLSFTLDMENSIMAEVVNKKVSNGEAAKAWIKANPAVLDKWLEGVQTVDGKD 299
Query: 299 PSRQLERFM 307
++ +
Sbjct: 300 GLATVKARL 308
>gi|13472448|ref|NP_104015.1| ABC transporter binding protein [Mesorhizobium loti MAFF303099]
gi|14023194|dbj|BAB49801.1| ABC transporter binding protein [Mesorhizobium loti MAFF303099]
Length = 308
Score = 232 bits (590), Expect = 7e-59, Method: Composition-based stats.
Identities = 130/302 (43%), Positives = 184/302 (60%), Gaps = 3/302 (0%)
Query: 8 CLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVT 67
L + S ++A DA+SC VR +D GWTDI ATT + SV+L LGY+ + L+VPVT
Sbjct: 10 LAALLSTSAAFAGDAESCKTVRLSDVGWTDIQATTGLASVLL-TALGYEPKVIQLSVPVT 68
Query: 68 FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKS 127
SLKNK +D+F+G W PS+ I Y +GS++ ++ NL GA Y + V G+KS
Sbjct: 69 MASLKNKDLDVFLGNWMPSMTNDIKDYTADGSVETISTNLTGAGYGIVVPTYVADAGVKS 128
Query: 128 YQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQ 187
D+ K+K + KIYGIE GN+GN+ ILDMI N K +L+GF L+E+SE +Q +
Sbjct: 129 LTDLGKFKDKFNGKIYGIEAGNDGNRIILDMIKNPKDNLEGFELVESSEAGMLTQAEQSM 188
Query: 188 RNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKN 247
+NN FL W PHP+ + I YL G SGFG A+V+T VR Y +CPN + + N
Sbjct: 189 KNNEWIAFLGWTPHPVMGAMKITYL-DGMGDSGFGAATVFTNVRKGYTTECPNAGKFIAN 247
Query: 248 IKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+KF++ +E +MM IL D Q V L+ +PD +K W+ GVTTFDG D + ++ +
Sbjct: 248 LKFNLDMEGQMMDAIL-KGADAQTVATDWLKKNPDAVKPWIAGVTTFDGGDAAAAVKTAL 306
Query: 308 NN 309
+
Sbjct: 307 GS 308
>gi|66043299|ref|YP_233140.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. syringae B728a]
gi|63254006|gb|AAY35102.1| Substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. syringae B728a]
Length = 308
Score = 232 bits (590), Expect = 7e-59, Method: Composition-based stats.
Identities = 104/309 (33%), Positives = 171/309 (55%), Gaps = 3/309 (0%)
Query: 1 MYKILAVCLFLTTFSISYARDA--DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K+ S A A SC+ V+ AD GW+DIAAT A+TSV+LE LGY
Sbjct: 1 MKKLSTAVAVAVMTLGSLAAQAEDASCSTVKMADPGWSDIAATNAITSVVLE-GLGYTPK 59
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ LAVP+ + LK+ +D+F+G W P+ + F ++ G + +A+NL+G ++ LAV D
Sbjct: 60 VDTLAVPIAYGGLKDGKLDVFLGNWMPAQQGFYDKFVATGDVTQLAKNLEGTEFTLAVPD 119
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ G+ + D++K+ + KIYGI G N + ++I N+F L ++L+E+SE A
Sbjct: 120 YVWDAGVHDFADLSKFADKFDKKIYGIGSGAPANLSLQEIIKKNEFDLGKWKLVESSETA 179
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+++ R+ + VFL W PHP+N + + G E SV+T+ R Y C
Sbjct: 180 MLAEVNRNVKKKAFVVFLGWTPHPMNVQIKGMHYLKGGEKYFGDTGSVFTLTRKGYAQAC 239
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN+ +LL N+ F++ +EN +M ++N K ++ ++ +P +L WL GV T DG+D
Sbjct: 240 PNVGKLLTNLSFTLDMENSIMAEVVNKKVSNSEAAKSWIKANPTVLDKWLEGVKTVDGKD 299
Query: 299 PSRQLERFM 307
++ +
Sbjct: 300 GLAAVKAKL 308
>gi|153010243|ref|YP_001371457.1| substrate-binding region of ABC-type glycine betaine transport
system [Ochrobactrum anthropi ATCC 49188]
gi|151562131|gb|ABS15628.1| Substrate-binding region of ABC-type glycine betaine transport
system [Ochrobactrum anthropi ATCC 49188]
Length = 308
Score = 232 bits (590), Expect = 8e-59, Method: Composition-based stats.
Identities = 127/309 (41%), Positives = 184/309 (59%), Gaps = 5/309 (1%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M ++ + ++A + +C +F+D GWTDI ATTA+ S++LE+ GY+
Sbjct: 1 MKRLFLLLAASVASVQAHAAEGANCKAPKFSDVGWTDITATTALASLLLEKA-GYEPQTT 59
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+L+VPVTF+SL+N IDIF+G W P E+ PYLE I+ NL+GAK LA G
Sbjct: 60 ILSVPVTFQSLENGQIDIFLGNWMPLQEEARKPYLEGKKIEQAGVNLEGAKIGLA--ATG 117
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
LGIK+Y DIAK+K +LG KIYGIE G+ N I M+ +KF LK F+L E+SE A
Sbjct: 118 KDLGIKNYADIAKFKDQLGGKIYGIEAGSSANATIQSMVEQDKFGLKDFQLAESSEQAML 177
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKC 238
SQ++ R + P VF +W PHP+N + YL GE + G A+V T+ R Y C
Sbjct: 178 SQVQNAVRKDEPVVFFAWTPHPMNIRYKLTYLENGENLFGPDDGAATVETLTRKGYATDC 237
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN+SR + N+KF+ +E+ MM +ILN+ + + ++ +P L WL GVTTFDG+
Sbjct: 238 PNVSRFVSNLKFNTDMESTMMNMILNDGMEAKDAVTKWIKENPAQLDAWLDGVTTFDGKP 297
Query: 299 PSRQLERFM 307
+++ +
Sbjct: 298 ALAEVKSGL 306
>gi|170697539|ref|ZP_02888629.1| choline ABC transporter, periplasmic binding protein [Burkholderia
ambifaria IOP40-10]
gi|170137562|gb|EDT05800.1| choline ABC transporter, periplasmic binding protein [Burkholderia
ambifaria IOP40-10]
Length = 315
Score = 232 bits (590), Expect = 8e-59, Method: Composition-based stats.
Identities = 130/314 (41%), Positives = 191/314 (60%), Gaps = 9/314 (2%)
Query: 1 MYKILAVCLFLTTFSISY----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
M ++L + + A D C VRFAD GW+DIAATT + S +L + LGY
Sbjct: 1 MKRLLIATVCGIGIAAPMSAVHAADPPVCKNVRFADVGWSDIAATTGLASTML-QGLGYA 59
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLA 115
+ +VP+TF +K+K ID+F+GYW P+++ I P+ + G+IK++A NL GAKY LA
Sbjct: 60 PTKTIASVPITFAGIKSKQIDVFLGYWSPTMDPIIQPFTKAGTIKVLATPNLTGAKYTLA 119
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
V D + G+KS+ DI KY +L KIYGIEPGN+GN I MI+ N+F L F+L+E+S
Sbjct: 120 VPDYVYQGGLKSFADIQKYADKLNGKIYGIEPGNDGNALIKKMIDTNQFGLGKFKLVESS 179
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSD 233
E ++ R R+ VFL WEPHP+N + I YL GG+++ FGEA V T D
Sbjct: 180 EAGMLIEVNRAARDKQWIVFLGWEPHPMNVQMKIDYLTGGDDVFGPNFGEAKVLTATPPD 239
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
Y +CPN+++ + N++F+ A+EN +M I+ NK+D L+ +P L+ WL GVTT
Sbjct: 240 YAQRCPNVAKFVSNLQFTTAIENHVMVPIM-NKEDPNKAAAAWLKANPQSLEKWLAGVTT 298
Query: 294 FDGQDPSRQLERFM 307
DG+ ++ ++
Sbjct: 299 LDGKPGLPAVKAYL 312
>gi|254472334|ref|ZP_05085734.1| proline/glycine betaine ABC transporter, substrate-binding protein
[Pseudovibrio sp. JE062]
gi|211958617|gb|EEA93817.1| proline/glycine betaine ABC transporter, substrate-binding protein
[Pseudovibrio sp. JE062]
Length = 318
Score = 231 bits (589), Expect = 8e-59, Method: Composition-based stats.
Identities = 134/308 (43%), Positives = 193/308 (62%), Gaps = 4/308 (1%)
Query: 2 YKI-LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
K+ + + L + A +A++C VRF+D GWTDI ATTA + +L + +GY+T++K
Sbjct: 9 KKLSTSASVLLLITGSALAAEAEACKTVRFSDVGWTDITATTATATSVL-DAIGYETDVK 67
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+L+VPVT+ SL N ID+F+G W P++E IA Y E G++ V NL GAKY LAV
Sbjct: 68 VLSVPVTYASLANNDIDVFLGNWMPTMEADIAKYREAGTVDTVQTNLTGAKYTLAVPKYT 127
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ G+K + DIAK+ +L +IYGIE GN+GN+ ILDMI N F LKGF L+E+SE
Sbjct: 128 YDKGLKDFADIAKFSGDLDGEIYGIEAGNDGNRLILDMIEKNAFGLKGFELVESSEAGML 187
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKC 238
SQ+ R R + VFL W PHP+NS+ + YL GG+E FG A V T R+ Y +C
Sbjct: 188 SQVARKTRKDQDIVFLGWAPHPMNSNFELKYLTGGDEFFGPNFGGADVLTNTRAGYSAEC 247
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
N+ + L+N+ FS+ +ENE+M ILN+ ++ + ++ +P+ L WL GVTTFDG+D
Sbjct: 248 ANMGKFLQNLTFSLEMENEIMNAILNDGEEPTDAAKAWIKKNPESLDKWLAGVTTFDGKD 307
Query: 299 PSRQLERF 306
+
Sbjct: 308 GLAAAKAA 315
>gi|170719282|ref|YP_001746970.1| choline ABC transporter periplasmic binding protein [Pseudomonas
putida W619]
gi|169757285|gb|ACA70601.1| choline ABC transporter, periplasmic binding protein [Pseudomonas
putida W619]
Length = 307
Score = 231 bits (589), Expect = 8e-59, Method: Composition-based stats.
Identities = 108/309 (34%), Positives = 175/309 (56%), Gaps = 4/309 (1%)
Query: 1 MYK--ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K + L L+ + + + C+ VR AD GW+DIA T A+ ++LE LGY+
Sbjct: 1 MQKFSTIVFALALSLGTATAHAENAQCSTVRMADPGWSDIATTNAIARLLLES-LGYQVK 59
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
I LAVP+ + LK+ +D F+G W P+ + F ++ G + ++ NL+G ++ LAV D
Sbjct: 60 IDSLAVPIIYGGLKDGKVDAFLGNWMPAHQGFHDKFVANGDVHQLSRNLEGTEFTLAVPD 119
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ G+KS+ D+ ++ + K+YGI G N + ++I+ N+F L ++L+E+SE A
Sbjct: 120 YVWDAGVKSFADLQQHADQFDKKLYGIGSGAPANLSLKEIIDKNEFDLGQWKLVESSEQA 179
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+Q+ R + N FL W PHP+N L +HYL GGE+ G + VYT+ R Y C
Sbjct: 180 MLAQVDRAVKKNQYITFLGWTPHPMNVKLKMHYLTGGEKWFGS-KGEVYTLTRKGYPQAC 238
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN ++LL N+ F++ +EN +M +++ K + ++ HPDLL+ WL GVTT G D
Sbjct: 239 PNPAKLLGNLTFTLDMENSIMAEVVDKKISFDEAAKAWVKAHPDLLQKWLDGVTTSSGGD 298
Query: 299 PSRQLERFM 307
+ +
Sbjct: 299 AKEAVNAKL 307
>gi|152988567|ref|YP_001345427.1| hypothetical protein PSPA7_0031 [Pseudomonas aeruginosa PA7]
gi|150963725|gb|ABR85750.1| hypothetical protein PSPA7_0031 [Pseudomonas aeruginosa PA7]
Length = 307
Score = 231 bits (589), Expect = 8e-59, Method: Composition-based stats.
Identities = 101/288 (35%), Positives = 159/288 (55%), Gaps = 2/288 (0%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
+ +C VR AD GW+DIA T A + +LE LGY+ I+ L+VP+ + L++ +D F
Sbjct: 22 AEDAACAHVRLADPGWSDIAVTNASAAFLLES-LGYRVKIETLSVPIIYGGLRDGQVDAF 80
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
+G W P+ + + ++ G ++ + NL G ++ LAV + GI ++D+A+ +
Sbjct: 81 LGGWMPAHQDYHERFVASGQVERLGRNLDGTRFTLAVPRYVWDAGIHRFEDLARQAQRFD 140
Query: 140 AKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWE 199
K+YGI G NQ I MI+ N+F L ++L+ +SE A +++ R ++ VFL W
Sbjct: 141 RKLYGIGSGAPANQSIQKMIDANRFGLGDWKLVASSEQAMLAELARAEKRQRWLVFLGWT 200
Query: 200 PHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMM 259
PHP+N + YL GGE+ G VYT+ R Y +CPN +RLL N++F++ +EN+MM
Sbjct: 201 PHPMNLRHELRYLDGGEQYFGE-RGQVYTLARKGYAAQCPNPARLLANLRFALDMENQMM 259
Query: 260 KLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
L R L+ HP +L WL GVT DG D + +
Sbjct: 260 SDALQGSATPATAARAWLKAHPQVLDAWLRGVTARDGGDALAAVRDRL 307
>gi|330957376|gb|EGH57636.1| glycine/betaine family, ABC transporter substrate-binding protein
[Pseudomonas syringae pv. maculicola str. ES4326]
Length = 308
Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats.
Identities = 105/309 (33%), Positives = 171/309 (55%), Gaps = 3/309 (0%)
Query: 1 MYKILAVCLFLTTFSISYARDA--DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K+ V S+A A SC+ V+ AD GW+DIAAT A+T V+LE LGYK
Sbjct: 1 MKKLSTVVAVAVMTFGSHAAQAEDASCSTVKMADPGWSDIAATNAITGVVLE-GLGYKPK 59
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ LAVP+ + LK+ +D+F+G W P+ + F ++ G + +A+NL+G ++ LAV D
Sbjct: 60 VDTLAVPIAYGGLKDGKLDVFLGNWMPAQQGFYDKFVATGDVTQLAKNLEGTEFTLAVPD 119
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ G+ + D++K+ + KIYGI G N + ++I N+F L ++L+E+SE A
Sbjct: 120 YVWDAGVHDFADLSKFADKFDKKIYGIGSGAPANLSLQEIIKKNEFDLGQWKLVESSEQA 179
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+++ R+ + VFL W PHP+N + + G E SV+T+ R Y C
Sbjct: 180 MLAEVNRNVKKKAFVVFLGWTPHPMNVQIKGMHYLKGGEKYFGDTGSVFTLTRKGYAQAC 239
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN+ +LL N+ F++ +EN +M + N K + ++ +P +L WL GV T DG+D
Sbjct: 240 PNVGKLLTNLSFTLDMENSIMAEVTNKKVSNSAAAKAWIKANPAVLDTWLEGVKTVDGKD 299
Query: 299 PSRQLERFM 307
++ +
Sbjct: 300 GLAAVKAKL 308
>gi|163795908|ref|ZP_02189872.1| ABC-type proline/glycine betaine transport system, periplasmic
component [alpha proteobacterium BAL199]
gi|159178941|gb|EDP63477.1| ABC-type proline/glycine betaine transport system, periplasmic
component [alpha proteobacterium BAL199]
Length = 318
Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats.
Identities = 129/306 (42%), Positives = 194/306 (63%), Gaps = 3/306 (0%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
+ A+ + T + + A D SC V F+D GWTDI ATTA SV+L + LGY+ ++L+
Sbjct: 12 VAAMAAVVLTTAPALAADPASCQKVTFSDVGWTDITATTAAASVVL-DALGYEPKTQILS 70
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
VPVT+ SLKNK +D+F+G W PS+ + PY ++GS+ + NL+GAKY LAV
Sbjct: 71 VPVTYASLKNKDVDVFLGNWMPSMAADLKPYTDDGSVVSLTANLEGAKYTLAVPTYVAEA 130
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
G+KS+ D+A K + K+YGIEPGN+GN+ I DMI+ + F LKG+ ++E+SE SQ+
Sbjct: 131 GVKSFADLAANKAKFDGKLYGIEPGNDGNRLIQDMIDKDAFGLKGWEVVESSEQGMLSQV 190
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNI 241
R R VFL W PHP+N++ ++ YL GG++ +G A+VYT VR+ +CPN+
Sbjct: 191 ARAARGKEWIVFLGWAPHPMNANFDLTYLAGGDDFFGPDYGGATVYTNVRTGLTKECPNL 250
Query: 242 SRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSR 301
+L+ N+KF++A+EN +M IL++ + L+ +PDL +WL GVTTF G D +
Sbjct: 251 GKLVTNLKFTLAMENAVMGSILDDGMQPEKAAAKYLKANPDLAMSWLDGVTTFKGDDAKK 310
Query: 302 QLERFM 307
+ +
Sbjct: 311 AVAAKL 316
>gi|86358686|ref|YP_470578.1| proline/glycine betaine ABC transporter, substrate-binding protein
[Rhizobium etli CFN 42]
gi|86282788|gb|ABC91851.1| proline/glycine betaine ABC transporter, substrate-binding protein
[Rhizobium etli CFN 42]
Length = 318
Score = 231 bits (588), Expect = 1e-58, Method: Composition-based stats.
Identities = 136/311 (43%), Positives = 206/311 (66%), Gaps = 6/311 (1%)
Query: 2 YKILAVCLF--LTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K++ L+ + ++A D DSC+ V F+D GWTDI ATTA SV+L+ +GY+T++
Sbjct: 7 FKLVTATAVAALSVATAAFAADPDSCSTVHFSDVGWTDITATTATASVVLKS-IGYQTDV 65
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
K+L+VPVT+ SLKNK IDIF+G W P+ EK + PY+++ S++ NL GAKY LA N
Sbjct: 66 KVLSVPVTYTSLKNKDIDIFLGNWMPTQEKDVRPYIDDKSVESFGPNLVGAKYTLATNAK 125
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
G LGIK ++DIA +K +L KIYGIEPGN+GN+ ++D+I N F +K ++E+SE
Sbjct: 126 GAELGIKDFKDIAAHKDDLDGKIYGIEPGNDGNRLVMDLIEKNTFGMKDMEVVESSEQGM 185
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDK 237
+Q+ R ++ P VFL WEPHP+N++ + YL GG+++ FG A VYT VR+ YL +
Sbjct: 186 LAQVARAEKAGKPVVFLGWEPHPMNTNFKLTYLTGGDDVFGPDFGGAKVYTNVRAGYLGE 245
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQ 297
CPN+ +LKN+ FS+ +EN++M IL++ ++ + L+ +P L+ WL GV T DG+
Sbjct: 246 CPNVGAMLKNLTFSLDMENQIMGKILDDGKEPEAAATEWLKANPSALEPWLAGVKTRDGK 305
Query: 298 -DPSRQLERFM 307
D + +
Sbjct: 306 GDALAAAKTSL 316
>gi|302186436|ref|ZP_07263109.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. syringae 642]
Length = 308
Score = 231 bits (588), Expect = 1e-58, Method: Composition-based stats.
Identities = 102/309 (33%), Positives = 170/309 (55%), Gaps = 3/309 (0%)
Query: 1 MYKI--LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K+ + S++ + SC+ V+ AD GW+DIAAT AMTSV+LE LGYK
Sbjct: 1 MKKLSTTVAVAVMALGSLTAQAEDASCSTVKMADPGWSDIAATNAMTSVVLE-GLGYKPK 59
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ LAVP+ + LK+ +D+F+G W P+ + F ++ G + + +NL+G ++ LAV D
Sbjct: 60 VDTLAVPIAYGGLKDGKLDVFLGNWMPAQQGFYDKFVATGDVTQLTKNLEGTEFTLAVPD 119
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ G+ + D+ K+ + KIYGI G N + ++I N+F L ++L+E+SE +
Sbjct: 120 YVWDAGVHDFADLNKFADKFDKKIYGIGSGAPANLSLQEIIKKNEFDLSKWKLVESSETS 179
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+++ R+ + VFL W PHP+N + + G E SV+T+ R Y C
Sbjct: 180 MLAEVNRNVKKKAFVVFLGWTPHPMNVQIKGMHYLKGGEKYFGDTGSVFTLTRKGYAQAC 239
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN+ +LL N+ F++ +EN +M ++N K ++ +P +L WL GV T DG+D
Sbjct: 240 PNVGKLLTNLSFTLDMENSIMAEVVNKKVSNSKAATAWIKANPAVLDKWLEGVQTVDGKD 299
Query: 299 PSRQLERFM 307
++ +
Sbjct: 300 GLAAVKASL 308
>gi|209550402|ref|YP_002282319.1| choline ABC transporter periplasmic binding protein [Rhizobium
leguminosarum bv. trifolii WSM2304]
gi|209536158|gb|ACI56093.1| choline ABC transporter, periplasmic binding protein [Rhizobium
leguminosarum bv. trifolii WSM2304]
Length = 318
Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats.
Identities = 139/311 (44%), Positives = 208/311 (66%), Gaps = 6/311 (1%)
Query: 2 YKILAVCLF--LTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K++ L+ + ++A D DSC+ V F+D GWTDI ATTA SV+L+ +GY+T++
Sbjct: 7 FKLVTATAVAALSVATAAFAADPDSCSTVHFSDVGWTDITATTATASVVLKS-IGYQTDV 65
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
K+L+VPVT+ SLKNK IDIF+G W P+ EK + PYL++ S++ NL GAKY LA N
Sbjct: 66 KVLSVPVTYTSLKNKDIDIFLGNWMPTQEKDVRPYLDDKSVESFGPNLVGAKYTLATNAK 125
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
G LGIK ++DIA +K +L KIYGIEPGN+GN+ ++D+I N F +K ++E+SE
Sbjct: 126 GAELGIKDFKDIAAHKDDLDGKIYGIEPGNDGNRLVMDLIEKNTFGMKEMEVVESSEQGM 185
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDK 237
+Q+ R ++ P VFL WEPHP+N++ + YL GG+++ FG A VYT VR+ YLD+
Sbjct: 186 LAQVARAEKAGKPVVFLGWEPHPMNTNFKLTYLTGGDDVFGPDFGGAKVYTNVRAGYLDE 245
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQ 297
CPN+ +LKN+KFS+ +EN++M IL++ ++ + L+ +P L+ WL GV T DG+
Sbjct: 246 CPNVGAMLKNLKFSLDMENKIMGKILDDGKEPEAAASEWLKANPSALEPWLAGVKTRDGK 305
Query: 298 -DPSRQLERFM 307
D + +
Sbjct: 306 GDALAAAKTGL 316
>gi|312958129|ref|ZP_07772652.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas fluorescens WH6]
gi|311287560|gb|EFQ66118.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas fluorescens WH6]
Length = 304
Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats.
Identities = 114/307 (37%), Positives = 171/307 (55%), Gaps = 3/307 (0%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K+ V L S + DA SC V+ AD GW+DIAAT A+T +L +GYK +
Sbjct: 1 MQKLTVVLGILALSSANVYADA-SCETVKMADPGWSDIAATNAITGFLL-TGMGYKAKVD 58
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
LAVP+TF LK+ +D+F+G W P+ + F ++ G + +A+NL G ++ LAV D
Sbjct: 59 TLAVPITFGGLKDGQVDVFLGNWMPAQQGFYDKFVANGEVVQLAKNLDGTEFTLAVPDYV 118
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ G+ + D+ K+ + KIYGI G N + ++I N F L ++LIE+SE A
Sbjct: 119 WDAGVHDFADLNKFADKFDKKIYGIGSGAPANISLQEIIKKNDFDLGQWKLIESSEQAML 178
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+++ R + FL W PHP+N L +HYL GGE+ G + VYT+ R Y CPN
Sbjct: 179 AEVSRAVKKQRFVTFLGWTPHPMNVQLKMHYLKGGEKYFGDTGS-VYTLTRKGYAQACPN 237
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPS 300
+ +LL N+ F+ +EN +M + NNK + +R +P +L WL GV T DGQD
Sbjct: 238 VGKLLTNLSFTQEMENSIMAEVANNKVSNAEAAKAWIRANPAVLDKWLEGVKTVDGQDAL 297
Query: 301 RQLERFM 307
++ +
Sbjct: 298 AAVKAKL 304
>gi|115359310|ref|YP_776448.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia ambifaria AMMD]
gi|171316853|ref|ZP_02906063.1| choline ABC transporter, periplasmic binding protein [Burkholderia
ambifaria MEX-5]
gi|172064100|ref|YP_001811751.1| choline ABC transporter, periplasmic binding protein [Burkholderia
ambifaria MC40-6]
gi|115284598|gb|ABI90114.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia ambifaria AMMD]
gi|171098023|gb|EDT42840.1| choline ABC transporter, periplasmic binding protein [Burkholderia
ambifaria MEX-5]
gi|171996617|gb|ACB67535.1| choline ABC transporter, periplasmic binding protein [Burkholderia
ambifaria MC40-6]
Length = 315
Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats.
Identities = 129/314 (41%), Positives = 191/314 (60%), Gaps = 9/314 (2%)
Query: 1 MYKILAVCLFLTTFSISY----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
M ++L + + A D C VRFAD GW+DIAATT + S +L + LGY
Sbjct: 1 MKRLLIATVCGIGIAAPMSAVYAADPPVCKNVRFADVGWSDIAATTGLASTML-QGLGYA 59
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLA 115
+ +VP+TF +K+K ID+F+GYW P+++ I P+ + G+IK++A NL GAKY LA
Sbjct: 60 PTKTIASVPITFAGIKSKQIDVFLGYWSPTMDPIIQPFTKAGTIKVLATPNLTGAKYTLA 119
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
V D + G+KS+ DI KY +L KIYGIEPGN+GN I MI+ N+F L F+L+E+S
Sbjct: 120 VPDYVYQGGLKSFADIQKYADKLNGKIYGIEPGNDGNALIKKMIDTNQFGLGKFKLVESS 179
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSD 233
E ++ R R+ VFL WEPHP+N + I YL GG+++ +GEA V T D
Sbjct: 180 EAGMLIEVNRAARDKQWIVFLGWEPHPMNVQMKIDYLTGGDDVFGPNYGEAKVLTATPPD 239
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
Y +CPN+++ + N++F+ A+EN +M I+ NK+D L+ +P L+ WL GVTT
Sbjct: 240 YAQRCPNVAKFVSNLQFTTAIENHVMVPIM-NKEDPNKAAAAWLKANPQSLEKWLAGVTT 298
Query: 294 FDGQDPSRQLERFM 307
DG+ ++ ++
Sbjct: 299 LDGKPGLPAVKAYL 312
>gi|126455704|ref|YP_001074796.1| quaternary amine ABC transporter periplasmic substrate-binding
protein [Burkholderia pseudomallei 1106a]
gi|217425514|ref|ZP_03457007.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 576]
gi|237509058|ref|ZP_04521773.1| ABC transporter, quaternary amine uptake transporter [Burkholderia
pseudomallei MSHR346]
gi|242313004|ref|ZP_04812021.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 1106b]
gi|254182323|ref|ZP_04888918.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 1655]
gi|254187385|ref|ZP_04893898.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
pseudomallei Pasteur 52237]
gi|254299825|ref|ZP_04967273.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 406e]
gi|126229472|gb|ABN92885.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 1106a]
gi|157809773|gb|EDO86943.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 406e]
gi|157935066|gb|EDO90736.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
pseudomallei Pasteur 52237]
gi|184212859|gb|EDU09902.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 1655]
gi|217391477|gb|EEC31506.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 576]
gi|235001263|gb|EEP50687.1| ABC transporter, quaternary amine uptake transporter [Burkholderia
pseudomallei MSHR346]
gi|242136243|gb|EES22646.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 1106b]
Length = 336
Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats.
Identities = 121/296 (40%), Positives = 188/296 (63%), Gaps = 5/296 (1%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNK 74
S S+A+D+ +C VRFAD GWTDI +TTA+ S++ + LGYK + +VP++F LKN+
Sbjct: 41 SQSFAQDSAACRNVRFADIGWTDITSTTALASLLF-DGLGYKPTTTIASVPISFAGLKNR 99
Query: 75 GIDIFMGYWYPSLEKFIAPYLEEGSIKLV-AENLQGAKYMLAVNDVGFALGIKSYQDIAK 133
+D+ +GYW+P + + P+L+ SI +V NL GAK LAV + G+KS+ DIAK
Sbjct: 100 QLDVSLGYWWPVQQHQLQPFLDSKSISVVEPPNLSGAKATLAVPSYVYQAGLKSFDDIAK 159
Query: 134 YKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPA 193
++ EL KIYGIEPG+ N I MI+ N++ L GF+L+E+SE + R R+
Sbjct: 160 HRAELDGKIYGIEPGSSANATIQKMIDTNQYGLGGFKLVESSEAGMLVTVERAIRDKKWV 219
Query: 194 VFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFS 251
VFL WEPHP+N + ++YL GG+ +GEA VYT+ DY+ +CPN +L+ N++F+
Sbjct: 220 VFLGWEPHPMNIQIGMNYLSGGDAAFGPNYGEARVYTLTSPDYMARCPNAGKLVGNLRFT 279
Query: 252 VALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+EN++M+ ++ NK + +R +P +L WL GV T+DG+D ++ ++
Sbjct: 280 TQMENQLMQAVM-NKVKPAEAAKAYIRKNPQVLDAWLAGVKTYDGKDGLAAVKAYL 334
>gi|307947484|ref|ZP_07662817.1| chain B, Abc-Transporter Choline Binding Protein In Complex With
Acetylcholine [Roseibium sp. TrichSKD4]
gi|307769302|gb|EFO28530.1| chain B, Abc-Transporter Choline Binding Protein In Complex With
Acetylcholine [Roseibium sp. TrichSKD4]
Length = 314
Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats.
Identities = 143/310 (46%), Positives = 203/310 (65%), Gaps = 4/310 (1%)
Query: 1 MYKILAVCLF-LTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+ KI + + A + +SC VRF+D GWTDI ATTA TS +LE LGY T +
Sbjct: 4 ITKIFGTLAIGAALTTAASAAEPESCKTVRFSDVGWTDITATTAATSTVLEA-LGYTTEV 62
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
K+L+VPVT+ SLKNK ID+F+G W P++E IA Y E+GS++ V NLQGAKY LAV
Sbjct: 63 KILSVPVTYASLKNKDIDVFLGNWMPTMEGDIAAYREDGSVETVRANLQGAKYTLAVPKY 122
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+ G+KS+ DIAK+K +L KIYGIEPGN+GN+ I+DMI N F L GF ++E+SE
Sbjct: 123 TYDKGLKSFADIAKFKDDLDGKIYGIEPGNDGNRLIIDMIEANTFGLDGFEVVESSEQGM 182
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDK 237
+Q+ R ++ VFL WEPHP+N++ + YL GG++I +G A+VYT VR+ Y +
Sbjct: 183 LAQVARSEKREKDIVFLGWEPHPMNANFEMAYLDGGDDIFGPNYGGATVYTNVRAGYTSE 242
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQ 297
C N+ +LL+N++FS+A+ENE+M ILN+ ++ L+ +P + WL GVTT DG
Sbjct: 243 CANVGKLLENLEFSLAMENEIMGAILNDGEEPNKAASAWLKNNPAAFEAWLTGVTTVDGG 302
Query: 298 DPSRQLERFM 307
D ++ +
Sbjct: 303 DAVAAVKGKL 312
>gi|299886637|emb|CBI83289.1| substrate binding region of ABC-type glycine betaine transport
system [Pseudomonas sp. ATCC19151]
Length = 308
Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats.
Identities = 102/310 (32%), Positives = 170/310 (54%), Gaps = 5/310 (1%)
Query: 1 MYKIL---AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M ++ A L TT +++ + C V+ D GW+DIA T + ++L + LGY+
Sbjct: 1 MKTLIPAVAAGLLSTTLALAAQAEDARCATVKLGDPGWSDIAVTNGVARLLL-DGLGYRA 59
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+ LAVP+ F L+ +D F+G W P+ + ++ G ++ +AENL G +Y LAV
Sbjct: 60 ETQTLAVPIIFAGLQKGQVDAFLGNWMPAQQSNYDRFVASGEVERLAENLTGTEYTLAVP 119
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
+ G+K++ D+ + + +YGI G+ N I +MI +N+F L ++L+E+SE
Sbjct: 120 RYVYEAGVKTFADLDSHAERFKHTLYGIAAGSPANVSIQEMIRSNEFGLGDWKLVESSEQ 179
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDK 237
A Q+ R + N VFL W PHP+N ++ YL GGE G + V T+ R Y +
Sbjct: 180 AMLVQVGRAVKRNEFVVFLGWTPHPMNVQYDLVYLKGGERYFGESGS-VNTLARKGYAQQ 238
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQ 297
CPN+ RLL N++F+ +EN +M +L+ K + + ++ +P L+ WL GVTT +G
Sbjct: 239 CPNVGRLLANLQFTQGMENSVMDQVLSGKASNEAAVKAWIKANPAALEAWLNGVTTREGG 298
Query: 298 DPSRQLERFM 307
D ++ +
Sbjct: 299 DGLAAVKAKL 308
>gi|71737365|ref|YP_272343.1| glycine betaine family ABC transporter substrate-binding protein
[Pseudomonas syringae pv. phaseolicola 1448A]
gi|71557918|gb|AAZ37129.1| glycine/betaine family, ABC transporter, substrate-binding protein
[Pseudomonas syringae pv. phaseolicola 1448A]
gi|320326690|gb|EFW82735.1| glycine betaine family ABC transporter, substrate-binding protein
[Pseudomonas syringae pv. glycinea str. B076]
gi|320331336|gb|EFW87279.1| glycine betaine family ABC transporter, substrate-binding protein
[Pseudomonas syringae pv. glycinea str. race 4]
gi|330881842|gb|EGH15991.1| glycine betaine family ABC transporter substrate-binding protein
[Pseudomonas syringae pv. glycinea str. race 4]
Length = 308
Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats.
Identities = 104/309 (33%), Positives = 167/309 (54%), Gaps = 3/309 (0%)
Query: 1 MYKILAVCLFLTTFSISYARDA--DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K+ S A A SC+ V+ AD GW+DI AT A+ SV+LE LGYK
Sbjct: 1 MKKLSTAVAVAVMTFGSLAAQAEDASCSTVKMADPGWSDIGATNAIASVVLE-GLGYKAK 59
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ LAVP+ + LK+ +D+F+G W P+ + F ++ G + +A NL+G ++ LAV D
Sbjct: 60 VDTLAVPIAYGGLKDGKLDVFLGNWMPAQQGFYDKFVATGDVTQLARNLEGTEFTLAVPD 119
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ G+ + D+ K+ + KIYGI G N + ++I N+F L ++L+E+SE A
Sbjct: 120 YVWDAGVHDFADLNKFADKFDQKIYGIGSGAPANLSLQEIIKKNEFDLGKWKLVESSETA 179
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+++ R+ + VFL W PHP+N + + G E SV+T+ R Y C
Sbjct: 180 MLAEVNRNVKKKAFVVFLGWTPHPMNVQIKGMHYLKGGEKYFGDTGSVFTLTRKGYAQAC 239
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN+ +LL N+ F++ +EN +M + N K + ++ +P +L WL GV TFDG+D
Sbjct: 240 PNVGKLLTNLSFTLDMENSIMAEVANKKVSNSAAAKAWIKANPAVLDTWLEGVKTFDGKD 299
Query: 299 PSRQLERFM 307
++ +
Sbjct: 300 GLTAVKARL 308
>gi|296386505|ref|ZP_06876004.1| hypothetical protein PaerPAb_00165 [Pseudomonas aeruginosa PAb1]
Length = 307
Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats.
Identities = 105/306 (34%), Positives = 167/306 (54%), Gaps = 4/306 (1%)
Query: 1 MYKILAVCLFLTTFSISYA--RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M ++ L T F S + + +C VR AD GW+DIA T A + +LE LGY+
Sbjct: 1 MNRLPTCLLAATLFLGSASLYAEDPACARVRLADPGWSDIAVTNATAAFLLES-LGYQVK 59
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
I L+VP+ + L++ +D F+G W P+ + + ++ G ++ +A NL G ++ LAV
Sbjct: 60 IDTLSVPIIYGGLRDGQVDAFLGGWMPAHQDYHDKFIASGQVERLARNLDGTRFTLAVPR 119
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ G+ ++D+A + K+YGI G NQ I MI+ N+F L ++L+E+SE A
Sbjct: 120 YVWDAGVHRFEDLAAQGQRFNRKLYGIGSGAPANQSIQKMIDANQFGLGDWKLVESSEQA 179
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+++ R ++ VFL W PHP+N ++ YL GGE+ G VYT+ R Y +C
Sbjct: 180 MLAELGRAEKRQRWLVFLGWTPHPMNIRHDLRYLEGGEQYFGD-RGQVYTLARKGYAAQC 238
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN +RLL N++F + +EN +M L R L+ +P +L+ WL GVT+ DG D
Sbjct: 239 PNPARLLANLRFDLDMENRLMSDALEGTATPASATRAWLKANPRVLEAWLQGVTSRDGGD 298
Query: 299 PSRQLE 304
+
Sbjct: 299 ALAAVR 304
>gi|116053750|ref|YP_788185.1| hypothetical protein PA14_00360 [Pseudomonas aeruginosa UCBPP-PA14]
gi|313111447|ref|ZP_07797249.1| putative glycine betaine/L-proline ABC transporter, periplasmic
substrate-binding protein [Pseudomonas aeruginosa 39016]
gi|115588971|gb|ABJ14986.1| putative glycine betaine/L-proline ABC transporter, periplasmic
substrate-binding protein [Pseudomonas aeruginosa
UCBPP-PA14]
gi|310883751|gb|EFQ42345.1| putative glycine betaine/L-proline ABC transporter, periplasmic
substrate-binding protein [Pseudomonas aeruginosa 39016]
Length = 307
Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats.
Identities = 105/306 (34%), Positives = 167/306 (54%), Gaps = 4/306 (1%)
Query: 1 MYKILAVCLFLTTFSISYA--RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M ++ L T F S + + +C VR AD GW+DIA T A + +LE LGY+
Sbjct: 1 MNRLPTCLLAATLFLGSASLYAEDPACARVRLADPGWSDIAVTNATAAFLLES-LGYQVK 59
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
I L+VP+ + L++ +D F+G W P+ + + ++ G ++ +A NL G ++ LAV
Sbjct: 60 IDTLSVPIIYGGLRDGQVDAFLGGWMPAHQDYHDKFVASGQVERLARNLDGTRFTLAVPR 119
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ G+ ++D+A + K+YGI G NQ I MI+ N+F L ++L+E+SE A
Sbjct: 120 YVWDAGVHRFEDLAAQGQRFNRKLYGIGSGAPANQSIQKMIDANQFGLGDWKLVESSEQA 179
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+++ R ++ VFL W PHP+N ++ YL GGE+ G VYT+ R Y +C
Sbjct: 180 MLAELGRAEKRQRWLVFLGWTPHPMNIRHDLRYLEGGEQYFGD-RGQVYTLARKGYAAQC 238
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN +RLL N++F + +EN +M L R L+ +P +L+ WL GVT+ DG D
Sbjct: 239 PNPARLLANLRFDLDMENRLMSDALEGTATPASATRAWLKANPRVLEAWLQGVTSRDGGD 298
Query: 299 PSRQLE 304
+
Sbjct: 299 ALAAVR 304
>gi|331017675|gb|EGH97731.1| glycine/betaine family, ABC transporter, substrate-binding protein
[Pseudomonas syringae pv. lachrymans str. M302278PT]
Length = 308
Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats.
Identities = 103/309 (33%), Positives = 170/309 (55%), Gaps = 3/309 (0%)
Query: 1 MYKILAVCLFLTTFSISYARDA--DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M ++ S+A A SC+ V+ AD GW+DIAAT A+T V+LE LGYK
Sbjct: 1 MKQLSTAVAVAVMTFGSFAAQAEDASCSTVKMADPGWSDIAATNAITGVVLE-GLGYKAK 59
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ LAVP+ + LK+ +D+F+G W P+ + F ++ G + +A NL+G ++ LAV D
Sbjct: 60 VDTLAVPIAYGGLKDGKLDVFLGNWMPAQQGFYDKFVATGDVTQLARNLEGTEFTLAVPD 119
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ G+ + D++K+ ++ KIYGI G N + ++I N+F L ++L+E+SE A
Sbjct: 120 YVWEAGVHDFTDLSKFAEKFDKKIYGIGSGAPANLSLQEIIKKNEFDLGQWKLVESSEQA 179
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+++ R+ + VFL W PHP+N + + G E SV+T+ R Y C
Sbjct: 180 MLAEVNRNVKKKAFVVFLGWTPHPMNVQIKGMHYLKGGEKYFGDTGSVFTLTRKGYAQAC 239
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN+ +LL N+ F++ +EN +M + N K + ++ +P +L WL GV T DG+D
Sbjct: 240 PNVGKLLTNLSFTLDMENSIMAEVTNKKLSNSAAAKAWIKANPAVLDTWLEGVKTVDGKD 299
Query: 299 PSRQLERFM 307
++ +
Sbjct: 300 GLAAVKAKL 308
>gi|167841962|ref|ZP_02468646.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
thailandensis MSMB43]
Length = 316
Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats.
Identities = 123/296 (41%), Positives = 188/296 (63%), Gaps = 5/296 (1%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNK 74
S S+A+D+ +C VRFAD GWTDI +TTA+ S++ + LGYK + +VP++F LKN+
Sbjct: 21 SPSFAQDSAACRNVRFADIGWTDITSTTALASLLF-DGLGYKPTTTISSVPISFAGLKNR 79
Query: 75 GIDIFMGYWYPSLEKFIAPYLEEGSIKLV-AENLQGAKYMLAVNDVGFALGIKSYQDIAK 133
+D+ +GYW+P + + P+L+ SI +V NL GAK LAV + G+KS+ DIAK
Sbjct: 80 QLDVSLGYWWPVQQHQLQPFLDSKSISVVEPPNLSGAKATLAVPGYVYQAGLKSFDDIAK 139
Query: 134 YKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPA 193
++ EL KIYGIEPG+ N I MI+ N++ L GF+L+E+SE + R R+
Sbjct: 140 HRAELDGKIYGIEPGSSANATIQKMIDANQYGLGGFKLVESSEAGMLVTVDRAIRDKKWV 199
Query: 194 VFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFS 251
VFL WEPHP+N +++ YL GG+ +GEA VYT+ DY+ +CPN RL+ N++F+
Sbjct: 200 VFLGWEPHPMNIQISMSYLSGGDAAFGPNYGEARVYTLTSPDYMARCPNAGRLVGNLRFT 259
Query: 252 VALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+EN++M+ ++ NK + LR +P +L WL GV T+DG+D ++ ++
Sbjct: 260 TQMENQLMQAVM-NKVKPAEAAKAYLRKNPQVLDAWLAGVKTYDGKDGLAAVKAYL 314
>gi|213968416|ref|ZP_03396559.1| glycine/betaine family, ABC transporter, substrate-binding protein
[Pseudomonas syringae pv. tomato T1]
gi|301384296|ref|ZP_07232714.1| glycine/betaine family, ABC transporter, substrate-binding protein
[Pseudomonas syringae pv. tomato Max13]
gi|302060142|ref|ZP_07251683.1| glycine/betaine family, ABC transporter, substrate-binding protein
[Pseudomonas syringae pv. tomato K40]
gi|302130415|ref|ZP_07256405.1| glycine/betaine family, ABC transporter, substrate-binding protein
[Pseudomonas syringae pv. tomato NCPPB 1108]
gi|213926704|gb|EEB60256.1| glycine/betaine family, ABC transporter, substrate-binding protein
[Pseudomonas syringae pv. tomato T1]
Length = 308
Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats.
Identities = 103/309 (33%), Positives = 170/309 (55%), Gaps = 3/309 (0%)
Query: 1 MYKILAVCLFLTTFSISYARDA--DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M ++ S+A A SC+ V+ AD GW+DIAAT A+T V+LE LGYK
Sbjct: 1 MKQLSTAVAVAVMTFGSFAAQAEDASCSTVKMADPGWSDIAATNAITGVVLE-GLGYKAK 59
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ LAVP+ + LK+ +D+F+G W P+ + F ++ G + +A NL+G ++ LAV D
Sbjct: 60 VDTLAVPIAYGGLKDGKLDVFLGNWMPAQQGFYDKFVATGDVTQLARNLEGTEFTLAVPD 119
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ G+ + D++K+ ++ KIYGI G N + ++I N+F L ++L+E+SE A
Sbjct: 120 YVWEAGVHDFTDLSKFAEKFDKKIYGIGSGAPANLSLQEIIKKNEFDLGQWKLVESSEQA 179
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+++ R+ + VFL W PHP+N + + G E SV+T+ R Y C
Sbjct: 180 MLAEVNRNVKKKAFVVFLGWTPHPMNVQIKGMHYLKGGEKYFGDTGSVFTLTRKGYAQAC 239
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN+ +LL N+ F++ +EN +M + N K + ++ +P +L WL GV T DG+D
Sbjct: 240 PNVGKLLTNLSFTLDMENRIMAEVTNKKLSNSAAAKAWIKANPAVLDTWLEGVKTVDGKD 299
Query: 299 PSRQLERFM 307
++ +
Sbjct: 300 GLAAVKAKL 308
>gi|330876388|gb|EGH10537.1| glycine/betaine family, ABC transporter substrate-binding protein
[Pseudomonas syringae pv. morsprunorum str. M302280PT]
Length = 308
Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats.
Identities = 102/309 (33%), Positives = 169/309 (54%), Gaps = 3/309 (0%)
Query: 1 MYKILAVCLFLTTFSISYARDA--DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K+ S+A A SC+ V+ AD GW+DI AT A+T V+LE LGYK
Sbjct: 1 MKKLSTTVAVAVMTFGSFAAQAEDASCSTVKMADPGWSDIGATNAITGVVLE-GLGYKAK 59
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ LAVP+ + LK+ +D+F+G W P+ + F ++ G + +A NL+G ++ LAV D
Sbjct: 60 VDTLAVPIAYGGLKDGKLDVFLGNWMPAQQGFYDKFVATGDVTQLARNLEGTEFTLAVPD 119
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ G+ + D++K+ ++ KIYGI G N + +++ N+F L ++L+E+SE A
Sbjct: 120 YVWEAGVHDFADLSKFAEKFDKKIYGIGSGAPANLSLQEIVKKNEFDLGQWKLVESSEQA 179
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+++ R+ + VFL W PHP+N + + G E SV+T+ R Y C
Sbjct: 180 MLAEVNRNVKKKEFVVFLGWTPHPMNVQIKGMHYLKGGEKYFGDTGSVFTLTRKGYSQAC 239
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN+ +LL N+ F++ +EN +M + N K + ++ +P +L WL GV T DG+D
Sbjct: 240 PNVGKLLTNLSFTLDMENSIMAEVTNKKVSNSAAAKAWIKANPAVLDKWLEGVKTIDGKD 299
Query: 299 PSRQLERFM 307
++ +
Sbjct: 300 GLAVVKAGL 308
>gi|237801638|ref|ZP_04590099.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331024497|gb|EGI04553.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 308
Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats.
Identities = 103/309 (33%), Positives = 168/309 (54%), Gaps = 3/309 (0%)
Query: 1 MYKILAVCLFLTTFSISYARDA--DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K+ S A A SC+ V+ AD GW+DIA T A+TS +LE LGYK
Sbjct: 1 MMKLTTAAAVTVMTLTSLAAQAEDASCSTVKMADPGWSDIATTNAITSTVLE-GLGYKPK 59
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ LAVP+ + LK+ +D+F+G W P+ + F ++ G + +A NL+G ++ LAV D
Sbjct: 60 VDTLAVPIAYGGLKDGKLDVFLGNWMPAQQGFYDKFVATGDVTQLARNLEGTEFTLAVPD 119
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ G+ + D++K+ + KIYGI G N + ++I N+F L ++L+E+SE A
Sbjct: 120 YVWDAGVHDFADLSKFADKFDKKIYGIGSGAPANLSLQEIIKKNEFDLGKWKLVESSEQA 179
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+++ R+ + VFL W PHP+N + + G E SV+T+ R Y + C
Sbjct: 180 MLAEVNRNVKKKAFVVFLGWTPHPMNVQIKGMHYLKGGEKYFGDTGSVFTLTRKGYAEAC 239
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN+ +LL N+ F++ +EN +M + N K + ++ +P +L WL GV T DG+D
Sbjct: 240 PNVGKLLTNLSFTLDMENSIMAEVTNKKVSNSEAAKAWIKANPAVLDKWLDGVKTVDGKD 299
Query: 299 PSRQLERFM 307
++ +
Sbjct: 300 GLAAVKAKL 308
>gi|330937241|gb|EGH41257.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. pisi str. 1704B]
Length = 308
Score = 230 bits (585), Expect = 2e-58, Method: Composition-based stats.
Identities = 105/309 (33%), Positives = 170/309 (55%), Gaps = 3/309 (0%)
Query: 1 MYKILAVCLFLTTFSISYARDA--DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K+ S A A SC+ V+ AD GW+DIAAT A+TSV+LE LGY
Sbjct: 1 MKKLSTAVAVAVMTLGSLAAQAEDASCSTVKMADPGWSDIAATNAITSVVLE-GLGYTPK 59
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ LAVP+ + LK+ +D+F+G W P+ + F ++ G + +A+NL+G ++ LAV D
Sbjct: 60 VDTLAVPIAYGGLKDGKLDVFLGNWMPAQQGFYDKFVATGDVTQLAKNLEGTEFTLAVPD 119
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ G+ ++ D+ K+ + KIYGI G N + ++I N+F L ++L+E+SE A
Sbjct: 120 YVWDAGVHNFADLNKFADKFDKKIYGIGSGAPANLSLQEIIKKNEFDLGKWKLVESSETA 179
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+++ R+ + VFL W PHP+N + + G E SV+T+ R Y C
Sbjct: 180 MLAEVNRNVKKKAFVVFLGWTPHPMNVQIKGMHYLKGGEKYFGDTGSVFTLTRKGYAKAC 239
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN+ +LL N+ F++ +EN +M ++N K + ++ +P +L WL GV T DG+D
Sbjct: 240 PNVGKLLTNLSFTLDMENSIMAEVVNKKVSNSEAAKAWIKANPAVLDKWLEGVQTADGKD 299
Query: 299 PSRQLERFM 307
++ M
Sbjct: 300 GLAAVKAKM 308
>gi|229587604|ref|YP_002869723.1| putative ABC transporter substrate-binding protein [Pseudomonas
fluorescens SBW25]
gi|229359470|emb|CAY46311.1| putative ABC transport system, substrate-binding protein
[Pseudomonas fluorescens SBW25]
Length = 304
Score = 230 bits (585), Expect = 3e-58, Method: Composition-based stats.
Identities = 112/307 (36%), Positives = 171/307 (55%), Gaps = 3/307 (0%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K+ V L S + DA SC V+ AD GW+DIAAT A+T +L +GYK +
Sbjct: 1 MQKLTVVLGMLVLSSANVYADA-SCETVKMADPGWSDIAATNAITGFLL-TGMGYKAKVD 58
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
LAVP+TF LK+ +D+F+G W P+ + F ++ G + +A+NL G ++ LAV D
Sbjct: 59 TLAVPITFGGLKDGQVDVFLGNWMPAQQGFYDKFVANGDVVQLAKNLDGTEFTLAVPDYV 118
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ G+ + D+ K+ + KIYGI G N + ++I N F L ++L+E+SE A
Sbjct: 119 WDAGVHDFADLNKFADKFDKKIYGIGSGAPANISLQEIIKKNDFDLGQWKLVESSEQAML 178
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+++ R + FL W PHP+N L +HYL GGE+ G + VYT+ R Y CPN
Sbjct: 179 AEVSRAVKKQKFVTFLGWTPHPMNVQLKMHYLKGGEKYFGDTGS-VYTLTRKGYAQACPN 237
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPS 300
I +LL N+ F+ +EN +M + NNK + ++ +P +L WL GV T DG+D
Sbjct: 238 IGKLLTNLSFTQEMENAIMAQVANNKVSNAEAAKAWIKANPAVLDKWLEGVKTLDGKDAL 297
Query: 301 RQLERFM 307
++ +
Sbjct: 298 SAVKAKL 304
>gi|94499134|ref|ZP_01305672.1| putative glycine betaine-binding ABC transporter [Oceanobacter sp.
RED65]
gi|94428766|gb|EAT13738.1| putative glycine betaine-binding ABC transporter [Oceanobacter sp.
RED65]
Length = 315
Score = 230 bits (585), Expect = 3e-58, Method: Composition-based stats.
Identities = 116/310 (37%), Positives = 181/310 (58%), Gaps = 4/310 (1%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M IL + +F A + C VRF WTD+ ATTA+ + +L +LGY+ I
Sbjct: 1 MRTILILAVFALIVVGHSAYADEQCDAVRFGVVDWTDVKATTAVAAELL-RVLGYEVEIT 59
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+VP T+ ++ N +DIF+G W PS+ P+++ ++ V NL+GAKY LAV
Sbjct: 60 KHSVPDTYEAMANNEVDIFLGNWMPSMAPVADPFVQNKQVERVRPNLKGAKYTLAVPQYV 119
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ G+ S+ DIA ++++ +IYG+E GN+GNQ ILDMI +N F LK F LIE SE
Sbjct: 120 YDAGVTSFADIATFQEQFEGRIYGLEKGNDGNQLILDMIESNAFGLKPFNLIETSERLML 179
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKC 238
+Q++ R+ VFL+W PHP+N ++ YL GG++ G A+VYT R+ + C
Sbjct: 180 AQVKGKIRDQRWIVFLAWAPHPMNERFDLVYLEGGDDYFGPNKGGATVYTNTRAGFASDC 239
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN+++ L+N++FSVA+E ++M +ILN R + +PD +++WL GV +G
Sbjct: 240 PNVAQFLQNLEFSVAMEGQVMDMILNQFVPHDRAARHWMYQNPDRVESWLKGVRHQNGAK 299
Query: 299 P-SRQLERFM 307
++ + R M
Sbjct: 300 ANAKAIARSM 309
>gi|289677584|ref|ZP_06498474.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. syringae FF5]
Length = 308
Score = 230 bits (585), Expect = 3e-58, Method: Composition-based stats.
Identities = 104/309 (33%), Positives = 171/309 (55%), Gaps = 3/309 (0%)
Query: 1 MYKILAVCLFLTTFSISYARDA--DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K+ S A A SC+ V+ AD GW+DIAAT A+TSV+LE LGY
Sbjct: 1 MKKLSTAVAVAVMTLGSLAAQAEDASCSTVKMADPGWSDIAATNAITSVVLE-GLGYTPK 59
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ LAVP+ + LK+ +D+F+G W P+ + F ++ G + +A+NL+G ++ LAV D
Sbjct: 60 VDTLAVPIAYGGLKDGKLDVFLGNWMPAQQGFYDKFVATGDVTQLAKNLEGTEFTLAVPD 119
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ G+ ++ D+ K+ + KIYGI G N + ++I N+F L ++L+E+SE A
Sbjct: 120 YVWDAGVHNFADLNKFADKFDKKIYGIGSGAPANLSLQEIIKKNEFDLGKWKLVESSETA 179
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+++ R+ + VFL W PHP+N + + G E SV+T+ R Y C
Sbjct: 180 MLAEVNRNVKKKAFVVFLGWTPHPMNVQIKGMHYLKGGEKYFGDTGSVFTLTRKGYAQAC 239
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN+ +LL N+ F++ +EN +M ++N K + ++ +P +L+ WL GV T DG+D
Sbjct: 240 PNVGKLLTNLSFTLDMENSIMAEVVNKKVSNSAAAKAWIKANPAVLEKWLEGVQTADGKD 299
Query: 299 PSRQLERFM 307
++ +
Sbjct: 300 GLAAVKAKL 308
>gi|190892827|ref|YP_001979369.1| proline/glycine betaine ABC transporter substrate-binding protein
[Rhizobium etli CIAT 652]
gi|190698106|gb|ACE92191.1| proline/glycine betaine ABC transporter, substrate-binding protein
[Rhizobium etli CIAT 652]
Length = 318
Score = 230 bits (585), Expect = 3e-58, Method: Composition-based stats.
Identities = 136/311 (43%), Positives = 207/311 (66%), Gaps = 6/311 (1%)
Query: 2 YKILAVCLF--LTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K++ L+ + ++A D DSC+ V F+D GWTDI ATTA SV+L+ +GY+T++
Sbjct: 7 FKLVTATAVAALSVATAAFAADPDSCSTVHFSDVGWTDITATTATASVVLKS-IGYQTDV 65
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
K+L+VPVT+ SLKNK IDIF+G W P+ EK + PY+++ S++ NL GAKY LA N
Sbjct: 66 KVLSVPVTYTSLKNKDIDIFLGNWMPTQEKDVRPYIDDKSVESFGPNLVGAKYTLATNAK 125
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
G LGIK ++DIA +K +L KIYGIEPGN+GN+ ++D+I N F +K ++E+SE
Sbjct: 126 GAELGIKDFKDIAAHKDDLDGKIYGIEPGNDGNRLVMDLIEKNTFGMKDMEVVESSEQGM 185
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDK 237
+Q+ R ++ P VFL WEPHP+N++ + YL GG+++ FG A VYT VR+ YL++
Sbjct: 186 LAQVARAEKAGKPVVFLGWEPHPMNTNFKLTYLTGGDDVFGPDFGGAKVYTNVRAGYLNE 245
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQ 297
CPN+ +LKN+ FS+ +EN++M IL++ ++ + L+ +P L+ WL GV T DG+
Sbjct: 246 CPNVGAMLKNLTFSLDMENQIMGKILDDGKEPEAAATEWLKANPAALEPWLAGVKTRDGK 305
Query: 298 -DPSRQLERFM 307
D + +
Sbjct: 306 GDALAAAKTGL 316
>gi|172063991|ref|YP_001811642.1| choline ABC transporter, periplasmic binding protein [Burkholderia
ambifaria MC40-6]
gi|171996508|gb|ACB67426.1| choline ABC transporter, periplasmic binding protein [Burkholderia
ambifaria MC40-6]
Length = 317
Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats.
Identities = 122/317 (38%), Positives = 184/317 (58%), Gaps = 12/317 (3%)
Query: 1 MYKILAVCLFLTTFSISYARDADS-------CTPVRFADTGWTDIAATTAMTSVILEEIL 53
M + A C VRFAD GWTDI +TTA+ S + E L
Sbjct: 1 MKSTKIAAFVAAMLATGAFATAAQAETDAATCRTVRFADIGWTDITSTTALASTVFE-GL 59
Query: 54 GYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLV-AENLQGAKY 112
GYK + +VP++F LK+K +D+ +GYW+P +K + P+L+ SI +V NL GAK
Sbjct: 60 GYKPTTTIASVPISFAGLKSKQLDVSLGYWWPVQQKQLQPFLDNKSINVVEPPNLSGAKA 119
Query: 113 MLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
LAV + G+K++ DIAK++ EL KIYGIEPG+ N I MI+ N++ L GF+L+
Sbjct: 120 TLAVPSYAYQAGLKTFDDIAKHRAELDGKIYGIEPGSSANATIQKMIDTNQYGLGGFKLV 179
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVV 230
E+SE + R R VFL WEPHP+N ++++YL GG+ +GEA VYT+
Sbjct: 180 ESSEAGMLVTVERAIREKKWVVFLGWEPHPMNIQISMNYLSGGDASFGPNYGEARVYTLT 239
Query: 231 RSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIG 290
D++ +CPN +L++N++FS LEN++M+ ++ NK + L+ +P +L WL G
Sbjct: 240 APDFISRCPNAGKLVENLRFSTQLENQLMQSVM-NKTKPADAAKAYLKKNPQVLDAWLAG 298
Query: 291 VTTFDGQDPSRQLERFM 307
V TFDG+D ++ ++
Sbjct: 299 VKTFDGKDGLPAVKAYL 315
>gi|330806730|ref|YP_004351192.1| ABC transporter periplasmic protein [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|327374838|gb|AEA66188.1| Putative ABC transporter, periplasmic component [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 306
Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats.
Identities = 108/308 (35%), Positives = 172/308 (55%), Gaps = 3/308 (0%)
Query: 1 MYKI-LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M K+ + L S A SC V+ AD GW+DIAAT A+T +L + +GYK +
Sbjct: 1 MQKLSTVLTAGLLALSSVSAWAEQSCETVKMADPGWSDIAATNAITGFLL-DGMGYKAKV 59
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
LAVP+TF LK+ +D+F+G W P+ + F ++ G + +A+NL G ++ LAV D
Sbjct: 60 DTLAVPITFGGLKDGQVDVFLGNWMPAQQGFYDKFVANGDVTQLAKNLDGTEFTLAVPDY 119
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+ G+ ++ D+ K+ + KIYGI G N + ++I N F + ++L+E+SE A
Sbjct: 120 VWDAGVHNFADLNKFADKFDKKIYGIGSGAPANLSLKEIIKTNDFGMGEWKLVESSEQAM 179
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+++ R + FL W PHP+N L +HYL GGE+ G + VYT+ R Y CP
Sbjct: 180 LAEVSRAVKKQKFVTFLGWTPHPMNVQLKMHYLKGGEKYFGDTGS-VYTLTRKGYAQACP 238
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDP 299
N+ +LL N+ F+ +EN +M ++NNK + ++ +P +L WL GV T DG+D
Sbjct: 239 NVGKLLTNLSFTQDMENSIMAEVVNNKVSNADAAKAWIKANPAVLDKWLDGVKTMDGKDA 298
Query: 300 SRQLERFM 307
++ +
Sbjct: 299 LAAVKAKL 306
>gi|28867406|ref|NP_790025.1| glycine/betaine family, ABC transporter substrate-binding protein
[Pseudomonas syringae pv. tomato str. DC3000]
gi|28850640|gb|AAO53720.1| glycine/betaine family, ABC transporter, substrate-binding protein
[Pseudomonas syringae pv. tomato str. DC3000]
Length = 308
Score = 229 bits (583), Expect = 4e-58, Method: Composition-based stats.
Identities = 104/309 (33%), Positives = 171/309 (55%), Gaps = 3/309 (0%)
Query: 1 MYKILAVCLFLTTFSISYARDA--DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M ++ S+A A SC+ V+ ADTGW+DIAAT A+T V+LE LGYK
Sbjct: 1 MKQLSTAVAVAVMTFGSFAAQAEDASCSTVKMADTGWSDIAATNAITGVVLE-GLGYKAK 59
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ LAVP+ + LK+ +D+F+G W P+ + F ++ G + +A NL+G ++ LAV D
Sbjct: 60 VDTLAVPIAYGGLKDGKLDVFLGNWMPAQQGFYDKFVATGDVTQLARNLEGTEFTLAVPD 119
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ G+ + D++K+ ++ KIYGI G N + ++I N+F L ++L+E+SE A
Sbjct: 120 YVWEAGVHDFTDLSKFAEKFDKKIYGIGSGAPANLSLQEIIKKNEFDLGQWKLVESSEQA 179
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+++ R+ + VFL W PHP+N + + G E SV+T+ R Y C
Sbjct: 180 MLAEVNRNVKKKAFVVFLGWTPHPMNVQIKGMHYLKGGEKYFGDTGSVFTLTRKGYAQAC 239
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN+ +LL N+ F++ +EN +M + N K + ++ +P +L WL GV T DG+D
Sbjct: 240 PNVGKLLTNLSFTLDMENSIMAEVTNKKLSNSAAAKAWIKANPAVLDTWLEGVKTVDGKD 299
Query: 299 PSRQLERFM 307
++ +
Sbjct: 300 GLAAVKAKL 308
>gi|257485575|ref|ZP_05639616.1| glycine betaine family ABC transporter, substrate-binding protein
[Pseudomonas syringae pv. tabaci ATCC 11528]
gi|330985714|gb|EGH83817.1| glycine betaine family ABC transporter substrate-binding protein
[Pseudomonas syringae pv. lachrymans str. M301315]
gi|331011865|gb|EGH91921.1| glycine betaine family ABC transporter substrate-binding protein
[Pseudomonas syringae pv. tabaci ATCC 11528]
Length = 308
Score = 229 bits (583), Expect = 4e-58, Method: Composition-based stats.
Identities = 104/309 (33%), Positives = 167/309 (54%), Gaps = 3/309 (0%)
Query: 1 MYKILAVCLFLTTFSISYARDA--DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K+ S A A SC+ V+ AD GW+DI AT A+ SV+LE LGYK
Sbjct: 1 MKKLSTAVAVAVMAFGSLAAQAEDASCSTVKMADPGWSDIGATNAIASVVLE-GLGYKAK 59
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ LAVP+ + LK+ +D+F+G W P+ + F ++ G + +A NL+G ++ LAV D
Sbjct: 60 VDTLAVPIAYGGLKDGKLDVFLGNWMPAQQGFYDKFVATGDVTQLARNLEGTEFTLAVPD 119
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ G+ + D+ K+ + KIYGI G N + ++I N+F L ++L+E+SE A
Sbjct: 120 YVWDAGVHDFADLNKFADKFDQKIYGIGAGAPANLSLQEIIKKNEFDLGKWKLVESSETA 179
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+++ R+ + VFL W PHP+N + + G E SV+T+ R Y C
Sbjct: 180 MLAEVNRNVKKKAFVVFLGWTPHPMNVQIKGMHYLKGGEKYFGDTGSVFTLTRKGYAQAC 239
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN+ +LL N+ F++ +EN +M + N K + ++ +P +L WL GV TFDG+D
Sbjct: 240 PNVGKLLTNLSFTLDMENSIMAEVANKKVSNSAAAKAWIKANPAVLDTWLEGVKTFDGKD 299
Query: 299 PSRQLERFM 307
++ +
Sbjct: 300 GLTAVKARL 308
>gi|115359206|ref|YP_776344.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia ambifaria AMMD]
gi|115284494|gb|ABI90010.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia ambifaria AMMD]
Length = 317
Score = 229 bits (583), Expect = 5e-58, Method: Composition-based stats.
Identities = 122/317 (38%), Positives = 185/317 (58%), Gaps = 12/317 (3%)
Query: 1 MYKILAVCLFLTTFSISYARDADS-------CTPVRFADTGWTDIAATTAMTSVILEEIL 53
M + A C VRFAD GWTDI +TTA+ S + E L
Sbjct: 1 MKSTKIAAFVAAMLATGAFATAAQAETDAATCRTVRFADIGWTDITSTTALASTVFE-GL 59
Query: 54 GYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLV-AENLQGAKY 112
GYK + +VP++F LK+K +D+ +GYW+P +K + P+L+ SI +V NL GAK
Sbjct: 60 GYKPTTTIASVPISFAGLKSKQLDVSLGYWWPVQQKQLQPFLDSKSINVVEPPNLSGAKA 119
Query: 113 MLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
LAV + G+K++ DIAK++ EL KIYGIEPG+ N I MI+ N++ L GF+L+
Sbjct: 120 TLAVPSYEYQAGLKTFDDIAKHRAELDGKIYGIEPGSSANATIQKMIDTNQYGLGGFKLV 179
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVV 230
E+SE + R R+ VFL WEPHP+N ++++YL GG+ +GEA VYT+
Sbjct: 180 ESSEAGMLVTVERAIRDKKWVVFLGWEPHPMNIQISMNYLSGGDASFGPNYGEARVYTLT 239
Query: 231 RSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIG 290
D++ +CPN +L++N++FS LEN++M+ ++ NK + L+ +P +L WL G
Sbjct: 240 APDFISRCPNAGKLVENLRFSTQLENQLMQSVM-NKTKPADAAKAYLKKNPQVLDAWLAG 298
Query: 291 VTTFDGQDPSRQLERFM 307
V TFDG+D ++ ++
Sbjct: 299 VKTFDGKDGLPAVKAYL 315
>gi|116253275|ref|YP_769113.1| solute-binding component of ABC transporter [Rhizobium
leguminosarum bv. viciae 3841]
gi|115257923|emb|CAK09021.1| putative solute-binding component of ABC transporter [Rhizobium
leguminosarum bv. viciae 3841]
Length = 319
Score = 229 bits (583), Expect = 5e-58, Method: Composition-based stats.
Identities = 140/311 (45%), Positives = 206/311 (66%), Gaps = 6/311 (1%)
Query: 2 YKILAVCLF--LTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K++ L+ + ++A D D+CT VRFAD GWTDI ATTA SVIL+ +GY+ ++
Sbjct: 7 FKLVTATAVAALSVATAAFAADPDNCTTVRFADVGWTDITATTATASVILKS-IGYEADV 65
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
K+L+VPVT+ SLKNK IDIF+G W P+ EK + PY+++ S++ NL GAKY LA N
Sbjct: 66 KVLSVPVTYTSLKNKDIDIFLGNWMPTQEKDVRPYIDDKSVESFGPNLVGAKYTLATNAK 125
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
G LGIK ++DIA +K +L KIYGIEPGN+GN+ ++DMI N+F LK ++E+SE
Sbjct: 126 GAELGIKDFKDIAAHKDDLDGKIYGIEPGNDGNRLVMDMIEKNEFGLKDLEVVESSEQGM 185
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDK 237
+Q+ R + P VFL WEPHP+N++ + YL GG+ + FG A V+T VR+ YLD+
Sbjct: 186 LAQVARADKAGKPVVFLGWEPHPMNTNFKLTYLTGGDNVFGPDFGGAKVFTNVRAGYLDE 245
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQ 297
CPN+ +LKN+ FS+ +EN++M ILN+ ++ + L+ +P L+ WL GV T DG+
Sbjct: 246 CPNVGLMLKNLTFSLDMENQIMGKILNDGKEPEAAASEWLKANPAALEPWLAGVKTRDGK 305
Query: 298 -DPSRQLERFM 307
+ + +
Sbjct: 306 GEALAAAKTGL 316
>gi|238023931|ref|YP_002908163.1| glycine betaine/L-proline ABC transporter periplasmic glycine
betaine/L-proline-binding protein [Burkholderia glumae
BGR1]
gi|237878596|gb|ACR30928.1| Glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia glumae
BGR1]
Length = 316
Score = 229 bits (583), Expect = 5e-58, Method: Composition-based stats.
Identities = 126/290 (43%), Positives = 182/290 (62%), Gaps = 5/290 (1%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFM 80
D +C VRFAD GW+DIAATT + S +L LGY + +VP+TF +K+K ID+F+
Sbjct: 26 DPQACKTVRFADVGWSDIAATTGLASTVL-AGLGYTPTKTIASVPITFAGIKSKQIDVFL 84
Query: 81 GYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
GYW P+++ IAP+ + G+IK++A NL GAKY LAV D + G+KS+ DI KY +L
Sbjct: 85 GYWSPTMDPIIAPFTKAGTIKVLATPNLTGAKYTLAVPDYVYQGGLKSFSDIQKYADKLD 144
Query: 140 AKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWE 199
KIYGIEPGN+GN I MI+ N++ L F+L+E+SE ++ R RN VFL WE
Sbjct: 145 GKIYGIEPGNDGNALIRKMIDGNQYGLGKFKLVESSEAGMLVEVNRAIRNKQWIVFLGWE 204
Query: 200 PHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENE 257
PHP+N + YL GG+ + +GEA V T DY +CPN ++ + N++F+ +EN
Sbjct: 205 PHPMNVQFKMDYLTGGDAVFGPNYGEARVLTATPPDYAARCPNAAKFVSNLQFTTEIENR 264
Query: 258 MMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+M I+ +K+D L+ +P +L WL GVTTFDG+ + R++
Sbjct: 265 VMVPIM-SKEDPNKAASAWLKANPQVLDKWLAGVTTFDGKPGLPAVRRYL 313
>gi|134292186|ref|YP_001115922.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia vietnamiensis G4]
gi|134135343|gb|ABO56457.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia vietnamiensis G4]
Length = 302
Score = 229 bits (583), Expect = 5e-58, Method: Composition-based stats.
Identities = 128/301 (42%), Positives = 184/301 (61%), Gaps = 5/301 (1%)
Query: 10 FLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFR 69
S YA D C VRFAD GW+DIAATT + S +L + LGY + +VP+TF
Sbjct: 1 MAAPMSAVYAADPPVCKTVRFADVGWSDIAATTGLASAML-QGLGYTPTKTIASVPITFA 59
Query: 70 SLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAVNDVGFALGIKSY 128
+K+K ID+F+GYW P+++ I P+ + G IK++A NL GAKY LAV D + G+KS+
Sbjct: 60 GIKSKQIDVFLGYWSPTMDPIIQPFTKAGQIKVLATPNLTGAKYTLAVPDYVYQGGLKSF 119
Query: 129 QDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQR 188
DI K+ +L KIYGIEPGN+GN I MI+ N+F L F+L+E+SE ++ R R
Sbjct: 120 ADIQKFADKLNGKIYGIEPGNDGNALIKKMIDGNQFGLGKFKLVESSEAGMLVEVNRAIR 179
Query: 189 NNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLK 246
+ VFL WEPHP+N + I YL GG+++ +GEA V T DY +CPN+++ +
Sbjct: 180 DKQWIVFLGWEPHPMNVQMKIDYLSGGDDVFGPNYGEAKVLTATPPDYAQRCPNVAKFVS 239
Query: 247 NIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERF 306
N++F+ +EN +M I+ NKQD L+ +P L WL GVTT DG+ ++ +
Sbjct: 240 NLQFTTTIENHVMVPIM-NKQDPNKAATEWLKANPQSLDKWLAGVTTIDGKPGLPAVKAY 298
Query: 307 M 307
+
Sbjct: 299 L 299
>gi|294678813|ref|YP_003579428.1| glycine betaine/L-proline ABC transporter periplasmic glycine
betaine/L-proline-binding protein [Rhodobacter
capsulatus SB 1003]
gi|294477633|gb|ADE87021.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Rhodobacter
capsulatus SB 1003]
Length = 314
Score = 228 bits (582), Expect = 6e-58, Method: Composition-based stats.
Identities = 113/307 (36%), Positives = 171/307 (55%), Gaps = 4/307 (1%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL 62
+ FL + + D SC +R +D GWTDI AT A+ SV+L LGY +K L
Sbjct: 8 RTGLSVAFLLSGAAMALADDGSCATIRMSDPGWTDITATNAVASVVL-TGLGYAPEVKTL 66
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
+VP+ + S+KN ID+F+G W P+ +KFI ++ +A+NL GAK+ LAV A
Sbjct: 67 SVPIGYESMKNGEIDVFLGNWMPAQQKFIDDLTAADAVDHLAQNLTGAKFTLAVPTAAAA 126
Query: 123 LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
G+ + D+A + + KIYGIEPG N I MI+ N F L+ + L+E+ E A +Q
Sbjct: 127 KGVTDFADLAAHGDDFDHKIYGIEPGAPANANIQKMIDGNDFGLRDWELVESGEQAMLAQ 186
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPN 240
+ R + VFL+W PHP+N++ ++ YL GG+ FG A+V+T+ R + CPN
Sbjct: 187 VDRAVKEGKGIVFLAWAPHPMNANFDLTYLSGGDAYFGPDFGGATVHTLARKGWAGACPN 246
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPS 300
+L N+ F + +EN +M IL D + ++ HP++L WL GVTT DGQ
Sbjct: 247 AGKLFSNLVFELGMENALMGSIL-GGTDARVAASDWIKAHPEVLGPWLDGVTTLDGQPGE 305
Query: 301 RQLERFM 307
++ +
Sbjct: 306 AAVKAAL 312
>gi|330976431|gb|EGH76486.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. aptata str. DSM 50252]
Length = 308
Score = 228 bits (582), Expect = 6e-58, Method: Composition-based stats.
Identities = 104/309 (33%), Positives = 171/309 (55%), Gaps = 3/309 (0%)
Query: 1 MYKILAVCLFLTTFSISYARDA--DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K+ S A A SC+ V+ AD GW+DIAAT A+TSV+LE LGY
Sbjct: 1 MKKLSTAVAVAVMTLGSLAAQAEDASCSTVKMADPGWSDIAATNAITSVVLE-GLGYTPK 59
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ LAVP+ + LK+ +D+F+G W P+ + F ++ G + +A+NL+G ++ LAV D
Sbjct: 60 VDTLAVPIAYGGLKDGKLDVFLGNWMPAQQGFYDKFVATGDVTQLAKNLEGTEFTLAVPD 119
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ G+ ++ D+ K+ + KIYGI G N + ++I N+F L ++L+E+SE A
Sbjct: 120 YVWDAGVHNFADLNKFADKFDKKIYGIGSGAPANLSLQEIIKKNEFDLGKWKLVESSETA 179
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+++ R+ + VFL W PHP+N + + G E SV+T+ R Y C
Sbjct: 180 MLAEVNRNVKKKAFVVFLGWTPHPMNVQIKGMHYLKGGEKYFGDTGSVFTLTRKGYAQAC 239
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN+ +LL N+ F++ +EN +M ++N K + ++ +P +L+ WL GV T DG+D
Sbjct: 240 PNVGKLLTNLSFTLDMENSIMAEVVNKKVSNSAAAKAWIKANPAVLEKWLEGVQTADGKD 299
Query: 299 PSRQLERFM 307
++ +
Sbjct: 300 GLATVKARL 308
>gi|121597968|ref|YP_990296.1| quaternary amine ABC transporter periplasmic substrate-binding
protein [Burkholderia mallei SAVP1]
gi|124381197|ref|YP_001024795.1| quaternary amine ABC transporter periplasmic substrate-binding
protein [Burkholderia mallei NCTC 10229]
gi|126447779|ref|YP_001079135.1| quaternary amine ABC transporter periplasmic substrate-binding
protein [Burkholderia mallei NCTC 10247]
gi|238563533|ref|ZP_00438731.2| ABC transporter, quaternary amine uptake transporter [Burkholderia
mallei GB8 horse 4]
gi|251767999|ref|ZP_04820355.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
mallei PRL-20]
gi|254175873|ref|ZP_04882532.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
mallei ATCC 10399]
gi|254203225|ref|ZP_04909587.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
mallei FMH]
gi|254208559|ref|ZP_04914908.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
mallei JHU]
gi|254355805|ref|ZP_04972084.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
mallei 2002721280]
gi|121225766|gb|ABM49297.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
mallei SAVP1]
gi|124289217|gb|ABM98486.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
mallei NCTC 10229]
gi|126240633|gb|ABO03745.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
mallei NCTC 10247]
gi|147746270|gb|EDK53348.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
mallei FMH]
gi|147751246|gb|EDK58314.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
mallei JHU]
gi|148024776|gb|EDK82959.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
mallei 2002721280]
gi|160696916|gb|EDP86886.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
mallei ATCC 10399]
gi|238520514|gb|EEP83973.1| ABC transporter, quaternary amine uptake transporter [Burkholderia
mallei GB8 horse 4]
gi|243061089|gb|EES43275.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
mallei PRL-20]
Length = 336
Score = 228 bits (582), Expect = 7e-58, Method: Composition-based stats.
Identities = 120/296 (40%), Positives = 188/296 (63%), Gaps = 5/296 (1%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNK 74
S S+A+D+ +C VRFAD GWTDI +TTA+ S++ + LGYK + +VP++F LK++
Sbjct: 41 SQSFAQDSAACRNVRFADIGWTDITSTTALASLLF-DGLGYKPTTTIASVPISFAGLKSR 99
Query: 75 GIDIFMGYWYPSLEKFIAPYLEEGSIKLV-AENLQGAKYMLAVNDVGFALGIKSYQDIAK 133
+D+ +GYW+P + + P+L+ SI +V NL GAK LAV + G+KS+ DIAK
Sbjct: 100 QLDVSLGYWWPVQQHQLQPFLDSKSISVVEPPNLSGAKATLAVPSYVYQAGLKSFDDIAK 159
Query: 134 YKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPA 193
++ EL KIYGIEPG+ N I MI+ N++ L GF+L+E+SE + R R+
Sbjct: 160 HRAELDGKIYGIEPGSSANATIQKMIDTNQYGLGGFKLVESSEAGMLVTVERAIRDKKWV 219
Query: 194 VFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFS 251
VFL WEPHP+N + ++YL GG+ +GEA VYT+ DY+ +CPN +L+ N++F+
Sbjct: 220 VFLGWEPHPMNIQIGMNYLSGGDAAFGPNYGEARVYTLTSPDYMARCPNAGKLVGNLRFT 279
Query: 252 VALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+EN++M+ ++ NK + +R +P +L WL GV T+DG+D ++ ++
Sbjct: 280 TQMENQLMQAVM-NKVKPAEAAKAYIRKNPQVLDVWLAGVKTYDGKDGLAAVKAYL 334
>gi|87122860|ref|ZP_01078730.1| hypothetical protein MED121_19756 [Marinomonas sp. MED121]
gi|86161871|gb|EAQ63166.1| hypothetical protein MED121_19756 [Marinomonas sp. MED121]
Length = 317
Score = 228 bits (582), Expect = 7e-58, Method: Composition-based stats.
Identities = 115/290 (39%), Positives = 181/290 (62%), Gaps = 5/290 (1%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
++ C V F+D GWTDI AT +TS ILE LGY+T + LL VPV F SLK+ ID+F
Sbjct: 29 QEPSQCQKVTFSDPGWTDIGATNGITSTILE-GLGYQTEVFLLGVPVGFESLKSGEIDLF 87
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
MG W P+ FI Y + I V NL+G K+ LAV + + G++S+ D+ K++ +
Sbjct: 88 MGNWMPAQSGFIDQY--KEDIDQVRTNLEGVKFTLAVPEFVYNAGVQSFADLHKFENQFR 145
Query: 140 AKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWE 199
+KIYGIE G NQ + MI++N F L ++++E+ E A +Q+ R R + VFL WE
Sbjct: 146 SKIYGIEAGAPANQNLQKMIDSNDFGLGDWKVVESGEQAMLTQVNRSVRRDKFIVFLGWE 205
Query: 200 PHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENE 257
PHP+N + ++ YL GG++ +G A+++T+ R Y +C N+ L++N+KFS+ +ENE
Sbjct: 206 PHPMNVNFDLKYLSGGDKYFGPNYGGATIHTLSRKGYSQECSNVGTLVQNLKFSLTMENE 265
Query: 258 MMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
++ +LNN ++ + + L +PD+L WL GVTT+DG + +++ +
Sbjct: 266 IIGEVLNNAKNPKVAAKEWLTANPDVLDTWLEGVTTYDGGNGLTAVKQHL 315
>gi|171315451|ref|ZP_02904688.1| choline ABC transporter, periplasmic binding protein [Burkholderia
ambifaria MEX-5]
gi|171099451|gb|EDT44186.1| choline ABC transporter, periplasmic binding protein [Burkholderia
ambifaria MEX-5]
Length = 317
Score = 228 bits (581), Expect = 7e-58, Method: Composition-based stats.
Identities = 121/317 (38%), Positives = 184/317 (58%), Gaps = 12/317 (3%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTP-------VRFADTGWTDIAATTAMTSVILEEIL 53
M + A VRFAD GWTDI +TTA+ S + E L
Sbjct: 1 MKSTKIAAFVAAVLATGAFATAAQAETDAATCRNVRFADIGWTDITSTTALASTVFE-GL 59
Query: 54 GYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLV-AENLQGAKY 112
GYK + +VP++F LK+K +D+ +GYW+P +K + P+L+ SI +V NL GAK
Sbjct: 60 GYKPTTTIASVPISFAGLKSKQLDVSLGYWWPVQQKQLQPFLDSKSINVVEPPNLSGAKA 119
Query: 113 MLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
LAV + G+K+++DIAK++ EL KIYGIEPG+ N I MI+ N++ L GF+L+
Sbjct: 120 TLAVPSYAYQAGLKTFEDIAKHRAELDGKIYGIEPGSSANATIQKMIDTNQYGLGGFKLV 179
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVV 230
E+SE + R R VFL WEPHP+N ++++YL GG+ +GEA VYT+
Sbjct: 180 ESSEAGMLVTVERAIREKKWVVFLGWEPHPMNIQISMNYLSGGDASFGPNYGEARVYTLT 239
Query: 231 RSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIG 290
D++ +CPN +L++N++FS LEN++M+ ++ NK + L+ +P +L WL G
Sbjct: 240 APDFISRCPNAGKLVENLRFSTQLENQLMQSVM-NKTKPADAAKAYLKKNPQVLDAWLAG 298
Query: 291 VTTFDGQDPSRQLERFM 307
V TFDG+D ++ ++
Sbjct: 299 VKTFDGKDGLPAVKAYL 315
>gi|222086661|ref|YP_002545195.1| proline/glycine betaine ABC transporter [Agrobacterium radiobacter
K84]
gi|221724109|gb|ACM27265.1| proline/glycine betaine ABC transporter [Agrobacterium radiobacter
K84]
Length = 318
Score = 228 bits (581), Expect = 8e-58, Method: Composition-based stats.
Identities = 139/317 (43%), Positives = 205/317 (64%), Gaps = 11/317 (3%)
Query: 1 MYKILAVCLFLTTFSISYA--------RDADSCTPVRFADTGWTDIAATTAMTSVILEEI 52
M K+ L + + + SC+ V FAD GWTDI +TTA S++L+
Sbjct: 1 MIKMTFTALAFASTLSALTLGATAASAAEPASCSTVHFADVGWTDITSTTATASILLKA- 59
Query: 53 LGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKY 112
LGY T++K+LAVPVT++SLKNK ID+F+G W PS+ + I P+ E+ S++ V NL+GAKY
Sbjct: 60 LGYDTDVKVLAVPVTYQSLKNKDIDVFLGNWMPSMAENIKPFAEDKSVETVGANLEGAKY 119
Query: 113 MLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
LA N+ G ALGIK ++DIA +K +L KIYGIEPGN+GN+ I+DM++ N F LKGF ++
Sbjct: 120 TLATNEKGAALGIKDFKDIATHKDDLDGKIYGIEPGNDGNRLIIDMVDKNTFGLKGFEVV 179
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVV 230
E+SE +Q+ R + P +FL W PHP+NS+ + YL GG+++ +G A+VYT V
Sbjct: 180 ESSEQGMLAQVSRADKEGKPIIFLGWAPHPMNSNYKMTYLSGGDDVFGPNYGGATVYTNV 239
Query: 231 RSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIG 290
R+ YL +CPN+ +KN+ FS+ +ENE+M ILN+ ++ + L+ +P + WL G
Sbjct: 240 RAGYLQECPNVGAFVKNLVFSLPMENEIMGKILNDSKEPEVAATEWLKANPTAITPWLAG 299
Query: 291 VTTFDGQDPSRQLERFM 307
VTT DG D ++ +
Sbjct: 300 VTTKDGGDGLAAVKAKL 316
>gi|170697140|ref|ZP_02888235.1| choline ABC transporter, periplasmic binding protein [Burkholderia
ambifaria IOP40-10]
gi|170137976|gb|EDT06209.1| choline ABC transporter, periplasmic binding protein [Burkholderia
ambifaria IOP40-10]
Length = 317
Score = 228 bits (581), Expect = 8e-58, Method: Composition-based stats.
Identities = 122/317 (38%), Positives = 183/317 (57%), Gaps = 12/317 (3%)
Query: 1 MYKILAVCLFLTTFSISYARDADS-------CTPVRFADTGWTDIAATTAMTSVILEEIL 53
M + A C VRFAD GWTDI +TTA+ S + E L
Sbjct: 1 MKSTKIAAFVAAMLATGAFATAAQAETDAATCRTVRFADIGWTDITSTTALASTVFE-GL 59
Query: 54 GYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLV-AENLQGAKY 112
GYK + +VP++F LK+K +D+ +GYW+P +K + P+L+ SI +V NL GAK
Sbjct: 60 GYKPTTTIASVPISFAGLKSKQLDVSLGYWWPVQQKQLQPFLDSKSINVVEPPNLSGAKA 119
Query: 113 MLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
LAV + G+K++ DIAK++ EL KIYGIEPG+ N I MI+ N++ L GF+L+
Sbjct: 120 TLAVPSYEYQAGLKTFDDIAKHRAELDGKIYGIEPGSSANATIQKMIDTNQYGLGGFKLV 179
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVV 230
E+SE + R R VFL WEPHP+N ++++YL GG+ +GEA VYT+
Sbjct: 180 ESSEAGMLVTVERAIREKKWVVFLGWEPHPMNIQISMNYLSGGDASFGPNYGEARVYTLT 239
Query: 231 RSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIG 290
D++ +CPN +L+ N++FS LEN++M+ ++ NK + L+ +P +L WL G
Sbjct: 240 APDFISRCPNAGKLVGNLRFSTQLENQLMQSVM-NKTKPADAAKAYLKKNPQVLDAWLAG 298
Query: 291 VTTFDGQDPSRQLERFM 307
V TFDG+D ++ ++
Sbjct: 299 VKTFDGKDGLPAVKAYL 315
>gi|325293640|ref|YP_004279504.1| proline/glycine/betaine ABC transporter substrate-binding protein
[Agrobacterium sp. H13-3]
gi|325061493|gb|ADY65184.1| proline/glycine/betaine ABC transporter, substrate binding protein
[Agrobacterium sp. H13-3]
Length = 317
Score = 228 bits (581), Expect = 8e-58, Method: Composition-based stats.
Identities = 142/306 (46%), Positives = 206/306 (67%), Gaps = 4/306 (1%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
LA + + TF+ + A + SC VRF+D GWTDI ATTA +V+L+ LGY+T++KLL+V
Sbjct: 11 LAAAISVMTFNAAGAAEPVSCGKVRFSDVGWTDITATTATATVLLKS-LGYETDVKLLSV 69
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
PVT+ SLKNK ID+F+G W P++E IAPY ++ S++ + ENL GAKY LA N G LG
Sbjct: 70 PVTYTSLKNKDIDVFLGNWMPTMEGDIAPYRDDKSVETLRENLTGAKYTLATNAKGAELG 129
Query: 125 IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
IK ++DIA + +LG KIYGIEPGN+GN+ ILDM+ + F LK F ++E+SE SQ+
Sbjct: 130 IKDFKDIAAHSGDLGGKIYGIEPGNDGNRLILDMVAKDTFGLKSFEVVESSEQGMLSQVA 189
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF--GEASVYTVVRSDYLDKCPNIS 242
R ++ P VFL WEPHP+N++ + YL GG+E+ G G A++YT VR Y ++CPN+
Sbjct: 190 RAGKSGEPIVFLGWEPHPMNTNFKLTYLTGGDEVFGPNLGGATIYTNVRKGYTEECPNVG 249
Query: 243 RLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDG-QDPSR 301
LKN++FS+ +ENE+M ILN+ + + L+ +P ++ WL V T DG D
Sbjct: 250 VFLKNLEFSLPMENEIMGKILNDGLEGEAAATAWLKANPAAIEPWLANVKTKDGSADALP 309
Query: 302 QLERFM 307
+++ +
Sbjct: 310 AVKKAL 315
>gi|53721602|ref|YP_110587.1| lipoprotein [Burkholderia pseudomallei K96243]
gi|76819002|ref|YP_337278.1| ABC transporter periplasmic glycine/betaine-binding protein
[Burkholderia pseudomallei 1710b]
gi|134284191|ref|ZP_01770884.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 305]
gi|167722704|ref|ZP_02405940.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei DM98]
gi|167741673|ref|ZP_02414447.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 14]
gi|167827238|ref|ZP_02458709.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 9]
gi|167848730|ref|ZP_02474238.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei B7210]
gi|167897322|ref|ZP_02484724.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 7894]
gi|167913988|ref|ZP_02501079.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 112]
gi|167921901|ref|ZP_02508992.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei BCC215]
gi|226195052|ref|ZP_03790643.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei Pakistan 9]
gi|254262774|ref|ZP_04953639.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 1710a]
gi|52212016|emb|CAH38023.1| putative lipoprotein [Burkholderia pseudomallei K96243]
gi|76583475|gb|ABA52949.1| ABC transporter, periplasmic glycine/betaine-binding protein
[Burkholderia pseudomallei 1710b]
gi|134244509|gb|EBA44614.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 305]
gi|225932857|gb|EEH28853.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei Pakistan 9]
gi|254213776|gb|EET03161.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 1710a]
Length = 316
Score = 228 bits (581), Expect = 8e-58, Method: Composition-based stats.
Identities = 121/296 (40%), Positives = 188/296 (63%), Gaps = 5/296 (1%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNK 74
S S+A+D+ +C VRFAD GWTDI +TTA+ S++ + LGYK + +VP++F LKN+
Sbjct: 21 SQSFAQDSAACRNVRFADIGWTDITSTTALASLLF-DGLGYKPTTTIASVPISFAGLKNR 79
Query: 75 GIDIFMGYWYPSLEKFIAPYLEEGSIKLV-AENLQGAKYMLAVNDVGFALGIKSYQDIAK 133
+D+ +GYW+P + + P+L+ SI +V NL GAK LAV + G+KS+ DIAK
Sbjct: 80 QLDVSLGYWWPVQQHQLQPFLDSKSISVVEPPNLSGAKATLAVPSYVYQAGLKSFDDIAK 139
Query: 134 YKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPA 193
++ EL KIYGIEPG+ N I MI+ N++ L GF+L+E+SE + R R+
Sbjct: 140 HRAELDGKIYGIEPGSSANATIQKMIDTNQYGLGGFKLVESSEAGMLVTVERAIRDKKWV 199
Query: 194 VFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFS 251
VFL WEPHP+N + ++YL GG+ +GEA VYT+ DY+ +CPN +L+ N++F+
Sbjct: 200 VFLGWEPHPMNIQIGMNYLSGGDAAFGPNYGEARVYTLTSPDYMARCPNAGKLVGNLRFT 259
Query: 252 VALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+EN++M+ ++ NK + +R +P +L WL GV T+DG+D ++ ++
Sbjct: 260 TQMENQLMQAVM-NKVKPAEAAKAYIRKNPQVLDAWLAGVKTYDGKDGLAAVKAYL 314
>gi|146278348|ref|YP_001168507.1| substrate-binding region of ABC-type glycine betaine transport
system [Rhodobacter sphaeroides ATCC 17025]
gi|145556589|gb|ABP71202.1| Substrate-binding region of ABC-type glycine betaine transport
system [Rhodobacter sphaeroides ATCC 17025]
Length = 308
Score = 228 bits (580), Expect = 9e-58, Method: Composition-based stats.
Identities = 122/291 (41%), Positives = 178/291 (61%), Gaps = 3/291 (1%)
Query: 17 SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGI 76
A D C V F+D GWTDI TT+ T ILE LGY+ + +L VPVT+ S+ +
Sbjct: 19 GPALAQDQCREVTFSDVGWTDITVTTSATRQILEA-LGYEVEVDILGVPVTYASMDKGDV 77
Query: 77 DIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKK 136
D+F+G W P+ E I PYLE+G+I+ + NL+G KY LAV + G+K+Y DIA +K
Sbjct: 78 DVFLGTWLPAQEGAIGPYLEKGTIEEITINLEGTKYTLAVPTYLYDKGLKTYADIASFKD 137
Query: 137 ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFL 196
EL K+YGIEPGNEGN+ +L + L+GF ++++SE +Q+ R VFL
Sbjct: 138 ELDGKVYGIEPGNEGNEYLLSLTEA-GNPLEGFEIVQSSEQGMLAQVARFYPQEKGVVFL 196
Query: 197 SWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALEN 256
WEPHP+N+ ++ YLPGGE+ G E V TV R + ++CPN+++LL KFS+ +EN
Sbjct: 197 GWEPHPMNATFSLKYLPGGEDFFGK-EGVVKTVARKGFKEECPNVTKLLSQQKFSLPMEN 255
Query: 257 EMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
E+M IL++ + L+ +PD + WL GVTT DGQ+ +++ +
Sbjct: 256 EIMGKILDDGMEPDAAVLEWLKANPDTIDPWLAGVTTTDGQEGLPVVKQTL 306
>gi|167578602|ref|ZP_02371476.1| ABC transporter, periplasmic glycine/betaine-binding protein
[Burkholderia thailandensis TXDOH]
Length = 316
Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats.
Identities = 123/296 (41%), Positives = 189/296 (63%), Gaps = 5/296 (1%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNK 74
S S+A+D+ +C VRFAD GWTDI +TTA+ S++ + LGYK + +VP++F LKNK
Sbjct: 21 SQSFAQDSAACRNVRFADIGWTDITSTTALASLLF-DGLGYKPTTTISSVPISFAGLKNK 79
Query: 75 GIDIFMGYWYPSLEKFIAPYLEEGSIKLV-AENLQGAKYMLAVNDVGFALGIKSYQDIAK 133
+D+ +GYW+P + + P+L+ SI LV NL GAK LAV + G+KS+ DIAK
Sbjct: 80 QLDVSLGYWWPVQQHQLQPFLDSKSISLVEPPNLSGAKATLAVPSYVYQAGLKSFDDIAK 139
Query: 134 YKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPA 193
++ EL KIYGIEPG+ N I MI+ N++ L GF+L+E+SE + R R+
Sbjct: 140 HRAELDGKIYGIEPGSSANATIQKMIDTNQYGLGGFKLVESSEAGMLVTVDRAIRDKKWV 199
Query: 194 VFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFS 251
VFL WEPHP+N ++++YL GG+ +GEA VYT+ DY+ +CPN +L+ N++F+
Sbjct: 200 VFLGWEPHPMNIQISMNYLSGGDAAFGPNYGEARVYTLTSPDYIARCPNAGKLVGNLRFT 259
Query: 252 VALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+EN++M+ ++ NK + +R +P +L WL GV T+DG+D ++ ++
Sbjct: 260 TQMENQLMQAVM-NKVKPAEAAKAYIRKNPQVLDAWLAGVKTYDGKDGLAAVKAYL 314
>gi|167616743|ref|ZP_02385374.1| ABC transporter, periplasmic glycine/betaine-binding protein
[Burkholderia thailandensis Bt4]
Length = 316
Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats.
Identities = 123/296 (41%), Positives = 189/296 (63%), Gaps = 5/296 (1%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNK 74
S S+A+D+ +C VRFAD GWTDI +TTA+ S++ + LGYK + +VP++F LKNK
Sbjct: 21 SQSFAQDSAACRNVRFADIGWTDITSTTALASLLF-DGLGYKPTTTISSVPISFAGLKNK 79
Query: 75 GIDIFMGYWYPSLEKFIAPYLEEGSIKLV-AENLQGAKYMLAVNDVGFALGIKSYQDIAK 133
+D+ +GYW+P + + P+L+ SI LV NL GAK LAV + G+KS+ DIAK
Sbjct: 80 QLDVSLGYWWPVQQHQLQPFLDSKSISLVEPPNLSGAKATLAVPSYVYQAGLKSFDDIAK 139
Query: 134 YKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPA 193
++ EL KIYGIEPG+ N I MI+ N++ L GF+L+E+SE + R R+
Sbjct: 140 HRAELDGKIYGIEPGSSANATIQKMIDTNQYGLGGFKLVESSEAGMLVTVDRAIRDKKWV 199
Query: 194 VFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFS 251
VFL WEPHP+N ++++YL GG+ +GEA VYT+ DY+ +CPN +L+ N++F+
Sbjct: 200 VFLGWEPHPMNIQISMNYLSGGDAAFGPNYGEARVYTLTSPDYMARCPNAGKLVGNLRFT 259
Query: 252 VALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+EN++M+ ++ NK + +R +P +L WL GV T+DG+D ++ ++
Sbjct: 260 TQMENQLMQAVM-NKVKPAEAAKAYIRKNPQVLDAWLAGVKTYDGKDGLAAVKAYL 314
>gi|78060807|ref|YP_367382.1| ABC proline/glycine betaine transporter, periplasmic ligand binding
protein [Burkholderia sp. 383]
gi|77965357|gb|ABB06738.1| ABC proline/glycine betaine transporter, periplasmic ligand binding
protein [Burkholderia sp. 383]
Length = 316
Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats.
Identities = 126/310 (40%), Positives = 191/310 (61%), Gaps = 5/310 (1%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M ++A + A + +C VR AD GW+DIAATT + S +L LGY +
Sbjct: 6 MAALVAALCMSAAVHSAGAAEPAACRNVRMADVGWSDIAATTGLASTML-SALGYNPSKT 64
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAVNDV 119
+ +VP+TF +K+K IDIF+GYW PS++ IAP+++ GSIK++ NL+GAK+ LAV D
Sbjct: 65 IASVPITFAGVKSKQIDIFLGYWSPSMDPIIAPFVKSGSIKVLPEPNLKGAKFTLAVPDY 124
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+ G++++ D+ KY +L +IYGIEPGN+GNQ I MI NK + F+L+E+SE
Sbjct: 125 VYQAGLRTFADLPKYADKLQYRIYGIEPGNDGNQLIGKMIRENKDGIGKFKLVESSEAGM 184
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDK 237
++ R R+ VFL+WEPHP+N+ I+YL GG+++ +GEA V+TV DY +
Sbjct: 185 LVELNRAVRDKQWIVFLAWEPHPMNAQHRINYLSGGDDVFGPNYGEAKVFTVEPPDYEAR 244
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQ 297
CPN+++ N+ F+ LEN +M I+ N QD L+ + +L WL GVTTFDG+
Sbjct: 245 CPNVAKFASNLHFTTELENHLMIPIM-NHQDPNQAATEWLKRNTSMLDTWLAGVTTFDGK 303
Query: 298 DPSRQLERFM 307
++ ++
Sbjct: 304 PALPAVKAYL 313
>gi|83717388|ref|YP_440043.1| ABC transporter periplasmic glycine/betaine-binding protein
[Burkholderia thailandensis E264]
gi|257143231|ref|ZP_05591493.1| ABC transporter, periplasmic glycine/betaine-binding protein
[Burkholderia thailandensis E264]
gi|83651213|gb|ABC35277.1| ABC transporter, periplasmic glycine/betaine-binding protein
[Burkholderia thailandensis E264]
Length = 316
Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats.
Identities = 123/296 (41%), Positives = 189/296 (63%), Gaps = 5/296 (1%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNK 74
S S+A+D+ +C VRFAD GWTDI +TTA+ S++ + LGYK + +VP++F LKNK
Sbjct: 21 SQSFAQDSAACRNVRFADIGWTDITSTTALASLLF-DGLGYKPTTTISSVPISFAGLKNK 79
Query: 75 GIDIFMGYWYPSLEKFIAPYLEEGSIKLV-AENLQGAKYMLAVNDVGFALGIKSYQDIAK 133
+D+ +GYW+P + + P+L+ SI LV NL GAK LAV + G+KS+ DIAK
Sbjct: 80 QLDVSLGYWWPVQQHQLQPFLDSKSISLVEPPNLSGAKATLAVPSYVYQAGLKSFDDIAK 139
Query: 134 YKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPA 193
++ EL KIYGIEPG+ N I MI+ N++ L GF+L+E+SE + R R+
Sbjct: 140 HRAELDGKIYGIEPGSSANATIQKMIDTNQYGLGGFKLVESSEAGMLVTVDRAIRDKKWV 199
Query: 194 VFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFS 251
VFL WEPHP+N ++++YL GG+ +GEA VYT+ DY+ +CPN +L+ N++F+
Sbjct: 200 VFLGWEPHPMNIQISMNYLSGGDAAFGPNYGEARVYTLTSPDYMARCPNAGKLVGNLRFT 259
Query: 252 VALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+EN++M+ ++ NK + +R +P +L WL GV T+DG+D ++ ++
Sbjct: 260 TQMENQLMQAVM-NKVKPAEAAKAYIRKNPQVLDAWLAGVKTYDGKDGLAAVKAYL 314
>gi|121610169|ref|YP_997976.1| glycine betaine ABC transporter substrate-binding protein
[Verminephrobacter eiseniae EF01-2]
gi|121554809|gb|ABM58958.1| Substrate-binding region of ABC-type glycine betaine transport
system [Verminephrobacter eiseniae EF01-2]
Length = 316
Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats.
Identities = 135/318 (42%), Positives = 198/318 (62%), Gaps = 11/318 (3%)
Query: 1 MYKILAVCLFLTTFSI------SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
M K A+ FL + + A + SC VRFAD GW+DIAATT + SV+LE LG
Sbjct: 1 MTKRFALSGFLGLVMLCAPLAQAAAAEPASCKTVRFADVGWSDIAATTGLASVVLE-GLG 59
Query: 55 YKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYM 113
Y+ ++ + ++P+ F +K+K ID F+GYW+PS+ I P+++ G IK++ NL GAKY
Sbjct: 60 YQPSVTIASLPIAFTGIKSKQIDAFLGYWFPSMTPIIEPFVKAGQIKVLDRPNLVGAKYT 119
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
LAV + G+K++ DIAK+ KEL K+YGIEPGN+GN + MI+ N++ LKGF+L+E
Sbjct: 120 LAVPAYLYDKGLKTFTDIAKFHKELDGKLYGIEPGNDGNALMQGMIDKNEYGLKGFKLVE 179
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF--GEASVYTVVR 231
+SE ++++R R+ VFL WEPHP+N + + YL GG+ + G GEA V+T +
Sbjct: 180 SSEAGMLAEVQRAARSGKAIVFLGWEPHPMNVQMKMKYLQGGDAVFGPNLGEAKVFTALP 239
Query: 232 SDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGV 291
DY +CPN++RLLKN++F+ +EN +M IL K R L+ +P L WL GV
Sbjct: 240 PDYEARCPNVARLLKNLRFTTDIENAVMLDIL-EKVKPSDAARAYLKKNPAPLGEWLDGV 298
Query: 292 TTFDGQDPSRQLERFMNN 309
TF GQ+ + + N
Sbjct: 299 KTFSGQEGLPAVTAALKN 316
>gi|119945743|ref|YP_943423.1| substrate-binding region of ABC-type glycine betaine transport
system [Psychromonas ingrahamii 37]
gi|119864347|gb|ABM03824.1| Substrate-binding region of ABC-type glycine betaine transport
system [Psychromonas ingrahamii 37]
Length = 310
Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats.
Identities = 126/310 (40%), Positives = 194/310 (62%), Gaps = 3/310 (0%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M + + T +++ C VRF+D GWTDI +TTA+TS +L + +GYKT+ +
Sbjct: 1 MKLKKILTMLAATVALTANAADQQCETVRFSDVGWTDITSTTAITSTLL-QGMGYKTDTQ 59
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
LL+VPVT++S++N ID+F+G W P+++ I Y + G+++ + +NL GAKY LAV
Sbjct: 60 LLSVPVTYKSIENGDIDVFLGNWMPTMKGDIQSYTDAGTVETIHKNLSGAKYTLAVPQYV 119
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ G++++ D+AK+ + ++IYGIEPGN+GN+ I DMI + F LK F L+E+SE
Sbjct: 120 YDAGVQNFADLAKFADKFDSEIYGIEPGNDGNRLIQDMIAKDAFGLKDFELVESSEAGML 179
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKC 238
SQ++R R N VFL W PHP+N++ ++ YL GG++ FG ASVYT VR Y C
Sbjct: 180 SQVKRATRRNNWVVFLGWAPHPMNANFDLAYLAGGDDFFGPDFGGASVYTNVRKGYTQAC 239
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN+ LL N+ F++A ENE+M ILN + + L+ +P +L WL GV T DG+
Sbjct: 240 PNVGTLLTNLTFTLAAENEVMAAILNEGKKPEDAATAWLKNNPSVLNAWLTGVKTIDGKP 299
Query: 299 PSRQLERFMN 308
++ ++
Sbjct: 300 ALPAVKAYLK 309
>gi|260462557|ref|ZP_05810764.1| choline ABC transporter, periplasmic binding protein [Mesorhizobium
opportunistum WSM2075]
gi|259031753|gb|EEW33022.1| choline ABC transporter, periplasmic binding protein [Mesorhizobium
opportunistum WSM2075]
Length = 311
Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats.
Identities = 129/300 (43%), Positives = 178/300 (59%), Gaps = 3/300 (1%)
Query: 8 CLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVT 67
+ S ++A D SC VR +D GWTDI ATT + SV+L LGY+ L+VPVT
Sbjct: 13 LAAFLSTSAAFAGDPASCKAVRLSDVGWTDIQATTGVASVLL-TALGYEPQTIQLSVPVT 71
Query: 68 FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKS 127
SLKNK +D+F+G W PS+ I Y +GS++ ++ NL GA Y + V G+KS
Sbjct: 72 MASLKNKDLDVFLGNWMPSMTNDIKDYTADGSVETISTNLTGAGYGIVVPTYVADAGVKS 131
Query: 128 YQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQ 187
DI K+K + KIYGIE GN+GN+ ILDMI N K +L+GF L+E+SE +Q +
Sbjct: 132 LTDIGKFKDKFNGKIYGIEAGNDGNRIILDMIKNPKDNLEGFELVESSEAGMLTQAEQSM 191
Query: 188 RNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKN 247
+NN FL W PHP+ + I YL G SGFG A+VYTV R Y +CPN + + N
Sbjct: 192 KNNEWIAFLGWTPHPVMGAMKITYL-DGMGDSGFGAATVYTVARKGYTTECPNAGKFIAN 250
Query: 248 IKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+KF++ +E +MM IL D V L+ +PD +K W+ GVTTFDG D + ++ +
Sbjct: 251 LKFNLDMEGQMMDAILKGG-DANTVATDWLKKNPDAVKPWIAGVTTFDGGDAAAAIKTAL 309
>gi|84686270|ref|ZP_01014165.1| putative glycine betaine-binding abc transporter protein
[Maritimibacter alkaliphilus HTCC2654]
gi|84665797|gb|EAQ12272.1| putative glycine betaine-binding abc transporter protein
[Rhodobacterales bacterium HTCC2654]
Length = 307
Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats.
Identities = 141/287 (49%), Positives = 191/287 (66%), Gaps = 3/287 (1%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYW 83
C V F+D GWTDI ATTA T+VIL + LGY+T+IK+L+VPVT+ S+ IDIF+G W
Sbjct: 22 QCDEVTFSDVGWTDITATTAATTVIL-DALGYETDIKVLSVPVTYTSMAEGDIDIFLGNW 80
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIY 143
P++E IAPY E G++ V ENL+GAKY LAVN LGI + DIA ++ L KIY
Sbjct: 81 MPTMEGDIAPYREAGTVVTVRENLEGAKYTLAVNRAAMDLGIADFGDIASQREALEGKIY 140
Query: 144 GIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPI 203
GIEPGN+GN+ I+DMI N F L+GF ++E+SE +Q+ R + + P VFL WEPHP+
Sbjct: 141 GIEPGNDGNRLIMDMIEGNAFDLEGFEVVESSEQGMLAQVDRATKRDEPIVFLGWEPHPM 200
Query: 204 NSDLNIHYLPGGEEISGF--GEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKL 261
N++ + YL GG+E G G A+VYT R+ Y+++CPN+ LL N+KF++A+ENE+M
Sbjct: 201 NANFEMGYLTGGDEFFGPDLGGATVYTNTRAGYVEECPNVGALLGNLKFTLAMENEIMGA 260
Query: 262 ILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
ILN+ +D L +PD K WL GVTT DG D + +N
Sbjct: 261 ILNDGEDPTDAASAWLAANPDAWKPWLDGVTTKDGGDAVEAVSAALN 307
>gi|325272500|ref|ZP_08138878.1| choline ABC transporter periplasmic binding protein [Pseudomonas
sp. TJI-51]
gi|324102361|gb|EGB99829.1| choline ABC transporter periplasmic binding protein [Pseudomonas
sp. TJI-51]
Length = 309
Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats.
Identities = 108/304 (35%), Positives = 174/304 (57%), Gaps = 2/304 (0%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
+L + L L A D C+ ++ AD GW+DIA T A+ ++LE LGY+ I LA
Sbjct: 8 VLTLALGLGITPAHAADDDAQCSTIKMADPGWSDIATTNAVARLLLES-LGYQVKIDSLA 66
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
VP+ + LK+ +D F+G W P+ + F ++ G ++ ++ NL+G ++ LAV D +
Sbjct: 67 VPIIYGGLKDGRVDAFLGNWMPAQQGFHDKFVANGDVQQLSRNLEGTEFTLAVPDYVWNA 126
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
G+K + D+ K+ + K+YGI G N + +I+NN+F L ++L+E+SE A +Q+
Sbjct: 127 GVKDFADLHKHADQFDKKLYGIGSGAPANLSLKQIIDNNEFDLGQWKLVESSEQAMLTQV 186
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
R + FL W PHP+N L +HYL GGE+ G + VYT+ R Y CPN ++
Sbjct: 187 DRAVKKQQFITFLGWTPHPMNVKLKMHYLTGGEKWFGS-KGQVYTLTRKGYPQACPNAAK 245
Query: 244 LLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQL 303
LL N+KF++ +EN +M +++ K R ++THP+LL+ WL GVTT D +
Sbjct: 246 LLGNLKFTLDMENSIMAQVVDKKISFDDAARAWVKTHPELLEGWLAGVTTKADGDALEAV 305
Query: 304 ERFM 307
+ +
Sbjct: 306 KAKL 309
>gi|227822904|ref|YP_002826876.1| proline/glycine betaine ABC transporter, substrate-binding protein
[Sinorhizobium fredii NGR234]
gi|227341905|gb|ACP26123.1| proline/glycine betaine ABC transporter, substrate-binding protein
[Sinorhizobium fredii NGR234]
Length = 318
Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats.
Identities = 142/317 (44%), Positives = 205/317 (64%), Gaps = 11/317 (3%)
Query: 1 MYKILAVCLFLTTFSISYARDAD--------SCTPVRFADTGWTDIAATTAMTSVILEEI 52
M + ++ L A A SC VRF+D GWTDI ATTA + IL+
Sbjct: 1 MTRTFSLKFMLAGAICMAALTAGNAAAAEAESCGTVRFSDVGWTDITATTATATTILKA- 59
Query: 53 LGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKY 112
LGY+T++K+L+VPVT+ SLKNK ID+F+G W P++E IAPY ++ S++ V +NL+GAKY
Sbjct: 60 LGYETDVKVLSVPVTYTSLKNKDIDVFLGNWMPTMEADIAPYRDDKSVETVRQNLEGAKY 119
Query: 113 MLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
LA N G LGIK ++DIA K L KIYGIEPGN+GN+ I+DM+ F LKGF ++
Sbjct: 120 TLATNAKGAELGIKDFKDIAAQKDALEGKIYGIEPGNDGNRLIIDMVEKGTFDLKGFEVV 179
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVV 230
E+SE +Q+ R ++++ P VFL WEPHP+N++ + YL GG++I FG A+V+T V
Sbjct: 180 ESSEQGMLAQVARAEKDDKPIVFLGWEPHPMNANFKLTYLSGGDDIFGPNFGGATVHTNV 239
Query: 231 RSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIG 290
R+ Y +CPN+ LLKN+ FS+ +ENE+M ILN+ +D + L+ +P ++ WL G
Sbjct: 240 RAGYTTECPNVGALLKNLNFSLQMENEIMGKILNDGEDPEKAAAAWLKDNPSAIEPWLAG 299
Query: 291 VTTFDGQDPSRQLERFM 307
VTT DG + ++ +
Sbjct: 300 VTTKDGGEGLAAVKTEL 316
>gi|167905683|ref|ZP_02492888.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei NCTC 13177]
Length = 316
Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats.
Identities = 120/296 (40%), Positives = 187/296 (63%), Gaps = 5/296 (1%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNK 74
S S+A+D+ +C VRFAD GWTDI +TTA+ S++ + LGYK + +VP++F LKN+
Sbjct: 21 SQSFAQDSAACRNVRFADIGWTDITSTTALASLLF-DGLGYKPTTTIASVPISFAGLKNR 79
Query: 75 GIDIFMGYWYPSLEKFIAPYLEEGSIKLV-AENLQGAKYMLAVNDVGFALGIKSYQDIAK 133
+D+ +GYW+P + + P+L+ SI +V NL GAK LAV + G+KS+ DIAK
Sbjct: 80 QLDVSLGYWWPVQQHQLQPFLDSKSISVVEPPNLSGAKATLAVPSYVYQAGLKSFDDIAK 139
Query: 134 YKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPA 193
++ EL K+YGIEPG+ N I MI+ N++ L GF+L+E+SE + R R+
Sbjct: 140 HRAELDGKVYGIEPGSSANATIQKMIDTNQYGLGGFKLVESSEAGMLVTVERAIRDKKWV 199
Query: 194 VFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFS 251
VFL WEPHP+N + + YL GG+ +GEA VYT+ DY+ +CPN +L+ N++F+
Sbjct: 200 VFLGWEPHPMNIQIGMTYLSGGDAAFGPNYGEARVYTLTSPDYMARCPNAGKLVGNLRFT 259
Query: 252 VALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+EN++M+ ++ NK + +R +P +L WL GV T+DG+D ++ ++
Sbjct: 260 TQMENQLMQAVM-NKVKPAEAAKAYIRKNPQVLDAWLAGVKTYDGKDGLAAVKAYL 314
>gi|146305104|ref|YP_001185569.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas mendocina ymp]
gi|145573305|gb|ABP82837.1| Substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas mendocina ymp]
Length = 306
Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats.
Identities = 101/288 (35%), Positives = 161/288 (55%), Gaps = 2/288 (0%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
+ +C V+ D GW+DIA T + S +LE LGY+T + LAVP+ + L+ +D+F
Sbjct: 21 AEDAACATVKLGDPGWSDIAVTNGIASFLLE-GLGYQTQSQTLAVPIIYAGLQKGQLDVF 79
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
+G W P+ + ++ G + +A+NL G +Y LAV F G+K++ D+ K+ + G
Sbjct: 80 LGNWMPAQQSNYDKFVASGEVDQLAQNLDGTEYTLAVPTYAFDAGVKTFADLDKHADKFG 139
Query: 140 AKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWE 199
K+YGI G+ N+ I MI ++F L ++L+E+SE A Q+ R + VFL W
Sbjct: 140 KKLYGIASGSPANESIKQMIAADEFGLGDWQLVESSEQAMLVQVGRAVKREQFVVFLGWT 199
Query: 200 PHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMM 259
PHP+N ++ YL GGE+ G V T+ R Y +CPN +LL N+KF+ +EN +M
Sbjct: 200 PHPMNVQYDMKYLRGGEKYFGD-SGQVNTLARKGYAQQCPNAGKLLSNLKFTQEMENSIM 258
Query: 260 KLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+L+ + + L+ +P +L WL GVTT DG D ++ +
Sbjct: 259 DRVLSKQASNAQAIKDWLQANPQVLDAWLDGVTTRDGGDGLAAVKARL 306
>gi|330500973|ref|YP_004377842.1| glycine betaine ABC transporter substrate-binding protein
[Pseudomonas mendocina NK-01]
gi|328915259|gb|AEB56090.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas mendocina NK-01]
Length = 308
Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats.
Identities = 110/304 (36%), Positives = 168/304 (55%), Gaps = 2/304 (0%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
+L L T+ ++ SC+ V AD GW+DIA T + S++L + LGYK + LA
Sbjct: 7 LLGASLLAFTYGAQAQAESASCSMVTLADPGWSDIAVTNGIASLLL-DGLGYKAQTRTLA 65
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
VP+ F L+ +D+F+G W P+ + Y+ G I V ENL G +Y LAV
Sbjct: 66 VPIIFAGLQKGQVDVFLGNWMPAGQHDYDRYVTSGQIDKVVENLGGTEYTLAVPTYAHEA 125
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
G+K + D+AK+ + G KIYGI + N I MI N+F L ++L+E+SE A Q+
Sbjct: 126 GVKDFNDLAKFADKFGKKIYGIGSDSPANDYIRQMITGNEFGLGDWQLVESSEQAMLVQV 185
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
R + + VFL W PHP+N ++ YL GGE+ G + V T+ R ++ +CPN+ +
Sbjct: 186 GRAVKRDEFVVFLGWTPHPMNVQFDMQYLKGGEKFFGNTGS-VNTLARKGFVAECPNVGK 244
Query: 244 LLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQL 303
LL N+KF+ +EN +M +LN K R ++ +P +L +WL GV T DG D +
Sbjct: 245 LLTNLKFTQEMENTIMDDVLNRKVANATAIRNWIKANPQVLDDWLQGVKTRDGGDGLAAV 304
Query: 304 ERFM 307
+ +
Sbjct: 305 KAKL 308
>gi|313496448|gb|ADR57814.1| Glycine betaine-binding protein [Pseudomonas putida BIRD-1]
Length = 307
Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats.
Identities = 105/309 (33%), Positives = 173/309 (55%), Gaps = 4/309 (1%)
Query: 1 MYKILAVCLFLTTFSISY--ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M+K A L + + A C+ V+ AD GW+DIA+T A+ ++LE LGY+
Sbjct: 1 MHKFSAAVFVLALSTTTAHAADSDAQCSTVKMADPGWSDIASTNAVARLLLES-LGYQVK 59
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
I LAVP+ + LK+ +D F+G W P+ + F ++ G ++ ++ NL+G ++ LAV D
Sbjct: 60 IDSLAVPIIYGGLKDGQVDAFLGNWMPAHQGFHDKFIANGDVQQLSRNLEGTEFTLAVPD 119
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ G+K + D+ K+ + K+YGI G N + +I+ N+F+L ++L+E+SE A
Sbjct: 120 YVWNAGVKDFADLQKHAGQFDKKLYGIGSGAPANLSLKAIIDKNEFNLGQWKLVESSEQA 179
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+Q+ R + FL W PHP+N L +HYL GGE+ G + VYT+ R Y C
Sbjct: 180 MLAQVDRAVKKQQFITFLGWTPHPMNVKLKMHYLTGGEKWFGS-KGEVYTLTRKGYPQAC 238
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN ++LL N+KF++ +EN +M +++ K + ++ HP+ L WL GVTT D
Sbjct: 239 PNAAKLLGNLKFTLDMENSIMAEVVDKKISFDEAAKAWVKAHPERLDGWLAGVTTKADGD 298
Query: 299 PSRQLERFM 307
++ +
Sbjct: 299 ALEAVKAKL 307
>gi|238024051|ref|YP_002908283.1| quaternary amine uptake ABC transporter periplasmic
substrate-binding protein [Burkholderia glumae BGR1]
gi|237878716|gb|ACR31048.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
glumae BGR1]
Length = 314
Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats.
Identities = 125/296 (42%), Positives = 186/296 (62%), Gaps = 5/296 (1%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNK 74
S S+ARDA +C VRFAD GWTDI +TTA+ SV+ E LGY+ + + +VP++F LK+
Sbjct: 19 SPSFARDAAACRAVRFADIGWTDITSTTALASVLFEA-LGYRPSTTIASVPISFAGLKSG 77
Query: 75 GIDIFMGYWYPSLEKFIAPYLEEGSIKLV-AENLQGAKYMLAVNDVGFALGIKSYQDIAK 133
ID+ +GYW+P +K I P+L+ SI ++ NL GAK LAV D + G+K + DIA
Sbjct: 78 QIDVSLGYWWPVQQKQIQPFLDAKSITVLQPPNLSGAKTTLAVPDYAYQAGLKRFNDIAG 137
Query: 134 YKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPA 193
++ ELG +IYGIE G+ N I MI+ N++ L GF+L+E+SE + R R
Sbjct: 138 HRAELGGRIYGIEAGSSANATIQKMIDTNQYGLAGFKLVESSEAGMLVTVARAVREKQWV 197
Query: 194 VFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFS 251
VFL WEPHP+N L +HYL GG+ +GEA VYT+ + + ++CPN RL+ N++F+
Sbjct: 198 VFLGWEPHPMNIQLPMHYLAGGDASFGPNYGEARVYTLTANGFAERCPNAGRLVSNLRFT 257
Query: 252 VALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+EN++M ++N + + +R HP LL WL GVT++DG+D ++ +
Sbjct: 258 TDMENQLMLAVMNRTR-PAEAAKDYIRKHPQLLDGWLAGVTSYDGRDGLATVKAAL 312
>gi|126444696|ref|YP_001061849.1| quaternary amine ABC transporter periplasmic substrate-binding
protein [Burkholderia pseudomallei 668]
gi|126224187|gb|ABN87692.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 668]
Length = 316
Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats.
Identities = 120/296 (40%), Positives = 188/296 (63%), Gaps = 5/296 (1%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNK 74
S S+A+D+ +C VRFAD GWTDI +TTA+ S++ + LGYK + +VP++F LKN+
Sbjct: 21 SQSFAQDSAACRNVRFADIGWTDITSTTALASLLF-DGLGYKPTTTIASVPISFAGLKNR 79
Query: 75 GIDIFMGYWYPSLEKFIAPYLEEGSIKLV-AENLQGAKYMLAVNDVGFALGIKSYQDIAK 133
+D+ +GYW+P + + P+L+ SI +V NL GAK LAV + G+KS+ D+AK
Sbjct: 80 QLDVSLGYWWPVQQHQLQPFLDSKSISVVEPPNLSGAKATLAVPSYVYQAGLKSFDDVAK 139
Query: 134 YKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPA 193
++ EL KIYGIEPG+ N I MI+ N++ L GF+L+E+SE + R R+
Sbjct: 140 HRAELDGKIYGIEPGSSANAMIQKMIDTNQYGLGGFKLVESSEAGMLVTVERAIRDKKWV 199
Query: 194 VFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFS 251
VFL WEPHP+N + ++YL GG+ +GEA VYT+ DY+ +CPN +L+ N++F+
Sbjct: 200 VFLGWEPHPMNIQIGMNYLSGGDAAFGPNYGEARVYTLTSPDYMARCPNAGKLVGNLRFT 259
Query: 252 VALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+EN++M+ ++ NK + +R +P +L WL GV T+DG+D ++ ++
Sbjct: 260 TQMENQLMQAVM-NKVKPAEAAKAYIRKNPQVLDAWLAGVKTYDGKDGLAAVKAYL 314
>gi|148545349|ref|YP_001265451.1| glycine betaine ABC transporter substrate-binding protein
[Pseudomonas putida F1]
gi|148509407|gb|ABQ76267.1| Substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas putida F1]
Length = 307
Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats.
Identities = 105/309 (33%), Positives = 172/309 (55%), Gaps = 4/309 (1%)
Query: 1 MYKILAVCLFLTTFSISY--ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M+K A L + + A C+ V+ AD GW+DIA+T A+ ++LE LGY+
Sbjct: 1 MHKFSAAVFVLALSATTAHAADSDAQCSTVKMADPGWSDIASTNAVARLLLES-LGYQVK 59
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
I LAVP+ + LK+ +D F+G W P+ + F ++ G ++ ++ NL+G ++ LAV D
Sbjct: 60 IDSLAVPIIYGGLKDGQVDAFLGNWMPAQQGFHDKFIANGDVQQLSRNLEGTEFTLAVPD 119
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ G+K + D+ K+ + K+YGI G N + +I N+F+L ++L+E+SE A
Sbjct: 120 YVWNAGVKDFADLQKHAGQFDKKLYGIGSGAPANLSLKKIIEENEFNLGQWKLVESSEQA 179
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+Q+ R + FL W PHP+N L +HYL GGE+ G + VYT+ R Y C
Sbjct: 180 MLAQVDRAVKKQQFITFLGWTPHPMNVKLKMHYLTGGEKWFGS-KGEVYTLTRKGYPQAC 238
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN ++LL N+KF++ +EN +M +++ K + ++ HP+ L WL GVTT D
Sbjct: 239 PNAAKLLGNLKFTLDMENSIMAEVVDKKISFDEAAKAWVKAHPERLDGWLAGVTTKADGD 298
Query: 299 PSRQLERFM 307
++ +
Sbjct: 299 ALEAVKAKL 307
>gi|221209415|ref|ZP_03582396.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia multivorans CGD1]
gi|221170103|gb|EEE02569.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia multivorans CGD1]
Length = 317
Score = 227 bits (577), Expect = 2e-57, Method: Composition-based stats.
Identities = 123/317 (38%), Positives = 186/317 (58%), Gaps = 12/317 (3%)
Query: 1 MYKILAVCLFLTTFSISY-------ARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL 53
M L + DA SC VRFAD GWTDI +TTA+ S + E L
Sbjct: 1 MKSTKIAALAAVMLTTGAFMQAAHADADAASCRNVRFADIGWTDITSTTALASTVFEA-L 59
Query: 54 GYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLV-AENLQGAKY 112
GYK + +VP++F LK+K +++ +GYW+P +K + P+L+ SI ++ NL GAK
Sbjct: 60 GYKPTTTISSVPISFAGLKSKQLEVSLGYWWPVQQKQLQPFLDSKSINVIEPPNLSGAKA 119
Query: 113 MLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
LAV + G+K++ DIAK++ EL KIYGIEPG+ N I MI+ N++ L GF+L+
Sbjct: 120 TLAVPSYEYQAGLKTFDDIAKHRAELDGKIYGIEPGSSANATIQKMIDTNQYGLGGFKLV 179
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVV 230
E+SE + R R VFL WEPHP+N ++++YL GG+ +GEA VYT+
Sbjct: 180 ESSEAGMLVTVERAIREKKWVVFLGWEPHPMNIQISMNYLSGGDAAFGPNYGEARVYTLT 239
Query: 231 RSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIG 290
D+L +CPN +L+ N++F+ LEN++M+ ++ NK + L+ +P +L WL G
Sbjct: 240 APDFLTRCPNAGKLVTNLRFTTQLENQLMQAVM-NKTKPADAAKAYLKKNPQVLDPWLAG 298
Query: 291 VTTFDGQDPSRQLERFM 307
V TFDG+D ++ ++
Sbjct: 299 VKTFDGKDGLPAVKAYL 315
>gi|167818863|ref|ZP_02450543.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 91]
gi|254198628|ref|ZP_04905048.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei S13]
gi|169655367|gb|EDS88060.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei S13]
Length = 316
Score = 227 bits (577), Expect = 2e-57, Method: Composition-based stats.
Identities = 121/296 (40%), Positives = 188/296 (63%), Gaps = 5/296 (1%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNK 74
S S+A+D+ +C VRFAD GWTDI +TTA+ S++ + LGYK + +VP++F LKN+
Sbjct: 21 SQSFAQDSAACRNVRFADIGWTDITSTTALASLLF-DGLGYKPTTTIASVPISFAGLKNR 79
Query: 75 GIDIFMGYWYPSLEKFIAPYLEEGSIKLV-AENLQGAKYMLAVNDVGFALGIKSYQDIAK 133
+D+ +GYW+P + + P+L+ SI +V NL GAK LAV + G+KS+ DIAK
Sbjct: 80 QLDVSLGYWWPVQQHQLQPFLDSKSISVVEPPNLSGAKATLAVPSYVYQAGLKSFDDIAK 139
Query: 134 YKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPA 193
++ EL KIYGIEPG+ N I MI+ N++ L GF+L+E+SE + R R+
Sbjct: 140 HRAELDGKIYGIEPGSSANATIQKMIDTNQYGLGGFKLVESSEAGMLVTVERAIRDKKWV 199
Query: 194 VFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFS 251
VFL WEPHP+N + ++YL GG+ +GEA VYT+ DY+ +CPN +L+ N++F+
Sbjct: 200 VFLGWEPHPMNIQIGMNYLSGGDAAFGPNYGEARVYTLTSPDYMARCPNAGKLVGNLRFT 259
Query: 252 VALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+EN++M+ ++ NK + +R +P +L WL GV T+DG+D ++ ++
Sbjct: 260 TQMENQLMQAVM-NKVKPAEAAKAYIRKNPQVLDVWLAGVKTYDGKDGLAAVKAYL 314
>gi|221200381|ref|ZP_03573423.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia multivorans CGD2M]
gi|221206061|ref|ZP_03579075.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia multivorans CGD2]
gi|221174073|gb|EEE06506.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia multivorans CGD2]
gi|221179722|gb|EEE12127.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia multivorans CGD2M]
Length = 317
Score = 227 bits (577), Expect = 2e-57, Method: Composition-based stats.
Identities = 124/317 (39%), Positives = 186/317 (58%), Gaps = 12/317 (3%)
Query: 1 MYKILAVCLFLTTFSISY-------ARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL 53
M L + DA SC VRFAD GWTDI +TTA+ S + E L
Sbjct: 1 MKSTKIAALAAVMLTTGAFMQAAHADADAASCRNVRFADIGWTDITSTTALASTVFEA-L 59
Query: 54 GYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLV-AENLQGAKY 112
GYK + +VP++F LK+K +D+ +GYW+P +K + P+L+ SI ++ NL GAK
Sbjct: 60 GYKPTTTISSVPISFAGLKSKQLDVSLGYWWPVQQKQLQPFLDSKSINVIEPPNLSGAKA 119
Query: 113 MLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
LAV + G+K++ DIAK++ EL KIYGIEPG+ N I MI+ N++ L GF+L+
Sbjct: 120 TLAVPSYEYQAGLKTFDDIAKHRAELDGKIYGIEPGSSANATIQKMIDTNQYGLGGFKLV 179
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVV 230
E+SE + R R VFL WEPHP+N ++++YL GG+ +GEA VYT+
Sbjct: 180 ESSEAGMLVTVERAIREKKWVVFLGWEPHPMNIQISMNYLSGGDAAFGPNYGEARVYTLT 239
Query: 231 RSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIG 290
D+L +CPN +L+ N++F+ LEN++M+ ++ NK + L+ +P +L WL G
Sbjct: 240 APDFLTRCPNAGKLVTNLRFTTQLENQLMQAVM-NKTKPADAAKAYLKKNPQVLDPWLAG 298
Query: 291 VTTFDGQDPSRQLERFM 307
V TFDG+D ++ ++
Sbjct: 299 VKTFDGKDGLPAVKAYL 315
>gi|91778534|ref|YP_553742.1| ABC proline/glycine betaine transporter, periplasmic ligand binding
protein [Burkholderia xenovorans LB400]
gi|91691194|gb|ABE34392.1| ABC proline/glycine betaine transporter, periplasmic ligand binding
protein [Burkholderia xenovorans LB400]
Length = 316
Score = 227 bits (577), Expect = 2e-57, Method: Composition-based stats.
Identities = 126/314 (40%), Positives = 182/314 (57%), Gaps = 8/314 (2%)
Query: 1 MYKIL-----AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M KI L + + +YA + SC+ V A GWTDI AT AMT V+L+ LGY
Sbjct: 1 MKKIFKQAITGAALLCASATFTYAAEPQSCSQVNMAGPGWTDIDATNAMTGVLLKA-LGY 59
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
K N+ L+VP+T++ LK ID+F+G W P+ + P+ EE SI++V NL AK+ LA
Sbjct: 60 KQNVANLSVPITYQGLKKGQIDVFLGNWMPAQAPLVKPFEEEKSIEVVHPNLTNAKFTLA 119
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
V D A GI S+ D+AK +KIYGIEPG NQ I M+++ F L ++L+E+S
Sbjct: 120 VPDYVAAAGIHSFADLAKNADRFDSKIYGIEPGAPANQNIRKMVDDKAFGLGNWKLVESS 179
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSD 233
E +Q+ R R VFL+WEPH +N+ + YL GG++ +G A+V TV RS
Sbjct: 180 ETGMLTQVERAVREKKWIVFLAWEPHLMNTKFKLTYLDGGDKYFGPNYGGATVNTVARSG 239
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
Y +CPN+ RL + F+V LEN ++ +L K L++HP+LLK+WL GVTT
Sbjct: 240 YAGQCPNLGRLFSQLTFNVDLENGVITEVLEKKTAVDAAATQALKSHPELLKSWLDGVTT 299
Query: 294 FDGQDPSRQLERFM 307
G + + ++ +
Sbjct: 300 ASGANGLQAVQTAL 313
>gi|296156291|ref|ZP_06839130.1| choline ABC transporter, periplasmic binding protein [Burkholderia
sp. Ch1-1]
gi|295893797|gb|EFG73576.1| choline ABC transporter, periplasmic binding protein [Burkholderia
sp. Ch1-1]
Length = 316
Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats.
Identities = 124/314 (39%), Positives = 183/314 (58%), Gaps = 8/314 (2%)
Query: 1 MYKI-----LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M K+ + L + + +YA + SC V A GWTDI AT AMT V+L+ LGY
Sbjct: 1 MKKLFKQAVIGAVLLCASGTFAYAAEPQSCAQVNMAGPGWTDIDATNAMTGVLLKA-LGY 59
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
K N+ L+VP+T++ LK ID+F+G W P+ + P+ EE SI++V NL AK+ LA
Sbjct: 60 KQNVANLSVPITYQGLKKGQIDVFLGNWMPAQAPVVKPFEEEKSIEVVHPNLTNAKFTLA 119
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
V D A GI S+ D+AK + +KIYGIEPG NQ I M+++ F L ++L+E+S
Sbjct: 120 VPDYVAAAGIHSFADLAKNADKFDSKIYGIEPGAPANQNIKKMVDDKAFGLGNWKLVESS 179
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSD 233
E +Q+ R R VFL+WEPH +N+ + YL GG++ +G A+V TV RS
Sbjct: 180 ETGMLTQVERAVREKKWIVFLAWEPHLMNTKFKLTYLDGGDKYFGPNYGGATVNTVARSG 239
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
Y ++CPN+ RL + + F+V LEN ++ +L K L+ HP+LLK+WL GV T
Sbjct: 240 YAEQCPNVGRLFRQLTFNVDLENGVITEVLEKKSTVDAAATQALKRHPELLKSWLDGVNT 299
Query: 294 FDGQDPSRQLERFM 307
G + + ++ +
Sbjct: 300 AGGANGLQAVQTAL 313
>gi|319781843|ref|YP_004141319.1| choline ABC transporter periplasmic binding protein [Mesorhizobium
ciceri biovar biserrulae WSM1271]
gi|317167731|gb|ADV11269.1| choline ABC transporter, periplasmic binding protein [Mesorhizobium
ciceri biovar biserrulae WSM1271]
Length = 311
Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats.
Identities = 133/311 (42%), Positives = 179/311 (57%), Gaps = 5/311 (1%)
Query: 1 MYKILAVCLFLTTFSISYA--RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M +A S S A D SC VR +D GWTDI ATT + SV+L LGY+
Sbjct: 4 MNSFVAGLGLAAFLSTSAAYAGDPASCKAVRLSDVGWTDIQATTGVASVLL-TALGYEPQ 62
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
L+VPVT SLKNK +D+F+G W PS+ I Y +GS++ ++ NL GA Y + V
Sbjct: 63 TIQLSVPVTMASLKNKDLDVFLGNWMPSMTNDIKDYTADGSVETISTNLTGAGYGIVVPT 122
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
G+KS DI K+K + KIYGIE GN+GN+ ILDMI N K +L+GF L+E+SE
Sbjct: 123 YVADAGVKSLTDIGKFKDKFNGKIYGIEAGNDGNRIILDMIKNPKDNLEGFELVESSEAG 182
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+Q + +NN FL W PHP+ + I YL G SGFG A+VYT VR Y +C
Sbjct: 183 MLTQAEQSMKNNEWIAFLGWTPHPVMGAMKITYL-DGMGDSGFGAATVYTNVRKGYTTEC 241
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN + + N+KF++ +E EMM IL D V L+ HPD + W+ GVTTFDG D
Sbjct: 242 PNAGKFIANLKFNLDMEGEMMDAILKGG-DANTVATDWLKKHPDAVAPWIAGVTTFDGGD 300
Query: 299 PSRQLERFMNN 309
+ ++ + +
Sbjct: 301 AAAAIKTALGS 311
>gi|53717093|ref|YP_105262.1| ABC transporter, periplasmic glycine/betaine-binding protein
[Burkholderia mallei ATCC 23344]
gi|52423063|gb|AAU46633.1| ABC transporter, periplasmic glycine/betaine-binding protein
[Burkholderia mallei ATCC 23344]
Length = 316
Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats.
Identities = 120/296 (40%), Positives = 188/296 (63%), Gaps = 5/296 (1%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNK 74
S S+A+D+ +C VRFAD GWTDI +TTA+ S++ + LGYK + +VP++F LK++
Sbjct: 21 SQSFAQDSAACRNVRFADIGWTDITSTTALASLLF-DGLGYKPTTTIASVPISFAGLKSR 79
Query: 75 GIDIFMGYWYPSLEKFIAPYLEEGSIKLV-AENLQGAKYMLAVNDVGFALGIKSYQDIAK 133
+D+ +GYW+P + + P+L+ SI +V NL GAK LAV + G+KS+ DIAK
Sbjct: 80 QLDVSLGYWWPVQQHQLQPFLDSKSISVVEPPNLSGAKATLAVPSYVYQAGLKSFDDIAK 139
Query: 134 YKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPA 193
++ EL KIYGIEPG+ N I MI+ N++ L GF+L+E+SE + R R+
Sbjct: 140 HRAELDGKIYGIEPGSSANATIQKMIDTNQYGLGGFKLVESSEAGMLVTVERAIRDKKWV 199
Query: 194 VFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFS 251
VFL WEPHP+N + ++YL GG+ +GEA VYT+ DY+ +CPN +L+ N++F+
Sbjct: 200 VFLGWEPHPMNIQIGMNYLSGGDAAFGPNYGEARVYTLTSPDYMARCPNAGKLVGNLRFT 259
Query: 252 VALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+EN++M+ ++ NK + +R +P +L WL GV T+DG+D ++ ++
Sbjct: 260 TQMENQLMQAVM-NKVKPAEAAKAYIRKNPQVLDVWLAGVKTYDGKDGLAAVKAYL 314
>gi|26986821|ref|NP_742246.1| glycine betaine-binding protein, putative [Pseudomonas putida
KT2440]
gi|24981418|gb|AAN65710.1|AE016197_8 glycine betaine-binding protein, putative [Pseudomonas putida
KT2440]
Length = 313
Score = 226 bits (575), Expect = 4e-57, Method: Composition-based stats.
Identities = 106/309 (34%), Positives = 174/309 (56%), Gaps = 4/309 (1%)
Query: 1 MYKILAV--CLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M+K A L L+ + A C+ V+ AD GW+DIA+T A+ ++LE LGY+
Sbjct: 7 MHKFSAAVFALALSATTAHAADSDAQCSTVKMADPGWSDIASTNAVARLLLES-LGYQVK 65
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
I LAVP+ + LK+ +D F+G W P+ + F ++ G ++ ++ NL+G ++ LAV D
Sbjct: 66 IDSLAVPIIYGGLKDGQVDAFLGNWMPAQQGFHDKFIANGDVQQLSRNLEGTEFTLAVPD 125
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ G+K + D+ K+ + K+YGI G N + +I+ N+F+L ++L+E+SE A
Sbjct: 126 YVWNAGVKDFADLQKHAGQFDKKLYGIGSGAPANLSLKAIIDKNEFNLGQWKLVESSEQA 185
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+Q+ R + FL W PHP+N L +HYL GGE+ G + VYT+ R Y C
Sbjct: 186 MLAQVDRAVKKQQFITFLGWTPHPMNVKLKMHYLTGGEKWFGS-KGEVYTLTRKGYPQAC 244
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN ++LL N+KF++ +EN +M +++ K + ++ HP+ L WL GVTT D
Sbjct: 245 PNAAKLLGNLKFTLDMENSIMAEVVDKKISFDEAAKAWVKAHPERLDGWLAGVTTKADGD 304
Query: 299 PSRQLERFM 307
++ +
Sbjct: 305 ALEAVKAKL 313
>gi|241205791|ref|YP_002976887.1| choline ABC transporter periplasmic-binding protein [Rhizobium
leguminosarum bv. trifolii WSM1325]
gi|240859681|gb|ACS57348.1| choline ABC transporter, periplasmic binding protein [Rhizobium
leguminosarum bv. trifolii WSM1325]
Length = 318
Score = 226 bits (575), Expect = 4e-57, Method: Composition-based stats.
Identities = 137/311 (44%), Positives = 207/311 (66%), Gaps = 6/311 (1%)
Query: 2 YKILAVCLF--LTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K++ L+ + ++A D DSC+ V F+D GWTDI ATTA S++L+ +GY+T++
Sbjct: 7 FKLVTATAVAALSVATAAFAADPDSCSTVHFSDVGWTDITATTATASIVLKS-IGYQTDV 65
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
K+L+VPVT+ SLKNK ID+F+G W + EK + PYL++ S++ NL GAKY LA N
Sbjct: 66 KVLSVPVTYTSLKNKDIDVFLGNWMETQEKDVRPYLDDKSVESFGPNLVGAKYTLATNAK 125
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
G LGIK ++DIA +K +L KIYGIEPGN+GN+ ++DMI N+F LK ++E+SE
Sbjct: 126 GAELGIKDFKDIAAHKDDLDGKIYGIEPGNDGNRLVMDMIEKNEFDLKDMEVVESSEQGM 185
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDK 237
+Q+ R ++ P VFL WEPHP+N++ + YL GG+++ FG A V+T VR+ YLD+
Sbjct: 186 LAQVARADKSGKPVVFLGWEPHPMNTNFKLTYLTGGDKVFGPDFGGAKVFTNVRAGYLDE 245
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDG- 296
CPN+ +LKN+KFS+ +EN++M ILN+ ++ + L+ +P L+ WL GV T DG
Sbjct: 246 CPNVGMMLKNLKFSLDMENQIMGKILNDGKEPEAAASEWLKANPAALEPWLAGVKTRDGS 305
Query: 297 QDPSRQLERFM 307
+ + +
Sbjct: 306 GEALAAAKTGL 316
>gi|78061382|ref|YP_371290.1| ABC proline/glycine betaine transporter, periplasmic ligand binding
protein [Burkholderia sp. 383]
gi|77969267|gb|ABB10646.1| ABC proline/glycine betaine transporter, periplasmic ligand binding
protein [Burkholderia sp. 383]
Length = 314
Score = 226 bits (575), Expect = 4e-57, Method: Composition-based stats.
Identities = 128/305 (41%), Positives = 193/305 (63%), Gaps = 5/305 (1%)
Query: 7 VCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPV 66
+ L + A++A +C VRFAD GWTDIAATTA+ S +L LGY+ + ++P+
Sbjct: 10 IALAAVCTGQAAAQEAATCRAVRFADIGWTDIAATTALASTVL-SSLGYQPTKTMASIPI 68
Query: 67 TFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAVNDVGFALGI 125
LK + ID+++G W PS++ AP+++ G++K++ NL GAKY LAV + G+
Sbjct: 69 ALAGLKARQIDVYLGDWRPSMDATSAPFVKSGAVKVLDRPNLVGAKYTLAVPAYAYDAGL 128
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
+S+ DIAK+ L +IYGIEPGN+GN+ I I N+F L F+L+E+SE ++RR
Sbjct: 129 RSFDDIAKFADRLQYRIYGIEPGNDGNELIHKAIAGNQFGLGKFKLVESSEAGMLVEVRR 188
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISR 243
R++ VFL WEPHP+N D N+ YL GG+ + +GEA VYT+ DY +CPN++R
Sbjct: 189 AIRDHAWVVFLGWEPHPMNLDFNMRYLAGGDNLFGPNYGEAKVYTMTSPDYAARCPNVAR 248
Query: 244 LLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQL 303
L+ N++F+ +EN++MK I + + + L+ HPD+LK WL GV T DG+DP L
Sbjct: 249 LVANLQFTTDMENQVMKAIA-GGKQPEVAAKAWLQQHPDVLKGWLAGVRTVDGRDPQAAL 307
Query: 304 ERFMN 308
+ +N
Sbjct: 308 QAALN 312
>gi|327189485|gb|EGE56641.1| proline/glycine betaine ABC transporter, substrate-binding protein
[Rhizobium etli CNPAF512]
Length = 318
Score = 226 bits (575), Expect = 4e-57, Method: Composition-based stats.
Identities = 135/311 (43%), Positives = 206/311 (66%), Gaps = 6/311 (1%)
Query: 2 YKILAVCLF--LTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K++ L+ + ++A D DSC+ V F+D GWTDI ATTA SV+L+ +GY+T++
Sbjct: 7 FKLVTATAVAALSIATAAFAADPDSCSTVHFSDVGWTDITATTATASVVLKS-IGYQTDV 65
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
K+L+VPVT+ SLKNK IDIF+G W P+ EK + PY+++ S++ NL GAKY LA N
Sbjct: 66 KVLSVPVTYTSLKNKDIDIFLGNWMPTQEKDVRPYIDDKSVESFGPNLVGAKYTLATNAK 125
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
G LGIK ++DIA +K +L KIYGIEPGN+GN+ ++D+I N F +K ++E+SE
Sbjct: 126 GAELGIKDFKDIAAHKDDLDGKIYGIEPGNDGNRLVMDLIEKNTFGMKDMEVVESSEQGM 185
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDK 237
+Q+ R ++ P VFL WEPHP+N++ + YL GG+++ FG A VYT VR+ YL++
Sbjct: 186 LAQVARAEKAGKPVVFLGWEPHPMNTNFKLTYLTGGDDVFGPDFGGAKVYTNVRAGYLNE 245
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQ 297
C N+ +LKN+ FS+ +EN++M IL++ ++ + L+ +P L+ WL GV T DG+
Sbjct: 246 CRNVGAMLKNLTFSLDMENQIMGKILDDGKEPEAAATEWLKANPAALEPWLAGVKTRDGK 305
Query: 298 -DPSRQLERFM 307
D + +
Sbjct: 306 GDALAAAKTGL 316
>gi|104784093|ref|YP_610591.1| substrate-binding region of ABC-type glycine transport system
[Pseudomonas entomophila L48]
gi|95113080|emb|CAK17808.1| putative substrate-binding region of ABC-type glycine transport
system [Pseudomonas entomophila L48]
Length = 314
Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats.
Identities = 112/306 (36%), Positives = 178/306 (58%), Gaps = 5/306 (1%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+L++ L T S +A + +C VR WTD+ AT+AM V+L + LGY+T
Sbjct: 7 RSLLSLALSTTFVSPLFAAEPAACKDVRLGVVNWTDVIATSAMAQVLL-DGLGYQTKQTS 65
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAVNDVG 120
+ + F +++K +D+F+GYW P + + I P+++ +K++ +L+ A+ LAV
Sbjct: 66 ASQQIIFAGIRDKRLDMFLGYWNPIMTQTITPFIQANQVKVLDKPSLEDARATLAVPKYL 125
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
G+K++ DI K++KELG K+YGIEPG+ N +I MI N+F L F+L+E+SE
Sbjct: 126 ADKGLKTFADIHKFEKELGGKLYGIEPGSGANTQIKAMIAKNQFDLGKFQLVESSEAGML 185
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKC 238
+ + R R VF W PHP+N ++++ YL ++ G A+V+TV DY ++C
Sbjct: 186 AAVDRAVRRKEAVVFFGWAPHPMNVNIDMVYLGDSQDALGPDEGRATVWTVTAPDYAERC 245
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN SRLL N+ FS E+ MM+ +L + +D R L+ HP+ WL GVTTFDG+
Sbjct: 246 PNASRLLANLSFSAEDESRMMQPLL-DHKDALESARQWLKDHPEDKARWLEGVTTFDGKP 304
Query: 299 PSRQLE 304
+ L+
Sbjct: 305 AADNLK 310
>gi|148259996|ref|YP_001234123.1| substrate-binding region of ABC-type glycine betaine transport
system [Acidiphilium cryptum JF-5]
gi|326403048|ref|YP_004283129.1| putative ABC transporter substrate-binding protein [Acidiphilium
multivorum AIU301]
gi|146401677|gb|ABQ30204.1| Substrate-binding region of ABC-type glycine betaine transport
system [Acidiphilium cryptum JF-5]
gi|325049909|dbj|BAJ80247.1| putative ABC transporter substrate-binding protein [Acidiphilium
multivorum AIU301]
Length = 314
Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats.
Identities = 115/314 (36%), Positives = 168/314 (53%), Gaps = 6/314 (1%)
Query: 1 MYKILAVCLFLT---TFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M K + + I++A SC +R A+ GWTD A+ S + + LGYKT
Sbjct: 1 MKKYTIGAALASITMSLGIAHAAVPASCKTIRMANIGWTDNVVQNAVFSTVA-QALGYKT 59
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+I L ++ V + L N ID+F+ W PS PY ++ I ++ +L+ AKY L V
Sbjct: 60 DINLYSLEVMYAGLSNGKIDVFLDNWTPSQNPTTTPYEKKHEIDVIGPDLKHAKYTLVVP 119
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
+ G+K++ DI K+ KEL KIYGIEPGN+GN IL MI NKF L F L+++SE
Sbjct: 120 HYLYEKGLKTFADIHKFAKELNYKIYGIEPGNDGNLHILAMIKANKFDLGKFHLVQSSEA 179
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISG--FGEASVYTVVRSDYL 235
+++ R VFL WEP P+N + +I+YL GG + G GEA++Y R +Y
Sbjct: 180 GMLAEVARKYPKKKDIVFLGWEPEPMNVEFHINYLTGGRDYFGPHKGEATLYINTRHNYA 239
Query: 236 DKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFD 295
CPN+ LL + SV EN+MM + Q+ V L+ HP +K L GVTT D
Sbjct: 240 KDCPNVGVLLHHFYLSVGDENKMMYDVQVKHQEAPAVAAAWLKAHPAWVKKTLDGVTTVD 299
Query: 296 GQDPSRQLERFMNN 309
G+ + + + +
Sbjct: 300 GKPGAAAVLASLKS 313
>gi|326797141|ref|YP_004314961.1| choline ABC transporter periplasmic binding protein [Marinomonas
mediterranea MMB-1]
gi|326547905|gb|ADZ93125.1| choline ABC transporter, periplasmic binding protein [Marinomonas
mediterranea MMB-1]
Length = 313
Score = 225 bits (574), Expect = 5e-57, Method: Composition-based stats.
Identities = 107/308 (34%), Positives = 178/308 (57%), Gaps = 6/308 (1%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
++L + + A +++ C V D GW+DI AT A+ + +LE LGYKT+IKL
Sbjct: 8 KRVLPAIVVSAVSVSAMAVESEQCKTVTLTDPGWSDIGATNALATTVLEA-LGYKTDIKL 66
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
L VP+ F S+KN ID+F+G W P+ FI Y +G I +V NL G K+ LAV +
Sbjct: 67 LGVPIGFESVKNGEIDVFLGNWMPAQTAFIEKY--KGEIDVVKTNLTGVKFTLAVPSYVY 124
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
G+K + D+ K+ ++ +IYGI G+ NQ ++ MI N F L + ++E+ E A S
Sbjct: 125 DAGVKDFSDLNKFPRKFNRRIYGIGAGSPANQNLMKMIEKNDFDLGKWNVVESGEQAMLS 184
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCP 239
Q+ R + + VFL+WEPHP+N + ++ YL GG+E +G A+++TV R Y+D+C
Sbjct: 185 QVARSVKRDKFIVFLAWEPHPMNVNFDLKYLSGGDEYFGPNYGGATIHTVTRKGYMDECA 244
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDP 299
N + +N++FS+ +EN ++ + + + ++ L+ +P +L +WL G+ T G+
Sbjct: 245 NTGKFFENLEFSLTMENTVIS-MTDEGMSAKEAAQSWLKKNPAVLSSWLDGIKTVSGEPA 303
Query: 300 SRQLERFM 307
+E +
Sbjct: 304 LPAVESTL 311
>gi|330890224|gb|EGH22885.1| glycine betaine family ABC transporter substrate-binding protein
[Pseudomonas syringae pv. mori str. 301020]
Length = 308
Score = 225 bits (574), Expect = 5e-57, Method: Composition-based stats.
Identities = 102/309 (33%), Positives = 165/309 (53%), Gaps = 3/309 (0%)
Query: 1 MYKILAVCLFLTTFSISYARDA--DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K+ S A A SC+ V+ AD GW+DI AT A+ SV+LE LGYK
Sbjct: 1 MKKLSTAVAVAVMTFGSLAAQAEDASCSTVKMADPGWSDIGATNAIASVVLE-GLGYKAK 59
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ LAVP+ + LK+ +D+F+G W P+ + F ++ G + +A NL+G ++ LAV D
Sbjct: 60 VDTLAVPIAYGGLKDGKLDVFLGNWMPAQQGFYDKFVATGDVTQLARNLEGTEFTLAVPD 119
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ G+ + D+ K+ + KIYGI G N + ++I N+F L ++L+E+SE A
Sbjct: 120 YVWDAGVHDFADLNKFADKFDQKIYGIGAGAPANLSLQEIIKKNEFDLGKWKLVESSETA 179
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+++ R+ + VFL W PHP+N + + G E SV+T+ R Y C
Sbjct: 180 MLAEVNRNVKKKAFVVFLGWTPHPMNVQIKGMHYLKGGEKYFGDTGSVFTLTRKGYAQAC 239
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN+ +LL N+ F++ +EN +M + N K + ++ +P +L WL GV T G+D
Sbjct: 240 PNVGKLLTNLNFTLDMENSIMAEVANKKVSNSAAAKAWIKANPAVLDKWLEGVQTAYGKD 299
Query: 299 PSRQLERFM 307
++ +
Sbjct: 300 GLAAVKARL 308
>gi|254254467|ref|ZP_04947784.1| ABC-type proline/glycine betaine transport systems periplasmic
component [Burkholderia dolosa AUO158]
gi|124899112|gb|EAY70955.1| ABC-type proline/glycine betaine transport systems periplasmic
component [Burkholderia dolosa AUO158]
Length = 317
Score = 225 bits (574), Expect = 5e-57, Method: Composition-based stats.
Identities = 124/300 (41%), Positives = 186/300 (62%), Gaps = 6/300 (2%)
Query: 12 TTFSISYA-RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRS 70
+ A DA SC VRFAD GWTDI +TTA+ S + E LGY+ + +VP++F
Sbjct: 18 AFAGAAQAESDAASCRNVRFADIGWTDITSTTALASTVFEA-LGYRPTTTIASVPISFAG 76
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLV-AENLQGAKYMLAVNDVGFALGIKSYQ 129
LK+K +D+ +GYW+P +K + P+L+ SI +V NL GAK LAV + G+K++
Sbjct: 77 LKSKQLDVSLGYWWPVQQKQLQPFLDSKSINVVEPPNLSGAKATLAVPSYAYQAGLKTFD 136
Query: 130 DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRN 189
DIAK++ EL KIYGIEPG+ N I MI+ N++ L GF+L+E+SE + R R+
Sbjct: 137 DIAKHRAELDGKIYGIEPGSSANATIQKMIDTNQYGLGGFKLVESSEAGMLVTVERAIRD 196
Query: 190 NIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKN 247
VFL WEPHP+N L+++YL GG+ +GEA VYT+ D+L +CPN +L+ N
Sbjct: 197 KKWVVFLGWEPHPMNIQLSMNYLSGGDAAFGPNYGEARVYTLTAPDFLARCPNAGKLITN 256
Query: 248 IKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
++F+ LEN++M+ ++ NK + L+ +P +L WL GV TFDG+D ++ ++
Sbjct: 257 LRFTTQLENQLMQAVM-NKTKPSDAAKAYLKKNPQVLDPWLAGVKTFDGKDGLPAVKAYL 315
>gi|330501451|ref|YP_004378320.1| glycine betaine ABC transporter substrate-binding protein
[Pseudomonas mendocina NK-01]
gi|328915737|gb|AEB56568.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas mendocina NK-01]
Length = 310
Score = 225 bits (573), Expect = 7e-57, Method: Composition-based stats.
Identities = 122/310 (39%), Positives = 180/310 (58%), Gaps = 7/310 (2%)
Query: 1 MYKI--LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M + LA C L+ FS S D SC VR GWTD+ ATTA+ S +L + LGY+T
Sbjct: 1 MKGLTALAACCTLSLFSTSLLADDASCKNVRIGAVGWTDVVATTAVASELL-QGLGYETK 59
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAVN 117
+ + F ++ ID F+GYW P ++ I P+L+ G++ + A +L A +LAV
Sbjct: 60 QTQASQQIIFAGIQKGQIDAFLGYWKPIMDDNIKPFLDAGAVTVAAEPSLDDAVAVLAVP 119
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
G+K+ DIAK+K +L KIYGIE G+ N I MI++N+F L GF+L+E+SE
Sbjct: 120 SYTADKGLKTLADIAKFKDQLDGKIYGIEAGSGANTAIQKMIDSNQFGLGGFKLVESSEA 179
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYL 235
+ + R RN P VF W+PHP+N + I YL G E++ G A+V TV DY
Sbjct: 180 GMLAAVGRAVRNEKPVVFFGWKPHPMNLSMQITYLTGTEDVFGPNDGAATVSTVTAPDYA 239
Query: 236 DKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFD 295
++CPN +RLL +++F+ E E+M+ I++ KQ V R ++ +P +++ WL GVTT D
Sbjct: 240 ERCPNANRLLTSLRFTSQQEAELMQPIMDRKQ-PAQVARDWIKANPQVVEAWLDGVTTLD 298
Query: 296 GQDPSRQLER 305
G+ S L
Sbjct: 299 GKPASVSLVA 308
>gi|325273156|ref|ZP_08139451.1| glycine betaine ABC transporter substrate-binding protein
[Pseudomonas sp. TJI-51]
gi|324101705|gb|EGB99256.1| glycine betaine ABC transporter substrate-binding protein
[Pseudomonas sp. TJI-51]
Length = 314
Score = 225 bits (573), Expect = 7e-57, Method: Composition-based stats.
Identities = 113/306 (36%), Positives = 178/306 (58%), Gaps = 5/306 (1%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+L + L S A + +C VR WTD+ AT+AM V+L + LGY+T
Sbjct: 7 RSLLTLALSSIATSPLLAAEPAACKKVRLGVVNWTDVIATSAMAQVLL-DGLGYQTKQTS 65
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAVNDVG 120
+ + F +++K +D+F+GYW P + + I P+++ G +K++ +L+ A+ LAV
Sbjct: 66 ASQQIIFAGIRDKRLDMFLGYWNPIMTQTITPFVDAGQVKVLDKPSLEDARATLAVPKYL 125
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ G+K++ DI K++KELG KIYGIEPG+ N +I MI N+F L F+L+E+SE
Sbjct: 126 YDKGLKTFADIHKFEKELGGKIYGIEPGSGANTQIKAMITKNQFGLGKFQLVESSEAGML 185
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKC 238
+ + R R VF W PHP+N ++++ YL ++ G A+V+TV DY ++C
Sbjct: 186 AAVDRAVRRKEAVVFFGWAPHPMNVNIDMAYLGDSQDALGPDEGRATVWTVTAPDYAERC 245
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN +RLL N+KFS E+ MM+ +L + +D R L+ HP+ WL GVTTFDG+
Sbjct: 246 PNANRLLANLKFSAEDESRMMQPLL-DHKDALESARQWLKDHPEDKARWLEGVTTFDGKP 304
Query: 299 PSRQLE 304
+ L+
Sbjct: 305 AADNLK 310
>gi|167031339|ref|YP_001666570.1| choline ABC transporter periplasmic binding protein [Pseudomonas
putida GB-1]
gi|166857827|gb|ABY96234.1| choline ABC transporter, periplasmic binding protein [Pseudomonas
putida GB-1]
Length = 315
Score = 225 bits (572), Expect = 8e-57, Method: Composition-based stats.
Identities = 125/308 (40%), Positives = 187/308 (60%), Gaps = 6/308 (1%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
L + L+T ++ A + + C VRF+D GWTDI TTA TSV+LE LGYKT+ +++V
Sbjct: 7 LLLVALLSTPLLAQAAEPEQCQTVRFSDVGWTDITVTTATTSVVLEA-LGYKTHTTMISV 65
Query: 65 PVTFRSLKNK-GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
PVT++SL +D+F+G W P++E I Y + G+++ V NL+ AKY LAV +
Sbjct: 66 PVTYKSLATGKDLDVFLGNWMPTMENDIKQYRDAGTVETVRANLENAKYTLAVPQALYDK 125
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN--NNKFSLKGFRLIEASELASFS 181
G+K + DI K+KKEL +KIYGIEPGN+GN+ I MI+ GF+++++SE S
Sbjct: 126 GLKDFSDIPKFKKELDSKIYGIEPGNDGNRTIQSMIDKNAFGLKDAGFKIVQSSEAGMLS 185
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCP 239
Q+ R Q+ VFL WEPHP+N+ + YL GG+E FG+A+V T R Y +C
Sbjct: 186 QVDRAQKRGEALVFLGWEPHPMNTRFKMQYLTGGDEFFGPDFGKATVLTNTRKGYAQECS 245
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDP 299
N+ +LLKN+ F + E+ MM +L++K + + ++ +P L WL GVTT DG+
Sbjct: 246 NVGQLLKNLSFELKDESTMMGYVLDDKMKPEAAAKKWIKDNPGKLDAWLAGVTTVDGKPG 305
Query: 300 SRQLERFM 307
+ +
Sbjct: 306 LEAAKAKL 313
>gi|217425340|ref|ZP_03456834.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
pseudomallei 576]
gi|217391591|gb|EEC31619.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
pseudomallei 576]
Length = 362
Score = 225 bits (572), Expect = 9e-57, Method: Composition-based stats.
Identities = 128/291 (43%), Positives = 186/291 (63%), Gaps = 5/291 (1%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
DA +C VRFAD GWTDIAATT + S +L LGY + +VP+TF +K+K ID+F
Sbjct: 71 GDAPTCKAVRFADVGWTDIAATTGLASTML-AGLGYAPTKTIASVPITFAGIKSKQIDVF 129
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL 138
+GYW P+++ IAP+ + G+IK++A NL GAKY LAV D + G+KS+ DI KY +L
Sbjct: 130 LGYWSPTMDPMIAPFTKAGTIKVLAAPNLTGAKYTLAVPDYVYQGGLKSFADIQKYADKL 189
Query: 139 GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
+IYGIEPGN+GN I MI+ N+F L F+L+E+SE ++ R R+ VFL W
Sbjct: 190 NGRIYGIEPGNDGNALIKKMIDGNQFGLGKFKLVESSEAGMLVEVNRAIRDKQWIVFLGW 249
Query: 199 EPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALEN 256
EPHP+N + I YL GG+++ +GEA V T DY +CPN+++ + N++F+ ++EN
Sbjct: 250 EPHPMNVQMKIDYLSGGDDVFGPNYGEAKVLTATPPDYAVRCPNVAKFVSNLQFTTSIEN 309
Query: 257 EMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+M I+ NK+D L+ +P L WL GVTTFDG+ ++ ++
Sbjct: 310 HVMLPIM-NKEDPNKAAAEWLKANPQSLDKWLAGVTTFDGKPGLPAVKHYL 359
>gi|167584647|ref|ZP_02377035.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia ubonensis Bu]
Length = 317
Score = 225 bits (572), Expect = 9e-57, Method: Composition-based stats.
Identities = 122/298 (40%), Positives = 185/298 (62%), Gaps = 5/298 (1%)
Query: 13 TFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLK 72
+ + D +C VRFAD GWTDI +TTAM S + E LGYK + +VP++F LK
Sbjct: 20 STAAQADADPATCRTVRFADIGWTDITSTTAMASTVFEA-LGYKPTTTIASVPISFAGLK 78
Query: 73 NKGIDIFMGYWYPSLEKFIAPYLEEGSIKLV-AENLQGAKYMLAVNDVGFALGIKSYQDI 131
+K +D+ +GYW+P +K + P+L+ SI +V NL GAK LAV + G+K++ DI
Sbjct: 79 SKQLDVSLGYWWPVQQKQLQPFLDSKSINVVEPPNLSGAKATLAVPSYAYQAGLKTFDDI 138
Query: 132 AKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI 191
AK++ EL KIYGIEPG+ N I MI+ N++ L GF+L+E+SE + R R+
Sbjct: 139 AKHRAELDGKIYGIEPGSSANATIQKMIDTNQYGLGGFKLVESSEAGMLVTVERAIRDKK 198
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
VFL WEPHP+N ++++YL GG+ +GEA VYT+ D++ +CPN +L+ N++
Sbjct: 199 WVVFLGWEPHPMNIQISMNYLSGGDAAFGPNYGEARVYTLTAPDFIARCPNAGKLVTNLR 258
Query: 250 FSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
FS LEN++M+ ++ NK + L+ +P +L WL GV TFDG+D ++ ++
Sbjct: 259 FSTQLENQLMQAVM-NKTKPAEAAKAYLKKNPQVLDPWLAGVKTFDGKDGLPAVKAYL 315
>gi|330819989|ref|YP_004348851.1| ABC transporter, quaternary amine uptake transporter family,
periplasmic substrate-binding protein [Burkholderia
gladioli BSR3]
gi|327371984|gb|AEA63339.1| ABC transporter, quaternary amine uptake transporter family,
periplasmic substrate-binding protein [Burkholderia
gladioli BSR3]
Length = 316
Score = 225 bits (572), Expect = 9e-57, Method: Composition-based stats.
Identities = 119/293 (40%), Positives = 183/293 (62%), Gaps = 5/293 (1%)
Query: 18 YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGID 77
+A+DA +C VRF+D GWTDI +TTA+ S++ + LGYK + +VP++F LK K ID
Sbjct: 24 FAQDAAACRTVRFSDIGWTDITSTTALASMLF-DSLGYKPTTTISSVPISFAGLKAKQID 82
Query: 78 IFMGYWYPSLEKFIAPYLEEGSIKLV-AENLQGAKYMLAVNDVGFALGIKSYQDIAKYKK 136
+ +GYW+P +K + P+L+ SI ++ NL GAK LAV + G+K++ DIAK++
Sbjct: 83 VSLGYWWPVQQKQLQPFLDSKSITVLEPPNLSGAKATLAVPAYEYQAGLKTFDDIAKHRA 142
Query: 137 ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFL 196
EL KIYGIEPG+ N I MI+ N++ L GF+L+E+SE + R R+ VFL
Sbjct: 143 ELDGKIYGIEPGSSANATIQKMIDTNQYGLGGFKLVESSEAGMLVTVERAVRDKKWVVFL 202
Query: 197 SWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVAL 254
WEPHP+N L ++YL GG+ +GEA VYT+ + + ++CPN +L+ N++F+ +
Sbjct: 203 GWEPHPMNIQLQMNYLSGGDASFGPNYGEARVYTLTANGFAERCPNAGKLVSNLRFTTEM 262
Query: 255 ENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
EN++M + NK + +R HP +L WL GV +FDG+D ++ +
Sbjct: 263 ENQLMLAV-VNKTRPADAAKDYIRKHPQVLDGWLSGVKSFDGKDGVATVKAAL 314
>gi|167031346|ref|YP_001666577.1| choline ABC transporter periplasmic binding protein [Pseudomonas
putida GB-1]
gi|166857834|gb|ABY96241.1| choline ABC transporter, periplasmic binding protein [Pseudomonas
putida GB-1]
Length = 314
Score = 225 bits (572), Expect = 9e-57, Method: Composition-based stats.
Identities = 112/306 (36%), Positives = 176/306 (57%), Gaps = 5/306 (1%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+L + L S +A + +C VR WTD+ AT+AM V+L + LGY+T
Sbjct: 7 RSLLTLALSSIATSPLFAAEPAACKNVRLGVVNWTDVIATSAMAQVLL-DGLGYQTKQTS 65
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAVNDVG 120
+ + F +++K +D+F+GYW P + + I P+++ +K++ +L+ A+ LAV
Sbjct: 66 ASQQIIFAGIRDKRLDMFLGYWNPIMTQTITPFVDANQVKVLDKPSLEDARATLAVPKYL 125
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ G+K++ DI K++KELG KIYGIEPG+ N +I MI N+F L F+L+E+SE
Sbjct: 126 YDKGLKTFADIHKFEKELGGKIYGIEPGSGANTQIKAMITKNQFDLGQFQLVESSEAGML 185
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKC 238
+ + R R VF W PHP+N ++++ YL ++ G A+V+TV DY ++C
Sbjct: 186 AAVDRAVRRKEAVVFFGWAPHPMNVNIDMAYLGDSQDALGPDEGRATVWTVTAPDYAERC 245
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN RLL N+ FS E+ MM+ +L + +D R L+ HPD WL GVTTFDG+
Sbjct: 246 PNAHRLLANLNFSAEDESRMMQPLL-DHKDALESARQWLKDHPDDKARWLEGVTTFDGKP 304
Query: 299 PSRQLE 304
+ L+
Sbjct: 305 AADNLK 310
>gi|149201738|ref|ZP_01878712.1| Substrate-binding region of ABC-type glycine betaine transport
system [Roseovarius sp. TM1035]
gi|149144786|gb|EDM32815.1| Substrate-binding region of ABC-type glycine betaine transport
system [Roseovarius sp. TM1035]
Length = 309
Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats.
Identities = 136/287 (47%), Positives = 190/287 (66%), Gaps = 3/287 (1%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGY 82
+C V FAD GWTDI ATTA TS++LE LGY+T K+L+VPVT+ SL ID+F+G
Sbjct: 22 ANCDSVTFADVGWTDITATTAATSLVLEA-LGYETEAKVLSVPVTYTSLAKGDIDVFLGN 80
Query: 83 WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKI 142
W P++E IAPY E G++ V NL GAKY LA N G ALGI S++ IA++ + + I
Sbjct: 81 WMPTMEADIAPYREAGTVDTVRANLVGAKYTLATNAAGAALGINSFETIAQHADAIESTI 140
Query: 143 YGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP 202
YGIEPGN+GN+ ILDMI + F LKGF + E+SE +Q+ R R P VFL WEPHP
Sbjct: 141 YGIEPGNDGNRLILDMIEADAFGLKGFEVKESSEQGMLAQVSRADRREEPIVFLGWEPHP 200
Query: 203 INSDLNIHYLPGGEEISGF--GEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMK 260
+N++ + YL GG++ G G A++YT R+ Y+ +CPN+ +LL+N++FS+A+ENE+M
Sbjct: 201 MNANHELTYLTGGDDWFGPDLGGATIYTNTRAGYVAECPNVGKLLENLEFSLAMENEIMG 260
Query: 261 LILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
ILN+ + + L+ +PD + WL GVTT DG D ++ +
Sbjct: 261 AILNDGAKPEDAASSWLKANPDAIGPWLDGVTTKDGGDAMAAVKAAL 307
>gi|70733037|ref|YP_262810.1| glycine betaine/L-proline ABC transporter periplasmic
substrate-binding protein [Pseudomonas fluorescens Pf-5]
gi|68347336|gb|AAY94942.1| glycine betaine/L-proline ABC transporter, periplasmic
substrate-binding protein [Pseudomonas fluorescens Pf-5]
Length = 314
Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats.
Identities = 117/312 (37%), Positives = 184/312 (58%), Gaps = 10/312 (3%)
Query: 1 MYKILAVCLFLT-----TFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M ++++ C+ S + A DA SC VR WTD+ AT+A+T V+L + LGY
Sbjct: 1 MKRLISSCVLALSGSVFLSSGALAADAASCQNVRLGVVNWTDVIATSALTQVLL-DGLGY 59
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYML 114
KT + + F ++++ +D+F+GYW P + + I P+++ +K++A +L+ A+ L
Sbjct: 60 KTKQTSASQQIIFAGIRDQRLDLFLGYWNPLMTQTITPFVDANQVKVLAEPSLKDARATL 119
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
AV G+K++ DIA+++KELG KIYGIEPG+ N +I +MI N+F L F+L+E+
Sbjct: 120 AVPAYLADKGLKTFADIARFQKELGGKIYGIEPGSGANTQIKEMIAKNQFGLGKFQLVES 179
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRS 232
SE S + R + N VF W PHP+N + + YL G E G+A+V+TV
Sbjct: 180 SEAGMLSAVARAVKRNEAIVFFGWAPHPMNVNFKMTYLSGSENALGPNEGQATVWTVTAP 239
Query: 233 DYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVT 292
+Y ++CPN+ RLL N+ FS E+ MM+ +L + +D R L+ HP + WL GVT
Sbjct: 240 NYAEQCPNVHRLLTNLTFSAEDESRMMQPLL-DHKDALESARQWLKDHPQDQQRWLEGVT 298
Query: 293 TFDGQDPSRQLE 304
TFDG+ + L+
Sbjct: 299 TFDGKPAAEHLQ 310
>gi|89070894|ref|ZP_01158129.1| putative glycine betaine-binding abc transporter protein
[Oceanicola granulosus HTCC2516]
gi|89043533|gb|EAR49744.1| putative glycine betaine-binding abc transporter protein
[Oceanicola granulosus HTCC2516]
Length = 308
Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats.
Identities = 127/308 (41%), Positives = 194/308 (62%), Gaps = 5/308 (1%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M L + + + + A D C V F+D GWTDI ATTA T+ +LE +GY T ++
Sbjct: 1 MK--LLSTISVLALAATSAAAQDQCDTVTFSDVGWTDITATTAATTAVLEA-IGYDTEVR 57
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+L+VPVT+ SL +D+F+G W P++E IAPY E+G++ V NL+GAKY LA N G
Sbjct: 58 VLSVPVTYISLAEGDVDVFLGNWMPTMEADIAPYREDGTVDTVRTNLEGAKYTLATNAAG 117
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
GI + DIA++ L +IYGIEPGN+GN+ I+DMI + F L F ++E+SE
Sbjct: 118 AEAGIADFADIAEHGDALEGQIYGIEPGNDGNRLIMDMIAEDAFGLSDFEVVESSEQGML 177
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF--GEASVYTVVRSDYLDKC 238
+Q+ R + P VFL+WEPHP+N++ ++ YL GG++ G G A+V+T + Y+D C
Sbjct: 178 AQVGRATDRDEPIVFLAWEPHPMNANYDLTYLTGGDDWFGPNLGGATVHTNTTAGYVDAC 237
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN+ +LL+N++FS+ +ENE+M IL+ +D + L+ +P++L+ WL GV+T DG +
Sbjct: 238 PNVGKLLQNLEFSLEMENEIMGAILDEGEDPREAAEAWLKDNPEVLETWLEGVSTLDGGE 297
Query: 299 PSRQLERF 306
+
Sbjct: 298 ALPAAKEA 305
>gi|303246780|ref|ZP_07333057.1| Substrate-binding region of ABC-type glycine betaine transport
system [Desulfovibrio fructosovorans JJ]
gi|302491797|gb|EFL51677.1| Substrate-binding region of ABC-type glycine betaine transport
system [Desulfovibrio fructosovorans JJ]
Length = 319
Score = 224 bits (570), Expect = 1e-56, Method: Composition-based stats.
Identities = 98/310 (31%), Positives = 165/310 (53%), Gaps = 5/310 (1%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
K++ + ++ + + FA WT + T + IL ++LGYK +
Sbjct: 7 RKLVFAMCLALSVALMAGQALAKPGEITFASVSWTGVTIKTELAVQIL-DVLGYKARNLM 65
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
++VP+ ++++ D+F+G W PS+ Y ++GS+ EN+ GAKY LAV +
Sbjct: 66 VSVPLAYKAMATGEADVFLGNWMPSMATIAEKYFKDGSVIKYCENMTGAKYTLAVPTYEY 125
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
G+K + DI +Y +L +IYGIE GN+GN+ I MI+ N F L F+L+ +SE
Sbjct: 126 EAGLKDFSDIHRYADKLDHRIYGIEEGNDGNEIIQAMIDKNMFDLGDFKLVSSSEAGMLG 185
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE---ASVYTVVRSDYLDKC 238
Q++ R VFL W PH +N +++ YL G + + ASVYT +R + +
Sbjct: 186 QVQAFARKKQWIVFLGWSPHSMNETIDMKYLTGSTDATFGPNDGTASVYTNIRKGFDKQY 245
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQD-RQFVGRTMLRTHPDLLKNWLIGVTTFDGQ 297
PN+++ LKN+ F + + N +M + N+K++ + L+ +PD+LK WL GVTT G+
Sbjct: 246 PNVAKFLKNLTFPIPMMNTIMTTLHNSKEEQPRRAALKWLKANPDILKKWLDGVTTRKGK 305
Query: 298 DPSRQLERFM 307
+ F+
Sbjct: 306 PALPVVTAFL 315
>gi|26987046|ref|NP_742471.1| hypothetical protein PP_0304 [Pseudomonas putida KT2440]
gi|24981667|gb|AAN65935.1|AE016221_7 conserved hypothetical protein [Pseudomonas putida KT2440]
Length = 322
Score = 224 bits (570), Expect = 1e-56, Method: Composition-based stats.
Identities = 111/306 (36%), Positives = 176/306 (57%), Gaps = 5/306 (1%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+L + L + +A + +C VR WTD+ AT+AM V+L + LGY+T
Sbjct: 15 RSLLPLALSSIVATPLFAAEPAACKNVRLGVVNWTDVIATSAMAQVLL-DGLGYQTKQTS 73
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAVNDVG 120
+ + F +++K +D+F+GYW P + + I P+++ K++ +L+ A+ LAV
Sbjct: 74 ASQQIIFAGIRDKRLDMFLGYWNPIMTQTITPFVDANQFKVLDKPSLEDARATLAVPKYL 133
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ G+K++ DI K++KELG KIYGIEPG+ N +I MI N+F L F+L+E+SE
Sbjct: 134 YDKGLKTFADIHKFEKELGGKIYGIEPGSGANTQIKAMITKNQFDLGKFQLVESSEAGML 193
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKC 238
+ + R R VF W PHP+N ++++ YL ++ G A+V+TV DY ++C
Sbjct: 194 AAVDRAVRRKEAVVFFGWAPHPMNVNIDMAYLGDSQDALGPDEGRATVWTVTAPDYAERC 253
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN RLL N+KFS E+ MM+ +L + +D R L+ HP+ WL GVTTFDG+
Sbjct: 254 PNALRLLANLKFSAEDESRMMQPLL-DHKDALESARQWLKDHPEDKARWLEGVTTFDGKP 312
Query: 299 PSRQLE 304
+ L+
Sbjct: 313 AADNLK 318
>gi|107025555|ref|YP_623066.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia cenocepacia AU 1054]
gi|116693262|ref|YP_838795.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia cenocepacia HI2424]
gi|105894929|gb|ABF78093.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia cenocepacia AU 1054]
gi|116651262|gb|ABK11902.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia cenocepacia HI2424]
Length = 298
Score = 224 bits (570), Expect = 1e-56, Method: Composition-based stats.
Identities = 129/297 (43%), Positives = 186/297 (62%), Gaps = 5/297 (1%)
Query: 14 FSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKN 73
S YA D C VRFAD GW+DIAATT + S +L + LGY + +VP+TF +K+
Sbjct: 1 MSAVYAADPPVCKNVRFADVGWSDIAATTGLASTML-QGLGYNPTKTIASVPITFAGIKS 59
Query: 74 KGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAVNDVGFALGIKSYQDIA 132
K ID+F+GYW P+++ I P+ + G+IK++A NL GAKY LAV D + G+KS+ DI
Sbjct: 60 KQIDVFLGYWSPTMDPIIQPFTKAGTIKVLATPNLTGAKYTLAVPDYVYQGGLKSFADIQ 119
Query: 133 KYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIP 192
KY +L KIYGIEPGN+GN I MI+ N+F L F+L+E+SE ++ R R+
Sbjct: 120 KYADKLNGKIYGIEPGNDGNALIKKMIDGNQFGLGKFKLVESSEAGMLVEVNRAARDKQW 179
Query: 193 AVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKF 250
VFL WEPHP+N + I YL GG+++ +GEA V T DY +CPN+++ + N++F
Sbjct: 180 IVFLGWEPHPMNVQMKIDYLTGGDDVFGPNYGEAKVLTATPPDYAQRCPNVAKFVSNLQF 239
Query: 251 SVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ ++EN +M I+ NKQD L+ +P L WL GVTT DG+ ++ ++
Sbjct: 240 TTSIENHVMVPIM-NKQDPNKAAADWLKANPQALDKWLAGVTTLDGKPGLPAVKAYL 295
>gi|218662463|ref|ZP_03518393.1| choline ABC transporter, periplasmic binding protein [Rhizobium
etli IE4771]
Length = 318
Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats.
Identities = 140/300 (46%), Positives = 206/300 (68%), Gaps = 5/300 (1%)
Query: 2 YKILAVCLF--LTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K++ L+ + ++A D DSC+ VRF+D GWTDI ATTA SV+L+ +GY+T++
Sbjct: 7 FKLVTATAVAALSVATAAFAADPDSCSTVRFSDVGWTDITATTATASVVLKS-IGYQTDV 65
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
K+L+VPVT+ SLKNK ID+F+G W + EK + PYL++ S++ NL GAKY LA N
Sbjct: 66 KVLSVPVTYTSLKNKDIDVFLGNWMETQEKDVRPYLDDKSVESFGPNLVGAKYTLATNAK 125
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
G LGIK ++DIA +K++L KIYGIEPGN+GN+ I+DMI + F +KG ++E+SE
Sbjct: 126 GAELGIKDFKDIAAHKEDLDGKIYGIEPGNDGNRLIMDMIEKDTFGMKGMEVVESSEQGM 185
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDK 237
+Q+ R + P VFL WEPHP+N++ + YL GG++I FG A V+T VR+ YL++
Sbjct: 186 LAQVARADKAGKPVVFLGWEPHPMNTNFKLTYLSGGDDIFGPDFGGAKVFTNVRAGYLEE 245
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQ 297
CPN+ +LKN+KFS+ +EN++M ILN+ ++ + L+ +P L+ WL GV T DGQ
Sbjct: 246 CPNVGTMLKNLKFSLDMENQIMGKILNDGEEPEAAASAWLKANPSALEPWLAGVKTRDGQ 305
>gi|170697162|ref|ZP_02888257.1| choline ABC transporter, periplasmic binding protein [Burkholderia
ambifaria IOP40-10]
gi|170137998|gb|EDT06231.1| choline ABC transporter, periplasmic binding protein [Burkholderia
ambifaria IOP40-10]
Length = 322
Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats.
Identities = 110/306 (35%), Positives = 179/306 (58%), Gaps = 3/306 (0%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
LA + T ++A D +C V+ A GWTDI AT AM V+L+ LGY+ ++ L+V
Sbjct: 16 LAAAACVLTIQPAHAADPQTCRDVKMAAPGWTDIDATNAMAGVVLKA-LGYRQDVANLSV 74
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
P+T++ LK +D+F+G W P+ + P+++E SI ++ NL GAK+ LAV D A G
Sbjct: 75 PITYQGLKKGQVDVFLGNWMPAQAPLVKPFVDEKSIDVLHANLSGAKFTLAVPDYVAAAG 134
Query: 125 IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
++++ D+A+Y G KIYGIEPG NQ I M++++ + L+E+SE +Q+
Sbjct: 135 VRTFADLARYADRFGDKIYGIEPGAPANQNIKRMLSDHALGPANWSLVESSETGMLTQVE 194
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNIS 242
R R+ VFL+WEPH +N+ ++ YL GG+ +G A+V TV R + +C N++
Sbjct: 195 RAVRDKRWIVFLAWEPHLMNTKFHLTYLSGGDAYFGPNYGGATVNTVTRPGFAGQCANLA 254
Query: 243 RLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQ 302
RL + + FSV +EN ++ +L++K + +L+ P L++ WL GVTT G
Sbjct: 255 RLFRQMTFSVDVENRIIADMLDHKTSPALAAQHVLKADPALVEGWLDGVTTASGTPALPA 314
Query: 303 LERFMN 308
+ ++
Sbjct: 315 VRAALD 320
>gi|330819979|ref|YP_004348841.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia gladioli
BSR3]
gi|327371974|gb|AEA63329.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia gladioli
BSR3]
Length = 331
Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats.
Identities = 118/285 (41%), Positives = 168/285 (58%), Gaps = 3/285 (1%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWY 84
CT VR A GWTDI AT AMT V+L + LGY+ + L+VP+TF+ LK ID+F+G W
Sbjct: 45 CTEVRMAAPGWTDIDATNAMTGVVL-DALGYRQRVSNLSVPITFQGLKKGQIDVFLGNWM 103
Query: 85 PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYG 144
P+ + P++EE SI+++ NL AK+ LAV D A G+ S+ D+AKY G +IYG
Sbjct: 104 PAQGPLVKPFVEEKSIEVLHPNLTHAKFTLAVPDYVAAAGVHSFADLAKYADRFGNRIYG 163
Query: 145 IEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPIN 204
IEPG NQ I MI + + L+E+SE +Q+ R +R++ VFL+WEPH +N
Sbjct: 164 IEPGAPANQNIKRMIADKALGAGNWSLVESSETGMLTQVERAERDHQWIVFLAWEPHLMN 223
Query: 205 SDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI 262
+ + YL GG+ +G A+V TV RS Y ++CPN+ +L + + FSV +EN M+ +
Sbjct: 224 TRFHPVYLSGGDAYFGPDYGGATVNTVARSGYANQCPNLGKLFRQVSFSVDVENAMIASM 283
Query: 263 LNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
L +K + L+ HPDLL WL GVTT G +
Sbjct: 284 LVDKLSPADAAKRALQAHPDLLDAWLAGVTTASGAPALPAARTAL 328
>gi|167572359|ref|ZP_02365233.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
oklahomensis C6786]
Length = 316
Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats.
Identities = 122/294 (41%), Positives = 188/294 (63%), Gaps = 5/294 (1%)
Query: 17 SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGI 76
S+A+D+ +C VRFAD GWTDI +TTA+ S++ + LGYK + +VP++F LKNK +
Sbjct: 23 SFAQDSAACRNVRFADIGWTDITSTTALASLLF-DGLGYKPTTTISSVPISFAGLKNKQL 81
Query: 77 DIFMGYWYPSLEKFIAPYLEEGSIKLV-AENLQGAKYMLAVNDVGFALGIKSYQDIAKYK 135
DI +GYW+P + + P+L+ SI +V NL GAK LAV + G+KS+ DIAK++
Sbjct: 82 DISLGYWWPVQQHQLQPFLDSKSIAVVEPPNLSGAKATLAVPSYVYQAGLKSFDDIAKHR 141
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
EL KIYGIEPG+ N I MI+ N++ L GF+L+E+SE + R R+ VF
Sbjct: 142 AELDGKIYGIEPGSSANATIQKMIDTNQYGLGGFKLVESSEAGMLVTVDRAIRDKKWVVF 201
Query: 196 LSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVA 253
L WEPHP+N ++++YL GG+ +GEA VYT+ DY+ +CPN +L+ N++F+
Sbjct: 202 LGWEPHPMNIQISMNYLSGGDASFGPNYGEARVYTLTAPDYMTRCPNAGKLVGNLRFTTQ 261
Query: 254 LENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+EN++M+ ++ NK + L+ +P +L WL GV T+DG+D ++ ++
Sbjct: 262 MENQLMQAVM-NKVRPTEAAKAYLKKNPQVLDAWLAGVKTYDGKDGLSAVKAYL 314
>gi|330500996|ref|YP_004377865.1| glycine betaine ABC transporter substrate-binding protein
[Pseudomonas mendocina NK-01]
gi|328915282|gb|AEB56113.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas mendocina NK-01]
Length = 306
Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats.
Identities = 100/288 (34%), Positives = 163/288 (56%), Gaps = 2/288 (0%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
+ +C+ V+ D GW+DIA T + S +L + LGY+ + LAVP+ F L+ +D+F
Sbjct: 21 AEDAACSTVKLGDPGWSDIAVTNGIASFLL-DGLGYEAQSQTLAVPIIFAGLQKGQVDVF 79
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
+G W P+ + ++ G + V +NL+G +Y LAV + G+K++ D+ KY + G
Sbjct: 80 LGNWMPAQQSNYDKFVASGEVDKVTQNLEGTEYTLAVPTYAYEAGVKTFADLDKYADKFG 139
Query: 140 AKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWE 199
K+YGI G+ N+ I MI ++F L ++L+E+SE A Q+ R + + VFL W
Sbjct: 140 HKLYGIASGSPANESIKQMIAADEFGLGDWKLVESSEQAMLVQVGRAMKRDQFVVFLGWT 199
Query: 200 PHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMM 259
PHP+N ++ YL GGE+ G V T+ R Y +CPN+ +LL N+KF+ +EN +M
Sbjct: 200 PHPMNVQYDMKYLKGGEKYFG-ASGQVNTLARKGYAAQCPNVGKLLTNLKFTQDMENSIM 258
Query: 260 KLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+L+ + + L+ +P +L WL GVTT DG D ++ +
Sbjct: 259 DQVLSKQASNDAAIKAWLKANPQVLDGWLQGVTTRDGGDGLAAVKARL 306
>gi|78061461|ref|YP_371369.1| ABC proline/glycine betaine transporter, periplasmic ligand binding
protein [Burkholderia sp. 383]
gi|77969346|gb|ABB10725.1| ABC proline/glycine betaine transporter, periplasmic ligand binding
protein [Burkholderia sp. 383]
Length = 317
Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats.
Identities = 123/291 (42%), Positives = 184/291 (63%), Gaps = 5/291 (1%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
DA +C VRFAD GWTDI +TTA+ S + E LGYK + +VP++F LK+K +D+
Sbjct: 27 TDAATCRTVRFADIGWTDITSTTALASTVFEA-LGYKPTTTIASVPISFAGLKSKQLDVS 85
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLV-AENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL 138
+GYW+P +K + P+L+ SI +V NL GAK LAV + G+K+++DIAK++ EL
Sbjct: 86 LGYWWPVQQKQLQPFLDNKSINVVEPPNLSGAKATLAVPSYEYQAGLKTFEDIAKHRAEL 145
Query: 139 GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
KIYGIEPG+ N I MI+ N++ L GF+L+E+SE + R R VFL W
Sbjct: 146 DGKIYGIEPGSSANATIQKMIDTNQYGLGGFKLVESSEAGMLVTVERAIREKKWVVFLGW 205
Query: 199 EPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALEN 256
EPHP+N L+++YL GG+ +GEA VYT+ D++ +CPN +L+ N++FS LEN
Sbjct: 206 EPHPMNIQLSMNYLSGGDASFGPNYGEARVYTLTAPDFISRCPNAGKLVTNLRFSTQLEN 265
Query: 257 EMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
++M+ ++ NK + L+ +P +L WL GV TFDG+D ++ ++
Sbjct: 266 QLMQSVM-NKTKPADAAKAYLKKNPQVLDPWLAGVKTFDGKDGLPAVKAYL 315
>gi|313496668|gb|ADR58034.1| Substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas putida BIRD-1]
Length = 314
Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats.
Identities = 111/306 (36%), Positives = 177/306 (57%), Gaps = 5/306 (1%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+L + L + +A + +C VR WTD+ AT+AM V+L + LGY+T
Sbjct: 7 RSLLPLALSSIVATPLFAAEPAACKNVRLGVVNWTDVIATSAMAQVLL-DGLGYQTKQTS 65
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAVNDVG 120
+ + F +++K +D+F+GYW P + + I P+++ +K++ +L+ A+ LAV
Sbjct: 66 ASQQIIFAGIRDKRLDMFLGYWNPIMTQTITPFVDANQVKVLDKPSLEDARATLAVPKYL 125
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ G+K++ DI K++KELG KIYGIEPG+ N +I MI N+F L F+L+E+SE
Sbjct: 126 YDKGLKTFADIHKFEKELGGKIYGIEPGSGANTQIKAMITKNQFDLGKFQLVESSEAGML 185
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKC 238
+ + R R VF W PHP+N ++++ YL ++ G A+V+TV DY ++C
Sbjct: 186 AAVDRAVRRKEAVVFFGWAPHPMNVNIDMAYLGDSQDALGPDEGRATVWTVTAPDYAERC 245
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN RLL N+KFS E+ MM+ +L + +D R L+ HP+ WL GVTTFDG+
Sbjct: 246 PNAHRLLANLKFSAEDESRMMQPLL-DHKDALESARQWLKDHPEDKARWLEGVTTFDGKP 304
Query: 299 PSRQLE 304
+ L+
Sbjct: 305 AADNLK 310
>gi|332715554|ref|YP_004443020.1| substrate-binding region of ABC-type glycine betaine transport
system [Agrobacterium sp. H13-3]
gi|325062239|gb|ADY65929.1| substrate-binding region of ABC-type glycine betaine transport
system [Agrobacterium sp. H13-3]
Length = 317
Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats.
Identities = 122/312 (39%), Positives = 189/312 (60%), Gaps = 8/312 (2%)
Query: 1 MYKILAVCLFLTTFSISY---ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M++I A LFL+ + S A D +C +R +D GWTDI AT + SV+L + LGY+
Sbjct: 7 MHRI-AAGLFLSVAAFSTPLYAADDAACKTIRLSDPGWTDITATNGVASVLL-DALGYEA 64
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
++K L+VP+ ++++KN ID+F+G W P+ + F+ + ++ +NL+GAK+ LAV
Sbjct: 65 DVKTLSVPIGYQAMKNGEIDVFLGNWMPAQKSFVDDLNAAKAADVMTKNLEGAKFTLAVP 124
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
G+K + D+AK+ E +KIYGIEPG NQ I +I+ N F LKG++L+E+ E
Sbjct: 125 SYMAEKGVKDFSDLAKHADEFESKIYGIEPGAPANQNIQKIIDANDFGLKGWQLVESGEQ 184
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYL 235
A +Q+ R ++ VFL+W PHP+N ++I YL GG+ FG A VYT+ R+ +
Sbjct: 185 AMLAQVERAGKDKKAVVFLAWAPHPMNEKIDIAYLSGGDAYFGPNFGGAEVYTLARTGWP 244
Query: 236 DKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFD 295
KCPN + L KN+KF + +EN +M IL +D + T L+ +P L WL GVTT D
Sbjct: 245 QKCPNAATLFKNLKFDIGMENALMGSIL-GGEDSKAAAATWLKANPTSLDGWLQGVTTLD 303
Query: 296 GQDPSRQLERFM 307
G+ + ++ +
Sbjct: 304 GKPGADAVKGKL 315
>gi|134292111|ref|YP_001115847.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia vietnamiensis G4]
gi|134135268|gb|ABO56382.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia vietnamiensis G4]
Length = 317
Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats.
Identities = 121/287 (42%), Positives = 182/287 (63%), Gaps = 5/287 (1%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYW 83
SC VRFAD GWTDI +TTA+ S + E LGYK + +VP++F LK+K +D+ +GYW
Sbjct: 31 SCRNVRFADIGWTDITSTTALASTVFE-GLGYKPTTTIASVPISFAGLKSKQLDVSLGYW 89
Query: 84 YPSLEKFIAPYLEEGSIKLV-AENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKI 142
+P +K + P+L+ SI +V NL GAK LAV + G+K++ DIAK++ EL KI
Sbjct: 90 WPVQQKQLQPFLDSKSINVVEPPNLSGAKATLAVPSYEYQAGLKTFDDIAKHRAELDGKI 149
Query: 143 YGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP 202
YGIEPG+ N I MI+ N++ L GF+L+E+SE + R R VFL WEPHP
Sbjct: 150 YGIEPGSSANATIQKMIDTNQYGLGGFKLVESSEAGMLVTVERAIREKKWVVFLGWEPHP 209
Query: 203 INSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMK 260
+N + ++YL GG+ +GEA VYT+ SD++ +CPN +L++N++F+ LEN++M+
Sbjct: 210 MNIQIGMNYLAGGDAAFGPNYGEARVYTLTASDFISRCPNAGKLVENLRFTTQLENQLMQ 269
Query: 261 LILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
++ NK + L+ +P +L WL GV TFDG+D ++ ++
Sbjct: 270 SVM-NKTKPSDAAKAYLKKNPQVLDAWLAGVKTFDGKDGLPAVKAYL 315
>gi|167566075|ref|ZP_02358991.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
oklahomensis EO147]
Length = 316
Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats.
Identities = 127/291 (43%), Positives = 185/291 (63%), Gaps = 5/291 (1%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
D +C VRFAD GWTDIAATT + S +L LGY + +VP+TF +K+K ID+F
Sbjct: 25 GDPSTCKAVRFADVGWTDIAATTGLASTML-AGLGYTPTKTIASVPITFAGIKSKQIDVF 83
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL 138
+GYW P+++ IAP+ + G+IK++A NL GAKY LAV D + G+KS+ DI K+ +L
Sbjct: 84 LGYWSPTMDPMIAPFTKAGTIKVLATPNLTGAKYTLAVPDYVYQGGLKSFADIQKFADKL 143
Query: 139 GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
KIYGIEPGN+GN I MI+ N+F L F+L+E+SE ++ R R+ VFL W
Sbjct: 144 NGKIYGIEPGNDGNALIKKMIDGNQFGLGKFKLVESSEAGMLVEVNRAIRDKQWIVFLGW 203
Query: 199 EPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALEN 256
EPHP+N + I YL GG+++ +GEA V T DY +CPN+++ + N++F+ ++EN
Sbjct: 204 EPHPMNVQMKIDYLSGGDDVFGPNYGEAKVLTATPPDYSTRCPNVAKFVSNLQFTTSIEN 263
Query: 257 EMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+M I+ NK+D L+ +P L WL GVTTFDG+ ++ ++
Sbjct: 264 HVMLPIM-NKEDPNKAASEWLKANPQALDKWLAGVTTFDGKPGLPAVKHYL 313
>gi|148545579|ref|YP_001265681.1| glycine betaine ABC transporter substrate-binding protein
[Pseudomonas putida F1]
gi|148509637|gb|ABQ76497.1| Substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas putida F1]
Length = 314
Score = 223 bits (567), Expect = 3e-56, Method: Composition-based stats.
Identities = 110/306 (35%), Positives = 176/306 (57%), Gaps = 5/306 (1%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+L + L + +A + +C VR WTD+ AT+AM V+L + LGY+T
Sbjct: 7 RSLLPLALSSIVATPLFAAEPAACKNVRLGVVNWTDVIATSAMAQVLL-DGLGYQTKQTS 65
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAVNDVG 120
+ + F +++K +D+F+GYW P + + I P+++ +K++ +L+ A+ LAV
Sbjct: 66 ASQQIIFAGIRDKRLDMFLGYWNPIMTQTITPFVDANQVKVLDKPSLEDARATLAVPKYL 125
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ G+K++ DI K++K LG KIYGIEPG+ N +I MI N+F L F+L+E+SE
Sbjct: 126 YDKGLKTFADIHKFEKALGGKIYGIEPGSGANTQIKAMITKNQFDLGKFQLVESSEAGML 185
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKC 238
+ + R R VF W PHP+N ++++ YL ++ G A+V+TV DY ++C
Sbjct: 186 AAVDRAVRRKEAVVFFGWAPHPMNVNIDMAYLGDSQDALGPDEGRATVWTVTAPDYAERC 245
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN RLL N+KFS E+ MM+ +L + +D R L+ HP+ WL GVTTFDG+
Sbjct: 246 PNAHRLLANLKFSAEDESRMMQPLL-DHKDALESARQWLKDHPEDKARWLEGVTTFDGKP 304
Query: 299 PSRQLE 304
+ L+
Sbjct: 305 AADNLK 310
>gi|114705139|ref|ZP_01438047.1| ABC glycine betaine/L-proline transporter, periplasmic
substrate-binding subunit [Fulvimarina pelagi HTCC2506]
gi|114539924|gb|EAU43044.1| ABC glycine betaine/L-proline transporter, periplasmic
substrate-binding subunit [Fulvimarina pelagi HTCC2506]
Length = 312
Score = 223 bits (567), Expect = 3e-56, Method: Composition-based stats.
Identities = 129/312 (41%), Positives = 192/312 (61%), Gaps = 7/312 (2%)
Query: 1 MYKIL--AVCLFLTTFSISYARDA---DSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M K L FL T +++ A +A ++C V +D GWTDI TTA T ILE LGY
Sbjct: 1 MRKALGTIAVAFLGTTALAGAANAQVSEACQTVTMSDVGWTDITTTTATTKHILE-GLGY 59
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
++K+L+VPVTF SL++ +D+F+G W P+ I PYLE G I+ V+ NL+G KY LA
Sbjct: 60 TVDVKVLSVPVTFASLESDDVDVFLGNWLPAQNAAIGPYLESGEIENVSTNLEGTKYTLA 119
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
V + G+++Y DIAK++ +L KIYGIEPGNEGN ++ + N L GF ++E+S
Sbjct: 120 VPTYLYEEGLQTYADIAKFRDQLDEKIYGIEPGNEGNAYLVSLTEENTHDLSGFEVVESS 179
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYL 235
E + + R P VFL WEPHP+N++ ++ YL GGE+ G E +V+TV R Y+
Sbjct: 180 EQGMLAMVGRAYSKEDPIVFLGWEPHPMNANYDLKYLTGGEDFFGG-EGTVHTVARQGYM 238
Query: 236 DKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFD 295
++CPN++ LKN KFS+ +EN++M IL++ ++ L+ +P + WL GVTT D
Sbjct: 239 EECPNVTTFLKNQKFSLDMENQIMGQILDDGEEAGVATEAWLKANPGEWEGWLEGVTTVD 298
Query: 296 GQDPSRQLERFM 307
G+ ++ +
Sbjct: 299 GEPGLAAVKESL 310
>gi|167565257|ref|ZP_02358173.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
oklahomensis EO147]
Length = 316
Score = 223 bits (567), Expect = 3e-56, Method: Composition-based stats.
Identities = 122/294 (41%), Positives = 189/294 (64%), Gaps = 5/294 (1%)
Query: 17 SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGI 76
S+A+D+ +C VRFAD GWTDI +TTA+ S++ + LGYK + +VP++F LKNK +
Sbjct: 23 SFAQDSAACRNVRFADIGWTDITSTTALASLLF-DGLGYKPTTTISSVPISFAGLKNKQL 81
Query: 77 DIFMGYWYPSLEKFIAPYLEEGSIKLV-AENLQGAKYMLAVNDVGFALGIKSYQDIAKYK 135
DI +GYW+P + + P+L+ SI +V NL GAK LAV + +G+KS+ DIAK++
Sbjct: 82 DISLGYWWPVQQHQLQPFLDSKSIAVVEPPNLSGAKATLAVPSYVYQVGLKSFDDIAKHR 141
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
EL KIYGIEPG+ N I MI+ N++ L GF+L+E+SE + R R+ VF
Sbjct: 142 AELDGKIYGIEPGSSANATIQKMIDTNQYGLGGFKLVESSEAGMLVTVDRAIRDKKWVVF 201
Query: 196 LSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVA 253
L WEPHP+N ++++YL GG+ +GEA VYT+ DY+ +CPN +L+ N++F+
Sbjct: 202 LGWEPHPMNIQISMNYLSGGDASFGPNYGEARVYTLTAPDYMTRCPNAGKLVGNLRFTTQ 261
Query: 254 LENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+EN++M+ ++ NK + L+ +P +L WL GV T+DG+D ++ ++
Sbjct: 262 MENQLMQAVM-NKVRPTEAAKAYLKKNPQVLDAWLAGVKTYDGKDGLSAVKAYL 314
>gi|167462264|ref|ZP_02327353.1| putative ABC transporter, proline/glycine betaine permease protein
[Paenibacillus larvae subsp. larvae BRL-230010]
gi|322383435|ref|ZP_08057217.1| ABC transporter proline/glycine betaine permease-like protein
[Paenibacillus larvae subsp. larvae B-3650]
gi|321152288|gb|EFX45112.1| ABC transporter proline/glycine betaine permease-like protein
[Paenibacillus larvae subsp. larvae B-3650]
Length = 575
Score = 223 bits (567), Expect = 3e-56, Method: Composition-based stats.
Identities = 58/287 (20%), Positives = 118/287 (41%), Gaps = 5/287 (1%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP 65
L ++ + + ++ + W A+T + V+L++ LGY ++ + +
Sbjct: 291 LAALVISAILTNVMSTGGTGKQIKLSYVAWDSEIASTNVVKVVLQDKLGYNVDMLQVDIG 350
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
+ + N +D + W P K +G + NL+G K L V +
Sbjct: 351 PMWTGVSNGSVDAMVAAWLPRTAKSYYDA-NKGKFDELGANLEGTKLGLVVPSYLENVNS 409
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
+ + + G KI GIEPG + + + S + L+E+S A +++ +
Sbjct: 410 IEDLKKPEVRDQFGGKIIGIEPGAGIMEATQKALKDYGLSD--WTLVESSSAAMTTELTK 467
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
N P V W PH + + +N+ YL ++ G + ++TVVR + P+ + L
Sbjct: 468 AYENKQPMVVTGWTPHWMFAKMNLKYLDDPKKSYGE-DEQIHTVVRKGLKEDKPDAYQFL 526
Query: 246 KNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVT 292
++ E+M + + + + ++ HPD + WL G+
Sbjct: 527 DQFHWTPKDMEEVMVDV-QSGTEPEEAAAKWVQNHPDQVNEWLKGIE 572
>gi|167573153|ref|ZP_02366027.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
oklahomensis C6786]
Length = 316
Score = 223 bits (567), Expect = 3e-56, Method: Composition-based stats.
Identities = 126/291 (43%), Positives = 185/291 (63%), Gaps = 5/291 (1%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
D +C VRFAD GWTDIAATT + S +L LGY + +VP+TF +K+K ID+F
Sbjct: 25 GDPSTCKAVRFADVGWTDIAATTGLASTML-AGLGYTPTKTIASVPITFAGIKSKQIDVF 83
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL 138
+GYW P+++ IAP+ + G+IK++A NL GAKY LAV D + G+KS+ DI ++ +L
Sbjct: 84 LGYWSPTMDPMIAPFTKAGTIKVLATPNLTGAKYTLAVPDYVYQGGLKSFADIQRFADKL 143
Query: 139 GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
KIYGIEPGN+GN I MI+ N+F L F+L+E+SE ++ R R+ VFL W
Sbjct: 144 NGKIYGIEPGNDGNALIKKMIDGNQFGLGKFKLVESSEAGMLVEVNRAIRDKQWIVFLGW 203
Query: 199 EPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALEN 256
EPHP+N + I YL GG+++ +GEA V T DY +CPN+++ + N++F+ ++EN
Sbjct: 204 EPHPMNVQMKIDYLSGGDDVFGPNYGEAKVLTATPPDYSTRCPNVAKFVSNLQFTTSIEN 263
Query: 257 EMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+M I+ NK+D L+ +P L WL GVTTFDG+ ++ ++
Sbjct: 264 HVMLPIM-NKEDPNKAASEWLKANPQALDKWLAGVTTFDGKPGLPAVKHYL 313
>gi|206564131|ref|YP_002234894.1| putative ABC transporter solute-binding protein [Burkholderia
cenocepacia J2315]
gi|198040171|emb|CAR56154.1| putative solute-binding component of ABC transporter [Burkholderia
cenocepacia J2315]
Length = 317
Score = 223 bits (567), Expect = 4e-56, Method: Composition-based stats.
Identities = 120/286 (41%), Positives = 179/286 (62%), Gaps = 5/286 (1%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWY 84
C VRFAD GWTDI +TTA+ S + E LGYK + +VP++F LK+K +D+ +GYW+
Sbjct: 32 CRTVRFADIGWTDITSTTALASTVFEA-LGYKPTTTIASVPISFAGLKSKQLDVSLGYWW 90
Query: 85 PSLEKFIAPYLEEGSIKLV-AENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIY 143
P +K + P+L+ SI +V NL GAK LAV + G+K++ DIAK++ EL KIY
Sbjct: 91 PVQQKQLQPFLDSKSINVVEPPNLSGAKATLAVPSYEYQAGLKTFDDIAKHRAELDGKIY 150
Query: 144 GIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPI 203
GIEPG+ N I MI+ N++ L GF+L+E+SE + R R VFL WEPHP+
Sbjct: 151 GIEPGSSANATIQKMIDTNQYGLGGFKLVESSEAGMLVTVERAIREKKWVVFLGWEPHPM 210
Query: 204 NSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKL 261
N +++YL GG+ +GEA VYT+ D++ +CPN +L+ N++FS LEN++M+
Sbjct: 211 NIQFSMNYLSGGDAAFGPNYGEARVYTLTAPDFIARCPNAGKLVTNLRFSTQLENQLMQS 270
Query: 262 ILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
++ NK + L+ +P +L WL GV TFDG+D ++ ++
Sbjct: 271 VM-NKTKPAEAAKAYLKKNPQVLDPWLAGVKTFDGKDGLPAVKAYL 315
>gi|126443009|ref|YP_001063019.1| glycine betaine/L-proline ABC transporter periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
pseudomallei 668]
gi|134282527|ref|ZP_01769231.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
pseudomallei 305]
gi|237508767|ref|ZP_04521482.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
pseudomallei MSHR346]
gi|254183826|ref|ZP_04890418.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
pseudomallei 1655]
gi|126222500|gb|ABN86005.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
pseudomallei 668]
gi|134246084|gb|EBA46174.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
pseudomallei 305]
gi|184214359|gb|EDU11402.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
pseudomallei 1655]
gi|235000972|gb|EEP50396.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
pseudomallei MSHR346]
Length = 328
Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats.
Identities = 128/291 (43%), Positives = 186/291 (63%), Gaps = 5/291 (1%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
DA +C VRFAD GWTDIAATT + S +L LGY + +VP+TF +K+K ID+F
Sbjct: 37 GDAPTCKAVRFADVGWTDIAATTGLASTML-AGLGYAPTKTIASVPITFAGIKSKQIDVF 95
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL 138
+GYW P+++ IAP+ + G+IK++A NL GAKY LAV D + G+KS+ DI KY +L
Sbjct: 96 LGYWSPTMDPMIAPFTKAGTIKVLAAPNLTGAKYTLAVPDYVYQGGLKSFADIQKYADKL 155
Query: 139 GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
+IYGIEPGN+GN I MI+ N+F L F+L+E+SE ++ R R+ VFL W
Sbjct: 156 NGRIYGIEPGNDGNALIKKMIDGNQFGLGKFKLVESSEAGMLVEVNRAIRDKQWIVFLGW 215
Query: 199 EPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALEN 256
EPHP+N + I YL GG+++ +GEA V T DY +CPN+++ + N++F+ ++EN
Sbjct: 216 EPHPMNVQMKIDYLSGGDDVFGPNYGEAKVLTATPPDYAARCPNVAKFVSNLQFTTSIEN 275
Query: 257 EMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+M I+ NK+D L+ +P L WL GVTTFDG+ ++ ++
Sbjct: 276 HVMLPIM-NKEDPNKAAAEWLKANPQSLDKWLAGVTTFDGKPGLPAVKHYL 325
>gi|260427022|ref|ZP_05781001.1| substrate-binding region of ABC-type glycine betaine transport
system [Citreicella sp. SE45]
gi|260421514|gb|EEX14765.1| substrate-binding region of ABC-type glycine betaine transport
system [Citreicella sp. SE45]
Length = 306
Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats.
Identities = 122/284 (42%), Positives = 178/284 (62%), Gaps = 2/284 (0%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYW 83
C V +D GWTDI TTA +LE LGY ++K+L+VPVTF SL++ +D+F+G W
Sbjct: 23 DCDAVSMSDVGWTDITTTTAAAKHVLE-GLGYDVDVKVLSVPVTFASLESDDVDVFLGNW 81
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIY 143
P+ I PYL+ G I+ + NL+G KY LAV + G++SY DIAK++ EL KIY
Sbjct: 82 MPAQNGAIKPYLDSGEIESINTNLEGTKYTLAVPAYAYEAGLQSYADIAKFEDELDGKIY 141
Query: 144 GIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPI 203
GIEPGNEGN ++ + NKF L F ++E+SE +Q+ R + P VFL WEPHP+
Sbjct: 142 GIEPGNEGNAYLVSLTEENKFGLGNFDVVESSEQGMLAQVARFYKKEEPVVFLGWEPHPM 201
Query: 204 NSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLIL 263
N+ ++ YLPGGE+ G E V+TV R + ++CPN+ +L N+ F++ +EN++M IL
Sbjct: 202 NATFDLKYLPGGEDFFGG-EGVVHTVTRKGFSEECPNLGKLFANMDFTLEMENKIMGEIL 260
Query: 264 NNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
++ D L+ +PD+L +WL GVTT DG D ++ +
Sbjct: 261 DDGADPAEATEAWLKENPDVLDSWLDGVTTVDGGDAVAAVKSSL 304
>gi|170737591|ref|YP_001778851.1| choline ABC transporter, periplasmic binding protein [Burkholderia
cenocepacia MC0-3]
gi|169819779|gb|ACA94361.1| choline ABC transporter, periplasmic binding protein [Burkholderia
cenocepacia MC0-3]
Length = 317
Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats.
Identities = 123/300 (41%), Positives = 185/300 (61%), Gaps = 5/300 (1%)
Query: 11 LTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRS 70
T + +A +C VRFAD GWTDI +TTA+ S + E LGYK + +VP++F
Sbjct: 18 AFTHAALAETEATTCRTVRFADIGWTDITSTTALASTVFEA-LGYKPTTTIASVPISFAG 76
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLV-AENLQGAKYMLAVNDVGFALGIKSYQ 129
LK+K +D+ +GYW+P +K + P+L+ SI +V NL GAK LAV + G+K++
Sbjct: 77 LKSKQLDVSLGYWWPVQQKQLQPFLDSKSINVVEPPNLSGAKATLAVPSYAYQAGLKTFD 136
Query: 130 DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRN 189
DIAK++ EL KIYGIEPG+ N I MI+ N++ L GF+L+E+SE + R R
Sbjct: 137 DIAKHRAELDGKIYGIEPGSSANATIQKMIDTNQYGLGGFKLVESSEAGMLVTVERAVRE 196
Query: 190 NIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKN 247
VFL WEPHP+N L+++YL GG+ +GEA VYT+ D++ +CPN +L+ N
Sbjct: 197 KKWVVFLGWEPHPMNIQLSMNYLSGGDAAFGPNYGEARVYTLTAPDFIARCPNAGKLVTN 256
Query: 248 IKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
++FS LEN++M+ ++ NK + L+ +P +L WL GV TFDG+D ++ ++
Sbjct: 257 LRFSTQLENQLMQSVM-NKTKPAEAAKAYLKKNPQVLDPWLAGVKTFDGKDGLPAVKAYL 315
>gi|254250027|ref|ZP_04943347.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia cenocepacia PC184]
gi|124876528|gb|EAY66518.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia cenocepacia PC184]
Length = 317
Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats.
Identities = 123/300 (41%), Positives = 186/300 (62%), Gaps = 5/300 (1%)
Query: 11 LTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRS 70
T + +A +C VRFAD GWTDI +TTA+ S + E LGYK + +VP++F
Sbjct: 18 AFTHAALAETEATTCRTVRFADIGWTDITSTTALASTVFEA-LGYKPTTTIASVPISFAG 76
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLV-AENLQGAKYMLAVNDVGFALGIKSYQ 129
LK+K +D+ +GYW+P +K + P+L+ SI +V NL GAK LAV + G+K++
Sbjct: 77 LKSKQLDVSLGYWWPVQQKQLQPFLDSKSINVVEPPNLSGAKATLAVPSYAYQAGLKTFD 136
Query: 130 DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRN 189
DIAK++ EL KIYGIEPG+ N I MI+ N++ L GF+L+E+SE + R R+
Sbjct: 137 DIAKHRAELDGKIYGIEPGSSANATIQKMIDTNQYGLGGFKLVESSEAGMLVTVERAVRD 196
Query: 190 NIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKN 247
VFL WEPHP+N L+++YL GG+ +GEA VYT+ D++ +CPN +L+ N
Sbjct: 197 KKWVVFLGWEPHPMNIQLSMNYLSGGDAAFGPNYGEARVYTLTAPDFIARCPNAGKLVTN 256
Query: 248 IKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
++FS LEN++M+ ++ NK + L+ +P +L WL GV TFDG+D ++ ++
Sbjct: 257 LRFSTQLENQLMQSVM-NKTKPAEAAKAYLKKNPQVLDPWLAGVKTFDGKDGLPAVKAYL 315
>gi|161520137|ref|YP_001583564.1| choline ABC transporter, periplasmic binding protein [Burkholderia
multivorans ATCC 17616]
gi|189353684|ref|YP_001949311.1| glycine betaine/proline transport system substrate-binding protein
[Burkholderia multivorans ATCC 17616]
gi|160344187|gb|ABX17272.1| choline ABC transporter, periplasmic binding protein [Burkholderia
multivorans ATCC 17616]
gi|189337706|dbj|BAG46775.1| glycine betaine/proline transport system substrate-binding protein
[Burkholderia multivorans ATCC 17616]
Length = 317
Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats.
Identities = 120/287 (41%), Positives = 181/287 (63%), Gaps = 5/287 (1%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYW 83
SC VRFAD GWTDI +TTA+ S + E LGYK + +VP++F LK+K +D+ +GYW
Sbjct: 31 SCRNVRFADIGWTDITSTTALASTVFEA-LGYKPTTTISSVPISFAGLKSKQLDVSLGYW 89
Query: 84 YPSLEKFIAPYLEEGSIKLV-AENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKI 142
+P +K + P+L+ SI ++ NL GAK LAV + G+K++ DIAK++ EL KI
Sbjct: 90 WPVQQKQLQPFLDSKSINVIEPPNLSGAKATLAVPSYEYQAGLKTFDDIAKHRAELDGKI 149
Query: 143 YGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP 202
YGIEPG+ N I MI+ N++ L GF+L+E+SE + R R VFL WEPHP
Sbjct: 150 YGIEPGSSANATIQKMIDTNQYGLGGFKLVESSEAGMLVTVERAIREKKWVVFLGWEPHP 209
Query: 203 INSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMK 260
+N ++++YL GG+ +GEA VYT+ D+L +CPN +L+ N++F+ LEN++M+
Sbjct: 210 MNIQISMNYLSGGDAAFGPNYGEARVYTLTAPDFLTRCPNAGKLVTNLRFTTQLENQLMQ 269
Query: 261 LILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
++ NK + L+ +P +L WL GV TFDG+D ++ ++
Sbjct: 270 AVM-NKTKPADAAKAYLKKNPQVLDPWLAGVKTFDGKDGLPAVKAYL 315
>gi|307727259|ref|YP_003910472.1| choline ABC transporter periplasmic-binding protein [Burkholderia
sp. CCGE1003]
gi|307587784|gb|ADN61181.1| choline ABC transporter, periplasmic binding protein [Burkholderia
sp. CCGE1003]
Length = 336
Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats.
Identities = 122/295 (41%), Positives = 183/295 (62%), Gaps = 5/295 (1%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKG 75
+ A+D +C VRFAD GWTDI +TTA+ S + E LGY+ + +VP++F LK+K
Sbjct: 42 PASAQDPAACRAVRFADIGWTDITSTTALASTVFE-GLGYQPVTTVASVPISFAGLKSKQ 100
Query: 76 IDIFMGYWYPSLEKFIAPYLEEGSIKLV-AENLQGAKYMLAVNDVGFALGIKSYQDIAKY 134
+D+ +GYW+P EK IAP+++ SI ++ NL GAK AV + G+K++ DIAK+
Sbjct: 101 LDVSLGYWWPVQEKAIAPFVQSKSIDVLQPPNLTGAKATFAVPGYAYDAGLKTFADIAKH 160
Query: 135 KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAV 194
+ +L KIYGIEPG+ N I MI NKF L GF+LIE+SE + R R+ V
Sbjct: 161 RDQLDGKIYGIEPGSSANAAIQKMIATNKFGLGGFKLIESSEAGMLVSVERAIRDKKWVV 220
Query: 195 FLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSV 252
FL WEPHP+N +++ YL G + + GEA VYT+ DYL +CPN +L+ N++FS
Sbjct: 221 FLGWEPHPMNIQIDMKYLSGSDGVFGPNDGEARVYTLTSPDYLTRCPNAGKLVSNLRFST 280
Query: 253 ALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
LEN +M+ ++ NK+ + L+ +P +L WL GV T+DG++ ++ ++
Sbjct: 281 QLENVVMQSVM-NKEKPADAAKAYLKKNPQVLDAWLAGVKTYDGKEGLPAVKAYL 334
>gi|310818711|ref|YP_003951069.1| ABC-type proline/glycine betaine transport system, periplasmic
component [Stigmatella aurantiaca DW4/3-1]
gi|309391783|gb|ADO69242.1| ABC-type proline/glycine betaine transport system, periplasmic
component [Stigmatella aurantiaca DW4/3-1]
Length = 595
Score = 222 bits (565), Expect = 5e-56, Method: Composition-based stats.
Identities = 110/289 (38%), Positives = 164/289 (56%), Gaps = 3/289 (1%)
Query: 8 CLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVT 67
+ + + + AD CT VR AD GWTD+ ATTA+ +L LGYK ++LL++PVT
Sbjct: 11 LVAIWVGLLPVSAWADDCTEVRIADVGWTDVTATTALAGEVL-HDLGYKGRVELLSLPVT 69
Query: 68 FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKS 127
F L+N ID+F+G W P+ I P+L G + + NL+GA Y AV GIKS
Sbjct: 70 FMGLRNGDIDVFLGNWMPAQADAIQPHLNSGEVVDLGVNLEGALYTFAVPAYVSEAGIKS 129
Query: 128 YQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQ 187
D+A ++ E +I+GI PG+ N+ +L +I N + LK + L+E+SE ++RR
Sbjct: 130 AADLAAHQAEFKGRIHGIAPGSAANRMVLSLIQQNTYGLKDWTLVESSEQGMLGEVRRAV 189
Query: 188 RNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF--GEASVYTVVRSDYLDKCPNISRLL 245
+ VF W+PHP+NS L++ YL E G G + V+TV ++++CPN+++L
Sbjct: 190 ASGEWIVFFGWKPHPMNSQLSMQYLDDPLETWGPGGGASVVHTVANKGFVERCPNLAKLF 249
Query: 246 KNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTF 294
+N+KF+ A+E E+M IL+ K V R LR H D W GV
Sbjct: 250 QNMKFTTAIEGELMGRILDEKLSPGLVAREWLRAHADQAAAWTRGVRPA 298
>gi|187919222|ref|YP_001888253.1| choline ABC transporter periplasmic binding protein [Burkholderia
phytofirmans PsJN]
gi|187717660|gb|ACD18883.1| choline ABC transporter, periplasmic binding protein [Burkholderia
phytofirmans PsJN]
Length = 321
Score = 222 bits (565), Expect = 5e-56, Method: Composition-based stats.
Identities = 121/295 (41%), Positives = 184/295 (62%), Gaps = 5/295 (1%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKG 75
++A+D +C V FAD GWTDI +TTA+ S + E LGY+ + +VP++F LK+K
Sbjct: 27 PAFAQDPAACRAVHFADIGWTDITSTTALASTVFE-GLGYQPVTTVASVPISFAGLKSKQ 85
Query: 76 IDIFMGYWYPSLEKFIAPYLEEGSIKLV-AENLQGAKYMLAVNDVGFALGIKSYQDIAKY 134
+D+ +GYW+P EK IAP+++ SI+++ NL GAK AV + G+K++ DIAK+
Sbjct: 86 LDVSLGYWWPVQEKAIAPFVDSKSIQVLQPPNLTGAKATFAVPSYEYDAGLKTFADIAKH 145
Query: 135 KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAV 194
+ +L KIYGIEPG+ N I MI NN+F L GF+LIE+SE + R R V
Sbjct: 146 RDQLDGKIYGIEPGSSANAAIQKMIANNQFGLGGFKLIESSEAGMLVSVDRAIREKKWVV 205
Query: 195 FLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSV 252
FL WEPHP+N +++ YL G + + GEA VYT+ D+L +CPN +L+ N++FS
Sbjct: 206 FLGWEPHPMNIQIDMKYLTGSDGVFGPNDGEARVYTLTSPDFLTRCPNAGKLVSNLRFST 265
Query: 253 ALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
LEN +M+ ++ NK+ + L+ +P +L WL GV T+DG+D ++ ++
Sbjct: 266 QLENVVMQSVM-NKEKPADAAKAYLKKNPQVLDAWLAGVKTYDGKDGLPAVKAYL 319
>gi|70733543|ref|YP_257182.1| glycine betaine family ABC transporter substrate-binding protein
[Pseudomonas fluorescens Pf-5]
gi|68347842|gb|AAY95448.1| glycine/betaine family, ABC transporter, substrate-binding protein
[Pseudomonas fluorescens Pf-5]
Length = 305
Score = 222 bits (564), Expect = 6e-56, Method: Composition-based stats.
Identities = 107/307 (34%), Positives = 175/307 (57%), Gaps = 2/307 (0%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M ++ S + ADSC V+ AD GW+DIAAT A+T +L + +GYK I
Sbjct: 1 MQRLSTALTLGLLALGSASAWADSCETVKMADPGWSDIAATNAITGFLL-DGMGYKAKID 59
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
LAVP+TF LK+ +D+F+G W P+ + F ++ G + +A+NL+G ++ LAV D
Sbjct: 60 TLAVPITFGGLKDGRVDVFLGNWMPAQQGFHDKFVANGDVTQLAKNLEGTEFTLAVPDYV 119
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ G+ + D+ K+ + K+YGI G N + ++I +N+F+L ++LIE+SE A
Sbjct: 120 WEAGVHDFADLDKFADKFDKKLYGIGSGAPANLSLQEIIKSNQFNLGQWKLIESSEQAML 179
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+++ R + FL W PHP+N L + YL GGE+ G SVYT+ R Y CPN
Sbjct: 180 AEVSRATKKQRFITFLGWTPHPMNVQLKMRYLTGGEKYFG-ASGSVYTLTRKGYAQACPN 238
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPS 300
+ +LL N++F+ +EN +M ++N+K + ++ HP +L+ WL GV T D ++
Sbjct: 239 VGKLLGNLRFTQEMENSIMAAVVNSKLSNTEAAKAWIKAHPAVLEQWLEGVRTIDDKEAL 298
Query: 301 RQLERFM 307
++ +
Sbjct: 299 AAVKSRL 305
>gi|124381680|ref|YP_001024714.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia mallei
NCTC 10229]
gi|126455720|ref|YP_001075964.1| glycine betaine/L-proline ABC transporter periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
pseudomallei 1106a]
gi|226199087|ref|ZP_03794649.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
pseudomallei Pakistan 9]
gi|242311281|ref|ZP_04810298.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
pseudomallei 1106b]
gi|254174301|ref|ZP_04880963.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia mallei
ATCC 10399]
gi|254186741|ref|ZP_04893257.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
pseudomallei Pasteur 52237]
gi|254209000|ref|ZP_04915347.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia mallei
JHU]
gi|254263397|ref|ZP_04954262.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
pseudomallei 1710a]
gi|254301580|ref|ZP_04969024.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
pseudomallei 406e]
gi|254355723|ref|ZP_04972003.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia mallei
2002721280]
gi|124289700|gb|ABM98969.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia mallei
NCTC 10229]
gi|126229488|gb|ABN92901.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
pseudomallei 1106a]
gi|147750223|gb|EDK57293.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia mallei
JHU]
gi|148023816|gb|EDK82878.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia mallei
2002721280]
gi|157810750|gb|EDO87920.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
pseudomallei 406e]
gi|157934425|gb|EDO90095.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
pseudomallei Pasteur 52237]
gi|160695347|gb|EDP85317.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia mallei
ATCC 10399]
gi|225928862|gb|EEH24887.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
pseudomallei Pakistan 9]
gi|242134520|gb|EES20923.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
pseudomallei 1106b]
gi|254214399|gb|EET03784.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
pseudomallei 1710a]
Length = 328
Score = 222 bits (564), Expect = 7e-56, Method: Composition-based stats.
Identities = 128/291 (43%), Positives = 186/291 (63%), Gaps = 5/291 (1%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
DA +C VRFAD GWTDIAATT + S +L LGY + +VP+TF +K+K ID+F
Sbjct: 37 GDAPTCKAVRFADVGWTDIAATTGLASTML-AGLGYAPTKTIASVPITFAGIKSKQIDVF 95
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL 138
+GYW P+++ IAP+ + G+IK++A NL GAKY LAV D + G+KS+ DI KY +L
Sbjct: 96 LGYWSPTMDPMIAPFTKAGTIKVLAAPNLTGAKYTLAVPDYVYQGGLKSFADIQKYADKL 155
Query: 139 GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
+IYGIEPGN+GN I MI+ N+F L F+L+E+SE ++ R R+ VFL W
Sbjct: 156 NGRIYGIEPGNDGNALIKKMIDGNQFGLGKFKLVESSEAGMLVEVNRAIRDKQWIVFLGW 215
Query: 199 EPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALEN 256
EPHP+N + I YL GG+++ +GEA V T DY +CPN+++ + N++F+ ++EN
Sbjct: 216 EPHPMNVQMKIDYLSGGDDVFGPNYGEAKVLTATPPDYAARCPNVAKFVSNLQFTTSIEN 275
Query: 257 EMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+M I+ NK+D L+ +P L WL GVTTFDG+ ++ ++
Sbjct: 276 HVMLPIM-NKEDPNKAAAEWLKANPQSLDKWLAGVTTFDGKPGLPAVKHYL 325
>gi|323528466|ref|YP_004230618.1| choline ABC transporter periplasmic-binding protein [Burkholderia
sp. CCGE1001]
gi|323385468|gb|ADX57558.1| choline ABC transporter, periplasmic binding protein [Burkholderia
sp. CCGE1001]
Length = 324
Score = 222 bits (564), Expect = 7e-56, Method: Composition-based stats.
Identities = 124/296 (41%), Positives = 184/296 (62%), Gaps = 5/296 (1%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNK 74
++A+D +C V FAD GWTDI +TTA+ S + E LGY+ + +VP++F LK+K
Sbjct: 29 LPAFAQDPPACRAVHFADIGWTDITSTTALASTVFE-GLGYQPVTTVASVPISFAGLKSK 87
Query: 75 GIDIFMGYWYPSLEKFIAPYLEEGSIKLV-AENLQGAKYMLAVNDVGFALGIKSYQDIAK 133
+D+ +GYW+P EK IAP++E SI+++ NL GAK AV + G+K++ DIAK
Sbjct: 88 QLDVSLGYWWPVQEKAIAPFVESKSIEVLQPPNLTGAKATFAVPTYAYDAGLKTFADIAK 147
Query: 134 YKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPA 193
++ +L KIYGIEPG+ N I MI NKF L GF+LIE+SE + R R+
Sbjct: 148 HRDQLDGKIYGIEPGSSANAAIQKMIATNKFGLGGFKLIESSEAGMLVSVERAIRDKKWV 207
Query: 194 VFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFS 251
VFL WEPHP+N +++ YL G E + GEA VYT+ DYL +CPN +L+ N++FS
Sbjct: 208 VFLGWEPHPMNIQIDMKYLTGSEGVFGPNDGEARVYTLTSPDYLSRCPNAGKLVSNLRFS 267
Query: 252 VALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
LEN +M+ ++ NK+ + L+ +P +L WL GV T+DG+D ++ ++
Sbjct: 268 TQLENVVMQSVM-NKEKPADAAKAYLKKNPQVLDAWLAGVKTYDGKDGLPAVKAYL 322
>gi|91779268|ref|YP_554476.1| ABC glycine betaine transporter, periplasmic ligand binding protein
[Burkholderia xenovorans LB400]
gi|91691928|gb|ABE35126.1| ABC glycine betaine transporter, periplasmic ligand binding protein
[Burkholderia xenovorans LB400]
Length = 317
Score = 222 bits (564), Expect = 8e-56, Method: Composition-based stats.
Identities = 120/291 (41%), Positives = 182/291 (62%), Gaps = 5/291 (1%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
+D +C V FAD GWTDI +TTA+ S + E LGY+ + +VP++F LK+K +D+
Sbjct: 27 QDPAACRTVHFADIGWTDITSTTALASTVFE-GLGYQPVTTVASVPISFAGLKSKQLDVS 85
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLV-AENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL 138
+GYW+P EK IAP+++ SI+++ NL GAK AV + G+K++ DIAK++ +L
Sbjct: 86 LGYWWPVQEKAIAPFVDSKSIQVLQPPNLSGAKATFAVPSYEYDAGLKTFADIAKHRDQL 145
Query: 139 GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
KIYGIEPG+ N I MI +N+F L+GF+LIE+SE + R R VFL W
Sbjct: 146 DGKIYGIEPGSSANAAIQKMIASNQFGLRGFKLIESSEAGMLVSVDRAIREKKWVVFLGW 205
Query: 199 EPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALEN 256
EPHP+N +++ YL G E + GEA VYT+ D+L +CPN +L+ N++FS LEN
Sbjct: 206 EPHPMNIQIDMKYLTGSEGVFGPNDGEARVYTLTSPDFLTRCPNAGKLVSNLRFSTQLEN 265
Query: 257 EMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+M+ ++ NK+ R L+ +P +L WL GV T+DG++ ++ ++
Sbjct: 266 VVMQSVM-NKEKPADAARAYLKKNPQVLDAWLAGVKTYDGKEGLPAVKSYL 315
>gi|167031113|ref|YP_001666344.1| choline ABC transporter periplasmic binding protein [Pseudomonas
putida GB-1]
gi|166857601|gb|ABY96008.1| choline ABC transporter, periplasmic binding protein [Pseudomonas
putida GB-1]
Length = 307
Score = 222 bits (564), Expect = 8e-56, Method: Composition-based stats.
Identities = 105/309 (33%), Positives = 178/309 (57%), Gaps = 4/309 (1%)
Query: 1 MYKILAV--CLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M+K A L ++T + A C+ V+ AD GW+DIA+T A+ ++LE LGY+
Sbjct: 1 MHKFSAAVFALAISTATAHAADSDAQCSTVKMADPGWSDIASTNAVARLLLES-LGYQVK 59
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
I LAVP+ + LK+ +D F+G W P+ + F ++ G ++ ++ NL+G ++ LAV D
Sbjct: 60 IDSLAVPIIYGGLKDGRVDAFLGNWMPAQQGFHDKFIANGDVQQLSRNLEGTEFTLAVPD 119
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ G+K + D+ K+ + K+YGI G N + ++I+ N+F+L ++L+E+SE A
Sbjct: 120 YVWNAGVKDFADLQKHADQFDKKLYGIGSGAPANLSLKEIIDKNEFNLGQWKLVESSEQA 179
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+Q+ R + FL W PHP+N L +HYL GGE+ G + VYT+ R Y C
Sbjct: 180 MLAQVDRAVKKQQFITFLGWTPHPMNVKLKMHYLTGGEKWFGS-KGEVYTLTRKGYPQAC 238
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN ++LL N+KF++ +EN +M +++ K + ++T+P++L WL GVTT +
Sbjct: 239 PNAAKLLGNLKFTLDMENSIMAEVVDKKISFDDAAKAWVKTYPEVLDGWLAGVTTKADGN 298
Query: 299 PSRQLERFM 307
++ +
Sbjct: 299 ALEAVKAKL 307
>gi|107025672|ref|YP_623183.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia cenocepacia AU 1054]
gi|116693146|ref|YP_838679.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia cenocepacia HI2424]
gi|105895046|gb|ABF78210.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia cenocepacia AU 1054]
gi|116651146|gb|ABK11786.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia cenocepacia HI2424]
Length = 317
Score = 222 bits (564), Expect = 8e-56, Method: Composition-based stats.
Identities = 123/300 (41%), Positives = 186/300 (62%), Gaps = 5/300 (1%)
Query: 11 LTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRS 70
T + +A +C VRFAD GWTDI +TTA+ S + E LGYK + +VP++F
Sbjct: 18 AFTHAALAETEATTCRTVRFADIGWTDITSTTALASTVFEA-LGYKPTTTIASVPISFAG 76
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLV-AENLQGAKYMLAVNDVGFALGIKSYQ 129
LK+K +D+ +GYW+P +K + P+L+ SI +V NL GAK LAV + G+K++
Sbjct: 77 LKSKQLDVSLGYWWPVQQKQLQPFLDSKSINVVEPPNLSGAKATLAVPSYEYQAGLKTFD 136
Query: 130 DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRN 189
DIAK++ EL KIYGIEPG+ N I MI+ N++ L GF+L+E+SE + R R+
Sbjct: 137 DIAKHRAELDGKIYGIEPGSSANATIQKMIDTNQYGLGGFKLVESSEAGMLVTVERAVRD 196
Query: 190 NIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKN 247
VFL WEPHP+N L+++YL GG+ +GEA VYT+ D++ +CPN +L+ N
Sbjct: 197 KKWVVFLGWEPHPMNIQLSMNYLSGGDAAFGPNYGEARVYTLTAPDFIARCPNAGKLVTN 256
Query: 248 IKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
++FS LEN++M+ ++ NK + L+ +P +L WL GV TFDG+D ++ ++
Sbjct: 257 LRFSTQLENQLMQSVM-NKTKPAEAAKAYLKKNPQVLDPWLAGVKTFDGKDGLPAVKAYL 315
>gi|115380392|ref|ZP_01467388.1| ABC-type proline/glycine betaine transport system, periplasmic
component [Stigmatella aurantiaca DW4/3-1]
gi|115362604|gb|EAU61843.1| ABC-type proline/glycine betaine transport system, periplasmic
component [Stigmatella aurantiaca DW4/3-1]
Length = 586
Score = 222 bits (564), Expect = 8e-56, Method: Composition-based stats.
Identities = 110/289 (38%), Positives = 164/289 (56%), Gaps = 3/289 (1%)
Query: 8 CLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVT 67
+ + + + AD CT VR AD GWTD+ ATTA+ +L LGYK ++LL++PVT
Sbjct: 2 LVAIWVGLLPVSAWADDCTEVRIADVGWTDVTATTALAGEVL-HDLGYKGRVELLSLPVT 60
Query: 68 FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKS 127
F L+N ID+F+G W P+ I P+L G + + NL+GA Y AV GIKS
Sbjct: 61 FMGLRNGDIDVFLGNWMPAQADAIQPHLNSGEVVDLGVNLEGALYTFAVPAYVSEAGIKS 120
Query: 128 YQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQ 187
D+A ++ E +I+GI PG+ N+ +L +I N + LK + L+E+SE ++RR
Sbjct: 121 AADLAAHQAEFKGRIHGIAPGSAANRMVLSLIQQNTYGLKDWTLVESSEQGMLGEVRRAV 180
Query: 188 RNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF--GEASVYTVVRSDYLDKCPNISRLL 245
+ VF W+PHP+NS L++ YL E G G + V+TV ++++CPN+++L
Sbjct: 181 ASGEWIVFFGWKPHPMNSQLSMQYLDDPLETWGPGGGASVVHTVANKGFVERCPNLAKLF 240
Query: 246 KNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTF 294
+N+KF+ A+E E+M IL+ K V R LR H D W GV
Sbjct: 241 QNMKFTTAIEGELMGRILDEKLSPGLVAREWLRAHADQAAAWTRGVRPA 289
>gi|83716699|ref|YP_439166.1| glycine betaine/L-proline ABC transporter periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
thailandensis E264]
gi|167577607|ref|ZP_02370481.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
thailandensis TXDOH]
gi|167615752|ref|ZP_02384387.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
thailandensis Bt4]
gi|257142286|ref|ZP_05590548.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
thailandensis E264]
gi|83650524|gb|ABC34588.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
thailandensis E264]
Length = 316
Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats.
Identities = 129/291 (44%), Positives = 185/291 (63%), Gaps = 5/291 (1%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
D +C VRFAD GWTDIAATT + S +L LGY + +VP+TF +K+K ID+F
Sbjct: 25 GDPPTCKAVRFADVGWTDIAATTGLASTML-AGLGYAPTKTIASVPITFAGIKSKQIDVF 83
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL 138
+GYW P+++ IAP+ + G+IK++A NL GAKY LAV D + G+KS+ DI KY +L
Sbjct: 84 LGYWSPTMDPMIAPFTKAGTIKVLATPNLTGAKYTLAVPDYVYQGGLKSFADIQKYADKL 143
Query: 139 GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
KIYGIEPGN+GN I MI+ N+F L F+L+E+SE ++ R R+ VFL W
Sbjct: 144 NGKIYGIEPGNDGNALIKKMIDANQFGLGKFKLVESSEAGMLVEVNRAIRDKQWIVFLGW 203
Query: 199 EPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALEN 256
EPHP+N + I YL GG+++ +GEA V T DY +CPN+++ + N++FS ++EN
Sbjct: 204 EPHPMNVQMKIDYLSGGDDVFGPNYGEAKVLTATPPDYAARCPNVAKFVSNLQFSTSIEN 263
Query: 257 EMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+M I+ NK+D L+ +P L WL GVTTFDG+ ++ ++
Sbjct: 264 HVMLPIM-NKEDPNKAAAEWLKANPQSLDKWLAGVTTFDGKPGLPAVKHYL 313
>gi|83717137|ref|YP_440048.1| glycine betaine/L-proline ABC transporter periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
thailandensis E264]
gi|83650962|gb|ABC35026.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
thailandensis E264]
Length = 379
Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats.
Identities = 109/286 (38%), Positives = 170/286 (59%), Gaps = 3/286 (1%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWY 84
C VR A GWTDI AT A+ V+L+ LGY+ ++ L+VP+T++ LK ID+F+G W
Sbjct: 93 CRDVRMAGPGWTDIEATNALAGVVLKA-LGYRQSVSNLSVPITYQGLKKGQIDVFLGNWM 151
Query: 85 PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYG 144
P+ + P+++ +I ++ NL AK+ LAV D A G+ S+ D+AKY + GAKIYG
Sbjct: 152 PAQAPLVKPFVDARTIDVLHANLSHAKFTLAVPDYVAAAGVHSFADLAKYAQRFGAKIYG 211
Query: 145 IEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPIN 204
IEPG NQ I M+ + ++L+E+SE +Q+ R R + VFL WEPH +N
Sbjct: 212 IEPGAPANQSISRMLADKALGPANWQLVESSETGMLTQVERAVREHQWIVFLGWEPHLMN 271
Query: 205 SDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI 262
+ ++ YL GG+ +G A+V TV R+D+ ++C N++RL + + F+V LEN M+ +
Sbjct: 272 TKFHLVYLSGGDAYFGPNYGGATVNTVARADFANQCTNLTRLFRQMTFTVDLENGMIAAM 331
Query: 263 LNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
L +K+ + LR +P L+ WL GVTT +G + ++
Sbjct: 332 LRDKRSAVDAAQHALRANPSLVDAWLDGVTTANGAPGLPAVRAALD 377
>gi|53717244|ref|YP_105328.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia mallei
ATCC 23344]
gi|53722450|ref|YP_111435.1| glycine betaine/L-proline-binding protein ABC transporter component
[Burkholderia pseudomallei K96243]
gi|76818565|ref|YP_335606.1| glycine betaine/L-proline ABC transporter periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
pseudomallei 1710b]
gi|126447537|ref|YP_001079049.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia mallei
NCTC 10247]
gi|167724044|ref|ZP_02407280.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
pseudomallei DM98]
gi|167743014|ref|ZP_02415788.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
pseudomallei 14]
gi|167820186|ref|ZP_02451866.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
pseudomallei 91]
gi|167828561|ref|ZP_02460032.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
pseudomallei 9]
gi|167850019|ref|ZP_02475527.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
pseudomallei B7210]
gi|167898628|ref|ZP_02486029.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
pseudomallei 7894]
gi|167906969|ref|ZP_02494174.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
pseudomallei NCTC 13177]
gi|167915328|ref|ZP_02502419.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
pseudomallei 112]
gi|167923162|ref|ZP_02510253.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
pseudomallei BCC215]
gi|254193774|ref|ZP_04900206.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
pseudomallei S13]
gi|52212864|emb|CAH38898.1| putative glycine betaine/L-proline-binding protein ABC transporter
component [Burkholderia pseudomallei K96243]
gi|52423214|gb|AAU46784.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia mallei
ATCC 23344]
gi|76583038|gb|ABA52512.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
pseudomallei 1710b]
gi|126240391|gb|ABO03503.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia mallei
NCTC 10247]
gi|169650525|gb|EDS83218.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
pseudomallei S13]
Length = 316
Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats.
Identities = 128/291 (43%), Positives = 186/291 (63%), Gaps = 5/291 (1%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
DA +C VRFAD GWTDIAATT + S +L LGY + +VP+TF +K+K ID+F
Sbjct: 25 GDAPTCKAVRFADVGWTDIAATTGLASTML-AGLGYAPTKTIASVPITFAGIKSKQIDVF 83
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL 138
+GYW P+++ IAP+ + G+IK++A NL GAKY LAV D + G+KS+ DI KY +L
Sbjct: 84 LGYWSPTMDPMIAPFTKAGTIKVLAAPNLTGAKYTLAVPDYVYQGGLKSFADIQKYADKL 143
Query: 139 GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
+IYGIEPGN+GN I MI+ N+F L F+L+E+SE ++ R R+ VFL W
Sbjct: 144 NGRIYGIEPGNDGNALIKKMIDGNQFGLGKFKLVESSEAGMLVEVNRAIRDKQWIVFLGW 203
Query: 199 EPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALEN 256
EPHP+N + I YL GG+++ +GEA V T DY +CPN+++ + N++F+ ++EN
Sbjct: 204 EPHPMNVQMKIDYLSGGDDVFGPNYGEAKVLTATPPDYAARCPNVAKFVSNLQFTTSIEN 263
Query: 257 EMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+M I+ NK+D L+ +P L WL GVTTFDG+ ++ ++
Sbjct: 264 HVMLPIM-NKEDPNKAAAEWLKANPQSLDKWLAGVTTFDGKPGLPAVKHYL 313
>gi|224827216|ref|ZP_03700311.1| choline ABC transporter, periplasmic binding protein [Lutiella
nitroferrum 2002]
gi|224600609|gb|EEG06797.1| choline ABC transporter, periplasmic binding protein [Lutiella
nitroferrum 2002]
Length = 313
Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats.
Identities = 130/313 (41%), Positives = 197/313 (62%), Gaps = 8/313 (2%)
Query: 1 MY---KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M K L +CL + A + +SC VRFAD GWTDIAATT + +V+ + LGY
Sbjct: 1 MKLDIKPLVLCLSSLLALPALAAEPESCRNVRFADVGWTDIAATTGLATVVFK-GLGYVP 59
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLV-AENLQGAKYMLAV 116
+ + + P+ F LK+K +D+++GYW PS I P+++ S++++ NL GAKY LAV
Sbjct: 60 SKTIASEPIVFAGLKSKQLDVYLGYWDPSQTPAITPFVQSKSLQVLPGANLDGAKYTLAV 119
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
G+K++ DIA+++KEL KIYGIEPG++GN +I MI++N+F LKGF+LIE+SE
Sbjct: 120 PSYAAERGLKTFADIARFRKELDGKIYGIEPGSQGNAQIKKMIDSNEFGLKGFKLIESSE 179
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDY 234
+ + R P VFL+WEPHP+N + + YL GG++ +G + VYTV+ +DY
Sbjct: 180 AGMLVEATKAFRQKRPIVFLAWEPHPMNFLMKLTYLSGGDKQFGPNYGGSKVYTVLANDY 239
Query: 235 LDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTF 294
+CPN S+L+ N KF++ +EN +M I+ NK D + L+ +P +L WL GVTTF
Sbjct: 240 QQRCPNASKLVGNFKFTLDMENRVMDPIM-NKVDPASAAKQWLQRNPQVLTAWLDGVTTF 298
Query: 295 DGQDPSRQLERFM 307
DG+ ++ ++
Sbjct: 299 DGKPGLDAVKSYL 311
>gi|186472149|ref|YP_001859491.1| choline ABC transporter, periplasmic binding protein [Burkholderia
phymatum STM815]
gi|184194481|gb|ACC72445.1| choline ABC transporter, periplasmic binding protein [Burkholderia
phymatum STM815]
Length = 321
Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats.
Identities = 115/306 (37%), Positives = 181/306 (59%), Gaps = 3/306 (0%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
++ + S+A + SCT VR AD GWTDI AT A+ V+L+ LGY+ N+ L+
Sbjct: 14 LIFSAFGMAVTGSSHAAEPQSCTQVRMADPGWTDIDATNAVAGVLLKA-LGYQQNVSNLS 72
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
VP+T++ LK ID+F+G W P+ + P+++E SI ++ NL AK+ LAV D A
Sbjct: 73 VPITYQGLKKGQIDVFLGNWMPAQGPLVKPFVDEHSIDVLHANLTNAKFTLAVPDYVAAA 132
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
G+ S+ D+ K+ + KIYGIEPG NQ I MI + F L ++++E+SE +Q+
Sbjct: 133 GVHSFADLVKHADQFNGKIYGIEPGAPANQNIKKMIADKAFGLGDWKVVESSETGMLTQV 192
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNI 241
R R+ VFL+WEPH +N+ ++ YL GG+ +G A+V TV R + +C N+
Sbjct: 193 ERAVRDKQWIVFLAWEPHLMNTKFHLTYLSGGDAYFGPNYGGATVNTVTRPGFAGQCTNL 252
Query: 242 SRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSR 301
++L + + F+V +EN+++ +L NK D T L+ +P LL WL GVTT +G D +
Sbjct: 253 AKLFQQMTFNVDMENQIIANVLQNKVDINTAALTALKGNPALLNTWLKGVTTTNGADGLQ 312
Query: 302 QLERFM 307
++ +
Sbjct: 313 AVQTQL 318
>gi|167840041|ref|ZP_02466725.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
thailandensis MSMB43]
Length = 316
Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats.
Identities = 128/291 (43%), Positives = 184/291 (63%), Gaps = 5/291 (1%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
D +C VRFAD GWTDIAATT + S +L LGY + +VP+TF +K+K ID+F
Sbjct: 25 GDPPTCKAVRFADVGWTDIAATTGLASTML-AGLGYAPTKTIASVPITFAGIKSKQIDVF 83
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL 138
+GYW P+++ IAP+ + G+IK++A NL GAKY LAV D + G+KS+ DI KY +L
Sbjct: 84 LGYWSPTMDPMIAPFTKAGTIKVLATPNLTGAKYTLAVPDYVYQGGLKSFADIQKYADKL 143
Query: 139 GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
+IYGIEPGN+GN I MI+ N+F L F+L+E+SE ++ R R+ VFL W
Sbjct: 144 NGRIYGIEPGNDGNALIKKMIDGNQFGLGKFKLVESSEAGMLVEVNRAIRDKQWIVFLGW 203
Query: 199 EPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALEN 256
EPHP+N + I YL GG+++ +GEA V T DY +CPN+++ + N++FS ++EN
Sbjct: 204 EPHPMNVQMKIDYLSGGDDVFGPNYGEAKVLTATPPDYAARCPNVAKFVSNLQFSTSIEN 263
Query: 257 EMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+M I+ NK+D L+ +P L WL GVTTFDG+ + ++
Sbjct: 264 HVMLPIM-NKEDPNKAAAAWLKANPQSLDKWLAGVTTFDGKPGLPAVRHYL 313
>gi|187919779|ref|YP_001888810.1| choline ABC transporter periplasmic binding protein [Burkholderia
phytofirmans PsJN]
gi|187718217|gb|ACD19440.1| choline ABC transporter, periplasmic binding protein [Burkholderia
phytofirmans PsJN]
Length = 316
Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats.
Identities = 126/314 (40%), Positives = 182/314 (57%), Gaps = 8/314 (2%)
Query: 1 MYKIL-----AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M K+ V L + + A + SCT V A GWTDI AT AMT V+L+ LGY
Sbjct: 1 MKKLFKQAVTGVALLCAAATFASAAEPQSCTQVNMAGPGWTDIDATNAMTGVLLKA-LGY 59
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
K N+ L+VP+T++ LK ID+F+G W P+ + P+ EE SI++V NL AK+ LA
Sbjct: 60 KQNVANLSVPITYQGLKKGQIDVFLGNWMPAQAPVVKPFEEEKSIEVVHPNLSNAKFTLA 119
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
V D A GI S+ D+AK + +KIYGIEPG NQ I M+++ F L ++L+E+S
Sbjct: 120 VPDYVAAAGIHSFDDLAKNADKFDSKIYGIEPGAPANQNIKKMVDDKAFGLGNWKLVESS 179
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSD 233
E +Q+ R R+ VFL+WEPH +N+ + YL GG++ +G A+V TV RS
Sbjct: 180 ETGMLTQVERAVRDKKWIVFLAWEPHLMNTKFKLTYLDGGDKYFGPNYGGATVNTVARSG 239
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
Y +CPN+ RL K + F+V LEN ++ +L K L+ HP+LLK+WL GV T
Sbjct: 240 YAAQCPNVGRLFKQLTFNVDLENGVITEVLEKKTGVDVAAAEALKRHPELLKSWLDGVNT 299
Query: 294 FDGQDPSRQLERFM 307
G + + ++ +
Sbjct: 300 ASGANGLQAVQTAL 313
>gi|296156399|ref|ZP_06839237.1| choline ABC transporter, periplasmic binding protein [Burkholderia
sp. Ch1-1]
gi|295892998|gb|EFG72778.1| choline ABC transporter, periplasmic binding protein [Burkholderia
sp. Ch1-1]
Length = 317
Score = 220 bits (559), Expect = 3e-55, Method: Composition-based stats.
Identities = 119/291 (40%), Positives = 182/291 (62%), Gaps = 5/291 (1%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
+D +C V FAD GWTDI +TTA+ S + E LGY+ + +VP++F LK+K +D+
Sbjct: 27 QDPAACRTVHFADIGWTDITSTTALASTVFE-GLGYQPVTTVASVPISFAGLKSKQLDVS 85
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLV-AENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL 138
+GYW+P EK IAP+++ SI+++ NL GAK AV + G+K++ DIAK++++L
Sbjct: 86 LGYWWPVQEKAIAPFVDSKSIQVLQPPNLTGAKATFAVPSYEYDAGLKTFADIAKHREQL 145
Query: 139 GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
KIYGIEPG+ N I MI +N+F L GF+LIE+SE + R R VFL W
Sbjct: 146 DGKIYGIEPGSSANAAIQKMIASNQFGLGGFKLIESSEAGMLVSVDRAIREKKWVVFLGW 205
Query: 199 EPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALEN 256
EPHP+N +++ YL G E + GEA VYT+ D+L +CPN +L+ N++FS LEN
Sbjct: 206 EPHPMNIQIDMKYLTGSEGVFGPNDGEARVYTLTSPDFLTRCPNAGKLVSNLRFSTQLEN 265
Query: 257 EMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+M+ ++ NK+ + L+ +P +L WL GV T+DG++ ++ ++
Sbjct: 266 VVMQSVM-NKEKPADAAKAYLKKNPQILDAWLAGVKTYDGKEGLPAVKAYL 315
>gi|78061438|ref|YP_371346.1| ABC proline/glycine betaine transporter, periplasmic ligand binding
protein [Burkholderia sp. 383]
gi|77969323|gb|ABB10702.1| ABC proline/glycine betaine transporter, periplasmic ligand binding
protein [Burkholderia sp. 383]
Length = 321
Score = 220 bits (559), Expect = 3e-55, Method: Composition-based stats.
Identities = 109/302 (36%), Positives = 176/302 (58%), Gaps = 3/302 (0%)
Query: 10 FLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFR 69
L T ++A D +C V+ A GWTDI AT AM V+L+ LGY+ ++ L+VP+T++
Sbjct: 20 CLMTTQAAHAADPQTCGDVKMAAPGWTDIDATNAMAGVVLKA-LGYRQDVANLSVPITYQ 78
Query: 70 SLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQ 129
LK +D+F+G W P+ + P+++E SI ++ NL GAK+ LAV D A G+ ++
Sbjct: 79 GLKKGQVDVFLGNWMPAQAPLVKPFVDEKSIDVLHANLSGAKFTLAVPDYVAAAGVHTFA 138
Query: 130 DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRN 189
D+A+Y G KIYGIEPG NQ I +++++ + L+E+SE +Q+ R R+
Sbjct: 139 DLARYADRFGGKIYGIEPGAPANQNIKRLLSDHALGPANWSLVESSETGMLTQVERAVRD 198
Query: 190 NIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKN 247
VFL+WEPH +N+ ++ YL GG+ +G A+V TV R+ + +C N++RL +
Sbjct: 199 KRWIVFLAWEPHLMNTKFHLTYLSGGDAYFGPNYGGATVNTVTRTGFAGQCANLARLFRQ 258
Query: 248 IKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ FSV +EN M+ +L++K + L+ P L+ WL GVTT G + +
Sbjct: 259 MTFSVDVENRMIADMLDHKTSPALAAQHALKADPALVAGWLDGVTTAAGAPGLPAVRAAL 318
Query: 308 NN 309
++
Sbjct: 319 DS 320
>gi|167578608|ref|ZP_02371482.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
thailandensis TXDOH]
Length = 336
Score = 220 bits (559), Expect = 3e-55, Method: Composition-based stats.
Identities = 109/286 (38%), Positives = 169/286 (59%), Gaps = 3/286 (1%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWY 84
C VR A GWTDI AT A+ V+L+ LGY+ ++ L+VP+T++ LK ID+F+G W
Sbjct: 50 CRDVRMAGPGWTDIEATNALAGVVLKA-LGYRQSVSNLSVPITYQGLKKGQIDVFLGNWM 108
Query: 85 PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYG 144
P+ + P+++ +I ++ NL AK+ LAV D A G+ S+ D+AKY + GAKIYG
Sbjct: 109 PAQAPLVKPFVDARTIDVLHANLSNAKFTLAVPDYVAAAGVHSFADLAKYAQRFGAKIYG 168
Query: 145 IEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPIN 204
IEPG NQ I M+ + ++L+E+SE +Q+ R R VFL WEPH +N
Sbjct: 169 IEPGAPANQSISRMLADKALGPANWQLVESSETGMLTQVERAVRERQWIVFLGWEPHLMN 228
Query: 205 SDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI 262
+ ++ YL GG+ +G A+V TV R+D+ ++C N++RL + + F+V LEN M+ +
Sbjct: 229 TKFHLVYLSGGDAYFGPNYGGATVNTVARADFANQCTNLARLFRQMTFTVDLENGMIAAM 288
Query: 263 LNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
L +K+ + LR +P L+ WL GVTT +G + ++
Sbjct: 289 LRDKRSAVDAAQHALRANPSLVDAWLDGVTTANGAPGLPAVRAALD 334
>gi|167584655|ref|ZP_02377043.1| choline ABC transporter, periplasmic binding protein [Burkholderia
ubonensis Bu]
Length = 321
Score = 220 bits (559), Expect = 3e-55, Method: Composition-based stats.
Identities = 107/301 (35%), Positives = 172/301 (57%), Gaps = 3/301 (0%)
Query: 10 FLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFR 69
L ++A + +C VR A GWTDI AT AM V+L+ LGY+ ++ L+VP+T++
Sbjct: 20 CLIGAQAAHAAEPQACRDVRMAGPGWTDIDATNAMAGVVLKA-LGYRQDVSNLSVPITYQ 78
Query: 70 SLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQ 129
LK +D+F+G W P+ + P+++ +I ++ NL GAK+ LAV D A G++++
Sbjct: 79 GLKKGQVDVFLGNWMPAQGPLVKPFVDARAIDVLHANLSGAKFTLAVPDYVAAAGVRTFA 138
Query: 130 DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRN 189
D+ +Y KIYGIEPG NQ I M+ ++ + L+E+SE +Q+ R R+
Sbjct: 139 DLERYASRFDGKIYGIEPGAPANQNIRRMLADHALGPANWALVESSETGMLTQVERAVRD 198
Query: 190 NIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKN 247
VFL+WEPH +N+ ++ YL GG+ +G A+V TV R+ + D+C N++RL +
Sbjct: 199 RRWIVFLAWEPHLMNTKFHLTYLAGGDAYFGPNYGGATVNTVARAGFADQCANLARLFRQ 258
Query: 248 IKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ F+V +EN M+ +LNNK + L+ P L+ WL GVTT G + +
Sbjct: 259 MTFTVDIENRMIADMLNNKTPAPLAAQHALKAEPSLVAGWLDGVTTAAGAPGLPAVRAAL 318
Query: 308 N 308
+
Sbjct: 319 D 319
>gi|312963518|ref|ZP_07778000.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas fluorescens WH6]
gi|311282324|gb|EFQ60923.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas fluorescens WH6]
Length = 314
Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats.
Identities = 114/304 (37%), Positives = 180/304 (59%), Gaps = 5/304 (1%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
+LA+ + +A DA+SC VR WTD+ AT+AMT V+L + LGYKT +
Sbjct: 9 VLALSASAILSTSVFAADAESCRNVRMGVVNWTDVIATSAMTQVLL-DGLGYKTKQTSAS 67
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAVNDVGFA 122
+ F ++++ +D+F+GYW P + + I+P+++ +K++ +L+ A+ LAV
Sbjct: 68 QQIIFAGIRDQRLDLFLGYWNPLMTQTISPFVDAKQVKVLDKPSLEDARATLAVPTYLAD 127
Query: 123 LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
G+K++ DIA+++KELG KIYGIEPG+ N +I MI N+F L F+L+E+SE +
Sbjct: 128 KGLKTFADIARFEKELGGKIYGIEPGSGANTQIKAMIAKNQFGLGKFQLVESSEAGMLAA 187
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPN 240
+ R R VF W PHP+N ++ + YL G E+ G A+V+TV Y ++CPN
Sbjct: 188 VDRAVRRKEAVVFFGWAPHPMNVNVAMTYLSGSEDALGPNEGMATVWTVTSPTYAEQCPN 247
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPS 300
+ +LL N+ F+ A E+ MM+ +L + +D R L+ HP WL GVTTFDG+ +
Sbjct: 248 VHKLLTNLTFTAADESRMMQPLL-DHKDALESARQWLKEHPQDQARWLEGVTTFDGKPAA 306
Query: 301 RQLE 304
L+
Sbjct: 307 ANLQ 310
>gi|171315431|ref|ZP_02904668.1| choline ABC transporter, periplasmic binding protein [Burkholderia
ambifaria MEX-5]
gi|171099431|gb|EDT44166.1| choline ABC transporter, periplasmic binding protein [Burkholderia
ambifaria MEX-5]
Length = 322
Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats.
Identities = 107/295 (36%), Positives = 174/295 (58%), Gaps = 3/295 (1%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKG 75
++A D +C V+ A GWTDI AT AM V+L+ LGY+ ++ L+VP+T++ LK
Sbjct: 27 PAHAADPQTCRDVKMAAPGWTDIDATNAMAGVVLKA-LGYRQDVANLSVPITYQGLKKGQ 85
Query: 76 IDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK 135
+D+F+G W P+ + P+++E SI ++ NL GAK+ LAV D A G+ ++ D+A+Y
Sbjct: 86 VDVFLGNWMPAQAPLVKPFVDEKSIDVLHANLSGAKFTLAVPDYVAAAGVHTFADLARYA 145
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
G +IYGIEPG NQ I M++++ + L+E+SE +Q+ R R+ VF
Sbjct: 146 DRFGDRIYGIEPGAPANQNIKRMLSDHALGPANWSLVESSETGMLTQVERAVRDKRWIVF 205
Query: 196 LSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVA 253
L+WEPH +N+ ++ YL GG+ +G A+V TV R + +C N++RL + + FSV
Sbjct: 206 LAWEPHLMNTKFHLTYLSGGDAYFGPNYGGATVNTVTRPGFAGQCANLARLFRQMTFSVD 265
Query: 254 LENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
+EN ++ +L+NK + +L+ P L++ WL GVTT G + ++
Sbjct: 266 VENRIIADMLDNKTSPALAAQRLLKADPALVEGWLDGVTTASGTPALPAVRAALD 320
>gi|304392281|ref|ZP_07374223.1| hypothetical protein R2A130_0957 [Ahrensia sp. R2A130]
gi|303296510|gb|EFL90868.1| hypothetical protein R2A130_0957 [Ahrensia sp. R2A130]
Length = 317
Score = 219 bits (558), Expect = 4e-55, Method: Composition-based stats.
Identities = 138/304 (45%), Positives = 196/304 (64%), Gaps = 7/304 (2%)
Query: 1 MYKILAVCLFLTTFSISYARDA----DSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
+ + + ++S + A SC+ V F+D GWTDI ATTA T+ +L+ LGY+
Sbjct: 4 LKTLALTAALSASLAMSVSTSALAEDASCSTVTFSDVGWTDITATTAATTEVLKA-LGYE 62
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
T IK+L+VPVT+ SL +D+F+G W P++E IA Y E+GS++ V ENL+GAKY LAV
Sbjct: 63 TEIKVLSVPVTYVSLAKGDVDVFLGNWMPTMEGDIAKYREDGSVETVRENLEGAKYTLAV 122
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
N +GIK++ DIAK K L IYGIE GN+GN+ I DMI+ N F L+GF+++E+SE
Sbjct: 123 NKAAADMGIKTFADIAKNKDALDGSIYGIEAGNDGNRLIQDMIDKNAFGLEGFKVVESSE 182
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF--GEASVYTVVRSDY 234
+Q R + P VFL WEPHP+N++L + YL GG++ G G A+VYT V Y
Sbjct: 183 AGMLAQATRASKKGEPIVFLGWEPHPMNANLEMSYLEGGDDFFGPNLGGATVYTNVSKGY 242
Query: 235 LDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTF 294
++KC N+ LLKN+KFS+A+ENE+M ILN+ + ++ + D++ WL GVTT
Sbjct: 243 VEKCSNVGALLKNLKFSLAMENEIMGAILNDGTEPSAAALAWMKANKDMVMGWLDGVTTK 302
Query: 295 DGQD 298
DG D
Sbjct: 303 DGGD 306
>gi|170695637|ref|ZP_02886780.1| choline ABC transporter, periplasmic binding protein [Burkholderia
graminis C4D1M]
gi|170139436|gb|EDT07621.1| choline ABC transporter, periplasmic binding protein [Burkholderia
graminis C4D1M]
Length = 317
Score = 219 bits (557), Expect = 4e-55, Method: Composition-based stats.
Identities = 123/314 (39%), Positives = 181/314 (57%), Gaps = 8/314 (2%)
Query: 1 MYKIL-----AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M K+ V L S + A + SC V A GWTDI AT AMT V+L+ LGY
Sbjct: 2 MNKLFKQAMSGVALLCAAASFASAAEPQSCMQVNMAGPGWTDIDATNAMTGVVLKA-LGY 60
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
K + L+VP+T++ LK ID+F+G W P+ + P+ EE SI +V NL AK+ LA
Sbjct: 61 KQKVANLSVPITYQGLKKGQIDVFLGNWMPAQAPVVKPFEEEKSIVVVHPNLSNAKFTLA 120
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
V D A G+ S+ D+AK + +KIYGIEPG NQ I M+++ F L ++++E+S
Sbjct: 121 VPDYVAAAGVHSFADLAKNADKFDSKIYGIEPGAPANQNIKKMVDDKAFGLDSWKVVESS 180
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSD 233
E +Q+ R R VFL+WEPH +N+ + YL GG++ +G A+V TV RS
Sbjct: 181 ETGMLTQVERAVREKKWIVFLAWEPHVMNTKFKLSYLDGGDKYFGPNYGGATVNTVARSG 240
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
Y ++CPN+ RL + + F+V LEN ++ +L K L+ HPDLLK+WL GV+T
Sbjct: 241 YAEQCPNVGRLFRQLTFNVDLENGVITEVLEKKTSVDVAATEALKRHPDLLKSWLDGVST 300
Query: 294 FDGQDPSRQLERFM 307
+G + + ++ +
Sbjct: 301 ANGANGLQAVQTAL 314
>gi|325293430|ref|YP_004279294.1| glycine/betaine ABC transporter substrate-binding protein
[Agrobacterium sp. H13-3]
gi|325061283|gb|ADY64974.1| glycine/betaine ABC transporter, substrate binding protein
[Agrobacterium sp. H13-3]
Length = 312
Score = 219 bits (557), Expect = 4e-55, Method: Composition-based stats.
Identities = 122/313 (38%), Positives = 182/313 (58%), Gaps = 9/313 (2%)
Query: 1 MYK---ILAVCLFLTTFSISY-ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
M K + + + LTT S A DA++C VR A+ GW D+A TT + +L+ LGY+
Sbjct: 1 MKKWAGVFSAAMVLTTVGTSALASDAETCKVVRLAEPGWNDLAFTTGIAMSLLKS-LGYE 59
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+LL + V + SLK+K +D+F+GYW P++ + PY E+GS++ V NL GAKY AV
Sbjct: 60 PQSQLLGIDVIYTSLKSKDLDVFLGYWNPAMVNYYKPYKEDGSVEKVRTNLVGAKYTFAV 119
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ G++ + D+ K+ + +K+YGIEPG NQ +LD +N+ L + ++E+SE
Sbjct: 120 PTYVWDAGVRDFSDLQKFADKFDSKLYGIEPG--SNQLMLDAVNDPALGLHNWEVVESSE 177
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDY 234
SQ+ R RN VF W PHP+NS +I YL GG++ FG A+V T VR Y
Sbjct: 178 QGMLSQVTRFARNKSFIVFQGWAPHPMNSKFDIKYLTGGDKFYGPDFGAATVDTQVRKGY 237
Query: 235 LDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTF 294
L +CPN+++LL N+ F V EN+ M I+N + R ++ P L WL GV+TF
Sbjct: 238 LQECPNVAKLLDNLAFDVEYENKGMDYIMNGGMSPEDAARQAIKDEPQRLDAWLKGVSTF 297
Query: 295 DGQDPSRQLERFM 307
DGQD ++ +
Sbjct: 298 DGQDGLTAVKAGI 310
>gi|153010645|ref|YP_001371859.1| substrate-binding region of ABC-type glycine betaine transport
system [Ochrobactrum anthropi ATCC 49188]
gi|151562533|gb|ABS16030.1| Substrate-binding region of ABC-type glycine betaine transport
system [Ochrobactrum anthropi ATCC 49188]
Length = 314
Score = 218 bits (556), Expect = 6e-55, Method: Composition-based stats.
Identities = 110/285 (38%), Positives = 178/285 (62%), Gaps = 3/285 (1%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWY 84
C +R +D GWTDI +T ++ SV+LE LGYK ++K ++VP+ + +LK +D+F+G W
Sbjct: 29 CETIRLSDPGWTDITSTNSVASVLLE-GLGYKPDVKTMSVPIGYEALKTGNLDVFLGNWM 87
Query: 85 PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYG 144
P+ +KF + + +++ +NL+GAK+ LAV D + G+K + D+A + + G +IYG
Sbjct: 88 PAQQKFRDDLDKAKAAEVIVKNLEGAKFTLAVPDYVASEGVKDFADLAAHADKFGKEIYG 147
Query: 145 IEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPIN 204
IEPG NQ I +I + KF L G++L+E+SE A +Q+ R ++ VFL+W PHP+N
Sbjct: 148 IEPGAPANQNIQKIIEDQKFKLDGWKLVESSEQAMLAQVDRKNKDKAWVVFLAWAPHPMN 207
Query: 205 SDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI 262
+ L I YL GG++ FG A VYT+ R+ + +CPN + K++ F+V +ENE+M I
Sbjct: 208 NKLKIEYLAGGDDYFGPNFGGAEVYTLGRTGWAAQCPNAATFFKSLTFTVDIENELMGKI 267
Query: 263 LNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
L+ + + L+ HPD + WL GVTTF G+ + ++ +
Sbjct: 268 LDEGAEGPAAAKEWLKAHPDQIDKWLAGVTTFKGEPGAEAVKANL 312
>gi|76817784|ref|YP_337273.1| glycine betaine ABC transporter substrate-binding protein
[Burkholderia pseudomallei 1710b]
gi|76582257|gb|ABA51731.1| Substrate binding domain of ABC-type glycine betaine transport
system protein [Burkholderia pseudomallei 1710b]
Length = 379
Score = 218 bits (556), Expect = 6e-55, Method: Composition-based stats.
Identities = 107/286 (37%), Positives = 166/286 (58%), Gaps = 3/286 (1%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWY 84
C VR A GWTDI AT A+ V+L+ LGY+ ++ L+VP+T++ LK +D+F+G W
Sbjct: 93 CRDVRMAGPGWTDIEATNALAGVVLKA-LGYRQSVSNLSVPITYQGLKKGQLDVFLGNWM 151
Query: 85 PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYG 144
P+ + P+++ +I ++ NL AK+ LAV D A G+ S+ D+AKY + GAKIYG
Sbjct: 152 PAQAPLVKPFVDARAIDVLHANLSHAKFTLAVPDYVAAAGVHSFADLAKYAQRFGAKIYG 211
Query: 145 IEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPIN 204
IEPG NQ I M+ + ++L+E+SE +Q+ R R VFL WEPH +N
Sbjct: 212 IEPGAPANQNISRMLADKALGPANWQLVESSETGMLTQVERAVRERQWIVFLGWEPHLMN 271
Query: 205 SDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI 262
+ ++ YL GG+ +G A+V TV R+D+ +C N++RL + + F+V LEN M+ +
Sbjct: 272 TKFHLVYLSGGDAYFGPDYGGATVNTVARADFASQCANLARLFRQMTFTVDLENGMIAAM 331
Query: 263 LNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
L K+ + LR +P L++ WL GV T G + ++
Sbjct: 332 LQGKRSAVDAAQHALRANPSLVEAWLDGVRTASGAPGLPAVRAALD 377
>gi|167827231|ref|ZP_02458702.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 9]
Length = 293
Score = 218 bits (555), Expect = 7e-55, Method: Composition-based stats.
Identities = 108/292 (36%), Positives = 169/292 (57%), Gaps = 3/292 (1%)
Query: 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDI 78
A + +C VR A GWTDI AT A+ V+L+ LGY+ ++ L+VP+T++ LK +D+
Sbjct: 1 AAEPAACRDVRMAGPGWTDIEATNALAGVVLKA-LGYRQSVSNLSVPITYQGLKKGQLDV 59
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL 138
F+G W P+ + P+++ +I ++ NL AK+ LAV D A G+ S+ D+AKY +
Sbjct: 60 FLGNWMPAQAPLVKPFVDARAIDVLHANLSHAKFTLAVPDYVAAAGVHSFADLAKYAQRF 119
Query: 139 GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
GAKIYGIEPG NQ I M+ + ++L+E+SE +Q+ R R VFL W
Sbjct: 120 GAKIYGIEPGAPANQNISRMLADKALGPANWQLVESSETGMLTQVERAVRERQWIVFLGW 179
Query: 199 EPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALEN 256
EPH +N+ ++ YL GG+ +G A+V TV R+D+ +C N++RL + + F+V LEN
Sbjct: 180 EPHLMNTKFHLVYLSGGDAYFGPDYGGATVNTVARADFASQCANLARLFRQMTFTVDLEN 239
Query: 257 EMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
M+ +L K+ + LR +P L++ WL GV T G + ++
Sbjct: 240 GMIAAMLQGKRSAVDAAQHALRANPSLVEAWLDGVRTASGAPGLPAVRAALD 291
>gi|294676452|ref|YP_003577067.1| glycine betaine/L-proline ABC transporter periplasmic glycine
betaine/L-proline-binding protein ProX [Rhodobacter
capsulatus SB 1003]
gi|294475272|gb|ADE84660.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein ProX-1 [Rhodobacter
capsulatus SB 1003]
Length = 308
Score = 218 bits (555), Expect = 8e-55, Method: Composition-based stats.
Identities = 141/308 (45%), Positives = 198/308 (64%), Gaps = 4/308 (1%)
Query: 4 ILAVCLFLTTFSISYA-RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL 62
L L ++S A A C V F+D GWTDI ATTA+T+ +L + LGY+T+IKLL
Sbjct: 2 TLRSFLLAGAATVSLALPAAADCNKVIFSDVGWTDITATTAVTTTVL-QALGYETDIKLL 60
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
+VPVT+ +L + +D+F+G W PS+E +APY ++G+++ + NL GAKY LA N G A
Sbjct: 61 SVPVTYTALSSGDVDVFLGNWMPSMEADLAPYRDDGTVETLRTNLVGAKYTLATNAAGAA 120
Query: 123 LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
LGIK + DIAK K L KIYGIEPGN+GN+ +LDMI KF L GF ++E+SE +
Sbjct: 121 LGIKDFADIAKNKDALEGKIYGIEPGNDGNRLVLDMITAGKFDLTGFEVVESSEQGMLAA 180
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPN 240
+ + +++N P VFL WEPHP+N++ + YL GG+E+ FG A V T VR Y+ +CPN
Sbjct: 181 VAKGEKDNTPVVFLGWEPHPMNANFKMSYLTGGDEVFGPNFGGAEVRTNVRKGYVAECPN 240
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPS 300
+LL N++FS+A+ENE+M IL+ D + L HP++L WL GVTT DG D
Sbjct: 241 TGKLLSNLEFSLAMENEIMGKILDEGIDPPTAAKDWLAAHPEVLAPWLAGVTTKDGGDGL 300
Query: 301 RQLERFMN 308
+ +
Sbjct: 301 AAVTAALK 308
>gi|257143236|ref|ZP_05591498.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
thailandensis E264]
Length = 332
Score = 218 bits (555), Expect = 8e-55, Method: Composition-based stats.
Identities = 109/286 (38%), Positives = 170/286 (59%), Gaps = 3/286 (1%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWY 84
C VR A GWTDI AT A+ V+L+ LGY+ ++ L+VP+T++ LK ID+F+G W
Sbjct: 46 CRDVRMAGPGWTDIEATNALAGVVLKA-LGYRQSVSNLSVPITYQGLKKGQIDVFLGNWM 104
Query: 85 PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYG 144
P+ + P+++ +I ++ NL AK+ LAV D A G+ S+ D+AKY + GAKIYG
Sbjct: 105 PAQAPLVKPFVDARTIDVLHANLSHAKFTLAVPDYVAAAGVHSFADLAKYAQRFGAKIYG 164
Query: 145 IEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPIN 204
IEPG NQ I M+ + ++L+E+SE +Q+ R R + VFL WEPH +N
Sbjct: 165 IEPGAPANQSISRMLADKALGPANWQLVESSETGMLTQVERAVREHQWIVFLGWEPHLMN 224
Query: 205 SDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI 262
+ ++ YL GG+ +G A+V TV R+D+ ++C N++RL + + F+V LEN M+ +
Sbjct: 225 TKFHLVYLSGGDAYFGPNYGGATVNTVARADFANQCTNLTRLFRQMTFTVDLENGMIAAM 284
Query: 263 LNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
L +K+ + LR +P L+ WL GVTT +G + ++
Sbjct: 285 LRDKRSAVDAAQHALRANPSLVDAWLDGVTTANGAPGLPAVRAALD 330
>gi|159186256|ref|NP_356015.2| hypothetical protein Atu4647 [Agrobacterium tumefaciens str. C58]
gi|159141390|gb|AAK88800.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
Length = 317
Score = 218 bits (555), Expect = 9e-55, Method: Composition-based stats.
Identities = 119/317 (37%), Positives = 187/317 (58%), Gaps = 12/317 (3%)
Query: 1 MYKI-----LAVCLFLTTFSISY---ARDADSCTPVRFADTGWTDIAATTAMTSVILEEI 52
M + +A L L+ + S A D +C +R +D GWTDI AT + SV+L +
Sbjct: 1 MKSVSHLHRIAAGLILSVAAFSTPLQAADDAACRTIRLSDPGWTDITATNGVASVLL-DA 59
Query: 53 LGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKY 112
LGY+ ++K L+VP+ ++++KN ID+F+G W P+ + F+ + +++ +NL+GAK+
Sbjct: 60 LGYEADVKTLSVPIGYQAMKNGEIDVFLGNWMPAQKSFVDDLNAAKAAEVMTKNLEGAKF 119
Query: 113 MLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
LAV G+K + D+AK+ E +KIYGIEPG NQ I +I+ N F LKG++L+
Sbjct: 120 TLAVPAYMAEKGVKDFADLAKHADEFESKIYGIEPGAPANQNIQKIIDANDFGLKGWQLV 179
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVV 230
E+ E A +Q+ R R+ VFL+W PHP+N ++I YL GG+ FG A VYT+
Sbjct: 180 ESGEQAMLAQVERAGRDKKAVVFLAWAPHPMNEKIDIAYLSGGDAYFGPNFGGAEVYTLA 239
Query: 231 RSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIG 290
R+ + +CPN + L KN+KF + +EN +M IL +D + L+ +P L WL G
Sbjct: 240 RTGWPQQCPNAATLFKNLKFDIGMENSLMGSIL-GGEDSKAAAAAWLKANPKALDGWLQG 298
Query: 291 VTTFDGQDPSRQLERFM 307
VTT DG+ + ++ +
Sbjct: 299 VTTLDGKPGADAVKGKL 315
>gi|254254486|ref|ZP_04947803.1| ABC-type proline/glycine betaine transport systems periplasmic
component [Burkholderia dolosa AUO158]
gi|124899131|gb|EAY70974.1| ABC-type proline/glycine betaine transport systems periplasmic
component [Burkholderia dolosa AUO158]
Length = 321
Score = 218 bits (554), Expect = 1e-54, Method: Composition-based stats.
Identities = 109/301 (36%), Positives = 172/301 (57%), Gaps = 3/301 (0%)
Query: 10 FLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFR 69
+ ++A + +C VR A GWTDI AT AM V+L+ LGY+ ++ L+VP+T++
Sbjct: 20 CMVGMPAAHAAEPQACRDVRMAAPGWTDIDATNAMAGVVLKA-LGYRQDVANLSVPITYQ 78
Query: 70 SLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQ 129
LK +D+F+G W P+ + P++++ SI ++ NL GAK+ LAV D A G+ ++
Sbjct: 79 GLKKGQVDVFLGNWMPAQAPLVKPFVDDKSIDVLHANLSGAKFTLAVPDYVAAAGVHTFA 138
Query: 130 DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRN 189
D+A+Y G KIYGIEPG NQ I M++++ + L+E+SE +Q+ R R+
Sbjct: 139 DLARYADRFGGKIYGIEPGAPANQNIKRMLSDHALGPANWSLVESSETGMLTQVERAVRD 198
Query: 190 NIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKN 247
VFL+WEPH +N+ + YL GG+ +G A+V TV R+ + D+C N++RL +
Sbjct: 199 KRWIVFLAWEPHLMNTKFKLTYLSGGDAYFGPNYGGATVNTVARAGFADQCTNLARLFRQ 258
Query: 248 IKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ FSV +EN M+ +L K + L+ P LL WL GVTT G + +
Sbjct: 259 MTFSVDVENRMIADMLEKKTPPALAAQHALKADPSLLAGWLDGVTTAAGAPGLPAVRAAL 318
Query: 308 N 308
+
Sbjct: 319 D 319
>gi|77461459|ref|YP_350966.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas fluorescens Pf0-1]
gi|77385462|gb|ABA76975.1| putative glycine betaine/L-proline ABC transport system,
substrate-binding protein [Pseudomonas fluorescens
Pf0-1]
Length = 315
Score = 218 bits (554), Expect = 1e-54, Method: Composition-based stats.
Identities = 125/294 (42%), Positives = 183/294 (62%), Gaps = 6/294 (2%)
Query: 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNK-GID 77
A + C+ V F+D GWTDI ATTA TSV+L LGYKT +++VPVT++SL + +D
Sbjct: 21 AAEPAQCSTVNFSDVGWTDITATTATTSVVL-NALGYKTKTTMISVPVTYKSLADGKNMD 79
Query: 78 IFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKE 137
+F+G W P++E I Y + G+++ V NL+GAKY LAV + G+ + DIAK+KKE
Sbjct: 80 VFLGNWMPTMENDIKAYRDAGTVETVRTNLKGAKYTLAVPQALYDKGLHDFADIAKFKKE 139
Query: 138 LGAKIYGIEPGNEGNQRILDMIN--NNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
L KIYGIEPGN+GN+ I MI+ GF+++E+SE SQ+ R Q+ + VF
Sbjct: 140 LDGKIYGIEPGNDGNRLIQSMIDKNAFGLKDAGFKVVESSEAGMLSQVDRAQKRDTAVVF 199
Query: 196 LSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVA 253
L W PHP+N I YL GG++ FG A+V T R Y ++C N+ +LLKN++F+V
Sbjct: 200 LGWAPHPMNKRFKIQYLTGGDDFFGPDFGAATVATNTRKGYAEECSNVGQLLKNLEFTVD 259
Query: 254 LENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+E+E+M IL++K + L+ +P +L WL GVTT DG+ ++ +
Sbjct: 260 MESELMGNILDDKMKPDAAAKAWLKKNPQVLDTWLAGVTTIDGKPGLEAVKAKI 313
>gi|66046147|ref|YP_235988.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. syringae B728a]
gi|63256854|gb|AAY37950.1| Substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. syringae B728a]
Length = 314
Score = 218 bits (554), Expect = 1e-54, Method: Composition-based stats.
Identities = 116/314 (36%), Positives = 179/314 (57%), Gaps = 10/314 (3%)
Query: 1 MYKILAVCLFLTTFSIS-----YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M +++ + S A DA SC VR WTD+ AT+AMT V+L + LGY
Sbjct: 1 MNRLIGCSVLALGASALLSSNVMAVDAASCQNVRMGVVNWTDVIATSAMTQVLL-DGLGY 59
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYML 114
KT + + F ++++ +D+F+GYW P + + IAP++E +K++ +L+ A+ L
Sbjct: 60 KTKQTSASQQIIFAGIRDQRLDLFLGYWNPLMTQTIAPFVEARKVKVLDKPSLEDARATL 119
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
AV G+KS+ DIA+++KELG KIYGIEPG+ N +I MI N+F L F+L+E+
Sbjct: 120 AVPTYLADKGLKSFADIARFEKELGGKIYGIEPGSGANTQIKAMIAKNQFGLGKFQLVES 179
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRS 232
SE + + R R VF W PHP+N ++ + YL G ++ G A+V+TV
Sbjct: 180 SEAGMLAAVDRAVRRKEAVVFFGWTPHPMNVNVAMTYLNGSDDALGPNEGMATVWTVTSP 239
Query: 233 DYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVT 292
Y ++CPN+ +LL N+ F+ A E+ MM+ +L + +D R L+ HP WL GVT
Sbjct: 240 TYAEQCPNVHKLLTNLTFTAADESRMMQPLL-DHKDALESARQWLKDHPQDQARWLEGVT 298
Query: 293 TFDGQDPSRQLERF 306
TFDG+ + L+
Sbjct: 299 TFDGKPAAANLQSS 312
>gi|83942955|ref|ZP_00955415.1| putative glycine betaine-binding ABC transporter protein
[Sulfitobacter sp. EE-36]
gi|83954130|ref|ZP_00962850.1| putative glycine betaine-binding abc transporter protein
[Sulfitobacter sp. NAS-14.1]
gi|83841167|gb|EAP80337.1| putative glycine betaine-binding abc transporter protein
[Sulfitobacter sp. NAS-14.1]
gi|83845963|gb|EAP83840.1| putative glycine betaine-binding ABC transporter protein
[Sulfitobacter sp. EE-36]
Length = 307
Score = 218 bits (554), Expect = 1e-54, Method: Composition-based stats.
Identities = 125/283 (44%), Positives = 189/283 (66%), Gaps = 3/283 (1%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWY 84
C + F+D GWTDI ATTA T+V+L + LGY+T++K+L+VPVT+ S+ +D+F+G W
Sbjct: 23 CDEITFSDVGWTDITATTAATTVVL-DALGYETDVKILSVPVTYTSMAAGDVDVFLGNWM 81
Query: 85 PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYG 144
P++E IAPY E+GS+ V NL GAKY LAVN +GIK++ DIA L +IYG
Sbjct: 82 PTMEADIAPYREDGSVDTVRANLTGAKYTLAVNKAAADMGIKNFADIAANADALDGQIYG 141
Query: 145 IEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPIN 204
IEPGN+GN+ I MI++N F L F + E+SE +Q++R P VFL WEPHP+N
Sbjct: 142 IEPGNDGNRLIQSMIDDNAFDLAEFEVKESSEQGMLAQVKRLSAKGEPIVFLGWEPHPMN 201
Query: 205 SDLNIHYLPGGEEISGF--GEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI 262
++ ++ YL GG++ G G A+V+T R+ ++++CPN+ +LL N++F++A+ENE+M I
Sbjct: 202 ANFDLTYLEGGDDFFGPDLGGATVHTNTRAGFVEECPNVGKLLTNLEFTLAMENEIMGAI 261
Query: 263 LNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLER 305
L++ ++ + ++ +PD+L WL GVTT DG D +
Sbjct: 262 LDDGEEPRDAATAWIKANPDVLDTWLDGVTTVDGGDAMAAAKT 304
>gi|78060816|ref|YP_367391.1| ABC proline/glycine betaine transporter, periplasmic ligand binding
protein [Burkholderia sp. 383]
gi|77965366|gb|ABB06747.1| ABC proline/glycine betaine transporter, periplasmic ligand binding
protein [Burkholderia sp. 383]
Length = 315
Score = 218 bits (554), Expect = 1e-54, Method: Composition-based stats.
Identities = 121/311 (38%), Positives = 188/311 (60%), Gaps = 6/311 (1%)
Query: 1 MYKILAVCLFLTTF-SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M ++L + ++ ++ A+D +C PVR ++ GWTDI TTA+ S++ E LGY+
Sbjct: 5 MARMLTTLVIASSLPGMASAQDDAACRPVRLSNIGWTDITVTTALASLL-LESLGYRPTT 63
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLV-AENLQGAKYMLAVND 118
L +VP++F LK++ ID+ +GYW+P +K I P+L+ + + NL GAK LA D
Sbjct: 64 TLSSVPISFAGLKSRQIDVSLGYWWPIQDKQIQPFLDSHAFVKLEPPNLSGAKETLATVD 123
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ G++S+ DIAK++ EL KIYGIEPG+ N I MI+NN+ L+GF+L+E+SE
Sbjct: 124 YAYQGGLRSFDDIAKHRAELDGKIYGIEPGSSANATIQRMIDNNEHGLRGFKLVESSEAG 183
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLD 236
++R R VF+ W PHP+N + I YL GG+ +GEA VYT+ + +
Sbjct: 184 MLVTVQRAVREKKWVVFIGWAPHPMNIQVPIQYLAGGDASFGPNYGEARVYTLTANGFAQ 243
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDG 296
+CPN RL+ N++F+ +EN +M ++ NK R LR HPD+L WL GVT+FDG
Sbjct: 244 RCPNAGRLVSNLRFTTDMENRLMLDVM-NKTRPDDAARAYLRQHPDVLDGWLDGVTSFDG 302
Query: 297 QDPSRQLERFM 307
++ ++ +
Sbjct: 303 RNGLATVKTAL 313
>gi|170737573|ref|YP_001778833.1| choline ABC transporter, periplasmic binding protein [Burkholderia
cenocepacia MC0-3]
gi|169819761|gb|ACA94343.1| choline ABC transporter, periplasmic binding protein [Burkholderia
cenocepacia MC0-3]
Length = 322
Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats.
Identities = 110/295 (37%), Positives = 172/295 (58%), Gaps = 3/295 (1%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKG 75
+YA D +C V+ A GWTDI AT AM V+L+ LGY+ ++ L+VP+T++ LK
Sbjct: 27 PAYAADPQTCDAVKMAAPGWTDIDATNAMAGVVLKA-LGYRQDVANLSVPITYQGLKKGQ 85
Query: 76 IDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK 135
+D+F+G W P+ + P+++E SI ++ NL GAK+ LAV D A G+ ++ D+A+Y
Sbjct: 86 VDVFLGNWMPAQAPLVKPFVDEKSIDVLHANLSGAKFTLAVPDYVAAAGVHTFADLARYA 145
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
G KIYGIEPG NQ I M++++ + L+E+SE +Q+ R R+ VF
Sbjct: 146 DRFGGKIYGIEPGAPANQNIKRMLSDHVLGPANWSLVESSETGMLTQVERAVRDKRWIVF 205
Query: 196 LSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVA 253
L WEPH +N+ ++ YL GG+ +G A+V TV R+ + +C N++RL + + FSV
Sbjct: 206 LGWEPHLMNTKFHLTYLSGGDAYFGPNYGGATVNTVTRAGFAGQCTNLARLFRQMTFSVD 265
Query: 254 LENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
+EN M+ +L+NK + L+ P L+ WL GVTT G + ++
Sbjct: 266 VENRMIADMLDNKTSPALAAQHALKAEPALVAGWLDGVTTAAGAPGLPAVRAALD 320
>gi|77461451|ref|YP_350958.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas fluorescens Pf0-1]
gi|77385454|gb|ABA76967.1| putative exported protein [Pseudomonas fluorescens Pf0-1]
Length = 314
Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats.
Identities = 112/312 (35%), Positives = 180/312 (57%), Gaps = 10/312 (3%)
Query: 1 MYKILAVCLFLT-----TFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M ++++ C+ + A D+ SC VR WTD+ AT+AM V+L + LGY
Sbjct: 1 MKRLISSCVLALSGTAFLSASVMAADSPSCQNVRMGVVNWTDVIATSAMAQVLL-DGLGY 59
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLV-AENLQGAKYML 114
T + + F ++++ +D+F+GYW P + + I P+++ +K++ A +L+ A+ L
Sbjct: 60 STKQTSASQQIVFAGIRDQRLDLFLGYWNPLMTQTITPFVDANQVKVLEAPSLKDARATL 119
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
AV G+K++ DIAK++KELG KIYGIEPG+ N +I MI N+F L F+L+E+
Sbjct: 120 AVPTYLADKGLKTFADIAKFEKELGGKIYGIEPGSGANTQIKAMIAKNQFGLGKFQLVES 179
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRS 232
SE + + R R VF W PHP+N ++ + YL G ++ G A+V+TV
Sbjct: 180 SEAGMLAAVDRAVRRKEAVVFFGWAPHPMNVNVQMTYLTGSDDALGPNEGMATVWTVTAP 239
Query: 233 DYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVT 292
Y ++CPN+SRLL N+ F+ E+ MM+ +L + +D + L+ HP + WL GVT
Sbjct: 240 KYAEQCPNVSRLLSNLTFTAEDESRMMQPLL-DHKDAFESAKQWLKDHPQDKQRWLEGVT 298
Query: 293 TFDGQDPSRQLE 304
TFDG+ + L+
Sbjct: 299 TFDGKPAAENLQ 310
>gi|323530123|ref|YP_004232275.1| choline ABC transporter periplasmic-binding protein [Burkholderia
sp. CCGE1001]
gi|323387125|gb|ADX59215.1| choline ABC transporter, periplasmic binding protein [Burkholderia
sp. CCGE1001]
Length = 317
Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats.
Identities = 123/314 (39%), Positives = 182/314 (57%), Gaps = 8/314 (2%)
Query: 1 MYKIL-----AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M K+ V L S + A + SC V A GWTDI AT AMT V+L+ LGY
Sbjct: 2 MNKLFKQALSGVALLCAAASFASAAEPQSCMQVNMAGPGWTDIDATNAMTGVVLKA-LGY 60
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
K + L+VP+T++ LK ID+F+G W P+ + P+ EE SI +V NL AK+ LA
Sbjct: 61 KQKVANLSVPITYQGLKKGQIDVFLGNWMPAQAPLVKPFEEEKSIVVVHPNLSNAKFTLA 120
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
V D A G+ S+ D+AK + +KIYGIEPG NQ I M+++ F L ++++E+S
Sbjct: 121 VPDYVAAAGVHSFADLAKNADKFDSKIYGIEPGAPANQNIKKMVDDKAFGLDSWKVVESS 180
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSD 233
E +Q+ R R VFL+WEPH +N+ + YL GG++ +G A+V TV R+
Sbjct: 181 ETGMLTQVERAVREKKWIVFLAWEPHVMNTKFKLTYLDGGDKYFGPNYGGATVNTVARTG 240
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
Y ++CPN+ RL + + F+V LEN ++ +L K + LR HPDLLK+WL GV+T
Sbjct: 241 YAEQCPNVDRLFRQLTFNVDLENGVITEVLEKKTNVDVAATEALRRHPDLLKSWLDGVST 300
Query: 294 FDGQDPSRQLERFM 307
+G + + ++ +
Sbjct: 301 ANGGNGLQAVQAAL 314
>gi|170692918|ref|ZP_02884079.1| choline ABC transporter, periplasmic binding protein [Burkholderia
graminis C4D1M]
gi|170141916|gb|EDT10083.1| choline ABC transporter, periplasmic binding protein [Burkholderia
graminis C4D1M]
Length = 324
Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats.
Identities = 122/291 (41%), Positives = 180/291 (61%), Gaps = 5/291 (1%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
+D +C VRFAD GWTDI +TTA+ S + E LGY+ + +VP++F LK K +D+
Sbjct: 34 QDPPACRAVRFADIGWTDITSTTALASTVFE-GLGYQPVTTVASVPISFAGLKTKQLDVS 92
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLV-AENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL 138
+GYW+P EK IAP+++ +I ++ NL GAK AV + G+K++ DIAK++ +L
Sbjct: 93 LGYWWPVQEKAIAPFVDSKAIDVLQPPNLTGAKATFAVPGYAYDAGLKTFADIAKHRDQL 152
Query: 139 GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
KIYGIEPG+ N I MI NKF L GF+LIE+SE + R R+ VFL W
Sbjct: 153 DGKIYGIEPGSSANAAIQKMIATNKFGLGGFKLIESSEAGMLVSVERAIRDKKWVVFLGW 212
Query: 199 EPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALEN 256
EPHP+N +++ YL G + + GEA VYT+ DYL +CPN +L+ N++FS LEN
Sbjct: 213 EPHPMNIQIDMKYLSGSDGVFGPNDGEARVYTLTSPDYLTRCPNAGKLVSNLRFSTQLEN 272
Query: 257 EMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+M+ ++ NKQ + L+ +P +L WL GV T+DG+D ++ ++
Sbjct: 273 VVMQSVM-NKQKPADAAKAYLKKNPQILDAWLAGVKTYDGKDGLPAVKAYL 322
>gi|115359229|ref|YP_776367.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia ambifaria AMMD]
gi|115284517|gb|ABI90033.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia ambifaria AMMD]
Length = 322
Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats.
Identities = 107/295 (36%), Positives = 174/295 (58%), Gaps = 3/295 (1%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKG 75
++A D +C V+ A GWTDI AT AM V+L+ LGY+ ++ L+VP+T++ LK
Sbjct: 27 PAHAADPQTCRDVKMAAPGWTDIDATNAMAGVVLKA-LGYRQDVANLSVPITYQGLKKGQ 85
Query: 76 IDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK 135
+D+F+G W P+ + P+++E SI ++ NL GAK+ LAV D A G+ ++ D+A+Y
Sbjct: 86 VDVFLGNWMPAQAPLVKPFVDEKSIDVLHANLSGAKFTLAVPDYVAAAGVHTFADLARYA 145
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
G KIYGIEPG NQ I M++++ + L+E+SE +Q+ R R+ VF
Sbjct: 146 DRFGDKIYGIEPGAPANQNIKRMLSDHALGPANWSLVESSETGMLTQVERAVRDKRWIVF 205
Query: 196 LSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVA 253
L+WEPH +N+ ++ YL GG+ +G A+V TV R + +C N++RL + + FSV
Sbjct: 206 LAWEPHLMNTKFHLTYLSGGDAYFGPNYGGATVNTVTRPGFAGQCANLARLFRQMTFSVD 265
Query: 254 LENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
+EN ++ +L++K + +L+ P L++ WL GVTT G + ++
Sbjct: 266 VENRIIADMLDHKTSPALAAQHVLKADPALVEGWLDGVTTASGTPALPAVRAALD 320
>gi|170724061|ref|YP_001751749.1| choline ABC transporter periplasmic binding protein [Pseudomonas
putida W619]
gi|169762064|gb|ACA75380.1| choline ABC transporter, periplasmic binding protein [Pseudomonas
putida W619]
Length = 314
Score = 217 bits (551), Expect = 2e-54, Method: Composition-based stats.
Identities = 110/296 (37%), Positives = 171/296 (57%), Gaps = 5/296 (1%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSL 71
+ +A + +C VR WTD+ AT+AM V+L + LGY+T + + F +
Sbjct: 17 IVATPLFAAEPAACKNVRLGVVNWTDVIATSAMAQVLL-DGLGYQTKQTSASQQIIFAGI 75
Query: 72 KNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAVNDVGFALGIKSYQD 130
++K +D+F+GYW P + + I P+++ +K++ +L+ A+ LAV G+KS+ D
Sbjct: 76 RDKRLDMFLGYWNPIMTQTITPFIDAQQVKVLDAPSLEDARATLAVPKYLADKGLKSFAD 135
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
I K++KELG KIYGIEPG+ N +I MI N+F L F+L+E+SE + + R R
Sbjct: 136 IHKFEKELGGKIYGIEPGSGANTQIKAMIAKNQFGLGKFQLVESSEAGMLAAVDRAVRRK 195
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNI 248
VF W PHP+N ++++ YL ++ G A+V+TV DY +CPN RLL N+
Sbjct: 196 QAVVFFGWAPHPMNVNIDMVYLSDSQDALGPDEGRATVWTVTAPDYAQRCPNAHRLLANL 255
Query: 249 KFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLE 304
KFS E+ MM+ +L + +D R L+ HP+ WL GVTTFDG+ + L+
Sbjct: 256 KFSAEDESRMMQPLL-DHKDALESARQWLKDHPEDKARWLEGVTTFDGKPAADNLK 310
>gi|167616749|ref|ZP_02385380.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
thailandensis Bt4]
Length = 336
Score = 217 bits (551), Expect = 2e-54, Method: Composition-based stats.
Identities = 108/286 (37%), Positives = 171/286 (59%), Gaps = 3/286 (1%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWY 84
C VR A GWTDI AT A+ V+L+ LGY+ ++ L+VP+T++ LK ID+F+G W
Sbjct: 50 CRDVRMAGPGWTDIEATNALAGVVLKA-LGYRQSVSNLSVPITYQGLKKGQIDVFLGNWM 108
Query: 85 PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYG 144
P+ + P+++ ++ ++ NL AK+ LAV D A G+ S+ D+AKY + GAKIYG
Sbjct: 109 PAQAPLVKPFVDARTVDVLHANLSHAKFTLAVPDYVAAAGVHSFADLAKYAQRFGAKIYG 168
Query: 145 IEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPIN 204
IEPG NQ I M+ + ++L+E+SE +Q+ R R + VFL WEPH +N
Sbjct: 169 IEPGAPANQSISRMLADKALGPANWQLVESSETGMLTQVERAVREHQWIVFLGWEPHLMN 228
Query: 205 SDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI 262
+ ++ YL GG+ +G A+V TV R+D++++C N++RL + + F+V LEN M+ +
Sbjct: 229 TKFHLVYLSGGDAYFGPNYGAATVNTVARADFVNQCTNLARLFRQMTFTVDLENGMIAAM 288
Query: 263 LNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
L +K+ + LR +P L+ WL GVTT +G + ++
Sbjct: 289 LRDKRSAVDAAQHALRANPSLVDAWLDGVTTANGAPGLPAVRAALD 334
>gi|229593054|ref|YP_002875173.1| putative glycine betaine/L-proline ABC transporter
substrate-binding protein [Pseudomonas fluorescens
SBW25]
gi|229364920|emb|CAY53012.1| putative glycine betaine/L-proline ABC transport system,
substrate-binding protein [Pseudomonas fluorescens
SBW25]
Length = 315
Score = 217 bits (551), Expect = 3e-54, Method: Composition-based stats.
Identities = 120/299 (40%), Positives = 190/299 (63%), Gaps = 6/299 (2%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNK 74
+++A + C V F+D GWTDI TTA TS +L+ LGYK +++VPVT++SL +
Sbjct: 17 VLAHAAEPAQCQTVNFSDVGWTDITVTTATTSEVLK-GLGYKPRTTMISVPVTYKSLADG 75
Query: 75 -GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAK 133
+DIF+G W P++E I Y + G+++ V NL+ AKY LAV + + G+K + DIAK
Sbjct: 76 KNMDIFLGNWMPTMENDIKQYRDAGTVETVRANLENAKYTLAVPEALYNKGLKDFADIAK 135
Query: 134 YKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK--GFRLIEASELASFSQIRRDQRNNI 191
+K ELG KIYGIEPGN+GN+ I +I+ + F LK GF+++E+SE SQ+ R + +
Sbjct: 136 FKDELGGKIYGIEPGNDGNRTIQTLIDKDAFGLKTAGFKVVESSEAGMLSQVERATKRDQ 195
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
VFL WEPHP+N+ + YL GG++ +G+A++YT R Y +C N+ +LLKN+
Sbjct: 196 AIVFLGWEPHPMNTRFKMKYLTGGDDSFGPNYGQATIYTNTRKGYTQECSNVGQLLKNLS 255
Query: 250 FSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
F++ +E+ +M +L++K + L+ +P +L WL GVTT DG+ ++ +++
Sbjct: 256 FTLNMESTLMGNVLDDKMKPDAAAKAWLKKNPQVLDTWLAGVTTVDGKPGLEAVKAYLD 314
>gi|172064019|ref|YP_001811670.1| choline ABC transporter, periplasmic binding protein [Burkholderia
ambifaria MC40-6]
gi|171996536|gb|ACB67454.1| choline ABC transporter, periplasmic binding protein [Burkholderia
ambifaria MC40-6]
Length = 322
Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats.
Identities = 107/295 (36%), Positives = 173/295 (58%), Gaps = 3/295 (1%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKG 75
+ A D +C V+ A GWTDI AT AM V+L+ LGY+ ++ L+VP+T++ LK
Sbjct: 27 PANAADPQTCRDVKMAAPGWTDIDATNAMAGVVLKA-LGYRQDVANLSVPITYQGLKKGQ 85
Query: 76 IDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK 135
+D+F+G W P+ + P+++E SI ++ NL GAK+ LAV D A G+ ++ D+A+Y
Sbjct: 86 VDVFLGNWMPAQAPLVKPFVDEKSIDVLHANLSGAKFTLAVPDYVAAAGVHTFADLARYA 145
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
G KIYGIEPG NQ I M++++ + L+E+SE +Q+ R R+ VF
Sbjct: 146 DRFGDKIYGIEPGAPANQNIKRMLSDHALGPANWSLVESSETGMLTQVERAVRDKRWIVF 205
Query: 196 LSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVA 253
L+WEPH +N+ ++ YL GG+ +G A+V TV R + +C N++RL + + FSV
Sbjct: 206 LAWEPHLMNTKFHLTYLSGGDAYFGPNYGGATVNTVTRPGFAGQCANLARLFRQMTFSVD 265
Query: 254 LENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
+EN ++ +L++K + +L+ P L++ WL GVTT G + ++
Sbjct: 266 VENRIIADMLDHKTSPALAAQHVLKADPALVEGWLDGVTTASGTPALPAVRAALD 320
>gi|330812262|ref|YP_004356724.1| choline ABC transporter periplasmic protein [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|327380370|gb|AEA71720.1| putative choline ABC transporter, periplasmic component
[Pseudomonas brassicacearum subsp. brassicacearum
NFM421]
Length = 314
Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats.
Identities = 113/312 (36%), Positives = 178/312 (57%), Gaps = 10/312 (3%)
Query: 1 MYKILAVCLFLTTFSISYARDADS-----CTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M ++++ C+ + A + C VR WTD+ AT+A+T V+L + LGY
Sbjct: 1 MKRLISSCVLALCGTTLLNGAAMAAEPAACQNVRLGVVNWTDVIATSALTQVML-DGLGY 59
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLV-AENLQGAKYML 114
KT + + F ++++ +D+F+GYW P + + I P++E +K++ +L+ A+ L
Sbjct: 60 KTKQTSASQQIIFAGIRDQRLDLFLGYWNPLMTQTITPFVEAKQVKVLEQPSLKDARATL 119
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
AV G+K++ DIAK++KELG KIYGIEPG+ N +I MI N+F L F+L+E+
Sbjct: 120 AVPTYLADKGLKTFADIAKFEKELGGKIYGIEPGSGANTQIKAMIAKNQFGLGKFQLVES 179
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRS 232
SE + + R R VF W PHP+N ++ + YL G ++ G A+V+TV
Sbjct: 180 SEAGMLAAVDRAVRRKEAVVFFGWAPHPMNVNVQMTYLTGSDDALGPNEGMATVWTVTAP 239
Query: 233 DYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVT 292
DY +CPN+ RLL N+ FS E+ MM+ +L + +D R L+ HP + WL GVT
Sbjct: 240 DYAQQCPNVGRLLSNLTFSAEDESRMMQPLL-DHKDPLESARQWLKDHPQDKQRWLEGVT 298
Query: 293 TFDGQDPSRQLE 304
TFDG+ + L+
Sbjct: 299 TFDGKPAADNLK 310
>gi|307727878|ref|YP_003911091.1| choline ABC transporter periplasmic-binding protein [Burkholderia
sp. CCGE1003]
gi|307588403|gb|ADN61800.1| choline ABC transporter, periplasmic binding protein [Burkholderia
sp. CCGE1003]
Length = 317
Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats.
Identities = 119/314 (37%), Positives = 179/314 (57%), Gaps = 8/314 (2%)
Query: 1 MYKILAVCLFLTTFSISYAR-----DADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M K+ + + A + SC V A GWTDI AT AMT V+L+ LGY
Sbjct: 2 MKKLFKQAISGVALLCAAASLASAAEPQSCMQVNMAGPGWTDIDATNAMTGVVLKA-LGY 60
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
K + L+VP+T++ LK ID+F+G W P+ + P+ EE SI +V NL AK+ LA
Sbjct: 61 KQKVANLSVPITYQGLKKGQIDVFLGNWMPAQAPVVKPFEEEKSIVVVHPNLSNAKFTLA 120
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
V D A G+ S+ D+AK + +KIYGIEPG NQ I M+++ F L ++++E+S
Sbjct: 121 VPDYVAAAGVHSFADLAKNADKFDSKIYGIEPGAPANQNIKKMVDDKAFGLDSWKVVESS 180
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSD 233
E +Q+ R R VFL+WEPH +N+ + YL GG++ +G A+V TV R+
Sbjct: 181 ETGMLTQVERAVREKKWIVFLAWEPHVMNTKFKLTYLDGGDKYFGPNYGGATVNTVARTG 240
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
Y ++CPN+SRL + + F+V LEN ++ +L K L+ HP+LLK+WL GV+T
Sbjct: 241 YAEQCPNVSRLFRQLTFNVDLENGVITEVLEKKTSVDVAATEALKRHPELLKSWLDGVST 300
Query: 294 FDGQDPSRQLERFM 307
G + + ++ +
Sbjct: 301 ASGGNGLQAVQTAL 314
>gi|206564148|ref|YP_002234911.1| putative glycine betaine transporter substrate binding protein
[Burkholderia cenocepacia J2315]
gi|198040188|emb|CAR56171.1| putative ABC-type glycine betaine transport system, substrate
binding protein [Burkholderia cenocepacia J2315]
Length = 322
Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats.
Identities = 110/295 (37%), Positives = 173/295 (58%), Gaps = 3/295 (1%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKG 75
+ A D +C+ V+ A GWTDI AT AM V+L+ LGY+ ++ L+VP+T++ LK
Sbjct: 27 PASAADPQTCSDVKMAAPGWTDIDATNAMAGVVLKA-LGYRQDVANLSVPITYQGLKKGQ 85
Query: 76 IDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK 135
+D+F+G W P+ + P+++E SI ++ NL GAK+ LAV D A G+ ++ D+A+Y
Sbjct: 86 VDVFLGNWMPAQAPLVKPFVDEKSIDVLHANLSGAKFTLAVPDYVAAAGVHTFADLARYA 145
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
G KIYGIEPG NQ I M++++ + L+E+SE +Q+ R R+ VF
Sbjct: 146 DRFGGKIYGIEPGAPANQNIKRMLSDHALGSANWSLVESSETGMLTQVERAVRDKRWIVF 205
Query: 196 LSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVA 253
L+WEPH +N+ ++ YL GG+ +G A+V TV RS + +C N++RL + + FSV
Sbjct: 206 LAWEPHLMNTKFHLTYLSGGDAYFGPNYGGATVNTVTRSGFAGQCANLARLFRQMTFSVD 265
Query: 254 LENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
+EN M+ +L+NK + L+ P L+ WL GVTT G + ++
Sbjct: 266 VENRMIADMLDNKTSPALAAQHALKAEPALVAAWLDGVTTAAGAPGLPAVRAALD 320
>gi|107025654|ref|YP_623165.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia cenocepacia AU 1054]
gi|116693164|ref|YP_838697.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia cenocepacia HI2424]
gi|105895028|gb|ABF78192.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia cenocepacia AU 1054]
gi|116651164|gb|ABK11804.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia cenocepacia HI2424]
Length = 321
Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats.
Identities = 109/292 (37%), Positives = 170/292 (58%), Gaps = 3/292 (1%)
Query: 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDI 78
A D +C V+ A GWTDI AT AM V+L+ LGY+ ++ L+VP+T++ LK +D+
Sbjct: 29 AADPQTCDAVKMAAPGWTDIDATNAMAGVVLKA-LGYRQDVANLSVPITYQGLKKGQVDV 87
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL 138
F+G W P+ + P+++E SI ++ NL GAK+ LAV D A G+ ++ D+A+Y
Sbjct: 88 FLGNWMPAQAPLVKPFVDEKSIDVLHANLSGAKFTLAVPDYVAAAGVHTFADLARYADRF 147
Query: 139 GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
G KIYGIEPG NQ I M++++ L+E+SE +Q+ R R+ VFL+W
Sbjct: 148 GGKIYGIEPGAPANQNIKRMLSDHVLGPANRSLVESSETGMLTQVERAVRDKRWIVFLAW 207
Query: 199 EPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALEN 256
EPH +N+ ++ YL GG+ +G A+V TV R+ + +C N++RL + + FSV +EN
Sbjct: 208 EPHLMNTKFHLTYLSGGDAYFGPNYGGATVNTVTRAGFAGQCTNLARLFRQMTFSVDVEN 267
Query: 257 EMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
M+ +L+NK + L+ P L+ WL GVTT G + ++
Sbjct: 268 RMIADMLDNKTSPALAAQHALKAEPALVAGWLDGVTTAAGAPGLPAVRAALD 319
>gi|297538493|ref|YP_003674262.1| choline ABC transporter periplasmic-binding protein [Methylotenera
sp. 301]
gi|297257840|gb|ADI29685.1| choline ABC transporter, periplasmic binding protein [Methylotenera
sp. 301]
Length = 329
Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats.
Identities = 126/308 (40%), Positives = 187/308 (60%), Gaps = 5/308 (1%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
K V T +A SC+ V+FAD GWTDI ATTA++SV+LE LGYK +
Sbjct: 23 KKESEVSAPAATAEAPSTGEAASCSAVKFADIGWTDITATTALSSVVLE-GLGYKPVSTI 81
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+VP+ F +K ID+F+GYW PS+ + P+L++ + L NL GAKY LAV +
Sbjct: 82 ASVPIAFAGIKKSQIDVFLGYWSPSMTPIVEPFLKDIKV-LEKPNLVGAKYTLAVPTYAY 140
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
G+KS+ DIAK+K L K+YGIEPGN+GN+ I DMI N F LK F+++E+SE +
Sbjct: 141 EAGLKSFNDIAKFKDNLDGKMYGIEPGNDGNKIIADMITKNAFGLKDFKMVESSEAGMLT 200
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCP 239
++ R +N VFL W PHP+N +I YL GG++ +GEA VYTV SD +CP
Sbjct: 201 EVSRSVKNKKWIVFLGWAPHPMNVQQDITYLSGGDDFFGANYGEAKVYTVTASDLGTRCP 260
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDP 299
N+++L+ N++F++ +EN++M I++ + L +P +L WL GV T DG+
Sbjct: 261 NVNKLVTNLEFNLDMENQVMLPIMDKTV-PNVAAKAWLTKNPAVLDKWLDGVKTLDGKPG 319
Query: 300 SRQLERFM 307
+++++
Sbjct: 320 LEAVKKYL 327
>gi|119385016|ref|YP_916072.1| substrate-binding region of ABC-type glycine betaine transport
system [Paracoccus denitrificans PD1222]
gi|119374783|gb|ABL70376.1| Substrate-binding region of ABC-type glycine betaine transport
system [Paracoccus denitrificans PD1222]
Length = 311
Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats.
Identities = 111/291 (38%), Positives = 171/291 (58%), Gaps = 3/291 (1%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
+D SC VRF+D GWTDI AT + +L + LGY + L+VPV + +LKN D+F
Sbjct: 22 QDPASCGTVRFSDPGWTDITATNGVAIALL-QGLGYTPQVSTLSVPVGYEALKNGDTDVF 80
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
+G W P+ +KF G+I+ + +NL+GAK+ LAV D LGI+ + D+ +K
Sbjct: 81 LGNWMPAQQKFRDDLDASGTIQELVQNLEGAKFTLAVTDAAADLGIQDFADLDAHKDAFQ 140
Query: 140 AKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWE 199
KIYGIEPG NQ I MI +KF L + L+E+SE +Q+ R+ P+VFL+W
Sbjct: 141 GKIYGIEPGAPANQTIQGMIEADKFGLGDWELVESSEQGMLAQVARNDAAKTPSVFLAWA 200
Query: 200 PHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENE 257
PHP+N L I YL GG+E +G A+V+T+ R+++++ CPN+++L + F+V EN
Sbjct: 201 PHPMNVKLAITYLSGGDEEFGPDYGGATVHTLARNEWVEACPNVAKLFTQLTFTVDQENL 260
Query: 258 MMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
+M IL++ D + + + + + WL GVTT DG+ + + +
Sbjct: 261 LMGKILDDGMDATDAAKGWIGENAETVATWLDGVTTLDGKPGAEAVMASVK 311
>gi|221200361|ref|ZP_03573403.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
multivorans CGD2M]
gi|221206040|ref|ZP_03579054.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
multivorans CGD2]
gi|221174052|gb|EEE06485.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
multivorans CGD2]
gi|221179702|gb|EEE12107.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
multivorans CGD2M]
Length = 320
Score = 216 bits (549), Expect = 4e-54, Method: Composition-based stats.
Identities = 108/290 (37%), Positives = 168/290 (57%), Gaps = 3/290 (1%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFM 80
+ +C VR A GWTDI AT AM V+L+ LGY+ ++ L+VP+T++ LK +D+F+
Sbjct: 30 EPQTCRDVRMAAPGWTDIDATNAMAGVVLKA-LGYRQDVANLSVPITYQGLKKGQVDVFL 88
Query: 81 GYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGA 140
G W P+ + P+++E SI ++ NL GAK+ LAV D A G+ ++ D+A+Y G
Sbjct: 89 GNWMPAQAPLVKPFVDEKSIDVLHANLSGAKFTLAVPDYVAAAGVHTFADLARYADRFGD 148
Query: 141 KIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEP 200
KIYGIEPG NQ I M++++ + L+E+SE +Q+ R R+ VFL+WEP
Sbjct: 149 KIYGIEPGAPANQNIKRMLSDHALGSANWSLVESSETGMLTQVERAVRDKRWIVFLAWEP 208
Query: 201 HPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEM 258
H +N+ + YL GG+ +G A+V TV R+ + D+C N++RL + + FSV +EN M
Sbjct: 209 HLMNTKFKLTYLSGGDAYFGPNYGGATVNTVARAGFADQCTNLARLFRQMTFSVDVENRM 268
Query: 259 MKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
+ +L K + L+ P L+ WL GVTT G + ++
Sbjct: 269 IADMLEKKTSPALAAQHALKADPSLVAGWLDGVTTASGAPGLPAVRAALD 318
>gi|298290403|ref|YP_003692342.1| choline ABC transporter periplasmic protein [Starkeya novella DSM
506]
gi|296926914|gb|ADH87723.1| choline ABC transporter, periplasmic binding protein [Starkeya
novella DSM 506]
Length = 314
Score = 216 bits (549), Expect = 4e-54, Method: Composition-based stats.
Identities = 122/312 (39%), Positives = 181/312 (58%), Gaps = 6/312 (1%)
Query: 1 MYKILAVCLFLTTF---SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
+ + L CL L+ S ++A + +C RF+D GWTDI ATT + S IL + LGYK
Sbjct: 2 ILRSLVACLSLSATLLGSPAFASEPAACAKPRFSDVGWTDITATTTIASQIL-QSLGYKP 60
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+ +L+V +TF++L+N DIF+G W P E P ++ G + +V +NL+ A+ A +
Sbjct: 61 EVSVLSVAITFKALENGDRDIFLGNWMPLQEPTQGPLVKAGKVDVVVDNLKDARIGFATS 120
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
G+K+Y DIAK+K +LG K+YGIE G+ N I MI + F LKGF L+E+SE
Sbjct: 121 KEAHDAGLKTYADIAKFKDQLGGKLYGIEAGSGANNTISKMITEDTFGLKGFDLVESSEQ 180
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYL 235
+Q+ + R P VF W PHP+N +L I YL G ++ G A+V T+ R Y+
Sbjct: 181 GMLAQVSQKIRMKQPVVFFGWRPHPMNVNLPIAYLSNGNDVFGPNDGGATVVTLTRPGYV 240
Query: 236 DKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFD 295
+CPN+ RLL N+ F VA+E+ +M IL+ R L+ +P +L WL GVTTFD
Sbjct: 241 KECPNVGRLLTNLVFDVAMEDRLMSDILDKGMTPDAAVRAWLKENPAVLDKWLAGVTTFD 300
Query: 296 GQDPSRQLERFM 307
G+ ++ +
Sbjct: 301 GKPSVTAVKSGL 312
>gi|221209395|ref|ZP_03582376.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
multivorans CGD1]
gi|221170083|gb|EEE02549.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
multivorans CGD1]
Length = 320
Score = 216 bits (549), Expect = 4e-54, Method: Composition-based stats.
Identities = 108/290 (37%), Positives = 168/290 (57%), Gaps = 3/290 (1%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFM 80
+ +C VR A GWTDI AT AM V+L+ LGY+ ++ L+VP+T++ LK +D+F+
Sbjct: 30 EPQTCRDVRMAAPGWTDIDATNAMAGVVLKA-LGYRQDVANLSVPITYQGLKKGQVDVFL 88
Query: 81 GYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGA 140
G W P+ + P+++E SI ++ NL GAK+ LAV D A G+ ++ D+A+Y G
Sbjct: 89 GNWMPAQAPLVKPFVDEKSIDVLHANLSGAKFTLAVPDYVAAAGVHTFADLARYADRFGD 148
Query: 141 KIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEP 200
KIYGIEPG NQ I M++++ + L+E+SE +Q+ R R+ VFL+WEP
Sbjct: 149 KIYGIEPGAPANQNIKRMLSDHALGPANWSLVESSETGMLTQVERAVRDKRWIVFLAWEP 208
Query: 201 HPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEM 258
H +N+ + YL GG+ +G A+V TV R+ + D+C N++RL + + FSV +EN M
Sbjct: 209 HLMNTKFKLTYLSGGDAYFGPNYGGATVNTVARAGFADQCTNLARLFRQMTFSVDVENRM 268
Query: 259 MKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
+ +L K + L+ P L+ WL GVTT G + ++
Sbjct: 269 IADMLEKKTSPALAAQHALKADPSLVAGWLDGVTTASGAPGLPAVRAALD 318
>gi|260575919|ref|ZP_05843914.1| choline ABC transporter, periplasmic binding protein [Rhodobacter
sp. SW2]
gi|259021845|gb|EEW25146.1| choline ABC transporter, periplasmic binding protein [Rhodobacter
sp. SW2]
Length = 310
Score = 216 bits (549), Expect = 4e-54, Method: Composition-based stats.
Identities = 134/285 (47%), Positives = 182/285 (63%), Gaps = 4/285 (1%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWY 84
C V F+D GWTDI ATTA TS++LE LGY+T KLL+VPVT+ L +D+F+G W
Sbjct: 26 CDKVTFSDVGWTDITATTAATSLVLEA-LGYETETKLLSVPVTYVGLSEGDVDVFLGNWM 84
Query: 85 PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYG 144
P++E IAPY + G+++ V NL+GAKY LA N G ALGIK + DIA +K L KIYG
Sbjct: 85 PTMEADIAPYRDAGTVETVRTNLEGAKYTLATNAAGAALGIKDFADIAAHKDALEGKIYG 144
Query: 145 IEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPIN 204
IEPGN+GN+ IL MI F L GF ++E+SE +++ R P +FL WEPHP+N
Sbjct: 145 IEPGNDGNRLILSMIEGGAFGLTGFEVVESSEQGMLAEVARSGEEK-PIIFLGWEPHPMN 203
Query: 205 SDLNIHYLPGGEEISGF--GEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI 262
++ + YL GG+E G G A V T R Y+ +CPN LL N+ FS+A+ENE+M I
Sbjct: 204 ANFKMTYLTGGDEFFGPNLGGAVVATNTRKGYVAECPNQGALLTNLSFSLAMENEIMGAI 263
Query: 263 LNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
LN+ D + + L HP++++ WL GVTT DG D ++ +
Sbjct: 264 LNDGADPKEAAKAWLAAHPEVIEPWLAGVTTKDGGDALAAVKAAI 308
>gi|312963528|ref|ZP_07778010.1| glycine betaine/L-proline ABC transporter, periplasmic
substrate-binding protein [Pseudomonas fluorescens WH6]
gi|311282334|gb|EFQ60933.1| glycine betaine/L-proline ABC transporter, periplasmic
substrate-binding protein [Pseudomonas fluorescens WH6]
Length = 315
Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats.
Identities = 122/299 (40%), Positives = 191/299 (63%), Gaps = 6/299 (2%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNK 74
+++A + + C V F+D GWTDI TTA TS IL+ LGYK +++VPVT++SL +
Sbjct: 17 VMAHAAEPEQCKTVNFSDVGWTDITVTTATTSEILK-GLGYKPRTTMISVPVTYKSLADG 75
Query: 75 -GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAK 133
+DIF+G W P++E I Y + G+++ V NL+ AKY LAV + G+K + DIAK
Sbjct: 76 KNMDIFLGNWMPTMENDIKQYRDAGTVETVRANLENAKYTLAVPQALYDKGLKDFADIAK 135
Query: 134 YKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK--GFRLIEASELASFSQIRRDQRNNI 191
+K+ELG KIYGIEPGN+GN+ I +I+ + F LK GF+++E+SE SQ+ R + +
Sbjct: 136 FKEELGGKIYGIEPGNDGNRTIQTLIDKDAFGLKTAGFKVVESSEAGMLSQVERATKRDQ 195
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
VFL WEPHP+N+ + YL GG++ +G+A++YT R Y +C N+ +LLKN+
Sbjct: 196 AIVFLGWEPHPMNTRFKMKYLTGGDDSFGPNYGQATIYTNTRKGYTQECSNVGQLLKNLV 255
Query: 250 FSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
F++ +E+ +M +L++K + L+ +P +L WL GVTT DGQ ++ +++
Sbjct: 256 FTLNMESTLMGNVLDDKMKPDAAAKAWLKKNPQVLDTWLAGVTTVDGQPGLAAVKAYLD 314
>gi|134292126|ref|YP_001115862.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia vietnamiensis G4]
gi|134135283|gb|ABO56397.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia vietnamiensis G4]
Length = 324
Score = 215 bits (548), Expect = 5e-54, Method: Composition-based stats.
Identities = 107/295 (36%), Positives = 175/295 (59%), Gaps = 3/295 (1%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKG 75
++A DA +C V+ A GWTDI AT AM V+L+ LGY+ ++ L+VP+T++ LK
Sbjct: 29 PAHAADAQTCRDVKMAAPGWTDIDATNAMAGVVLKA-LGYRQDVANLSVPITYQGLKKGQ 87
Query: 76 IDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK 135
+D+F+G W P+ + P+++E +I ++ NL GAK+ LAV D A G+ ++ D+A +
Sbjct: 88 VDVFLGNWMPAQAPLVKPFVDEKAIDVLHANLSGAKFTLAVPDYVAAAGVHTFADLAAHA 147
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
+ G KIYGIEPG NQ I M+ ++ + L+E+SE +Q+ R R+ VF
Sbjct: 148 DQFGGKIYGIEPGAPANQNIKRMLADHALGAANWSLVESSETGMLTQVERAVRDKRWIVF 207
Query: 196 LSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVA 253
L+WEPH +N+ ++ YL GG+ +G A+V TV R+ + +C N++RL + + FSV
Sbjct: 208 LAWEPHLMNTKFHLTYLSGGDAYFGPNYGGATVNTVTRAGFAGQCANLARLFRQMTFSVD 267
Query: 254 LENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
+EN M+ +L++K + +L+ P L++ WL GVTT G + ++
Sbjct: 268 VENRMIADMLDHKTPPAVAAQHVLKADPSLVERWLDGVTTAAGAPALPAVRAALD 322
>gi|149915312|ref|ZP_01903839.1| Substrate-binding region of ABC-type glycine betaine transport
system [Roseobacter sp. AzwK-3b]
gi|149810601|gb|EDM70442.1| Substrate-binding region of ABC-type glycine betaine transport
system [Roseobacter sp. AzwK-3b]
Length = 309
Score = 215 bits (548), Expect = 5e-54, Method: Composition-based stats.
Identities = 128/287 (44%), Positives = 187/287 (65%), Gaps = 3/287 (1%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGY 82
+C V F+D GWTDI ATTA T+ +L + LGY+T+IK+L+VPVT+ S+ ID+F+G
Sbjct: 22 ANCETVTFSDVGWTDITATTAATTTVL-QALGYETDIKVLSVPVTYTSMAQGDIDVFLGN 80
Query: 83 WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKI 142
W P++E IAPY E G++ V NL+GAKY LA N G ALGI + I ++ + L I
Sbjct: 81 WMPTMEGDIAPYREAGTVDTVRANLEGAKYTLATNAAGAALGITDFAKIVEHAEALDNTI 140
Query: 143 YGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP 202
YGIEPGN+GN+ I+DMI + F L F + E+SE +Q+ R R + P +FL WEPHP
Sbjct: 141 YGIEPGNDGNRLIMDMIADGAFGLTDFEVKESSEQGMLAQVARATRRDEPIIFLGWEPHP 200
Query: 203 INSDLNIHYLPGGEEISGF--GEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMK 260
+N++ + YL GG++ G G A+VYT + Y++ CPN+ +LL+N++F++A+ENE+M
Sbjct: 201 MNANFEMTYLTGGDDWFGPDLGGATVYTNTSAGYVETCPNVGKLLQNLEFTLAMENEIMG 260
Query: 261 LILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
ILN+ D L+ +P +L+ WL GVTT DG D ++ +
Sbjct: 261 AILNDGTDPAEAATAWLQANPGILETWLDGVTTIDGGDAMAAVKADL 307
>gi|224825574|ref|ZP_03698679.1| choline ABC transporter, periplasmic binding protein [Lutiella
nitroferrum 2002]
gi|224602495|gb|EEG08673.1| choline ABC transporter, periplasmic binding protein [Lutiella
nitroferrum 2002]
Length = 316
Score = 215 bits (548), Expect = 5e-54, Method: Composition-based stats.
Identities = 114/308 (37%), Positives = 175/308 (56%), Gaps = 3/308 (0%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+ + L L+ ++A D +SCT +R + GW DI+AT A+ ++LE LGY
Sbjct: 7 FTLSCALLALSAGHAAWAADPESCTTIRMPEPGWADISATNAIAGIVLEA-LGYHQKADT 65
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
L+VP+ +R L+ D+F+G W P+ + + L++GSI + NL AK+ LAV
Sbjct: 66 LSVPIIYRGLQMGQADVFLGNWMPAQKPMVEGPLQDGSIVSLQSNLDQAKFTLAVPSYVA 125
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
A G+KS+ D+ K+ G KIYGIE G N+ I +MI F+L ++L+E+SE S
Sbjct: 126 AAGVKSFADLQKHADRFGHKIYGIEAGAPANRNIQNMIKAKDFNLGDWQLVESSEAGMLS 185
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCP 239
Q+ R VFL+WEPH +N+ ++YL GG+ +G ASV+TV R + +CP
Sbjct: 186 QVTRKVAAKDFVVFLAWEPHAMNTKFKLNYLAGGDAYFGPNYGSASVHTVTRKGFASQCP 245
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDP 299
N +L +KF+V LEN ++ IL+ KQD + R L+ P+LL +WL GV T G D
Sbjct: 246 NAGKLFAQMKFNVDLENRIISDILDKKQDAKVATRAALKQSPELLASWLAGVQTTQGGDG 305
Query: 300 SRQLERFM 307
+++ +
Sbjct: 306 LAAVKKAL 313
>gi|26987038|ref|NP_742463.1| glycine betaine/L-proline ABC transporter, periplasmic binding
protein [Pseudomonas putida KT2440]
gi|148545571|ref|YP_001265673.1| glycine betaine ABC transporter substrate-binding protein
[Pseudomonas putida F1]
gi|24981658|gb|AAN65927.1|AE016220_9 glycine betaine/L-proline ABC transporter, periplasmic binding
protein [Pseudomonas putida KT2440]
gi|148509629|gb|ABQ76489.1| Substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas putida F1]
Length = 315
Score = 215 bits (548), Expect = 5e-54, Method: Composition-based stats.
Identities = 120/292 (41%), Positives = 179/292 (61%), Gaps = 6/292 (2%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNK-GIDIF 79
+ + C VRF+D GWTDI TTA TSV+LE LGYKT+ +++VPVT++SL +D+F
Sbjct: 23 EPEQCQTVRFSDVGWTDITVTTATTSVVLEA-LGYKTHTTMISVPVTYKSLATGKDLDVF 81
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
+G W P++E I Y + G+++ V NL+ AKY LAV + G+K + DI K+KKEL
Sbjct: 82 LGNWMPTMENDIKQYRDAGTVETVRANLENAKYTLAVPQALYDKGLKDFSDIPKFKKELD 141
Query: 140 AKIYGIEPGNEGNQRILDMIN--NNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLS 197
KIYGIEPGN+GN+ I MI+ GF+++++SE SQ+ R Q+ VFL
Sbjct: 142 GKIYGIEPGNDGNRTIQSMIDKNAFGLKDAGFKIVQSSEAGMLSQVDRAQKRGEALVFLG 201
Query: 198 WEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
WEPHP+N+ + YL GG++ FG+A+V T R Y +C N+ +LLKN+ F + E
Sbjct: 202 WEPHPMNTRFKMQYLTGGDDFFGPDFGKATVLTNTRKGYTQECSNVGQLLKNLSFELKDE 261
Query: 256 NEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ MM +L++K + + ++ +P L WL GVTT DG+ ++ +
Sbjct: 262 STMMGYVLDDKMKPEAAAKKWIKDNPGKLDAWLAGVTTVDGKPGLEAVKAKL 313
>gi|161520120|ref|YP_001583547.1| choline ABC transporter, periplasmic binding protein [Burkholderia
multivorans ATCC 17616]
gi|189353701|ref|YP_001949328.1| glycine betaine/proline transport system substrate-binding protein
[Burkholderia multivorans ATCC 17616]
gi|160344170|gb|ABX17255.1| choline ABC transporter, periplasmic binding protein [Burkholderia
multivorans ATCC 17616]
gi|189337723|dbj|BAG46792.1| glycine betaine/proline transport system substrate-binding protein
[Burkholderia multivorans ATCC 17616]
Length = 320
Score = 215 bits (548), Expect = 5e-54, Method: Composition-based stats.
Identities = 108/290 (37%), Positives = 168/290 (57%), Gaps = 3/290 (1%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFM 80
+ +C VR A GWTDI AT AM V+L+ LGY+ ++ L+VP+T++ LK +D+F+
Sbjct: 30 EPQTCRDVRMAAPGWTDIDATNAMAGVVLKA-LGYRQDVANLSVPITYQGLKKGQVDVFL 88
Query: 81 GYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGA 140
G W P+ + P+++E SI ++ NL GAK+ LAV D A G+ ++ D+A+Y G
Sbjct: 89 GNWMPAQAPLVKPFVDEKSIDVLHANLSGAKFTLAVPDYVAAAGVHTFADLARYADRFGD 148
Query: 141 KIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEP 200
KIYGIEPG NQ I M++++ + L+E+SE +Q+ R R+ VFL+WEP
Sbjct: 149 KIYGIEPGAPANQNIKRMLSDHALGSANWSLVESSETGMLTQVERAVRDKRWIVFLAWEP 208
Query: 201 HPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEM 258
H +N+ + YL GG+ +G A+V TV R+ + D+C N++RL + + FSV +EN M
Sbjct: 209 HLMNTKFKLTYLSGGDAYFGPNYGGATVNTVARAGFADQCTNLARLFRQMTFSVDVENRM 268
Query: 259 MKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
+ +L K + L+ P L+ WL GVTT G + ++
Sbjct: 269 IADMLEKKTSPALAAQHALKADPSLVAGWLDGVTTATGAPGLPAVRAALD 318
>gi|315122234|ref|YP_004062723.1| substrate-binding region of ABC-type glycine betaine transport
system [Candidatus Liberibacter solanacearum CLso-ZC1]
gi|313495636|gb|ADR52235.1| substrate-binding region of ABC-type glycine betaine transport
system [Candidatus Liberibacter solanacearum CLso-ZC1]
Length = 310
Score = 215 bits (546), Expect = 8e-54, Method: Composition-based stats.
Identities = 233/310 (75%), Positives = 276/310 (89%), Gaps = 1/310 (0%)
Query: 1 MYKILAVCLFLT-TFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
MYK+L +F + FS+ YA+D+D C PV F+DTGWTDI TT+MTSVILEEILGYKTNI
Sbjct: 1 MYKVLGFIVFFSTAFSMGYAKDSDFCAPVHFSDTGWTDITTTTSMTSVILEEILGYKTNI 60
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
KLL++PVT R+LKNK ID+FMGYWYPS EK IAPY++EGSIK+VAENLQGAKYMLAVND
Sbjct: 61 KLLSMPVTLRALKNKDIDVFMGYWYPSHEKSIAPYVKEGSIKVVAENLQGAKYMLAVNDA 120
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
GFALGIKSYQDIAKY ++LG KIYGI+PGN GNQRILDMI ++KFSLK FRLIEASE AS
Sbjct: 121 GFALGIKSYQDIAKYSQQLGYKIYGIDPGNNGNQRILDMIQSDKFSLKNFRLIEASEQAS 180
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
F+Q+RR+Q+NNIPAVFLSWEPHPIN DLNIHYL GGE+ISGFG+ASVYTVVRSDY+DKCP
Sbjct: 181 FAQVRRNQKNNIPAVFLSWEPHPINLDLNIHYLLGGEDISGFGKASVYTVVRSDYIDKCP 240
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDP 299
N+ RLLKNIKFSVALENEMMKL+L++K+D + VGR +LR++PDLLK WL+GVT F+G+DP
Sbjct: 241 NVGRLLKNIKFSVALENEMMKLVLHDKKDPKSVGRDILRSNPDLLKGWLVGVTRFNGEDP 300
Query: 300 SRQLERFMNN 309
++E+F+ N
Sbjct: 301 LSEVEKFIKN 310
>gi|254182318|ref|ZP_04888913.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 1655]
gi|184212854|gb|EDU09897.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 1655]
Length = 345
Score = 215 bits (546), Expect = 9e-54, Method: Composition-based stats.
Identities = 107/286 (37%), Positives = 166/286 (58%), Gaps = 3/286 (1%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWY 84
C VR A GWTDI AT A+ V+L+ LGY+ ++ L+VP+T++ LK +D+F+G W
Sbjct: 59 CRDVRMAGPGWTDIEATNALAGVVLKA-LGYRQSVSNLSVPITYQGLKKGQLDVFLGNWM 117
Query: 85 PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYG 144
P+ + P+++ +I ++ NL AK+ LAV D A G+ S+ D+AKY + GAKIYG
Sbjct: 118 PAQAPLVKPFVDARAIDVLHANLSHAKFTLAVPDYVAAAGVHSFADLAKYAQRFGAKIYG 177
Query: 145 IEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPIN 204
IEPG NQ I M+ + ++L+E+SE +Q+ R R VFL WEPH +N
Sbjct: 178 IEPGAPANQNISRMLADKALGPANWQLVESSETGMLTQVERAVRERQWIVFLGWEPHLMN 237
Query: 205 SDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI 262
+ ++ YL GG+ +G A+V TV R+D+ +C N++RL + + F+V LEN M+ +
Sbjct: 238 TKFHLVYLSGGDAYFGPNYGGATVNTVTRADFASQCANLARLFRQMTFTVDLENGMIAAM 297
Query: 263 LNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
L K+ + LR +P L++ WL GV T G + ++
Sbjct: 298 LQGKRSAVDAAQHALRENPSLVEAWLDGVRTASGAPGLPAVRAALD 343
>gi|167905676|ref|ZP_02492881.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei NCTC 13177]
Length = 345
Score = 215 bits (546), Expect = 1e-53, Method: Composition-based stats.
Identities = 107/286 (37%), Positives = 167/286 (58%), Gaps = 3/286 (1%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWY 84
C VR A GWTDI AT A+ V+L+ LGY+ ++ L+VP+T++ LK +D+F+G W
Sbjct: 59 CRDVRMAGPGWTDIEATNALAGVVLKA-LGYRQSVSNLSVPITYQGLKKGQLDVFLGNWM 117
Query: 85 PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYG 144
P+ + P+++ +I ++ NL AK+ LAV D A G+ S+ D+AKY + GAKIYG
Sbjct: 118 PAQAPLVKPFVDARAIDVLHANLSHAKFTLAVPDYVAAAGVHSFADLAKYAQRFGAKIYG 177
Query: 145 IEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPIN 204
IEPG NQ I M+ + ++L+E+SE +Q+ R R VFL WEPH +N
Sbjct: 178 IEPGAPANQNISRMLADKALGPANWQLVESSETGMLTQVERAVRERQWIVFLGWEPHLMN 237
Query: 205 SDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI 262
+ ++ YL GG+ +G A+V TV R+D+ +C N++RL + + F+V LEN M+ +
Sbjct: 238 TKFHLVYLSGGDAYFGPNYGGATVNTVARADFASQCANLARLFRQMTFTVDLENGMIAAM 297
Query: 263 LNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
L +K+ + LR +P L++ WL GV T G + ++
Sbjct: 298 LQDKRSAVDAAQHALRANPALVEAWLDGVRTASGAPGLPAVRAALD 343
>gi|254250010|ref|ZP_04943330.1| ABC-type proline/glycine betaine transport systems, periplasmic
components [Burkholderia cenocepacia PC184]
gi|124876511|gb|EAY66501.1| ABC-type proline/glycine betaine transport systems, periplasmic
components [Burkholderia cenocepacia PC184]
Length = 321
Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats.
Identities = 109/292 (37%), Positives = 170/292 (58%), Gaps = 3/292 (1%)
Query: 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDI 78
A D +C V+ A GWTDI AT AM V+L+ LGY+ ++ L+VP+T++ LK +D+
Sbjct: 29 AADPQTCDAVKMAAPGWTDIDATNAMAGVVLKA-LGYRQDVANLSVPITYQGLKKGQVDV 87
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL 138
F+G W P+ + P+++E SI ++ NL GAK+ LAV D A G+ ++ D+A+Y
Sbjct: 88 FLGNWMPAQAPLVKPFVDEKSIDVLHANLSGAKFTLAVPDYVAAAGVHTFADLARYADRF 147
Query: 139 GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
G KIYGIEPG NQ I M++++ + L+E+SE +Q+ R R+ VFL+W
Sbjct: 148 GGKIYGIEPGAPANQNIKRMLSDHVLGAANWSLVESSETGMLTQVERAVRDKRWIVFLAW 207
Query: 199 EPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALEN 256
EPH +N+ ++ YL GG+ +G A+V TV R + +C N++RL + + FSV +EN
Sbjct: 208 EPHLMNTKFHLTYLSGGDAYFGPNYGGATVNTVARVGFAGQCTNLARLFRQMTFSVDVEN 267
Query: 257 EMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
M+ +L+NK + L+ P L+ WL GVTT G + ++
Sbjct: 268 RMIADMLDNKISPALAAQHALKAEPALVAGWLDGVTTAAGAPGLPAVRAALD 319
>gi|254187381|ref|ZP_04893894.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
pseudomallei Pasteur 52237]
gi|157935062|gb|EDO90732.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
pseudomallei Pasteur 52237]
Length = 345
Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats.
Identities = 107/286 (37%), Positives = 167/286 (58%), Gaps = 3/286 (1%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWY 84
C VR A GWTDI AT A+ V+L+ LGY+ ++ L+VP+T++ LK +D+F+G W
Sbjct: 59 CRDVRMAGPGWTDIEATNALAGVVLKA-LGYRQSVSNLSVPITYQGLKKGQLDVFLGNWM 117
Query: 85 PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYG 144
P+ + P+++ +I ++ NL AK+ LAV D A G+ S+ D+AKY + GAKIYG
Sbjct: 118 PAQAPLVKPFVDARAIDVLHANLSHAKFTLAVPDYVAAAGVHSFADLAKYAQRFGAKIYG 177
Query: 145 IEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPIN 204
IEPG NQ I M+ + ++L+E+SE +Q+ R R VFL WEPH +N
Sbjct: 178 IEPGAPANQNISRMLADKALGPANWQLVESSETGMLTQVERAVRERQWIVFLGWEPHLMN 237
Query: 205 SDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI 262
+ ++ YL GG+ +G A+V TV R+D+ +C N++RL + + F+V LEN M+ +
Sbjct: 238 TKFHLVYLSGGDAYFGPDYGGATVNTVARADFASQCANLARLFRQMTFTVDLENGMIAAM 297
Query: 263 LNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
L +K+ + LR +P L++ WL GV T G + ++
Sbjct: 298 LQDKRSAVDAAQHALRANPALVEAWLDGVRTASGAPGLPAVRAALD 343
>gi|313496660|gb|ADR58026.1| Glycine betaine/L-proline ABC transporter, periplasmic binding
protein [Pseudomonas putida BIRD-1]
Length = 315
Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats.
Identities = 121/292 (41%), Positives = 179/292 (61%), Gaps = 6/292 (2%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNK-GIDIF 79
+ + C VRF+D GWTDI TTA TSV+LE LGYKT+ +++VPVT++SL +D+F
Sbjct: 23 EPEQCQTVRFSDVGWTDITVTTATTSVVLEA-LGYKTHTTMISVPVTYKSLATGKDLDVF 81
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
+G W P++E I Y + G+++ V NL+ AKY LAV + G+K + DI K+KKEL
Sbjct: 82 LGNWMPTMENDIKQYRDAGTVETVRANLENAKYTLAVPQALYDKGLKDFSDIPKFKKELN 141
Query: 140 AKIYGIEPGNEGNQRILDMIN--NNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLS 197
KIYGIEPGN+GN+ I MI+ GF+++++SE SQ+ R Q+ VFL
Sbjct: 142 GKIYGIEPGNDGNRTIQSMIDKNAFGLKDAGFKIVQSSEAGMLSQVDRAQKRGEALVFLG 201
Query: 198 WEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
WEPHP+N+ + YL GG+E FG+A+V T R Y +C N+ +LLKN+ F + E
Sbjct: 202 WEPHPMNTRFKMQYLTGGDEFFGPDFGKATVLTNTRKGYTQECSNVGQLLKNLSFELKDE 261
Query: 256 NEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ MM +L++K + + ++ +P L WL GVTT DG+ ++ +
Sbjct: 262 STMMGYVLDDKMKPEAAAKKWIKDNPGKLDAWLAGVTTVDGKPGLEAVKAKL 313
>gi|319784324|ref|YP_004143800.1| choline ABC transporter periplasmic binding protein [Mesorhizobium
ciceri biovar biserrulae WSM1271]
gi|317170212|gb|ADV13750.1| choline ABC transporter, periplasmic binding protein [Mesorhizobium
ciceri biovar biserrulae WSM1271]
Length = 312
Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats.
Identities = 111/313 (35%), Positives = 177/313 (56%), Gaps = 9/313 (2%)
Query: 1 MYKILAVCLFLTTFSISY----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
M +ILA + L ++ A +A+ C VR A+ GW D+A TT + +V+LE LGY+
Sbjct: 1 MLRILANGVCLAGLMLATHAAQAAEAEECKTVRMAEPGWNDLAFTTGVANVLLEA-LGYQ 59
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
++L + V + +KN+ +D+F+GYW P++ + PY ++GS++ V NL GAKY AV
Sbjct: 60 PQSQVLGINVIYEGMKNRDLDLFLGYWDPAMVTYYEPYKKDGSVENVRVNLVGAKYTFAV 119
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ G+K D+ K+ + G K+YGIEPG NQ ++D I + F L G++++E+SE
Sbjct: 120 PTYVWEAGVKDISDLHKFADKFGKKMYGIEPG--SNQLMMDAIADPAFGLDGWQVVESSE 177
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDY 234
S++ + + VF W PHP+N + YL GG++ FG A+V T VR Y
Sbjct: 178 AGMLSEVGYEIKEKQFIVFQGWAPHPMNMMYDFKYLTGGDKFFGPNFGAATVTTQVRKGY 237
Query: 235 LDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTF 294
L +CPN+++ LKN+ F + EN M ++N+ + + + L WL GVTTF
Sbjct: 238 LQQCPNVAQFLKNLAFDIDFENVGMGYLINDGMKPEDGALKAITANKSRLDAWLAGVTTF 297
Query: 295 DGQDPSRQLERFM 307
DGQ ++ +
Sbjct: 298 DGQPGLAAVKEKL 310
>gi|167913981|ref|ZP_02501072.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 112]
Length = 297
Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats.
Identities = 107/286 (37%), Positives = 167/286 (58%), Gaps = 3/286 (1%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWY 84
C VR A GWTDI AT A+ V+L+ LGY+ ++ L+VP+T++ LK +D+F+G W
Sbjct: 11 CRDVRMAGPGWTDIEATNALAGVVLKA-LGYRQSVSNLSVPITYQGLKKGQLDVFLGNWM 69
Query: 85 PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYG 144
P+ + P+++ +I ++ NL AK+ LAV D A G+ S+ D+AKY + GAKIYG
Sbjct: 70 PAQAPLVKPFVDARAIDVLHANLSHAKFTLAVPDYVAAAGVHSFADLAKYAQRFGAKIYG 129
Query: 145 IEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPIN 204
IEPG NQ I M+ + ++L+E+SE +Q+ R R VFL WEPH +N
Sbjct: 130 IEPGAPANQNISRMLADKALGPANWQLVESSETGMLTQVERAVRERQWIVFLGWEPHLMN 189
Query: 205 SDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI 262
+ ++ YL GG+ +G A+V TV R+D+ +C N++RL + + F+V LEN M+ +
Sbjct: 190 TKFHLVYLSGGDAYFGPDYGGATVNTVARADFASQCANLARLFRQMTFTVDLENGMIAAM 249
Query: 263 LNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
L +K+ + LR +P L++ WL GV T G + ++
Sbjct: 250 LQDKRSAVDAAQHALRANPALVEAWLDGVRTASGAPGLPAVRAALD 295
>gi|254487025|ref|ZP_05100230.1| substrate-binding region of ABC-type glycine betaine transport
system [Roseobacter sp. GAI101]
gi|214043894|gb|EEB84532.1| substrate-binding region of ABC-type glycine betaine transport
system [Roseobacter sp. GAI101]
Length = 324
Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats.
Identities = 126/283 (44%), Positives = 182/283 (64%), Gaps = 3/283 (1%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWY 84
C + F+D GWTDI ATTA T+V+L + LGY+T+IK+L+VPVT+ ++ +D+F+G W
Sbjct: 40 CDEITFSDVGWTDITATTAATTVVL-QTLGYETDIKILSVPVTYTAMAAGDVDVFLGNWM 98
Query: 85 PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYG 144
P++E IAPY + G++ V NL GAKY LAVN +GI ++ IA L IYG
Sbjct: 99 PTMEADIAPYRDAGTVDTVRANLNGAKYTLAVNKAAADMGITTFGAIAANADALDGTIYG 158
Query: 145 IEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPIN 204
IEPGN+GN+ I MI+ N F LK F + E+SE +Q++R P VFL WEPHP+N
Sbjct: 159 IEPGNDGNRLIQSMIDANAFDLKDFEVKESSEQGMLAQVKRATAKGEPVVFLGWEPHPMN 218
Query: 205 SDLNIHYLPGGEEISGF--GEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI 262
++ + YL GG++ G G ASVYT R+ Y+ +CPN+ +LL N++F++A+ENE+M I
Sbjct: 219 ANFELTYLEGGDDYFGPDLGGASVYTNTRAGYVAECPNVGKLLNNLEFTLAMENEIMGAI 278
Query: 263 LNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLER 305
L++ QD ++ +P +L+ WL GVTT DG D +
Sbjct: 279 LDDGQDPDEAATAWIKANPAVLETWLAGVTTVDGGDAMAAAKS 321
>gi|53721597|ref|YP_110582.1| hypothetical protein BPSS0561 [Burkholderia pseudomallei K96243]
gi|254198719|ref|ZP_04905139.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei S13]
gi|52212011|emb|CAH38018.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
gi|169655458|gb|EDS88151.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei S13]
Length = 332
Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats.
Identities = 107/286 (37%), Positives = 166/286 (58%), Gaps = 3/286 (1%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWY 84
C VR A GWTDI AT A+ V+L+ LGY+ ++ L+VP+T++ LK +D+F+G W
Sbjct: 46 CRDVRMAGPGWTDIEATNALAGVVLKA-LGYRQSVSNLSVPITYQGLKKGQLDVFLGNWM 104
Query: 85 PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYG 144
P+ + P+++ +I ++ NL AK+ LAV D A G+ S+ D+AKY + GAKIYG
Sbjct: 105 PAQAPLVKPFVDARAIDVLHANLSHAKFTLAVPDYVAAAGVHSFADLAKYAQRFGAKIYG 164
Query: 145 IEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPIN 204
IEPG NQ I M+ + ++L+E+SE +Q+ R R VFL WEPH +N
Sbjct: 165 IEPGAPANQNISRMLADKALGPANWQLVESSETGMLTQVERAVRERQWIVFLGWEPHLMN 224
Query: 205 SDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI 262
+ ++ YL GG+ +G A+V TV R+D+ +C N++RL + + F+V LEN M+ +
Sbjct: 225 TKFHLVYLSGGDAYFGPDYGGATVNTVARADFASQCANLARLFRQMTFTVDLENGMIAAM 284
Query: 263 LNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
L K+ + LR +P L++ WL GV T G + ++
Sbjct: 285 LQGKRSAVDAAQHALRANPSLVEAWLDGVRTASGAPGLPAVRAALD 330
>gi|126442805|ref|YP_001061841.1| quaternary amine ABC transporter periplasmic substrate-binding
protein [Burkholderia pseudomallei 668]
gi|126457569|ref|YP_001074790.1| quaternary amine ABC transporter periplasmic substrate-binding
protein [Burkholderia pseudomallei 1106a]
gi|167818856|ref|ZP_02450536.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 91]
gi|167848723|ref|ZP_02474231.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei B7210]
gi|167897315|ref|ZP_02484717.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 7894]
gi|167921894|ref|ZP_02508985.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei BCC215]
gi|217425563|ref|ZP_03457056.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 576]
gi|226194913|ref|ZP_03790504.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei Pakistan 9]
gi|237509770|ref|ZP_04522485.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei MSHR346]
gi|242313986|ref|ZP_04813003.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 1106b]
gi|254263403|ref|ZP_04954268.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 1710a]
gi|254299822|ref|ZP_04967270.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 406e]
gi|126222296|gb|ABN85801.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 668]
gi|126231337|gb|ABN94750.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 1106a]
gi|157809759|gb|EDO86929.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 406e]
gi|217391526|gb|EEC31555.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 576]
gi|225932718|gb|EEH28714.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei Pakistan 9]
gi|235001975|gb|EEP51399.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei MSHR346]
gi|242137225|gb|EES23628.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 1106b]
gi|254214405|gb|EET03790.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 1710a]
Length = 345
Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats.
Identities = 107/286 (37%), Positives = 166/286 (58%), Gaps = 3/286 (1%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWY 84
C VR A GWTDI AT A+ V+L+ LGY+ ++ L+VP+T++ LK +D+F+G W
Sbjct: 59 CRDVRMAGPGWTDIEATNALAGVVLKA-LGYRQSVSNLSVPITYQGLKKGQLDVFLGNWM 117
Query: 85 PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYG 144
P+ + P+++ +I ++ NL AK+ LAV D A G+ S+ D+AKY + GAKIYG
Sbjct: 118 PAQAPLVKPFVDARAIDVLHANLSHAKFTLAVPDYVAAAGVHSFADLAKYAQRFGAKIYG 177
Query: 145 IEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPIN 204
IEPG NQ I M+ + ++L+E+SE +Q+ R R VFL WEPH +N
Sbjct: 178 IEPGAPANQNISRMLADKALGPANWQLVESSETGMLTQVERAVRERQWIVFLGWEPHLMN 237
Query: 205 SDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI 262
+ ++ YL GG+ +G A+V TV R+D+ +C N++RL + + F+V LEN M+ +
Sbjct: 238 TKFHLVYLSGGDAYFGPDYGGATVNTVARADFASQCANLARLFRQMTFTVDLENGMIAAM 297
Query: 263 LNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
L K+ + LR +P L++ WL GV T G + ++
Sbjct: 298 LQGKRSAVDAAQHALRANPSLVEAWLDGVRTASGAPGLPAVRAALD 343
>gi|186472146|ref|YP_001859488.1| choline ABC transporter, periplasmic binding protein [Burkholderia
phymatum STM815]
gi|184194478|gb|ACC72442.1| choline ABC transporter, periplasmic binding protein [Burkholderia
phymatum STM815]
Length = 316
Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats.
Identities = 120/291 (41%), Positives = 179/291 (61%), Gaps = 5/291 (1%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
+D +C V FAD GWTDI +TTA+ S + E LGY+ + +VP++F LK+K +D+
Sbjct: 26 QDPPTCRAVHFADIGWTDITSTTALASTVFE-GLGYQPVTTVASVPISFAGLKSKQLDVS 84
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLV-AENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL 138
+GYW+P EK IAP++E SI ++ NL GAK AV + G+K++ DIAK++ EL
Sbjct: 85 LGYWWPVQEKAIAPFVEAKSINVLQPPNLTGAKATFAVPTYEYDAGLKTFADIAKHRAEL 144
Query: 139 GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
KIYGIEPG+ N I MI N+F L GF+LIE+SE + R R VFL W
Sbjct: 145 DGKIYGIEPGSSANAAIQKMIATNQFGLGGFKLIESSEAGMLVTVDRAVREKKWVVFLGW 204
Query: 199 EPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALEN 256
+PHP+N +++ YL G E + GEA VYT+ D+L +CPN +L+ N++F+ LEN
Sbjct: 205 QPHPMNIQIDMKYLSGSEGVFGPNDGEARVYTLTSPDFLTRCPNAGKLVSNLRFTTQLEN 264
Query: 257 EMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+M+ ++ NK+ + L+ +P +L WL GV T+DG+D ++ ++
Sbjct: 265 VVMQSVM-NKEKPSEAAKAYLKKNPQVLDEWLAGVKTYDGKDGLPAVKAYL 314
>gi|254441323|ref|ZP_05054816.1| ABC transporter, QAT family, substrate-binding protein, putative
[Octadecabacter antarcticus 307]
gi|198251401|gb|EDY75716.1| ABC transporter, QAT family, substrate-binding protein, putative
[Octadecabacter antarcticus 307]
Length = 311
Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats.
Identities = 133/312 (42%), Positives = 194/312 (62%), Gaps = 6/312 (1%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M L++ ++S AD C V F+D GWTDI ATTA T+V+L + LGY+T+IK
Sbjct: 1 MKSTLSILAICAAGAVSADGHAD-CGLVTFSDVGWTDITATTAATTVVL-DALGYETDIK 58
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+L+VPVT+ SL +D+F+G W P++E IAPY E+GS+ V NL GAKY LA N G
Sbjct: 59 VLSVPVTYTSLAEGDVDVFLGNWMPTMEADIAPYREDGSVDTVRANLTGAKYTLATNAAG 118
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI--NNNKFSLKGFRLIEASELA 178
ALGI S+ IA L KIYGIE GN+GN+ I+DMI + ++E+SE
Sbjct: 119 AALGITSFDAIAANADALEGKIYGIEAGNDGNRLIIDMIASDAFGLDGADMEVVESSEAG 178
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF--GEASVYTVVRSDYLD 236
+Q+ R + P VFL WEPHP+N++ ++ YL GG++ G G A+V+T + Y+D
Sbjct: 179 MLTQVGRASDRDEPIVFLGWEPHPMNANYDMTYLEGGDDWFGPDLGGATVFTNTTAGYVD 238
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDG 296
CPN+ +LL+N++F++A+ENE+M ILN+ D + L + D++ WL GVTT DG
Sbjct: 239 ACPNVGKLLQNLEFTLAMENEIMGAILNDGTDPRDAATAWLVGNTDVVMGWLDGVTTLDG 298
Query: 297 QDPSRQLERFMN 308
D + ++ ++
Sbjct: 299 GDAAVAVQAALD 310
>gi|85704304|ref|ZP_01035407.1| putative glycine betaine-binding abc transporter protein
[Roseovarius sp. 217]
gi|85671624|gb|EAQ26482.1| putative glycine betaine-binding abc transporter protein
[Roseovarius sp. 217]
Length = 309
Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats.
Identities = 136/277 (49%), Positives = 188/277 (67%), Gaps = 3/277 (1%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYW 83
+C V FAD GWTDI ATTA T+V+LE LGY+T+IK+L+VPVT+ SL ID+F+G W
Sbjct: 23 NCDSVTFADVGWTDITATTAATTVVLEA-LGYETDIKVLSVPVTYTSLAAGDIDVFLGNW 81
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIY 143
P++E IAPY E G++ V NL+GAKY LA N G ALGI S+ IA++ + L + IY
Sbjct: 82 MPTMEGDIAPYREAGTVDTVRANLEGAKYTLATNAAGAALGISSFDTIAQHAEALDSTIY 141
Query: 144 GIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPI 203
GIEPGN+GN+ ILDMI + F LKGF + E+SE +Q+ R R P VFL WEPHP+
Sbjct: 142 GIEPGNDGNRLILDMITADAFGLKGFEVKESSEQGMLAQVTRADRREEPIVFLGWEPHPM 201
Query: 204 NSDLNIHYLPGGEEISGF--GEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKL 261
N++ ++ YL GG++ G G A+V+T R+ Y +C N+ +LL+N++F++A+ENE+M
Sbjct: 202 NANHDMTYLTGGDDWFGPDLGGATVFTNTRAGYAAECGNVGKLLENLEFTLAMENEIMGA 261
Query: 262 ILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
ILN+ + L+ +PD + WL GVTT DG D
Sbjct: 262 ILNDGAKPEEAASAWLKANPDAISPWLDGVTTKDGGD 298
>gi|167741665|ref|ZP_02414439.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 14]
Length = 304
Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats.
Identities = 107/286 (37%), Positives = 166/286 (58%), Gaps = 3/286 (1%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWY 84
C VR A GWTDI AT A+ V+L+ LGY+ ++ L+VP+T++ LK +D+F+G W
Sbjct: 18 CRDVRMAGPGWTDIEATNALAGVVLKA-LGYRQSVSNLSVPITYQGLKKGQLDVFLGNWM 76
Query: 85 PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYG 144
P+ + P+++ +I ++ NL AK+ LAV D A G+ S+ D+AKY + GAKIYG
Sbjct: 77 PAQAPLVKPFVDARAIDVLHANLSHAKFTLAVPDYVAAAGVHSFADLAKYAQRFGAKIYG 136
Query: 145 IEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPIN 204
IEPG NQ I M+ + ++L+E+SE +Q+ R R VFL WEPH +N
Sbjct: 137 IEPGAPANQNISRMLADKALGPANWQLVESSETGMLTQVERAVRERQWIVFLGWEPHLMN 196
Query: 205 SDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI 262
+ ++ YL GG+ +G A+V TV R+D+ +C N++RL + + F+V LEN M+ +
Sbjct: 197 TKFHLVYLSGGDAYFGPDYGGATVNTVARADFASQCANLARLFRQMTFTVDLENGMIAAM 256
Query: 263 LNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
L K+ + LR +P L++ WL GV T G + ++
Sbjct: 257 LQGKRSAVDAAQHALRANPALVEAWLDGVRTASGAPGLPAVRAALD 302
>gi|146305536|ref|YP_001186001.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas mendocina ymp]
gi|145573737|gb|ABP83269.1| Substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas mendocina ymp]
Length = 312
Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats.
Identities = 118/314 (37%), Positives = 178/314 (56%), Gaps = 8/314 (2%)
Query: 1 MYKILAVCLFLTTFSISY---ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M + A+ T S A + SC R GWTD+ ATTA+ + +LE LGY+T
Sbjct: 1 MKGLTALAACCTLSLFSSSLLAAEDASCQKARIGLVGWTDVVATTAVAANLLE-GLGYQT 59
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAV 116
+ + F + K +D F+GYW P ++ I P+ ++G +K++A L LAV
Sbjct: 60 TQTQASQQIIFSGIGKKQVDFFLGYWKPLMDDNIKPFQDKGEVKVLAEPGLSDGISSLAV 119
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
G+++Y DIAK++ +L KIYGI+PG N I MI+ N+F L GF+L+E+SE
Sbjct: 120 PTYLAEAGLRTYADIAKFRDQLEGKIYGIDPGTGANTTIQKMIDTNQFGLGGFKLVESSE 179
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDY 234
A + + R + P VF W+PHP+N +++ YL G E++ G A+V+TVV DY
Sbjct: 180 AAMLAAVSRAVKAKKPVVFFGWKPHPMNIKMDLTYLTGSEDVFGADEGLATVWTVVAPDY 239
Query: 235 LDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTF 294
+CPN+ RLL N+ FS A E+E+M+ I+ ++D + V R L+ +P L L GVTTF
Sbjct: 240 AQRCPNVDRLLNNLTFSAAQESELMEPIMA-REDAKAVARRWLKENPQDLDRLLAGVTTF 298
Query: 295 DGQDPSRQLERFMN 308
DGQD + ++
Sbjct: 299 DGQDGVAAVRAALD 312
>gi|325273146|ref|ZP_08139442.1| choline ABC transporter periplasmic binding protein [Pseudomonas
sp. TJI-51]
gi|324101721|gb|EGB99271.1| choline ABC transporter periplasmic binding protein [Pseudomonas
sp. TJI-51]
Length = 315
Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats.
Identities = 124/292 (42%), Positives = 181/292 (61%), Gaps = 6/292 (2%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNK-GIDIF 79
+ + C VRF+D GWTDI TTA TSV+LE LGYKT+ +++VPVT++SL +D+F
Sbjct: 23 EPEQCQTVRFSDVGWTDITVTTATTSVVLEA-LGYKTHTTMISVPVTYKSLATGKDLDVF 81
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
+G W P++E I Y + G++ V NL+ AKY LAV + G+K + DIAK+K+ELG
Sbjct: 82 LGNWMPTMENDIKQYRDAGTVDTVRANLENAKYTLAVPQALYDKGLKDFSDIAKFKQELG 141
Query: 140 AKIYGIEPGNEGNQRILDMIN--NNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLS 197
KIYGIEPGN+GN+ I MI+ GF+L+++SE SQ+ R Q+ VFL
Sbjct: 142 GKIYGIEPGNDGNRTIQSMIDKNAFGLKDAGFKLVQSSEAGMLSQVDRAQKRGEAMVFLG 201
Query: 198 WEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
WEPHP+N+ + YL GG++ FG+A+VYT R Y+ +C N+ +LLKN+ F + E
Sbjct: 202 WEPHPMNTRFKMQYLTGGDDYFGPDFGKATVYTNTRKGYVQECSNVGQLLKNLSFELKDE 261
Query: 256 NEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ MM +L++K + + L+ +P L WL GVTT DG+ + +
Sbjct: 262 STMMGYVLDDKMKPEAAAKKWLKDNPGKLDTWLAGVTTVDGKPGLEAAKAKL 313
>gi|330812273|ref|YP_004356735.1| glycine betaine/L-proline ABC transporter periplasmic protein
[Pseudomonas brassicacearum subsp. brassicacearum
NFM421]
gi|327380381|gb|AEA71731.1| putative glycine betaine/L-proline ABC transporter, periplasmic
component [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 315
Score = 212 bits (540), Expect = 4e-53, Method: Composition-based stats.
Identities = 121/298 (40%), Positives = 181/298 (60%), Gaps = 6/298 (2%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNK 74
++ A + C+ V F+D GWTDI TTA TSV+L + LGYKT +++VPVT++SL +
Sbjct: 17 MLANAAEPQQCSTVNFSDVGWTDITVTTATTSVVL-DALGYKTKTTMISVPVTYKSLADG 75
Query: 75 -GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAK 133
+D+F+G W P++E I Y E G+++ V NL+GAKY LAV + G+ + DI K
Sbjct: 76 KNMDVFLGNWMPTMENDIKAYREAGTVETVRTNLKGAKYTLAVPQALYDKGLHDFADIPK 135
Query: 134 YKKELGAKIYGIEPGNEGNQRILDMIN--NNKFSLKGFRLIEASELASFSQIRRDQRNNI 191
+KKEL KIYGIEPGN+GN+ I MI GF+++E+SE SQ+ R +
Sbjct: 136 FKKELDGKIYGIEPGNDGNRLIQSMIEKNAFGLKDAGFKVVESSEAGMLSQVDRAAKRGT 195
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
VFL W PHP+N+ I YL GG++ FG A+V T R Y +C N+ +LLKN++
Sbjct: 196 DVVFLGWAPHPMNTRFKIQYLTGGDDFFGPDFGAATVATNTRKGYSQECSNVGQLLKNLE 255
Query: 250 FSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
F+V +E+ +M +L++K + + L+ +P +L WL GVTT DG+ ++ +
Sbjct: 256 FTVDMESTLMGNVLDDKMKPEAAAKAWLKKNPQVLDTWLAGVTTIDGKPGLDAVKAKL 313
>gi|170724069|ref|YP_001751757.1| choline ABC transporter periplasmic binding protein [Pseudomonas
putida W619]
gi|169762072|gb|ACA75388.1| choline ABC transporter, periplasmic binding protein [Pseudomonas
putida W619]
Length = 315
Score = 212 bits (540), Expect = 4e-53, Method: Composition-based stats.
Identities = 121/292 (41%), Positives = 179/292 (61%), Gaps = 6/292 (2%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNK-GIDIF 79
+ + C VRF+D GWTDI TTA TSV+LE LGYKT+ +++VPVT++SL +D+F
Sbjct: 23 EPEQCQTVRFSDVGWTDITVTTATTSVVLEA-LGYKTHTTMISVPVTYKSLATGKDLDVF 81
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
+G W P++E I Y + G+++ V NL+ AKY LAV + G+K + DI K+KKEL
Sbjct: 82 LGNWMPTMENDIKQYRDAGTVETVRANLENAKYTLAVPQSLYDKGLKDFADIPKFKKELD 141
Query: 140 AKIYGIEPGNEGNQRILDMIN--NNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLS 197
KIYGIEPGN+GN+ I MI+ GF+++++SE SQ+ R Q+ VFL
Sbjct: 142 GKIYGIEPGNDGNRTIQSMIDKNAFGLKDAGFKIVQSSEAGMLSQVDRAQKRGDAIVFLG 201
Query: 198 WEPHPINSDLNIHYLPGGEEISGF--GEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
WEPHP+N+ + YL GG++ G G+A+V T R Y+ +C N+ +LLKN+ F + E
Sbjct: 202 WEPHPMNTRFKMQYLTGGDDFFGPELGKATVLTNTRKGYVQECSNVGQLLKNLSFELKDE 261
Query: 256 NEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ MM +L++K + + L+ +P L WL GVTT DG+ + +
Sbjct: 262 STMMGYVLDDKMKPEAAAKKWLKDNPGKLDAWLAGVTTVDGKPGLEAAKAKL 313
>gi|229593047|ref|YP_002875166.1| hypothetical protein PFLU5673 [Pseudomonas fluorescens SBW25]
gi|229364913|emb|CAY53001.1| putative exported protein [Pseudomonas fluorescens SBW25]
Length = 314
Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats.
Identities = 114/312 (36%), Positives = 180/312 (57%), Gaps = 10/312 (3%)
Query: 1 MYKILAVCLFLTTFSI-----SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M +++ C+ + S A DA SC VR WTD+ AT+AMT V+L + LGY
Sbjct: 1 MNRLIRRCVLALSASAILSTHVMAADAASCQNVRMGVVNWTDVIATSAMTQVLL-DGLGY 59
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYML 114
KT + + F ++++ +D+F+GYW P + + I P+++ +K++ +L+ A+ L
Sbjct: 60 KTKQTSASQQIIFAGIRDQRLDLFLGYWNPLMTQTITPFVDAKQVKVLDKPSLEDARATL 119
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
AV G+K++ DIAK++KELG KIYGIEPG+ N +I MI N+F L F+L+E+
Sbjct: 120 AVPTYLADKGLKTFADIAKFEKELGGKIYGIEPGSGANTQIKAMIAKNQFGLGKFQLVES 179
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRS 232
SE + + R R VF W PHP+N ++ + YL G ++ G A+V+TV
Sbjct: 180 SEAGMLAAVDRAVRRKEAVVFFGWAPHPMNVNVAMTYLTGSDDALGPNEGMATVWTVTAP 239
Query: 233 DYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVT 292
Y ++CPN+ +LL N+ F+ A E+ MM+ +L + +D + L+ HP WL GVT
Sbjct: 240 TYAEQCPNVHKLLTNLTFTAADESRMMQPLL-DHKDALESAKQWLKDHPQDQARWLEGVT 298
Query: 293 TFDGQDPSRQLE 304
TFDG+ + L+
Sbjct: 299 TFDGKPAAANLQ 310
>gi|298290151|ref|YP_003692090.1| choline ABC transporter periplasmic protein [Starkeya novella DSM
506]
gi|296926662|gb|ADH87471.1| choline ABC transporter, periplasmic binding protein [Starkeya
novella DSM 506]
Length = 313
Score = 212 bits (538), Expect = 7e-53, Method: Composition-based stats.
Identities = 115/312 (36%), Positives = 177/312 (56%), Gaps = 6/312 (1%)
Query: 1 MYKILAVCLFLTTFSISYARDADS---CTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M + + L+ F + A A C +R +D GWTDI +T A+ V+L LGY
Sbjct: 1 MNRFVRAACALSLFLSAGAAVAADAPACKTIRMSDPGWTDITSTNAIAGVLL-SGLGYTQ 59
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
++K L+VP+ + S+KN +D+F+G W P+ KF+ E +++++A NL GAK+ LAV
Sbjct: 60 DVKTLSVPIGYESMKNGNLDVFLGNWMPAQRKFMDALNEAKAVEVLATNLTGAKFTLAVP 119
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
+ G+K ++D+ + G++IYGIEPG N I MI+ N F LKG++++E+ E
Sbjct: 120 NYVAEAGVKDFKDLVANADKFGSQIYGIEPGAPANANIQKMIDANDFGLKGWKVVESGEQ 179
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYL 235
A +Q++R VFL+W PHP+N +I YL GG+ FG A V T+ R +
Sbjct: 180 AMLAQVKRSGNGKGWIVFLAWAPHPMNETFDITYLSGGDAYFGPNFGGADVRTLARVGWA 239
Query: 236 DKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFD 295
+CPN + KN+KF + LEN MM IL+ + + L+ HP L+ WL GVTTFD
Sbjct: 240 AQCPNAATFFKNLKFDLPLENAMMGKILDEGLEPAAAAKAWLKAHPAALEPWLAGVTTFD 299
Query: 296 GQDPSRQLERFM 307
G+ ++ +
Sbjct: 300 GKPGLPAVKASL 311
>gi|134284137|ref|ZP_01770830.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 305]
gi|134244455|gb|EBA44560.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 305]
Length = 336
Score = 212 bits (538), Expect = 7e-53, Method: Composition-based stats.
Identities = 106/286 (37%), Positives = 167/286 (58%), Gaps = 3/286 (1%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWY 84
C VR A GWTDI AT A+ V+L+ LGY+ ++ L+VP+T++ LK +D+F+G W
Sbjct: 50 CRDVRMAGPGWTDIEATNALAGVVLKA-LGYRQSVSNLSVPITYQGLKKGQLDVFLGNWM 108
Query: 85 PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYG 144
P+ + P+++ +I ++ NL AK+ LAV D A G+ S+ D+AKY + GAK+YG
Sbjct: 109 PAQAPLVKPFVDARAIDVLHANLSHAKFTLAVPDYVAAAGVHSFADLAKYAQRFGAKVYG 168
Query: 145 IEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPIN 204
IEPG NQ I M+ + ++L+E+SE +Q+ R R VFL WEPH +N
Sbjct: 169 IEPGAPANQNISRMLADKALGPANWQLVESSETGMLTQVERAVRERQWIVFLGWEPHLMN 228
Query: 205 SDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI 262
+ ++ YL GG+ +G A+V TV R+D+ +C N++RL + + F+V LEN M+ +
Sbjct: 229 TKFHLVYLSGGDAYFGPDYGGATVNTVARADFASQCANLTRLFRQMTFTVDLENGMIAAM 288
Query: 263 LNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
L +K+ + LR +P L++ WL GV T G + ++
Sbjct: 289 LQDKRSAVDAAQHALRANPALVEAWLDGVRTASGAPGLPAVRAALD 334
>gi|120555879|ref|YP_960230.1| substrate-binding region of ABC-type glycine betaine transport
system [Marinobacter aquaeolei VT8]
gi|120325728|gb|ABM20043.1| Substrate-binding region of ABC-type glycine betaine transport
system [Marinobacter aquaeolei VT8]
Length = 307
Score = 212 bits (538), Expect = 7e-53, Method: Composition-based stats.
Identities = 112/303 (36%), Positives = 173/303 (57%), Gaps = 4/303 (1%)
Query: 9 LFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTF 68
+ + A A C ++F WTD+ ATTA+ S +L + LGY + +V T+
Sbjct: 1 MLAWVSVGTKAYAAGQCEQIQFGIVDWTDVKATTAVASELL-QALGYNVEMSSQSVADTY 59
Query: 69 RSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSY 128
+ + N ID+F+G W PS+ P +E ++ + NLQGAKY LAV + G+KS+
Sbjct: 60 QGMANGDIDVFLGNWMPSMAPVADPLIEANKVERLGPNLQGAKYTLAVPQAVYEAGVKSF 119
Query: 129 QDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQR 188
DIA++K + +YG+E GN+GNQ ILDMI N F L F L+E SE +Q+ R
Sbjct: 120 SDIARFKDKFDHSVYGLEKGNDGNQLILDMIETNAFGLGEFNLVETSERIMLAQVNGKIR 179
Query: 189 NNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLK 246
+ VFL+W PHP+N +I YL GG+E G A+VYT R+ + + C N+++LL+
Sbjct: 180 DKEWIVFLAWAPHPMNERFDIVYLDGGDEYFGPNKGGATVYTNTRAGFSEYCANVAQLLE 239
Query: 247 NIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDP-SRQLER 305
N++FS+A+E ++M +ILN ++ R + +PD ++ WL GVT DG + + +
Sbjct: 240 NLEFSLAMEGQVMDMILNQFVPQERAARHWMHQNPDAVEVWLEGVTHRDGSPADANAIAQ 299
Query: 306 FMN 308
M
Sbjct: 300 SMK 302
>gi|119384634|ref|YP_915690.1| substrate-binding region of ABC-type glycine betaine transport
system [Paracoccus denitrificans PD1222]
gi|119374401|gb|ABL69994.1| Substrate-binding region of ABC-type glycine betaine transport
system [Paracoccus denitrificans PD1222]
Length = 317
Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats.
Identities = 126/289 (43%), Positives = 185/289 (64%), Gaps = 3/289 (1%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP 65
+ L T I+ A + C V F+D GW+DI+ATTA+ S +L + LGY+T K+L+VP
Sbjct: 13 GLVASLATAGIAAAEEPMECRKVVFSDVGWSDISATTALASTVL-QALGYQTETKILSVP 71
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
VT+ ++ +D+F+G W P++E IAPY E G++++V NL GAKY LA N G LGI
Sbjct: 72 VTYTAMSTDDVDVFLGNWMPTMEADIAPYREAGTVEIVRTNLTGAKYTLATNQAGADLGI 131
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
+ IA++K L KIYGIEPGN+GN+ +LDM+ +NKF L F ++E+SE +Q+ R
Sbjct: 132 DDFGKIAQHKDALAGKIYGIEPGNDGNRLLLDMVADNKFDLGTFEVVESSEQGMLAQVAR 191
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISR 243
P +FL WEPHP+NS + YL GG+E+ FG A V T R+ Y++ CPN+ +
Sbjct: 192 ADAAGKPVIFLGWEPHPMNSQFQMTYLSGGDEVFGPDFGGARVDTNTRAGYVEACPNVGK 251
Query: 244 LLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVT 292
L+N++F++ +ENE+M LILN+ + L+ +PD K W+ GVT
Sbjct: 252 FLQNLEFTLPMENEVMGLILNDGEQPADAALKWLKANPDAAKPWIAGVT 300
>gi|330980396|gb|EGH78499.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. aptata str. DSM 50252]
Length = 314
Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats.
Identities = 113/290 (38%), Positives = 172/290 (59%), Gaps = 5/290 (1%)
Query: 18 YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGID 77
A DA SC VR WTD+ AT+AMT V+L + LGYKT + + F ++++ +D
Sbjct: 23 MAADAASCQNVRMGVVNWTDVIATSAMTQVLL-DGLGYKTKQTSASQQIIFAGIRDQRLD 81
Query: 78 IFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKK 136
+F+GYW P + + I P++E +K++ +L+ A+ LAV G+KS+ DIA+++K
Sbjct: 82 LFLGYWNPLMTQTITPFVEARKVKVLDKPSLEDARATLAVPTYLADKGLKSFADIARFEK 141
Query: 137 ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFL 196
ELG KIYGIEPG+ N +I MI N+F L F+L+E+SE + + R R VF
Sbjct: 142 ELGGKIYGIEPGSGANTQIKAMIAKNQFGLGKFQLVESSEAGMLAAVDRAVRRKEAVVFF 201
Query: 197 SWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVAL 254
W PHP+N ++ + YL G ++ G A+V+TV Y ++CPN+ +LL N+ F+ A
Sbjct: 202 GWTPHPMNVNVAMTYLNGSDDALGPNEGMATVWTVTSPTYAEQCPNVHKLLTNLTFTAAD 261
Query: 255 ENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLE 304
E+ MM+ +L + +D R L+ HP WL GVTTFDG+ + L+
Sbjct: 262 ESRMMQPLL-DHKDALESARQWLKDHPQDQARWLKGVTTFDGKPAAANLQ 310
>gi|159185032|ref|NP_355027.2| ABC transporter, substrate binding protein (glycine betaine)
[Agrobacterium tumefaciens str. C58]
gi|159140306|gb|AAK87812.2| ABC transporter, substrate binding protein (glycine betaine)
[Agrobacterium tumefaciens str. C58]
Length = 308
Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats.
Identities = 118/309 (38%), Positives = 178/309 (57%), Gaps = 5/309 (1%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M + A L L S ++A DAD+C VR A+ GW D+A TT + +L+ L Y+ +
Sbjct: 1 MKVVSAAALVLAGESPAFAADADACKMVRMAEPGWNDLAFTTGIAMTLLKS-LHYQPQSQ 59
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
LL + V + SLK+K +D+FMGYW P++ + PY E+GS++ V NL GAKY AV
Sbjct: 60 LLGIDVIYTSLKSKDLDVFMGYWDPAMVNYYKPYKEDGSVEKVRTNLVGAKYTFAVPTYV 119
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ G+K + D+ K+ + K+YGIEPG NQ +LD + + LK + ++E+SE
Sbjct: 120 WEAGVKDFSDLQKFADKFDRKLYGIEPG--SNQLMLDAVKDPALGLKDWEVVESSEQGML 177
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKC 238
SQ+ R RN VF W PHP+N+ +I YL GG++ FG A+V T VR YL +C
Sbjct: 178 SQVARFNRNKTFIVFQGWAPHPMNAKFDIKYLTGGDKFYGPDFGAATVDTQVRRGYLQEC 237
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN+++LL+N++F V EN+ M LI+N + ++ P L+ WL V DGQ+
Sbjct: 238 PNVAKLLQNLEFDVEFENKGMDLIMNGGLSPEDAAAQAIKAEPHRLETWLKDVFALDGQN 297
Query: 299 PSRQLERFM 307
++ +
Sbjct: 298 GLATVKAAL 306
>gi|70733047|ref|YP_262820.1| glycine betaine/L-proline ABC transporter periplasmic
substrate-binding protein [Pseudomonas fluorescens Pf-5]
gi|68347346|gb|AAY94952.1| glycine betaine/L-proline ABC transporter, periplasmic
substrate-binding protein [Pseudomonas fluorescens Pf-5]
Length = 318
Score = 211 bits (536), Expect = 1e-52, Method: Composition-based stats.
Identities = 122/294 (41%), Positives = 185/294 (62%), Gaps = 6/294 (2%)
Query: 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNK-GID 77
A + C+ V F+D GWTDI TTA TSV+L LGYKT +++VPVT++SL + +D
Sbjct: 21 AAEPAQCSTVNFSDVGWTDITVTTATTSVVL-NALGYKTKTTMISVPVTYKSLADGKNMD 79
Query: 78 IFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKE 137
+F+G W P++E I PY + G++ + NL+ AKY LAV + + G+K + DI K+KKE
Sbjct: 80 VFLGNWMPTMENDIKPYRDAGTVATLRANLENAKYTLAVPESLYDKGLKDFADIVKFKKE 139
Query: 138 LGAKIYGIEPGNEGNQRILDMIN--NNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
L KIYGIEPGN+GN+ I MI+ GF+++E+SE SQ+ R QR + VF
Sbjct: 140 LDGKIYGIEPGNDGNRTIQTMIDKNAFGLKDAGFKVVESSEAGMLSQVERAQRRDTAVVF 199
Query: 196 LSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVA 253
L WEPHP+N+ + YL GG+E FG+A++YT R Y ++C N+ +LLKN+ F++
Sbjct: 200 LGWEPHPMNTRFKMKYLTGGDEFFGPNFGQATIYTNTRKGYAEECSNVGQLLKNLSFTLN 259
Query: 254 LENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+E+ +M +L++K + + L+ +P +L WL GVTT DG+ ++ +
Sbjct: 260 MESTLMGNVLDDKMKPEAAAKAWLKQNPQVLDTWLAGVTTIDGKPGLEAVKAKL 313
>gi|186472304|ref|YP_001859646.1| choline ABC transporter, periplasmic binding protein [Burkholderia
phymatum STM815]
gi|184194636|gb|ACC72600.1| choline ABC transporter, periplasmic binding protein [Burkholderia
phymatum STM815]
Length = 313
Score = 211 bits (536), Expect = 1e-52, Method: Composition-based stats.
Identities = 128/286 (44%), Positives = 185/286 (64%), Gaps = 5/286 (1%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWY 84
C VRFAD GWTDIAATT + S I + LGY + +VP+TF +K+K ID+F+GYW
Sbjct: 27 CRNVRFADVGWTDIAATTGLASTIF-QGLGYSPTKTIASVPITFAGIKSKQIDVFLGYWA 85
Query: 85 PSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIY 143
P+++ I P+++ G+IK++A NL GAKY LAV D + G+K++ DIAKY +L KIY
Sbjct: 86 PTMDPIIQPFVKAGTIKVLATPNLTGAKYTLAVPDYVYNGGLKNFSDIAKYADKLDGKIY 145
Query: 144 GIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPI 203
GIEPGN+GN I MI+ N+F L F+L+E+SE ++ R R+ VFL WEPHP+
Sbjct: 146 GIEPGNDGNALIKKMIDGNQFGLGKFKLVESSEAGMLVEVNRAVRDKKWIVFLGWEPHPM 205
Query: 204 NSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKL 261
N + I YL GG+++ +GEA V+T DY +CPN ++L+ N++F+ A+EN +M
Sbjct: 206 NVQMKIDYLAGGDDVFGPNYGEAKVFTATPPDYAARCPNAAKLVSNLQFTTAIENHVMVP 265
Query: 262 ILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
I+ NK+D L+ +P L WL GV TFDG+D ++ ++
Sbjct: 266 IM-NKEDANKAALAWLKANPQALDKWLAGVQTFDGKDGLPAVKAYI 310
>gi|114762784|ref|ZP_01442218.1| ABC glycine betaine/L-proline transporter, periplasmic
substrate-binding subunit [Pelagibaca bermudensis
HTCC2601]
gi|114544694|gb|EAU47700.1| ABC glycine betaine/L-proline transporter, periplasmic
substrate-binding subunit [Roseovarius sp. HTCC2601]
Length = 306
Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats.
Identities = 119/284 (41%), Positives = 176/284 (61%), Gaps = 2/284 (0%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYW 83
C V +D GWTDI TTA +LE LGY+ ++K+L+VPVTF SL++ +D+F+G W
Sbjct: 23 DCDAVSMSDVGWTDITTTTAAAKHVLE-GLGYEVDVKVLSVPVTFASLESDDVDVFLGNW 81
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIY 143
P+ I PYL+ G I+ + NL+G KY LA + G++SY DIAK+ EL KIY
Sbjct: 82 MPAQSGAIQPYLDSGEIEQINVNLEGTKYTLATPTYAYEAGLQSYADIAKFADELDEKIY 141
Query: 144 GIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPI 203
GIEPGNEGN ++ + +KF L F ++E+SE +Q+ R ++ P VFL WEPHP+
Sbjct: 142 GIEPGNEGNAYLVSLTEEDKFGLGEFDVVESSEQGMLAQVARYYKDEEPVVFLGWEPHPM 201
Query: 204 NSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLIL 263
N++ ++ YLPGGE+ G E V+TV R+ + ++CPN+ L N+ F++ +EN +M IL
Sbjct: 202 NANFDLKYLPGGEDFFGG-EGVVHTVTRAGFSEECPNLGTLFSNMDFTLDMENMIMGQIL 260
Query: 264 NNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
++ D L+ + D+L WL GVTT DG D ++ +
Sbjct: 261 DDGADPADATEAWLKDNVDVLDTWLDGVTTVDGGDAVAAVKGHL 304
>gi|229592054|ref|YP_002874173.1| putative glycine betaine/L-proline-binding protein ABC transporter
component [Pseudomonas fluorescens SBW25]
gi|229363920|emb|CAY51431.1| putative glycine betaine/L-proline-binding protein ABC transporter
component [Pseudomonas fluorescens SBW25]
Length = 311
Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats.
Identities = 110/306 (35%), Positives = 176/306 (57%), Gaps = 5/306 (1%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
YK + + + A++ SC ++ A+ GW D +T A+T V+ E LGYK + +
Sbjct: 5 YKTVIALTLASQSVLVIAQEPSSCQVIKTANVGWLDGISTNALTQVVAE-GLGYKFDDSM 63
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
L++P+ +SL + +D F+ YW PS + I P + S+ L A NL GAKY LAV
Sbjct: 64 LSLPIVLKSLSDGKLDTFINYWSPSQDPLITPLKDALSV-LPAPNLTGAKYTLAVPKFLA 122
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
G+K ++DI K+K +LG +IYGI+PG+ GN + +I +N + LK F+L+E+ E
Sbjct: 123 DEGLKDFKDIEKFKVQLGGRIYGIQPGSGGNTLVQKIIKDNSYGLKDFKLVESGEAGMIQ 182
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCP 239
++ R + P VFL+W PHP+N +++I YL GG++ FG A+V T+ Y ++C
Sbjct: 183 EVGRSIQRKKPIVFLAWAPHPMNVNMDIVYLTGGDDSFGPDFGAATVKTITSKGYAERCG 242
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDP 299
N+ +L N+KF+V +E+ +M + K+ + L HP+ L +WL GVTT DG+D
Sbjct: 243 NVGKLYSNLKFTVDMESSIMNALD-KKEPALSAAKKWLAAHPETLDSWLAGVTTVDGKDA 301
Query: 300 SRQLER 305
+
Sbjct: 302 KAAVLA 307
>gi|330950432|gb|EGH50692.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae Cit 7]
Length = 314
Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats.
Identities = 113/290 (38%), Positives = 172/290 (59%), Gaps = 5/290 (1%)
Query: 18 YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGID 77
A DA SC VR WTD+ AT+AMT V+L + LGYKT + + F ++++ +D
Sbjct: 23 MAADAASCQNVRMGVVNWTDVIATSAMTQVLL-DGLGYKTKQTSASQQIIFAGIRDQRLD 81
Query: 78 IFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKK 136
+F+GYW P + + I P++E +K++ +L+ A+ LAV G+K++ DIA+++K
Sbjct: 82 LFLGYWNPLMTQTITPFVEARKVKVLDKTSLEDARATLAVPTYLADKGLKTFADIARFEK 141
Query: 137 ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFL 196
ELG KIYGIEPG+ N +I MI N+F L F+L+E+SE + + R R VF
Sbjct: 142 ELGGKIYGIEPGSGANTQIKAMIAKNQFGLGKFQLVESSEAGMLAAVDRAVRRKEAVVFF 201
Query: 197 SWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVAL 254
W PHP+N ++ + YL G ++ G A+V+TV Y ++CPN+ RLL N+ F+ A
Sbjct: 202 GWTPHPMNVNVAMTYLNGSDDALGPNEGMATVWTVTSPTYAEQCPNVHRLLTNLTFTAAD 261
Query: 255 ENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLE 304
E+ MM+ +L + +D R L+ HP WL GVTTFDG+ + L+
Sbjct: 262 ESRMMQPLL-DHKDALESARQWLKDHPQDQARWLEGVTTFDGKPAAANLQ 310
>gi|302391228|ref|YP_003827048.1| glycine/betaine ABC transporter substrate-binding protein
[Acetohalobium arabaticum DSM 5501]
gi|302203305|gb|ADL11983.1| Substrate-binding region of ABC-type glycine betaine transport
system [Acetohalobium arabaticum DSM 5501]
Length = 317
Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats.
Identities = 85/311 (27%), Positives = 157/311 (50%), Gaps = 8/311 (2%)
Query: 4 ILAVCLFLTTFSISYARD------ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
ILAVCL LT + + A+ ++F W + T + +LE +GYK
Sbjct: 9 ILAVCLVLTLTVVGCTQQKQASNQAEQTEEIKFGYVNWPGVTVKTEVVKQVLET-IGYKV 67
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+ L V F+ + N ID F+G W P++ PY E+G+I + N++ A Y LAV
Sbjct: 68 TTESLGQQVLFKGMDNDEIDAFLGNWMPTMMTNFKPYKEKGTIVNIKPNVEKAVYKLAVP 127
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
+ + G+KS D+ K+ + +I G+E GN+GN+ + + I NN ++L+ ++++ +S
Sbjct: 128 EYVWEAGVKSISDLHKHADKFDHEIVGLEAGNDGNEIMKEAIENNTYNLEDWKVVASSTG 187
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDK 237
S + R + F WEPH +N +I YL E I G +++YT R + ++
Sbjct: 188 GMLSAVERATKTGEWIAFPGWEPHWMNVKYDIKYLEDPENIWGE-SSTIYTAARPELEEE 246
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQ 297
PN + L+N + + ++++ + ++ + ++ + D++ +WL GV T DG+
Sbjct: 247 SPNFYKFLENFEITSQIQSKWILEYQKKERPAEEAAEEWIKNNIDVISSWLDGVKTVDGK 306
Query: 298 DPSRQLERFMN 308
D + ++
Sbjct: 307 DAVKVIKNKFK 317
>gi|289672892|ref|ZP_06493782.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. syringae FF5]
Length = 314
Score = 209 bits (532), Expect = 4e-52, Method: Composition-based stats.
Identities = 111/290 (38%), Positives = 169/290 (58%), Gaps = 5/290 (1%)
Query: 18 YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGID 77
A DA SC VR WTD+ AT+AMT +L + LGYKT + + F ++++ +D
Sbjct: 23 MAADAASCQNVRMGVVNWTDVIATSAMTQALL-DGLGYKTKQTSASQQIIFAGIRDQRLD 81
Query: 78 IFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKK 136
+F+GYW P + + I P++E +K++ +L+ A+ LAV G+KS+ DIA+++K
Sbjct: 82 LFLGYWNPLMTQTITPFVEARKVKVLDKPSLEDARATLAVPTYLADKGLKSFADIARFEK 141
Query: 137 ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFL 196
ELG KIYGIEPG+ N +I MI N+F L F+L+E+SE + + R R VF
Sbjct: 142 ELGGKIYGIEPGSGANTQIKAMIAKNQFGLGKFQLVESSEAGMLAAVDRAVRRKEAVVFF 201
Query: 197 SWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVAL 254
W PHP+N ++ + YL G + G A+V+ V Y ++CPN+ +LL N+ F+ A
Sbjct: 202 GWTPHPMNVNVAMTYLNGSDGALGPNEGMATVWKVTSPTYAEQCPNVHKLLTNLTFTAAD 261
Query: 255 ENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLE 304
E+ MM+ +L + +D R L+ HP WL GVTTFDG+ + L+
Sbjct: 262 ESRMMQPLL-DHKDALESARQWLKDHPQDQARWLEGVTTFDGKPAAANLQ 310
>gi|256830587|ref|YP_003159315.1| glycine betaine ABC transporter substrate-binding protein
[Desulfomicrobium baculatum DSM 4028]
gi|256579763|gb|ACU90899.1| Substrate-binding region of ABC-type glycine betaine transport
system [Desulfomicrobium baculatum DSM 4028]
Length = 317
Score = 208 bits (530), Expect = 6e-52, Method: Composition-based stats.
Identities = 101/313 (32%), Positives = 161/313 (51%), Gaps = 7/313 (2%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+ K + V + L I+ A+ S VR GWTD+ T+ + IL + LGY ++
Sbjct: 6 LKKTIPVLVLLLALFIAPAQ--ASRDDVRITSVGWTDVTVTSELAVAIL-QSLGYSSSNM 62
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ ++P+ +++L D+F+G W PS+E P+ + G++ + N+ GAKY LAV
Sbjct: 63 MTSLPICYQALATNEADVFLGNWMPSMESVARPHFDSGNVIQLVPNMTGAKYTLAVPSYV 122
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
A G+K ++DIAKY +L KIYGIE GN+GN I MI+ N F L F L+ +SE
Sbjct: 123 AAGGLKDFKDIAKYGDKLEWKIYGIEEGNDGNDIIESMIDKNMFGLGKFELVASSESGML 182
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE---ASVYTVVRSDYLDK 237
+Q++ R VFL W PH +N +++ YL G + + A+VYT VR
Sbjct: 183 AQVQSFMREKKWIVFLGWSPHSMNEKIDMTYLTGSTDDTFGPNDGTATVYTNVRKGLPQD 242
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNN-KQDRQFVGRTMLRTHPDLLKNWLIGVTTFDG 296
PN++R L+N V + N +M + + + + HPD+ WL VTT +G
Sbjct: 243 MPNVTRFLQNYVVPVTMMNSIMVTMHEKPEMKARDAALDWVTAHPDMAATWLESVTTKEG 302
Query: 297 QDPSRQLERFMNN 309
+ + + +
Sbjct: 303 KPGLPAFLKLLES 315
>gi|302391977|ref|YP_003827797.1| glycine/betaine ABC transporter substrate-binding protein
[Acetohalobium arabaticum DSM 5501]
gi|302204054|gb|ADL12732.1| Substrate-binding region of ABC-type glycine betaine transport
system [Acetohalobium arabaticum DSM 5501]
Length = 309
Score = 208 bits (529), Expect = 9e-52, Method: Composition-based stats.
Identities = 79/312 (25%), Positives = 147/312 (47%), Gaps = 6/312 (1%)
Query: 1 MYKI---LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M K+ L + + L T + ++ P+ F + W I A+ ILE +GY+
Sbjct: 1 MKKLVVNLIILMMLVTIFAAPVAASNPEEPIVFGEADWPGIWGKDAVVEHILE-NIGYEV 59
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
IK + + + + +K ID+F+G W PS + + I V NL Y L V
Sbjct: 60 EIKTVKNVIIYNRMVDKEIDVFLGSWMPSDKPTRDELKGQFKI--VKTNLDEGLYTLGVP 117
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
+ G++S+ D+ KY ++ KIY G + + + I N+ + L ++L+ +S+
Sbjct: 118 KYVWEAGVRSFTDLDKYAEKFDHKIYAGPIGWKFTKAMKKAIKNDIYGLGDWKLVNSSQT 177
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDK 237
A + ++R + L+W+PH +N ++I YL + I E+ V T+ R +
Sbjct: 178 AMIANMKRAVKKGDWIATLAWKPHWMNYVMDIKYLKDPKNIWVNAESWVDTITRVGFKQD 237
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQ 297
P + + L K + + NE + I Q+ + V + ++ + D++K+WL GV +G+
Sbjct: 238 RPQVHKFLTQFKTTTDMSNEWIYYIGYKDQEPERVAQRWVKNNLDVVKDWLKGVKAKNGK 297
Query: 298 DPSRQLERFMNN 309
L+ +NN
Sbjct: 298 QAFEVLKNKVNN 309
>gi|126735116|ref|ZP_01750862.1| Substrate-binding region of ABC-type glycine betaine transport
system [Roseobacter sp. CCS2]
gi|126715671|gb|EBA12536.1| Substrate-binding region of ABC-type glycine betaine transport
system [Roseobacter sp. CCS2]
Length = 307
Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats.
Identities = 134/301 (44%), Positives = 185/301 (61%), Gaps = 8/301 (2%)
Query: 1 MY-KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M K L + ++A C VRF+D GWTDI ATTA TS++LE LGY+T
Sbjct: 1 MKLKSTLSVLAVCAAVPAFA----DCDLVRFSDVGWTDITATTATTSIVLEA-LGYETTT 55
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+L+VP+T+ S+ ID+F+G W P++E IA Y E G++ V NL+GAKY LA N
Sbjct: 56 DILSVPITYASMAQGDIDVFLGNWMPTMEGDIASYREAGTVDTVRTNLEGAKYTLATNAA 115
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
G A GI + IA L KIYGIE GN+GN+ I DMI+ + F L GF ++E+SE
Sbjct: 116 GVAAGITDFASIATAMDALDGKIYGIEAGNDGNRLIQDMIDADAFGLNGFEVVESSEQGM 175
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF--GEASVYTVVRSDYLDK 237
+Q+ R + VFL WEPHP+N++ ++ YLPGG++ G G A+V T R+ Y+D+
Sbjct: 176 LAQVERSDDRDEAIVFLGWEPHPMNANFDMTYLPGGDDYFGPDLGGATVATNTRAGYVDE 235
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQ 297
CPN +LL+N++FS+A+ENE+M ILN+ D + L +PD WL GVTT DG
Sbjct: 236 CPNTGKLLQNLEFSLAMENEIMGAILNDDMDPDDAAKAWLAANPDAWAAWLDGVTTKDGG 295
Query: 298 D 298
D
Sbjct: 296 D 296
>gi|258404266|ref|YP_003197008.1| Substrate-binding region of ABC-type glycine betaine transport
system [Desulfohalobium retbaense DSM 5692]
gi|257796493|gb|ACV67430.1| Substrate-binding region of ABC-type glycine betaine transport
system [Desulfohalobium retbaense DSM 5692]
Length = 317
Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats.
Identities = 103/310 (33%), Positives = 172/310 (55%), Gaps = 6/310 (1%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
K+L + ++S A + VRFA WT + T + IL LGY+ + +
Sbjct: 6 KKVLVALIAFAVLTMS-ASQVLAAKEVRFASVSWTGVTTKTELAVRIL-RSLGYEASNTM 63
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
++VP+ F++L DIF+G W P+ Y ++G+I+ + ++ GAKY LAV +
Sbjct: 64 VSVPIAFKALDTGEADIFLGNWMPTQATMANKYFDKGTIEPLVASMPGAKYTLAVPTYAY 123
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
G++ ++DIAKY +LG KIYGIE GN+GNQ I MI+ + F L F+LI +SE S
Sbjct: 124 EGGLQHFKDIAKYADKLGNKIYGIEEGNDGNQIIQSMIDKDMFGLGDFQLIPSSEAGMLS 183
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISG---FGEASVYTVVRSDYLDKC 238
Q++ ++ VFL W PH +N +++ YL G + G A+VYT+VR ++++
Sbjct: 184 QVQSFTKDERWIVFLGWAPHHMNEMIDMKYLDGSTSETFGKNDGTATVYTIVRDGFVEEN 243
Query: 239 PNISRLLKNIKFSVALENEMMKLI-LNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQ 297
N+++ LKN+ F +++ N++M + + G ++ HP++ K WL GVTT G+
Sbjct: 244 KNVAKFLKNLIFPISMMNQIMTTLHEKDGLKPVDAGLDWVKAHPEVYKGWLEGVTTISGE 303
Query: 298 DPSRQLERFM 307
E+++
Sbjct: 304 PALPAFEQYL 313
>gi|313890394|ref|ZP_07824025.1| ABC transporter, substrate-binding protein, QAT family
[Streptococcus pseudoporcinus SPIN 20026]
gi|313121237|gb|EFR44345.1| ABC transporter, substrate-binding protein, QAT family
[Streptococcus pseudoporcinus SPIN 20026]
Length = 575
Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats.
Identities = 53/286 (18%), Positives = 110/286 (38%), Gaps = 10/286 (3%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
+ TF + + V+ A W A+T + + +L++ GY+ + L
Sbjct: 300 LFISAALGQTFVNMSSGSGEKGEKVKIAYMQWDSEIASTNVIAEVLKQE-GYRVEMTPLD 358
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
V ++++ N D + W P + + + + NL+G K L V
Sbjct: 359 NAVMWQTVANGNADFTVSPWLPVTQAEHMKKY-KNQVDNLGPNLKGTKLGLVVPKYM--- 414
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
K+ I + KI GIEPG + +L + L+ +S A + +
Sbjct: 415 --KNVNSIEDLSDQAKKKITGIEPGAGITTATQKTLKAYP-NLSDWELVLSSTGAMTTSL 471
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
+ +N V W PH + S ++ YL + + E ++ ++ R P + +
Sbjct: 472 DQAIKNKEEIVVTGWSPHWMFSKYDLKYLKDP-KKTLGSEENINSIARKGLKKDMPKLYK 530
Query: 244 LLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
++ ++ A +M + NN + + ++ + D +K W+
Sbjct: 531 IVDKFYWTTADMESVMLDM-NNGMKPEDAAKKWVKANQDKVKKWIN 575
>gi|325518050|gb|EGC97852.1| putative glycine betaine transporter substrate binding protein
[Burkholderia sp. TJI49]
Length = 311
Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats.
Identities = 110/282 (39%), Positives = 168/282 (59%), Gaps = 3/282 (1%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFM 80
+ +C VR A GWTDI AT AM V+L+ LGY+ +I L+VP+T++ +K +D+F+
Sbjct: 31 EPQTCRDVRMAAPGWTDIDATNAMAGVVLKA-LGYRQDIANLSVPITYQGMKKGQVDVFL 89
Query: 81 GYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGA 140
G W P+ + P+++E SI ++ NL GAK+ LAV D A G+ S+ D+A+Y G
Sbjct: 90 GNWMPAQGPLVKPFVDEKSIDVLHANLSGAKFTLAVPDYVAAAGVHSFADLARYADRFGG 149
Query: 141 KIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEP 200
KIYGIEPG NQ I M++++ + L+E+SE +Q+ R R+ VFL+WEP
Sbjct: 150 KIYGIEPGAPANQNIKRMLSDHALGTANWSLVESSETGMLTQVERAVRDKRWIVFLAWEP 209
Query: 201 HPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEM 258
H +N+ ++ YL GG+ +G A+V TV R+ + D+C N++RL + + FSV +EN M
Sbjct: 210 HLMNTKFHLTYLSGGDAYFGPNYGGATVNTVTRAGFADQCTNLARLFRQMTFSVDVENRM 269
Query: 259 MKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPS 300
+ +L+NK + L+ P L+ WL GVTT G
Sbjct: 270 IADMLDNKTSPALAAQHALKADPALVAGWLDGVTTSAGAPGL 311
>gi|332522360|ref|ZP_08398612.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Streptococcus porcinus str.
Jelinkova 176]
gi|332313624|gb|EGJ26609.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Streptococcus porcinus str.
Jelinkova 176]
Length = 575
Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats.
Identities = 52/286 (18%), Positives = 110/286 (38%), Gaps = 10/286 (3%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
+ T + + V+ A W A+T + + +L++ GY+ + L
Sbjct: 300 FFIIAALGQTIVSMSSGSGEKGEKVKIAYMQWDSEIASTNVIAEVLKQE-GYRVEMTPLD 358
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
V ++++ N D + W P + + + + NL+G K L V
Sbjct: 359 NAVMWQTVANGNADFTVSPWLPVTQAEHMKKY-KNQVDNLGPNLKGTKLGLVVPKYM--- 414
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
K+ I + KI GIEPG + +L + L+ +S A + +
Sbjct: 415 --KNVNSIEDLSDQAKKKITGIEPGAGITTATQKTLKAYP-NLADWELVLSSTGAMTTSL 471
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
+ +N V W PH + S ++ YL + + E ++ ++ R P + +
Sbjct: 472 DQAIKNKEEIVVTGWSPHWMFSKYDLKYLKDP-KKTLGSEENINSIARKGLKKDMPKLYK 530
Query: 244 LLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
++ +++A +M + NN + + ++ + D +K W+
Sbjct: 531 IVDKFHWTIADMESVMLDM-NNGMKPEDAAKKWVKANQDKVKKWIN 575
>gi|206562272|ref|YP_002233035.1| putative glycine betaine transporter [Burkholderia cenocepacia
J2315]
gi|198038312|emb|CAR54267.1| putative ABC-type glycine betaine transport protein [Burkholderia
cenocepacia J2315]
Length = 314
Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats.
Identities = 114/293 (38%), Positives = 174/293 (59%), Gaps = 5/293 (1%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKG 75
++A + D C V D GW+DIAATT + ++L + LGY+ + + P+ +K
Sbjct: 20 PAHASEGDVCRKVTLGDVGWSDIAATTGVAMMLL-DGLGYEATKTIASPPIVLAGVKKAQ 78
Query: 76 IDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAVNDVGFALGIKSYQDIAKY 134
ID F+GYW PS+ + P+++ G++ L+ NL GA+Y LAV G+K + DIA++
Sbjct: 79 IDAFLGYWDPSMTPTVKPFVDAGAVHLLPQPNLVGARYTLAVPQYASDKGLKRFADIARF 138
Query: 135 KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAV 194
+ +L KIYGI GN GN I MI+ N+F L GF+L+E+SE Q+ R + + V
Sbjct: 139 RDQLDGKIYGIGAGNNGNALIQRMIDKNEFGLGGFKLVESSEAGMLVQVTRAVQEHRMIV 198
Query: 195 FLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSV 252
FL+WEPHP+N I YL GG+ + +G A VYT+V YL++CPN+ RLL N+ F+
Sbjct: 199 FLAWEPHPMNLQYKIAYLDGGDTVFGPNYGSAKVYTLVSPGYLERCPNVGRLLTNLTFTT 258
Query: 253 ALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLER 305
EN++M I+ N D V + + +P +L WL GVTT DG++ +++
Sbjct: 259 DEENQLMVPIM-NHADPIAVAKEWAKKNPGVLSKWLDGVTTIDGKNAKDAIDK 310
>gi|89053988|ref|YP_509439.1| substrate-binding region of ABC-type glycine betaine transport
system [Jannaschia sp. CCS1]
gi|88863537|gb|ABD54414.1| Substrate-binding region of ABC-type glycine betaine transport
system [Jannaschia sp. CCS1]
Length = 314
Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats.
Identities = 135/305 (44%), Positives = 185/305 (60%), Gaps = 3/305 (0%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
+ T + A C V F+D GWTDI ATTA TSV+LE LGY+T I +L+V
Sbjct: 9 TSALALTLTAGAAMADAHADCGTVTFSDVGWTDITATTAATSVVLEA-LGYETEILVLSV 67
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
PVT+ SL +DIF+G W P++E IAPY E G++ V NL+GAKY LA N G ALG
Sbjct: 68 PVTYTSLAEGDVDIFLGNWMPTMEADIAPYREAGTVDTVRANLEGAKYTLATNAAGAALG 127
Query: 125 IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
I + I EL +IYGIEPGN+GN+ I+DMI + F L F ++E+SE +Q+
Sbjct: 128 ITDFASIVAAMDELDGEIYGIEPGNDGNRLIMDMIEADAFGLSEFEVVESSEQGMLAQVA 187
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF--GEASVYTVVRSDYLDKCPNIS 242
R + P VFL WEPHP+N++ ++ YL GG++ G G A+V+T + Y D CPN+
Sbjct: 188 RASDRDEPVVFLGWEPHPMNANFDLTYLEGGDDWFGPNLGGATVFTNTSAGYADACPNVG 247
Query: 243 RLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQ 302
LL N++FS+A+ENE+M IL+ +D + +PD + WL GVTTFDG D S
Sbjct: 248 ALLNNLEFSLAMENEIMGAILDEGEDPADAATAWMAANPDAVMAWLDGVTTFDGGDASAA 307
Query: 303 LERFM 307
+ +
Sbjct: 308 VSEAL 312
>gi|146305525|ref|YP_001185990.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas mendocina ymp]
gi|145573726|gb|ABP83258.1| Substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas mendocina ymp]
Length = 314
Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats.
Identities = 112/304 (36%), Positives = 179/304 (58%), Gaps = 3/304 (0%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP 65
+ L + + A +++ C VR +D GWTDI TT + +++ +GY+T ++ L +P
Sbjct: 8 LLASTLASCATLQAAESERCELVRLSDVGWTDITMTTTVARLVM-SEIGYRTQVRRLTLP 66
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
T+R L +D+F+G W P+ + + P L+ G I+ + NL +Y LAV G+ G+
Sbjct: 67 DTYRGLSEGHLDVFLGNWMPAQAELVQPLLDSGRIEKLNTNLPTVRYTLAVLTPGYEAGL 126
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
K + DI +YK ELG +I+GIEPGNEGN+ + MI +N F L GF L+E SE + + R
Sbjct: 127 KDFADIQRYKNELGGQIFGIEPGNEGNEMLKGMIRDNTFGLGGFSLVETSESGMLNHVER 186
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISR 243
QR AVFL WEPHP+N L ++YL GG++ +G A V TV R ++ +CPN++R
Sbjct: 187 AQRLGKWAVFLGWEPHPMNERLKMNYLSGGDDYFGPNYGAAQVNTVARGNFSQQCPNLAR 246
Query: 244 LLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQL 303
L +N+ F++ EN++M +L +R+ V + + +P ++ WL GVT + G R
Sbjct: 247 LFRNMTFTITAENQLMSAVLEGNTNRRRVAKRWIEDNPQMIAAWLKGVTRYQGGPIDRAF 306
Query: 304 ERFM 307
+ +
Sbjct: 307 DMPL 310
>gi|121610887|ref|YP_998694.1| glycine betaine ABC transporter substrate-binding protein
[Verminephrobacter eiseniae EF01-2]
gi|121555527|gb|ABM59676.1| Substrate-binding region of ABC-type glycine betaine transport
system [Verminephrobacter eiseniae EF01-2]
Length = 316
Score = 206 bits (523), Expect = 4e-51, Method: Composition-based stats.
Identities = 128/314 (40%), Positives = 187/314 (59%), Gaps = 9/314 (2%)
Query: 1 MYKILA---VCLFLTTFSISYAR-DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
+ K A L + S S+A + SC +RFAD GWTDI + TA+ SV+ E LGYK
Sbjct: 3 LKKFAAFGCAALLVAWSSPSFAEPEPASCRNLRFADNGWTDITSVTALASVVFEA-LGYK 61
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLV-AENLQGAKYMLA 115
+ + +VP++F LKNK +D+ +GYW+P + + P L+ SI ++ NL GAK LA
Sbjct: 62 PSTTMASVPISFAGLKNKQLDVSLGYWWPLQQLQVQPLLDSKSINMIEPPNLSGAKATLA 121
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
V +A G+KS+ DIA+Y+KEL KIYGIE G+ N +I MI+ N L GF+L+E+S
Sbjct: 122 VPGYAWAAGLKSFDDIARYRKELDGKIYGIESGSSANAKIQKMIDQNLHGLGGFKLVESS 181
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSD 233
E + R RN VF WEPHP+N +I+YL GG+ +GEA VYT+ +D
Sbjct: 182 EAGMLVTLERAIRNQKWLVFWGWEPHPMNIQFSINYLSGGDATFGPNYGEARVYTLTATD 241
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
+L++CPN +L+ ++FS LEN++M+ ++ NK R L+ +P +L WL V T
Sbjct: 242 FLERCPNAGKLVTQLRFSTQLENQLMQAVM-NKTRPAEAARAYLKQNPQVLDPWLADVKT 300
Query: 294 FDGQDPSRQLERFM 307
FDG+D + +
Sbjct: 301 FDGKDGLAAAKAQL 314
>gi|258406391|ref|YP_003199133.1| Substrate-binding region of ABC-type glycine betaine transport
system [Desulfohalobium retbaense DSM 5692]
gi|257798618|gb|ACV69555.1| Substrate-binding region of ABC-type glycine betaine transport
system [Desulfohalobium retbaense DSM 5692]
Length = 281
Score = 205 bits (522), Expect = 6e-51, Method: Composition-based stats.
Identities = 57/288 (19%), Positives = 117/288 (40%), Gaps = 8/288 (2%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K+ + L L+ F ++ A + V A W+ A+T + +L+E +GY+ I
Sbjct: 1 MRKLTLIALVLSAFILAGVSTAMAKDTVELAYVEWSSEVASTNVVQAVLQEKMGYECEIT 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
++ +++ +D + W P+ +++ + + NL+G + L V +
Sbjct: 61 PVSGAAMWQATATGDVDGLVAAWLPTTHGHYLEKVKD-EVVDLGPNLEGTRIGLVVPEYV 119
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
I S I +Y ++ +I GI+PG + + L+E S
Sbjct: 120 S---IDSIDQINEYAEKFDEQIIGIDPGAGIMSATEEAVEEYNMD--NIELMEGSGATMT 174
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ ++ + V W PH + ++ YL + + G GE + T+VR + P
Sbjct: 175 AVLKNRIEDKEWVVVTGWTPHWKFAKWDLKYLNDPKGVYG-GEEFISTIVRQGLKEDMPE 233
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+ L N ++ E+M + D + + +P+ ++ WL
Sbjct: 234 VYEFLDNFYWAPEDMAEVMVW-NQDGMDPYESAKKWISENPEKVEKWL 280
>gi|302392993|ref|YP_003828813.1| glycine/betaine ABC transporter substrate-binding protein
[Acetohalobium arabaticum DSM 5501]
gi|302205070|gb|ADL13748.1| Substrate-binding region of ABC-type glycine betaine transport
system [Acetohalobium arabaticum DSM 5501]
Length = 310
Score = 205 bits (521), Expect = 7e-51, Method: Composition-based stats.
Identities = 74/304 (24%), Positives = 145/304 (47%), Gaps = 3/304 (0%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
+ + + +S A+S + + W I A A+ +LE +GY + A
Sbjct: 8 VFLLVVISAASLVSGQALAESNDMIILGEADWPGIRAKNAVAVHVLET-IGYSVETQTGA 66
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
P+ ++ L ID ++G W PS+E + I +VA N+ Y +AV + +
Sbjct: 67 DPIMYQGLAQGDIDAYLGSWMPSMENTRKEL--KDKINVVATNMDEGIYTMAVPEYVWEA 124
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
G++SY D+ K+ + K+Y G ++ + + + + L ++ + +S+ A +Q+
Sbjct: 125 GVRSYADLDKHADKFNHKMYVGPAGWASSKTMAKAVKKDIYGLGDWQAVNSSQSAMMAQV 184
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
+R R VF+ W+PH +N L+I YL + + E+ V T+ R+ + + P +++
Sbjct: 185 KRSVRREEWIVFIGWQPHWMNYILDIKYLKDPKGLWVSPESWVDTITRTGFKEDHPEVNK 244
Query: 244 LLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQL 303
LK K V ++ + + N +D + V R + + D++K WL GV +G+ + L
Sbjct: 245 FLKQFKVDVEANDKWIYEVGKNSRDSKEVAREWITENMDVVKGWLEGVKAQNGKKAAEVL 304
Query: 304 ERFM 307
E +
Sbjct: 305 EEKL 308
>gi|330501440|ref|YP_004378309.1| glycine betaine ABC transporter substrate-binding protein
[Pseudomonas mendocina NK-01]
gi|328915726|gb|AEB56557.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas mendocina NK-01]
Length = 298
Score = 205 bits (521), Expect = 7e-51, Method: Composition-based stats.
Identities = 111/298 (37%), Positives = 178/298 (59%), Gaps = 5/298 (1%)
Query: 1 MYKILAVCLFLTTF--SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K+ L + F + A +A+ C + AD GWTDI TTA+ ++L + LGY+T
Sbjct: 1 MNKLAHWLLAVGLFYGATLQAAEAERCELITLADVGWTDITMTTAVARLVLTD-LGYRTQ 59
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+K L++P T+++L + +D+F+G W P+ + + P+L+ G I + NL +Y LAV
Sbjct: 60 VKRLSLPETYQALADGNVDVFLGNWMPAQSQLLEPHLQSGRIDKLQTNLPTVRYTLAVLQ 119
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
G+K + DI ++K EL +I+GIEPGNEGN+ + MI N F L+ F L+E+SE
Sbjct: 120 PAHEAGLKDFADIHRFKDELRGQIFGIEPGNEGNEMVKTMIRENVFGLRDFTLVESSEKG 179
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLD 236
+ + R Q+ AVFL WEPHP+N L + YL GG++ +G A V TV R + +
Sbjct: 180 MLNHVERAQQMGRSAVFLGWEPHPMNDRLRMFYLSGGDQYFGPNYGAAQVNTVTRGGFAN 239
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTF 294
+CPN+++L +N+ F++A EN++M +L +R+ V + + +P+L+ WL GV
Sbjct: 240 ECPNVAQLFRNMVFTIAAENQLMSGVLEGNTNRRRVAKQWMDKNPELVNGWLAGVNRR 297
>gi|84515314|ref|ZP_01002676.1| putative glycine betaine-binding ABC transporter protein
[Loktanella vestfoldensis SKA53]
gi|84510597|gb|EAQ07052.1| putative glycine betaine-binding ABC transporter protein
[Loktanella vestfoldensis SKA53]
Length = 307
Score = 205 bits (521), Expect = 7e-51, Method: Composition-based stats.
Identities = 135/310 (43%), Positives = 188/310 (60%), Gaps = 8/310 (2%)
Query: 1 MY-KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M K L + ++A C V F+D GWTDI ATTA T+V+L LGY+T
Sbjct: 1 MKLKSSLSALAIVAAMPAFA----ECDLVTFSDVGWTDITATTATTTVVL-NALGYQTET 55
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
KLL+VPVT+ SL ID+F+G W P++E IAPY E G++ V NL+GAKY LAVN
Sbjct: 56 KLLSVPVTYISLAEGDIDVFLGNWMPTMEADIAPYREAGTVDTVRANLEGAKYTLAVNRA 115
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
LGI ++ DI + L KIYGIEPGN+GN+ I+DMI + F L GF ++E+SE
Sbjct: 116 AADLGIATFADIVTHADALENKIYGIEPGNDGNRLIMDMIAADAFGLTGFEVVESSEQGM 175
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF--GEASVYTVVRSDYLDK 237
+Q+ R + P VFL WEPHP+N++ ++ YL GG++ G GEA+VYT + Y +
Sbjct: 176 LAQVDRAAGRSEPVVFLGWEPHPMNANFDMVYLEGGDDWFGPNLGEATVYTNTTAGYAES 235
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQ 297
CPN+ +LL N++FS+A+ENE+M I ++ L +P +L WL GVTT DG
Sbjct: 236 CPNVGQLLNNLEFSLAMENEIMAAISDDGMAPDAAASAWLAANPAVLDGWLNGVTTRDGG 295
Query: 298 DPSRQLERFM 307
D ++ +
Sbjct: 296 DGMAAVKTAL 305
>gi|227552551|ref|ZP_03982600.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, membrane/binding protein
[Enterococcus faecium TX1330]
gi|257896894|ref|ZP_05676547.1| glycine betaine/L-proline ABC transporter [Enterococcus faecium
Com12]
gi|293378476|ref|ZP_06624639.1| ABC transporter, substrate-binding protein, QAT family
[Enterococcus faecium PC4.1]
gi|227178300|gb|EEI59272.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, membrane/binding protein
[Enterococcus faecium TX1330]
gi|257833459|gb|EEV59880.1| glycine betaine/L-proline ABC transporter [Enterococcus faecium
Com12]
gi|292642805|gb|EFF60952.1| ABC transporter, substrate-binding protein, QAT family
[Enterococcus faecium PC4.1]
Length = 574
Score = 205 bits (520), Expect = 9e-51, Method: Composition-based stats.
Identities = 64/282 (22%), Positives = 117/282 (41%), Gaps = 11/282 (3%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP 65
AV + L I A + + W A+T + +L++ +GY + L
Sbjct: 302 AVVVILGAIGIGSFSSAKETKRINLSYVEWDTEVASTNVVGEVLKQ-MGYDVTMTPLDNS 360
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
+ ++S+ N D + W P + ++ + NL GAK LAV
Sbjct: 361 IMWKSVSNGESDAMVSAWLPKTHGS-QYAQYKDQVEDLGANLTGAKVGLAVPAYM----- 414
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
I + + G KI GIEPG + I +LK +++ +S A + +
Sbjct: 415 -DVNSIDELTDQAGKKIIGIEPGAGVVTAAENTIKKYD-NLKDWKVETSSSGAMTVALGQ 472
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
+ + P V W PH + + ++ YL E G E ++T+VR + P ++L
Sbjct: 473 AIKKHEPIVVTGWTPHWMFAKYDLKYLEDPENGMGS-EEQIHTMVRKGLKEDQPEAYKVL 531
Query: 246 KNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
N +S ++M I NN +D Q + ++ + +L+++W
Sbjct: 532 DNFHWSEKDMEKVMLEI-NNGKDPQQAAKDWIKENQELVESW 572
>gi|78063645|ref|YP_373553.1| ABC proline/glycine betaine transporter, periplasmic ligand binding
protein [Burkholderia sp. 383]
gi|77971530|gb|ABB12909.1| ABC proline/glycine betaine transporter, periplasmic ligand binding
protein [Burkholderia sp. 383]
Length = 314
Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats.
Identities = 117/289 (40%), Positives = 173/289 (59%), Gaps = 5/289 (1%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
+ D C V D GW+DIAATT + ++L + LGY+ + + P+ +K ID F
Sbjct: 24 SEGDVCKKVTLGDVGWSDIAATTGVAMMLL-DGLGYEATKTIASPPIVLAGVKKAQIDAF 82
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL 138
+GYW PS+ + P+++ G++ + NL GA+Y LAV G+KS+ DIAK++ +L
Sbjct: 83 LGYWDPSMTPTVKPFVDAGAVHQLPQPNLIGARYTLAVPQYASDKGLKSFADIAKFRDQL 142
Query: 139 GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
KIYGI GN GN I MI+ N+F L GF+L+E+SE Q+ R + + VFL+W
Sbjct: 143 DGKIYGIGAGNNGNALIQRMIDKNEFGLGGFKLVESSEAGMLVQVTRAVQEHRMIVFLAW 202
Query: 199 EPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALEN 256
EPHP+N + I YL GG+ + +G A VYT+V YLD+CPN+ RLL N+KF+ EN
Sbjct: 203 EPHPMNINYKIAYLDGGDTVFGPNYGSAKVYTLVTPGYLDRCPNVGRLLTNLKFTTDEEN 262
Query: 257 EMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLER 305
++M I+ N D V + + +P +L WL GVTT DG++ +E+
Sbjct: 263 QLMVPIM-NHADPVAVAKEWAKKNPGVLSKWLDGVTTIDGKNAKDAIEK 310
>gi|257888218|ref|ZP_05667871.1| glycine betaine/L-proline ABC transporter [Enterococcus faecium
1,141,733]
gi|257824272|gb|EEV51204.1| glycine betaine/L-proline ABC transporter [Enterococcus faecium
1,141,733]
Length = 575
Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats.
Identities = 63/282 (22%), Positives = 116/282 (41%), Gaps = 11/282 (3%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP 65
V + L I A + + W A+T + +L++ +GY + L
Sbjct: 303 VVVVILGAIGIGSFSSAKETKRINLSYVEWDTEVASTNVVGEVLKQ-MGYDVTMTPLDNS 361
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
+ ++S+ N D + W P + ++ + NL GAK LAV
Sbjct: 362 IMWKSVSNGESDAMVSAWLPKTHGS-QYAQYKDQVEDLGANLTGAKVGLAVPAYM----- 415
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
I + + G KI GIEPG + I +LK +++ +S A + +
Sbjct: 416 -DVNSIDELTDQAGKKIIGIEPGAGVVTAAENTIKKYD-NLKDWKVETSSSGAMTVALGQ 473
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
+ + P V W PH + + ++ YL E G E ++T+VR + P ++L
Sbjct: 474 AIKKHEPIVVTGWTPHWMFAKYDLKYLEDPENGMGS-EEQIHTMVRKGLKEDQPEAYKVL 532
Query: 246 KNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
N +S ++M I NN +D Q + ++ + +L+++W
Sbjct: 533 DNFHWSEKDMEKVMLEI-NNGKDPQQAAKDWIKENQELVESW 573
>gi|309389355|gb|ADO77235.1| Substrate-binding region of ABC-type glycine betaine transport
system [Halanaerobium praevalens DSM 2228]
Length = 313
Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats.
Identities = 88/314 (28%), Positives = 154/314 (49%), Gaps = 7/314 (2%)
Query: 1 MYKI-----LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M KI L + L + + + F W + T + + I + LGY
Sbjct: 1 MKKIKLISSLLIVLLAFGVFTIVPQVNAADDTINFGYVQWPGVTIKTHVAAKIA-DYLGY 59
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
+T + + + F+SL+ K +D+F+G W P+++ Y E+G++ V NL+ Y A
Sbjct: 60 ETKMTAASQAIIFKSLETKDLDVFLGNWLPTMKMHFDKYQEKGAVHNVRVNLEDVVYRTA 119
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
V + G++S D+ ++ + +IYGIEPGN+GN I + I NN ++L+ + L E+S
Sbjct: 120 VPKYVWEAGVRSLADLNEHADKFDQEIYGIEPGNDGNLIIQEAIKNNTYNLEDWTLRESS 179
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYL 235
S ++R RN F W+PH +N ++ YL E I G ++ V+TV R+ Y
Sbjct: 180 TAGMLSSVKRAYRNEEWIAFNGWKPHYMNVLFDLKYLKDPEGIWGENDS-VHTVARNGYQ 238
Query: 236 DKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFD 295
+ PN + L+ ++N+ + N +D + V + + D++ W+ GV T D
Sbjct: 239 AENPNFYKFLEQFAVPAPIQNKWIDEYQNKGRDPEEVAEEWIANNLDIVNQWVFGVKTTD 298
Query: 296 GQDPSRQLERFMNN 309
GQ + + +NN
Sbjct: 299 GQMARKAISNKINN 312
>gi|260463325|ref|ZP_05811526.1| choline ABC transporter, periplasmic binding protein [Mesorhizobium
opportunistum WSM2075]
gi|259030915|gb|EEW32190.1| choline ABC transporter, periplasmic binding protein [Mesorhizobium
opportunistum WSM2075]
Length = 312
Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats.
Identities = 104/285 (36%), Positives = 165/285 (57%), Gaps = 5/285 (1%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWY 84
C VR A+ GW D+A TT + +V+L + LGY+ ++L + V + +KN+ +D+F+GYW
Sbjct: 29 CRTVRMAEPGWNDLAFTTGVANVLL-QALGYQPQSEVLGINVIYEGMKNRDLDLFLGYWD 87
Query: 85 PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYG 144
P++ + PY ++GSI+ V NL GAKY AV + G+K D+ K+ + G K+YG
Sbjct: 88 PAMVTYYEPYKKDGSIENVRVNLVGAKYTFAVPTYVWEAGVKDIADLHKFADKFGKKMYG 147
Query: 145 IEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPIN 204
IEPG NQ ++D I + F L G+ ++E+SE S++ + + VF W PHP+N
Sbjct: 148 IEPG--SNQLMMDAIADPSFGLDGWHVVESSEAGMLSEVGYEIKEKQFIVFQGWAPHPMN 205
Query: 205 SDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI 262
+ + YL GG++ FG A+V T VR YLD+CPN+++ LKN+ F + EN M +
Sbjct: 206 TMYDFKYLTGGDKFFGPNFGAATVTTQVRKGYLDQCPNVAQFLKNLAFDIDFENVGMGYL 265
Query: 263 LNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+N+ + + + L WL GVTTFDG+ ++ +
Sbjct: 266 INDGMKPEDGALKAVTLNKSRLDAWLAGVTTFDGKPGLAAVKEKL 310
>gi|293570838|ref|ZP_06681885.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding/permease protein [Enterococcus
faecium E980]
gi|291609106|gb|EFF38381.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding/permease protein [Enterococcus
faecium E980]
Length = 575
Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats.
Identities = 63/282 (22%), Positives = 116/282 (41%), Gaps = 11/282 (3%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP 65
V + L I A + + W A+T + +L++ +GY + L
Sbjct: 303 VVVVILGAIGIGSFSSAKETKRINLSYVEWDTEVASTNVVGEVLKQ-MGYDVTMTPLDNS 361
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
+ ++S+ N D + W P + ++ + NL GAK LAV
Sbjct: 362 IMWKSVSNGESDAMVSAWLPKTHGS-QYAQYKDQVEDLGANLTGAKVGLAVPAYM----- 415
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
I + + G KI GIEPG + I +LK +++ +S A + +
Sbjct: 416 -DVNSIDELTDQAGKKIIGIEPGAGVVTAAENTIQKYD-NLKDWKVETSSSGAMTVALGQ 473
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
+ + P V W PH + + ++ YL E G E ++T+VR + P ++L
Sbjct: 474 AIKKHEPIVVTGWTPHWMFAKYDLKYLEDPENGMGS-EEQIHTMVRKGLKEDQPEAYKVL 532
Query: 246 KNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
N +S ++M I NN +D Q + ++ + +L+++W
Sbjct: 533 DNFHWSEKDMEKVMLEI-NNGKDPQQAAKEWIKENQELVESW 573
>gi|257899649|ref|ZP_05679302.1| glycine betaine/L-proline ABC transporter [Enterococcus faecium
Com15]
gi|257837561|gb|EEV62635.1| glycine betaine/L-proline ABC transporter [Enterococcus faecium
Com15]
Length = 575
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 63/282 (22%), Positives = 116/282 (41%), Gaps = 11/282 (3%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP 65
V + L I A + + W A+T + +L++ +GY + L
Sbjct: 303 VVVVILGAIGIGSFSSAKETKRINLSYVEWDTEVASTNVVGEVLKQ-MGYDVTMTPLDNS 361
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
+ ++S+ N D + W P + ++ + NL GAK LAV
Sbjct: 362 IMWKSVSNGESDAMVSAWLPKTHGS-QYAQYKDQVEDLGANLTGAKVGLAVPAYM----- 415
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
I + + G KI GIEPG + I +LK +++ +S A + +
Sbjct: 416 -DVNSIDELTDQAGKKIIGIEPGAGVVTAAENTIQKYD-NLKDWKVETSSSGAMTVALGQ 473
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
+ + P V W PH + + ++ YL E G E ++T+VR + P ++L
Sbjct: 474 AIKKHEPIVVTGWTPHWMFAKYDLKYLEDPENGMGS-EEQIHTMVRKGLKEDQPEAYKVL 532
Query: 246 KNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
N +S ++M I NN +D Q + ++ + +L+++W
Sbjct: 533 DNFHWSEKDMEKVMLEI-NNGKDPQQAAKEWIKENQELVESW 573
>gi|293553996|ref|ZP_06674598.1| glycine betaine/L-proline ABC transporter,
substrate-binding/permease protein [Enterococcus faecium
E1039]
gi|291601853|gb|EFF32103.1| glycine betaine/L-proline ABC transporter,
substrate-binding/permease protein [Enterococcus faecium
E1039]
Length = 574
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 64/282 (22%), Positives = 117/282 (41%), Gaps = 11/282 (3%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP 65
AV + L I A + + W A+T + +L++ +GY + L
Sbjct: 302 AVVVILGAIGIGSFSSAKETKRINLSYVEWDTEVASTNVVGEVLKQ-MGYDVTMTPLDNS 360
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
+ ++S+ N D + W P + ++ + NL GAK LAV
Sbjct: 361 IMWKSVSNGESDAMVSAWLPKTHGS-QYAQYKDQVEDLGANLTGAKVGLAVPAYM----- 414
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
I + + G KI GIEPG + I +LK +++ +S A + +
Sbjct: 415 -DVNSIDELTDQAGKKIIGIEPGAGVVTAAENTIQKYD-NLKDWKVETSSSGAMTVALGQ 472
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
+ + P V W PH + + ++ YL E G E ++T+VR + P ++L
Sbjct: 473 AIKKHEPIVVTGWTPHWMFAKYDLKYLEDPENGMGS-EEQIHTMVRKGLKEDQPEAYKVL 531
Query: 246 KNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
N +S ++M I NN +D Q + ++ + +L+++W
Sbjct: 532 DNFHWSEKDMEKVMLEI-NNGKDPQQAAKDWIKENQELVESW 572
>gi|222153813|ref|YP_002562990.1| glycine-betaine binding permease [Streptococcus uberis 0140J]
gi|222114626|emb|CAR43642.1| putative glycine-betaine binding permease protein [Streptococcus
uberis 0140J]
Length = 575
Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 55/286 (19%), Positives = 112/286 (39%), Gaps = 10/286 (3%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
+ V T + + + V+ A W A+T + + +L+E GY+ +I L
Sbjct: 300 VFLVGALGHTVTTLASGSGEKGQKVKIAYMQWDSEIASTNVIAEVLKEE-GYQVDITPLD 358
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
V ++++ N D + W P + ++ + + NL+G K L V
Sbjct: 359 NAVMWQTVANGNADFTVSPWLPVTQAEHMKKYKD-KVDDLGPNLKGTKLGLVVPTYM--- 414
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
K I + KI GIEPG + +L + L+ +S A + +
Sbjct: 415 --KDVNSIEDLSDQAKKKITGIEPGAGITTATQKTLKAYS-NLSDWELVLSSTGAMTTSL 471
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
+ +N + W PH + S ++ YL + + GE ++ T+ R P + +
Sbjct: 472 DQAIKNKEEIIVTGWSPHWMFSKYDLKYLEDP-KKTLGGEENIQTIARLGLKKDMPKLYK 530
Query: 244 LLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
++ ++ A +M + NN + + ++ + D + W+
Sbjct: 531 IIDKFHWTTADMESVMLDM-NNGMKPEDAAKKWVKANKDKVSKWVD 575
>gi|257885408|ref|ZP_05665061.1| glycine betaine/L-proline ABC transporter [Enterococcus faecium
1,231,501]
gi|257821264|gb|EEV48394.1| glycine betaine/L-proline ABC transporter [Enterococcus faecium
1,231,501]
Length = 571
Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 63/282 (22%), Positives = 116/282 (41%), Gaps = 11/282 (3%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP 65
V + L I A + + W A+T + +L++ +GY + L
Sbjct: 299 VVVVILGAIGIGSFSSAKETKRINLSYVEWDTEVASTNVVGEVLKQ-MGYDVTMTPLDNS 357
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
+ ++S+ N D + W P + ++ + NL GAK LAV
Sbjct: 358 IMWKSVSNGESDAMVSAWLPKTHGS-QYAQYKDQVEDLGANLTGAKVGLAVPAYM----- 411
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
I + + G KI GIEPG + I +LK +++ +S A + +
Sbjct: 412 -DVNSIDELTDQAGKKIIGIEPGAGVVTAAENTIQKYD-NLKDWKVETSSSGAMTVALGQ 469
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
+ + P V W PH + + ++ YL E G E ++T+VR + P ++L
Sbjct: 470 AIKKHEPIVVTGWTPHWMFAKYDLKYLEDPENGMGS-EEQIHTMVRKGLKEDQPEAYKVL 528
Query: 246 KNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
N +S ++M I NN +D Q + ++ + +L+++W
Sbjct: 529 DNFHWSEKDMEKVMLEI-NNGKDPQQAAKDWIKENQELVESW 569
>gi|69245959|ref|ZP_00603731.1| Binding-protein-dependent transport systems inner membrane
component:Substrate-binding region of ABC-type glycine
betaine transport system [Enterococcus faecium DO]
gi|293563167|ref|ZP_06677625.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding/permease protein [Enterococcus
faecium E1162]
gi|294623125|ref|ZP_06702011.1| glycine betaine/L-proline ABC transporter,
substrate-binding/permease protein [Enterococcus faecium
U0317]
gi|314939370|ref|ZP_07846611.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecium
TX0133a04]
gi|314941573|ref|ZP_07848458.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecium TX0133C]
gi|314949600|ref|ZP_07852924.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecium TX0082]
gi|314953707|ref|ZP_07856582.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecium TX0133A]
gi|314992163|ref|ZP_07857607.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecium TX0133B]
gi|314997654|ref|ZP_07862584.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecium
TX0133a01]
gi|68195489|gb|EAN09933.1| Binding-protein-dependent transport systems inner membrane
component:Substrate-binding region of ABC-type glycine
betaine transport system [Enterococcus faecium DO]
gi|281335146|gb|ADA62230.1| Glycine betaine ABC transport system, permease protein OpuAB /
Glycine betaine ABC transport system, glycine
betaine-binding protein OpuAC [Enterococcus faecium]
gi|291597494|gb|EFF28659.1| glycine betaine/L-proline ABC transporter,
substrate-binding/permease protein [Enterococcus faecium
U0317]
gi|291604858|gb|EFF34334.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding/permease protein [Enterococcus
faecium E1162]
gi|313588289|gb|EFR67134.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecium
TX0133a01]
gi|313593266|gb|EFR72111.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecium TX0133B]
gi|313594291|gb|EFR73136.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecium TX0133A]
gi|313599632|gb|EFR78475.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecium TX0133C]
gi|313641355|gb|EFS05935.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecium
TX0133a04]
gi|313644024|gb|EFS08604.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecium TX0082]
Length = 575
Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 63/282 (22%), Positives = 116/282 (41%), Gaps = 11/282 (3%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP 65
V + L I A + + W A+T + +L++ +GY + L
Sbjct: 303 VVVVILGAIGIGSFSSAKETKRINLSYVEWDTEVASTNVVGEVLKQ-MGYDVTMTPLDNS 361
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
+ ++S+ N D + W P + ++ + NL GAK LAV
Sbjct: 362 IMWKSVSNGESDAMVSAWLPKTHGS-QYAQYKDQVEDLGANLTGAKVGLAVPAYM----- 415
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
I + + G KI GIEPG + I +LK +++ +S A + +
Sbjct: 416 -DVNSIDELTDQAGKKIIGIEPGAGVVTAAENTIQKYD-NLKDWKVETSSSGAMTVALGQ 473
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
+ + P V W PH + + ++ YL E G E ++T+VR + P ++L
Sbjct: 474 AIKKHEPIVVTGWTPHWMFAKYDLKYLEDPENGMGS-EEQIHTMVRKGLKEDQPEAYKVL 532
Query: 246 KNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
N +S ++M I NN +D Q + ++ + +L+++W
Sbjct: 533 DNFHWSEKDMEKVMLEI-NNGKDPQQAAKDWIKENQELVESW 573
>gi|257880362|ref|ZP_05660015.1| glycine betaine/L-proline ABC transporter [Enterococcus faecium
1,230,933]
gi|257882213|ref|ZP_05661866.1| glycine betaine/L-proline ABC transporter [Enterococcus faecium
1,231,502]
gi|257891020|ref|ZP_05670673.1| glycine betaine/L-proline ABC transporter [Enterococcus faecium
1,231,410]
gi|257894273|ref|ZP_05673926.1| glycine betaine/L-proline ABC transporter [Enterococcus faecium
1,231,408]
gi|260562336|ref|ZP_05832850.1| glycine betaine/L-proline ABC transporter [Enterococcus faecium
C68]
gi|257814590|gb|EEV43348.1| glycine betaine/L-proline ABC transporter [Enterococcus faecium
1,230,933]
gi|257817871|gb|EEV45199.1| glycine betaine/L-proline ABC transporter [Enterococcus faecium
1,231,502]
gi|257827380|gb|EEV54006.1| glycine betaine/L-proline ABC transporter [Enterococcus faecium
1,231,410]
gi|257830652|gb|EEV57259.1| glycine betaine/L-proline ABC transporter [Enterococcus faecium
1,231,408]
gi|260073260|gb|EEW61601.1| glycine betaine/L-proline ABC transporter [Enterococcus faecium
C68]
Length = 571
Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats.
Identities = 63/282 (22%), Positives = 116/282 (41%), Gaps = 11/282 (3%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP 65
V + L I A + + W A+T + +L++ +GY + L
Sbjct: 299 VVVVILGAIGIGSFSSAKETKRINLSYVEWDTEVASTNVVGEVLKQ-MGYDVTMTPLDNS 357
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
+ ++S+ N D + W P + ++ + NL GAK LAV
Sbjct: 358 IMWKSVSNGESDAMVSAWLPKTHGS-QYAQYKDQVEDLGANLTGAKVGLAVPAYM----- 411
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
I + + G KI GIEPG + I +LK +++ +S A + +
Sbjct: 412 -DVNSIDELTDQAGKKIIGIEPGAGVVTAAENTIQKYD-NLKDWKVETSSSGAMTVALGQ 469
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
+ + P V W PH + + ++ YL E G E ++T+VR + P ++L
Sbjct: 470 AIKKHEPIVVTGWTPHWMFAKYDLKYLEDPENGMGS-EEQIHTMVRKGLKEDQPEAYKVL 528
Query: 246 KNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
N +S ++M I NN +D Q + ++ + +L+++W
Sbjct: 529 DNFHWSEKDMEKVMLEI-NNGKDPQQAAKDWIKENQELVESW 569
>gi|289567008|ref|ZP_06447409.1| ABC transporter, glycine-betaine/proline permease [Enterococcus
faecium D344SRF]
gi|294615264|ref|ZP_06695141.1| glycine betaine/L-proline ABC transporter,
substrate-binding/permease protein [Enterococcus faecium
E1636]
gi|294617327|ref|ZP_06696966.1| glycine betaine/L-proline ABC transporter,
substrate-binding/permease protein [Enterococcus faecium
E1679]
gi|289161209|gb|EFD09108.1| ABC transporter, glycine-betaine/proline permease [Enterococcus
faecium D344SRF]
gi|291591861|gb|EFF23493.1| glycine betaine/L-proline ABC transporter,
substrate-binding/permease protein [Enterococcus faecium
E1636]
gi|291596400|gb|EFF27654.1| glycine betaine/L-proline ABC transporter,
substrate-binding/permease protein [Enterococcus faecium
E1679]
Length = 575
Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats.
Identities = 63/282 (22%), Positives = 116/282 (41%), Gaps = 11/282 (3%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP 65
V + L I A + + W A+T + +L++ +GY + L
Sbjct: 303 VVVVILGAIGIGSFSSAKETKRINLSYVEWDTEVASTNVVGEVLKQ-MGYDVTMTPLDNS 361
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
+ ++S+ N D + W P + ++ + NL GAK LAV
Sbjct: 362 IMWKSVSNGESDAMVSAWLPKTHGS-QYAQYKDQVEDLGANLTGAKVGLAVPAYM----- 415
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
I + + G KI GIEPG + I +LK +++ +S A + +
Sbjct: 416 -DVNSIDELTDQAGKKIIGIEPGAGVVTAAENTIQKYD-NLKDWKVETSSSGAMTVALGQ 473
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
+ + P V W PH + + ++ YL E G E ++T+VR + P ++L
Sbjct: 474 AIKKHEPIVVTGWTPHWMFAKYDLKYLEDPENGMGS-EEQIHTMVRKGLKEDQPEAYKVL 532
Query: 246 KNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
N +S ++M I NN +D Q + ++ + +L+++W
Sbjct: 533 DNFHWSEKDMEKVMLEI-NNGKDPQQAAKDWIKENQELVESW 573
>gi|153953415|ref|YP_001394180.1| ProX [Clostridium kluyveri DSM 555]
gi|219854040|ref|YP_002471162.1| hypothetical protein CKR_0697 [Clostridium kluyveri NBRC 12016]
gi|146346296|gb|EDK32832.1| ProX [Clostridium kluyveri DSM 555]
gi|219567764|dbj|BAH05748.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 299
Score = 203 bits (515), Expect = 3e-50, Method: Composition-based stats.
Identities = 68/298 (22%), Positives = 132/298 (44%), Gaps = 18/298 (6%)
Query: 1 MYKILAVCLFLTTFSISYAR---------DADSCTPVRFADTGWTDIAATTAMTSVILEE 51
+ KI+ + + + + D +S V+ W + A T + S IL++
Sbjct: 6 LKKIVVLAFSIILIIGALSGCGNTIGDTNDKESKRTVKLVYVNWAEGIAMTNLVSAILQD 65
Query: 52 ILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAK 111
+GYK ++K V + F SL + +D+F+ W P K +G + + N + AK
Sbjct: 66 KMGYKVDMKQGDVGMVFTSLSSGDMDVFLDGWLPLTHKDYMDKY-KGKLDNLGVNFENAK 124
Query: 112 YMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
L V + I S +++ K ELG KI GI+ G + I + + L
Sbjct: 125 IGLVVPSY---MNINSIEELNGIKDELGGKIVGIDAGAGIMKVTNKAIKEYNLN---YEL 178
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVR 231
+E S + +++ + P V W+PH + ++ +L + + G E ++YT+ R
Sbjct: 179 LEGSGATMTAMLKKAEDKKEPIVVTGWKPHWKFATWDLKFLDDPKGVFGETE-NIYTITR 237
Query: 232 SDYLDKCPNISRLLKNIKFSVALENEMMKLI-LNNKQDRQFVGRTMLRTHPDLLKNWL 288
+ + P +++ LKN K + +M I N+ + V R ++ + +L+ +W+
Sbjct: 238 TGFEKDMPEVAQFLKNFKMNDQQLGSLMGDIKDNDSKKPIDVAREWMKNNEELVNSWV 295
>gi|261209289|ref|ZP_05923681.1| glycine betaine/L-proline ABC transporter [Enterococcus faecium TC
6]
gi|260076835|gb|EEW64570.1| glycine betaine/L-proline ABC transporter [Enterococcus faecium TC
6]
Length = 571
Score = 203 bits (515), Expect = 3e-50, Method: Composition-based stats.
Identities = 63/282 (22%), Positives = 116/282 (41%), Gaps = 11/282 (3%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP 65
V + L I A + + W A+T + +L++ +GY + L
Sbjct: 299 VVVVILGAIGIGSFSSAKETKRINLSYVEWDTEVASTNVVGEVLKQ-MGYDVTMTPLDNS 357
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
+ ++S+ N D + W P + ++ + NL GAK LAV
Sbjct: 358 IMWKSVSNGESDAMVSAWLPKTHGS-QYAQYKDQVEDLGANLTGAKVGLAVPAYM----- 411
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
I + + G KI GIEPG + I +LK +++ +S A + +
Sbjct: 412 -DVNSIDELTDQAGKKIIGIEPGAGVVTAAENTIQKYD-NLKDWKVETSSSGAMTVALGQ 469
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
+ + P V W PH + + ++ YL E G E ++T+VR + P ++L
Sbjct: 470 AIKKHEPIVVTGWTPHWMFAKYDLKYLEDPENGMGS-EEQIHTMVRKGLKEDQPEAYKVL 528
Query: 246 KNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
N +S ++M I NN +D Q + ++ + +L+++W
Sbjct: 529 DNFHWSEKDMEKVMLEI-NNGKDPQQAAKDWIKENQELVESW 569
>gi|28211935|ref|NP_782879.1| glycine betaine-binding protein [Clostridium tetani E88]
gi|28204378|gb|AAO36816.1| glycine betaine-binding protein [Clostridium tetani E88]
Length = 298
Score = 203 bits (515), Expect = 4e-50, Method: Composition-based stats.
Identities = 58/283 (20%), Positives = 111/283 (39%), Gaps = 8/283 (2%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP 65
+ V+ W + A T + V LEE +GY + +
Sbjct: 20 IILTTSVLAGCGKGAANKGKGNVKLGYVNWAEGVAMTNLAKVALEEKMGYDVELTMGEAG 79
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
+ F SL + ID F+ W P ++ I+ + N + A+ L V I
Sbjct: 80 MIFTSLSDGNIDAFLDAWLPVTHHDYVTKYKD-KIEDLGYNYENARIGLVVPK---NSDI 135
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
S +D+ K K +LG KI GI+ G + + ++E S ++
Sbjct: 136 NSIEDLNKVKGKLGGKIIGIDAGAGIMSATERAKKDYNLE---YEILEGSGPTMTVMLKE 192
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
V W+PH + ++ +L ++ G E +++T R + + P ++ L
Sbjct: 193 AIDKKQDIVVTGWKPHWKFARWDLKFLEDPKKSYGEAE-NIHTYSRKGFKEDMPEVAEFL 251
Query: 246 KNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
KN K + +M I ++K+D + V + + + +L+ +W+
Sbjct: 252 KNFKLNDEQLGTLMGDIADSKKDPEEVAKEWMAKNEELVNSWI 294
>gi|45358429|ref|NP_987986.1| glycine betaine ABC transporter substrate-binding protein
[Methanococcus maripaludis S2]
gi|44921187|emb|CAF30422.1| putative glycine betaine/L-proline ABC transporter, solute-binding
protein [Methanococcus maripaludis S2]
Length = 295
Score = 203 bits (515), Expect = 4e-50, Method: Composition-based stats.
Identities = 64/287 (22%), Positives = 123/287 (42%), Gaps = 6/287 (2%)
Query: 4 ILAVCLFLTTFSIS-YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL 62
+L + + + S + D ++F W + + + VILEE GY + L
Sbjct: 11 LLGLAVMFSGCVQSPQSTDDTEKGTIKFGLPPWPGVTVKSNVVKVILEEQ-GYNVELNQL 69
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
+T+ L + +D+ + W P+ + +++V N+ LAV +
Sbjct: 70 DAGITYAKLADGDLDVSLAGWLPTTHEEYWTQYG-NQLEMVHVNVGKTALGLAVPTYTYE 128
Query: 123 LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
GI+S D+ ++ KI GIEPG I++ G+ L +S A ++
Sbjct: 129 AGIQSITDLNGNEELFDGKIIGIEPGAGIMSNTEKAIDSYSL--SGYELQSSSTPAMMAE 186
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ R + V WEPH + +I L E++ G G+ VYT+ R+D+ D P +
Sbjct: 187 LARAINEDENIVVTVWEPHSVFFKFDIKMLDDPEKVYGDGD-KVYTIARTDFKDDYPEVY 245
Query: 243 RLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+ + ++++E + + D + V + +P+L++NW
Sbjct: 246 EFFQKFEVDPSVQSEWIYKYSDEGMDPEEVAEEWVANNPELVENWTS 292
>gi|92112354|ref|YP_572282.1| ABC-type glycine betaine transport system protein [Chromohalobacter
salexigens DSM 3043]
gi|91795444|gb|ABE57583.1| ABC-type glycine betaine transport system protein [Chromohalobacter
salexigens DSM 3043]
Length = 322
Score = 202 bits (513), Expect = 6e-50, Method: Composition-based stats.
Identities = 72/310 (23%), Positives = 138/310 (44%), Gaps = 5/310 (1%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL 62
K + L + A+ D T VRF+ W + T + + +L + LGY + L
Sbjct: 13 KAALLGACLAGLPLGMAQAQDDTTDVRFSVPPWPGVTVKTELAAQLL-DTLGYTPQQEQL 71
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
+T+++L +D F+ W P+ + LE+G + + N+ GA+ AV F
Sbjct: 72 GTTITYQALNQNELDAFLAGWLPAQQGMYDTALEKGKLVDLGNNVDGARIGFAVPSYVFD 131
Query: 123 LGIKSYQDI--AKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
G+ S +D+ + + G +Y IE G ++++ + ++ + L + L E S
Sbjct: 132 AGVTSAEDLDTPENAERFGRTVYSIETGTGMSEQLNAGVASDTYGLGDWELSETSTPGML 191
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKC 238
N VF W PH +N +I YL E++ G + V T+V + +
Sbjct: 192 GAADSAIDNQEWIVFAGWTPHWMNIKYDIAYLDDPEDLWGEDGGRSDVRTLVTKTFSETH 251
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
PN +RLL + F+ +++M++ + + +R + D ++ ++ GVTT DG+
Sbjct: 252 PNATRLLDQLDFTADDQSDMIRRYDQDGMPKDEAAIAWMRDNADKVEGFVDGVTTRDGEP 311
Query: 299 PSRQLERFMN 308
++ +
Sbjct: 312 AWPVVKEAFD 321
>gi|167722697|ref|ZP_02405933.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei DM98]
Length = 278
Score = 202 bits (513), Expect = 6e-50, Method: Composition-based stats.
Identities = 103/277 (37%), Positives = 162/277 (58%), Gaps = 3/277 (1%)
Query: 34 GWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP 93
GWTDI AT A+ V+L+ LGY+ ++ L+VP+T++ LK +D+F+G W P+ + P
Sbjct: 1 GWTDIEATNALAGVVLKA-LGYRQSVSNLSVPITYQGLKKGQLDVFLGNWMPAQAPLVKP 59
Query: 94 YLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQ 153
+++ +I ++ NL AK+ LAV D A G+ S+ D+AKY + GAKIYGIEPG NQ
Sbjct: 60 FVDARAIDVLHANLSHAKFTLAVPDYVAAAGVHSFADLAKYAQRFGAKIYGIEPGAPANQ 119
Query: 154 RILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLP 213
I M+ + ++L+E+SE +Q+ R R VFL WEPH +N+ ++ YL
Sbjct: 120 NISRMLADKALGPANWQLVESSETGMLTQVERAVRERQWIVFLGWEPHLMNTKFHLVYLS 179
Query: 214 GGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQF 271
GG+ +G A+V TV R+D+ +C N++RL + + F+V LEN M+ +L K+
Sbjct: 180 GGDAYFGPDYGGATVNTVARADFASQCANLARLFRQMTFTVDLENGMIAAMLQGKRSAVD 239
Query: 272 VGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
+ LR +P L++ WL GV T G + ++
Sbjct: 240 AAQHALRANPALVEAWLDGVRTASGAPGLPAVRAALD 276
>gi|307544158|ref|YP_003896637.1| ABC transporter periplasmic protein [Halomonas elongata DSM 2581]
gi|307216182|emb|CBV41452.1| ABC-type transport system periplasmic substrate-binding protein
[Halomonas elongata DSM 2581]
Length = 312
Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats.
Identities = 77/285 (27%), Positives = 145/285 (50%), Gaps = 3/285 (1%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPS 86
+ F W I T + + +LE LGY+T + L + V ++ L + +D+F+G W P+
Sbjct: 28 TLDFGVPAWPGITVKTEIAAQLLE-PLGYETRAEELGMQVVYQGLDSGDLDVFLGGWLPA 86
Query: 87 LEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE 146
P E G+I +A N+ GA+ LAV + + GI+S+ D+ + KI+G
Sbjct: 87 QNSIYTPLEESGAITPLANNVDGARMTLAVPEYLYEQGIQSFADLDANRDSFEGKIFGFG 146
Query: 147 PGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSD 206
G+ ++ + + I+N+ + L ++L++ S + + R P V++ W PH +N +
Sbjct: 147 AGSAASEILNEAIDNDTWGLGDWQLVDTSVVGMLTAARDAISREEPIVWVGWTPHWMNLE 206
Query: 207 LNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILN 264
+++ YL +++ G + V +V RSDY + PN+ N FS ++ M++
Sbjct: 207 MDMRYLDDPQDLFGENNGASQVLSVARSDYAEAHPNLVDFFANFTFSAEEQSWMIREFGQ 266
Query: 265 NKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMNN 309
++ + V + LR HP+ ++ L GVTT DG +E+ + +
Sbjct: 267 KERGVEAVAQQWLREHPERVQAMLEGVTTRDGDPAWPAVEKALAS 311
>gi|220932981|ref|YP_002509889.1| Substrate-binding region of ABC-type glycine betaine transport
system [Halothermothrix orenii H 168]
gi|219994291|gb|ACL70894.1| Substrate-binding region of ABC-type glycine betaine transport
system [Halothermothrix orenii H 168]
Length = 285
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 64/272 (23%), Positives = 113/272 (41%), Gaps = 9/272 (3%)
Query: 18 YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGID 77
T ++ W + A T + VI+E+ LGY+ + V F+ + + ID
Sbjct: 22 GCTSKPGKTKIKLGYVNWAEGIAMTHLAKVIIEDELGYEVQTVMADVGPIFQGMASGNID 81
Query: 78 IFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKE 137
FM W P LE+ I + +N GA+ L V I S +D+ +YK +
Sbjct: 82 AFMDVWLPVTHGEYVNKLED-DIIRLGKNFTGARIGLVVPTYV---EIDSIEDLNQYKDK 137
Query: 138 LGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLS 197
KI GI+ G Q+ I L LIE S A + +++ N V
Sbjct: 138 FDGKIIGIDAGAGIMQKTRKAIEEYGLEL---ELIEGSGPAMAAALKKAIDNGEWIVVTG 194
Query: 198 WEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENE 257
W+PH + ++ +L + G E ++YT R+ + + P ++ L+N S
Sbjct: 195 WQPHWKFARFDLKFLKDPRGVYGQAE-NLYTYTRTGFEEDAPGVANFLENFSMSSKQLGS 253
Query: 258 MMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+M +I + + R ++ + +++ WL
Sbjct: 254 LMGIIA-DGKKPVTAAREWIKNNREVVDGWLN 284
>gi|293568393|ref|ZP_06679714.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding/permease protein [Enterococcus
faecium E1071]
gi|291588914|gb|EFF20741.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding/permease protein [Enterococcus
faecium E1071]
Length = 575
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 63/282 (22%), Positives = 116/282 (41%), Gaps = 11/282 (3%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP 65
V + L I A + + W A+T + +L++ +GY + L
Sbjct: 303 VVVVILGAIGIGNFSSAKETKRINLSYVEWDTEVASTNVVGEVLKQ-MGYDVTMTPLDNS 361
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
+ ++S+ N D + W P + ++ + NL GAK LAV
Sbjct: 362 IMWKSVSNGESDAMVSAWLPKTHGS-QYAQYKDQVEDLGANLTGAKVGLAVPAYM----- 415
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
I + + G KI GIEPG + I +LK +++ +S A + +
Sbjct: 416 -DVNSIDELTDQAGKKIIGIEPGAGVVTAAENTIQKYD-NLKDWKVETSSSGAMTVALGQ 473
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
+ + P V W PH + + ++ YL E G E ++T+VR + P ++L
Sbjct: 474 AIKKHEPIVVTGWTPHWMFAKYDLKYLEDPENGMGS-EEQIHTMVRKGLKEVQPEAYKVL 532
Query: 246 KNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
N +S ++M I NN +D Q + ++ + +L+++W
Sbjct: 533 DNFHWSEKDMEKVMLEI-NNGKDPQQAAKDWIKENQELVESW 573
>gi|307546978|ref|YP_003899457.1| ABC transporter periplasmic protein [Halomonas elongata DSM 2581]
gi|307219002|emb|CBV44272.1| ABC-type transport system periplasmic substrate-binding protein
[Halomonas elongata DSM 2581]
Length = 290
Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats.
Identities = 51/286 (17%), Positives = 105/286 (36%), Gaps = 9/286 (3%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL 62
+I + L + + A V W+ A+T + +LE+ GY + L
Sbjct: 11 RIAGLALAAGSVLAAGNVQAQDKGTVELGYVEWSSEVASTNVVRAVLEQA-GYDVELTSL 69
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
+ ++++ + D + W P+ + + ++ + NL G K L V +
Sbjct: 70 SAAAMWQAVASGDSDAIVAAWLPTTHADYLERVGD-KVENLGPNLDGTKLGLVVPEYT-- 126
Query: 123 LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ S ++ KI GI+PG ++ L L S +
Sbjct: 127 -DVGSIDELNANADTFNNKIIGIDPGAGLMGLTEQVVEEYGLDL---DLQSGSGATMTAA 182
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
++ +N V W PH + + ++ YL + + G G + T+VR P
Sbjct: 183 LQSAIQNEEDVVVTGWTPHWMFARWDLKYLDDPKNVYG-GAEHINTIVRQGLKKDMPEAY 241
Query: 243 RLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+L +++ E+M + D + + + D+++ WL
Sbjct: 242 AILDAFEWTPEQMGEVMLMNQEEGSDPYENAKQWVEDNQDVVQEWL 287
>gi|134045711|ref|YP_001097197.1| glycine betaine ABC transporter substrate-binding protein
[Methanococcus maripaludis C5]
gi|132663336|gb|ABO34982.1| Substrate-binding region of ABC-type glycine betaine transport
system [Methanococcus maripaludis C5]
Length = 295
Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats.
Identities = 63/287 (21%), Positives = 123/287 (42%), Gaps = 6/287 (2%)
Query: 4 ILAVCLFLTTFSISY-ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL 62
IL + + + S + + ++F W + + + VILEE GY + L
Sbjct: 11 ILGLAVMFSGCVQSSESTEDLEKGTIKFGLPPWPGVTVKSEVVKVILEEQ-GYNVELNQL 69
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
+T+ L +DI + W P+ + + +++V N++ LAV +
Sbjct: 70 DAGITYAKLAEGELDILLAGWLPTTHQDYWAQYGD-QLEMVHVNIERTALGLAVPTYTYE 128
Query: 123 LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
GI+S D+ ++ A+I GIEPG + I G+ L +S A ++
Sbjct: 129 SGIQSITDLNGNEELFDARIVGIEPGAGIMSSTENAIETYGLE--GYELQSSSTPAMMAE 186
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ R N + WEPH + NI L E++ G G+ VYT+ R+D+ D P +
Sbjct: 187 LARAMNENENIIVTVWEPHSVFFKFNITMLDDPEKVYGDGD-KVYTIARNDFKDDYPEVY 245
Query: 243 RLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+ + ++++ + + +D + + + +P+L+ W+
Sbjct: 246 EFFQKFEVDPSVQSGWIYEYSDEGKDPEEIAEEWVANNPELVAEWIS 292
>gi|254450682|ref|ZP_05064119.1| substrate-binding region of ABC-type glycine betaine transport
system [Octadecabacter antarcticus 238]
gi|198265088|gb|EDY89358.1| substrate-binding region of ABC-type glycine betaine transport
system [Octadecabacter antarcticus 238]
Length = 311
Score = 200 bits (507), Expect = 3e-49, Method: Composition-based stats.
Identities = 126/311 (40%), Positives = 188/311 (60%), Gaps = 6/311 (1%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M L++ + S A+ C+ V F+D GWTDI ATTA T+V+L LGY+T+IK
Sbjct: 1 MKSTLSILAICAAGAASADGHAN-CSLVTFSDVGWTDITATTAATTVVL-GALGYETDIK 58
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+L+VPVT+ S+ ID+F+G W P++E IA Y + G++ V NL+GAKY LA N G
Sbjct: 59 VLSVPVTYTSMAEGDIDVFLGNWMPTMEGDIASYRDAGTVDTVRANLEGAKYTLATNAAG 118
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN--NNKFSLKGFRLIEASELA 178
ALGI S+ +A + L KIYGIE GN+GN+ I+DMI ++E+SE
Sbjct: 119 AALGITSFDALAANAEALEGKIYGIEAGNDGNRLIIDMIESGAFGLDADAIEVVESSEAG 178
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF--GEASVYTVVRSDYLD 236
+Q+ R N P VFL WEPHP+N++ ++ YL GG++ G G A+V+T + Y+D
Sbjct: 179 MLAQVGRASDRNEPIVFLGWEPHPMNANYDMTYLSGGDDWFGPDLGGATVFTNTSAGYVD 238
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDG 296
CPN+ +LL+N++F++A+ENE+M ILN+ D ++ + D++ WL GVT DG
Sbjct: 239 TCPNVGKLLQNLEFTLAMENEIMGAILNDGTDPDEAATAWMQANMDVVTGWLDGVTHLDG 298
Query: 297 QDPSRQLERFM 307
+ + +
Sbjct: 299 SSATDAVTMAL 309
>gi|227821371|ref|YP_002825341.1| hypothetical amino acid ABC-transporter permease protein
[Sinorhizobium fredii NGR234]
gi|227340370|gb|ACP24588.1| hypothetical amino acid ABC-transporter permease protein
[Sinorhizobium fredii NGR234]
Length = 396
Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats.
Identities = 53/339 (15%), Positives = 103/339 (30%), Gaps = 39/339 (11%)
Query: 1 MYKILAV-CLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M K+LA CL + F + A A C V A+ W + IL E G +
Sbjct: 65 MKKLLATTCLAVGLFGLGSAASAQECGDVTIANMNWQSAEVLANVDKFILTEGYGCSAEL 124
Query: 60 KLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVN 117
+ P ++ DI W L + L+EG + + +L G +
Sbjct: 125 VVGDTVPTITSMIEKGEPDIAPEGWVDLLPDVVNRGLQEGKLVAASSSLPDGGVQGWWIP 184
Query: 118 DVGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
+K + + I+ G G + G
Sbjct: 185 KYIVDANPDIKTIDDVLKHKELFPDPEDPSKGAIFNGPQGWGGTVVTTQLYKAYGAEAAG 244
Query: 169 FRLIE-ASELASFSQIRRDQRNNIPAVFLSWEPHPI-------------------NSDLN 208
F L++ S I + V W P + N
Sbjct: 245 FTLVDTGSAAGLDGSIAKAYERKQGWVGYYWAPTALLGKYEMVKLDHGVPADPAEWKRCN 304
Query: 209 IHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQD 268
+ + + + +V T+V + D+ + LK + N++M + +N+
Sbjct: 305 TVADCPDPKKNDWPKDTVQTLVTKGFADRAGPVMEYLKTRAWQNDTVNKLMAWMTDNQAS 364
Query: 269 RQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ + L +PD+ W+ + + +++ +
Sbjct: 365 GEEGAKHFLEENPDIWTKWVS-------PEVAEKVKAAL 396
>gi|241896063|ref|ZP_04783359.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, membrane/binding protein
[Weissella paramesenteroides ATCC 33313]
gi|241870711|gb|EER74462.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, membrane/binding protein
[Weissella paramesenteroides ATCC 33313]
Length = 576
Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats.
Identities = 55/286 (19%), Positives = 115/286 (40%), Gaps = 9/286 (3%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
++A+ + + ++ ++ A T W A++ + + L + GYK + L
Sbjct: 300 VVALTMIGSGAVTAFTTANSQKETIKIATTPWDSEKASSNVLAQALRQH-GYKVELTSLD 358
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+ ++S+ N D+ + W P + + + ++ NL+GA L V
Sbjct: 359 NSIMWQSIANGQADVSVSAWLPMTHRAQYQKY-KSQLDMMGPNLKGATNGLTVPTYM--- 414
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
I+ + + G KI GIEPG + + I KG++L E+S A +
Sbjct: 415 --TDVNSISDLQDQAGKKITGIEPGAGITKLAKNTIKAYGLDKKGWKLSESSTGAMTVAL 472
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
+ + P + W+PH + ++ YL ++ G E ++YT+ R P+ +
Sbjct: 473 GKAIKEKKPIIVTGWQPHWMFQKYDLKYLKDPKKSMGSKE-NIYTMSRKGLKKDKPDAYK 531
Query: 244 LLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
L +S + +M + N + + ++ H + +W
Sbjct: 532 ALDKFHWSKDDMSSVMLDMS-NGKSPKEAANIWIKHHQSQVDSWFK 576
>gi|104784100|ref|YP_610598.1| glycine betaine/L-proline ABC transporter periplasmic binding
protein [Pseudomonas entomophila L48]
gi|95113087|emb|CAK17815.1| putative glycine betaine/L-proline ABC transporter, periplasmic
binding protein [Pseudomonas entomophila L48]
Length = 315
Score = 199 bits (505), Expect = 5e-49, Method: Composition-based stats.
Identities = 126/292 (43%), Positives = 184/292 (63%), Gaps = 6/292 (2%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNK-GIDIF 79
+ + C VRF+D GWTDI TTAMTSV+LE LGYKT+ +++VPVT++SL +D+F
Sbjct: 23 EPEQCQTVRFSDVGWTDITVTTAMTSVVLEA-LGYKTHTNMISVPVTYKSLAGGKDLDVF 81
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
+G W P++E I Y + G+++ V NL+ AKY LAV + G+K + DI K+K LG
Sbjct: 82 LGNWMPTMENDIKQYRDAGTVETVRANLENAKYTLAVPQALYDKGLKDFADIVKFKDALG 141
Query: 140 AKIYGIEPGNEGNQRILDMINNNKFSLK--GFRLIEASELASFSQIRRDQRNNIPAVFLS 197
KIYGIEPGN+GN+ I MI+ + F LK GF+L+++SE SQ+ R Q+ VFL
Sbjct: 142 GKIYGIEPGNDGNRTIQSMIDKDAFGLKSAGFKLVQSSEAGMLSQVDRSQKRGEAVVFLG 201
Query: 198 WEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
WEPHP+N + YL GG+E FG+A+V T R Y +C N+ +LLKN+ F++ +E
Sbjct: 202 WEPHPMNKRFAMKYLTGGDEYFGPDFGKATVLTNTRKGYAQECSNVGQLLKNLSFTLDME 261
Query: 256 NEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+E+M +L++K + L+ +P +L WL GVTT DG+ + +
Sbjct: 262 SELMGNVLDDKMKADAAAKAWLKKNPQVLDTWLAGVTTVDGKPGLEAAKAKL 313
>gi|120602006|ref|YP_966406.1| glycine/betaine ABC transporter substrate-binding protein
[Desulfovibrio vulgaris DP4]
gi|120562235|gb|ABM27979.1| Substrate-binding region of ABC-type glycine betaine transport
system [Desulfovibrio vulgaris DP4]
Length = 285
Score = 198 bits (504), Expect = 6e-49, Method: Composition-based stats.
Identities = 63/291 (21%), Positives = 108/291 (37%), Gaps = 9/291 (3%)
Query: 1 MYKILAVCLFLTTFSISYARDAD-SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M KI+ + + A+ A PVR A W AT+ + +E+ L K +
Sbjct: 1 MKKIILLAVAFLLAFTGAAQAASKDAKPVRIAYVEWDCARATSNLVKAAIEDRLHRKVEL 60
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
++ + ++ + +D + W P L EG ++ + + GA+ AV D
Sbjct: 61 LPVSAGAMWMAVASGDVDATVTAWLPVTHGDYLKRL-EGKVRDLGPLVGGARLGWAVPDY 119
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+ S ++ G +I GI+PG + D I +L+E S
Sbjct: 120 V---TVNSIAELDAAADRFGGRIIGIDPGAGLMRMSEDAIKAYGLKKM--QLVEGSGATM 174
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+ + R V +W PH + + YL + G G S++TVVR P
Sbjct: 175 TAALADAIRRKEWIVVTAWSPHWMFGRWQLKYLDDPKGALG-GMESIHTVVRKGLDKDMP 233
Query: 240 NISRLLKNIKF-SVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+ L + A +M D R ++ HP L+ +WL
Sbjct: 234 EVFAFLDRFAYADTAQLQTLMAWNNEEGADPLTNARRFMKEHPALVDSWLA 284
>gi|46580702|ref|YP_011510.1| glycine/betaine/L-proline ABC transporter periplasmic-binding
protein [Desulfovibrio vulgaris str. Hildenborough]
gi|46450121|gb|AAS96770.1| glycine/betaine/L-proline ABC transporter, periplasmic-binding
protein [Desulfovibrio vulgaris str. Hildenborough]
gi|311234421|gb|ADP87275.1| Substrate-binding region of ABC-type glycine betaine transport
system [Desulfovibrio vulgaris RCH1]
Length = 285
Score = 198 bits (504), Expect = 7e-49, Method: Composition-based stats.
Identities = 63/291 (21%), Positives = 108/291 (37%), Gaps = 9/291 (3%)
Query: 1 MYKILAVCLFLTTFSISYARDAD-SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M KI+ + + A+ A PVR A W AT+ + +E+ L K +
Sbjct: 1 MKKIILLAVAFLLAFTGAAQAASKDAKPVRIAYVEWDCARATSNLVKAAIEDRLHRKVEL 60
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
++ + ++ + +D + W P L EG ++ + + GA+ AV D
Sbjct: 61 LPVSAGAMWMAVASGDVDATVTAWLPVTHGDYLKRL-EGKVRDLGPLVDGARLGWAVPDY 119
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+ S ++ G +I GI+PG + D I +L+E S
Sbjct: 120 V---TVNSIAELDAAADRFGGRIIGIDPGAGLMRMSEDAIKAYGLKKM--QLVEGSGATM 174
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+ + R V +W PH + + YL + G G S++TVVR P
Sbjct: 175 TAALADAIRRKEWIVVTAWSPHWMFGRWQLKYLDDPKGALG-GMESIHTVVRKGLDKDMP 233
Query: 240 NISRLLKNIKF-SVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+ L + A +M D R ++ HP L+ +WL
Sbjct: 234 EVFAFLDRFAYADTAQLQTLMAWNNEEGADPLTNARRFMKEHPALVDSWLA 284
>gi|332968036|gb|EGK07123.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Desmospora sp. 8437]
Length = 286
Score = 198 bits (504), Expect = 7e-49, Method: Composition-based stats.
Identities = 55/286 (19%), Positives = 113/286 (39%), Gaps = 10/286 (3%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
+ ++ L T + + + + A W A+T + +LE+ G+K +K +
Sbjct: 11 LFSMFALLFTVACGQQQGGEGKKEITLAYVSWDSEMASTHVIQKVLEDQ-GFKVELKQVE 69
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+ + + D + W P K + ++ + NL+G + L V
Sbjct: 70 AGPMWAGVASGSADGMVAAWLPLTHKSYYEK-FKNQVEDLGPNLEGTRIGLVVPSYV--- 125
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
+ S D+ + K E KI GI+ G + I + K L+E S+ A + +
Sbjct: 126 DVDSIADLNQKKSEFDGKIIGIDAGAGVMEATHRAIKDYKLD---MTLVEGSDAAMVASL 182
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
++ P V W PH + ++ +L ++ G G+ +++T+V D + P +
Sbjct: 183 KKAIDAKKPIVITGWSPHWKFAKYDLKFLDDPKKSFG-GKENIHTIVGKDLKKESPEAYK 241
Query: 244 LLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+L ++ E+M I + + ++ H D +K W
Sbjct: 242 ILDRFHWTTEDMEEVMLAI-QKGKKPEEAAADWVKKHSDKVKEWTK 286
>gi|150402038|ref|YP_001329332.1| glycine betaine ABC transporter substrate-binding protein
[Methanococcus maripaludis C7]
gi|150033068|gb|ABR65181.1| Substrate-binding region of ABC-type glycine betaine transport
system [Methanococcus maripaludis C7]
Length = 295
Score = 198 bits (504), Expect = 7e-49, Method: Composition-based stats.
Identities = 66/297 (22%), Positives = 120/297 (40%), Gaps = 13/297 (4%)
Query: 1 MY--KILAVCLFLTTFSISYARDADS------CTPVRFADTGWTDIAATTAMTSVILEEI 52
M + A+ + S + ++F W + + + VILEE
Sbjct: 1 MKYGTLFAIAILGLAVMFSGCVQSSQVVEDTQKGTIKFGLPPWPGVTVKSNVVKVILEEQ 60
Query: 53 LGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKY 112
GY + L +T+ L + +DI + W P+ + E +++V N+
Sbjct: 61 -GYDVELNQLDAGITYAKLADGELDILLAGWLPTTHQDYWEQYGE-QLEMVHVNVGKTAL 118
Query: 113 MLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
LAV + GI+S D+ ++ +I GIEPG I G+ L
Sbjct: 119 GLAVPTYTYEAGIQSITDLNGNEELFDGRIVGIEPGAGIMSNTEKAITLYGLE--GYELQ 176
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRS 232
+S A +++ R N + WEPH + NI L E++ G G+ VYT+ R+
Sbjct: 177 SSSTPAMMAELARAMNENENIIVTVWEPHSVFFKFNITMLDDPEKVYGDGD-KVYTIARN 235
Query: 233 DYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
D+ D P + L+ + ++++E + + D + V + +P+L+ W
Sbjct: 236 DFKDDFPEVYEFLQKFEVDPSVQSEWIYKYSDEGMDPEEVAEEWVANNPELVAEWTS 292
>gi|258405972|ref|YP_003198714.1| Substrate-binding region of ABC-type glycine betaine transport
system [Desulfohalobium retbaense DSM 5692]
gi|257798199|gb|ACV69136.1| Substrate-binding region of ABC-type glycine betaine transport
system [Desulfohalobium retbaense DSM 5692]
Length = 308
Score = 198 bits (503), Expect = 9e-49, Method: Composition-based stats.
Identities = 68/309 (22%), Positives = 131/309 (42%), Gaps = 2/309 (0%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K + L + A +R W + T + + ILE +GY+T
Sbjct: 1 MKKTFLLISLLCLTLLFPAAAFAQKDTIRLGVPPWPGVTVKTEVATQILEA-MGYETQQL 59
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ P+ ++ L ID ++ W P P E+G+I ++ NL A AV
Sbjct: 60 EIGPPIIYKGLTTGEIDAYLAAWLPQQTDMFEPLKEKGAIDVININLDDAMTGFAVPTYV 119
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ GI S D+A + + ++ IE G+ + +M+ N+ SL + L ++ A
Sbjct: 120 WEAGIHSVADLAPNADKFDSTLHTIEVGSGMHTTTEEMVKNDVASLGDWELASSTTPAML 179
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPG-GEEISGFGEASVYTVVRSDYLDKCP 239
+++ ++ VF +W+PH + +++ +L G E+ VY V D+ ++ P
Sbjct: 180 TEVNEKTKSKEWVVFHAWKPHWMTIKIDMKFLEGVPGSEDLISESVVYNVASPDFQERFP 239
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDP 299
+ L+ S ++ + K+D + V R + + + + WL GV T DG+
Sbjct: 240 QARKFLEKFYVSGDTQSAWIHSFSYEKKDPEDVAREWIANNMETVSQWLDGVETTDGRPA 299
Query: 300 SRQLERFMN 308
++ +
Sbjct: 300 IDAVKNAVK 308
>gi|260173415|ref|ZP_05759827.1| glycine betaine-binding protein precursor [Bacteroides sp. D2]
gi|315921687|ref|ZP_07917927.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|313695562|gb|EFS32397.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 290
Score = 198 bits (502), Expect = 1e-48, Method: Composition-based stats.
Identities = 57/288 (19%), Positives = 117/288 (40%), Gaps = 8/288 (2%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+YKI+ + L S A ++ A W + A + + V+LEE GY+ ++
Sbjct: 5 IYKIVGIVLSAMLLLASCAHSDLEKKKIKIAYANWLEGIAMSHLAKVVLEEH-GYEVELQ 63
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ F S+ K D+F+ W P K + I+ + E + A+ L V +
Sbjct: 64 NADLAPIFVSMARKKSDVFLDAWLPITMKDYMDQYGDS-IEFLGEVYEEARIGLVVPEYV 122
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
I+S ++A +K ++I GI+ G + I G+ L+ +S
Sbjct: 123 ---TIQSISELADHKDRFSSEIVGIDAGAGIMKTTDKAITAYGLD--GYALMTSSSSTML 177
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ +++ V W PH + ++ +L +++ G ++ + + +K P
Sbjct: 178 ASLKKAMDKGEWVVITGWTPHWMFDQFDLKFLDDPKKVYGD-LEEIHAIAWKGFSEKDPF 236
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+ NIK + + M + + + D + + R H L+ +W+
Sbjct: 237 AAEFFGNIKLTTEELSSFMTAMKDARMDEEEIARKWRDEHRQLVDSWI 284
>gi|225181345|ref|ZP_03734789.1| Substrate-binding region of ABC-type glycine betaine transport
system [Dethiobacter alkaliphilus AHT 1]
gi|225167926|gb|EEG76733.1| Substrate-binding region of ABC-type glycine betaine transport
system [Dethiobacter alkaliphilus AHT 1]
Length = 283
Score = 198 bits (502), Expect = 1e-48, Method: Composition-based stats.
Identities = 60/285 (21%), Positives = 111/285 (38%), Gaps = 9/285 (3%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL 62
K+L + + + V W A+T + + +LE+ LGY + L
Sbjct: 6 KVLLGVVLVAAMLFAVTGCGTDDQSVTLGYVEWDSEIASTNVVATVLED-LGYDVELMSL 64
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
+ V + SL D + W P+ +E+ + + NL G + L V +
Sbjct: 65 SPAVMYTSLGEGDYDGMVAAWLPTTHGDYFAEIEDS-VVDLGANLVGTRIGLVVPEYV-- 121
Query: 123 LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
I S +++ + +I GIEPG Q ++ L++ S +
Sbjct: 122 -DIDSIEELNENADMFDGQIVGIEPGAGLQQATEVVVEEYGLD--NIELLQGSGATMAAS 178
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ +N P V W PH + ++ YL I G G+ V+T+VR + + P +
Sbjct: 179 LAEAVEHNEPIVVTGWTPHWKFARWDLKYLEDPLNIYG-GDEYVHTLVRQNLEEDMPEVY 237
Query: 243 RLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
+L N ++ +E+M LI + + R + + D + W
Sbjct: 238 SVLDNFNWTPDDMSEVMVLI-EDGMNPAEAARQWVDENQDKVSEW 281
>gi|258404481|ref|YP_003197223.1| Substrate-binding region of ABC-type glycine betaine transport
system [Desulfohalobium retbaense DSM 5692]
gi|257796708|gb|ACV67645.1| Substrate-binding region of ABC-type glycine betaine transport
system [Desulfohalobium retbaense DSM 5692]
Length = 313
Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats.
Identities = 70/310 (22%), Positives = 142/310 (45%), Gaps = 9/310 (2%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL 62
+IL L + ++ A + PV+F W + + + S ++ +GY+ +
Sbjct: 9 RILFTVLVFSLLAL----PAMASGPVKFGVPSWPGVTVKSEVASQLI-RAMGYEVEQTVA 63
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
+ + F+++ ++ ++G W P + I P +E+G I V N++ A L V
Sbjct: 64 SPSIIFKAMTLGELNAYLGGWSPVEDPMIDPLVEKGEIIRVGANIEEAVTALVVPSFVAE 123
Query: 123 LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
G+ S +D+A +K + + IYGIE G+ N I + I+ N L + L +S + +Q
Sbjct: 124 AGVTSIEDLAAHKDKFESTIYGIESGSGANNDIQEAIDANAAGLGDWELAASSTASMLAQ 183
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF---GEASVYTVVRSDYLDKCP 239
++ N AVF WEPH +N+ +++HYL + + VYT+ +D + P
Sbjct: 184 VQSLSENKRWAVFWGWEPHWMNAVMDLHYLQSETPATEKIGASVSVVYTITSNDLPEANP 243
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPD-LLKNWLIGVTTFDGQD 298
L+ +K ++++ + ++ + + ++ + D L+ WL GV +G+
Sbjct: 244 QAYAFLEQLKVPSDVQSQWIYEYRQQDKEPEDLAPQWIKANLDGLVGQWLEGVRAANGEP 303
Query: 299 PSRQLERFMN 308
+ +
Sbjct: 304 ALKVVRAAFK 313
>gi|150398813|ref|YP_001322580.1| glycine betaine ABC transporter substrate-binding protein
[Methanococcus vannielii SB]
gi|150011516|gb|ABR53968.1| Substrate-binding region of ABC-type glycine betaine transport
system [Methanococcus vannielii SB]
Length = 294
Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats.
Identities = 59/289 (20%), Positives = 112/289 (38%), Gaps = 5/289 (1%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M IL++ L + + + + W + + + VILEE GY +
Sbjct: 8 MIPILSLALLFSGCLNASENNDSEQKSLNLGLPPWPGVTVKSNVVKVILEEK-GYAVKLN 66
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
L + + L +D+ + W P+ + + + V N++ LAV
Sbjct: 67 SLDAGLVYAKLAEGELDVLLAGWLPATHENYWNQYGD-QLDKVNVNVEKTALGLAVPRHT 125
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ GI+S D+ K ++I GIEPG + I + L +S A
Sbjct: 126 YESGIQSITDLKGNGKIFNSRIVGIEPGAGIMSNTENAIEIYGLE--NYELKSSSTPAMM 183
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+++ R N + WEPH + +I L E + G G+ VYT+ R P
Sbjct: 184 AELERAFNRNENIIVTVWEPHSVFFRFDIVMLDDPERVYGDGD-KVYTIARKGLESDDPV 242
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+ K K + +++ + + ++ + V R +R + +++ W
Sbjct: 243 LYEFFKKFKITPEIQSGWIYEYSDEGRNPEDVAREWVRNNSEIVSEWTS 291
>gi|332974746|gb|EGK11662.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Desmospora sp. 8437]
Length = 569
Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats.
Identities = 53/277 (19%), Positives = 110/277 (39%), Gaps = 10/277 (3%)
Query: 11 LTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRS 70
+ + V W A+T + +LE+ G++ ++ + V F
Sbjct: 301 SVGVTTLFTSQDTGKERVTLTYVNWDSEVASTHVLKKVLEDQ-GFQVKLQEVDVGPMFAG 359
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD 130
+ + D + W P + +G ++ + NL+G + L V A S D
Sbjct: 360 VASGDADGTVAAWLPVQHRNYMEKY-KGQVEDLGPNLKGTRLGLVVPRYVKAN---SVYD 415
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
+ K + +I GIE G N++ +I + L+E+S A S + + +
Sbjct: 416 LKKDAAQFDHQIIGIEAGANMNKQTEKLIKDYDLD---MELVESSSAAMASTLAKAVKEK 472
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKF 250
P V W+PH + + +L ++ G E ++T+V D +K P +++ +
Sbjct: 473 KPIVVTGWQPHWKFARFQLKFLDDPKKEFGQSE-EIHTIVSKDLKEKNPEAYQIMDRFHW 531
Query: 251 SVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
+ E+M L++ ++ + + + D +K W
Sbjct: 532 TPGDMEEVM-LMIQEGKEPEQAAAAWVEKNKDKVKKW 567
>gi|188586663|ref|YP_001918208.1| Substrate-binding region of ABC-type glycine betaine transport
system [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179351350|gb|ACB85620.1| Substrate-binding region of ABC-type glycine betaine transport
system [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 314
Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats.
Identities = 81/306 (26%), Positives = 138/306 (45%), Gaps = 3/306 (0%)
Query: 2 YKILAVCLFLTTFSISY-ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
K+L V + +T + A + V A WT + + +LE LGY N+K
Sbjct: 9 RKVLIVAMLITGIIFAGIATGCEEERDVELAMVEWTCSTQKSHINEAVLET-LGYDVNVK 67
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+PV + + ID F W+ + + LEEG + + +L Y AV
Sbjct: 68 TYNLPVILEGMADGQIDAFTDAWFQTWGTPLENALEEGDVVHLETHLDETNYAPAVPTYV 127
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ G+ S +D+A + ++ YG+EPGN+GN+ +++ N+ + L + ++E++E A
Sbjct: 128 YEEGVTSLEDLADHSEKFEYTYYGLEPGNDGNEIMIEAFENDTYGLGEWDIMESNEAAMI 187
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ + + N VF WEPH +N ++ YL + I G GE V T+ R D P
Sbjct: 188 ADVEQKIENEEWVVFSGWEPHYMNVIFDMEYLDDPKGIWGEGE-QVGTIARPGLEDDNPQ 246
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPS 300
+++ LK V +E + +D V + + D + W+ G+ T DGQD
Sbjct: 247 LAQYLKQFDVDVDTVDEWVYEYGYEDRDPDEVADEWISENLDKVLEWVDGLETVDGQDAQ 306
Query: 301 RQLERF 306
L
Sbjct: 307 EALREA 312
>gi|297623963|ref|YP_003705397.1| glycine betaine ABC transporter substrate-binding protein [Truepera
radiovictrix DSM 17093]
gi|297165143|gb|ADI14854.1| Substrate-binding region of ABC-type glycine betaine transport
system [Truepera radiovictrix DSM 17093]
Length = 304
Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats.
Identities = 92/293 (31%), Positives = 150/293 (51%), Gaps = 8/293 (2%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M + + L +++ A++ V F W + T + + ++E LGY+T +
Sbjct: 1 MKRAVLGLLAALSWTSGAAQE------VAFGYVEWPEAVVKTHVVASVVEA-LGYETTMH 53
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
L++P+ FR + +D+F+ W PS+E I PYLEEG++ + A NL+G Y AV
Sbjct: 54 SLSLPLVFRGVATGDLDVFVEVWLPSMESMITPYLEEGTVTMSARNLEGTLYRSAVPTYV 113
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ G+ S D+A + G + YGIEPGN+GN+ + I + + L G++L+E+SE
Sbjct: 114 YEAGVTSLADLAAHAGAFGRRYYGIEPGNDGNEIMRRAIETDTYGLSGWQLVESSEQGML 173
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ R VF W PH +N+ +I YL E+I G GE V TV + +L++ PN
Sbjct: 174 QMVERATSRGDWIVFSGWRPHWMNNAFDIAYLDDPEDIWG-GEGFVATVANTRFLEENPN 232
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
++RLL + S+ + + +D V RT L + + W GVTT
Sbjct: 233 LARLLAQFRISLEDQGAWIDGYGRQNRDPAEVARTWLEANLQTVTRWAEGVTT 285
>gi|92112670|ref|YP_572598.1| substrate-binding region of ABC-type glycine betaine transport
system [Chromohalobacter salexigens DSM 3043]
gi|91795760|gb|ABE57899.1| Substrate-binding region of ABC-type glycine betaine transport
system [Chromohalobacter salexigens DSM 3043]
Length = 312
Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats.
Identities = 72/289 (24%), Positives = 132/289 (45%), Gaps = 5/289 (1%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGY 82
D T V F W + T + + IL LGY + L+ V +++L+ D+F+
Sbjct: 25 DEATQVSFVAPPWPGVTVKTEIMAQIL-APLGYTNERQELSSTVGYKTLQTGDSDVFLAG 83
Query: 83 WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAK--YKKELGA 140
W P+ + +++G+I + N+ GA+ AV F G+ S + + ++
Sbjct: 84 WLPAQQDSYDAAMDDGTIVDLGNNVTGARMGFAVPGYVFDAGVTSAEQLDDPENRERFEG 143
Query: 141 KIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEP 200
+ Y IE G+ + I D N+ + L + L+E+S S +R F W P
Sbjct: 144 RYYSIESGSTVSDFINDAKRNDTYGLGDWELLESSTPGMLSAVRSAYDEKRWVAFYGWTP 203
Query: 201 HPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEM 258
H + + ++H L E I G + V T+V + + PN+ RLL + +++
Sbjct: 204 HWMVPEFDMHILDDPEGIYGENQGRSDVRTIVAKSFSEANPNLMRLLDQFVLTAEQQSDF 263
Query: 259 MKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
++ +++ + V R L+ HPD L ++L GVTT DG+ ++ +
Sbjct: 264 IREYGLEERELETVAREWLQAHPDELADFLEGVTTRDGEPGLAAVKASL 312
>gi|92114575|ref|YP_574503.1| substrate-binding region of ABC-type glycine betaine transport
system [Chromohalobacter salexigens DSM 3043]
gi|91797665|gb|ABE59804.1| Substrate-binding region of ABC-type glycine betaine transport
system [Chromohalobacter salexigens DSM 3043]
Length = 319
Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats.
Identities = 88/294 (29%), Positives = 151/294 (51%), Gaps = 3/294 (1%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
+L + + A+ VRF W + + +L + LGY+T+++ +
Sbjct: 18 LLGGAMGALLLAPFGLAQAED-DMVRFGTPQWPGATVKSEVARQLL-DTLGYRTSLREAS 75
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+ + + +D+ M W PS + P L G + V +N+ GA++ LAV + +
Sbjct: 76 SSIILEGMASGDLDVNMALWRPSQSGMLEPRLAAGELVEVVKNIDGARFQLAVPEYVWDA 135
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
G+ S D+A++ + G YGIEPGN GN+ + + I++ + L +R+ +SE SQ+
Sbjct: 136 GVHSMADLAEHAERFGRTFYGIEPGNVGNELMQNAIDDGTYGLDDWRVAASSETGMMSQV 195
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
D RN FL WEPH +N D +I YL E + G +SV TVV SD+ ++ PN+
Sbjct: 196 ESDIRNEQWVAFLGWEPHWMNVDFDIRYLEDPENLWGD-ASSVSTVVASDFAERHPNVIA 254
Query: 244 LLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQ 297
L N+ +A++++ + Q + V T +++HP+ + WL GVTT DG+
Sbjct: 255 FLDNMVVPIAVQDQWVYAYSREDQPLEAVAATWIQSHPERVNAWLEGVTTADGE 308
>gi|255693779|ref|ZP_05417454.1| glycine betaine/proline ABC transporter, permease/substrate-binding
protein [Bacteroides finegoldii DSM 17565]
gi|260620402|gb|EEX43273.1| glycine betaine/proline ABC transporter, permease/substrate-binding
protein [Bacteroides finegoldii DSM 17565]
Length = 292
Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats.
Identities = 59/288 (20%), Positives = 115/288 (39%), Gaps = 8/288 (2%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+YK++ + L S A V+ A W + A + + V+LEE GY+ ++
Sbjct: 3 IYKLVGIVLTALLLLASCADSDPDKKKVKIAYANWLEGIAMSHLAKVVLEEQ-GYEVELQ 61
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ F S+ K D+F+ W P K + I+ + E A+ LAV
Sbjct: 62 NADLAPIFVSISGKNSDVFLDAWLPITMKDYMDQYGDS-IEFLGEVYGEARVGLAVPQYV 120
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
I S ++A K ++I GI+ G + I+ F G+ L+ +S
Sbjct: 121 A---INSIDELAANKDRFSSEIVGIDAGAGIMKTTDKAISTYGFD--GYTLMTSSSSTML 175
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ +++ V W PH + ++ +L +++ G ++ + + K P
Sbjct: 176 ASLKKAMDRGEWIVITGWTPHWMFDQFDLKFLDDPKKVYGD-LEEIHAIAWKGFSKKDPF 234
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+ NIK + + M + + + D + + R H L+ +W+
Sbjct: 235 AAEFFANIKLTTEELSSFMTAMKDARMDEEEIARKWRDEHRQLVDSWI 282
>gi|161619520|ref|YP_001593407.1| substrate-binding region of ABC-type glycine betaine transport
system [Brucella canis ATCC 23365]
gi|260565931|ref|ZP_05836401.1| ABC-type proline/glycine betaine transport system protein [Brucella
suis bv. 4 str. 40]
gi|161336331|gb|ABX62636.1| Substrate-binding region of ABC-type glycine betaine transport
system [Brucella canis ATCC 23365]
gi|260155449|gb|EEW90529.1| ABC-type proline/glycine betaine transport system protein [Brucella
suis bv. 4 str. 40]
Length = 248
Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats.
Identities = 108/246 (43%), Positives = 157/246 (63%), Gaps = 2/246 (0%)
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+PVT+ SL K ID+F+GYW PS+ + PYL+ +++ + NL GAKY LAV F
Sbjct: 1 MPVTYASLAKKDIDVFLGYWNPSMSADLQPYLDNKTVETLRTNLTGAKYTLAVPQFVFDE 60
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
G+K ++DIAK+K +LG KIYGIEPGN+GN+ IL MIN N F LK F L E+SE +Q+
Sbjct: 61 GLKDFKDIAKFKDKLGGKIYGIEPGNDGNRLILSMINKNAFGLKSFELAESSEQGMLAQV 120
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF--GEASVYTVVRSDYLDKCPNI 241
R ++ P VFL+WEPHP+N I YL GG++ G G A V T VR+ Y +CPN+
Sbjct: 121 ARSIKSKEPIVFLAWEPHPMNKRFKIAYLTGGDDFFGPNLGGAKVETNVRTGYTQECPNV 180
Query: 242 SRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSR 301
+ L N++F++ +EN++M IL++ ++ L+ +P +L WL GVTT DG++
Sbjct: 181 GKFLTNLEFNLDIENDIMGKILDDGEEPAKAATEWLKANPGVLNQWLAGVTTVDGKEGLP 240
Query: 302 QLERFM 307
+ +
Sbjct: 241 AVRSAL 246
>gi|71902822|ref|YP_279625.1| glycine betaine transport system permease protein [Streptococcus
pyogenes MGAS6180]
gi|71801917|gb|AAX71270.1| glycine betaine-binding protein [Streptococcus pyogenes MGAS6180]
Length = 575
Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats.
Identities = 55/286 (19%), Positives = 103/286 (36%), Gaps = 10/286 (3%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
+ + + AD V A W A+T + + +L+ GY + L
Sbjct: 300 VFLIAALGRGIMAMTSGMADKGETVNIAYVQWDSEVASTHVIAEVLKNE-GYHVTLTPLD 358
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
V ++++ N D W P + + + NL+G K LAV
Sbjct: 359 NAVMWQTVANGNADFSTSAWLPVTHGQQYQKY-KSKLDDLGPNLKGTKLGLAVPKYM--- 414
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
I K+ KI GIEPG + +L + L+ AS A + +
Sbjct: 415 --TDVNSIEDLSKQADQKITGIEPGAGIMAAAQKTLKEYH-NLSSWELVAASTGAMTTSL 471
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
+ + P V +W PH + + ++ YL +E G E ++ T+ R PN+ +
Sbjct: 472 DQAIKKKDPIVVTAWSPHWMFAKYDLKYLKDPKETFGSTE-NINTIARKGLKKDLPNVYK 530
Query: 244 LLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
++ ++ +M I N + + + + + +W
Sbjct: 531 IIDKFHWTQKDMEAVMLDI-NKGMSPEAAAKKWVEANQSKVSSWTK 575
>gi|78355193|ref|YP_386642.1| putative glycine betaine/L-proline ABC transporter solute-binding
protein [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
gi|78217598|gb|ABB36947.1| putative glycine betaine/L-proline ABC transporter, solute-binding
protein [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
Length = 306
Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats.
Identities = 68/309 (22%), Positives = 129/309 (41%), Gaps = 4/309 (1%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K L + L + + VRF W + T + + I+E +GY T
Sbjct: 1 MRKSLLYIVLLACCVVLPLQ--AQADTVRFGVPPWPGVTVKTEVLAQIIEA-MGYDTEQL 57
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ + + L +D+++ W P + P E+ ++ +V NL A LAV
Sbjct: 58 EVGPAIVYNGLTTGDVDVYVASWIPLQNEMFRPLKEKNAVDIVGVNLDEAGVSLAVPTYV 117
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ G++S D+ KY + IY IE G+ ++ N+ L ++++ + A
Sbjct: 118 WEAGVRSIADLDKYADKFDHTIYSIEVGSGMQVSTEQIVKNDVAGLGDWKMLCSPVPAMI 177
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPG-GEEISGFGEASVYTVVRSDYLDKCP 239
++ R VF W+PH + +++ +L G +++VYT+ D+ D+ P
Sbjct: 178 RAVQDKVRAGEWVVFHGWQPHWMIYQMDMKFLEGVPGTEGLVNKSTVYTLASLDFRDRFP 237
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDP 299
+ + L N+ A ++E + K+ V R + + D ++ WL GV DG
Sbjct: 238 QVHKFLANLYIKGATQSEWINEYGFKKRKPADVARDWIGANLDTVETWLKGVNAADGTPG 297
Query: 300 SRQLERFMN 308
+ +
Sbjct: 298 IDAVRAAFS 306
>gi|92114024|ref|YP_573952.1| substrate-binding region of ABC-type glycine betaine transport
system [Chromohalobacter salexigens DSM 3043]
gi|91797114|gb|ABE59253.1| Substrate-binding region of ABC-type glycine betaine transport
system [Chromohalobacter salexigens DSM 3043]
Length = 294
Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats.
Identities = 57/282 (20%), Positives = 105/282 (37%), Gaps = 7/282 (2%)
Query: 9 LFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTF 68
+ A+ DS + A W+ A+T + +LEE GY + L+ +
Sbjct: 18 AAGAGLNAGIAQAQDSKGDITLAYVEWSSEVASTNVVRAVLEEQ-GYNVEMSSLSAAAMW 76
Query: 69 RSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSY 128
+++ D + W PS + + + ++ + NL G K L V I S
Sbjct: 77 QAVAYGDADGMVAAWLPSTHEQYLNEVGD-KVEDLGANLNGTKLGLVVPSYT---DISSI 132
Query: 129 QDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQR 188
++ + +I GI+PG I L S + + +
Sbjct: 133 DELDDKADMVNDEIVGIDPGAGLMNLTEKAIEEYDLGD-EINLQSGSGATMTAALDSAIK 191
Query: 189 NNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI 248
N+ V W PH + + ++ YL + + G G + TVVR + P +L N
Sbjct: 192 NDEDIVVAGWTPHWMFARWDLKYLEDPKNVYG-GAEHINTVVRQGLKEDMPEAYAILDNF 250
Query: 249 KFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIG 290
+++ E+M + D + + HPD++ W+ G
Sbjct: 251 EWTPEQMGEVMLMNQEEGSDPYENAKKWVENHPDVVAEWVNG 292
>gi|251783394|ref|YP_002997699.1| glycine betaine-binding protein/glycinebetaine transport system
permease [Streptococcus dysgalactiae subsp. equisimilis
GGS_124]
gi|242392026|dbj|BAH82485.1| glycine betaine-binding protein/glycinebetaine transport system
permease protein [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
Length = 575
Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats.
Identities = 53/286 (18%), Positives = 105/286 (36%), Gaps = 10/286 (3%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
+ + + AD V A W A+T + + +L++ GY + L
Sbjct: 300 VFLIAALGRGIMAMTSGMADKGETVNIAYVQWDSEVASTHVIAEVLKKE-GYHVTLTPLD 358
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
V ++++ N D W P + + + NL+G K LAV
Sbjct: 359 NAVMWQTVANGNADFSTSAWLPVTHGQQYQKY-KSKLDDLGPNLKGTKLGLAVPTYM--- 414
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
I + +I GIEPG + + + +L + L+ AS A + +
Sbjct: 415 --TDVNSIEDLTSQADQRITGIEPGAGIMTAAKNALKDYD-NLSSWELVAASTGAMTTSL 471
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
+ + P V +W PH + + ++ YL +E G E ++ T+ R PN+ +
Sbjct: 472 DQAIKKKDPIVVTAWSPHWMFAKYDLKYLKDSKETFGSAE-NINTIARKGLKKDLPNVYK 530
Query: 244 LLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
++ ++ +M I N + + + + + +W
Sbjct: 531 IIDKFHWTQKDMEAVMLDI-NKGMSPEAAAKKWVEANQSKVSSWTK 575
>gi|71909972|ref|YP_281522.1| glycine betaine-binding protein/glycine betaine transporter
permease [Streptococcus pyogenes MGAS5005]
gi|71852754|gb|AAZ50777.1| glycine betaine-binding protein/glycine betaine transport system
permease protein [Streptococcus pyogenes MGAS5005]
Length = 575
Score = 196 bits (497), Expect = 4e-48, Method: Composition-based stats.
Identities = 55/286 (19%), Positives = 103/286 (36%), Gaps = 10/286 (3%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
+ + + AD V A W A+T + + +L+ GY + L
Sbjct: 300 VFLIAALGRGIMTMASGMADKGETVNIAYVQWDSEVASTHVIAEVLKNE-GYHVTLTPLD 358
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
V ++++ N D W P + + + NL+G K LAV
Sbjct: 359 NAVMWQTVANGNADFSTSAWLPVTHGQQYQKY-KSKLDDLGPNLKGTKLGLAVPKYM--- 414
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
I K+ KI GIEPG + +L + L+ AS A + +
Sbjct: 415 --TDVNSIEDLSKQADQKITGIEPGAGIMAAAKKTLKEYH-NLSSWELVAASTGAMTTSL 471
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
+ + P V +W PH + + ++ YL +E G E ++ T+ R PN+ +
Sbjct: 472 DQAIKKKDPIVVTAWSPHWMFAKYDLKYLKDPKETFGSTE-NINTIARKGLKKDLPNVYK 530
Query: 244 LLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
++ ++ +M I N + + + + + +W
Sbjct: 531 IIDKFHWTQKDMEAVMLDI-NKGMSPEAAAKKWVEANKSKVSSWTK 575
>gi|19745348|ref|NP_606484.1| glycine-betaine binding permease protein [Streptococcus pyogenes
MGAS8232]
gi|19747452|gb|AAL96983.1| putative glycine-betaine binding permease protein [Streptococcus
pyogenes MGAS8232]
Length = 575
Score = 196 bits (497), Expect = 4e-48, Method: Composition-based stats.
Identities = 55/286 (19%), Positives = 104/286 (36%), Gaps = 10/286 (3%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
+ + + AD V A W A+T + + +L+ GY + L
Sbjct: 300 VFLIAALGRGIMTMASGMADKGETVNIAYVQWDSEVASTHVIAEVLKNE-GYHVTLTPLD 358
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
V ++++ N D W P + + + NL+G K LAV
Sbjct: 359 NAVMWQTVANGNADFSTSAWLPVTHGQQYQKY-KSKLDDLGPNLKGTKLGLAVPKYM--- 414
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
I K+ KI GIEPG + +L + L+ AS A + +
Sbjct: 415 --TDVNSIEDLSKQADQKITGIEPGAGIMAAAKKTLKEYH-NLSSWELVAASTGAMTTSL 471
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
+ + P V +W PH + + ++ YL +E G E ++ T+ R + PN+ +
Sbjct: 472 DQAIKKKDPIVVTAWSPHWMFAKYDLKYLKDPKETFGSTE-NINTIARKGLKKELPNVYK 530
Query: 244 LLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
++ ++ +M I N + + + + + +W
Sbjct: 531 IIDKFHWTQKDMEAVMLDI-NKGMSPEAAAKKWVEANKSKVSSWTK 575
>gi|28895060|ref|NP_801410.1| glycine-betaine binding permease protein [Streptococcus pyogenes
SSI-1]
gi|28810305|dbj|BAC63243.1| putative glycine-betaine binding permease protein [Streptococcus
pyogenes SSI-1]
Length = 575
Score = 196 bits (497), Expect = 4e-48, Method: Composition-based stats.
Identities = 55/286 (19%), Positives = 103/286 (36%), Gaps = 10/286 (3%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
+ + + AD V A W A+T + + +L+ GY + L
Sbjct: 300 VFLIAALGRGIMAMTSGMADKGETVNIAYVQWDSEVASTHVIAEVLKNE-GYHVTLTPLD 358
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
V ++++ N D W P + + + NL+G K LAV
Sbjct: 359 NAVMWQTVANGNADFSTSAWLPVTHGQQYQKY-KSKLDDLGPNLKGTKLGLAVPKYM--- 414
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
I K+ KI GIEPG + +L + L+ AS A + +
Sbjct: 415 --TDVNSIEDLSKQADQKITGIEPGAGIMAAAKKTLKEYH-NLSSWELVAASTGAMTTSL 471
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
+ + P V +W PH + + ++ YL +E G E ++ T+ R PN+ +
Sbjct: 472 DQAIKKKDPIVVTAWSPHWMFAKYDLKYLKDPKETFGSTE-NINTIARKGLKKDLPNVYK 530
Query: 244 LLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
++ ++ +M I N + + + + + +W
Sbjct: 531 IIDKFHWTQKDMAAVMLDI-NKGMSPEAAAKKWVEANKSKVSSWTK 575
>gi|298480785|ref|ZP_06998981.1| glycine betaine/L-proline ABC transporter,periplasmic
substrate-binding protein [Bacteroides sp. D22]
gi|298273219|gb|EFI14784.1| glycine betaine/L-proline ABC transporter,periplasmic
substrate-binding protein [Bacteroides sp. D22]
Length = 288
Score = 196 bits (497), Expect = 4e-48, Method: Composition-based stats.
Identities = 56/288 (19%), Positives = 113/288 (39%), Gaps = 8/288 (2%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+YKI+ + L S V+ A W + A + + V+LEE GY+ ++
Sbjct: 3 IYKIVGIALSAMLLLASCTNSDLEKKKVKIAYANWLEGIAMSHLAKVVLEEH-GYEVELQ 61
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ F S+ K D+F+ W P K + I+ + E A+ L V
Sbjct: 62 NADLAPIFVSMSGKKSDVFLDAWLPITMKDYMDQYGDS-IEFLGEVYGEARVGLVVPQYV 120
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
I+S ++ K ++I GI+ G + I G+ L+ +S
Sbjct: 121 ---TIQSISELEANKDRFSSEIVGIDAGAGIMKTTDKAIAAYGLD--GYTLMTSSSSTML 175
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ +++ V W PH + ++ +L +++ G ++ + + +K P
Sbjct: 176 ASLKKAMDKGEWIVITGWTPHWMFDQFDLKFLDDPKKVYGD-LEEIHAIAWKGFSEKDPF 234
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+ NIK + + M + + + D + + R + H L+ +W+
Sbjct: 235 AAEFFGNIKLTTEELSSFMTAMKDARMDEEEIARKWMDEHRQLVDSWI 282
>gi|329115943|ref|ZP_08244660.1| ABC transporter, substrate-binding protein, QAT family
[Streptococcus parauberis NCFD 2020]
gi|326906348|gb|EGE53262.1| ABC transporter, substrate-binding protein, QAT family
[Streptococcus parauberis NCFD 2020]
Length = 575
Score = 196 bits (497), Expect = 5e-48, Method: Composition-based stats.
Identities = 53/277 (19%), Positives = 108/277 (38%), Gaps = 10/277 (3%)
Query: 13 TFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLK 72
TF + ++ V+ + W A+T + + +L++ GY+ I L V ++++
Sbjct: 309 TFVNMASGSTETGEKVKISYMQWDSEIASTNVIAELLKQK-GYQVEITPLDNAVMWQTVA 367
Query: 73 NKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIA 132
N D + W P + ++ ++ + NL+G K L V K I
Sbjct: 368 NGDADFSVSPWLPVTQAEHMKKYKD-QLEDLGPNLKGTKLGLVVPTYM-----KDVNSIE 421
Query: 133 KYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIP 192
+ KI GIEPG + + +L + LI +S A + + + +N
Sbjct: 422 DLSDQAKKKITGIEPGAGITSATKKTMKSYS-NLSDWELILSSTGAMTTSLDQAYKNKKE 480
Query: 193 AVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSV 252
V W PH + S + YL + + G ++ T+ R P + +++ ++
Sbjct: 481 IVVTGWSPHWMFSKYKLKYLKDP-KKTLGGSENINTIARLGLKKDKPKLYKIVDKFNWTT 539
Query: 253 ALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+M + N D + ++ +P+ + W
Sbjct: 540 QDMESVMLDM-NEGMDPADAAKKWIKANPEKVAEWTK 575
>gi|24379499|ref|NP_721454.1| putative ABC transporter, proline/glycine betaine permease protein
[Streptococcus mutans UA159]
gi|290580500|ref|YP_003484892.1| putative proline/glycine betaine ABC transporter permease
[Streptococcus mutans NN2025]
gi|24377438|gb|AAN58760.1|AE014944_10 putative ABC transporter, proline/glycine betaine permease protein
[Streptococcus mutans UA159]
gi|254997399|dbj|BAH88000.1| putative ABC transporter, proline/glycine betaine permease protein
[Streptococcus mutans NN2025]
Length = 576
Score = 195 bits (496), Expect = 5e-48, Method: Composition-based stats.
Identities = 57/292 (19%), Positives = 117/292 (40%), Gaps = 16/292 (5%)
Query: 4 ILAVCLFLTTFSISYA------RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
I+A+ + A + A ++ + W A+T + + +L++ GYK
Sbjct: 293 IIALAALVLFVFAGIARLFVQGQSAGGGQKIKLSYVEWDSEVASTNVLAQVLKDQ-GYKV 351
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+ L V ++S+ D + W P+ + +I + NL+G K LAV
Sbjct: 352 EMTPLDNAVMWQSVSKGETDAMVSAWLPNTHGDQYKKY-KNNIVDLGPNLKGVKLGLAVP 410
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
K+ I + KI GIEPG + + + +L ++L+ AS
Sbjct: 411 TYM-----KNVNRIEDLTDQADKKITGIEPGAGIMKAANKALKSYS-NLSDWKLVSASTG 464
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDK 237
A + + + +N V +W PH + + + YL ++ G E+ ++++ R
Sbjct: 465 AMTTALDQAYKNKKDIVVTAWSPHWMFAKYKLKYLKDSKKDFGSIES-IHSITRKGLKKD 523
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
P ++++ ++ +M I NN + + ++ HP + +W
Sbjct: 524 IPKANKIIDKFNWTQKDMEAVMLDI-NNGMSPEKAAKKWIKEHPKKVASWTS 574
>gi|15674389|ref|NP_268563.1| putative glycine-betaine binding permease [Streptococcus pyogenes
M1 GAS]
gi|13621479|gb|AAK33284.1| putative glycine-betaine binding permease protein [Streptococcus
pyogenes M1 GAS]
Length = 575
Score = 195 bits (496), Expect = 5e-48, Method: Composition-based stats.
Identities = 56/286 (19%), Positives = 105/286 (36%), Gaps = 10/286 (3%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
+ + + AD V A W A+T + + +L+ GY + L
Sbjct: 300 VFLIAALGRGIMAMTSGMADKGETVNIAYVQWDSEVASTHVIAEVLKNE-GYHVTLTPLD 358
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
V ++++ N D W P + + + NL+G K LAV
Sbjct: 359 NAVMWQTVANGNADFSTSAWLPVTHGQQYQKY-KSKLDDLGPNLKGTKLGLAVPKYM--- 414
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
I K+ KI GIEPG + +L + L+ AS A + +
Sbjct: 415 --TDVNSIEDLSKQADQKITGIEPGAGIMAAAQKTLKEYH-NLSSWELVAASTGAMTTSL 471
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
+ + P V +W PH + + ++ YL +EI G E ++ T+ R + PN+ +
Sbjct: 472 DQAIKKKDPIVVTAWSPHWMFAKYDLKYLKDPKEIFGSTE-NINTIARKGLKKELPNVYK 530
Query: 244 LLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
++ ++ +M I N + + + + + +W
Sbjct: 531 IIDKFHWTQKDMEAVMLDI-NKGMSPEAAAKKWVEANKSKVSSWTK 575
>gi|94993560|ref|YP_601658.1| glycine betaine-binding protein / glycine betaine transport system
permease protein [Streptococcus pyogenes MGAS10750]
gi|94547068|gb|ABF37114.1| Glycine betaine-binding protein / Glycine betaine transport system
permease protein [Streptococcus pyogenes MGAS10750]
Length = 575
Score = 195 bits (496), Expect = 6e-48, Method: Composition-based stats.
Identities = 55/286 (19%), Positives = 103/286 (36%), Gaps = 10/286 (3%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
+ + + AD V A W A+T + + +L+ GY + L
Sbjct: 300 VFLIAALGRGIMAMTSGMADKGETVNIAYVQWDSEVASTHVIAEVLKNE-GYHVTLTPLD 358
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
V ++++ N D W P + + + NL+G K LAV
Sbjct: 359 NAVMWQTVANGNADFSTSAWLPVTHGQQYQKY-KSKLDDLGPNLKGTKLGLAVPKYM--- 414
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
I K+ KI GIEPG + +L + L+ AS A + +
Sbjct: 415 --TDVNSIEDLSKQADQKITGIEPGAGIMAAAKKTLKEYH-NLSSWELVAASTGAMTTSL 471
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
+ + P V +W PH + + ++ YL +E G E ++ T+ R PN+ +
Sbjct: 472 DQAIKKKDPIVVTAWSPHWMFAKYDLKYLKDPKETFGSTE-NINTIARKGLKKDLPNVYK 530
Query: 244 LLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
++ ++ +M I N + + + + + +W
Sbjct: 531 IIDKFHWTQKDMEAVMLDI-NKGMSPEAAAKKWVEANKSKVSSWTK 575
>gi|159906171|ref|YP_001549833.1| glycine betaine ABC transporter substrate-binding protein
[Methanococcus maripaludis C6]
gi|159887664|gb|ABX02601.1| Substrate-binding region of ABC-type glycine betaine transport
system [Methanococcus maripaludis C6]
Length = 295
Score = 195 bits (495), Expect = 7e-48, Method: Composition-based stats.
Identities = 65/287 (22%), Positives = 118/287 (41%), Gaps = 6/287 (2%)
Query: 4 ILAVCLFLTTFSISYARDAD-SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL 62
IL + + + S D ++F W + + + VILEE GY + L
Sbjct: 11 ILGLAVMFSGCVQSSEGTEDIEKGTIKFGLPPWPGVTVKSEVVKVILEEQ-GYDVELNQL 69
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
+T+ L + +DI + W P+ + + +++V N+ LAV +
Sbjct: 70 DAGITYAKLADGELDILLAGWLPTTHQDYWGQYGD-QLEMVHVNVGKTALGLAVPTYTYE 128
Query: 123 LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
GI+S D+ ++ A+I GIEPG I N G+ L +S A ++
Sbjct: 129 AGIQSITDLNGNEEFFDARIVGIEPGAGIMANTERAITNYGLE--GYELQSSSTPAMMAE 186
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ R N + WEPH + NI L E++ G G+ VYT+ R D+ D P
Sbjct: 187 LARAMNENENIIVTVWEPHSVFFKFNITMLDDPEKVYGDGD-KVYTIARKDFKDDYPEAY 245
Query: 243 RLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+ + ++++E + + D + + + +P+ + W
Sbjct: 246 EFFQKFEVDPSVQSEWIYKYSDEGMDPEEIAEEWVANNPEFVAEWTS 292
>gi|21909680|ref|NP_663948.1| putative glycine-betaine binding permease protein [Streptococcus
pyogenes MGAS315]
gi|21903863|gb|AAM78751.1| putative glycine-betaine binding permease protein [Streptococcus
pyogenes MGAS315]
Length = 561
Score = 195 bits (495), Expect = 7e-48, Method: Composition-based stats.
Identities = 55/286 (19%), Positives = 103/286 (36%), Gaps = 10/286 (3%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
+ + + AD V A W A+T + + +L+ GY + L
Sbjct: 286 VFLIAALGRGIMAMTSGMADKGETVNIAYVQWDSEVASTHVIAEVLKNE-GYHVTLTPLD 344
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
V ++++ N D W P + + + NL+G K LAV
Sbjct: 345 NAVMWQTVANGNADFSTSAWLPVTHGQQYQKY-KSKLDDLGPNLKGTKLGLAVPKYM--- 400
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
I K+ KI GIEPG + +L + L+ AS A + +
Sbjct: 401 --TDVNSIEDLSKQADQKITGIEPGAGIMAAAKKTLKEYH-NLSSWELVAASTGAMTTSL 457
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
+ + P V +W PH + + ++ YL +E G E ++ T+ R PN+ +
Sbjct: 458 DQAIKKKDPIVVTAWSPHWMFAKYDLKYLKDPKETFGSTE-NINTIARKGLKKDLPNVYK 516
Query: 244 LLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
++ ++ +M I N + + + + + +W
Sbjct: 517 IIDKFHWTQKDMAAVMLDI-NKGMSPEAAAKKWVEANKSKVSSWTK 561
>gi|114319895|ref|YP_741578.1| response regulator receiver protein [Alkalilimnicola ehrlichii
MLHE-1]
gi|114226289|gb|ABI56088.1| response regulator receiver protein [Alkalilimnicola ehrlichii
MLHE-1]
Length = 282
Score = 195 bits (495), Expect = 7e-48, Method: Composition-based stats.
Identities = 58/290 (20%), Positives = 108/290 (37%), Gaps = 11/290 (3%)
Query: 1 MYKILAVCLFLTTFSISYARD--ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M+K L+ + A + + W A+T + V+LEE GY
Sbjct: 1 MHKSLSSLIVAAAAGTLMVTSLSAAAEGRINMPYVEWDSEVASTNVVRVVLEEA-GYDVR 59
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
++ ++++ + D + W P+ + + + NL+G + L V
Sbjct: 60 TTSVSAAAMWQAVASGDQDAMVAAWLPTTHASYLEQTRD-RVVDLGPNLEGTRIGLVVPA 118
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
I S +++ + +I GI+PG I RL++ S
Sbjct: 119 YVE---IDSIEELNDHADRFDGRIVGIDPGAGIMSTTETAIEEYGL--TNLRLVDGSSAT 173
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+ +R RN V W PH ++ YL + I G GE ++T+VR +
Sbjct: 174 MAAALRDAIRNEDWVVVTGWTPHWKEGRWDLKYLEDPKGIYG-GEEEIHTIVRQGLEEDH 232
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
P +L N +++ E+M + D + + + DL++ WL
Sbjct: 233 PTAYAILDNFQWTPEHMAEVMV-MNEEGGDPYENAKKWVEENRDLVEQWL 281
>gi|91772544|ref|YP_565236.1| ABC glycine betaine/L-proline transporter, substrate-binding
subunit [Methanococcoides burtonii DSM 6242]
gi|91711559|gb|ABE51486.1| Glycine betaine ABC transporter substrate binding protein
[Methanococcoides burtonii DSM 6242]
Length = 290
Score = 195 bits (495), Expect = 7e-48, Method: Composition-based stats.
Identities = 52/293 (17%), Positives = 102/293 (34%), Gaps = 15/293 (5%)
Query: 1 MYKILAVCLFLTTFSISYARDADSC-----TPVRFADTGWTDIAATTAMTSVILEEILGY 55
+ +L V L + + + V W A+T + +LE+ GY
Sbjct: 5 IKSLLMVLLIAISLVGAGCVQQEDGTDTESKEVTVGYVLWDGEIASTNVIEQVLEKK-GY 63
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
I + + + D W P ++ + + V NL+ L
Sbjct: 64 DVEIIAVDAGALYLGVAQGDFDFTTSAWLPVTQENYWNQYGD-QLVSVRNNLENCPLGLV 122
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
V I S ++ K+ +I GI+PG Q + I ++LI +S
Sbjct: 123 VPAYVE---IDSIAELNDNKEMFNGEIIGIDPGAGIMQNTENAIEAYGLD---YKLISSS 176
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYL 235
+Q+R+ + P V W PH ++ YL E + G + +V T+ R+
Sbjct: 177 TAGMTAQLRKAIDDEEPVVVTLWSPHWSFGRWDLKYLDDPEGVFGQAD-NVETLARTGLE 235
Query: 236 DKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+ P + +L ++ +M + + + + + + + WL
Sbjct: 236 EDMPEVYDVLTRFHWTHEDIQSVMSDM-ESGMAPEDAAAKWIENNSEKVNEWL 287
>gi|315641134|ref|ZP_07896213.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, membrane/binding protein
[Enterococcus italicus DSM 15952]
gi|315483142|gb|EFU73659.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, membrane/binding protein
[Enterococcus italicus DSM 15952]
Length = 579
Score = 195 bits (495), Expect = 8e-48, Method: Composition-based stats.
Identities = 58/298 (19%), Positives = 112/298 (37%), Gaps = 21/298 (7%)
Query: 2 YKILAVCLFLTTFS----------ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEE 51
+++A+ + + + + S + A W A+T + + IL E
Sbjct: 293 KRVVALVSVVAILGSIFVNVWQTKTTQSANDASKGTIHLAYVEWDTEVASTNVMAEILRE 352
Query: 52 ILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAK 111
GY +I L + + S+ D + W P+ K ++ + + NL+GAK
Sbjct: 353 Q-GYTVDITPLDNAIMWESVAKGQSDAMLAAWLPNTHKAQYDKYKD-QVTDLGANLEGAK 410
Query: 112 YMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
L V I + I GIEPG +L + +
Sbjct: 411 LGLVVPSYM------DVDSIEDLTDQANQTIVGIEPGAGVVAAAETTQQTYA-NLSNWTV 463
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVR 231
+S A + + +N P V W PH + + ++ YL + G GE S++T+ R
Sbjct: 464 STSSSGAMMVALEQAYKNQQPIVITGWSPHWMFAKYDLKYLEDPQGTMG-GEESIHTMTR 522
Query: 232 SDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+ D P +++L N +++ +M I N+ Q + + + + + + W
Sbjct: 523 KGFADDFPEANQILDNFEWTTDDIESVMLAI-NDGQTPEQAAKDWIEANQEKVDEWTK 579
>gi|237723325|ref|ZP_04553806.1| glycine betaine-binding protein [Bacteroides sp. 2_2_4]
gi|293373151|ref|ZP_06619513.1| ABC transporter, substrate-binding protein, QAT family [Bacteroides
ovatus SD CMC 3f]
gi|229447847|gb|EEO53638.1| glycine betaine-binding protein [Bacteroides sp. 2_2_4]
gi|292631799|gb|EFF50415.1| ABC transporter, substrate-binding protein, QAT family [Bacteroides
ovatus SD CMC 3f]
gi|295085034|emb|CBK66557.1| ABC-type proline/glycine betaine transport systems, periplasmic
components [Bacteroides xylanisolvens XB1A]
Length = 288
Score = 195 bits (494), Expect = 1e-47, Method: Composition-based stats.
Identities = 56/288 (19%), Positives = 112/288 (38%), Gaps = 8/288 (2%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+YKI+ + L S V+ A W + A + + V+LEE GY+ ++
Sbjct: 3 IYKIVGIVLSAMLLLASCTNSGLEKKKVKIAYANWLEGIAMSHLAKVVLEEH-GYEVELQ 61
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ F S+ K D+F+ W P K + I+ + E A+ L V
Sbjct: 62 NADLAPIFVSMSGKKSDVFLDAWLPITMKDYMDQYGDS-IEFLGEVYGEARVGLVVPQYV 120
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
I+S ++ K ++I GI+ G + I G+ L+ +S
Sbjct: 121 ---TIQSISELEANKDRFSSEIVGIDAGAGIMKTTDKAIAAYGLD--GYTLMTSSSSTML 175
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ +++ V W PH + ++ +L +++ G ++ + + +K P
Sbjct: 176 ASLKKAMDKGEWIVITGWTPHWMFDQFDLKFLDDPKKVYGD-LEEIHAIAWKGFSEKDPF 234
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+ NIK + + M + + + D + + R H L+ +W+
Sbjct: 235 AAEFFGNIKLTTEELSSFMTAMKDARMDEEEIARKWRDEHRQLVDSWI 282
>gi|291295669|ref|YP_003507067.1| Substrate-binding region of ABC-type glycine betaine transport
system [Meiothermus ruber DSM 1279]
gi|290470628|gb|ADD28047.1| Substrate-binding region of ABC-type glycine betaine transport
system [Meiothermus ruber DSM 1279]
Length = 334
Score = 195 bits (494), Expect = 1e-47, Method: Composition-based stats.
Identities = 62/341 (18%), Positives = 108/341 (31%), Gaps = 41/341 (12%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M L + + F + + + P+ FAD W + ILE+ G KT+
Sbjct: 1 MRGKLVLLSLVVAFGTAMGQQCEVNRPIVFADYDWESARVHNRIAQFILEKGYGCKTDAL 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
L ID+ M WY + EG I+ + A V
Sbjct: 61 PGTSIPLITGLGRGDIDVSMEIWYNLTRDVVTQLETEGKIQRLGVTFPDAVQGWFVPTYV 120
Query: 121 -----------FALGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNN 162
A +KS D+ KYK + Y G + +
Sbjct: 121 IKGDSQRGIRPMAPDLKSVFDLPKYKTLFRDPEEPSKGRFYNGVLGWFAERVNTKKLKAY 180
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHY----------- 211
+ A + I P VF W P + ++
Sbjct: 181 GLEAHFTNFRPGTSDALVAAIASAYERGRPIVFYYWGPTWVLGKYDLTMLEEPSYDAETW 240
Query: 212 -----LPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNK 266
+ + F +VY V + + P++ LK + S AL +E++ + N+
Sbjct: 241 NALIGQDNPSKATAFPMETVYNAVNTRLAREAPSVVEFLKKYRTSNALTSELLAYMEENR 300
Query: 267 QDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ V R L+THP+L W+ + + +++R +
Sbjct: 301 AKEEEVARHFLKTHPELWTAWVP-------AEVAERVKRAL 334
>gi|307313301|ref|ZP_07592925.1| Substrate-binding region of ABC-type glycine betaine transport
system [Sinorhizobium meliloti BL225C]
gi|306899314|gb|EFN29949.1| Substrate-binding region of ABC-type glycine betaine transport
system [Sinorhizobium meliloti BL225C]
Length = 333
Score = 195 bits (494), Expect = 1e-47, Method: Composition-based stats.
Identities = 48/340 (14%), Positives = 97/340 (28%), Gaps = 40/340 (11%)
Query: 1 MYKILAV-CLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M K+LA CL L + + A C V A W + + IL E G I
Sbjct: 1 MKKLLASTCLMLGLIAGASTSSAAECGTVTIASMNWQSAEVLSNLDKFILNEGYGCSAEI 60
Query: 60 KLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAVN 117
+ P + DI W L + ++G I V G +
Sbjct: 61 TIGDTVPTITSMAEKGQPDIAPEAWIDLLPDVVKKGQDDGRIITVGSPLPDGGVQGWWIP 120
Query: 118 DVGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
+K + + I G G + + G
Sbjct: 121 QYLADAHPDIKTIGDALKHPELFPASEDPSKGAILNGPQGWGGTVVTTQLFSAFDGEKAG 180
Query: 169 FRLIE-ASELASFSQIRRDQRNNIPAVFLSWEPHPI-------------------NSDLN 208
F L++ S I + + W P + N
Sbjct: 181 FTLVDTGSAAGLDGAIAKAYERKEGLLTYYWSPTALLGKYKMVKLDPGVPHDAAEWKRCN 240
Query: 209 IHYLPGGEEISGFGEASVYTVVRSDYLDK-CPNISRLLKNIKFSVALENEMMKLILNNKQ 267
+ + + ++ T+V + ++ P + L +S +++M + +N+
Sbjct: 241 TVADCHDPKPNAWPVDTIVTLVAKPFSERVGPEVMDYLTKRSWSNETVSQLMAWMTDNQA 300
Query: 268 DRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ + L + D+ W+ + + +++ +
Sbjct: 301 SGEEGAKRFLEENEDMWSKWVS-------PEAAEKIKAAL 333
>gi|94989669|ref|YP_597769.1| glycine betaine-binding protein / glycine betaine transport system
permease protein [Streptococcus pyogenes MGAS10270]
gi|94543177|gb|ABF33225.1| Glycine betaine-binding protein / Glycine betaine transport system
permease protein [Streptococcus pyogenes MGAS10270]
Length = 575
Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats.
Identities = 55/286 (19%), Positives = 103/286 (36%), Gaps = 10/286 (3%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
+ + + AD V A W A+T + + +L+ GY + L
Sbjct: 300 VFLIAALGRGIMAMTSGMADKGETVNIAYVQWDSEVASTHVIAEVLKNE-GYHVTLTPLD 358
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
V ++++ N D W P + + + NL+G K LAV
Sbjct: 359 NAVMWQTVANGNADFSTSAWLPVTHGQQYKKY-QSKLDDLGSNLEGTKLGLAVPKYM--- 414
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
I K+ KI GIEPG + +L + L+ AS A + +
Sbjct: 415 --TDVNSIEDLSKQADQKITGIEPGAGIMAAAKKTLKEYH-NLSSWELVAASTGAMTTSL 471
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
+ + P V +W PH + + ++ YL +E G E ++ T+ R PN+ +
Sbjct: 472 DQAIKKKDPIVVTAWSPHWMFAKYDLKYLKDPKETFGSTE-NINTIARKGLKKDLPNVYK 530
Query: 244 LLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
++ ++ +M I N + + + + + +W
Sbjct: 531 IIDKFHWTQKDMEAVMLDI-NKGMSPEAAAKKWVEANKSKVSSWTK 575
>gi|237713749|ref|ZP_04544230.1| glycine betaine/L-proline ABC transporter [Bacteroides sp. D1]
gi|262409344|ref|ZP_06085887.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294643335|ref|ZP_06721157.1| ABC transporter, substrate-binding protein, QAT family [Bacteroides
ovatus SD CC 2a]
gi|294805994|ref|ZP_06764861.1| ABC transporter, substrate-binding protein, QAT family [Bacteroides
xylanisolvens SD CC 1b]
gi|229446196|gb|EEO51987.1| glycine betaine/L-proline ABC transporter [Bacteroides sp. D1]
gi|262352796|gb|EEZ01893.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|292641322|gb|EFF59518.1| ABC transporter, substrate-binding protein, QAT family [Bacteroides
ovatus SD CC 2a]
gi|294446876|gb|EFG15476.1| ABC transporter, substrate-binding protein, QAT family [Bacteroides
xylanisolvens SD CC 1b]
Length = 288
Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats.
Identities = 56/288 (19%), Positives = 112/288 (38%), Gaps = 8/288 (2%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+YKI+ + L S V+ A W + A + + V+LEE GY+ ++
Sbjct: 3 IYKIVGIVLSAILLLASCTNSDLEKKKVKIAYANWLEGIAMSHLAKVVLEEH-GYEVELQ 61
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ F S+ K D+F+ W P K + I+ + E A+ L V
Sbjct: 62 NADLAPIFVSMSGKKSDVFLDAWLPITMKDYMDQYGDS-IEFLGEVYGEARVGLVVPQYV 120
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
I+S ++ K ++I GI+ G + I G+ L+ +S
Sbjct: 121 ---TIQSISELEANKDRFSSEIVGIDAGAGIMKTTDKAIAAYGLD--GYTLMTSSSSTML 175
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ +++ V W PH + ++ +L +++ G ++ + + +K P
Sbjct: 176 ASLKKAMDKGEWIVITGWTPHWMFDQFDLKFLDDPKKVYGD-LEEIHAIAWKGFSEKDPF 234
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+ NIK + + M + + + D + + R H L+ +W+
Sbjct: 235 AAEFFGNIKLTTEELSSFMTAMKDARMDEEEIARKWRDEHRQLVDSWI 282
>gi|16264760|ref|NP_437552.1| putative amino acid uptake ABC transporter periplasmic
solute-binding protein precursor [Sinorhizobium meliloti
1021]
gi|307320766|ref|ZP_07600177.1| Substrate-binding region of ABC-type glycine betaine transport
system [Sinorhizobium meliloti AK83]
gi|15140898|emb|CAC49412.1| putative amino acid uptake ABC transporter periplasmic
solute-binding protein precursor [Sinorhizobium meliloti
1021]
gi|306893584|gb|EFN24359.1| Substrate-binding region of ABC-type glycine betaine transport
system [Sinorhizobium meliloti AK83]
Length = 333
Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats.
Identities = 48/340 (14%), Positives = 97/340 (28%), Gaps = 40/340 (11%)
Query: 1 MYKILAV-CLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M K+LA CL L + + A C V A W + + IL E G I
Sbjct: 1 MKKLLASTCLMLGLIAGASTSSAAECGTVTIASMNWQSAEVLSNLDKFILNEGYGCSAEI 60
Query: 60 KLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAVN 117
+ P + DI W L + ++G I V G +
Sbjct: 61 TIGDTVPTITSMAEKGQPDIAPEAWIDLLPDVVKKGQDDGRIITVGSPLPDGGVQGWWIP 120
Query: 118 DVGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
+K + + I G G + + G
Sbjct: 121 QYLADAHPDIKTIGDALKHPELFPASEDPSKGAILNGPQGWGGTVVTTQLFSAFDGEKAG 180
Query: 169 FRLIE-ASELASFSQIRRDQRNNIPAVFLSWEPHPI-------------------NSDLN 208
F L++ S I + + W P + N
Sbjct: 181 FTLVDTGSAAGLDGAIAKAYERKEGLLTYYWSPTALLGKYKMVKLDPGVPHDAAEWKRCN 240
Query: 209 IHYLPGGEEISGFGEASVYTVVRSDYLDK-CPNISRLLKNIKFSVALENEMMKLILNNKQ 267
+ + + ++ T+V + ++ P + L +S +++M + +N+
Sbjct: 241 TVADCPDPKPNAWPVDTIVTLVAKPFSERVGPEVMDYLTKRSWSNETVSQLMAWMTDNQA 300
Query: 268 DRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ + L + D+ W+ + + +++ +
Sbjct: 301 SGEEGAKRFLEENEDMWSKWVS-------PEAAEKIKAAL 333
>gi|23100397|ref|NP_693864.1| ABC transporter substrate-binding protein [Oceanobacillus iheyensis
HTE831]
gi|22778630|dbj|BAC14898.1| ABC transporter substrate-binding protein [Oceanobacillus iheyensis
HTE831]
Length = 331
Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats.
Identities = 55/337 (16%), Positives = 114/337 (33%), Gaps = 37/337 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSC---TPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M K L + + ++ DA S + AD GW I ++ I+EE Y T
Sbjct: 1 MRKTLLLLMTAVALVLAACGDASSDSEIDTIVLADAGWDSIKVHNSIAQRIIEEGYDYNT 60
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
++ + T + L+ I+++ W ++++ +E G I+ ++ N L V
Sbjct: 61 DVTSGSTAATVQGLREGDINVYTEVWTDNIKELYEESIESGDIEKLSVNFDDNVQGLYVP 120
Query: 118 DVGFA-----------LGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMI 159
+++ +D+ Y + ++ G Q I +
Sbjct: 121 SYVIEGDPERGIEPLAPDLETVEDLKNYPEVFQDPEDPSKGRLINAPSGWAVEQSINEKF 180
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE--- 216
S+ A + + V W P I + ++ L
Sbjct: 181 ETYGLGETFNNFGPGSDAAIVADLASAYEAGEGWVGYYWSPTAITAKYDLTLLKEDPYEE 240
Query: 217 ------EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQ 270
+ + F V V D+ ++ P ++ LKN + S AL E + + N +
Sbjct: 241 DQWNEDKSTEFPPNDVVVAVHKDFPEQAPEVTEFLKNYETSSALTEEALNYMEENGASPE 300
Query: 271 FVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ H D+ +W+ +D + ++ +
Sbjct: 301 EAAEWWMNEHEDVWTSWVP-------EDVATAVKESL 330
>gi|209558734|ref|YP_002285206.1| L-proline Glycine Betaine ABC transport system permease protein
proW [Streptococcus pyogenes NZ131]
gi|209539935|gb|ACI60511.1| L-proline Glycine Betaine ABC transport system permease protein
proW [Streptococcus pyogenes NZ131]
Length = 575
Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats.
Identities = 55/286 (19%), Positives = 103/286 (36%), Gaps = 10/286 (3%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
+ + + AD V A W A+T + + +L+ GY + L
Sbjct: 300 VFLIAALGRGIMAMTSGMADKGETVNIAYVQWDSEVASTHVIAEVLKNE-GYHVTLTPLD 358
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
V ++++ N D W P + + + NL+G K LAV
Sbjct: 359 NAVMWQTVANGNADFSTSAWLPVTHGQQYQKY-KSKLDDLGPNLKGTKLGLAVPKYM--- 414
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
I K+ KI GIEPG + +L + L+ AS A + +
Sbjct: 415 --TDVNSIEDLSKQADQKITGIEPGAGIMAAAQKTLKEYH-NLSSWELVAASTGAMTTSL 471
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
+ + P V +W PH + + ++ YL +E G E ++ T+ R PN+ +
Sbjct: 472 DQAIKKKDPIVVTAWSPHWMFAKYDLKYLKDPKETFGSTE-NINTIARKGLKKDLPNVYK 530
Query: 244 LLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
++ ++ +M I N + + + + + +W
Sbjct: 531 IIVKFHWTQKDMEAVMLDI-NKGMSPEAAAKKWVEANKSKVSSWTK 575
>gi|322412777|gb|EFY03685.1| Glycine betaine-binding protein / Glycine betaine transport system
permease protein [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
Length = 575
Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats.
Identities = 53/286 (18%), Positives = 105/286 (36%), Gaps = 10/286 (3%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
+ + + A+ V A W A+T + + +L++ GY + L
Sbjct: 300 VFLIAALGRGIMAMTSGMAEKGENVNIAYVQWDSEVASTNVIAEVLKKE-GYHVTLTPLD 358
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
V ++++ N D W P + + + NL+G K LAV
Sbjct: 359 NAVMWQTIANGNADFSTSAWLPVTHGQQYQKY-KSKLDDLGPNLKGTKLGLAVPKYM--- 414
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
I + KI GIEPG + + + +L + L+ AS A + +
Sbjct: 415 --TDVNSIGDLTSQANQKITGIEPGAGIMTAAKNALKDYD-NLSSWELVAASTGAMTTSL 471
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
+ + P V +W PH + + ++ YL +E G E ++ T+ R PN+ +
Sbjct: 472 DQAIKKKDPIVVTAWSPHWMFAKYDLKYLKDPKETFGSAE-NINTIARKGLKKDLPNVYK 530
Query: 244 LLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
++ ++ +M I N + + + + + +W
Sbjct: 531 IIDKFHWTKKDMEAVMLDI-NKGMTPEAAAKKWVEANKSKVSSWTK 575
>gi|262281922|ref|ZP_06059691.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA]
gi|262262376|gb|EEY81073.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA]
Length = 574
Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats.
Identities = 58/292 (19%), Positives = 110/292 (37%), Gaps = 17/292 (5%)
Query: 2 YKILAVCLFLTTFSISYAR------DADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
KI+ ++ V A W A+T + + L+E +GY
Sbjct: 292 KKIMLWSALAAVILTAFVGNQVTKLQQSKKEKVNLAYVEWDSEVASTNVVAEALKE-MGY 350
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
I L V ++S+ N D + W P+ + ++ I + NL+G K L
Sbjct: 351 DVTITPLDNAVMWKSVANGEADAMVSAWLPTTHAALYEEYKD-KIVDLGPNLEGVKTGLV 409
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
V I + I GIEPG + +L G+ L +S
Sbjct: 410 VPSYM------DADSIEDLSDQAKKTITGIEPGAGIMSATEKTMQKYS-NLSGWNLSSSS 462
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYL 235
A + + + +N + W PH + S ++ YL + G G+ +++T+ R +
Sbjct: 463 TGAMTTALDQAIKNKEDIIVTGWSPHWMFSKYDLKYLKDPKGTMG-GKEAIHTITRKNLD 521
Query: 236 DKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
P ++++L N ++ E+M I N + + ++ H +++W
Sbjct: 522 KDLPEVNKVLDNFNWTQKDMEEVMLKI-NEGSSPEAAAKEWIKNHQKEVESW 572
>gi|306828147|ref|ZP_07461410.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, membrane/binding protein
[Streptococcus pyogenes ATCC 10782]
gi|304429684|gb|EFM32730.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, membrane/binding protein
[Streptococcus pyogenes ATCC 10782]
Length = 575
Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats.
Identities = 55/277 (19%), Positives = 101/277 (36%), Gaps = 10/277 (3%)
Query: 13 TFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLK 72
+ AD V A W A+T + + +L+ GY + L V ++++
Sbjct: 309 GIMTMASGMADKGETVNIAYVQWDSEVASTHVIAEVLKNE-GYHVTLTPLDNAVMWQTVA 367
Query: 73 NKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIA 132
N D W P + + + NL+G K LAV I
Sbjct: 368 NGNADFSTSAWLPVTHGQQYQKY-KSKLDDLGPNLKGTKLGLAVPKYM-----TDVNSIE 421
Query: 133 KYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIP 192
K+ KI GIEPG + +L + L+ AS A + + + + P
Sbjct: 422 DLSKQADQKITGIEPGAGIMAAAKKTLKEYH-NLSSWELVAASTGAMTTSLDQAIKKKDP 480
Query: 193 AVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSV 252
V +W PH + + ++ YL +E G E ++ T+ R PN+ +++ ++
Sbjct: 481 IVVTAWSPHWMFAKYDLKYLKDPKETFGSTE-NINTIARKGLKKDLPNVYKIIDKFHWTQ 539
Query: 253 ALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+M I N + + + + + +W
Sbjct: 540 KDMAAVMLDI-NKGMSPEAAAKKWVEANKSKVSSWTK 575
>gi|94987791|ref|YP_595892.1| glycine betaine transport system permease protein [Streptococcus
pyogenes MGAS9429]
gi|94541299|gb|ABF31348.1| glycine betaine-binding protein [Streptococcus pyogenes MGAS9429]
Length = 578
Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats.
Identities = 55/277 (19%), Positives = 101/277 (36%), Gaps = 10/277 (3%)
Query: 13 TFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLK 72
+ AD V A W A+T + + +L+ GY + L V ++++
Sbjct: 312 GIMTMASGMADKGETVNIAYVQWDSEVASTHVIAEVLKNE-GYHVTLTPLDNAVMWQTVA 370
Query: 73 NKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIA 132
N D W P + + + NL+G K LAV I
Sbjct: 371 NGNADFSTSAWLPVTHGQQYQKY-KSKLDDLGPNLKGTKLGLAVPKYM-----TDVNSIE 424
Query: 133 KYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIP 192
K+ KI GIEPG + +L + L+ AS A + + + + P
Sbjct: 425 DLSKQADQKITGIEPGAGIMAAAKKTLKEYH-NLSSWELVAASTGAMTTSLDQAIKKKDP 483
Query: 193 AVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSV 252
V +W PH + + ++ YL +E G E ++ T+ R PN+ +++ ++
Sbjct: 484 IVVTAWSPHWMFAKYDLKYLKDPKETFGSTE-NINTIARKGLKKDLPNVYKIIDKFHWTQ 542
Query: 253 ALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+M I N + + + + + +W
Sbjct: 543 KDMEAVMLDI-NKGMSPEAAAKKWVEANKSKVSSWTK 578
>gi|50913550|ref|YP_059522.1| glycine betaine transport system permease protein [Streptococcus
pyogenes MGAS10394]
gi|139473033|ref|YP_001127748.1| glycine-betaine binding permease protein [Streptococcus pyogenes
str. Manfredo]
gi|50902624|gb|AAT86339.1| Glycine betaine-binding protein [Streptococcus pyogenes MGAS10394]
gi|134271279|emb|CAM29495.1| putative glycine-betaine binding permease protein [Streptococcus
pyogenes str. Manfredo]
Length = 575
Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats.
Identities = 55/277 (19%), Positives = 101/277 (36%), Gaps = 10/277 (3%)
Query: 13 TFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLK 72
+ AD V A W A+T + + +L+ GY + L V ++++
Sbjct: 309 GIMTMASGMADKGETVNIAYVQWDSEVASTHVIAEVLKNE-GYHVTLTPLDNAVMWQTVA 367
Query: 73 NKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIA 132
N D W P + + + NL+G K LAV I
Sbjct: 368 NGNADFSTSAWLPVTHGQQYQKY-KSKLDDLGPNLKGTKLGLAVPKYM-----TDVNSIE 421
Query: 133 KYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIP 192
K+ KI GIEPG + +L + L+ AS A + + + + P
Sbjct: 422 DLSKQADQKITGIEPGAGIMAAAKKTLKEYH-NLSSWELVAASTGAMTTSLDQAIKKKDP 480
Query: 193 AVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSV 252
V +W PH + + ++ YL +E G E ++ T+ R PN+ +++ ++
Sbjct: 481 IVVTAWSPHWMFAKYDLKYLKDPKETFGSTE-NINTIARKGLKKDLPNVYKIIDKFHWTQ 539
Query: 253 ALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+M I N + + + + + +W
Sbjct: 540 KDMEAVMLDI-NKGMSPEAAAKKWVEANKSKVSSWTK 575
>gi|327459038|gb|EGF05386.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Streptococcus sanguinis
SK1057]
Length = 574
Score = 193 bits (490), Expect = 3e-47, Method: Composition-based stats.
Identities = 58/292 (19%), Positives = 111/292 (38%), Gaps = 17/292 (5%)
Query: 2 YKILAVCLFLTTFSISYAR------DADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
KI+ ++ V A W A+T + + L+E +GY
Sbjct: 292 KKIMLWSALAAVILTAFVGNQVTKLQQSKKEKVNLAYVEWDSEVASTNVVAEALKE-MGY 350
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
I L V ++S+ N D + W P+ + ++ + + NL+G K L
Sbjct: 351 DVTITPLDNAVMWKSVANGEADAMVSAWLPTTHAALYDEYKD-KLVDLGPNLEGVKTGLV 409
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
V I + I GIEPG + +L G+ L +S
Sbjct: 410 VPSYM------DADSIEDLSDQAKKTITGIEPGAGIMTATEKTMQEYS-NLSGWNLSSSS 462
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYL 235
A + + + +N + W PH + S ++ YL + G G+ +++T+ R +
Sbjct: 463 TGAMTTALDQAIKNKENIIVTGWSPHWMFSKYDLKYLKDPKGTMG-GKEAIHTMTRKNLD 521
Query: 236 DKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
P ++++L N K++ E+M I N + + ++ H +++W
Sbjct: 522 KDLPEVNKVLDNFKWTQKDMEEVMLKI-NEGSSPEAAAKEWIKNHQKEVESW 572
>gi|124485882|ref|YP_001030498.1| hypothetical protein Mlab_1062 [Methanocorpusculum labreanum Z]
gi|124363423|gb|ABN07231.1| Substrate-binding region of ABC-type glycine betaine transport
system [Methanocorpusculum labreanum Z]
Length = 298
Score = 193 bits (490), Expect = 3e-47, Method: Composition-based stats.
Identities = 52/291 (17%), Positives = 100/291 (34%), Gaps = 10/291 (3%)
Query: 4 ILAVCLFLTTFSISY-ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL 62
I + L L F+ ++ + + W ++T + + EE GY + +
Sbjct: 17 ITGLLLMLVLFTAGCTSQTTEPAKEISIGYVTWDCAISSTNVMKQVFEEA-GYDVTLVAV 75
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
+++L +D W P + + + A+ L V
Sbjct: 76 DAGPLYQALAKGDVDFTTTAWLPYTHESYWETYGDQIAYVNENIPGAARIGLVVPSYV-- 133
Query: 123 LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
I S ++ + G +I GIEPG R I+ + L+ +S ++
Sbjct: 134 -TINSIDELNSVADKFGNQIIGIEPGAGITSRTEQAIDEYGLD---YTLVTSSSAGMAAE 189
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ N V W PH S ++ +L + + G G + T+ R P
Sbjct: 190 LGSAISKNEWIVVTGWSPHWKFSRYDLKFLEDPKGVYG-GAEDIVTLARLGLETDDPEAY 248
Query: 243 RLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
+L +++ +M I + ++ HPD + W+ G TT
Sbjct: 249 GILSRFQWTTEDITSVMNDIA-GGMSETDAAKAWVKAHPDTVTYWINGTTT 298
>gi|222149404|ref|YP_002550361.1| ABC transporter substrate binding protein (proline/glycine betaine)
[Agrobacterium vitis S4]
gi|221736387|gb|ACM37350.1| ABC transporter substrate binding protein (proline/glycine betaine)
[Agrobacterium vitis S4]
Length = 333
Score = 193 bits (490), Expect = 3e-47, Method: Composition-based stats.
Identities = 100/236 (42%), Positives = 146/236 (61%), Gaps = 9/236 (3%)
Query: 75 GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKY 134
+D +P++ YL++ SI VA NL+GAKY LA N G LGIKS++D+A +
Sbjct: 102 QLDASPEGSHPAI------YLDDKSIDSVAVNLEGAKYTLATNAAGAKLGIKSFKDVAAH 155
Query: 135 KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAV 194
K EL KIYGIEPGNEGN I+ +I +KF LKGF ++E+SE SQ+ R + N P +
Sbjct: 156 KAELDGKIYGIEPGNEGNGMIVSLIEGDKFGLKGFNVVESSEQGMLSQVTRADKENKPVI 215
Query: 195 FLSWEPHPINSDLNIHYLPGGEEISGFGEA---SVYTVVRSDYLDKCPNISRLLKNIKFS 251
FL+W PHP+N+ I YL G++ +VYTV R Y +CPN+ +LL N+KFS
Sbjct: 216 FLAWAPHPMNTAHQITYLADGDDTVFGPNYGGATVYTVARGGYAKECPNVGKLLTNMKFS 275
Query: 252 VALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ +EN +M IL++ +D +T L+ +P +++ WL GVTT DG+D ++ +
Sbjct: 276 LDMENAIMGKILDDGEDADKAAKTWLKANPTVIEPWLAGVTTKDGKDGLAAVKTKL 331
>gi|78355192|ref|YP_386641.1| putative glycine betaine/L-proline ABC transporter solute-binding
protein [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
gi|78217597|gb|ABB36946.1| putative glycine betaine/L-proline ABC transporter, solute-binding
protein [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
Length = 307
Score = 193 bits (489), Expect = 4e-47, Method: Composition-based stats.
Identities = 70/309 (22%), Positives = 125/309 (40%), Gaps = 4/309 (1%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M ++ V L L +F A +RF W + + + ILE +GY T
Sbjct: 1 MKRLFGVTLLLVSFLCLPV--AAQADAIRFGVPPWPGVTVKSEVVCQILEA-MGYDTVQL 57
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ P+ ++ L +D+ + W P + P ++ +I +VA N+ A L V
Sbjct: 58 EIGPPIIYKGLTTDDVDVCVAAWIPQQNEMFLPLRDKKAIDVVAVNIDEAGTSLCVPSYV 117
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ G++S D+ + IYGIE G+ +MI+++ L + + ++
Sbjct: 118 WEAGVRSIADLDARGEMFDRTIYGIEVGSGMQTSTEEMIHDDVAGLGDWTQVSSTTPVML 177
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPG-GEEISGFGEASVYTVVRSDYLDKCP 239
++ R VF W+PH +N +++ YL G E+ VYT+ + + P
Sbjct: 178 RAVQERIRAGKWVVFHGWQPHWMNFQIDMKYLEGVPGTEKLVSESVVYTIASRLFATRHP 237
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDP 299
LK A +++ + K + V +R + D + WL GVT DG
Sbjct: 238 QAHAFLKKFYVRGATQSQWINDFGFRKTAPEKVASDWIRANIDTVATWLDGVTAADGSAG 297
Query: 300 SRQLERFMN 308
+ N
Sbjct: 298 IDAVRAAFN 306
>gi|323128141|gb|ADX25438.1| Glycine betaine-binding protein / Glycine betaine transport system
permease protein [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
Length = 575
Score = 193 bits (489), Expect = 4e-47, Method: Composition-based stats.
Identities = 53/286 (18%), Positives = 105/286 (36%), Gaps = 10/286 (3%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
+ + + AD V A W A+T + + +L++ GY + L
Sbjct: 300 VFLIAALGRGIMAMTSGMADKGENVNIAYVQWDSEVASTNVIAEVLKKE-GYHVTLTPLD 358
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
V ++++ N D W P + + + NL+G K LAV
Sbjct: 359 NAVMWQTVANGNADFSTSAWLPVTHGQQYQKY-KSKLDDLGPNLKGTKLGLAVPTYM--- 414
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
I + +I GIEPG + + + +L + L+ AS A + +
Sbjct: 415 --TDVNSIEDLTSQADQRITGIEPGAGIMTAAKNALKDYD-NLSSWELVAASTGAMTTSL 471
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
+ + P V +W PH + + ++ YL +E G E ++ T+ R PN+ +
Sbjct: 472 DQAIKKKDPIVVTAWSPHWMFAKYDLKYLKDSKETFGSAE-NINTIARKGLKKDLPNVYK 530
Query: 244 LLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
++ ++ +M I N + + + + + +W
Sbjct: 531 IIDKFHWTQKDMEAVMLDI-NKGMSPEAAAKKWVEANKSKVSSWTK 575
>gi|310640756|ref|YP_003945514.1| glycine betaine abc transporter permease protein [Paenibacillus
polymyxa SC2]
gi|309245706|gb|ADO55273.1| Glycine betaine ABC transporter permease protein [Paenibacillus
polymyxa SC2]
Length = 864
Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats.
Identities = 55/286 (19%), Positives = 106/286 (37%), Gaps = 16/286 (5%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYW 83
+ + + W A+T + I+E LGYK + + + + +D W
Sbjct: 481 NGDTFKLSYVAWDSEIASTNLLKYIMENKLGYKVTALQVEAGPMWTGVASGDVDASPAAW 540
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQ-----------DIA 132
P ++ + + N+ G K L V I Q
Sbjct: 541 LPLTHADYWTKYKD-KLDDLGANMTGVKTGLVVPAYMNVKSITELQGNGAEAAPASAATG 599
Query: 133 KYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIP 192
+ KE+G +I G +PG + I++ S ++L+E+S A + + + + P
Sbjct: 600 DFGKEVGYRIVGTDPGAGLMKLTAKAISDYGLSD--WKLLESSGAAMTATLDKAIKAKQP 657
Query: 193 AVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSV 252
V W PH + + ++ YL ++ G E ++T+ R P L K++
Sbjct: 658 IVVTGWTPHWMFNKYDLKYLKDPKKAYGDKE-EIHTIARKGLKQDAPVAYEFLSRFKWTA 716
Query: 253 ALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
E+M I + Q + +PD ++ W+ G+ +G
Sbjct: 717 EDMGEVMIAI-QDGTPPQQAAKNWADKYPDKVQEWIKGLQPVNGDP 761
Score = 135 bits (339), Expect = 9e-30, Method: Composition-based stats.
Identities = 35/161 (21%), Positives = 65/161 (40%), Gaps = 4/161 (2%)
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
E+ +I GI+ G + I + S ++L+E S A + + + + P +
Sbjct: 326 AEVDYRIIGIDAGAGIMKSTAKAIQDYNLSD--WKLVEGSGAAMTATLDKAIKAKKPIII 383
Query: 196 LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
W PH + + ++ YL ++ G E ++T+ R P LK K++
Sbjct: 384 TGWTPHWMFNKYDLKYLEDPKKSYGEAEG-IHTIARKGLQQDAPTAYEFLKRFKWTAEDM 442
Query: 256 NEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDG 296
EMM I + + H D ++ W G+ T +G
Sbjct: 443 GEMMVAI-QGGTSPEQAAKDWAEKHADKVQEWTQGLQTVNG 482
Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 17/107 (15%), Positives = 36/107 (33%), Gaps = 1/107 (0%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFM 80
+ P++ + W A+T + +LE+ LGYK + + + + +D
Sbjct: 755 QPVNGDPLKLSYAAWDSEIASTNVLKYVLEQKLGYKVTALQVEIGPMWTGVAGGSVDATA 814
Query: 81 GYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKS 127
W P + + + ++ G L V I+
Sbjct: 815 AAWLPLTHADYW-AQYKDKVNDIGTSMTGVMSGLVVPSYVPIDSIED 860
>gi|258405032|ref|YP_003197774.1| Substrate-binding region of ABC-type glycine betaine transport
system [Desulfohalobium retbaense DSM 5692]
gi|257797259|gb|ACV68196.1| Substrate-binding region of ABC-type glycine betaine transport
system [Desulfohalobium retbaense DSM 5692]
Length = 283
Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats.
Identities = 53/288 (18%), Positives = 106/288 (36%), Gaps = 8/288 (2%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K+ + + + V A W+ A++ + +L E +GY +I
Sbjct: 1 MQKLTKIFALVLLLTFIAVPGFAQDKDVEIAYVEWSCATASSNVVKAVLNEEMGYDADIV 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ +++ + +D F+ W P +++ ++ + GAK L V +
Sbjct: 61 SVTAAAMWQATASGDVDGFVTAWLPVTHGHYYDKVKD-EVENLGPLATGAKIGLVVPEYV 119
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
I+S D+ + + I GI+PG + + L E S
Sbjct: 120 ---DIESIADLDDHAAKFDGTITGIDPGAGIMSKSEKALEAYNLD--NMTLGEGSGATMT 174
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ + N V W PH ++ YL + + G G + T+VR D + P
Sbjct: 175 AMLSEAVENEDWIVVTGWSPHWKFGRWDLKYLEDPKNVYG-GSEDITTIVREDLKEDMPE 233
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+ L + +++ +M N + + ++ HP+L+ WL
Sbjct: 234 VYAFLDRFSWDLSVMQGLMAKNQENGK-PYENAKEFIKNHPELVDKWL 280
>gi|251798476|ref|YP_003013207.1| substrate-binding region of ABC-type glycine betaine transporter
[Paenibacillus sp. JDR-2]
gi|247546102|gb|ACT03121.1| Substrate-binding region of ABC-type glycine betaine transport
system [Paenibacillus sp. JDR-2]
Length = 291
Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats.
Identities = 56/295 (18%), Positives = 111/295 (37%), Gaps = 8/295 (2%)
Query: 1 MYKILAVCLFLTTFSIS---YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
+ K + L + ++ A W A+T + +LE L Y
Sbjct: 2 LKKKWGLALTAVIVLAAALAGCSQKTDSKKIKLAYVAWDSEIASTNVVKYVLESKLDYSV 61
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+ + + + + D + W P+ ++ + NL+G K L +
Sbjct: 62 ELLQVDAGPMWAGVSDGSADAMVAAWLPTTHASYLEKYGSS-VEDLGPNLEGTKTGLVIP 120
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
I+ + K + +I GIEPG Q + + ++LIE+S
Sbjct: 121 SYMKENSIEDLNN-EATGKSVDYQIIGIEPGAGIMQSTDKALKDYGLD-GKWKLIESSSA 178
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDK 237
A +++++ P V W PH + +++++ YL + + G GE S++T+ R D
Sbjct: 179 AMATELQKAYEAKKPIVVTGWTPHWMFANMDLKYLEDPKGVYG-GEESIHTIARKDLKSD 237
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVT 292
+ LL ++ ++M I Q + + +H D + WL G+
Sbjct: 238 KSDAYALLDQFTWTADDMAQVMVAI-QGGQSPEEAAKAWADSHSDQVDKWLEGIK 291
>gi|126178942|ref|YP_001046907.1| substrate-binding region of ABC-type glycine betaine transport
system [Methanoculleus marisnigri JR1]
gi|125861736|gb|ABN56925.1| Substrate-binding region of ABC-type glycine betaine transport
system [Methanoculleus marisnigri JR1]
Length = 289
Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats.
Identities = 48/285 (16%), Positives = 95/285 (33%), Gaps = 9/285 (3%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
+ + L L+ FS V W A++ + + EE GY + +
Sbjct: 11 LTGLILTLSLFSAGCTGTETEAKEVSIGYVTWDCAIASSNVMKQVFEEA-GYDVEMVAVD 69
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
F++L + +D W P + + A+ L V
Sbjct: 70 AGPLFQALASGDVDFTTTGWLPHTHAHYWEQYGDQIDYVNENIPGAARIGLVVPTYV--- 126
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
I S +++ + +I GIEPG R I+ + + L+ +S +++
Sbjct: 127 TIDSIEEMNDVSDQFDGRIVGIEPGAGIMTRTEQAIDEYDLN---YELVASSSAGMAAEL 183
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
V W PH ++ +L + + G G V T+ R + P
Sbjct: 184 SSAISGEEWVVVTGWSPHWKFGRFDLKFLEDPKGVYG-GAEDVVTLARQGLAEDDPEAYA 242
Query: 244 LLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+L+ +++ +M I + + + + D + WL
Sbjct: 243 ILERFEWTAEDIALVMTDI-EGGMSEEEAAQKWIDANRDKVDVWL 286
>gi|241896021|ref|ZP_04783317.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, membrane/binding protein
[Weissella paramesenteroides ATCC 33313]
gi|241870752|gb|EER74503.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, membrane/binding protein
[Weissella paramesenteroides ATCC 33313]
Length = 575
Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats.
Identities = 58/285 (20%), Positives = 115/285 (40%), Gaps = 10/285 (3%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
+AV + S + V+ W A++ + + + + GY+ ++ L
Sbjct: 301 VAVAMIGGGVVTSLTSASSQKESVKLVYVQWDSEVASSNVLAQAMRQH-GYQVDLTPLDN 359
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
+ ++S+ N D + W P+ K + I L+ NL+GA L V
Sbjct: 360 SIMWQSIANGQADASVSAWLPNTHKAQYKKY-KNDIDLLGPNLKGATTGLVVPKYM---- 414
Query: 125 IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
+ IA K E G K+ IEPG + I + + +G+++ +S A +
Sbjct: 415 --NVDSIADLKSEAGKKVTAIEPGAGVTKGAEKAIKDYGLNSQGWQVTPSSSGAMAVALG 472
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
+ + V WEPH + ++ YL ++ G G ++ T+ R D P+ ++
Sbjct: 473 KAIKAKQDIVVTGWEPHWMFQKYDLKYLKDPKKSFG-GAETINTMTRKDLKQDKPDAYKV 531
Query: 245 LKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
LK K++ ++M I N + + T ++ + + +W
Sbjct: 532 LKKFKWTKEDMGKVMLDI-QNGKSAKQAANTWIKNNQSKVDSWFK 575
>gi|88800577|ref|ZP_01116139.1| hypothetical ABC transporter, substrate binding protein [Reinekea
sp. MED297]
gi|88776722|gb|EAR07935.1| hypothetical ABC transporter, substrate binding protein [Reinekea
sp. MED297]
Length = 331
Score = 192 bits (488), Expect = 5e-47, Method: Composition-based stats.
Identities = 52/338 (15%), Positives = 101/338 (29%), Gaps = 38/338 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K+ L T S + AD C V AD W+ + +ILEE G +
Sbjct: 1 MNKLKLALLAGATSLASVSALADECGSVTIADMNWSSATLIAHIDQLILEEGFGCDAELV 60
Query: 61 LLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVND 118
T ++ DI W S++ + +EEG ++ +L G + V
Sbjct: 61 PGDTMPTGTSMIEKGEPDIAPELWSNSMKAALDRGVEEGRLRYAGRSLSDGGEEGFWVPQ 120
Query: 119 VGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
+ + + + A G G ++ GF
Sbjct: 121 YLVDDNPELATIEGVLAHPELFPHPEDDDAAMFMGCPAGWNCQISSQNLFRALGMEDAGF 180
Query: 170 RLI-EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--------- 219
L+ S I + W P + + + G +
Sbjct: 181 ELVDPGSGAGLSGSIAKAYERGEGWFGYYWAPTSVLGKYKMVKVDFGSGVDLEHFKSCTT 240
Query: 220 ----------GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDR 269
+ ++V+T+ + + P + F A NE++ + +N+ D
Sbjct: 241 QADCANPKPTMYPPSAVHTITTESFASEQPEAYEYISTRSFPNAQMNELLAWMEDNQADG 300
Query: 270 QFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+F L + + W+ +D + + +
Sbjct: 301 EFGAYYFLENYESVWSEWVS-------EDVADNIRGAL 331
>gi|283131336|dbj|BAI63341.1| glycine betaine-binding protein/glycine betaine transport system
permease protein [Streptococcus dysgalactiae subsp.
equisimilis]
Length = 540
Score = 192 bits (488), Expect = 5e-47, Method: Composition-based stats.
Identities = 53/286 (18%), Positives = 105/286 (36%), Gaps = 10/286 (3%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
+ + + AD V A W A+T + + +L++ GY + L
Sbjct: 265 VFLIAALGRGIMAMTSGMADKGENVNIAYVQWDSEVASTNVIAEVLKKE-GYHVTLTPLD 323
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
V ++++ N D W P + + + NL+G K LAV
Sbjct: 324 NAVMWQTVANGNADFSTSAWLPVTHGQQYQKY-KSKLDDLGPNLKGTKLGLAVPTYM--- 379
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
I + +I GIEPG + + + +L + L+ AS A + +
Sbjct: 380 --TDVNSIEDLTSQADQRITGIEPGAGIMTAAKNALKDYD-NLSSWELVAASTGAMTTSL 436
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
+ + P V +W PH + + ++ YL +E G E ++ T+ R PN+ +
Sbjct: 437 DQAIKKKDPIVVTAWSPHWMFAKYDLKYLKDSKETFGSAE-NINTIARKGLKKDLPNVYK 495
Query: 244 LLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
++ ++ +M I N + + + + + +W
Sbjct: 496 IIDKFHWTKKDMEAVMLDI-NKGMSPEAAAKKWVEANQSKVSSWTK 540
>gi|326794338|ref|YP_004312158.1| ABC-type glycine betaine transport, periplasmic subunit
[Marinomonas mediterranea MMB-1]
gi|326545102|gb|ADZ90322.1| ABC-type glycine betaine transport, periplasmic subunit
[Marinomonas mediterranea MMB-1]
Length = 334
Score = 192 bits (488), Expect = 5e-47, Method: Composition-based stats.
Identities = 57/340 (16%), Positives = 105/340 (30%), Gaps = 38/340 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M + + L + + S C V AD W + + ILE G +
Sbjct: 1 MKSKILLSLTIAMGASSAFAAHHECGKVTIADMNWNSASLIANIDQFILEHGYGCDAELV 60
Query: 61 LLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVND 118
T ++ DI W +L+ + ++EG +K+ ++L G + V
Sbjct: 61 PGDTMATGTSMIEKGQPDIAPELWSNALKDLLEKGVKEGRLKVAGKSLSDGGEEGFWVPS 120
Query: 119 VGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
IK ++ + + YG G ++ GF
Sbjct: 121 YLVEEHPEMATIEGVIKYAKEFPHPEDDSKHAFYGCPAGWNCQISAENLFRAMNLGDAGF 180
Query: 170 RLI-EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--------- 219
LI S I + W P + + + G +
Sbjct: 181 DLIDPGSGAGLSGSIAKAYERKEGWFGYYWAPTAVLGKYEMVKVDFGSGVDKEEFTSCTT 240
Query: 220 ----------GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDR 269
+ + V TV+ S DK P L F+ A N ++ + +N+ D
Sbjct: 241 QEDCLSPKPTMYPPSLVQTVITSSLADKAPEAYEYLSKRAFTNATMNGLLAWMEDNQADG 300
Query: 270 QFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMNN 309
++ + H DL +W+ D +L + ++N
Sbjct: 301 KYAAENFMFEHSDLWSDWVS-------ADVKAKLNKALDN 333
>gi|170726198|ref|YP_001760224.1| substrate-binding region of ABC-type glycine betaine transport
system [Shewanella woodyi ATCC 51908]
gi|169811545|gb|ACA86129.1| Substrate-binding region of ABC-type glycine betaine transport
system [Shewanella woodyi ATCC 51908]
Length = 334
Score = 192 bits (487), Expect = 6e-47, Method: Composition-based stats.
Identities = 53/340 (15%), Positives = 100/340 (29%), Gaps = 38/340 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M I+ L + C V AD W+ + + ILE G + +
Sbjct: 1 MRNIILAAGLLGSIFTQQVSAEGECGKVTIADMNWSSASLIANVDRFILEHGYGCEAELL 60
Query: 61 LLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVND 118
T ++ DI W S+++ I + E + + ++L G + V
Sbjct: 61 PGDTMPTSTSMIEKGEPDIAPEMWSNSVKELIEKAVSEKRLVIAGQSLSDGGEEGFWVPQ 120
Query: 119 VGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
I + + + YG G ++ S GF
Sbjct: 121 YMVDKDPSLQTIAGVIANVKSFKHPEDPERGAFYGCPAGWGCQLSAENLYRALNLSDAGF 180
Query: 170 RLI-EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIH------------------ 210
LI S I R P W P + +
Sbjct: 181 DLIDPGSGAGLAGSIARAYEREKPWFGYYWAPTAVLGKYKMVKVDFGTGVDVEHFKACTS 240
Query: 211 -YLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDR 269
+++ + +A V T+ SD+ K L F+ N ++ + +N+ D
Sbjct: 241 QAECADPKVTMYPKALVQTITTSDFTKKSSQGFDYLSKRAFTNEQMNGLLAWMEDNQADG 300
Query: 270 QFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMNN 309
L + D+ W+ D + ++++ + N
Sbjct: 301 DIAAEYFLTNYEDIWTQWVA-------ADVAAKVKQAIKN 333
>gi|298375043|ref|ZP_06985000.1| glycine betaine/L-proline ABC transporter,periplasmic
substrate-binding protein [Bacteroides sp. 3_1_19]
gi|298267543|gb|EFI09199.1| glycine betaine/L-proline ABC transporter,periplasmic
substrate-binding protein [Bacteroides sp. 3_1_19]
Length = 297
Score = 192 bits (487), Expect = 6e-47, Method: Composition-based stats.
Identities = 58/288 (20%), Positives = 110/288 (38%), Gaps = 9/288 (3%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M + L +I ++ S +R A W + A T + IL E GY+T +
Sbjct: 11 MRNRTILFTTLLAVTIFFSCGNISDKKIRIAYANWAEGIAVTYLAKEILSEQ-GYRTELL 69
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ F SL D+FM W P +G ++++ + A+ L V +
Sbjct: 70 NADIAPIFTSLARGKTDVFMDSWMPVTHADYFQKY-DGKLEILGQIYDSARIGLVVPEYV 128
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
I + +++ + + +I GI+ G + I +RL+ +S A
Sbjct: 129 P---IHTIEELGAHTQRFSGEIVGIDAGTGIMKCTEKAIPEYGLD---YRLMISSGPAMT 182
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ +++ V W PH + + L + G E ++++ R + + P
Sbjct: 183 ALLKKAIDKKEWIVVTGWTPHWMFDRFRLRVLEDSRNVYGEAE-QIHSIARKGFSKEHPF 241
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+ LL NI S + +M+ I R + H DL+ +W+
Sbjct: 242 AAALLGNIHLSDTEISSLMRAIEETSGTETRAVRQWMDGHRDLIDSWI 289
>gi|25011877|ref|NP_736272.1| hypothetical protein gbs1838 [Streptococcus agalactiae NEM316]
gi|77413910|ref|ZP_00790086.1| amino acid ABC transporter, permease protein [Streptococcus
agalactiae 515]
gi|24413418|emb|CAD47497.1| Unknown [Streptococcus agalactiae NEM316]
gi|77160043|gb|EAO71178.1| amino acid ABC transporter, permease protein [Streptococcus
agalactiae 515]
Length = 575
Score = 192 bits (487), Expect = 6e-47, Method: Composition-based stats.
Identities = 47/286 (16%), Positives = 105/286 (36%), Gaps = 11/286 (3%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
+ + + + V+ A W A+T + + +L+ GY + L
Sbjct: 301 LFILAALGRIVVNMTSGNEAKGQKVKIAYVQWDSEVASTNVIAEVLKSK-GYDVELTPLD 359
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
V ++++ N D W P + S+ + +++ K L V
Sbjct: 360 NAVMWQTVANGNADFTTSAWLPKTHGQYFNKY-KNSLDDLGPHVENVKIGLVVPKYM--- 415
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
+ I + + +I GIEPG + + + +L ++L+ AS A + +
Sbjct: 416 ---NVNSIEELSNQADKQITGIEPGAGIMKSAKQSLKDYP-NLSSWKLLSASTGAMTTTL 471
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
+ +N V W PH + + ++ YL ++ G GE + T+ R + P + +
Sbjct: 472 GKAIKNKDQVVITGWSPHWMFAKYDLKYLKDPKKSFG-GEEHINTIARKNLKKDMPKVYK 530
Query: 244 LLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
++ K++ +M + + + ++ H + W
Sbjct: 531 IIDKFKWTKEDMESIMLDMD-KGMEPAKAAQKWIKNHKKEVSEWTK 575
>gi|332364733|gb|EGJ42502.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Streptococcus sanguinis
SK1059]
Length = 574
Score = 192 bits (487), Expect = 7e-47, Method: Composition-based stats.
Identities = 57/292 (19%), Positives = 110/292 (37%), Gaps = 17/292 (5%)
Query: 2 YKILAVCLFLTTFSISYAR------DADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
KI+ ++ V A W A+T + + L+E +GY
Sbjct: 292 KKIMLWSALAAVILTAFVGNQVTKLQQSKKEKVNLAYVEWDSEVASTNVVAEALKE-IGY 350
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
I L V ++S+ N D + W P+ + ++ + + NL+G K L
Sbjct: 351 DVTITPLDNAVMWKSVANGEADAMVSAWLPTTHAALYEEYKD-KLVDLGPNLEGVKTGLV 409
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
V I + I GIEPG + +L G+ L +S
Sbjct: 410 VPSYM------DADSIEDLSDQAKKTITGIEPGAGIMTATEKTLQEYS-NLSGWNLSSSS 462
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYL 235
A + + + +N + W PH + S ++ YL + G G+ +++T+ R +
Sbjct: 463 TGAMTTALDQAIKNKEDIIVTGWSPHWMFSKYDLKYLKDPKGTMG-GKEAIHTITRKNLD 521
Query: 236 DKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
P ++++L N ++ E+M I N + + ++ H +++W
Sbjct: 522 KDLPEVNKVLDNFNWTQKDMEEVMLKI-NEGSSPEAAAKEWIKNHQKEVESW 572
>gi|160886480|ref|ZP_02067483.1| hypothetical protein BACOVA_04491 [Bacteroides ovatus ATCC 8483]
gi|156108365|gb|EDO10110.1| hypothetical protein BACOVA_04491 [Bacteroides ovatus ATCC 8483]
Length = 290
Score = 192 bits (487), Expect = 7e-47, Method: Composition-based stats.
Identities = 56/288 (19%), Positives = 112/288 (38%), Gaps = 8/288 (2%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+YKI+ + L S V+ A W + A + + V+LEE GY+ ++
Sbjct: 5 IYKIVGIVLSAMLLLASCTNSDLEKKKVKIAYANWLEGIAMSHLAKVVLEEH-GYEVELQ 63
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ F S+ K D+F+ W P K + I+ + E A+ L V
Sbjct: 64 NADLAPIFVSMSGKKSDVFLDAWLPITMKDYMDQYGDS-IEFLGEVYGEARVGLVVPQYV 122
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
I+S ++ K ++I GI+ G + I G+ L+ +S
Sbjct: 123 ---TIQSINELEANKDRFSSEIVGIDAGAGIMKTTDKAIAAYGLD--GYTLMTSSSSTML 177
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ +++ V W PH + ++ +L +++ G ++ + + +K P
Sbjct: 178 ASLKKAMDKGEWIVITGWTPHWMFDQFDLKFLDDPKKVYGD-LEEIHAIAWKGFSEKDPF 236
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+ NIK + + M + + + D + + R H L+ +W+
Sbjct: 237 AAEFFGNIKLTTEELSSFMTAMKDARMDEEEIARKWRDEHRLLVDSWI 284
>gi|332363182|gb|EGJ40967.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Streptococcus sanguinis
SK49]
Length = 574
Score = 191 bits (486), Expect = 8e-47, Method: Composition-based stats.
Identities = 57/292 (19%), Positives = 110/292 (37%), Gaps = 17/292 (5%)
Query: 2 YKILAVCLFLTTFSISYAR------DADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
KI+ ++ V A W A+T + + L+E +GY
Sbjct: 292 KKIMLWSALAAVILTAFVGNQVTKLQQSKKEKVNLAYVEWDSEVASTNVVAEALKE-MGY 350
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
I L V ++S+ N D + W P+ + ++ + + NL+G K L
Sbjct: 351 DVTITPLDNAVMWKSVANGEADAMVSAWLPTTHAALYKEYKD-KLVDLGPNLEGVKTGLV 409
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
V I + I GIEPG + +L G+ L +S
Sbjct: 410 VPSYM------DADSIEDLSDQAKKTITGIEPGAGIMTATEKTMQEYS-NLSGWNLSSSS 462
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYL 235
A + + + +N + W PH + S ++ YL + G G+ +++T+ R +
Sbjct: 463 TGAMTTALDQAIKNKEDIIVTGWSPHWMFSKYDLKYLKDPKGTMG-GKEAIHTMTRKNLD 521
Query: 236 DKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
P ++++L N ++ E+M I N + + ++ H +++W
Sbjct: 522 KDLPEVNKVLDNFNWTQKDMEEVMLKI-NEGSSPEAAAKEWIKNHQKEVESW 572
>gi|257056602|ref|YP_003134434.1| ABC-type proline/glycine betaine transport system, periplasmic
component [Saccharomonospora viridis DSM 43017]
gi|256586474|gb|ACU97607.1| ABC-type proline/glycine betaine transport system, periplasmic
component [Saccharomonospora viridis DSM 43017]
Length = 301
Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats.
Identities = 86/288 (29%), Positives = 142/288 (49%), Gaps = 3/288 (1%)
Query: 17 SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGI 76
+ + + VR W D+ + S +L LGY+ + L+VP+ ++L N
Sbjct: 15 GFQDNDSTEDEVRLVQQPWEDLIVENEIVSQVL-SRLGYRARVHELSVPLGAQALANGQA 73
Query: 77 DIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYK 135
D ++G W+PS YL EG I++ + + GA+Y V D G++S D+A+
Sbjct: 74 DAYLGNWWPSQRPVYQQYLREGRIEVASTMVTGAQYAPVVPDYVVREHGVRSLADLAEKA 133
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
+I GIEPG GNQ ILD I ++ + L + L+++S A S++ R P VF
Sbjct: 134 HLFDHEILGIEPGTPGNQYILDAIRDDSYGLGDWSLVQSSTAAMLSEVERRTSERKPVVF 193
Query: 196 LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
L W PH +N + N+HYL + I G + V D+ +K P+I++ L I+
Sbjct: 194 LGWSPHWMNVEWNLHYLDDPQGIWP-GSGEIRVVFNEDFAEKNPDIAKFLSQIRIDRDTA 252
Query: 256 NEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQL 303
++ + + K + + +R HPD ++ WL GV T DG+ S +
Sbjct: 253 SDWIHRLSKEKVPAKQIAHEWIRAHPDEVRTWLRGVRTADGEPASAAI 300
>gi|229085577|ref|ZP_04217812.1| Glycine betaine-binding protein [Bacillus cereus Rock3-44]
gi|228697725|gb|EEL50475.1| Glycine betaine-binding protein [Bacillus cereus Rock3-44]
Length = 298
Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats.
Identities = 67/294 (22%), Positives = 125/294 (42%), Gaps = 13/294 (4%)
Query: 1 MYK---ILAVCLFLTTFSISY-ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
M + ++++ LF++ S A +A++ ++ T W + AT M V+LEE GYK
Sbjct: 14 MKRKIWLISILLFISMIMTSCNATNANTKGKIKLGVTSWKENIATANMWKVLLEEQ-GYK 72
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ L + + +D + W P +K + + I L ++ +G L V
Sbjct: 73 VELMYLEKAAIWTGVARGDVDANLEVWLPVTDKPLNNRY-KNDIVLKSKWYEGTGLGLVV 131
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
I S +D+ ++ E KI GIEPG+ + L +L+++SE
Sbjct: 132 PSY--MKDINSIEDLNAHQNEFDNKIVGIEPGSSLMNLTDKAMKEYNIKL---KLVQSSE 186
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
A S++++ P W PH S+ ++ YL +++ G + +Y VR +
Sbjct: 187 AAMMSELKKAYTQKKPIAVTLWNPHWGFSEFDLKYLKDPKKVYGEKD-DIYYSVRKGFEK 245
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIG 290
P I + K + +M +LN +D + R + + L+ W+ G
Sbjct: 246 DYPEIVKYFDRWKMNDEQLGTLMV-MLNKTKDPEEAARKWIEKNQALVDQWIKG 298
>gi|327468560|gb|EGF14039.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Streptococcus sanguinis
SK330]
Length = 574
Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats.
Identities = 57/291 (19%), Positives = 111/291 (38%), Gaps = 17/291 (5%)
Query: 3 KILAVCLFLTTFSISYAR------DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
KI+ + ++ V A W A+T + + L+E +GY
Sbjct: 293 KIMLWSALVAVILTAFVGNQVTKLQQSKKEKVNLAYVEWDSEVASTNVVAEALKE-MGYD 351
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
I L V ++S+ N D + W P+ + ++ + + NL+G K L V
Sbjct: 352 VTITPLDNAVMWKSVANGEADAMVSAWLPTTHAALYEEYKD-KLVDLGPNLEGVKTGLVV 410
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
I + I GIEPG + +L G+ L +S
Sbjct: 411 PSYM------DVDSIEDLSDQAKKTITGIEPGAGIMTATEKTMQEYS-NLSGWNLSSSST 463
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
A + + + +N + W PH + S ++ YL + G G+ +++T+ R +
Sbjct: 464 GAMTTALDQAIKNKEDIIVTGWSPHWMFSKYDLKYLKDPKGTMG-GKEAIHTITRKNLDK 522
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
P ++++L N ++ E+M I N + + ++ H +++W
Sbjct: 523 DLPEVNKVLDNFNWTQKDMEEVMLKI-NEGSSPEAAAKEWIKNHQKEVESW 572
>gi|254455186|ref|ZP_05068621.1| ABC transporter, substrate binding protein (glycine betaine)
[Octadecabacter antarcticus 238]
gi|198263596|gb|EDY87868.1| ABC transporter, substrate binding protein (glycine betaine)
[Octadecabacter antarcticus 238]
Length = 269
Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats.
Identities = 98/269 (36%), Positives = 157/269 (58%), Gaps = 5/269 (1%)
Query: 41 TTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSI 100
TT + SV+LE LGY T +L +PV + S+ +D+F+GYW P++E + Y E G I
Sbjct: 2 TTGVASVVLE-GLGYTTESYVLGIPVIYESMVGGDLDVFLGYWDPAMESYFQAYREAGDI 60
Query: 101 KLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN 160
+ V +NL+GAK+ AV + G+ + D+A + + G ++YGIEPG N +L ++
Sbjct: 61 ETVHQNLEGAKFTFAVPKYVYDAGVTDFADLATHADKFGRQMYGIEPG--SNDIMLGIVE 118
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS- 219
+ F L G++++E+SE +Q++R+ R VFL W PHP+N+ +I YL GG+
Sbjct: 119 ADAFGLSGWKVVESSEQGMLAQVKRNARGEEWIVFLGWAPHPMNTSFDIEYLTGGDNHYG 178
Query: 220 -GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLR 278
FG A+V+T VR YL++CPN+ +LL + F V +E+ M IL++ D + G +L+
Sbjct: 179 PNFGGATVHTQVRKGYLEECPNVGKLLTQMTFDVPMESAGMAYILDDGNDPKEAGARLLK 238
Query: 279 THPDLLKNWLIGVTTFDGQDPSRQLERFM 307
P L+ WL GV DG + + +
Sbjct: 239 EQPQYLEAWLDGVEAKDGGNGLDAVRAHL 267
>gi|190894927|ref|YP_001985220.1| putative glycine betaine/L-proline ABC transporter
substrate-binding protein [Rhizobium etli CIAT 652]
gi|190700588|gb|ACE94670.1| probable glycine betaine/L-proline ABC transporter,
substrate-binding protein [Rhizobium etli CIAT 652]
Length = 333
Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats.
Identities = 54/340 (15%), Positives = 96/340 (28%), Gaps = 40/340 (11%)
Query: 1 MYKILAV-CLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M K+LA CL + A C V A W + + IL E G +I
Sbjct: 1 MKKLLASTCLTFGLLGGASFASAAECGSVTIASMNWQSAEVLSNLDKFILNEGYGCSADI 60
Query: 60 KLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAVN 117
+ P + DI W L + EEG I V G +
Sbjct: 61 TVGDTVPTITSMAEKGQPDIAPEAWIDLLPDVVKKGTEEGRIVQVGSPLPDGGVQGWWIP 120
Query: 118 DVGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
+K + + I G G + G
Sbjct: 121 KYLADAHPDIKTIGDVLKHPELFPDPEDPKKGAIVNGPQGWGGTVVTSQLYKAFGAEKAG 180
Query: 169 FRLIE-ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIH----------------- 210
F L++ S I + V W P + +
Sbjct: 181 FTLVDTGSAAGLDGSIAKAYERKEGWVGYYWAPTALLGKYQMVKLEAGVPEDAAEWKRCI 240
Query: 211 --YLPGGEEISGFGEASVYTVVRSDYLDK-CPNISRLLKNIKFSVALENEMMKLILNNKQ 267
+ + + V T+V + +K P + LK +S N++M + +N+
Sbjct: 241 TVADCPDPKPASWPVDHVVTLVAKPFSEKVGPEVMDYLKKRSWSNDTVNKLMSWMTDNQA 300
Query: 268 DRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ + L+ + D+ W+ + + ++E +
Sbjct: 301 TGEDGAKHFLKENKDIWTKWVS-------PEAAAKIEAAL 333
>gi|327459433|gb|EGF05779.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Streptococcus sanguinis
SK1]
Length = 574
Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats.
Identities = 57/292 (19%), Positives = 110/292 (37%), Gaps = 17/292 (5%)
Query: 2 YKILAVCLFLTTFSISYAR------DADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
KI+ ++ V A W A+T + + L+E +GY
Sbjct: 292 KKIMLWSALAAVILTAFVGNQVTKLQQSKKEKVNLAYVEWDSEVASTNVVAEALKE-MGY 350
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
I L V ++S+ N D + W P+ + ++ + + NL+G K L
Sbjct: 351 DVTITPLDNAVMWKSVANGEADAMVSAWLPTTHASLYEEYKD-KLVDLGPNLEGVKTGLV 409
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
V I + I GIEPG + +L G+ L +S
Sbjct: 410 VPSYM------DADSIEDLSDQAKKTITGIEPGAGIMTATEKTMQEYS-NLSGWNLSSSS 462
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYL 235
A + + + +N + W PH + S ++ YL + G G+ +++T+ R +
Sbjct: 463 TGAMTTALDQAIKNKEDIIVTGWSPHWMFSKYDLKYLKDSKGTMG-GKEAIHTITRKNLD 521
Query: 236 DKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
P ++++L N ++ E+M I N + + ++ H +++W
Sbjct: 522 KDLPEVNKVLDNFNWTQKDMEEVMLKI-NEGSSPEAAAKEWIKNHQKEVESW 572
>gi|323353440|ref|ZP_08087973.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Streptococcus sanguinis
VMC66]
gi|322121386|gb|EFX93149.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Streptococcus sanguinis
VMC66]
Length = 574
Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats.
Identities = 57/291 (19%), Positives = 110/291 (37%), Gaps = 17/291 (5%)
Query: 3 KILAVCLFLTTFSISYAR------DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
KI+ ++ V A W A+T + + L+E +GY
Sbjct: 293 KIMLWSALAAVILTAFVGNQVTKLQQSKKEKVNLAYVEWDSEVASTNVIAEALKE-MGYD 351
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
I L V ++S+ N D + W P+ + ++ + + NL+G K L V
Sbjct: 352 VTITPLDNAVMWKSVANGEADAMVSAWLPTTHAALYKEYKD-KLVDLGPNLEGVKTGLVV 410
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
I + I GIEPG + +L G+ L +S
Sbjct: 411 PSYM------DADSIEDLSDQAKKTITGIEPGAGIMTATEKTMQEYS-NLSGWNLSSSST 463
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
A + + + +N + W PH + S ++ YL + G G+ +++T+ R +
Sbjct: 464 GAMTTALDQAIKNKEDIIVTGWSPHWMFSKYDLKYLKDPKGTMG-GKEAIHTITRKNLDK 522
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
P ++++L N ++ E+M I N + + ++ H +++W
Sbjct: 523 DLPEVNKVLDNFNWTQKDMEEVMLKI-NEGSSPEAAAKEWIKNHQKEVESW 572
>gi|87120681|ref|ZP_01076574.1| hypothetical ABC transporter, substrate binding protein
[Marinomonas sp. MED121]
gi|86163909|gb|EAQ65181.1| hypothetical ABC transporter, substrate binding protein
[Marinomonas sp. MED121]
Length = 331
Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats.
Identities = 51/339 (15%), Positives = 104/339 (30%), Gaps = 39/339 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M+K V + S + ADSC V AD W + + ILEE G + +
Sbjct: 1 MHKQTFVAGAMVLLSSASFA-ADSCGQVTIADMNWNSASLMANIDKYILEEGYGCEIELI 59
Query: 61 LLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVND 118
T ++ D+ W ++ + +++ ++ +L G + V
Sbjct: 60 PGDTMPTGASMIEKGEPDVAPEMWSNAMRDALQKGVDDKRLRFAGSSLSDGGEEGFWVPK 119
Query: 119 VGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
+ +K+ Q + + +Y G ++ GF
Sbjct: 120 YLVEMDSSLATIDGILKNPQLFKHPEDDSLGALYSCPAGWNCQISTQNLYVALGMEEAGF 179
Query: 170 RLI-EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI---------- 218
+I S I R + W P + + + G I
Sbjct: 180 DIIDPGSSAGLSGSIARAYERGQGWLGYYWAPTAVLGKYEMVKVDFGSGIDEEHFTTCLT 239
Query: 219 ---------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDR 269
S + A V T+ + + P F+ N ++ + N+ D
Sbjct: 240 QEDCLDPRPSMWPPAPVKTMTTESFATREPAAYDYFTKRSFTNNKMNVLLAWMEFNQADG 299
Query: 270 QFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
+ L+ + ++ NW+ D + +++ +N
Sbjct: 300 EIAAEYFLKNNEEMWTNWVS-------ADVAAKIKASLN 331
>gi|218897811|ref|YP_002446222.1| putative glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Bacillus cereus
G9842]
gi|228901327|ref|ZP_04065520.1| Glycine betaine-binding protein [Bacillus thuringiensis IBL 4222]
gi|218545883|gb|ACK98277.1| putative glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Bacillus cereus
G9842]
gi|228858305|gb|EEN02772.1| Glycine betaine-binding protein [Bacillus thuringiensis IBL 4222]
Length = 285
Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats.
Identities = 70/291 (24%), Positives = 125/291 (42%), Gaps = 12/291 (4%)
Query: 2 YKILAVCLFL---TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
KI +CL L F+ A +A+S ++ T W + AT M V+LEE GYK
Sbjct: 3 KKIWFICLALFITMIFTSCNATNANSKGKIKLGVTSWKENIATANMWKVLLEEK-GYKVE 61
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ L + + +D + W P +K + ++ I L ++ +G L V
Sbjct: 62 LMYLEKAAIWTGVARGDVDANLEVWLPVTDKPLNDRYKD-DIVLKSKWYEGTGLGLVVPS 120
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
I S +D+ +K EL KI GIEPG+ + L +L+++SE A
Sbjct: 121 YV--KNINSIEDLNAHKDELDNKIVGIEPGSSLMNLTNKAMKEYDIKL---KLVQSSEAA 175
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
S++++ P W PH S+ ++ YL +++ G + +Y VR +
Sbjct: 176 MMSELKKAYTKKKPIAVTLWNPHWGFSEFDLKYLKDPKKVYGEKD-DIYYSVRKGFEKDH 234
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
P++ + K + +M +LN +D + R ++ + L+ W+
Sbjct: 235 PDVIKYFDKWKMTDEQLGTLMV-MLNKTKDPEEAARKWIKKNQALVDEWVK 284
>gi|325688426|gb|EGD30444.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Streptococcus sanguinis
SK72]
Length = 574
Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats.
Identities = 57/291 (19%), Positives = 110/291 (37%), Gaps = 17/291 (5%)
Query: 3 KILAVCLFLTTFSISYAR------DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
KI+ ++ V A W A+T + + L+E +GY
Sbjct: 293 KIMLWSALAAVILTAFVGNQVTKLQQSKKEKVNLAYVEWDSEVASTNVIAEALKE-MGYD 351
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
I L V ++S+ N D + W P+ + ++ + + NL+G K L V
Sbjct: 352 VTITPLDNAVMWKSVANGEADAMVSAWLPTTHAALYKEYKD-KLVDLGPNLEGVKTGLVV 410
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
I + I GIEPG + +L G+ L +S
Sbjct: 411 PSYM------DADSIEDLSDQAKKTITGIEPGAGIMTATEKTMQEYS-NLSGWNLSSSST 463
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
A + + + +N + W PH + S ++ YL + G G+ +++T+ R +
Sbjct: 464 GAMTTALDQAIKNKEDIIVTGWSPHWMFSKYDLKYLKDPKGTMG-GKEAIHTITRKNLDK 522
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
P ++++L N ++ E+M I N + + ++ H +++W
Sbjct: 523 DLPEVNKVLDNFNWTQKDMEEVMLKI-NEGSSPEAAAKEWIKNHQKEVESW 572
>gi|158522773|ref|YP_001530643.1| substrate-binding region of ABC-type glycine betaine transport
system [Desulfococcus oleovorans Hxd3]
gi|158511599|gb|ABW68566.1| Substrate-binding region of ABC-type glycine betaine transport
system [Desulfococcus oleovorans Hxd3]
Length = 284
Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats.
Identities = 51/289 (17%), Positives = 102/289 (35%), Gaps = 8/289 (2%)
Query: 1 MYKILAVCLFLTTFSISYARDADSC-TPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M ++L++ + L A + W+ A+ + +LE +GY +
Sbjct: 1 MKRMLSILIVLALGMALGLGPATAKDKTAEIVYVEWSCATASANVVKAVLETKMGYDVEL 60
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
++ +++L +D W P+ + + ++ + NL G + L V
Sbjct: 61 TPVSAAAMWQALATGDVDACTTAWLPTTHGHYYDKV-KNKVENLGHNLVGTRIGLVVPAY 119
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
I S +++ + +I GI+PG + I K L+E S
Sbjct: 120 V---TIDSIEELDANADKFDGQITGIDPGAGIMSKTEAAIKAYKMKKM--ELMEGSGAMM 174
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+ +N V W PH ++ YL I G G+ + T+VR P
Sbjct: 175 TMVLSDKIKNKEWVVVTGWTPHWKFGRWDLKYLEDPLGIYG-GDEYIDTIVRKGLKKDKP 233
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
++ L +++ +M + ++ +PD + WL
Sbjct: 234 DLYAFLDRFEWTPEDIQTVMAWNQEKGTTPEENAVKWVKQNPDKVAAWL 282
>gi|253571896|ref|ZP_04849301.1| glycine betaine-binding protein [Bacteroides sp. 1_1_6]
gi|298387518|ref|ZP_06997070.1| glycine betaine/L-proline ABC transporter,periplasmic
substrate-binding protein [Bacteroides sp. 1_1_14]
gi|251838493|gb|EES66579.1| glycine betaine-binding protein [Bacteroides sp. 1_1_6]
gi|298259725|gb|EFI02597.1| glycine betaine/L-proline ABC transporter,periplasmic
substrate-binding protein [Bacteroides sp. 1_1_14]
Length = 286
Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats.
Identities = 56/288 (19%), Positives = 115/288 (39%), Gaps = 9/288 (3%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+ I A+ + + D + A W++ A T + I E+ GY +
Sbjct: 4 IKMIAAMFIAGILLTFVSCGDNGKSKKISIAYANWSEGIAMTNLAKAIFEDQ-GYDVKLL 62
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ F S+ K D+FM W P + + ++++ + GA+ L V D
Sbjct: 63 NADLAPIFTSISRKKADVFMDVWMPVTMEDYMKQYGD-KLEVIGDIYDGARIGLVVPDYV 121
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
I S +++ K+ +I GI+ G + I + ++L+ +S A
Sbjct: 122 ---TINSIEELNAEKERFSGQIVGIDAGAGIMKATDQAIKDYGLD---YKLMTSSGPAMT 175
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ +++ V W PH + + L + I G E+ ++T+ + +K P
Sbjct: 176 ASLKKAIDKKDWIVVTGWTPHWMFDRFKLKVLQDPKLIYGNTES-IHTIAWKGFSEKDPF 234
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+ LL NI+ + A + +M + + + R + H +L+ +W+
Sbjct: 235 AAELLGNIRLTDAEISSLMTALEEAQTTERQAARQWMEEHQELVNSWI 282
>gi|150377010|ref|YP_001313606.1| substrate-binding region of ABC-type glycine betaine transport
system [Sinorhizobium medicae WSM419]
gi|150031557|gb|ABR63673.1| Substrate-binding region of ABC-type glycine betaine transport
system [Sinorhizobium medicae WSM419]
Length = 333
Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats.
Identities = 50/340 (14%), Positives = 98/340 (28%), Gaps = 40/340 (11%)
Query: 1 MYKILAV-CLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M K+LA CL L + + A +A C V A W + + IL E G I
Sbjct: 1 MNKLLASTCLMLCLTAGASASNAAECGSVTIASMNWQSAEVLSNLDKFILNEGYGCSAEI 60
Query: 60 KLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAVN 117
+ P + DI W L + ++G I V G +
Sbjct: 61 TIGDTVPTITSMAEKGQPDIAPEAWIDLLPDVVKKGQDDGRIVTVGSPLPDGGVQGWWIP 120
Query: 118 DVGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
+K + + + G G + N G
Sbjct: 121 KYLADAHPDIKTIGDALKHPELFPAPEDSSKGALLNGPQGWGGTVVTTQLFNAFDGEKAG 180
Query: 169 FRLIE-ASELASFSQIRRDQRNNIPAVFLSWEPHPI-------------------NSDLN 208
F LI+ S I + W P + N
Sbjct: 181 FTLIDTGSAAGLDGAIAKAYERKEGLFTYYWSPTALLGKYEMVKLEPGVPHDSAEWKRCN 240
Query: 209 IHYLPGGEEISGFGEASVYTVVRSDYLDK-CPNISRLLKNIKFSVALENEMMKLILNNKQ 267
+ + + ++ T+V + ++ P + L +S +++M + +N+
Sbjct: 241 TVADCPDPKPNAWPVDTIVTLVAKPFSERVGPEVMDYLTKRSWSNETVSKLMAWMTDNQA 300
Query: 268 DRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ + L + D+ W+ + + +++ +
Sbjct: 301 SGEEGAKRFLEENQDMWSKWVS-------PEAAEKIKAAL 333
>gi|325689416|gb|EGD31421.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Streptococcus sanguinis
SK115]
Length = 574
Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats.
Identities = 57/291 (19%), Positives = 111/291 (38%), Gaps = 17/291 (5%)
Query: 3 KILAVCLFLTTFSISYAR------DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
KI+ ++ + V A W A+T + + L+E +GY
Sbjct: 293 KIMLWSALAAVILTAFVGNQVTKLQQNKKEKVNLAYVEWDSEVASTNVVAEALKE-MGYD 351
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
I L V ++S+ N D + W P+ + ++ + + NL+G K L V
Sbjct: 352 VTITPLDNAVMWKSVSNGEADAMVSAWLPTTHAALYEEYKD-KLVDLGPNLEGVKTGLVV 410
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
I + I GIEPG + +L G+ L +S
Sbjct: 411 PSYM------DADSIEDLSDQAKKTITGIEPGAGIMTATEKTMQEYS-NLSGWNLSSSST 463
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
A + + + +N + W PH + S ++ YL + G G+ +++T+ R +
Sbjct: 464 GAMTTALDQAIKNKEDIIVTGWSPHWMFSKYDLKYLKDPKGTMG-GKEAIHTMTRKNLEK 522
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
P ++++L N ++ E+M I N + + ++ H +++W
Sbjct: 523 DLPEVNKVLDNFNWTQKDMEEVMLKI-NEGSSPEAAAKEWIKNHQKEVESW 572
>gi|188585517|ref|YP_001917062.1| Substrate-binding region of ABC-type glycine betaine transport
system [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179350204|gb|ACB84474.1| Substrate-binding region of ABC-type glycine betaine transport
system [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 317
Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats.
Identities = 80/279 (28%), Positives = 133/279 (47%), Gaps = 2/279 (0%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPS 86
V W + T + S ILE LGY+ NI A+PV L +D+F G W+ +
Sbjct: 38 EVELPIVEWPGVTQKTHVVSEILES-LGYQVNINQYALPVILEGLSEGDLDVFTGTWFQT 96
Query: 87 LEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE 146
+ L +GS+ V+ L+ Y AV + G+ S D+++Y +E YG+E
Sbjct: 97 WGTPLKNKLADGSVVHVSTQLEDTNYGPAVPYYVYEAGVTSLADLSEYSEEFNHTYYGLE 156
Query: 147 PGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSD 206
GN+GNQ ++D +NN + L ++++E+S A ++ N VF WEPH +N
Sbjct: 157 SGNDGNQIMIDAFDNNIYDLGDWKIVESSTAAMIQHVQNYMNNEEWIVFSGWEPHWMNVV 216
Query: 207 LNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNK 266
L++ YL E I G + V T+ R D PN+ + + + +++E +
Sbjct: 217 LDMRYLDDPEGIWGE-DEKVGTIARKGLKDDDPNLYKFFEQFDINNEIQSEWIYEYSRKN 275
Query: 267 QDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLER 305
+ V + + + DL+ W+ GV T DG+D L+
Sbjct: 276 RSPNVVAKEWVSENLDLVLEWVDGVHTVDGRDAGEVLKE 314
>gi|258405180|ref|YP_003197922.1| Substrate-binding region of ABC-type glycine betaine transport
system [Desulfohalobium retbaense DSM 5692]
gi|257797407|gb|ACV68344.1| Substrate-binding region of ABC-type glycine betaine transport
system [Desulfohalobium retbaense DSM 5692]
Length = 305
Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats.
Identities = 65/297 (21%), Positives = 120/297 (40%), Gaps = 18/297 (6%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP 65
V L ++ A TPV A W+ A+T + +++E L I ++
Sbjct: 12 LVLTLLVVAGVARTSSAGHETPVTLAYVEWSSEVASTNLVKAVIQEKLDRPCRIVAMSAD 71
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG----- 120
+R++ +D + W P + EG + + NL+G + L V V
Sbjct: 72 EMWRAVAQGSVDGMVSAWLPGTQSEYLQ-RYEGQVIDLGPNLEGTRIGLVVPKVTTGRQT 130
Query: 121 --------FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ + S ++ +Y + KI GI+P R + + + L+
Sbjct: 131 AGSGLENEPYIPVTSIAELPEYADKFDGKIIGIDPEAGIMHRTEEALRAYGL--HNYTLV 188
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRS 232
SE+A +++ R V WEPH + + + +L +E+ G G +++TVVRS
Sbjct: 189 SGSEVAMTAELADAIRKRQWVVVTGWEPHWMFARWRLAFLDDPKEVFG-GREAIHTVVRS 247
Query: 233 DYLDKCPNISRLLKNIKFSVALENEMMKLILN-NKQDRQFVGRTMLRTHPDLLKNWL 288
D + P++ R L N +++ ++M I R +R H D + +WL
Sbjct: 248 DLREDMPDVYRFLDNFQWTSEDMEQLMLWIEERKGVYPYESARRWIRYHKDQVASWL 304
>gi|257867410|ref|ZP_05647063.1| glycine betaine/L-proline ABC transporter [Enterococcus
casseliflavus EC30]
gi|257873741|ref|ZP_05653394.1| glycine betaine/L-proline ABC transporter [Enterococcus
casseliflavus EC10]
gi|257877492|ref|ZP_05657145.1| glycine betaine/L-proline ABC transporter [Enterococcus
casseliflavus EC20]
gi|257801466|gb|EEV30396.1| glycine betaine/L-proline ABC transporter [Enterococcus
casseliflavus EC30]
gi|257807905|gb|EEV36727.1| glycine betaine/L-proline ABC transporter [Enterococcus
casseliflavus EC10]
gi|257811658|gb|EEV40478.1| glycine betaine/L-proline ABC transporter [Enterococcus
casseliflavus EC20]
Length = 574
Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats.
Identities = 61/273 (22%), Positives = 110/273 (40%), Gaps = 11/273 (4%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNK 74
S ++ +DS V A W A+T + + +L + +GY+ N L + + S+
Sbjct: 311 SFAFGNVSDSKGTVNLAYVEWDTEVASTHVVAEVLSQ-MGYEVNTTPLDNAIMWESVAKG 369
Query: 75 GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKY 134
+D + W PS + ++ ++ + NL+GAK + V IA
Sbjct: 370 EVDGMVAAWLPSTHQSQYEQYQD-QVENLGPNLEGAKLGIVVPSYM------DVDSIADL 422
Query: 135 KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAV 194
E G I GIEPG + + +L + + +S A + + +N V
Sbjct: 423 SDEAGKTITGIEPGAGVVNAAENTVATYD-NLSDWNVATSSSGAMTVALGQAIKNQDEIV 481
Query: 195 FLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVAL 254
W PH + + ++ YL E G E+ + TVVR D P + +L ++
Sbjct: 482 ITGWSPHWMFAKYDLKYLDDPEGTMGEAES-INTVVRQGLADDMPEVYEVLDRFNWTQED 540
Query: 255 ENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
E+M I N+ + + + HP+ + W
Sbjct: 541 MEEVMLAI-NDGTSAEDAAKDWVANHPEEVAAW 572
>gi|332358183|gb|EGJ36013.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Streptococcus sanguinis
SK1056]
Length = 574
Score = 190 bits (481), Expect = 3e-46, Method: Composition-based stats.
Identities = 56/292 (19%), Positives = 110/292 (37%), Gaps = 17/292 (5%)
Query: 2 YKILAVCLFLTTFSISYAR------DADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
KI+ ++ V A W A+T + + L+E +GY
Sbjct: 292 KKIMLWSALAAVIMTAFVGNQVTKLQQSKKEKVNLAYVEWDSEVASTNVVAEALKE-MGY 350
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
I L V ++S+ N D + W P+ + ++ + + NL+G K L
Sbjct: 351 DVTITPLDNAVMWKSVANSEADAMVSAWLPTTHAALYEEYKD-KLVDLGPNLEGVKTGLV 409
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
+ I + I GIEPG + +L G+ L +S
Sbjct: 410 IPSYM------DADSIEDLSDQAKKTITGIEPGAGIMTATEKTMQEYS-NLSGWNLSSSS 462
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYL 235
A + + + +N + W PH + S ++ YL + G G+ +++T+ R +
Sbjct: 463 TGAMTTALDQAIKNKEDIIVTGWSPHWMFSKYDLKYLKDPKGTMG-GKEAIHTITRKNLD 521
Query: 236 DKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
P ++++L N ++ E+M I N + + ++ H +++W
Sbjct: 522 KDLPEVNKVLDNFNWTQKDMEEVMLKI-NEGSSPEAAAKEWIKNHQKEVESW 572
>gi|327193202|gb|EGE60108.1| putative glycine betaine/L-proline ABC transporter,
substrate-binding protein [Rhizobium etli CNPAF512]
Length = 333
Score = 190 bits (481), Expect = 3e-46, Method: Composition-based stats.
Identities = 54/340 (15%), Positives = 95/340 (27%), Gaps = 40/340 (11%)
Query: 1 MYKILAV-CLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M K+LA CL + A C V A W + + IL E G +I
Sbjct: 1 MKKLLASTCLTFGLLGGASFASAAECGSVTIASMNWQSAEVLSNLDKFILNEGYGCSADI 60
Query: 60 KLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAVN 117
+ P + DI W L + EEG I V G +
Sbjct: 61 TVGDTVPTITSMAEKGQPDIAPEAWIDLLPDVVKKGTEEGRIVQVGSPLPDGGVQGWWIP 120
Query: 118 DVGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
+K + + I G G + G
Sbjct: 121 KYLADAHPDIKTIGDVLKHPELFPDPEDPKKGAIVNGPQGWGGTVVTSQLYKAFGAEKAG 180
Query: 169 FRLIE-ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIH----------------- 210
F L++ S I + V W P + +
Sbjct: 181 FTLVDTGSAAGLDGSIAKAYERKEGWVGYYWAPTALLGKYQMVKLEAGVPEDAAEWKRCI 240
Query: 211 --YLPGGEEISGFGEASVYTVVRSDYLDK-CPNISRLLKNIKFSVALENEMMKLILNNKQ 267
+ + + V T+V + +K P + LK +S N++M + +N+
Sbjct: 241 TVADCPDPKPASWPVDHVVTLVAKPFSEKVGPEVMDYLKKRSWSNDTVNKLMSWMTDNQA 300
Query: 268 DRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ + L + D+ W+ + + ++E +
Sbjct: 301 TGEDGAKHFLEENKDIWTKWVS-------PEAAAKIEAAL 333
>gi|195977325|ref|YP_002122569.1| glycine betaine transport system permease protein OpuAB
[Streptococcus equi subsp. zooepidemicus MGCS10565]
gi|195974030|gb|ACG61556.1| glycine betaine transport system permease protein OpuAB
[Streptococcus equi subsp. zooepidemicus MGCS10565]
Length = 576
Score = 190 bits (481), Expect = 3e-46, Method: Composition-based stats.
Identities = 57/294 (19%), Positives = 107/294 (36%), Gaps = 18/294 (6%)
Query: 2 YKILAVCLFLTTFSIS--------YARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL 53
K L + + + +D V A W A+T + + +L +
Sbjct: 290 KKWLGLAALAVFLLSALGRGFAAMSSSSSDKGQKVTIAYVQWDSEVASTHVIAQVLRDE- 348
Query: 54 GYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
GY+ + L V ++++ N D W P + + + + NL+G K
Sbjct: 349 GYQVTLTPLDNAVMWQTIANGDADFSTSAWLPVTHQQQYQKYQ-DKLDNLGPNLKGTKLG 407
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
LAV I + + +I GIEPG +L + LI
Sbjct: 408 LAVPAYMSD-----VNSIEELSDQANQQIIGIEPGAGIMTAADKTQRAYS-NLADWELIA 461
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
AS A + + + + P V +W PH I + ++ YL ++ G E ++ T+ R
Sbjct: 462 ASTGAMTTSLDQAIKKKEPIVVTAWSPHWIFAKYDLKYLADPKKTFGSKE-NINTIARKG 520
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
P + R++ + ++ +M I N + + + +H D + W
Sbjct: 521 LKADLPAVHRIVDHFYWTQEDMEAVMLDI-NQGMTPEAAAKKWVASHADKVAKW 573
>gi|108759018|ref|YP_630472.1| glycine betaine/L-proline ABC transporterperiplasmic
substrate-binding protein [Myxococcus xanthus DK 1622]
gi|108462898|gb|ABF88083.1| glycine betaine/L-proline ABC transporter,periplasmic
substrate-binding protein [Myxococcus xanthus DK 1622]
Length = 309
Score = 190 bits (481), Expect = 3e-46, Method: Composition-based stats.
Identities = 60/276 (21%), Positives = 108/276 (39%), Gaps = 8/276 (2%)
Query: 13 TFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLK 72
+ A VR W + A T + ILE+ +GY+ + V F SL
Sbjct: 39 AAGDTEAPAPAKKPVVRLVYVNWAEGVAMTHLVQAILEDRMGYEVKTTMADVAPVFASLA 98
Query: 73 NKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIA 132
N D F+ W P + +G + + N + A+ L V L I S + +
Sbjct: 99 NGDADAFLDGWLPVTHQSYME-RFQGKVVDLGTNYEDARIGLVVP---ADLDITSIEQLN 154
Query: 133 KYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIP 192
K+L I GI+ G I K L +L+ +S A ++++ P
Sbjct: 155 GKAKDLNQSIVGIDSGAGIMTTTEKAIAEYKLDL---KLVPSSGPAMTAELKDAIAKKRP 211
Query: 193 AVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSV 252
V W+PH + ++ +L + + G E+ ++T+ R P+++ LL+N K
Sbjct: 212 VVVTGWKPHWKFARWDLKFLDDPKGVYGAKES-IHTLTRVGLEKDLPDVATLLRNFKLDD 270
Query: 253 ALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+M I + + R ++ + L+ W+
Sbjct: 271 QQLGSLMGAIAEAEDAPEKATREWVKKNQALVDGWI 306
>gi|261251604|ref|ZP_05944178.1| putative periplasmic substrate-binding protein [Vibrio orientalis
CIP 102891]
gi|260938477|gb|EEX94465.1| putative periplasmic substrate-binding protein [Vibrio orientalis
CIP 102891]
Length = 329
Score = 190 bits (481), Expect = 3e-46, Method: Composition-based stats.
Identities = 49/338 (14%), Positives = 103/338 (30%), Gaps = 40/338 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M L LT + ++ AD C V AD W + ILE G + +
Sbjct: 1 MK--LKTAAILTLSATAFQAQADECGKVTIADMNWNSATVIANVDRFILEHGYGCEAELI 58
Query: 61 LLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVND 118
T ++ D+ W SL+ + + E ++ ++L G + V
Sbjct: 59 PGDTMPTGTSMIEKGQPDVAPELWSNSLKDALDKGVAEKRLRYAGKSLVDGGEEGFWVPK 118
Query: 119 VG--FALGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNNKFSLKGF 169
+ + + + K+ K Y G + N GF
Sbjct: 119 YLVNKYPELATIEGVKKHSKLFEHPEDPDNSAFYSCPAGWNCQISAGHLFNALALGESGF 178
Query: 170 RLI-EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--------- 219
++ S I + W P + + + G +
Sbjct: 179 TIVDPGSSAGLSGAIAKAYEREEAWFGYYWAPTAVLGKYEMVKVDFGSGVDEAEFVGCTT 238
Query: 220 ----------GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDR 269
+ + V+T+ ++ + P F+ A N+++ + +N+ D
Sbjct: 239 QPECAEPKPTMYPPSPVHTITTEEFASRAPQAYEYFAKRGFTNADMNQLLAWMEDNQADG 298
Query: 270 QFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ L +P + W+ QD + ++++ +
Sbjct: 299 EEAMFHFLEKYPQIWTAWVP-------QDVADKVKQAL 329
>gi|222082373|ref|YP_002541738.1| amino acid ABC transporter [Agrobacterium radiobacter K84]
gi|221727052|gb|ACM30141.1| amino acid ABC transporter [Agrobacterium radiobacter K84]
Length = 333
Score = 189 bits (480), Expect = 4e-46, Method: Composition-based stats.
Identities = 50/340 (14%), Positives = 99/340 (29%), Gaps = 40/340 (11%)
Query: 1 MYKILAVCLFLTTFSISYA-RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M K+LA + ++ + A C V A W + + +IL E G + I
Sbjct: 1 MKKLLASTILISGLLGGASFASAAECGSVTIASMNWQSAEVLSNLDKIILNEGYGCQAEI 60
Query: 60 KLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAVN 117
+ P + DI W L + EEG I V G +
Sbjct: 61 TVGDTVPTITSMAEKGQPDIAPEAWVDLLPDVVKKGTEEGKIVAVGSPLPDGGNQGWWIP 120
Query: 118 DVGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
+K + + I+ G G + G
Sbjct: 121 KYLADAHPDIKTIPDLLKHPELFPDPEDPSKGAIFNGPQGWGGTVVTSQLYKAFGAEKAG 180
Query: 169 FRLIE-ASELASFSQIRRDQRNNIPAVFLSWEPHPI-------------------NSDLN 208
F L++ S I + + V W P + N
Sbjct: 181 FTLVDTGSAAGLDGSIAKAYESKKAWVGYYWAPTALLGKYPMVKLEAGVPADAAEWKRCN 240
Query: 209 IHYLPGGEEISGFGEASVYTVVRSDYLDKC-PNISRLLKNIKFSVALENEMMKLILNNKQ 267
+ + + + T+ + +K P + L +S N++M + +N+
Sbjct: 241 TVADCPDPKPNAWPIDKIVTLTAKPFSEKAGPEVMDYLAKRSWSNETVNKLMAWMTDNQA 300
Query: 268 DRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ + L+ + D+ W+ + ++++E +
Sbjct: 301 SGEDGAKHFLKENKDVWTKWVS-------PEAAKKIEAAL 333
>gi|303246589|ref|ZP_07332867.1| Substrate-binding region of ABC-type glycine betaine transport
system [Desulfovibrio fructosovorans JJ]
gi|302491929|gb|EFL51807.1| Substrate-binding region of ABC-type glycine betaine transport
system [Desulfovibrio fructosovorans JJ]
Length = 285
Score = 189 bits (480), Expect = 4e-46, Method: Composition-based stats.
Identities = 64/293 (21%), Positives = 117/293 (39%), Gaps = 13/293 (4%)
Query: 1 MYK-----ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M K I A + + A S V+ A W A+T + +LEE L
Sbjct: 1 MKKTAWYVIAATLVSVAAVLWGTPAPAASKDTVKLAYVEWACATASTNLVKAVLEEKLHK 60
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
K I ++ ++++ + +D + W P +++ I + ++GAK L
Sbjct: 61 KVEILPVSAAAMWQAVASGDVDGMVTAWLPVTHGNYLKKVKD-KIVNLGVIIRGAKIGLV 119
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
V D I S D+ K + KI GI+PG + I + KG++L+E S
Sbjct: 120 VPDYV---TIDSIADLEGAKDKFNGKIIGIDPGAGIMSKTEAAIKDYGL--KGYKLVEGS 174
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYL 235
+ + + ++ V W PH + ++ YL + + G G+ ++ +VR
Sbjct: 175 DATMTAALADAVKHKKWIVITGWTPHWMFGRFHLKYLKDPKGVFG-GDETIDAIVRKGLK 233
Query: 236 DKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+ P + L K S++ +M N + + + HP L+ +WL
Sbjct: 234 EDKPEVYAFLSKYKLSMSDLQALMAANKENGK-PYENAKKFIAEHPKLVDSWL 285
>gi|327490635|gb|EGF22416.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Streptococcus sanguinis
SK1058]
Length = 574
Score = 189 bits (480), Expect = 4e-46, Method: Composition-based stats.
Identities = 57/291 (19%), Positives = 110/291 (37%), Gaps = 17/291 (5%)
Query: 3 KILAVCLFLTTFSISYAR------DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
KI+ ++ V A W A+T + + L+E +GY
Sbjct: 293 KIMLWSALAAVILTAFVGNQVTKLQQSKKEKVNLAYVEWDSEVASTNVVAEALKE-MGYD 351
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
I L V ++S+ N D + W P+ + ++ + + NL+G K L V
Sbjct: 352 VTITPLDNAVMWKSVANGEADAMVSAWLPTTHAALYEEYKD-KLVDLGPNLEGVKTGLVV 410
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
I + I GIEPG + +L G+ L +S
Sbjct: 411 PSYM------DANSIEDLSDQAKKTITGIEPGAGIMTATEKTMQEYS-NLSGWNLSSSST 463
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
A + + + +N + W PH + S ++ YL + G G+ +++T+ R +
Sbjct: 464 GAMTTALDQAIKNKEDIIVTGWSPHWMFSKYDLKYLKDPKGTMG-GKEAIHTITRRNLDK 522
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
P ++++L N ++ E+M I N + + ++ H +++W
Sbjct: 523 DLPEVNKVLDNFNWTQKDMEEVMLKI-NEGSSPEAAAKEWIKNHQKEVESW 572
>gi|327472840|gb|EGF18267.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Streptococcus sanguinis
SK408]
Length = 574
Score = 189 bits (480), Expect = 4e-46, Method: Composition-based stats.
Identities = 57/291 (19%), Positives = 111/291 (38%), Gaps = 17/291 (5%)
Query: 3 KILAVCLFLTTFSISYAR------DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
KI+ ++ V A W A+T + + L+E +GY
Sbjct: 293 KIMLWSALAAVILTAFVGNQVTKLQQSKKEKVNLAYVEWDSEVASTNVVAEALKE-MGYD 351
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
I L V ++S+ N D + W P+ + ++ + + NL+G K L V
Sbjct: 352 VTITPLDNAVMWKSVANGEADAMVSAWLPTTHAALYEEYKD-KLVDLGPNLEGVKTGLVV 410
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
I ++ I GIEPG + +L G+ L +S
Sbjct: 411 PSYM------DADSIEDLSEQAKKTITGIEPGAGIMTATEKTMQEYS-NLSGWNLSSSST 463
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
A + + + +N + W PH + S ++ YL + G G+ +++T+ R +
Sbjct: 464 GAMTTALDQAIKNKEDIIVTGWSPHWMFSKYDLKYLKDPKGTMG-GKEAIHTMTRKNLDK 522
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
P ++++L N ++ E+M I N + + ++ H +++W
Sbjct: 523 DLPEVNKVLDNFNWTQKDMEEVMLKI-NEGSSPEAAAKEWIKNHQKEVESW 572
>gi|150006772|ref|YP_001301515.1| glycine betaine-binding protein [Parabacteroides distasonis ATCC
8503]
gi|149935196|gb|ABR41893.1| glycine betaine-binding protein precursor [Parabacteroides
distasonis ATCC 8503]
Length = 297
Score = 189 bits (480), Expect = 4e-46, Method: Composition-based stats.
Identities = 63/289 (21%), Positives = 114/289 (39%), Gaps = 13/289 (4%)
Query: 1 MYK---ILAVCLFLTTF-SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
M + I+ C+ L T I D+ + A W + A T + VILEE GY+
Sbjct: 1 MRRFTIIIGCCMLLVTLQFIFSCVDSKDRKKISIAYANWAEGIAMTNLAKVILEEQ-GYR 59
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+K + F S+ + D+FM W P + ++ + + AK L V
Sbjct: 60 VTLKNADIAPIFTSVASGKADVFMDAWLPVTHADYMEQYGD-RLETLGTVYEHAKLGLVV 118
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ I+S +D+ +K + +I GI+ G + + F L +S
Sbjct: 119 PEYV---TIRSIEDLNAHKDQFKGEIIGIDAGAGLMNSADKAVQDYSLD---FDLKSSSG 172
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
+ +++ N V W PH + S + +L +E G E + + + +
Sbjct: 173 ATMVAFLKKSIDANEWIVVTGWTPHWMFSRYPLKFLEDPKEEFGDSE-HIEVIATKGFSE 231
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLK 285
K P + KN K + +E+M + + + R L HP+++K
Sbjct: 232 KDPYAASFFKNFKLTDEQLSELMYYMEDGTRTESRSARAWLEKHPEIIK 280
>gi|324990295|gb|EGC22233.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Streptococcus sanguinis
SK353]
Length = 574
Score = 189 bits (480), Expect = 4e-46, Method: Composition-based stats.
Identities = 56/291 (19%), Positives = 111/291 (38%), Gaps = 17/291 (5%)
Query: 3 KILAVCLFLTTFSISYAR------DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
KI+ ++ + V A W A+T + + L+E +GY
Sbjct: 293 KIMLWSALAAVILTAFVGNQVTKLQQNKKEKVNLAYVEWDSEVASTNVVAEALKE-MGYD 351
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
I L V ++S+ N D + W P+ + ++ + + NL+G K L V
Sbjct: 352 VTITPLDNAVMWKSVANGEADAMVSAWLPTTHAALYEEYKD-KLVDLGPNLEGVKTGLVV 410
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
I + I GIEPG + +L G+ L +S
Sbjct: 411 PSYM------DADSIEDLSDQAKKTITGIEPGAGIMTATEKTMQEYS-NLSGWNLSSSST 463
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
A + + + ++ + W PH + S ++ YL + G G+ +++T+ R +
Sbjct: 464 GAMTTALDQAIKDKEDIIVTGWSPHWMFSKYDLKYLKDPKGTMG-GKEAIHTMTRKNLDK 522
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
P ++++L N ++ E+M I N + + ++ H +++W
Sbjct: 523 DLPEVNKVLDNFNWTQKDMEEVMLKI-NEGSSPEAAAKEWIKNHQKEVESW 572
>gi|125717254|ref|YP_001034387.1| glycine/betaine ABC transporter permease [Streptococcus sanguinis
SK36]
gi|125497171|gb|ABN43837.1| ABC transporter, glycine-betaine/proline permease protein, putative
[Streptococcus sanguinis SK36]
Length = 574
Score = 189 bits (480), Expect = 4e-46, Method: Composition-based stats.
Identities = 56/291 (19%), Positives = 111/291 (38%), Gaps = 17/291 (5%)
Query: 3 KILAVCLFLTTFSISYAR------DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
K++ F ++ V A W A+T + + L+E +GY
Sbjct: 293 KVMLWSALAAVFLTAFVGNQVTKLQQSKKEKVNLAYVEWDSEVASTNVVAEALKE-MGYD 351
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
I L V ++S+ N D + W P+ + ++ + + NL+G K L V
Sbjct: 352 VTITPLDNAVMWKSVANGEADAMVSAWLPTTHAALYEEYKD-KLVDLGPNLEGVKTGLVV 410
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
I + I GIEPG + +L G+ L +S
Sbjct: 411 PSYM------DADSIEDLSDQAKKTITGIEPGAGIMTATEKTMQEYS-NLSGWNLSSSST 463
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
A + + + ++ + W PH + S ++ YL + G G+ +++T+ R +
Sbjct: 464 GAMTTALDQAIKDKEDIIVTGWSPHWMFSKYDLKYLKDPKGTMG-GKEAIHTITRKNLDK 522
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
P ++++L N ++ E+M I N + + ++ H +++W
Sbjct: 523 DLPEVNKVLDNFNWTQKDMEEVMLKI-NEGSSPEAAAKEWIKNHQKEVESW 572
>gi|47569051|ref|ZP_00239741.1| amino acid ABC transporter, permease protein [Bacillus cereus
G9241]
gi|47554320|gb|EAL12681.1| amino acid ABC transporter, permease protein [Bacillus cereus
G9241]
Length = 285
Score = 189 bits (480), Expect = 4e-46, Method: Composition-based stats.
Identities = 69/291 (23%), Positives = 124/291 (42%), Gaps = 12/291 (4%)
Query: 2 YKILAVCLFL---TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
KI +CL L F+ A +A+S ++ T W + AT M V+LE+ GYK
Sbjct: 3 KKIWLICLALFITMIFTSCNATNANSKGKIKLGVTSWKENIATANMWKVLLEQK-GYKVE 61
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ L + + +D + W P +K + ++ I L ++ +G L V
Sbjct: 62 LMYLEKAAIWTGVARGDVDANLEVWLPVTDKPLNDRYKD-DIVLKSKWYEGTGLGLVVPS 120
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
I + +D+ +K EL KI GIEPG+ + L +L+++SE A
Sbjct: 121 Y--MKNINNIEDLNAHKDELDNKIVGIEPGSSLMNLTNKAMKEYDIKL---KLVQSSEAA 175
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
S++++ P W PH S+ ++ YL +++ G + +Y VR +
Sbjct: 176 MMSELKKAYTKKKPIAVTLWNPHWGFSEFDLKYLKDPKKVYGEKD-DIYYSVRKGFEKDH 234
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
P+I + K + +M LN +D + R ++ + L+ W+
Sbjct: 235 PDIIKYFDKWKINDEQLGTLMVE-LNKTKDPEEAARKWIKNNQALVDEWVK 284
>gi|151327597|gb|ABR92967.1| ABC-type transport system substrate-binding subunit [Halobacillus
dabanensis]
Length = 295
Score = 189 bits (480), Expect = 4e-46, Method: Composition-based stats.
Identities = 64/303 (21%), Positives = 116/303 (38%), Gaps = 22/303 (7%)
Query: 1 MYK-------ILAVCLFLTTFSISYA-------RDADSCTPVRFADTGWTDIAATTAMTS 46
M K ILA+ + + A + V W + A T M
Sbjct: 1 MKKCKKVLSSILAILMISVLTACGNANGESKSEQSDSDTESVTIGQINWAENIAVTNMWK 60
Query: 47 VILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAEN 106
VILE+ GY + L + T R+L+N +D + W P + ++ A
Sbjct: 61 VILEDE-GYNVELNNLNMGSTMRALENGDLDASLEIWLPVQDANYLDKYQDTVNFSDATW 119
Query: 107 LQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSL 166
AK L V + S +D+ ++K+ ++I G +PG + +I + L
Sbjct: 120 YDNAKVGLVVPSYVEE--VNSVEDLNEHKELFNSEIVGFDPGAGTMEVTEQLIKDYNLEL 177
Query: 167 KGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV 226
L+ +SE A ++I + P V W PH I S ++ ++ + G G +
Sbjct: 178 ---ELLPSSESAMLAEIGNAVKEEEPIVAPLWSPHWIFSKYDLKFIEDPQNTFG-GVEKI 233
Query: 227 YTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKN 286
+ R + ++ P IS KN K ++++ + +D + + DL+
Sbjct: 234 HHATRQGFEEEYPEISEWFKNWKMDDQQIGKLIEYV-EGSEDPLDGAEKWVEENQDLIDE 292
Query: 287 WLI 289
W+
Sbjct: 293 WVK 295
>gi|255015583|ref|ZP_05287709.1| glycine betaine-binding protein precursor [Bacteroides sp. 2_1_7]
Length = 297
Score = 189 bits (480), Expect = 4e-46, Method: Composition-based stats.
Identities = 59/288 (20%), Positives = 110/288 (38%), Gaps = 9/288 (3%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M + L +I ++ S +R A W + A T + IL E GY+T +
Sbjct: 11 MRDRTILFTALMAITIFFSCGNISDKKIRIAYANWAEGIAVTYLAKEILSEQ-GYRTELL 69
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ F SL D+FM W P +G ++++ + A+ L V +
Sbjct: 70 NADIAPIFTSLARGKTDVFMDSWMPVTHADYFRKY-DGKLEILGQIYDSARIGLVVPEYV 128
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
I + +++ + + +I GI+ G + I +RL+ +S A
Sbjct: 129 P---IHTIEELGAHTRRFSGEIVGIDAGTGIMKCTEKAIPEYGLD---YRLMISSGPAMT 182
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ +++ V W PH + + L + G E ++++ R + + P
Sbjct: 183 ALLKKAIDKKEWIVVTGWTPHWMFDRFRLRVLEDSRNVYGEAE-QIHSIARKGFSKEHPF 241
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+ LL NI S N +M+ I R + H DL+ +W+
Sbjct: 242 AAALLGNIHLSDTEINSLMRAIEETSGTETRAIRQWMDGHRDLIDSWI 289
>gi|229030469|ref|ZP_04186508.1| Glycine betaine-binding protein [Bacillus cereus AH1271]
gi|228730840|gb|EEL81781.1| Glycine betaine-binding protein [Bacillus cereus AH1271]
Length = 285
Score = 189 bits (480), Expect = 5e-46, Method: Composition-based stats.
Identities = 71/291 (24%), Positives = 123/291 (42%), Gaps = 12/291 (4%)
Query: 2 YKILAVCLFL---TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
KI +CL L FS A +A+S ++ T W + AT M V+LE+ GYK
Sbjct: 3 KKIWLICLALFITMIFSSCNATNANSKGKIKLGVTSWKENIATANMWKVLLEQK-GYKVE 61
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ L + + +D + W P +K + + I L ++ +G L V
Sbjct: 62 LMYLEKAAIWTGVARGDVDANLEVWLPVTDKPL-NARYKDDIVLKSKWYEGTGLGLVVPS 120
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
I S +D+ +K EL KI GIEPG+ + L +L+++SE A
Sbjct: 121 YV--KNINSIEDLNAHKDELDNKIVGIEPGSSLMNLTNKAMKEYDIKL---KLVQSSEAA 175
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
S++++ P W PH S+ ++ YL +++ G + +Y VR +
Sbjct: 176 MMSELKKAYTKKKPIAVTLWNPHWGFSEFDLKYLKDPKKVYGEKD-DIYYSVRKGFEKDH 234
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
P+I + K + +M +LN +D + R + + L+ W+
Sbjct: 235 PDIVKYFDKWKMNDEQLGTLMV-MLNKTKDPEEAARKWIEKNQALVDEWVK 284
>gi|255010824|ref|ZP_05282950.1| glycine betaine-binding protein precursor [Bacteroides fragilis
3_1_12]
gi|313148626|ref|ZP_07810819.1| glycine betaine-binding protein [Bacteroides fragilis 3_1_12]
gi|313137393|gb|EFR54753.1| glycine betaine-binding protein [Bacteroides fragilis 3_1_12]
Length = 285
Score = 189 bits (480), Expect = 5e-46, Method: Composition-based stats.
Identities = 62/290 (21%), Positives = 119/290 (41%), Gaps = 10/290 (3%)
Query: 1 MYK--ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K I+ L L + + A W + A + + V+LEE GY+
Sbjct: 1 MRKYRIIGSLLLLLAVMCTACNPDTGKKKISIAYANWLEGIAMSHLAKVVLEEQ-GYEVE 59
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ V F S+ + D+FM W P K + I+ + E A+ L V
Sbjct: 60 LLNADVAPIFASVSRRKADVFMDAWLPVTMKDYMGQYGD-QIEFIGEVYDSARVGLVVPQ 118
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
I S ++A +K + ++I GI+ G + I + + G++L+ +S
Sbjct: 119 YVS---IDSIGELASHKGQFSSEIVGIDAGAGIMKTTDKAIADYRLD--GYKLLTSSSST 173
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+ +++ V W PH + + +L + G E+ +Y V + +K
Sbjct: 174 MLASLQKAMDKESWIVITGWTPHWMFDRYPLKFLHDPKGTYGNVES-IYVVGWKGFTEKD 232
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
P ++ NIKF+ + +MK + + + D + + R H +L+++W+
Sbjct: 233 PFAAKFFSNIKFTTEEISSLMKALKDARMDEEDLVRKWRDEHRELIESWI 282
>gi|262384805|ref|ZP_06077937.1| glycine betaine-binding protein [Bacteroides sp. 2_1_33B]
gi|298377734|ref|ZP_06987685.1| glycine betaine-binding protein [Bacteroides sp. 3_1_19]
gi|301309037|ref|ZP_07214982.1| glycine betaine-binding protein [Bacteroides sp. 20_3]
gi|262293521|gb|EEY81457.1| glycine betaine-binding protein [Bacteroides sp. 2_1_33B]
gi|298265437|gb|EFI07099.1| glycine betaine-binding protein [Bacteroides sp. 3_1_19]
gi|300833063|gb|EFK63688.1| glycine betaine-binding protein [Bacteroides sp. 20_3]
Length = 297
Score = 189 bits (479), Expect = 5e-46, Method: Composition-based stats.
Identities = 62/289 (21%), Positives = 114/289 (39%), Gaps = 13/289 (4%)
Query: 1 MYK---ILAVCLFLTTF-SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
M + I+ C+ L T I D+ + A W + A T + VILE+ GY+
Sbjct: 1 MRRFTIIIGCCMLLVTLQFIFSCVDSKDRKKISIAYANWAEGIAMTNLAKVILEDQ-GYR 59
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+K + F S+ + D+FM W P + ++ + + AK L V
Sbjct: 60 VTLKNADIAPIFTSVASGKADVFMDAWLPVTHADYMEQYGD-RLETLGTVYEHAKLGLVV 118
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ I+S +D+ +K + +I GI+ G + + F L +S
Sbjct: 119 PEYV---TIRSIEDLNAHKDQFKGEIIGIDAGAGLMNSADKAVQDYSLD---FDLKSSSG 172
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
+ +++ N V W PH + S + +L +E G E + + + +
Sbjct: 173 ATMVAFLKKSIDANEWIVVTGWTPHWMFSRYPLKFLEDPKEEFGDSE-HIEVIATKGFSE 231
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLK 285
K P + KN K + +E+M + + + R L HP+++K
Sbjct: 232 KDPYAASFFKNFKLTDEQLSELMYYMEDGTRTESRSARAWLEKHPEIIK 280
>gi|150395874|ref|YP_001326341.1| substrate-binding region of ABC-type glycine betaine transport
system [Sinorhizobium medicae WSM419]
gi|150027389|gb|ABR59506.1| Substrate-binding region of ABC-type glycine betaine transport
system [Sinorhizobium medicae WSM419]
Length = 332
Score = 189 bits (479), Expect = 5e-46, Method: Composition-based stats.
Identities = 55/339 (16%), Positives = 100/339 (29%), Gaps = 39/339 (11%)
Query: 1 MYKILAV-CLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M K+LA CL + A C V A+ W ++ IL E G ++
Sbjct: 1 MKKLLATTCLAAGLLGLGSTASAAECGDVTIANMNWQSAEVLASVDKFILTEGYGCNADL 60
Query: 60 KLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVN 117
+ P ++ DI W L + LEEG + A L GA V
Sbjct: 61 VVGDTVPTITSMIEKGEPDIAPEGWVDLLPDVVNRGLEEGKLVGAAVALSDGAVQGWWVP 120
Query: 118 DVGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
+K + I+ G G + G
Sbjct: 121 KYIVDANPDIKTIDDVLKHKDLFPDPEDPSKGAIFNGPQGWGGTVVTTQLYKAYGAEQAG 180
Query: 169 FRLIE-ASELASFSQIRRDQRNNIPAVFLSWEPHPI-------------------NSDLN 208
F L++ S I + V W P + N
Sbjct: 181 FTLVDTGSAAGLDGSIAKAYERKQGWVGYYWAPTALLGKYEMVKLGHGVPNDMAEWKRCN 240
Query: 209 IHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQD 268
+ + + + V T+V ++ D+ L ++ N++M + +N+
Sbjct: 241 TVADCPDPKKNDWPKDKVQTLVTKEFADRAGPAMEYLNTRAWTNDTVNKLMAWMTDNQAS 300
Query: 269 RQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ + L +PDL W+ + + +++ +
Sbjct: 301 GEEGAKHFLEENPDLWTKWVS-------PEVAEKIKSAL 332
>gi|325568907|ref|ZP_08145200.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Enterococcus
casseliflavus ATCC 12755]
gi|325157945|gb|EGC70101.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Enterococcus
casseliflavus ATCC 12755]
Length = 574
Score = 189 bits (479), Expect = 5e-46, Method: Composition-based stats.
Identities = 61/273 (22%), Positives = 110/273 (40%), Gaps = 11/273 (4%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNK 74
S ++ +DS V A W A+T + + +L + +GY+ N L + + S+
Sbjct: 311 SFAFGNVSDSKGTVNLAYVEWDTEVASTHVVAEVLLQ-MGYEVNTTPLDNAIMWESVAKG 369
Query: 75 GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKY 134
+D + W PS + ++ ++ + NL+GAK + V IA
Sbjct: 370 EVDGMVAAWLPSTHQSQYEQYQD-QVENLGPNLEGAKLGIVVPSYM------DVDSIADL 422
Query: 135 KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAV 194
E G I GIEPG + + +L + + +S A + + +N V
Sbjct: 423 SDEAGKTITGIEPGAGVVNAAENTVATYD-NLSDWNVATSSSGAMTVALGQAIKNQDEIV 481
Query: 195 FLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVAL 254
W PH + + ++ YL E G E+ + TVVR D P + +L ++
Sbjct: 482 ITGWSPHWMFAKYDLKYLDDPEGTMGEAES-INTVVRQGLADDMPEVYEVLDRFNWTQED 540
Query: 255 ENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
E+M I N+ + + + HP+ + W
Sbjct: 541 MEEVMLAI-NDGTSAEDAAKDWVANHPEEVAAW 572
>gi|229097303|ref|ZP_04228265.1| Glycine betaine-binding protein [Bacillus cereus Rock3-29]
gi|229103391|ref|ZP_04234073.1| Glycine betaine-binding protein [Bacillus cereus Rock3-28]
gi|229116299|ref|ZP_04245689.1| Glycine betaine-binding protein [Bacillus cereus Rock1-3]
gi|228667131|gb|EEL22583.1| Glycine betaine-binding protein [Bacillus cereus Rock1-3]
gi|228679887|gb|EEL34082.1| Glycine betaine-binding protein [Bacillus cereus Rock3-28]
gi|228686114|gb|EEL40030.1| Glycine betaine-binding protein [Bacillus cereus Rock3-29]
Length = 285
Score = 189 bits (479), Expect = 5e-46, Method: Composition-based stats.
Identities = 70/291 (24%), Positives = 123/291 (42%), Gaps = 12/291 (4%)
Query: 2 YKILAVCLFL---TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
KI +CL L F+ A +A+S ++ T W + AT M V+LE+ GYK
Sbjct: 3 KKIWLICLALFITMIFTSCNATNANSKGKIKLGVTSWKENIATANMWKVLLEQK-GYKVE 61
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ L + + +D + W P +K + + I L ++ +G L V
Sbjct: 62 LMYLEKAAIWTGVARGDVDANLEVWLPVTDKPLND-RYKNDIVLKSKWYEGTGLGLVVPS 120
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
I S +D+ +K EL KI GIEPG+ + L +L+++SE A
Sbjct: 121 YL--KNINSIEDLNAHKDELDNKIVGIEPGSSLMNLTNKAMKEYDIKL---KLVQSSEAA 175
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
S++++ P W PH S+ ++ YL +++ G + +Y VR +
Sbjct: 176 MMSELKKAYTKKKPIAVTLWNPHWGFSEFDLKYLKDPKKVYGEKD-DIYYSVRKGFEKDH 234
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
P+I + K + +M +LN +D + R + + L+ W+
Sbjct: 235 PDIVKYFDKWKMNDEQLGTLMV-MLNKTKDPEEAARKWIEKNQSLVDEWIK 284
>gi|217960229|ref|YP_002338789.1| putative glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Bacillus cereus
AH187]
gi|229139425|ref|ZP_04267996.1| Glycine betaine-binding protein [Bacillus cereus BDRD-ST26]
gi|229196960|ref|ZP_04323700.1| Glycine betaine-binding protein [Bacillus cereus m1293]
gi|217064994|gb|ACJ79244.1| putative glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Bacillus cereus
AH187]
gi|228586517|gb|EEK44595.1| Glycine betaine-binding protein [Bacillus cereus m1293]
gi|228643972|gb|EEL00233.1| Glycine betaine-binding protein [Bacillus cereus BDRD-ST26]
Length = 285
Score = 189 bits (479), Expect = 5e-46, Method: Composition-based stats.
Identities = 71/291 (24%), Positives = 124/291 (42%), Gaps = 12/291 (4%)
Query: 2 YKILAVCLFL---TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
KI +CL L FS A +A+S ++ T W + AT M V+LE+ GYK
Sbjct: 3 KKIWLICLALFITMIFSSCNATNANSKGKIKLGVTSWKENIATANMWKVLLEQK-GYKVE 61
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ L + + +D + W P +K + ++ I L ++ +G L V
Sbjct: 62 LMYLEKAAIWTGVARGDVDANLEVWLPVTDKPLNDRYKD-DIVLKSKWYEGTGLGLVVPS 120
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
I S +D+ +K EL KI GIEPG+ + L +L+++SE A
Sbjct: 121 YV--KNINSIEDLNAHKDELDNKIVGIEPGSSLMNLTNKAMKEYDIKL---KLVQSSEAA 175
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
S++++ P W PH S+ ++ YL +++ G + +Y VR +
Sbjct: 176 LMSELKKAYTKKKPIAVTLWNPHWGFSEFDLKYLKDPKKVYGEKD-DIYYSVRKGFEKDH 234
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
P+I + K + +M LN +D + R ++ + L+ W+
Sbjct: 235 PDIIKYFDKWKMNDEQLGTLMVE-LNKTKDPEEAARKWIKKNQALVDEWIK 284
>gi|325693734|gb|EGD35653.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Streptococcus sanguinis
SK150]
Length = 574
Score = 189 bits (479), Expect = 5e-46, Method: Composition-based stats.
Identities = 58/291 (19%), Positives = 110/291 (37%), Gaps = 17/291 (5%)
Query: 3 KILAVCLFLTTFSISYAR------DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
KI+ ++ V A W A+T + + L+E +GY
Sbjct: 293 KIMLWSALAAVILTAFVGNQVTKLQQSKKEKVNLAYVEWDSEVASTNVVAEALKE-MGYD 351
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
I L V ++S+ N D + W P+ + ++ + + NL+G K L V
Sbjct: 352 VTITPLDNAVMWKSVANGEADAMVSAWLPTTHAALYEEYKD-KLVDLGPNLEGVKTGLVV 410
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
I + I GIEPG + +L G+ L +S
Sbjct: 411 PSYM------DADSIEDLSDQAKKTITGIEPGAGIMTATEKTMQEYS-NLSGWNLSSSST 463
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
A + + + +N + W PH + S ++ YL + G G+ +++T+ R +
Sbjct: 464 GAMTTALDQAIKNKEDIIVTGWSPHWMFSKYDLKYLKDPKGTMG-GKEAIHTMTRKNLDK 522
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
P ++++L N ++ E+M I N + + ++ H ++NW
Sbjct: 523 DLPEVNKVLNNFNWTQKDMEEVMLKI-NEGSSPEAAAKEWIKNHQKEVENW 572
>gi|116249180|ref|YP_765021.1| putative substrate-binding component of ABC transporter [Rhizobium
leguminosarum bv. viciae 3841]
gi|115253830|emb|CAK12225.1| putative substrate-binding component of ABC transporter [Rhizobium
leguminosarum bv. viciae 3841]
Length = 333
Score = 189 bits (479), Expect = 5e-46, Method: Composition-based stats.
Identities = 53/340 (15%), Positives = 95/340 (27%), Gaps = 40/340 (11%)
Query: 1 MYKILAV-CLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M K+ A CL + A C V A W + + IL E G + I
Sbjct: 1 MKKLFASTCLMFGLIGGASFASAAECGTVTIASMNWQSAEVLSNLDKFILNEGYGCEAEI 60
Query: 60 KLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAVN 117
+ P + DI W L + EEG I V G +
Sbjct: 61 TVGDTVPTITSMAEKGQPDIAPEAWIDLLPDVVKKGTEEGRIVQVGSPLPDGGVQGWWIP 120
Query: 118 DVGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
+K + + IY G G + + G
Sbjct: 121 KYLADAHPDIKTIGDVLKHPELFPDPEDSKKGAIYNGPQGWGGTVVTTQLYKAFEADKAG 180
Query: 169 FRLIE-ASELASFSQIRRDQRNNIPAVFLSWEPHPI-------------------NSDLN 208
F L++ S I + W P + N
Sbjct: 181 FTLVDTGSAAGLDGSISKAYERKEGWAGYYWAPTALLGKYEMVKLEAGVPNDAAEWKRCN 240
Query: 209 IHYLPGGEEISGFGEASVYTVVRSDYLDK-CPNISRLLKNIKFSVALENEMMKLILNNKQ 267
+ + + + T+V + +K P + L +S N++M + +N+
Sbjct: 241 TVADCPDPKPNAWPVDKIVTLVAKPFSEKVGPEVMDYLTKRSWSNDTVNKLMAWMTDNQA 300
Query: 268 DRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ + L+ + DL W+ + + ++E +
Sbjct: 301 TGEDGAKHFLKENKDLWSKWVS-------PEAATKIEAAL 333
>gi|52142723|ref|YP_084106.1| glycine betaine-binding protein [Bacillus cereus E33L]
gi|51976192|gb|AAU17742.1| glycine betaine-binding protein [Bacillus cereus E33L]
Length = 285
Score = 189 bits (479), Expect = 5e-46, Method: Composition-based stats.
Identities = 70/291 (24%), Positives = 124/291 (42%), Gaps = 12/291 (4%)
Query: 2 YKILAVCLFL---TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
KI +CL L F+ A +A+S ++ T W + AT M V+LE+ GYK
Sbjct: 3 KKIWFICLALFITMIFTSCNATNANSKGKIKLGVTSWKENIATANMWKVLLEQK-GYKVE 61
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ L + + +D + W P +K + ++ I L ++ +G L V
Sbjct: 62 LMYLEKAAIWTGVARGDVDANLEVWLPVTDKPLNDRYKDH-IVLKSKWYEGTGLGLVVPS 120
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
I S +D+ +K EL KI GIEPG+ + L +L+++SE A
Sbjct: 121 YV--KNINSIEDLNAHKDELDNKIVGIEPGSSLMNLTNKAMKQYDIKL---KLVQSSEAA 175
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
S++++ P W PH S+ ++ YL +++ G + +Y VR +
Sbjct: 176 MMSELKKAYTKKKPIAVTLWNPHWGFSEFDLKYLKDPKKVYGEKD-DIYYSVRKGFEKDH 234
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
P+I + K + +M LN +D + R ++ + L+ W+
Sbjct: 235 PDIIKYFDKWKMNDEQLGTLMVE-LNKTKDPEEAARKWIKKNQALVDEWIK 284
>gi|126650096|ref|ZP_01722329.1| glycine betaine ABC transporter glycine betaine-binding protein
[Bacillus sp. B14905]
gi|126593268|gb|EAZ87230.1| glycine betaine ABC transporter glycine betaine-binding protein
[Bacillus sp. B14905]
Length = 292
Score = 189 bits (479), Expect = 6e-46, Method: Composition-based stats.
Identities = 57/288 (19%), Positives = 108/288 (37%), Gaps = 11/288 (3%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
L L + S + V A W A+T + +LE+ LGY + L
Sbjct: 15 LGFMLAACSGGDSGSGKNSDSKEVNLAYVEWDTEIASTNVVGQVLED-LGYDVTLTPLDN 73
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
+ + ++ D + W P + ++ + + ENL GAK L V A
Sbjct: 74 AIMWEAVSKGEADGMVAAWLPHTHESQYEKYKD-KLDELGENLAGAKIGLVVPSYMKANS 132
Query: 125 IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
I+ E I GIEPG ++ SL + + +S A + +
Sbjct: 133 IE------DLTDEADRTITGIEPGAGITAATEKALDEYD-SLADWNFVTSSSGAMTTSLA 185
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
+ + + W PH + ++ YL + + G GE ++ T VR + P + +
Sbjct: 186 KALKEKEEIIVTGWSPHWKFAKYDLKYLEDPKGVFG-GEETINTFVRKGLKEDLPEVYSV 244
Query: 245 LKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVT 292
L N ++ +M ++ + +D + + + +P+ + W V
Sbjct: 245 LDNFHWTAEDLESVMLEVM-DGKDPKDAAKDWIEANPEKVAEWTKDVK 291
>gi|228979382|ref|ZP_04139718.1| Glycine betaine-binding protein [Bacillus thuringiensis Bt407]
gi|229110238|ref|ZP_04239812.1| Glycine betaine-binding protein [Bacillus cereus Rock1-15]
gi|228673224|gb|EEL28494.1| Glycine betaine-binding protein [Bacillus cereus Rock1-15]
gi|228780386|gb|EEM28617.1| Glycine betaine-binding protein [Bacillus thuringiensis Bt407]
gi|326940558|gb|AEA16454.1| glycine betaine-binding protein [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 285
Score = 189 bits (479), Expect = 6e-46, Method: Composition-based stats.
Identities = 70/291 (24%), Positives = 125/291 (42%), Gaps = 12/291 (4%)
Query: 2 YKILAVCLFL---TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
KI +CL L F+ A +A+S ++ T W + AT M V+LEE GYK
Sbjct: 3 KKIWFICLALFITMIFTSCNATNANSKGKIKLGVTSWKENIATANMWKVLLEEK-GYKVE 61
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ L + + +D + W P +K + ++ I L ++ +G L V
Sbjct: 62 LMYLEKAAIWTGVARGDVDANLEVWLPVTDKPLNDRYKD-DIVLKSKWYEGTGLGLVVPS 120
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
I S +D+ +K EL KI GIEPG+ + L +L+++SE A
Sbjct: 121 Y--MKNINSIEDLNAHKDELDNKIVGIEPGSSLMNLTNKAMKEYDIKL---KLVQSSEAA 175
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
S++++ P W PH S+ ++ YL +++ G + +Y VR +
Sbjct: 176 MMSELKKAYTKKKPIAVTLWNPHWGFSEFDLKYLKDPKKVYGEKD-DIYYSVRKGFEKDH 234
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
P++ + K + +M +LN +D + R ++ + L+ W+
Sbjct: 235 PDVIKYFDKWKMNDEQLGTLMV-MLNKTKDPEEAARKWIKKNQALVDEWVK 284
>gi|229046486|ref|ZP_04192141.1| Glycine betaine-binding protein [Bacillus cereus AH676]
gi|296503328|ref|YP_003665028.1| glycine betaine-binding protein [Bacillus thuringiensis BMB171]
gi|228724848|gb|EEL76150.1| Glycine betaine-binding protein [Bacillus cereus AH676]
gi|296324380|gb|ADH07308.1| glycine betaine-binding protein [Bacillus thuringiensis BMB171]
Length = 285
Score = 188 bits (478), Expect = 6e-46, Method: Composition-based stats.
Identities = 71/291 (24%), Positives = 125/291 (42%), Gaps = 12/291 (4%)
Query: 2 YKILAVCLFL---TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
KI +CL L F+ A +A+S ++ T W + AT M V+LEE GYK
Sbjct: 3 KKIWFICLALFITMIFTSCNATNANSKGKIKLGVTSWKENIATANMWKVLLEEK-GYKVE 61
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ L + + +D + W P +K + ++ I L ++ +G L V
Sbjct: 62 LMYLEKAAIWTGVARGDVDANLEVWLPVTDKPLNDRYKD-DIVLKSKWYEGTGLGLVVPS 120
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
I S +D+ +K EL KI GIEPG+ + L +L+++SE A
Sbjct: 121 Y--MKNINSIEDLNAHKDELDNKIVGIEPGSSLMNLTNKAMKEYDIKL---KLVQSSEAA 175
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
S++++ P W PH S+ ++ YL +++ G + +Y VR +
Sbjct: 176 MMSELKKAYTKKKPIAVTLWNPHWGFSEFDLKYLKDPKKVYGEKD-DIYYSVRKGFEKDH 234
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
P+I + K + +M +LN +D + R ++ + L+ W+
Sbjct: 235 PDIIKYFDKWKMNDEQLGTLMV-MLNKTKDPEEAARKWIKKNQALVDEWVK 284
>gi|86361140|ref|YP_473027.1| amino acid ABC transporter substrate-binding protein [Rhizobium
etli CFN 42]
gi|86285242|gb|ABC94300.1| probable amino acid ABC transporter, substrate-binding protein
[Rhizobium etli CFN 42]
Length = 333
Score = 188 bits (478), Expect = 6e-46, Method: Composition-based stats.
Identities = 53/340 (15%), Positives = 96/340 (28%), Gaps = 40/340 (11%)
Query: 1 MYKILAV-CLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M K+LA CL + A C + A W + + IL E G +I
Sbjct: 1 MKKLLASTCLTFGLLGGASFASAAECGSITIASMNWQSAEVLSNLDKFILNEGYGCSADI 60
Query: 60 KLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAVN 117
+ P + DI W L + EEG I V G +
Sbjct: 61 TVGDTVPTITSMAEKGQPDIAPEAWIDLLPDVVKKGTEEGRIVQVGSPLPDGGVQGWWIP 120
Query: 118 DVGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
+K + + I G G + G
Sbjct: 121 KYVADAHPDIKTIGDALKHPELFPDPEDAKKGAIVNGPQGWGGTVVTSQLYKAFDAEKAG 180
Query: 169 FRLIE-ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIH----------------- 210
F L++ S I + V W P + +
Sbjct: 181 FTLVDTGSAAGLDGSIAKAYERKEGWVGYYWAPTALLGKYQMVKLEAGVPEDAAEWKRCI 240
Query: 211 --YLPGGEEISGFGEASVYTVVRSDYLDK-CPNISRLLKNIKFSVALENEMMKLILNNKQ 267
+ + + V T+V + +K P + LK +S N++M + +N+
Sbjct: 241 TVADCPDPKPAAWPVDHVVTLVAKPFSEKVGPEVMDYLKKRSWSNDTVNKLMAWMTDNQA 300
Query: 268 DRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ + L + D+ W+ + ++++E +
Sbjct: 301 TGEDGAKHFLEENKDIWTKWVS-------PEAAKKIEAAL 333
>gi|324326756|gb|ADY22016.1| glycine betaine-binding protein [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 285
Score = 188 bits (478), Expect = 6e-46, Method: Composition-based stats.
Identities = 71/291 (24%), Positives = 124/291 (42%), Gaps = 12/291 (4%)
Query: 2 YKILAVCLFL---TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
KI +CL L FS A +A+S ++ T W + AT M V+LE+ GYK
Sbjct: 3 KKIWLICLALFITMIFSSCNATNANSKGKIKLGVTSWKENIATANMWKVLLEQK-GYKVE 61
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ L + + +D + W P +K + ++ I L ++ +G L V
Sbjct: 62 LMYLEKAAIWTGVARGDVDANLEVWLPVTDKPLNDRYKD-DIVLKSKWYEGTGLGLVVPS 120
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
I S +D+ +K EL KI GIEPG+ + L +L+++SE A
Sbjct: 121 YV--KNINSIEDLNAHKDELDNKIVGIEPGSSLMNLTNKAMKEYDIKL---KLVQSSEAA 175
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
S++++ P W PH S+ ++ YL +++ G + +Y VR +
Sbjct: 176 LMSELKKAYTKKKPIAVTLWNPHWGFSEFDLKYLKDPKKVYGEKD-DIYYSVRKGFEKDH 234
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
P+I + K + +M LN +D + R ++ + L+ W+
Sbjct: 235 PDIIKYFDKWKMNDEQLGTLMVE-LNKTKDPEEAARKWIKKNQTLVDEWIK 284
>gi|324992122|gb|EGC24044.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Streptococcus sanguinis
SK405]
Length = 574
Score = 188 bits (478), Expect = 7e-46, Method: Composition-based stats.
Identities = 57/291 (19%), Positives = 110/291 (37%), Gaps = 17/291 (5%)
Query: 3 KILAVCLFLTTFSISYAR------DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
KI+ ++ V A W A+T + + L+E +GY
Sbjct: 293 KIMLWSALAAVILTAFVGNQVTKLQQSKKEKVNLAYVEWDSEVASTNVVAEALKE-MGYD 351
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
I L V ++S+ N D + W P+ + ++ + + NL+G K L V
Sbjct: 352 VTITPLDNAVMWKSVANGEADAMVSAWLPTTHASLYEEYKD-KLVDLGPNLEGVKTGLVV 410
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
I + I GIEPG + +L G+ L +S
Sbjct: 411 PSYM------DADSIEDLSDQAKKTITGIEPGAGIMTATEKTMQEYS-NLSGWNLSSSST 463
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
A + + + +N + W PH + S ++ YL + G G+ +++T+ R +
Sbjct: 464 GAMTTALDQAIKNKEDIIVTGWSPHWMFSKYDLKYLKDSKGTMG-GKEAIHTITRKNLDK 522
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
P ++++L N ++ E+M I N + + ++ H +++W
Sbjct: 523 DLPEVNKVLDNFNWTQKDMEEVMLKI-NEGSSPEAAAKEWIKNHQKEVESW 572
>gi|257870168|ref|ZP_05649821.1| glycine betaine/L-proline ABC transporter [Enterococcus gallinarum
EG2]
gi|257804332|gb|EEV33154.1| glycine betaine/L-proline ABC transporter [Enterococcus gallinarum
EG2]
Length = 575
Score = 188 bits (478), Expect = 7e-46, Method: Composition-based stats.
Identities = 61/275 (22%), Positives = 113/275 (41%), Gaps = 11/275 (4%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNK 74
S+++ R +D+ V A W A+T + + +L+E +GY+ L + + S+
Sbjct: 312 SVAFGRVSDNKGTVNLAYVEWDTEVASTHVVAEVLKE-MGYEVKTTPLDNAIMWESVAKG 370
Query: 75 GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKY 134
+D + W PS + ++ ++ + NL+GAK +AV IA
Sbjct: 371 EVDGMVAAWLPSTHQAQYEQYKD-QVENLGPNLEGAKLGIAVPSYMA------VDSIADL 423
Query: 135 KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAV 194
E G I GIEPG + + +L + + +S A + + +N V
Sbjct: 424 SDEAGKTITGIEPGAGVVAAAENTVATYD-NLSDWNVATSSSGAMTVALGQAIKNKEDIV 482
Query: 195 FLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVAL 254
W PH + + ++ YL E G E+ + T+VR D P + +L ++
Sbjct: 483 ITGWSPHWMFAKYDLKYLDDPEGTMGEAES-INTMVRQGLADDLPEVYEVLDKFNWTQED 541
Query: 255 ENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
E+M I N+ + + + HP+ + W
Sbjct: 542 MEEVMLSI-NDGTSAEDAAKDWVNNHPEEVAAWTK 575
>gi|222096290|ref|YP_002530347.1| glycine betaine-binding protein [Bacillus cereus Q1]
gi|221240348|gb|ACM13058.1| glycine betaine-binding protein [Bacillus cereus Q1]
Length = 285
Score = 188 bits (478), Expect = 7e-46, Method: Composition-based stats.
Identities = 71/291 (24%), Positives = 124/291 (42%), Gaps = 12/291 (4%)
Query: 2 YKILAVCLFL---TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
KI +CL L FS A +A+S ++ T W + AT M V+LE+ GYK
Sbjct: 3 KKIWLICLALFITMIFSSCNATNANSKGKIKLGVTSWKENIATANMWKVLLEQK-GYKVE 61
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ L + + +D + W P +K + ++ I L ++ +G L V
Sbjct: 62 LMYLEKAAIWTGVARGDVDANLEVWLPVTDKPLNDRYKD-DIVLKSKWYEGTGLGLVVPS 120
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
I S +D+ +K EL KI GIEPG+ + L +L+++SE A
Sbjct: 121 YV--KNINSIEDLNAHKDELDNKIVGIEPGSSLMNLTNKAMKEYDIKL---KLVQSSEAA 175
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
S++++ P W PH S+ ++ YL +++ G + +Y VR +
Sbjct: 176 MMSELKKAYTKKKPIAVTLWNPHWGFSEFDLKYLKDPKKVYGEKD-DIYYSVRKGFEKDH 234
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
P+I + K + +M LN +D + R ++ + L+ W+
Sbjct: 235 PDIIKYFDKWKMNDEQLGTLMVE-LNKTKDPEEAARKWIKKNQTLVDEWIK 284
>gi|229128130|ref|ZP_04257112.1| Glycine betaine-binding protein [Bacillus cereus BDRD-Cer4]
gi|228655405|gb|EEL11261.1| Glycine betaine-binding protein [Bacillus cereus BDRD-Cer4]
Length = 285
Score = 188 bits (478), Expect = 7e-46, Method: Composition-based stats.
Identities = 70/291 (24%), Positives = 125/291 (42%), Gaps = 12/291 (4%)
Query: 2 YKILAVCLFL---TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
KI +CL L F+ A +A+S ++ T W + AT M V+LEE GYK
Sbjct: 3 KKIWFICLALFITMIFTSCNATNANSKGKIKLGVTSWKENIATANMWKVLLEEK-GYKVE 61
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ L + + +D + W P +K + ++ I L ++ +G L V
Sbjct: 62 LMYLEKAAIWTGVARGDVDANLEVWLPVTDKPLNDRYKD-DIVLKSKWYEGTGLGLVVPS 120
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
I S +D+ +K EL KI GIEPG+ + L +L+++SE A
Sbjct: 121 Y--MKNINSIEDLNAHKNELDNKIVGIEPGSSLMNLTNKAMKEYDIKL---KLVQSSEAA 175
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
S++++ P W PH S+ ++ YL +++ G + +Y VR +
Sbjct: 176 MMSELKKAYTKKKPIAVTLWNPHWGFSEFDLKYLKDPKKVYGEKD-DIYYSVRKGFEKDH 234
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
P++ + K + +M +LN +D + R ++ + L+ W+
Sbjct: 235 PDVIKYFDKWKMNDEQLGTLMV-MLNKTKDPEEAARKWIKKNQALVDEWVK 284
>gi|269929272|ref|YP_003321593.1| Substrate-binding region of ABC-type glycine betaine transport
system [Sphaerobacter thermophilus DSM 20745]
gi|269788629|gb|ACZ40771.1| Substrate-binding region of ABC-type glycine betaine transport
system [Sphaerobacter thermophilus DSM 20745]
Length = 368
Score = 188 bits (478), Expect = 8e-46, Method: Composition-based stats.
Identities = 52/324 (16%), Positives = 105/324 (32%), Gaps = 39/324 (12%)
Query: 17 SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGI 76
+ +D P+ FAD GW + ILE GY+T + + +
Sbjct: 52 TAPGSSDLDGPIVFADFGWDSAYFHNRVAQFILEHGYGYETTSVPGETVPLTQGMIRGDV 111
Query: 77 DIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA-----------LGI 125
+ +W F+ +EEG+I + N + V +
Sbjct: 112 HVATEFWADQNPPFL-EAVEEGTILDLGTNYGESVQGFYVPTYVIEGDPERGIEPMAPDL 170
Query: 126 KSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
KS +D+ KYK + Y G E Q R + S A
Sbjct: 171 KSVEDLPKYKDLFQDPEDPSKGRFYDCIAGWECEQVNAAKFAAYGLDEHYNRFLPGSATA 230
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLN-------------IHYLPGGEEISGFGEAS 225
S + P W P I L+ ++ G+E + +
Sbjct: 231 LASSLVAAYEKGEPWFGYYWGPTWIFGLLDLTKIEEPPYSDECWEHILEGKEACAYPDVQ 290
Query: 226 VYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLK 285
V V +++ +K P++ L+N + + + + + +N+ + + L+ + +
Sbjct: 291 VRIGVNAEFAEKAPDVVEFLENYETTFDQTSAALLYMHDNEAEPEEAAIWFLKEYEEQWT 350
Query: 286 NWLIGVTTFDGQDPSRQLERFMNN 309
W+ +D + ++ + +
Sbjct: 351 QWVP-------EDVAAKVRDALAS 367
>gi|89893965|ref|YP_517452.1| hypothetical protein DSY1219 [Desulfitobacterium hafniense Y51]
gi|219668340|ref|YP_002458775.1| substrate-binding region of ABC-type glycine betaine transporter
[Desulfitobacterium hafniense DCB-2]
gi|89333413|dbj|BAE83008.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219538600|gb|ACL20339.1| Substrate-binding region of ABC-type glycine betaine transport
system [Desulfitobacterium hafniense DCB-2]
Length = 298
Score = 188 bits (478), Expect = 8e-46, Method: Composition-based stats.
Identities = 62/299 (20%), Positives = 109/299 (36%), Gaps = 20/299 (6%)
Query: 2 YKILAVCLFLTTFSISYARDA-----------DSCTPVRFADTGWTDIAATTAMTSVILE 50
+ L ++ A S V W + A + + VILE
Sbjct: 9 KALFWALTALLAIGLTGCGAAPGSPSGNKKTNGSDKTVNIGYVNWAEAVAVSNLWKVILE 68
Query: 51 EILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGA 110
E GYK + L F L +DIFM W P+ + + A
Sbjct: 69 EQ-GYKVKMTSLDAAPLFVGLSAGNLDIFMDSWLPTTHQIFWDKYKNKLDDYGVWYTAEA 127
Query: 111 KYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
K L V + I S +++ +K L +I GI+PG + I++ F
Sbjct: 128 KIGLVVPEYAE---ISSIEELNAHKDRLSGRITGIDPGAGIMKATETAIDSYNLD---FN 181
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
LI++SE A + + + RN W PH + ++ YL + G E ++T+
Sbjct: 182 LIQSSEAAMLAALDKAYRNQEWIAVTGWSPHWKFAKYDLKYLEDPKGSYGQSE-QIHTLA 240
Query: 231 RSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
++ P ++ +LK + + + I N + + + + DL+ +WL
Sbjct: 241 NKEFTQAHPEVAAMLKKFELNDQQIGTLEGYI-NEGMKPEEAAQKWMAENRDLVDSWLK 298
>gi|30020913|ref|NP_832544.1| glycine betaine-binding protein [Bacillus cereus ATCC 14579]
gi|29896466|gb|AAP09745.1| Glycine betaine-binding protein [Bacillus cereus ATCC 14579]
Length = 285
Score = 188 bits (477), Expect = 8e-46, Method: Composition-based stats.
Identities = 70/291 (24%), Positives = 125/291 (42%), Gaps = 12/291 (4%)
Query: 2 YKILAVCLFL---TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
KI +CL L F+ A +A+S ++ T W + AT M V+LEE GYK
Sbjct: 3 KKIWFICLALFITMIFTSCNATNANSKGKIKLGVTSWKENIATANMWKVLLEEK-GYKVE 61
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ L + + +D + W P +K + ++ I L ++ +G L V
Sbjct: 62 LMYLEKAAIWTGVARGDVDANVEVWLPVTDKPLNDRYKD-DIVLKSKWYEGTGLGLVVPS 120
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
I S +D+ +K EL KI GIEPG+ + L +L+++SE A
Sbjct: 121 Y--MKNINSIEDLNAHKNELDNKIVGIEPGSSLMNLTNKAMKEYDIKL---KLVQSSEAA 175
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
S++++ P W PH S+ ++ YL +++ G + +Y VR +
Sbjct: 176 MMSELKKAYTKKKPIAVTLWNPHWGFSEFDLKYLKDPKKVYGEKD-DIYYSVRKGFEKDH 234
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
P++ + K + +M +LN +D + R ++ + L+ W+
Sbjct: 235 PDVIKYFDKWKMNDEQLGTLMV-MLNKTKDPEEAARKWIKKNQALVDEWVK 284
>gi|328945845|gb|EGG39996.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Streptococcus sanguinis
SK1087]
Length = 574
Score = 188 bits (477), Expect = 8e-46, Method: Composition-based stats.
Identities = 57/291 (19%), Positives = 110/291 (37%), Gaps = 17/291 (5%)
Query: 3 KILAVCLFLTTFSISYAR------DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
KI+ ++ V A W A+T + + L+E +GY
Sbjct: 293 KIMLWSALAAVILTAFVGNQVTKLQQSKKEKVNLAYVEWDSEVASTNVVAEALKE-MGYD 351
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
I L V ++S+ N D + W P+ + ++ + + NL+G K L V
Sbjct: 352 VTITPLDNAVMWKSVANSEADAMVSAWLPTTHAALYEEYKD-KLVDLGPNLEGVKTGLVV 410
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
I + I GIEPG + +L G+ L +S
Sbjct: 411 PSYM------DADSIEDLSDQAKKTITGIEPGAGIMTATEKTMQEYS-NLSGWNLSSSST 463
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
A + + + +N + W PH + S ++ YL + G G+ +++T+ R +
Sbjct: 464 GAMTTALDQAIKNKEDIIVTGWSPHWMFSKYDLKYLKDPKGTMG-GKEAIHTMTRKNLDK 522
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
P ++++L N ++ E+M I N + + ++ H +++W
Sbjct: 523 DLPEVNKVLDNFNWTQKDMEEVMLKI-NEGSSPEAAAKEWIKNHQKEVESW 572
>gi|118478147|ref|YP_895298.1| glycine betaine-binding protein [Bacillus thuringiensis str. Al
Hakam]
gi|229185007|ref|ZP_04312197.1| Glycine betaine-binding protein [Bacillus cereus BGSC 6E1]
gi|118417372|gb|ABK85791.1| glycine betaine-binding protein [Bacillus thuringiensis str. Al
Hakam]
gi|228598482|gb|EEK56112.1| Glycine betaine-binding protein [Bacillus cereus BGSC 6E1]
Length = 285
Score = 188 bits (477), Expect = 8e-46, Method: Composition-based stats.
Identities = 70/291 (24%), Positives = 124/291 (42%), Gaps = 12/291 (4%)
Query: 2 YKILAVCLFL---TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
KI +CL L F+ A +A+S ++ T W + AT M V+LE+ GYK
Sbjct: 3 KKIWFICLALFITMIFTSCNATNANSKGKIKLGVTSWKENIATANMWKVLLEQK-GYKVE 61
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ L + + +D + W P +K + ++ I L ++ +G L V
Sbjct: 62 LMYLEKAAIWTGVARGDVDANLEVWLPVTDKPLNNRYKD-DIVLKSKWYEGTGLGLVVPS 120
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
I S +D+ +K EL KI GIEPG+ + L +L+++SE A
Sbjct: 121 Y--MKNISSIEDLNTHKDELDNKIIGIEPGSSLMNLTNKAMKKYDIKL---KLVQSSEAA 175
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
S++++ P W PH S+ ++ YL +++ G + +Y VR +
Sbjct: 176 LMSELKKAYTKKKPIAVTLWNPHWGFSEFDLKYLKDPKKVYGEKD-DIYYSVRKGFEKDH 234
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
P+I + K + +M LN +D + R ++ + L+ W+
Sbjct: 235 PDIIKYFDKWKMNDEQLGTLMVE-LNKTKDPEEAARKWIKKNQALVDEWIK 284
>gi|254437992|ref|ZP_05051486.1| ABC transporter, QAT family, substrate-binding protein, putative
[Octadecabacter antarcticus 307]
gi|198253438|gb|EDY77752.1| ABC transporter, QAT family, substrate-binding protein, putative
[Octadecabacter antarcticus 307]
Length = 354
Score = 188 bits (477), Expect = 8e-46, Method: Composition-based stats.
Identities = 49/317 (15%), Positives = 96/317 (30%), Gaps = 22/317 (6%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M + + + + D C V W A TA++ ++E+ G +
Sbjct: 32 MRRFMLGATLAVLTAPTAVLAQDQCGDVTITQMNWDSAAIVTAVSQFLMEQGYGCDVTVV 91
Query: 61 LLAVPV-TFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVND 118
+N DI W S +G+I + L G +
Sbjct: 92 PSDTTPAIASLAENNEPDIVTELWTNSTGDVYKKLRADGNIVELGSVLNPGGVEGWWLPT 151
Query: 119 VGFA--LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR-LIEAS 175
+ + + I + +G G ++I G S
Sbjct: 152 YLVEDHPELATIEGIMANPELVGGMFNNCPDGWGCRIVNDNLIRAFGLEDSGIEVFNHGS 211
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE-----------------I 218
+ + ++ P W P ++ + GE
Sbjct: 212 GETLATSMAAAYQSEEPWFGYYWGPTTPLGMFDMTSIDLGEYDPEVHSANQNADAPNPMA 271
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLR 278
S F A V T+V D+++ P+I+ L+ N+ F A ++++ +N + L+
Sbjct: 272 SAFPAAPVLTIVTKDFMESHPDIAELMGNVTFETATMSQLLAWKEDNNASNEEAAVYFLK 331
Query: 279 THPDLLKNWLIGVTTFD 295
+PD W+ T +
Sbjct: 332 NNPDAWSAWINAAATEN 348
>gi|229024282|ref|ZP_04180741.1| Glycine betaine-binding protein [Bacillus cereus AH1272]
gi|228737057|gb|EEL87593.1| Glycine betaine-binding protein [Bacillus cereus AH1272]
Length = 285
Score = 188 bits (477), Expect = 8e-46, Method: Composition-based stats.
Identities = 70/293 (23%), Positives = 127/293 (43%), Gaps = 13/293 (4%)
Query: 1 MYK---ILAVCLFLTTFSISY-ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
M K I+++ LF++ S A +A+S ++ T W + AT M V+LEE GYK
Sbjct: 1 MRKKIWIISLLLFISMIFTSCNATNANSKGKIKLGVTSWKENIATANMWKVLLEEK-GYK 59
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ L + + +D + W P +K + + I L ++ +G L V
Sbjct: 60 VELMYLEKAAIWTGVARGDVDANLEVWLPVTDKPL-NARYKDDIVLKSKWYEGTGLGLVV 118
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ S +D+ +K EL KI GIEPG+ + L +L+++SE
Sbjct: 119 PSYV--KNVNSIEDLNAHKDELDNKIVGIEPGSSLMNLTNKAMKEYDIKL---KLVQSSE 173
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
A S++++ P W PH S+ ++ YL +++ G + +Y VR +
Sbjct: 174 AAMMSELKKAYTKKKPIAVTLWNPHWGFSEFDLKYLKDPKKVYGEKD-DIYYSVRKGFEK 232
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
P+I + K + +M +LN +D + R ++ + L+ W+
Sbjct: 233 DHPDIVKYFDQWKMNDEQLGTLMV-MLNKTKDPEEAARKWIKKNQALVDEWIK 284
>gi|220923324|ref|YP_002498626.1| Substrate-binding region of ABC-type glycine betaine transport
system [Methylobacterium nodulans ORS 2060]
gi|219947931|gb|ACL58323.1| Substrate-binding region of ABC-type glycine betaine transport
system [Methylobacterium nodulans ORS 2060]
Length = 278
Score = 188 bits (477), Expect = 9e-46, Method: Composition-based stats.
Identities = 65/289 (22%), Positives = 113/289 (39%), Gaps = 11/289 (3%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M + L T A AD VR A W D T + ++LEE GY+
Sbjct: 1 MRAKVLGTLLCLTLVQGSAEAAD--KQVRIAYVEWADAVVATNILKLVLEEK-GYQVKTI 57
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
LA ++S+ N D+ + W P+ + L + + L+ N+ GAK V
Sbjct: 58 PLAAAAMWQSVANGDADVSVAAWLPTTQGAYYAKL-KNRVDLIGPNVTGAKIGWVVPAYS 116
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ S +D+ E+ K+ GI+PG + + I K +L++ S+
Sbjct: 117 ---DLNSIEDLKSKASEVDGKVIGIDPGAGVMRSSEEAIKAYKL---PVKLVDGSDATMT 170
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
S ++ R V +W PH + + ++ YL + G E +V T+ R D P
Sbjct: 171 SALKDSIRQKKNIVVTAWTPHWMFARYDLKYLADPKGAFGQ-EETVNTLARKGLKDDMPE 229
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+ R+L+ K ++ E +M + + + +WL
Sbjct: 230 VYRILQKFKLTIKDEETVMAENEEKGAKPSETAAKWIAENRATVDSWLK 278
>gi|229173438|ref|ZP_04300982.1| Glycine betaine-binding protein [Bacillus cereus MM3]
gi|228610132|gb|EEK67410.1| Glycine betaine-binding protein [Bacillus cereus MM3]
Length = 285
Score = 188 bits (477), Expect = 9e-46, Method: Composition-based stats.
Identities = 70/293 (23%), Positives = 125/293 (42%), Gaps = 13/293 (4%)
Query: 1 MYK---ILAVCLFLTTFSISY-ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
M K ++ + LF+T S A +A+S ++ T W + AT M V+LE+ GYK
Sbjct: 1 MKKKIWLICLALFITMIFSSCNATNANSKGKIKLGVTSWKENIATANMWKVLLEQK-GYK 59
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ L + + +D + W P +K + + I L ++ +G L V
Sbjct: 60 VELMYLEKAAIWTGVARGDVDANLEVWLPVTDKPL-NARYKDDIVLKSKWYEGTGLGLVV 118
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
I S +D+ +K EL KI GIEPG+ + L +L+++SE
Sbjct: 119 PSYV--KNINSIEDLNAHKDELDNKIVGIEPGSSLMNLTNKAMKEYDIKL---KLVQSSE 173
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
A S++++ P W PH S+ ++ YL +++ G + +Y VR +
Sbjct: 174 AAMMSELKKAYTKKKPIAVTLWNPHWGFSEFDLKYLKDPKKVYGEKD-DIYYSVRKGFEK 232
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
P+I + K + +M LN +D + R ++ + L+ W+
Sbjct: 233 DHPDIIKYFDKWKMNDEQLGTLMVE-LNKTKDPEEAARKWIKKNQALVDEWIK 284
>gi|15964787|ref|NP_385140.1| putative periplasmic binding transmembrane protein [Sinorhizobium
meliloti 1021]
gi|307309675|ref|ZP_07589327.1| Substrate-binding region of ABC-type glycine betaine transport
system [Sinorhizobium meliloti BL225C]
gi|307319472|ref|ZP_07598899.1| Substrate-binding region of ABC-type glycine betaine transport
system [Sinorhizobium meliloti AK83]
gi|15073965|emb|CAC45606.1| Probable glycine betaine ABC transporter, periplasmic
substrate-binding component [Sinorhizobium meliloti
1021]
gi|306894844|gb|EFN25603.1| Substrate-binding region of ABC-type glycine betaine transport
system [Sinorhizobium meliloti AK83]
gi|306899887|gb|EFN30510.1| Substrate-binding region of ABC-type glycine betaine transport
system [Sinorhizobium meliloti BL225C]
Length = 332
Score = 188 bits (477), Expect = 9e-46, Method: Composition-based stats.
Identities = 54/339 (15%), Positives = 100/339 (29%), Gaps = 39/339 (11%)
Query: 1 MYKILAV-CLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M K+LA CL + A A C V A+ W ++ IL E G +
Sbjct: 1 MKKLLATTCLAAGLLGLGSAASAAECGDVTIANMNWQSAEVLASVDKFILTEGYGCSAEL 60
Query: 60 KLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVN 117
+ P ++ DI W L + L+EG + A L GA V
Sbjct: 61 VVGDTVPTITSMIEKGEPDIAPEGWVDLLPDVVNRGLQEGKLVGAAVALSDGAVQGWWVP 120
Query: 118 DVGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
+K + + I+ G G + G
Sbjct: 121 KYIVDANPDIKTIDDVLKHKELFPDPEDPSKGAIFNGPQGWGGTVVTTQLYKAYGAEAAG 180
Query: 169 FRLIE-ASELASFSQIRRDQRNNIPAVFLSWEPHPI-------------------NSDLN 208
F L++ S I + W P + N
Sbjct: 181 FTLVDTGSAAGLDGSIAKAYERKQGWAGYYWAPTALLGKYEMVKLEHGVPNDMAEWKRCN 240
Query: 209 IHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQD 268
+ + + + V T+V ++ D+ L ++ N++M + +N+
Sbjct: 241 TVADCPDPKKNDWPKDKVQTLVTKEFADRAGPAMEYLNTRAWTNDTVNKLMAWMTDNQAS 300
Query: 269 RQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ + L +PDL W+ + + +++ +
Sbjct: 301 GEEGAKHFLEENPDLWTKWVS-------PEVAEKIKAAL 332
>gi|163940538|ref|YP_001645422.1| substrate-binding region of ABC-type glycine betaine transport
system [Bacillus weihenstephanensis KBAB4]
gi|163862735|gb|ABY43794.1| Substrate-binding region of ABC-type glycine betaine transport
system [Bacillus weihenstephanensis KBAB4]
Length = 285
Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats.
Identities = 69/293 (23%), Positives = 126/293 (43%), Gaps = 13/293 (4%)
Query: 1 MYK---ILAVCLFLTTFSISY-ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
M K I+++ LF++ S A +A+S ++ T W + AT M V+LEE GYK
Sbjct: 1 MRKKIWIISLLLFISMIFTSCNATNANSKGKIKLGVTSWKENIATANMWKVLLEEK-GYK 59
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ L + + +D + W P +K + + L ++ +G L V
Sbjct: 60 VELMYLEKAAIWTGVARGDVDANLEVWLPVTDKPL-NARYKDDFVLKSKWYEGTGLGLVV 118
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ S +D+ +K EL KI GIEPG+ + L +L+++SE
Sbjct: 119 PSYV--KNVNSIEDLNAHKDELDNKIVGIEPGSSLMNLTNKAMKEYDIKL---KLVQSSE 173
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
A S++++ P W PH S+ ++ YL +++ G + +Y VR +
Sbjct: 174 AAMMSELKKAYTKKKPIAVTLWNPHWGFSEFDLKYLKDPKKVYGEKD-DIYYSVRKGFEK 232
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
P+I + K + +M +LN +D + R ++ + L+ W+
Sbjct: 233 DHPDIVKYFDQWKMNDEQLGTLMV-MLNKTKDPEEAARKWIKKNQALVDEWIK 284
>gi|241113177|ref|YP_002973012.1| Substrate-binding region of ABC-type glycine betaine transport
system [Rhizobium leguminosarum bv. trifolii WSM1325]
gi|240861385|gb|ACS59051.1| Substrate-binding region of ABC-type glycine betaine transport
system [Rhizobium leguminosarum bv. trifolii WSM1325]
Length = 333
Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats.
Identities = 53/340 (15%), Positives = 95/340 (27%), Gaps = 40/340 (11%)
Query: 1 MYKILAV-CLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M K+LA CL + A C V A W + + IL E G + I
Sbjct: 1 MKKLLASTCLTFGLIGGASFASAAECGTVTIASMNWQSAEVLSNLDKFILNEGYGCEAEI 60
Query: 60 KLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAVN 117
+ P + DI W L + +EG I V G +
Sbjct: 61 TVGDTVPTITSMAEKGQPDIAPEAWIDLLPDVVKKGTDEGRIVQVGSPLPDGGVQGWWIP 120
Query: 118 DVGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
+K + + IY G G + + G
Sbjct: 121 KYLADAHPDIKTIGDVLKHPELFPAPEDAKKGAIYNGPQGWGGTVVTTQLYKAFEADKAG 180
Query: 169 FRLIE-ASELASFSQIRRDQRNNIPAVFLSWEPHPI-------------------NSDLN 208
F L++ S I + W P + N
Sbjct: 181 FTLVDTGSAAGLDGSISKAYERKEGWAGYYWAPTALLGKYEMVKLEAGVPNDAAEWKRCN 240
Query: 209 IHYLPGGEEISGFGEASVYTVVRSDYLDKC-PNISRLLKNIKFSVALENEMMKLILNNKQ 267
+ + + + T+V + +K P + L +S N++M + +N+
Sbjct: 241 TVADCPDPKPNAWPVDKIVTLVAKPFSEKAGPEVMDYLTKRSWSNDTVNKLMAWMTDNQA 300
Query: 268 DRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ + L+ + DL W+ + ++E +
Sbjct: 301 TGEDGAKHFLKENKDLWTKWVS-------PEAVTKIEAAL 333
>gi|228908532|ref|ZP_04072372.1| Glycine betaine-binding protein [Bacillus thuringiensis IBL 200]
gi|228851085|gb|EEM95899.1| Glycine betaine-binding protein [Bacillus thuringiensis IBL 200]
Length = 285
Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats.
Identities = 70/291 (24%), Positives = 124/291 (42%), Gaps = 12/291 (4%)
Query: 2 YKILAVCLFL---TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
KI +CL L F+ A +A+S ++ T W + AT M V+LEE GYK
Sbjct: 3 KKIWFICLALFITMIFTSCNATNANSKGKIKLGVTSWKENIATANMWKVLLEEK-GYKVE 61
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ L + + +D + W P +K + ++ I L ++ +G L V
Sbjct: 62 LMYLEKAAIWTGVARGDVDANLEVWLPVTDKPLNDRYKD-DIVLKSKWYEGTGLGLVVPS 120
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
I S +D+ +K EL KI GIEPG+ + L +L+++SE A
Sbjct: 121 YV--KNINSIEDLNAHKDELDNKIVGIEPGSSLMNLTNKAMKEYDIKL---KLVQSSEAA 175
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
S++++ P W PH S+ ++ YL +++ G + +Y VR +
Sbjct: 176 MMSELKKAYTKKKPIAVTLWNPHWGFSEFDLKYLKDPKKVYGEKD-DIYYSVRKGFEKDH 234
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
P++ + K + +M LN +D + R ++ + L+ W+
Sbjct: 235 PDVIKYFDKWKMTDEQLGTLMVT-LNKTKDPEEAARKWIKKNQALVDEWVK 284
>gi|196041710|ref|ZP_03109001.1| putative glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Bacillus cereus
NVH0597-99]
gi|196027479|gb|EDX66095.1| putative glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Bacillus cereus
NVH0597-99]
Length = 285
Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats.
Identities = 70/291 (24%), Positives = 124/291 (42%), Gaps = 12/291 (4%)
Query: 2 YKILAVCLFL---TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
KI +CL L F+ A +A+S ++ T W + AT M V+LE+ GYK
Sbjct: 3 KKIWFICLALFITMIFTSCNATNANSKGKIKLGVTSWKENIATANMWKVLLEQK-GYKVE 61
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ L + + +D + W P +K + ++ I L ++ +G L V
Sbjct: 62 LMYLEKAAIWTGVARGDVDANLEVWLPVTDKPLNDRYKD-DIVLKSKWYEGTGLGLVVPS 120
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
I S +D+ +K EL KI GIEPG+ + L +L+++SE A
Sbjct: 121 Y--MKNISSIEDLNAHKDELDNKIVGIEPGSSLMNLTNKAMKEYDIKL---KLVQSSEAA 175
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
S++++ P W PH S+ ++ YL +++ G + +Y VR +
Sbjct: 176 LMSELKKAYTKKKPIAVTLWNPHWGFSEFDLKYLKDPKKVYGEKD-DIYYSVRKGFEKDH 234
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
P+I + K + +M LN +D + R ++ + L+ W+
Sbjct: 235 PDIIKYFDKWKMNDEQLGTLMVE-LNKTKDPEEAARQWIKKNQALVDEWIK 284
>gi|229156365|ref|ZP_04284460.1| Glycine betaine-binding protein [Bacillus cereus ATCC 4342]
gi|228627088|gb|EEK83820.1| Glycine betaine-binding protein [Bacillus cereus ATCC 4342]
Length = 285
Score = 188 bits (476), Expect = 1e-45, Method: Composition-based stats.
Identities = 70/291 (24%), Positives = 124/291 (42%), Gaps = 12/291 (4%)
Query: 2 YKILAVCLFL---TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
KI +CL L F+ A +A+S ++ T W + AT M V+LE+ GYK
Sbjct: 3 KKIWFICLALFITMIFTSCNATNANSKGKIKLGVTSWKENIATANMWKVLLEQK-GYKVE 61
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ L + + +D + W P +K + ++ I L ++ +G L V
Sbjct: 62 LMYLEKAAIWTGVARGDVDANLEVWLPVTDKPLNDRYKD-DIVLKSKWYEGTGLGLVVPS 120
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
I S +D+ +K EL KI GIEPG+ + L +L+++SE A
Sbjct: 121 Y--MKNINSIEDLNAHKDELDNKIVGIEPGSSLMNLTNKAMKEYDIKL---KLVQSSEAA 175
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
S++++ P W PH S+ ++ YL +++ G + +Y VR +
Sbjct: 176 MMSELKKAYTKKKPIAVTLWNPHWGFSEFDLKYLKDPKKVYGEKD-DIYYSVRKGFEKDH 234
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
P+I + K + +M LN +D + R ++ + L+ W+
Sbjct: 235 PDIIKYFDKWKMNDEQLGTLMVE-LNKTKDPEEAARKWIKNNQALVDEWVK 284
>gi|15673433|ref|NP_267607.1| betaine ABC transporter permease and substrate binding protein
[Lactococcus lactis subsp. lactis Il1403]
gi|7188801|gb|AAF37879.1|AF234619_2 OpuABC [Lactococcus lactis]
gi|12724442|gb|AAK05549.1|AE006375_3 betaine ABC transporter permease and substrate binding protein
[Lactococcus lactis subsp. lactis Il1403]
gi|326406928|gb|ADZ63999.1| glycine betaine/carnitine/choline ABC transporter, permease and
substrate-binding protein [Lactococcus lactis subsp.
lactis CV56]
Length = 573
Score = 188 bits (476), Expect = 1e-45, Method: Composition-based stats.
Identities = 54/284 (19%), Positives = 104/284 (36%), Gaps = 11/284 (3%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP 65
+ L + FS S V W A+ + + ++E G+ L
Sbjct: 301 LLALIIGAFSGMSFGKTASDKKVDLVYMNWDSEVASINVLTQAMKEH-GFDVKTTALDNA 359
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
V ++++ N D + W P+ K + + L+ NL+GAK V
Sbjct: 360 VAWQTVANGQADGMVSAWLPNTHKTQWQKYGKS-VDLLGPNLKGAKVGFVVPSYM----- 413
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
+ I + I GIEPG +N+ +LK ++L+ +S A +
Sbjct: 414 -NVNSIEDLTNQANKTITGIEPGAGVMAASEKTLNSYD-NLKDWKLVPSSSGAMTVALGE 471
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
+ + V W PH + + ++ YL + G E ++ T+VR + P ++L
Sbjct: 472 AIKQHKDIVITGWSPHWMFNKYDLKYLADPKGTMGTSE-NINTIVRKGLKKENPEAYKVL 530
Query: 246 KNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
++ +M I N + + + ++ H + W
Sbjct: 531 DKFNWTTKDMEAVMLDI-QNGKTPEEAAKNWIKDHQKEVDKWFK 573
>gi|301054309|ref|YP_003792520.1| glycine betaine-binding protein [Bacillus anthracis CI]
gi|300376478|gb|ADK05382.1| glycine betaine-binding protein [Bacillus cereus biovar anthracis
str. CI]
Length = 285
Score = 188 bits (476), Expect = 1e-45, Method: Composition-based stats.
Identities = 71/291 (24%), Positives = 124/291 (42%), Gaps = 12/291 (4%)
Query: 2 YKILAVCLFL---TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
KI +CL L F+ A +A+S ++ T W + AT M V+LE+ GYK
Sbjct: 3 KKIWFICLALFITMIFTSCNATNANSKGKIKLGVTSWKENIATANMWKVLLEQK-GYKVE 61
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ L + + +D + W P +K + ++ I L ++ +G L V
Sbjct: 62 LMYLEKAAIWTGVARGDVDANLEVWLPVTDKPLNDRYKD-DIVLKSKWYEGTGLGLVVPS 120
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
I S +D+ +K EL KI GIEPG+ + L +L+++SE A
Sbjct: 121 Y--MKNISSIEDLNAHKDELDNKIVGIEPGSSLMNLTNKAMKEYDIKL---KLVQSSEAA 175
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
S++++ P W PH S+ ++ YL +++ G + +Y VR +
Sbjct: 176 LMSELKKAYTKKKPIAVTLWNPHWGFSEFDLKYLKDPKKVYGEKD-DIYYSVRKGFEKDH 234
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
PNI + K + +M LN +D + R ++ + L+ W+
Sbjct: 235 PNIIKYFDKWKMNDEQLGTLMVE-LNKTKDPEEAARKWIKKNQALVDEWIK 284
>gi|150010417|ref|YP_001305160.1| glycine betaine-binding protein [Parabacteroides distasonis ATCC
8503]
gi|237708447|ref|ZP_04538928.1| glycine betaine-binding protein [Bacteroides sp. 9_1_42FAA]
gi|149938841|gb|ABR45538.1| glycine betaine-binding protein precursor [Parabacteroides
distasonis ATCC 8503]
gi|229457668|gb|EEO63389.1| glycine betaine-binding protein [Bacteroides sp. 9_1_42FAA]
Length = 295
Score = 188 bits (476), Expect = 1e-45, Method: Composition-based stats.
Identities = 50/284 (17%), Positives = 106/284 (37%), Gaps = 12/284 (4%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
+ + S + + + A W + A T + IL E G++ + +
Sbjct: 6 FITTIISSILMTSCIINPN---KISIAYPNWAEGIAVTHLAREILVEQ-GFQVELLNADI 61
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
F SL D+F+ W P K +G +++ + A+ L V
Sbjct: 62 APIFTSLARGKTDVFLDSWLPVTHKPYFEKY-QGKFEILGQVFDSARIGLVVPAYVP--- 117
Query: 125 IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
I S +++ ++ + +I GI+ G + I ++L+ +S A + +
Sbjct: 118 INSIEELPEFTERFNGEIVGIDAGTGIMKCTETAIPTYGLD---YKLMISSGPAMTALLD 174
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
+ + V W PH + + L + I G E + + R+ + + P + L
Sbjct: 175 KAIKKKEWIVVTGWTPHWMFDRYELKVLEDPKNIYGVSEY-IRAIARTGFSKEHPFAAEL 233
Query: 245 LKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
L NI + + +M I + + R ++ + L+ +W+
Sbjct: 234 LGNIHLTDRQISSLMSAIEQTRGTEREAVREWIKQNRALVDSWI 277
>gi|324994216|gb|EGC26130.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Streptococcus sanguinis
SK678]
gi|325697943|gb|EGD39827.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Streptococcus sanguinis
SK160]
Length = 574
Score = 188 bits (476), Expect = 1e-45, Method: Composition-based stats.
Identities = 57/291 (19%), Positives = 111/291 (38%), Gaps = 17/291 (5%)
Query: 3 KILAVCLFLTTFSISYAR------DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
K++ F ++ V A W A+T + + L+E +GY
Sbjct: 293 KVMLWSALAAVFLTAFVGNQVTKLQQSKKEKVNLAYVEWDSEVASTNVVAEALKE-MGYD 351
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
I L V ++S+ N D + W P+ + ++ + + NL+G K L V
Sbjct: 352 VTITPLDNAVMWKSVANSEADAMVSAWLPTTHAALYEEYKD-KLVDLGPNLEGVKTGLVV 410
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
I + I GIEPG + +L G+ L +S
Sbjct: 411 PSYM------DADSIEDLSDQAKKTITGIEPGAGIMTATEKTMQEYS-NLSGWNLSSSST 463
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
A + + + +N + W PH + S ++ YL + G G+ +++T+ R +
Sbjct: 464 GAMTTALDQAIKNKEDIIVTGWSPHWMFSKYDLKYLKDPKGTMG-GKEAIHTMTRKNLDK 522
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
P ++++L N ++ E+M I N + + ++ H +++W
Sbjct: 523 DLPEVNKVLDNFNWTQKDMEEVMLKI-NEGSSPEAAAKEWIKNHQKEVESW 572
>gi|22537935|ref|NP_688786.1| amino acid ABC transporter permease [Streptococcus agalactiae
2603V/R]
gi|76798898|ref|ZP_00781104.1| amino acid ABC transporter, permease protein [Streptococcus
agalactiae 18RS21]
gi|22534834|gb|AAN00659.1|AE014273_6 amino acid ABC transporter, permease protein [Streptococcus
agalactiae 2603V/R]
gi|76585744|gb|EAO62296.1| amino acid ABC transporter, permease protein [Streptococcus
agalactiae 18RS21]
Length = 575
Score = 188 bits (476), Expect = 1e-45, Method: Composition-based stats.
Identities = 47/273 (17%), Positives = 103/273 (37%), Gaps = 11/273 (4%)
Query: 17 SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGI 76
+ + V+ A W A+T + + +L+ GY + L V ++++ N
Sbjct: 314 MTSGNEAKGQKVKIAYVQWDSEVASTNVIAEVLKSK-GYDVELTPLDNAVMWQTVANGNA 372
Query: 77 DIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKK 136
D W P + S+ + +++ K L V + I +
Sbjct: 373 DFTTSAWLPKTHGQYFNKY-KNSLDDLGPHVENVKIGLVVPKYM------NVNSIEELSN 425
Query: 137 ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFL 196
+ +I GIEPG + + + +L ++L+ AS A + + + +N V
Sbjct: 426 QADKQITGIEPGAGIMKSAKQSLKDYP-NLSSWKLLSASTGAMTTTLGKAIKNKDQVVIT 484
Query: 197 SWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALEN 256
W PH + + ++ YL ++ G GE + T+ R + P + +++ K++
Sbjct: 485 GWSPHWMFAKYDLKYLKDPKKSFG-GEEHINTIARKNLKKDMPKVYKIIDKFKWTKEDME 543
Query: 257 EMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+M + + + ++ H + W
Sbjct: 544 SIMLDMD-KGMEPAKAAQKWIKNHKKEVSEWTK 575
>gi|227519676|ref|ZP_03949725.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, membrane/binding protein
[Enterococcus faecalis TX0104]
gi|227072900|gb|EEI10863.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, membrane/binding protein
[Enterococcus faecalis TX0104]
Length = 569
Score = 188 bits (476), Expect = 1e-45, Method: Composition-based stats.
Identities = 59/284 (20%), Positives = 109/284 (38%), Gaps = 11/284 (3%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
I V + + + + + + W A+T + + +L++ +GY L
Sbjct: 295 IATVVVIVAGLVGASIFTTTNDKQISLSYVEWDTEVASTHVVAEVLKD-MGYDVKTTPLD 353
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+ + S+ D +G W P ++ + + ENL+GAK + V
Sbjct: 354 NAIMWESVAKGETDAMVGAWLPGTHAEQYKQYKD-KLDDLGENLKGAKLGIVVPSYM--- 409
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
I + G KI GIEPG +LK + + +S A +
Sbjct: 410 ---DVDSIEDLSDQAGKKITGIEPGAGVVAAAEKTKEAYP-NLKDWSVETSSSGAMTVTL 465
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
+ +NN V W PH + + ++ YL + G GE +++T+ R + P +
Sbjct: 466 GQAIKNNEDIVITGWSPHWMFAKYDLKYLADPKGTMG-GEEAIHTMARQGLKEDQPEAYK 524
Query: 244 LLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
+L N ++ +M I N +D Q R + +H D + W
Sbjct: 525 VLDNFHWTTKDMESVMLEI-NEGKDPQEAARDWVDSHKDQVAEW 567
>gi|281492007|ref|YP_003353987.1| glycine betaine/carnitine/choline ABC transporter
permease/substrate-binding protein [Lactococcus lactis
subsp. lactis KF147]
gi|281375716|gb|ADA65220.1| Glycine betaine/carnitine/choline ABC transporter, permease and
substrate-binding protein [Lactococcus lactis subsp.
lactis KF147]
Length = 573
Score = 188 bits (476), Expect = 1e-45, Method: Composition-based stats.
Identities = 54/284 (19%), Positives = 104/284 (36%), Gaps = 11/284 (3%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP 65
+ L + FS S V W A+ + + ++E G+ L
Sbjct: 301 LLALIVGAFSGMSFGKTASDKKVDLVYMNWDSEVASINVLTQAMKEH-GFDVKTTALDNA 359
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
V ++++ N D + W P+ K + + L+ NL+GAK V
Sbjct: 360 VAWQTVANGQADGMVSAWLPNTHKTQWQKYGKS-VDLLGPNLKGAKVGFVVPSYM----- 413
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
+ I + I GIEPG +N+ +LK ++L+ +S A +
Sbjct: 414 -NVNSIEDLTNQANKTITGIEPGAGVMAASEKTLNSYD-NLKDWKLVPSSSGAMTVALGE 471
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
+ + V W PH + + ++ YL + G E ++ T+VR + P ++L
Sbjct: 472 AIKQHKDIVITGWSPHWMFNKYDLKYLADPKGTMGTSE-NINTIVRKGLKKENPEAYKVL 530
Query: 246 KNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
++ +M I N + + + ++ H + W
Sbjct: 531 DKFNWTTKDMEAVMLDI-QNGKTPEEAAKNWIKDHQKEVDKWFK 573
>gi|229145363|ref|ZP_04273752.1| Glycine betaine-binding protein [Bacillus cereus BDRD-ST24]
gi|228638202|gb|EEK94643.1| Glycine betaine-binding protein [Bacillus cereus BDRD-ST24]
Length = 285
Score = 188 bits (476), Expect = 1e-45, Method: Composition-based stats.
Identities = 71/291 (24%), Positives = 124/291 (42%), Gaps = 12/291 (4%)
Query: 2 YKILAVCLFL---TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
KI +CL L F+ A +A+S ++ T W + AT M V+LEE GYK
Sbjct: 3 KKIWFICLALFITMIFTSCNATNANSKGKIKLGVTSWKENIATANMWKVLLEEK-GYKVE 61
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ L + + +D + W P +K + ++ I L ++ +G L V
Sbjct: 62 LMYLEKAAIWTGVARGDVDANLEVWLPVTDKPLNDRYKD-DIVLKSKWYEGTGLGLVVPS 120
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
I S +D+ +K EL KI GIEPG+ + L +L+++SE A
Sbjct: 121 Y--MKNINSIEDLNAHKDELDNKIVGIEPGSSLMNLTNKAMKEYDIKL---KLVQSSEAA 175
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
S++++ P W PH S+ ++ YL +++ G + +Y VR +
Sbjct: 176 MMSELKKAYTKKKPIAVTLWNPHWGFSEFDLKYLKDPKKVYGEKD-DIYYSVRKGFEKDH 234
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
P+I + K + +M LN +D + R ++ + L+ W+
Sbjct: 235 PDIIKYFDKWKMNDEQLGTLMVE-LNKTKDPEEAARKWIKNNQALVDEWVK 284
>gi|225869714|ref|YP_002745661.1| glycine-betaine binding permease protein [Streptococcus equi subsp.
equi 4047]
gi|225699118|emb|CAW92301.1| putative glycine-betaine binding permease protein [Streptococcus
equi subsp. equi 4047]
Length = 576
Score = 188 bits (476), Expect = 1e-45, Method: Composition-based stats.
Identities = 56/294 (19%), Positives = 106/294 (36%), Gaps = 18/294 (6%)
Query: 2 YKILAVCLFLTTFSISY--------ARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL 53
K L + + + AD V A W A+T + + +L +
Sbjct: 290 KKWLGLAALAVFLLSALGRGFAAMLSSSADKGQKVTIAYVQWDSEVASTHVIAQVLRDE- 348
Query: 54 GYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
GY+ + L V ++++ N D W P + + + + NL+G K
Sbjct: 349 GYQVTLTPLDNAVMWQTIANGDADFSTSAWLPVTHQQQYQKYQ-DKLDNLGPNLKGTKLG 407
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
LAV I + + +I GIEPG +L + L+
Sbjct: 408 LAVPAYMSD-----VNSIEELSDQANQQIIGIEPGAGIMTAADKTQKAYS-NLADWELVA 461
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
AS A + + + + P V +W PH + + ++ YL ++ G E ++ T+ R
Sbjct: 462 ASTGAMTTSLDQAVKKKEPIVVTAWSPHWMFAKYDLKYLADPKKTFGSKE-NINTIARRG 520
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
P + R++ + + +M I N + + + +H D + W
Sbjct: 521 LKADLPAVHRIVDHFHWEKEDMEAVMLDI-NQGMTPEAAAKKWVASHADKVAKW 573
>gi|315924093|ref|ZP_07920319.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, membrane/binding protein
[Pseudoramibacter alactolyticus ATCC 23263]
gi|315622495|gb|EFV02450.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, membrane/binding protein
[Pseudoramibacter alactolyticus ATCC 23263]
Length = 576
Score = 188 bits (476), Expect = 1e-45, Method: Composition-based stats.
Identities = 59/283 (20%), Positives = 106/283 (37%), Gaps = 11/283 (3%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
+ L + + + S ++ A W A+T + + +L++ GYK + L
Sbjct: 303 VVAALVMIGVVAAARIGSGSQQEIKLAYVQWDSEVASTHVIAEVLKDQ-GYKVTLIPLDN 361
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
V + S+ D + W P+ + + + + NL GAK L V D
Sbjct: 362 AVMWESVARGESDAMVSAWLPNTHRAQYKQYRK-ELVNLGANLTGAKLGLVVPDYM---- 416
Query: 125 IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
IA E G + GIE G+ + +LKG+++ S + +
Sbjct: 417 --RVDSIADLSTEAGQTVTGIEAGSGVVTAAEKTVKTYP-NLKGWKVTTTSSGTMATALG 473
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
+ + P + W PH + ++ YL G E V T+ R P R+
Sbjct: 474 KAIDQHQPIIVTGWSPHWMFQKYHLKYLKDPRGTMGKAE-HVSTMARKGLKSDMPKAYRI 532
Query: 245 LKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
L + ++ + +M I N D + R ++ HPD + W
Sbjct: 533 LNHFHWTTDDISSVMLDI-QNGMDPEKAARKWVKAHPDQVARW 574
>gi|225867769|ref|YP_002743717.1| glycine-betaine binding permease [Streptococcus equi subsp.
zooepidemicus]
gi|225701045|emb|CAW97837.1| putative glycine-betaine binding permease protein [Streptococcus
equi subsp. zooepidemicus]
Length = 576
Score = 188 bits (476), Expect = 1e-45, Method: Composition-based stats.
Identities = 56/294 (19%), Positives = 106/294 (36%), Gaps = 18/294 (6%)
Query: 2 YKILAVCLFLTTFSISY--------ARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL 53
K L + + + AD V A W A+T + + +L +
Sbjct: 290 KKWLGLAALAVFLLSALGRGFAAMLSSSADKGQKVTIAYVQWDSEVASTHVIAQVLRDE- 348
Query: 54 GYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
GY+ + L V ++++ N D W P + + + + NL+G K
Sbjct: 349 GYQVTLTPLDNAVMWQTIANGDADFSTSAWLPVTHQQQYQKYQ-DKLDNLGPNLKGTKLG 407
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
LAV I + + +I GIEPG +L + L+
Sbjct: 408 LAVPAYMSD-----VNSIEELSDQANQQIIGIEPGAGIMTAADKTQKAYS-NLADWELVA 461
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
AS A + + + + P V +W PH + + ++ YL ++ G E ++ T+ R
Sbjct: 462 ASTGAMTTSLDQAVKKKEPIVVTAWSPHWMFAKYDLKYLADPKKTFGSKE-NINTIARRG 520
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
P + R++ + + +M I N + + + +H D + W
Sbjct: 521 LKADLPAVHRIVDHFHWEKEDMEAVMLDI-NQGMTPEAAAKKWVASHADKVAKW 573
>gi|77409771|ref|ZP_00786425.1| amino acid ABC transporter, permease protein [Streptococcus
agalactiae COH1]
gi|77171620|gb|EAO74835.1| amino acid ABC transporter, permease protein [Streptococcus
agalactiae COH1]
Length = 575
Score = 188 bits (476), Expect = 1e-45, Method: Composition-based stats.
Identities = 47/273 (17%), Positives = 103/273 (37%), Gaps = 11/273 (4%)
Query: 17 SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGI 76
+ + V+ A W A+T + + +L+ GY + L V ++++ N
Sbjct: 314 MTSGNEAKGQKVKIAYVQWDSEVASTNVIAEVLKSK-GYDVELTPLDNAVMWQTVANGNA 372
Query: 77 DIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKK 136
D W P + S+ + +++ K L V + I +
Sbjct: 373 DFTTSAWLPKTHGQYFNKY-KNSLDDLGPHVENVKIGLVVPKYM------NVNSIEELSN 425
Query: 137 ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFL 196
+ +I GIEPG + + + +L ++L+ AS A + + + +N V
Sbjct: 426 QADKQITGIEPGAGIMKSAKQSLKDYP-NLSSWKLLSASTGAMTTTLGKAIKNKDQVVIT 484
Query: 197 SWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALEN 256
W PH + + ++ YL ++ G GE + T+ R + P + +++ K++
Sbjct: 485 GWSPHWMFAKYDLKYLKDPKKSFG-GEEHINTIARKNLKKDMPKVYKIIDKFKWTKEDME 543
Query: 257 EMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+M + + + ++ H + W
Sbjct: 544 SIMLDMD-KGMEPAKAAQKWIKNHKKEVSEWTK 575
>gi|229190886|ref|ZP_04317877.1| Glycine betaine-binding protein [Bacillus cereus ATCC 10876]
gi|228592554|gb|EEK50382.1| Glycine betaine-binding protein [Bacillus cereus ATCC 10876]
Length = 285
Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats.
Identities = 71/291 (24%), Positives = 124/291 (42%), Gaps = 12/291 (4%)
Query: 2 YKILAVCLFL---TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
KI +CL L F+ A +A+S ++ T W + AT M V+LEE GYK
Sbjct: 3 KKIWFICLALFITMIFTSCNATNANSKGKIKLGVTSWKENIATANMWKVLLEEK-GYKVE 61
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ L + + +D + W P +K + ++ I L ++ +G L V
Sbjct: 62 LMYLEKAAIWTGVARGDVDANLEVWLPVTDKPLNDRYKD-DIVLKSKWYEGTGLGLVVPS 120
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
I S +D+ +K EL KI GIEPG+ + L +L+++SE A
Sbjct: 121 Y--MKNINSIEDLNAHKDELENKIVGIEPGSSLMNLTNKAMKEYDIKL---KLVQSSEAA 175
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
S++++ P W PH S+ ++ YL +++ G + +Y VR +
Sbjct: 176 MMSELKKAYTKKKPIAVTLWNPHWGFSEFDLKYLKDPKKVYGEKD-DIYYSVRKGFEKDH 234
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
P+I + K + +M LN +D + R ++ + L+ W+
Sbjct: 235 PDIIKYFDKWKMNDEQLGTLMVE-LNKTKDPEEAARKWIKKNQALVDEWVK 284
>gi|29347159|ref|NP_810662.1| glycine betaine-binding protein [Bacteroides thetaiotaomicron
VPI-5482]
gi|29339058|gb|AAO76856.1| glycine betaine-binding protein precursor [Bacteroides
thetaiotaomicron VPI-5482]
Length = 277
Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats.
Identities = 54/281 (19%), Positives = 111/281 (39%), Gaps = 9/281 (3%)
Query: 8 CLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVT 67
+ + D + A W++ A T + I E+ GY + +
Sbjct: 2 FIAGILLTFVSCGDNGKSKKISIAYANWSEGIAMTNLAKAIFEDQ-GYDVKLLNADLAPI 60
Query: 68 FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKS 127
F S+ K D+FM W P + + ++++ + GA+ L V D I S
Sbjct: 61 FTSISRKKADVFMDVWMPVTMEDYMKQYGD-KLEVIGDIYDGARIGLVVPDYV---TINS 116
Query: 128 YQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQ 187
+++ K+ +I GI+ G + I + ++L+ +S A + +++
Sbjct: 117 IEELNAEKERFSGQIVGIDAGAGIMKATDQAIKDYGLD---YKLMTSSGPAMTASLKKAI 173
Query: 188 RNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKN 247
V W PH + + L + I G E+ ++T+ + +K P + LL N
Sbjct: 174 DKKDWIVVTGWTPHWMFDRFKLKVLQDPKLIYGNTES-IHTIAWKGFSEKDPFAAELLGN 232
Query: 248 IKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
I+ + A + +M + + + R + H +L+ +W+
Sbjct: 233 IRLTDAEISSLMTALEEAQTTERQAARQWMEEHQELVNSWI 273
>gi|30262759|ref|NP_845136.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein, putative [Bacillus
anthracis str. Ames]
gi|47528080|ref|YP_019429.1| glycine betaine/L-proline ABC transporter glycine
betaine/L-proline-binding protein [Bacillus anthracis
str. 'Ames Ancestor']
gi|49185605|ref|YP_028857.1| glycine betaine/L-proline ABC transporter glycine
betaine/L-proline-binding protein [Bacillus anthracis
str. Sterne]
gi|49479128|ref|YP_036876.1| glycine betaine-binding protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|165869201|ref|ZP_02213861.1| putative glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Bacillus anthracis
str. A0488]
gi|167631933|ref|ZP_02390260.1| putative glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Bacillus anthracis
str. A0442]
gi|167637919|ref|ZP_02396198.1| putative glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Bacillus anthracis
str. A0193]
gi|170685316|ref|ZP_02876540.1| putative glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Bacillus anthracis
str. A0465]
gi|170704662|ref|ZP_02895128.1| putative glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Bacillus anthracis
str. A0389]
gi|177649654|ref|ZP_02932656.1| putative glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Bacillus anthracis
str. A0174]
gi|190565346|ref|ZP_03018266.1| putative glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Bacillus anthracis
Tsiankovskii-I]
gi|196032180|ref|ZP_03099594.1| putative glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Bacillus cereus W]
gi|196043214|ref|ZP_03110452.1| putative glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Bacillus cereus
03BB108]
gi|225864764|ref|YP_002750142.1| putative glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Bacillus cereus
03BB102]
gi|227814401|ref|YP_002814410.1| putative glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Bacillus anthracis
str. CDC 684]
gi|228915389|ref|ZP_04078982.1| Glycine betaine-binding protein [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228927839|ref|ZP_04090887.1| Glycine betaine-binding protein [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228934063|ref|ZP_04096904.1| Glycine betaine-binding protein [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228946398|ref|ZP_04108719.1| Glycine betaine-binding protein [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229091792|ref|ZP_04222991.1| Glycine betaine-binding protein [Bacillus cereus Rock3-42]
gi|229122334|ref|ZP_04251548.1| Glycine betaine-binding protein [Bacillus cereus 95/8201]
gi|229603623|ref|YP_002867066.1| putative glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Bacillus anthracis
str. A0248]
gi|254685351|ref|ZP_05149211.1| putative glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Bacillus anthracis
str. CNEVA-9066]
gi|254722759|ref|ZP_05184547.1| putative glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Bacillus anthracis
str. A1055]
gi|254737807|ref|ZP_05195510.1| putative glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Bacillus anthracis
str. Western North America USA6153]
gi|254743019|ref|ZP_05200704.1| putative glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Bacillus anthracis
str. Kruger B]
gi|254752121|ref|ZP_05204158.1| putative glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Bacillus anthracis
str. Vollum]
gi|254760642|ref|ZP_05212666.1| putative glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Bacillus anthracis
str. Australia 94]
gi|30257391|gb|AAP26622.1| putative glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Bacillus anthracis
str. Ames]
gi|47503228|gb|AAT31904.1| putative glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Bacillus anthracis
str. 'Ames Ancestor']
gi|49179532|gb|AAT54908.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein, putative [Bacillus
anthracis str. Sterne]
gi|49330684|gb|AAT61330.1| glycine betaine-binding protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|164715927|gb|EDR21444.1| putative glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Bacillus anthracis
str. A0488]
gi|167514468|gb|EDR89835.1| putative glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Bacillus anthracis
str. A0193]
gi|167532231|gb|EDR94867.1| putative glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Bacillus anthracis
str. A0442]
gi|170130463|gb|EDS99324.1| putative glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Bacillus anthracis
str. A0389]
gi|170670676|gb|EDT21415.1| putative glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Bacillus anthracis
str. A0465]
gi|172084728|gb|EDT69786.1| putative glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Bacillus anthracis
str. A0174]
gi|190563373|gb|EDV17338.1| putative glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Bacillus anthracis
Tsiankovskii-I]
gi|195994931|gb|EDX58885.1| putative glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Bacillus cereus W]
gi|196025523|gb|EDX64192.1| putative glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Bacillus cereus
03BB108]
gi|225790754|gb|ACO30971.1| putative glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Bacillus cereus
03BB102]
gi|227006991|gb|ACP16734.1| putative glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Bacillus anthracis
str. CDC 684]
gi|228661183|gb|EEL16809.1| Glycine betaine-binding protein [Bacillus cereus 95/8201]
gi|228691574|gb|EEL45328.1| Glycine betaine-binding protein [Bacillus cereus Rock3-42]
gi|228813261|gb|EEM59561.1| Glycine betaine-binding protein [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228825577|gb|EEM71369.1| Glycine betaine-binding protein [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228831902|gb|EEM77491.1| Glycine betaine-binding protein [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228844332|gb|EEM89390.1| Glycine betaine-binding protein [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|229268031|gb|ACQ49668.1| putative glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Bacillus anthracis
str. A0248]
Length = 285
Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats.
Identities = 70/291 (24%), Positives = 124/291 (42%), Gaps = 12/291 (4%)
Query: 2 YKILAVCLFL---TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
KI +CL L F+ A +A+S ++ T W + AT M V+LE+ GYK
Sbjct: 3 KKIWFICLALFITMIFTSCNATNANSKGKIKLGVTSWKENIATANMWKVLLEQK-GYKVE 61
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ L + + +D + W P +K + ++ I L ++ +G L V
Sbjct: 62 LMYLEKAAIWTGVARGDVDANLEVWLPVTDKPLNDRYKD-DIVLKSKWYEGTGLGLVVPS 120
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
I S +D+ +K EL KI GIEPG+ + L +L+++SE A
Sbjct: 121 Y--MKNISSIEDLNAHKDELDNKIVGIEPGSSLMNLTNKAMKEYDIKL---KLVQSSEAA 175
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
S++++ P W PH S+ ++ YL +++ G + +Y VR +
Sbjct: 176 LMSELKKAYTKKKPIAVTLWNPHWGFSEFDLKYLKDPKKVYGEKD-DIYYSVRKGFEKDH 234
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
P+I + K + +M LN +D + R ++ + L+ W+
Sbjct: 235 PDIIKYFDKWKMNDEQLGTLMVE-LNKTKDPEEAARKWIKKNQALVDEWIK 284
>gi|319745717|gb|EFV98014.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, membrane/binding protein
[Streptococcus agalactiae ATCC 13813]
Length = 575
Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats.
Identities = 48/273 (17%), Positives = 103/273 (37%), Gaps = 11/273 (4%)
Query: 17 SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGI 76
+ + V+ A W A+T + S +L+ GY + L V ++++ N
Sbjct: 314 MTSGNEAKGQKVKIAYVQWDSEVASTNVISEVLKSK-GYDVELTPLDNAVMWQTVANGNA 372
Query: 77 DIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKK 136
D W P + S+ + +++ K L V + I +
Sbjct: 373 DFTTSAWLPKTHGQYFNKY-KNSLDDLGPHVENVKIGLVVPKYM------NVNSIEELSN 425
Query: 137 ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFL 196
+ +I GIEPG + + + +L ++L+ AS A + + + +N V
Sbjct: 426 QADKQITGIEPGAGIMKSAKQSLKDYP-NLSSWKLLSASTGAMTTTLGKAIKNKDQVVIT 484
Query: 197 SWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALEN 256
W PH + + ++ YL ++ G GE + T+ R + P + +++ K++
Sbjct: 485 GWSPHWMFAKYDLKYLKDPKKSFG-GEEHINTIARKNLKKDMPKVYKIIDKFKWTKEDME 543
Query: 257 EMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+M + + + ++ H + W
Sbjct: 544 SIMLDMD-KGMEPAKAAQKWIKNHKKEVSEWTK 575
>gi|218235566|ref|YP_002367505.1| putative glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Bacillus cereus
B4264]
gi|218163523|gb|ACK63515.1| putative glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Bacillus cereus
B4264]
Length = 285
Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats.
Identities = 70/291 (24%), Positives = 125/291 (42%), Gaps = 12/291 (4%)
Query: 2 YKILAVCLFL---TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
KI +CL L F+ A +A+S ++ T W + AT M V+LEE GYK
Sbjct: 3 KKIWFICLALFITMIFTSCNATNANSKGKIKLGVTSWKENIATANMWKVLLEEK-GYKVE 61
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ L + + +D + W P +K + ++ I L ++ +G L V
Sbjct: 62 LMYLEKAAIWTGVARGDVDANLEVWLPVTDKPLNDRYKD-DIVLKSKWYEGTGLGLVVPS 120
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
I S +D+ +K EL KI GIEPG+ + L +L+++SE A
Sbjct: 121 Y--MKNINSIEDLNAHKDELDNKIVGIEPGSSLMNLTNKAMTEYDIKL---KLVQSSEAA 175
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
S++++ P W PH S+ ++ YL +++ G + +Y VR +
Sbjct: 176 MMSELKKAYTKKKPIAVTLWNPHWGFSEFDLKYLKDPKKVYGEKD-DIYYSVRKGFEKDH 234
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
P++ + K + +M +LN +D + R ++ + L+ W+
Sbjct: 235 PDVIKYFDKWKMNDEQLGTLMV-MLNKTKDPEEAARKWIKKNQALVDEWVK 284
>gi|332364432|gb|EGJ42206.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Streptococcus sanguinis
SK355]
Length = 574
Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats.
Identities = 57/291 (19%), Positives = 111/291 (38%), Gaps = 17/291 (5%)
Query: 3 KILAVCLFLTTFSISYAR------DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
KI+ ++ V A W A+T + + L+E +GY
Sbjct: 293 KIMLWSALAAVILTAFVGNQVTKLQQSKKEKVNLAYVEWDSEVASTNVVAEALKE-MGYD 351
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
I L V ++S+ N D + W P+ + ++ + + NL+G K L V
Sbjct: 352 VTITPLDNAVMWKSVANSEADAMVSAWLPTTHAALYEEYKD-KLVDLGPNLEGVKTGLVV 410
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ I + I GIEPG + +L G+ L +S
Sbjct: 411 PNYM------DADSIEDLSDQAKKTITGIEPGAGIMTATEKTMQEYS-NLSGWNLSSSST 463
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
A + + + +N + W PH + S ++ YL + G G+ +++T+ R +
Sbjct: 464 GAMTTALDQAIKNKEDIIVTGWSPHWMFSKYDLKYLKDPKGTMG-GKEAIHTITRKNLDK 522
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
P ++++L N ++ E+M I N + + ++ H +++W
Sbjct: 523 DLPEVNKVLDNFNWTQKDMEEVMLKI-NEGSSPEAAAKEWIKNHQKEIESW 572
>gi|330501436|ref|YP_004378305.1| glycine betaine ABC transporter substrate-binding protein
[Pseudomonas mendocina NK-01]
gi|328915722|gb|AEB56553.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas mendocina NK-01]
Length = 283
Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats.
Identities = 64/291 (21%), Positives = 115/291 (39%), Gaps = 10/291 (3%)
Query: 1 MYKILAVCLFLTTFSISYARD-ADSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTN 58
M + +CL +I A ++ W D A T + IL+ LGY
Sbjct: 1 MRVLKHLCLGAAALAIGMGSAFAADKPTLKIGYVNGWDDSVAVTHVAGEILQSKLGYTVE 60
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+K + + ++ + +D + W P+ L++ ++++ N GAK L V D
Sbjct: 61 LKPVEPAIMWQGVARGDLDATLSAWLPATHGEYYEKLKD-KVEVLGTNYSGAKIGLIVPD 119
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
A KS +D+ KY K+ KI GI+ G +R + I +L+ +S A
Sbjct: 120 YVQA---KSIEDLEKYAKDFDGKITGIDAGAGVMRRTEEAIKEYNL--ASIKLMPSSGPA 174
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+ + R ++ P V W PH + + + +L +++ G + V TV K
Sbjct: 175 MATALTRAEKAQKPIVVTGWIPHWMFAKWKLRFLEDPKKVFGD-DERVDTVANPQLKGKA 233
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+ + L I +S +M I + + +PD + WL
Sbjct: 234 ADAAAFLSKISWSGEEVGSVMLAI-REGAKPDEAAKDWIAKNPDRVAEWLK 283
>gi|53714620|ref|YP_100612.1| glycine betaine-binding protein [Bacteroides fragilis YCH46]
gi|265765916|ref|ZP_06093957.1| glycine betaine-binding protein [Bacteroides sp. 2_1_16]
gi|52217485|dbj|BAD50078.1| glycine betaine-binding protein precursor [Bacteroides fragilis
YCH46]
gi|263253584|gb|EEZ25049.1| glycine betaine-binding protein [Bacteroides sp. 2_1_16]
Length = 284
Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats.
Identities = 64/289 (22%), Positives = 120/289 (41%), Gaps = 9/289 (3%)
Query: 1 MYKILAVCLFLTTFSISYARDADS-CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M K + L + A + DS + A W + A + + V+LEE GY+ +
Sbjct: 1 MRKYRIIGSLLLLAVMCVACNPDSGKKKISIAYANWLEGIAMSHLAKVVLEEK-GYEVEL 59
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
V F S+ K D+FM W P K + I+ + E A+ L V
Sbjct: 60 LNADVAPVFASVSRKKADVFMDAWLPVTMKDYIDQYGD-QIEFIGEVYDSARVGLVVPQY 118
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
I S ++A +K + ++I GI+ G + I + G++L+ +S
Sbjct: 119 V---TIDSIGELAAHKGQFSSEIVGIDAGAGIMKTTDKAIGDYGLD--GYKLLTSSSSTM 173
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+ +++ V W PH + + +L + G E+ +Y V + +K P
Sbjct: 174 LASLQKAMEKEAWIVITGWTPHWMFDRYPLKFLHDPKGTYGNVES-IYVVGWKGFTEKDP 232
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
++ NIKF+ + +MK + + + D + + R H +L+++W+
Sbjct: 233 FAAKFFSNIKFTTEEISSLMKALKDARMDEEDLVRKWRDEHRELVESWI 281
>gi|255016498|ref|ZP_05288624.1| glycine betaine-binding protein precursor [Bacteroides sp. 2_1_7]
Length = 297
Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats.
Identities = 62/289 (21%), Positives = 113/289 (39%), Gaps = 13/289 (4%)
Query: 1 MYK---ILAVCLFLTTF-SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
M + I+ C+ L T I D+ + A W + A T + VILE+ GY+
Sbjct: 1 MRRFTIIIGCCMLLVTLQFIFSCVDSKDRKKISIAYANWAEGIAMTNLAKVILEDQ-GYR 59
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+K + F S+ + D+FM W P + ++ + + AK L V
Sbjct: 60 VTLKNADIAPIFTSVASGKADVFMDAWLPVTHADYMEQYGD-RLETLGTVYEHAKLGLVV 118
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ I+S +D+ +K + +I GI+ G + + F L +S
Sbjct: 119 PEYV---TIRSIEDLNAHKDQFKGEIIGIDAGAGLMNSADKAVQDYSLD---FDLKSSSG 172
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
+ +++ N V W PH + S + +L +E G E + + +
Sbjct: 173 ATMVAFLKKSIDANEWIVVTGWTPHWMFSRYPLKFLEDPKEEFGDSE-HIEVIATKGFSK 231
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLK 285
K P + KN K + +E+M + + + R L HP+++K
Sbjct: 232 KDPYAASFFKNFKLTDEQLSELMYYMEDGTRTESRSARVWLEKHPEIIK 280
>gi|206971845|ref|ZP_03232794.1| putative glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Bacillus cereus
AH1134]
gi|206733230|gb|EDZ50403.1| putative glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Bacillus cereus
AH1134]
Length = 285
Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats.
Identities = 71/291 (24%), Positives = 124/291 (42%), Gaps = 12/291 (4%)
Query: 2 YKILAVCLFL---TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
KI +CL L F+ A +A+S ++ T W + AT M V+LEE GYK
Sbjct: 3 KKIWFICLALFITMIFTSCNATNANSKGKIKLGVTSWKENIATANMWKVLLEEK-GYKVE 61
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ L + + +D + W P +K + ++ I L ++ +G L V
Sbjct: 62 LMYLEKAAIWTGVARGDVDANLEVWLPVTDKPLNDRYKD-DIVLKSKWYEGTGLGLVVPS 120
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
I S +D+ +K EL KI GIEPG+ + L +L+++SE A
Sbjct: 121 Y--MKNINSIEDLNAHKDELENKIVGIEPGSSLMNLTNKAMKEYDIKL---KLVQSSEAA 175
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
S++++ P W PH S+ ++ YL +++ G + +Y VR +
Sbjct: 176 MMSELKKAYTKKKPITVTLWNPHWGFSEFDLKYLKDPKKVYGEKD-DIYYSVRKGFEKDH 234
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
P+I + K + +M LN +D + R ++ + L+ W+
Sbjct: 235 PDIIKYFDKWKMNDEQLGTLMVE-LNKTKDPEEAARKWIKKNQALVDEWVK 284
>gi|229070267|ref|ZP_04203517.1| Glycine betaine-binding protein [Bacillus cereus F65185]
gi|229079978|ref|ZP_04212509.1| Glycine betaine-binding protein [Bacillus cereus Rock4-2]
gi|229150999|ref|ZP_04279210.1| Glycine betaine-binding protein [Bacillus cereus m1550]
gi|229179073|ref|ZP_04306430.1| Glycine betaine-binding protein [Bacillus cereus 172560W]
gi|228604441|gb|EEK61905.1| Glycine betaine-binding protein [Bacillus cereus 172560W]
gi|228632559|gb|EEK89177.1| Glycine betaine-binding protein [Bacillus cereus m1550]
gi|228703357|gb|EEL55812.1| Glycine betaine-binding protein [Bacillus cereus Rock4-2]
gi|228712831|gb|EEL64756.1| Glycine betaine-binding protein [Bacillus cereus F65185]
Length = 285
Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats.
Identities = 71/291 (24%), Positives = 124/291 (42%), Gaps = 12/291 (4%)
Query: 2 YKILAVCLFL---TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
KI +CL L F+ A +A+S ++ T W + AT M V+LEE GYK
Sbjct: 3 KKIWFICLALFITMIFTSCNATNANSKGKIKLGVTSWKENIATANMWKVLLEEK-GYKVE 61
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ L + + +D + W P +K + ++ I L ++ +G L V
Sbjct: 62 LMYLEKAAIWTGVARGDVDANLEVWLPVTDKPLNDRYKD-DIVLKSKWYEGTGLGLVVPS 120
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
I S +D+ +K EL KI GIEPG+ + L +L+++SE A
Sbjct: 121 Y--MKNINSIEDLNAHKDELENKIVGIEPGSSLMNLTNKAMKEYDIKL---KLVQSSEAA 175
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
S++++ P W PH S+ ++ YL +++ G + +Y VR +
Sbjct: 176 MMSELKKAYTKKKPIAVTLWNPHWGFSEFDLKYLKDPKKVYGEKD-DIYYSVRKGFEKDH 234
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
P+I + K + +M LN +D + R ++ + L+ W+
Sbjct: 235 PDIIKYFDKWKMNDEQLGTLMVE-LNKTKDPEEAARKWIKKNQALVDEWIK 284
>gi|299149361|ref|ZP_07042418.1| glycine betaine/L-proline ABC transporter,periplasmic
substrate-binding protein [Bacteroides sp. 3_1_23]
gi|298512548|gb|EFI36440.1| glycine betaine/L-proline ABC transporter,periplasmic
substrate-binding protein [Bacteroides sp. 3_1_23]
Length = 287
Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats.
Identities = 57/288 (19%), Positives = 118/288 (40%), Gaps = 8/288 (2%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+YK++ + L S + V+ A W + A + + V+LEE GY+ ++
Sbjct: 3 IYKLVGIVLSALLLLASCTNSDPNKKKVKIAYANWLEGIAMSHLAKVVLEEH-GYEVELQ 61
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ F S+ K D+F+ W P K + I+ + E + A+ L V +
Sbjct: 62 NADLAPVFVSMSRKKSDVFLDAWLPITMKDYMDQYGDS-IEFLGEVYEEARIGLVVPEYV 120
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
I+S ++A YK ++I GI+ G + I G+ L+ +S
Sbjct: 121 ---TIQSISELADYKDRFSSEIVGIDAGAGIMKTTDKAIAAYGLD--GYALMTSSSSTML 175
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ +++ V W PH + ++ +L +++ G ++ + + +K P
Sbjct: 176 ASLKKAMDKGEWIVITGWTPHWMFDQFDLKFLDDPKKVYGD-LEEIHAIAWKGFSEKDPF 234
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+ NIK + + M + + + D + + R H +L+ +W+
Sbjct: 235 AAEFFGNIKLTTEELSSFMTAMKDARMDEEEIARKWRDEHRELVDSWI 282
>gi|228985881|ref|ZP_04146029.1| Glycine betaine-binding protein [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228773810|gb|EEM22228.1| Glycine betaine-binding protein [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 285
Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats.
Identities = 70/291 (24%), Positives = 125/291 (42%), Gaps = 12/291 (4%)
Query: 2 YKILAVCLFL---TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
KI +CL L F+ A +A+S ++ T W + AT M V+LE+ GYK
Sbjct: 3 KKIWFICLALFITMIFTSCNATNANSKGKIKLGVTSWKENIATANMWKVLLEQK-GYKVE 61
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ L + + +D + W P +K + ++ I L ++ +G L V
Sbjct: 62 LMYLEKAAIWTGVARGDVDANLEVWLPVTDKPLNDRYKD-DIVLKSKWYEGTGLGLVVP- 119
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ I S +D+ +K EL KI GIEPG+ + L +L+++SE A
Sbjct: 120 -FYMKNINSIEDLNAHKDELDNKIVGIEPGSSLMNLTNKAMKEYDIKL---KLVQSSEAA 175
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
S++++ P W PH S+ ++ YL +++ G + +Y VR +
Sbjct: 176 MMSELKKAYTKKKPIAVTLWNPHWGFSEFDLKYLKDPKKVYGEKD-DIYYSVRKGFEKDH 234
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
P+I + K + +M LN +D + R ++ + L+ W+
Sbjct: 235 PDIIKYFDKWKMNDEQLGTLMVE-LNKTKDPEEAARKWIKNNQALVDEWVK 284
>gi|218903910|ref|YP_002451744.1| putative glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Bacillus cereus
AH820]
gi|218537009|gb|ACK89407.1| putative glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Bacillus cereus
AH820]
Length = 285
Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats.
Identities = 70/291 (24%), Positives = 124/291 (42%), Gaps = 12/291 (4%)
Query: 2 YKILAVCLFL---TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
KI +CL L F+ A +A+S ++ T W + AT M V+LE+ GYK
Sbjct: 3 KKIWFICLALFITMIFTSCNATNANSKGKIKLGVTSWKENIATANMWKVLLEQK-GYKVE 61
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ L + + +D + W P +K + ++ I L ++ +G L V
Sbjct: 62 LMYLEKAAIWTGVVRGDVDANLEVWLPVTDKPLNDRYKD-DIVLKSKWYEGTGLGLVVPS 120
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
I S +D+ +K EL KI GIEPG+ + L +L+++SE A
Sbjct: 121 Y--MKNISSIEDLNAHKDELDNKIVGIEPGSSLMNLTNKAMKEYDIKL---KLVQSSEAA 175
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
S++++ P W PH S+ ++ YL +++ G + +Y VR +
Sbjct: 176 LMSELKKAYTKKKPIAVTLWNPHWGFSEFDLKYLKDPKKVYGEKD-DIYYSVRKGFEKDH 234
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
P+I + K + +M LN +D + R ++ + L+ W+
Sbjct: 235 PDIIKYFDKWKMNDEQLGTLMVE-LNKTKDPEEAARKWIKKNQALVDEWIK 284
>gi|116512254|ref|YP_809470.1| ABC-type proline/glycine betaine transport system, permease
component [Lactococcus lactis subsp. cremoris SK11]
gi|116107908|gb|ABJ73048.1| ABC-type proline/glycine betaine transport system, permease
component [Lactococcus lactis subsp. cremoris SK11]
Length = 573
Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats.
Identities = 54/284 (19%), Positives = 105/284 (36%), Gaps = 11/284 (3%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP 65
+ L + FS S V W A+ + + +EE + L
Sbjct: 301 LLALIVGAFSGMSFGKKSSDKKVDLVYMNWDSEVASINVLTQAMEEHS-FDVTTTALDNA 359
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
V ++++ N D + W P+ K + ++L+ NL+GAK V
Sbjct: 360 VAWQTVANSQADGMVSAWLPNTHKTQWKKYGKS-VELLGPNLKGAKVGFVVPSYM----- 413
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
+ I + I GIEPG + + + +LK ++L+ +S A +
Sbjct: 414 -NVNSIEDLTNQANKTITGIEPGAGVMAASENTLKSYS-NLKDWKLVPSSSGAMTVALGE 471
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
+ + V W PH + + ++ YL + G E ++ T+VR + P ++L
Sbjct: 472 AIKQHKDIVITGWSPHWMFNKYDLKYLADPKGTMGTSE-NINTIVRKGLKKENPEAYKVL 530
Query: 246 KNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
N ++ +M I N + + + ++ H + W
Sbjct: 531 NNFNWTTKDMESVMLDI-QNGKTPEAAAKAWIKDHQKQVDKWFK 573
>gi|300118750|ref|ZP_07056476.1| putative glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Bacillus cereus SJ1]
gi|298723907|gb|EFI64623.1| putative glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Bacillus cereus SJ1]
Length = 285
Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats.
Identities = 70/291 (24%), Positives = 124/291 (42%), Gaps = 12/291 (4%)
Query: 2 YKILAVCLFL---TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
KI +CL L F+ A +A+S ++ T W + AT M V+LE+ GYK
Sbjct: 3 KKIWFICLALFITMIFTSCNATNANSKGKIKLGVTSWKENIATANMWKVLLEQK-GYKVE 61
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ L + + +D + W P +K + ++ I L ++ +G L V
Sbjct: 62 LMYLEKAAIWTGVARGDVDANLEVWLPVTDKPLNNRYKD-DIVLKSKWYEGTGLGLVVPS 120
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
I S +D+ +K EL KI GIEPG+ + L +L+++SE A
Sbjct: 121 Y--MKNINSIEDLNAHKDELDNKIVGIEPGSSLMNLTNKAMKEYDIKL---KLVQSSEAA 175
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
S++++ P W PH S+ ++ YL +++ G + +Y VR +
Sbjct: 176 LMSELKKAYTKKKPIAVTLWNPHWGFSEFDLKYLKDPKKVYGEKD-DIYYSVRKGFEKDH 234
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
P+I + K + +M LN +D + R ++ + L+ W+
Sbjct: 235 PDIIKYFDKWKMNDEQLGTLMVE-LNKTKDPEEAARKWIKKNQTLVDEWIK 284
>gi|330943446|gb|EGH45793.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. pisi str. 1704B]
Length = 273
Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats.
Identities = 105/271 (38%), Positives = 163/271 (60%), Gaps = 5/271 (1%)
Query: 37 DIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE 96
D+ AT+AMT V+L + LGYKT + + F ++++ +D+F+GYW P + + I P++E
Sbjct: 1 DVIATSAMTQVLL-DGLGYKTKQTSASQQIIFAGIRDQRLDLFLGYWNPLMTQTITPFVE 59
Query: 97 EGSIKLVA-ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRI 155
IK++ +L+ A+ LAV G+KS+ DIA+++KELG KIYGIEPG+ N +I
Sbjct: 60 ARKIKVLDKPSLEDARATLAVPTYLADKGLKSFADIARFEKELGGKIYGIEPGSGANTQI 119
Query: 156 LDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG 215
MI N+F L F+L+E+SE + + R R VF W PHP+N ++ + YL G
Sbjct: 120 KAMIAKNQFGLGKFQLVESSEAGMLAAVDRAVRRKEAVVFFGWTPHPMNINVAMTYLNGS 179
Query: 216 EEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVG 273
++ G A+V+TV Y ++CPN+ +LL N+ F+ A E+ MM+ +L + +D
Sbjct: 180 DDALGPNEGMATVWTVTSPTYAEQCPNVHKLLTNLTFTAADESRMMQPLL-DHKDALESA 238
Query: 274 RTMLRTHPDLLKNWLIGVTTFDGQDPSRQLE 304
R L+ HP WL GVTTFDG+ + L+
Sbjct: 239 RQWLKDHPQDQARWLEGVTTFDGKPAAANLQ 269
>gi|76788447|ref|YP_330414.1| glycine betaine/proline ABC transporter permease/substrate-binding
protein [Streptococcus agalactiae A909]
gi|77406685|ref|ZP_00783726.1| amino acid ABC transporter, permease protein [Streptococcus
agalactiae H36B]
gi|77412028|ref|ZP_00788356.1| amino acid ABC transporter, permease protein [Streptococcus
agalactiae CJB111]
gi|76563504|gb|ABA46088.1| glycine betaine/proline ABC transporter, permease/substrate-binding
protein [Streptococcus agalactiae A909]
gi|77161934|gb|EAO72917.1| amino acid ABC transporter, permease protein [Streptococcus
agalactiae CJB111]
gi|77174704|gb|EAO77532.1| amino acid ABC transporter, permease protein [Streptococcus
agalactiae H36B]
Length = 575
Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats.
Identities = 47/273 (17%), Positives = 103/273 (37%), Gaps = 11/273 (4%)
Query: 17 SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGI 76
+ + V+ A W A+T + + +L+ GY + L V ++++ N
Sbjct: 314 MTSGNEAKGQKVKIAYVQWDSEVASTNVIAEVLKSK-GYDVELTPLDNAVMWQTVANGNA 372
Query: 77 DIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKK 136
D W P + S+ + +++ K L V + I +
Sbjct: 373 DFTTSAWLPKTHGQYFNKY-KNSLDDLGPHVENVKIGLVVPKYM------NVNSIEELSN 425
Query: 137 ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFL 196
+ +I GIEPG + + + +L ++L+ AS A + + + +N V
Sbjct: 426 QADKQITGIEPGAGIMKSAKQSLKDYP-NLSSWKLLSASTGAMTTTLGKAIKNKDQVVIT 484
Query: 197 SWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALEN 256
W PH + + ++ YL ++ G GE + T+ R + P + +++ K++
Sbjct: 485 GWSPHWMFAKYDLKYLKDPKKSFG-GEEHINTIARKNLKKDMPKVYKIIDKFKWTKEDME 543
Query: 257 EMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+M + + + ++ H + W
Sbjct: 544 SIMLDMD-KGMEPAKAAQKWIKNHKKEVSEWTK 575
>gi|94265175|ref|ZP_01288938.1| Substrate-binding region of ABC-type glycine betaine transport
system [delta proteobacterium MLMS-1]
gi|93454363|gb|EAT04667.1| Substrate-binding region of ABC-type glycine betaine transport
system [delta proteobacterium MLMS-1]
Length = 301
Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats.
Identities = 58/292 (19%), Positives = 111/292 (38%), Gaps = 8/292 (2%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+ K L + + + A P++ T W+D T +T +LE+ +GY+ +
Sbjct: 13 LKKSLTAAVIGGFMAATVAVAPAQADPIKIGWTAWSDAEFVTKLTQRVLEDEMGYEVKLI 72
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ ++ L + ID+ + W P+ + L + I + A+ AV D
Sbjct: 73 QTDIAPQYQGLASGDIDMMLMAWLPNTHEDYMAKLGD-RIVNLGPLYGYARLGWAVPDHI 131
Query: 121 FALGIKSYQDIAK--YKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
A + S +D+ K + +L +I GI+PG + I N G+ L +S
Sbjct: 132 PASELNSIEDLKKSSVRNKLNGRITGIDPGAGLTRLSQSTIENYGLD--GYDLQISSGAG 189
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
S + R R + V W PH + YL S G ++ + R + ++
Sbjct: 190 MTSALERAIRRDEWIVVTGWSPHWKFGAYELRYLEDPRG-SLGGLERIHALTRQGFPEEH 248
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIG 290
+ ++ I + + E M N + + +P + W+ G
Sbjct: 249 VEAAMMVTRIYLDLEVLEEAMFYAQEN--SYEEAVSRFINDYPQYIDYWVSG 298
>gi|254712526|ref|ZP_05174337.1| hypothetical protein BcetM6_03962 [Brucella ceti M644/93/1]
gi|254715598|ref|ZP_05177409.1| hypothetical protein BcetM_03982 [Brucella ceti M13/05/1]
gi|261217344|ref|ZP_05931625.1| conserved hypothetical protein [Brucella ceti M13/05/1]
gi|261320217|ref|ZP_05959414.1| conserved hypothetical protein [Brucella ceti M644/93/1]
gi|260922433|gb|EEX89001.1| conserved hypothetical protein [Brucella ceti M13/05/1]
gi|261292907|gb|EEX96403.1| conserved hypothetical protein [Brucella ceti M644/93/1]
Length = 288
Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats.
Identities = 61/288 (21%), Positives = 108/288 (37%), Gaps = 11/288 (3%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
+ + A A V+ W+D T + ++E+ LG K + V
Sbjct: 8 FGLAAVVAGTMTMGAAFAQDGKTVKIGWAPWSDAEFVTKLARKLIEDNLGQKVELVQTDV 67
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
++ + ID M W P + EG ++ + +GAK V D
Sbjct: 68 APLYQGVSRGDIDAMMMAWLPETHADYYKRV-EGKVENLGPLYEGAKLGWIVPDYIPESE 126
Query: 125 IKSYQDIAKY--KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
I S +D+ K +++L +I GI+PG + + I ++L +SE A +
Sbjct: 127 ISSIEDLKKPEVREKLKGEIQGIDPGAGLTRLSQEAIKKYGLD---YKLNISSEAAMLTT 183
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ R R+ V SW PH + + Y+ G G + V R + + P ++
Sbjct: 184 VDRANRSEGWFVATSWSPHWMFGKYKLRYIADPRGALG-GAEHIDAVARKGFKEDNPKVA 242
Query: 243 RLLKNIKFSVALENEMMKLI-LNNKQDRQFVGRTMLRTHPDLLKNWLI 289
LL + NE+ + + + + HPD +K WL
Sbjct: 243 ALLAKMSIP---INELEAAMFDAQETSYEKAVDKYIADHPDRIKEWLS 287
>gi|306841730|ref|ZP_07474416.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein, hypothetical [Brucella sp. BO2]
gi|306288135|gb|EFM59522.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein, hypothetical [Brucella sp. BO2]
Length = 288
Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats.
Identities = 60/288 (20%), Positives = 107/288 (37%), Gaps = 11/288 (3%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
+ + A A V+ W+D T + ++E+ LG K + V
Sbjct: 8 FGLAAVVAGTMTMGAAFAQDGKTVKIGWAPWSDAEFVTKLARKLIEDNLGQKVELVQTDV 67
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
++ + ID M W P EG ++ + +GAK V D
Sbjct: 68 APLYQGVSRGDIDAMMMAWLPETHADYYK-RIEGKVENLGPLYEGAKLGWIVPDYIPESE 126
Query: 125 IKSYQDIAKY--KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
I S +D+ K +++L +I GI+PG + + I ++L +SE A +
Sbjct: 127 ISSIEDLKKPEVREKLKGEIQGIDPGAGLTRLSQEAIKKYGLD---YKLNISSEAAMLTT 183
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ R R+ V SW PH + + Y+ + G G + V R + + P ++
Sbjct: 184 VDRANRSEGWFVATSWSPHWMFGKYKLRYIADPKGALG-GAEHIDAVARKGFKEDNPKVA 242
Query: 243 RLLKNIKFSVALENEMMKLI-LNNKQDRQFVGRTMLRTHPDLLKNWLI 289
L + NE+ + + + + HPD +K WL
Sbjct: 243 AFLAKMSIP---INELEAAMFDAQETSYEKAVDKYIADHPDRIKEWLS 287
>gi|229161661|ref|ZP_04289641.1| Glycine betaine-binding protein [Bacillus cereus R309803]
gi|228621906|gb|EEK78752.1| Glycine betaine-binding protein [Bacillus cereus R309803]
Length = 285
Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats.
Identities = 68/291 (23%), Positives = 124/291 (42%), Gaps = 12/291 (4%)
Query: 2 YKILAVCLFL---TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
KI +CL L F+ A +A+S ++ T W + AT M V+LE+ GYK
Sbjct: 3 KKIWLICLALFITMIFTSCNATNANSKGKIKLGVTSWKENIATANMWKVLLEQK-GYKVE 61
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ L + + +D + W P +K + ++ I L ++ +G L V
Sbjct: 62 LMYLEKAAIWTGVARGDVDANLEVWLPVTDKPLNDRYKD-DIVLKSKWYEGTGLGLVVPS 120
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
I S +D+ +K EL KI GIEPG+ + L +L+++SE A
Sbjct: 121 Y--MKNINSIEDLNAHKDELDKKIVGIEPGSSLMNLTNKAMKEYDIKL---KLVQSSEAA 175
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
S++++ P W PH S+ ++ YL +++ G + +Y +R +
Sbjct: 176 MMSELKKAYTKKKPIAVTLWNPHWGFSEFDLKYLKDPKKVYGEKD-DIYYSLRKGFETDH 234
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
P + + K + +M +LN +D + R ++ + L+ W+
Sbjct: 235 PEVVKYFDRWKMNDEQLGTLMI-MLNKTKDPEEAARKWIKKNQSLVDEWIK 284
>gi|229060462|ref|ZP_04197825.1| Glycine betaine-binding protein [Bacillus cereus AH603]
gi|228718845|gb|EEL70466.1| Glycine betaine-binding protein [Bacillus cereus AH603]
Length = 285
Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats.
Identities = 69/293 (23%), Positives = 126/293 (43%), Gaps = 13/293 (4%)
Query: 1 MYK---ILAVCLFLTTFSISY-ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
M K I+++ LF++ S A +A+S ++ T W + AT M V+LEE GYK
Sbjct: 1 MRKKIWIISLLLFISMIFTSCNATNANSKGKIKLGVTSWKENIATANMWKVLLEEK-GYK 59
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ L + + +D + W P +K + + L ++ +G L V
Sbjct: 60 VELMYLEKAAIWTGVARGDVDANLEVWLPVTDKPL-NARYKDDFVLKSKWYEGTGLGLVV 118
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ S +D+ +K EL KI GIEPG+ + L +L+++SE
Sbjct: 119 PSYV--KNVNSIEDLNAHKDELDNKIVGIEPGSSLMNLTNKAMKAYDIKL---KLVQSSE 173
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
A S++++ P W PH S+ ++ YL +++ G + +Y VR +
Sbjct: 174 AAMMSELKKAYTKKKPIAVTLWNPHWGFSEFDLKYLKDPKKVYGEKD-DIYYSVRKGFEK 232
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
P+I + K + +M +LN +D + R ++ + L+ W+
Sbjct: 233 DHPDIVKYFDQWKMNDEQLGTLMV-MLNKTKDPEEAARKWIKKNQLLVDEWVK 284
>gi|94269122|ref|ZP_01291375.1| Substrate-binding region of ABC-type glycine betaine transport
system [delta proteobacterium MLMS-1]
gi|93451337|gb|EAT02209.1| Substrate-binding region of ABC-type glycine betaine transport
system [delta proteobacterium MLMS-1]
Length = 301
Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats.
Identities = 58/292 (19%), Positives = 111/292 (38%), Gaps = 8/292 (2%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+ K L + + + A P++ T W+D T +T +LE +GY+ +
Sbjct: 13 LKKSLTAAVIGGFMAATVAVAPAQADPIKIGWTAWSDAEFVTKLTQRVLENEMGYEVKLI 72
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ ++ L + ID+ + W P+ + L + I + A+ AV D
Sbjct: 73 QTDIAPQYQGLASGDIDMMLMAWLPNTHEDYMAKLGD-RIVNLGPLYGYARLGWAVPDHI 131
Query: 121 FALGIKSYQDIAK--YKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
A + S +D+ K + +L +I GI+PG + I N G+ L +S
Sbjct: 132 PASELNSIEDLKKSSVRNKLNGRITGIDPGAGLTRLSQSTIENYGLD--GYDLQISSGAG 189
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
S + R R + V W PH + YL S G ++ + R + ++
Sbjct: 190 MTSALERAIRRDEWIVVTGWSPHWKFGAYELRYLEDPRG-SLGGLERIHALTRQGFPEEH 248
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIG 290
++ ++ I + + E M N + + +P + W+ G
Sbjct: 249 VEVAMMVTRIYLDLEVLEEAMFYAQEN--SYEEAVSRFINDYPQYIDYWVSG 298
>gi|311696187|gb|ADP99060.1| glycine betaine/proline ABC transporter, periplasmic glycine
betaine/proline-binding protein [marine bacterium HP15]
Length = 321
Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats.
Identities = 46/311 (14%), Positives = 93/311 (29%), Gaps = 24/311 (7%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K+ + L A+ +C V + W T + + I+E+ G I
Sbjct: 1 MRKLKSAALLCALSVPVAAQ--ANCGEVSITEMNWASNTVVTNVATFIMEQGYGCDVTIV 58
Query: 61 LLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQ-GAKYMLAVND 118
P +N DI W S + E+G ++ + + L G +
Sbjct: 59 PSDTVPAVTSVAENGEPDIVTELWLNSAGEAYLRLEEQGKVERLGKVLDPGGVEGWWIPT 118
Query: 119 VGFA--LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG-FRLIEAS 175
+K+ + I + +G G +++ G S
Sbjct: 119 YLAEEHPELKTIEGIMANPELVGGTFNNCPDGWGCRVVSDNLVRALDLEESGIDVFNHGS 178
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIH-----------------YLPGGEEI 218
S + +N P W P ++ +
Sbjct: 179 GETLASSMASAVQNKEPWFGYYWGPTVPLGKYDMTRVDLGDIKPDVHQKNQTPDVDNPGV 238
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLR 278
S F A+V T + + + ++ P ++ +L + F + ++ + +N + L
Sbjct: 239 SDFPAATVLTSITTSFKEREPEVAEMLSKLTFKTETMSSILAWMDSNNASGEEAAVYYLS 298
Query: 279 THPDLLKNWLI 289
+ D WL
Sbjct: 299 NNSDEWSTWLN 309
>gi|225629215|ref|ZP_03787248.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
gi|261220563|ref|ZP_05934844.1| conserved hypothetical protein [Brucella ceti B1/94]
gi|261753692|ref|ZP_05997401.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
gi|225615711|gb|EEH12760.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
gi|260919147|gb|EEX85800.1| conserved hypothetical protein [Brucella ceti B1/94]
gi|261743445|gb|EEY31371.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
Length = 307
Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats.
Identities = 61/288 (21%), Positives = 109/288 (37%), Gaps = 11/288 (3%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
+ + A A V+ W+D T + ++E+ LG K + V
Sbjct: 27 FGLAAVVAGTMTMGAAFAQDGKTVKIGWAPWSDAEFVTKLARKLIEDNLGQKVELVQTDV 86
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
++ + ID M W P + EG ++ + +GAK V D
Sbjct: 87 APLYQGVSRGDIDAMMMAWLPETHADYYKRV-EGKVENLGPLYEGAKLGWIVPDYIPESE 145
Query: 125 IKSYQDIAKY--KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
I S +D+ K +++L +I GI+PG + + I ++L +SE A +
Sbjct: 146 ISSIEDLKKPEVREKLKGEIQGIDPGAGLTRLSQEAIKKYGLD---YKLNISSEAAMLTT 202
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ R R+ V SW PH + + Y+ + G G + V R + + P ++
Sbjct: 203 VDRANRSEGWFVATSWSPHWMFGKYKLRYIADPKGALG-GAEHIDAVARKGFKEDNPKVA 261
Query: 243 RLLKNIKFSVALENEMMKLI-LNNKQDRQFVGRTMLRTHPDLLKNWLI 289
LL + NE+ + + + + HPD +K WL
Sbjct: 262 ALLAKMSIP---INELEAAMFDAQETSYEKAVDKYIADHPDRIKEWLS 306
>gi|149188567|ref|ZP_01866859.1| hypothetical ABC transporter, substrate binding protein [Vibrio
shilonii AK1]
gi|148837477|gb|EDL54422.1| hypothetical ABC transporter, substrate binding protein [Vibrio
shilonii AK1]
Length = 336
Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats.
Identities = 50/342 (14%), Positives = 103/342 (30%), Gaps = 40/342 (11%)
Query: 1 MYKILAVCLFLTTFSISY--ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M + LF + + S A+ C V AD W + ILE
Sbjct: 1 MKHLTRTLLFSSLLATSSLQTASANECGTVTIADMNWNSATLIANIDKFILEHGFDCDAE 60
Query: 59 IKLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAV 116
+ T + DI +W S+ + + ++EG I+ L G + V
Sbjct: 61 LVPGDTMPTGASMISKGQPDIAPEFWSNSMREALDLGVKEGQIQYAGTTLTDGGEEGFWV 120
Query: 117 NDVGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
+ + + + + + Y G ++ N
Sbjct: 121 PEYMVKQDPTLATIEGVLANAKKFTHPEDPSKSAFYTCPAGWNCQISAGNLFNALGMEQA 180
Query: 168 GFRLI-EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS------- 219
GF L+ S I + W P + + + G +
Sbjct: 181 GFELVDPGSGAGLSGSIAKAYEREEAWFGYYWAPTAVLGKYKMVKVDFGSGVDETMFKDC 240
Query: 220 ------------GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQ 267
+ ++V TVV + K P K +F+ A N ++ + + +
Sbjct: 241 ITQEECLDPKPTMYPPSAVETVVTDSFAKKSPEAMAYFKQREFTNAQMNGLLAWMEDEQA 300
Query: 268 DRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMNN 309
D ++ ++ + D WL D + ++++ +++
Sbjct: 301 DGEYAVEHFMKEYKDTWAAWLS-------PDVAAKVQKAVDS 335
>gi|306845958|ref|ZP_07478525.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein, hypothetical [Brucella sp. BO1]
gi|306273593|gb|EFM55438.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein, hypothetical [Brucella sp. BO1]
Length = 288
Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats.
Identities = 61/288 (21%), Positives = 109/288 (37%), Gaps = 11/288 (3%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
+ + A A V+ W+D T + ++E+ LG K + V
Sbjct: 8 FGLAAVVAGTMTMGAAFAQDGKTVKIGWAPWSDAEFVTKLVRKLIEDNLGQKVELVQTDV 67
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
++ + ID M W P + EG ++ + +GAK V D
Sbjct: 68 APLYQGVSRGDIDAMMMAWLPETHADYYKRV-EGKVENLGPLYEGAKLGWIVPDYIPESE 126
Query: 125 IKSYQDIAKY--KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
I S +D+ K +++L +I GI+PG + + I ++L +SE A +
Sbjct: 127 ISSIEDLKKPEVREKLKGEIQGIDPGAGLTRLSQEAIKKYGLD---YKLNISSEAAMLTT 183
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ R R+ V SW PH + + Y+ + G G + V R + + P ++
Sbjct: 184 VDRANRSEGWFVATSWSPHWMFGKYKLRYIADPKGALG-GAEHIDAVARKGFKEDNPKVA 242
Query: 243 RLLKNIKFSVALENEMMKLI-LNNKQDRQFVGRTMLRTHPDLLKNWLI 289
LL + NE+ + + + + HPD +K WL
Sbjct: 243 ALLAKMSIP---INELEAAMFDAQETSYEKAVDKYIADHPDRIKEWLS 287
>gi|220904096|ref|YP_002479408.1| glycine betaine ABC transporter substrate-binding protein
[Desulfovibrio desulfuricans subsp. desulfuricans str.
ATCC 27774]
gi|219868395|gb|ACL48730.1| Substrate-binding region of ABC-type glycine betaine transport
system [Desulfovibrio desulfuricans subsp. desulfuricans
str. ATCC 27774]
Length = 287
Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats.
Identities = 64/287 (22%), Positives = 117/287 (40%), Gaps = 8/287 (2%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
LAV L + A+D ++ W A++ + +LE+ LGYK + +
Sbjct: 7 TLAVAFALLLSAGVMAKDKKEDKNLQLVYVEWDCANASSHLAKAVLEDKLGYKVELLPVT 66
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
P+ + SL D + W P K + + + +++++ + GA+ LAV D
Sbjct: 67 QPILWTSLATGDADAMVTAWLPDTHKDMHNKV-KNNVEVLGKLTGGARLGLAVPDYV--- 122
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
+KS +++ + ++I GI+PG Q ++ + L+E S+ S +
Sbjct: 123 TLKSVEELKANAGKFKSRIVGIDPGAGVMQLTEKLMKDYGID--NMELMEGSDTIMTSSL 180
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
RN V +W PH + ++HYL + S E +Y V R D P
Sbjct: 181 SDAIRNKEWIVVTAWSPHWMFGRWDMHYLEDPKG-SLGSEEGIYNVARKGLKDDHPAAHA 239
Query: 244 LLKNIKFSV-ALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
L ++ ++M D R ++ HP+L++ WL
Sbjct: 240 FLSKFAYANPEQLQQLMAWNQEKGADPMKNARRFMKEHPELVEAWLA 286
>gi|60682639|ref|YP_212783.1| putative exported glycine betaine-binding protein [Bacteroides
fragilis NCTC 9343]
gi|60494073|emb|CAH08865.1| putative exported glycine betaine-binding protein [Bacteroides
fragilis NCTC 9343]
gi|301164116|emb|CBW23672.1| putative exported glycine betaine-binding protein [Bacteroides
fragilis 638R]
Length = 284
Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats.
Identities = 65/289 (22%), Positives = 120/289 (41%), Gaps = 9/289 (3%)
Query: 1 MYKILAVCLFLTTFSISYARDADS-CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M K + L + A + DS + A W + A + + V+LEE GY+ +
Sbjct: 1 MRKYRIIGSLLLLAVMCVACNPDSGKKKISIAYANWLEGIAMSHLAKVVLEEK-GYEVEL 59
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
V F S+ K D+FM W P K + I+ + E A+ L V
Sbjct: 60 LNADVAPVFASVSRKKADVFMDAWLPVTMKDYIDQYGD-QIEFIGEVYDSARVGLVVPQY 118
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
I S ++A YK + ++I GI+ G + I + G++L+ +S
Sbjct: 119 V---TIDSIGELAAYKGQFSSEIVGIDAGAGIMKTTDKAIGDYGLD--GYKLLTSSSSTM 173
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+ +++ V W PH + + +L + G E+ +Y V + +K P
Sbjct: 174 LASLQKAMEKEAWIVITGWTPHWMFDRYPLKFLHDPKGTYGNVES-IYVVGWKGFTEKDP 232
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
++ NIKF+ + +MK + + + D + + R H +L+++W+
Sbjct: 233 FAAKFFSNIKFTTEEISSLMKALKDARMDEEDLVRKWRDEHRELVESWI 281
>gi|261750434|ref|ZP_05994143.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
gi|261740187|gb|EEY28113.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
Length = 307
Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats.
Identities = 60/288 (20%), Positives = 109/288 (37%), Gaps = 11/288 (3%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
+ + A A V+ W+D T + ++E+ LG K + V
Sbjct: 27 FGLAAVVAGTMTMGAAFAQDGKTVKIGWAPWSDAEFVTKLAKKLIEDNLGQKVELVQTDV 86
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
++ + ID M W P + EG ++ + +GAK V +
Sbjct: 87 APLYQGVSRGNIDAMMMAWLPETHADYYKRV-EGKVENLGPLYEGAKLGWIVPNYIPESE 145
Query: 125 IKSYQDIAKY--KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
I S +D+ K +++L +I GI+PG + + I ++L +SE A +
Sbjct: 146 ISSIEDLKKPEVREKLKGEIQGIDPGAGLTRLSQEAIKKYGLD---YKLNISSEAAMLTT 202
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ R R+ V SW PH + + Y+ + G G + V R + + P ++
Sbjct: 203 VDRANRSEGWFVATSWSPHWMFGKYKLRYIADPKGALG-GAEHIDAVARKGFKEDNPKVA 261
Query: 243 RLLKNIKFSVALENEMMKLI-LNNKQDRQFVGRTMLRTHPDLLKNWLI 289
LL + NE+ + + + + HPD +K WL
Sbjct: 262 ALLAKMSIP---INELEAAMFDAQETSYEKAVDKYIADHPDRIKEWLS 306
>gi|186472154|ref|YP_001859496.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia phymatum STM815]
gi|184194486|gb|ACC72450.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia phymatum STM815]
Length = 287
Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats.
Identities = 58/293 (19%), Positives = 117/293 (39%), Gaps = 10/293 (3%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADT-GWTDIAATTAMTSVILEEILGYKTNI 59
+ K++ + T + AD+ ++ GW D AT+ + + I+E+ LGY +
Sbjct: 4 LKKLMLCGALIATMTAIGTAAADTKPTIKIGYVEGWDDSVATSNVAAQIIEKRLGYPVQL 63
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+A + ++ + +D + W P +G ++ + N AK L V
Sbjct: 64 VPVAAGIMWQGVARGDLDATLSAWLPVTHGAYWD-QFKGKVQDLGANYTDAKIGLIVPAD 122
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
KS D+ +K + +I GI+ G ++ + I ++L+ +S A
Sbjct: 123 VPE---KSISDLQAHKADFSGRIVGIDAGAGVMKKTSEAIKAYNLD---YQLMPSSGSAM 176
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+++ R N P + W PH + + + +L +++ G E V +VV K P
Sbjct: 177 TAELARSMNANKPVIVTGWVPHWMFAKWKLKFLEDPKKVYGESE-HVDSVVNPGLDAKAP 235
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVT 292
+ LK ++ + +M N + + H D + +W+ G
Sbjct: 236 QVVAFLKKFQWKPGEIDSVMLA-TENGAKPADAAGSWIAAHGDRVNSWVGGAQ 287
>gi|228953122|ref|ZP_04115181.1| Glycine betaine-binding protein [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228806537|gb|EEM53097.1| Glycine betaine-binding protein [Bacillus thuringiensis serovar
kurstaki str. T03a001]
Length = 285
Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats.
Identities = 71/291 (24%), Positives = 124/291 (42%), Gaps = 12/291 (4%)
Query: 2 YKILAVCLFL---TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
KI +CL L F+ A +A+S ++ T W + AT M V+LEE GYK
Sbjct: 3 KKIWFICLALFITMIFTSCNATNANSKGKIKLGVTSWKENIATANMWKVLLEEK-GYKVE 61
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ L + + +D + W P +K + ++ I L ++ +G L V
Sbjct: 62 LMYLEKAAIWTGVARGDVDANLEVWLPVTDKPLNDRYKD-DIVLKSKWYEGTGLGLVVPS 120
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
I S +D+ +K EL KI GIEPG+ + L +L+++SE A
Sbjct: 121 Y--MKNINSIEDLNAHKDELENKIVGIEPGSSLMNLTNKAMKEYDIKL---KLVQSSEAA 175
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
S++++ P W PH S+ ++ YL +++ G + +Y VR +
Sbjct: 176 MMSELKKAYTKKKPIAVTLWNPHWGFSEFDLKYLKDPKKVYGEKD-DIYYSVRKGFEKDH 234
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
P+I + K + +M LN +D + R ++ + L+ W+
Sbjct: 235 PDIIKYFDKWKMNDEQLGTLMVE-LNKTKDPEEAARKWIKKNQALVNEWIK 284
>gi|23500475|ref|NP_699915.1| glycine betaine/L-proline ABC transporter periplasmic glycine
betaine-binding protein [Brucella suis 1330]
gi|161620797|ref|YP_001594683.1| substrate-binding region of ABC-type glycine betaine transport
system [Brucella canis ATCC 23365]
gi|163844869|ref|YP_001622524.1| hypothetical protein BSUIS_B0730 [Brucella suis ATCC 23445]
gi|254703077|ref|ZP_05164905.1| hypothetical protein Bsuib36_03897 [Brucella suis bv. 3 str. 686]
gi|254705780|ref|ZP_05167608.1| hypothetical protein BpinM_01915 [Brucella pinnipedialis
M163/99/10]
gi|254711011|ref|ZP_05172822.1| hypothetical protein BpinB_12267 [Brucella pinnipedialis B2/94]
gi|254720290|ref|ZP_05182101.1| hypothetical protein Bru83_12330 [Brucella sp. 83/13]
gi|256015502|ref|YP_003105511.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Brucella microti CCM 4915]
gi|256029393|ref|ZP_05443007.1| hypothetical protein BpinM2_01825 [Brucella pinnipedialis
M292/94/1]
gi|256059082|ref|ZP_05449291.1| hypothetical protein Bneo5_01815 [Brucella neotomae 5K33]
gi|256157586|ref|ZP_05455504.1| hypothetical protein BcetM4_01855 [Brucella ceti M490/95/1]
gi|256253439|ref|ZP_05458975.1| hypothetical protein BcetB_03902 [Brucella ceti B1/94]
gi|260167518|ref|ZP_05754329.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Brucella sp. F5/99]
gi|260567994|ref|ZP_05838463.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
gi|261313202|ref|ZP_05952399.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
gi|261318595|ref|ZP_05957792.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
gi|261323029|ref|ZP_05962226.1| conserved hypothetical protein [Brucella neotomae 5K33]
gi|261756934|ref|ZP_06000643.1| conserved hypothetical protein [Brucella sp. F5/99]
gi|265985308|ref|ZP_06098043.1| conserved hypothetical protein [Brucella sp. 83/13]
gi|265986396|ref|ZP_06098953.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
gi|265996090|ref|ZP_06108647.1| conserved hypothetical protein [Brucella ceti M490/95/1]
gi|294853484|ref|ZP_06794156.1| glycine betaine/proline transport system substrate-binding protein
[Brucella sp. NVSL 07-0026]
gi|306839825|ref|ZP_07472624.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein, hypothetical [Brucella sp. NF
2653]
gi|23464103|gb|AAN33920.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein, putative [Brucella suis 1330]
gi|161337608|gb|ABX63912.1| Substrate-binding region of ABC-type glycine betaine transport
system [Brucella canis ATCC 23365]
gi|163675592|gb|ABY39702.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
gi|255998162|gb|ACU49849.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Brucella microti CCM 4915]
gi|260154659|gb|EEW89740.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
gi|261297818|gb|EEY01315.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
gi|261299009|gb|EEY02506.1| conserved hypothetical protein [Brucella neotomae 5K33]
gi|261302228|gb|EEY05725.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
gi|261736918|gb|EEY24914.1| conserved hypothetical protein [Brucella sp. F5/99]
gi|262550387|gb|EEZ06548.1| conserved hypothetical protein [Brucella ceti M490/95/1]
gi|264658593|gb|EEZ28854.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
gi|264663900|gb|EEZ34161.1| conserved hypothetical protein [Brucella sp. 83/13]
gi|294819139|gb|EFG36139.1| glycine betaine/proline transport system substrate-binding protein
[Brucella sp. NVSL 07-0026]
gi|306405101|gb|EFM61381.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein, hypothetical [Brucella sp. NF
2653]
Length = 288
Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats.
Identities = 61/288 (21%), Positives = 109/288 (37%), Gaps = 11/288 (3%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
+ + A A V+ W+D T + ++E+ LG K + V
Sbjct: 8 FGLAAVVAGTMTMGAAFAQDGKTVKIGWAPWSDAEFVTKLARKLIEDNLGQKVELVQTDV 67
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
++ + ID M W P + EG ++ + +GAK V D
Sbjct: 68 APLYQGVSRGDIDAMMMAWLPETHADYYKRV-EGKVENLGPLYEGAKLGWIVPDYIPESE 126
Query: 125 IKSYQDIAKY--KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
I S +D+ K +++L +I GI+PG + + I ++L +SE A +
Sbjct: 127 ISSIEDLKKPEVREKLKGEIQGIDPGAGLTRLSQEAIKKYGLD---YKLNISSEAAMLTT 183
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ R R+ V SW PH + + Y+ + G G + V R + + P ++
Sbjct: 184 VDRANRSEGWFVATSWSPHWMFGKYKLRYIADPKGALG-GAEHIDAVARKGFKEDNPKVA 242
Query: 243 RLLKNIKFSVALENEMMKLI-LNNKQDRQFVGRTMLRTHPDLLKNWLI 289
LL + NE+ + + + + HPD +K WL
Sbjct: 243 ALLAKMSIP---INELEAAMFDAQETSYEKAVDKYIADHPDRIKEWLS 287
>gi|169827314|ref|YP_001697472.1| glycine betaine-binding protein [Lysinibacillus sphaericus C3-41]
gi|168991802|gb|ACA39342.1| Glycine betaine-binding protein precursor [Lysinibacillus
sphaericus C3-41]
Length = 292
Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats.
Identities = 58/290 (20%), Positives = 110/290 (37%), Gaps = 13/290 (4%)
Query: 5 LAVCLFLTTFSI--SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL 62
L + L S S + V A W A+T + +LE+ LGY + L
Sbjct: 13 LGLGFMLAACSGEDSGSGKNSDSKEVNLAYVEWDTEIASTNVVGQVLED-LGYDVTLTPL 71
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
+ + ++ D + W P + ++ + + ENL GAK L V A
Sbjct: 72 DNAIMWEAVSKGEADGMVAAWLPHTHESQYEKYKD-KLDELGENLAGAKIGLVVPSYMKA 130
Query: 123 LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
I+ E I GIEPG +N +L + + +S A +
Sbjct: 131 NSIE------DLTDEADRTITGIEPGAGITAATEKALNEYD-NLADWNFVTSSSGAMTTS 183
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ + ++ + W PH + ++ YL + + G GE ++ T VR + P +
Sbjct: 184 LAKALKDKEEIIVTGWSPHWKFAKYDLKYLEDPKGVYG-GEETINTFVRKGLKEDLPEVY 242
Query: 243 RLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVT 292
+L N ++ +M ++ + +D + + + +P+ + W V
Sbjct: 243 SVLDNFHWTAEDLESVMLEVM-DGKDPKDAAKEWIEANPEKVAEWTKDVK 291
>gi|228921457|ref|ZP_04084780.1| Glycine betaine-binding protein [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228838230|gb|EEM83548.1| Glycine betaine-binding protein [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 285
Score = 186 bits (472), Expect = 4e-45, Method: Composition-based stats.
Identities = 71/291 (24%), Positives = 124/291 (42%), Gaps = 12/291 (4%)
Query: 2 YKILAVCLFL---TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
KI +CL L F+ A +A+S ++ T W + AT M V+LEE GYK
Sbjct: 3 KKIWFICLALFITMIFTSCNATNANSKGKIKLGVTSWKENIATANMWKVLLEEK-GYKVE 61
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ L + + +D + W P +K + ++ I L ++ +G L V
Sbjct: 62 LMYLEKAAIWTGVARGDVDANLEVWLPVTDKPLNDRYKD-DIVLKSKWYEGTGLGLVVPS 120
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
I S +D+ +K EL KI GIEPG+ + L +L+++SE A
Sbjct: 121 Y--MKNINSIEDLNAHKGELDNKIVGIEPGSSLMNLTNKAMKEYDIKL---KLVQSSEAA 175
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
S++++ P W PH S+ ++ YL +++ G + +Y VR +
Sbjct: 176 MMSELKKAYTKKKPIAVTLWNPHWGFSEFDLKYLKDPKKVYGEKD-DIYYSVRKGFEKDH 234
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
P+I + K + +M LN +D + R ++ + L+ W+
Sbjct: 235 PDIIKCFDKWKMNDEQLGTLMVE-LNKTKDPEEAARKWIKKNQALVDEWVK 284
>gi|265990035|ref|ZP_06102592.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|263000704|gb|EEZ13394.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
Rev.1]
Length = 307
Score = 186 bits (472), Expect = 4e-45, Method: Composition-based stats.
Identities = 60/288 (20%), Positives = 109/288 (37%), Gaps = 11/288 (3%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
+ + A A V+ W+D T + ++E+ LG K + V
Sbjct: 27 FGLAAVVAGTMTMGAAFAQDGKTVKIGWAPWSDAEFVTKLARKLIEDNLGQKVELVQTDV 86
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
++ + ID M W P + EG ++ + +GAK V D
Sbjct: 87 APLYQGVSRGDIDAMMMAWLPETHADYYKRV-EGKVENLGPLYEGAKLGWIVPDYIPESE 145
Query: 125 IKSYQDIAKY--KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ S +D+ K +++L +I GI+PG + + I ++L +SE A +
Sbjct: 146 VSSIEDLKKPEVREKLKGEIQGIDPGAGLTRLSQEAIKKYGLD---YKLNISSEAAMLTT 202
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ R R+ V SW PH + + Y+ + G G + V R + + P ++
Sbjct: 203 VDRANRSEGWFVATSWSPHWMFGKYKLRYIADPKGALG-GAEHIDAVARKGFKEDNPKVA 261
Query: 243 RLLKNIKFSVALENEMMKLI-LNNKQDRQFVGRTMLRTHPDLLKNWLI 289
LL + NE+ + + + + HPD +K WL
Sbjct: 262 ALLAKMSIP---INELEAAMFDAQETSYEKAVDKYIADHPDRIKEWLS 306
>gi|150005779|ref|YP_001300523.1| glycine betaine-binding protein precursor [Bacteroides vulgatus
ATCC 8482]
gi|149934203|gb|ABR40901.1| glycine betaine-binding protein precursor [Bacteroides vulgatus
ATCC 8482]
Length = 280
Score = 186 bits (472), Expect = 4e-45, Method: Composition-based stats.
Identities = 56/288 (19%), Positives = 120/288 (41%), Gaps = 11/288 (3%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M KIL ++ + W D A T +T VILE+ GY +K
Sbjct: 1 MKKILYFL--SFLLLLASCSGKKDDKTISIGYINWDDGIALTYLTEVILEQQ-GYHVVLK 57
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ ++ +D+ M W P+ + + +++++ + A+ L V D
Sbjct: 58 NADPAPIYATMARGKVDLLMDAWLPATQADYMKQYGK-NLEILGKIYPDARIGLVVPDYV 116
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
I S + + K++ G +I GI+ G I ++L+E+S A
Sbjct: 117 ---DIHSIEQLNANKEKFGGEIIGIDAGAGIMHATDMAIEKYNLD---YKLLESSGPAMT 170
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ ++R + V W PH + + + +L + I G E ++ + R + ++ P
Sbjct: 171 AVLKRAVDEHQWIVVTGWTPHWMFTRFKLKFLEDPKGIFGKAE-TITAIARKGFGEQHPF 229
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+++L++NI S + ++ + N+ + + ++ H +L+ +W+
Sbjct: 230 VAKLIENIHLSTEEISSLLDDVSQNEYNEKEGAEKWVKEHQELVDSWI 277
>gi|125623880|ref|YP_001032363.1| glycine betaine-binding periplasmic protein precursor [Lactococcus
lactis subsp. cremoris MG1363]
gi|6119854|gb|AAF04259.1|AF139575_2 glycine-betaine binding permease protein [Lactococcus lactis]
gi|7212814|gb|AAF40474.1|AF184955_2 OpuABC [Lactococcus lactis subsp. cremoris MG1363]
gi|124492688|emb|CAL97642.1| glycine betaine-binding periplasmic protein precursor [Lactococcus
lactis subsp. cremoris MG1363]
gi|300070654|gb|ADJ60054.1| glycine betaine-binding periplasmic protein precursor [Lactococcus
lactis subsp. cremoris NZ9000]
Length = 573
Score = 186 bits (472), Expect = 4e-45, Method: Composition-based stats.
Identities = 55/284 (19%), Positives = 105/284 (36%), Gaps = 11/284 (3%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP 65
+ L + FS S V W A+ + + +EE + L
Sbjct: 301 LLALIVGAFSGMSFGKKSSDKKVDLVYMNWDSEVASINVLTQAMEEHS-FDVTTTALDNA 359
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
V ++++ N D + W P+ K + ++L+ NL+GAK V
Sbjct: 360 VAWQTVANSQADGMVSAWLPNTHKTQWKKYGKS-VELLGPNLKGAKVGFVVPSYM----- 413
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
+ I + I GIEPG + + + +LK ++L+ +S A +
Sbjct: 414 -NVNSIEDLTNQANKTITGIEPGAGVMAASENTLKSYS-NLKDWKLVPSSSGAMTVALGE 471
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
+ + V W PH I + ++ YL + G E ++ T+VR + P ++L
Sbjct: 472 AIKQHKDIVITGWSPHWIFNKYDLKYLADPKGTMGTSE-NINTIVRKGLKKENPEAYKVL 530
Query: 246 KNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
N ++ +M I N + + + ++ H + W
Sbjct: 531 NNFNWTTKDMESVMLDI-QNGKTPEAAAKAWIKDHQKQVDKWFK 573
>gi|90577308|ref|ZP_01233119.1| hypothetical ABC transporter, substrate binding protein [Vibrio
angustum S14]
gi|90440394|gb|EAS65574.1| hypothetical ABC transporter, substrate binding protein [Vibrio
angustum S14]
Length = 333
Score = 186 bits (471), Expect = 4e-45, Method: Composition-based stats.
Identities = 58/340 (17%), Positives = 109/340 (32%), Gaps = 39/340 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K+LA + L+ S + A C V AD W + S IL+ G +T++
Sbjct: 1 MRKLLAATVLLSAMSATQV-HASECGKVTIADMNWNSATLLANVDSFILQHGYGCETDLV 59
Query: 61 LLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVND 118
T ++ DI +W S++ + +EEG I + G + V +
Sbjct: 60 PGDTMPTGTSMVEKGEPDIAPEFWSNSMKAALDRGVEEGRILYAGTSFSDGGEEGFWVPE 119
Query: 119 VG--FALGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNNKFSLKGF 169
+ + + I K K Y G ++ K GF
Sbjct: 120 YMVKKDPSLATIEGIKKNAKLFTHPEDPEKSAFYNCPAGWNCQISAGNLFEALKLEDAGF 179
Query: 170 RLI-EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNI------------------- 209
LI S I + W P + +
Sbjct: 180 DLIDPGSGAGLSGSIAKAYERGEAWFGYYWAPTAVLGKYKMVKVDFGSGVDAKYFKECLT 239
Query: 210 HYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDR 269
+ S + + V TV+ + + + P + L F+ A N ++ + +N+ D
Sbjct: 240 KPECVDPKASMYPPSEVDTVITTSFAKRAPEAVKYLGQRSFTNAQMNSLLAWMEDNQADG 299
Query: 270 QFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMNN 309
+ V +L H D+ W+ + + ++ + +
Sbjct: 300 ETVMEEILTNHEDIWVKWVS-------PEVADKVRGALAD 332
>gi|254699955|ref|ZP_05161783.1| hypothetical protein Bsuib55_03717 [Brucella suis bv. 5 str. 513]
Length = 288
Score = 186 bits (471), Expect = 4e-45, Method: Composition-based stats.
Identities = 60/288 (20%), Positives = 109/288 (37%), Gaps = 11/288 (3%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
+ + A A V+ W+D T + ++E+ LG K + V
Sbjct: 8 FGLAAVVAGTMTMGAAFAQDGKTVKIGWAPWSDAEFVTKLAKKLIEDNLGQKVELVQTDV 67
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
++ + ID M W P + EG ++ + +GAK V +
Sbjct: 68 APLYQGVSRGNIDAMMMAWLPETHADYYKRV-EGKVENLGPLYEGAKLGWIVPNYIPESE 126
Query: 125 IKSYQDIAKY--KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
I S +D+ K +++L +I GI+PG + + I ++L +SE A +
Sbjct: 127 ISSIEDLKKPEVREKLKGEIQGIDPGAGLTRLSQEAIKKYGLD---YKLNISSEAAMLTT 183
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ R R+ V SW PH + + Y+ + G G + V R + + P ++
Sbjct: 184 VDRANRSEGWFVATSWSPHWMFGKYKLRYIADPKGALG-GAEHIDAVARKGFKEDNPKVA 242
Query: 243 RLLKNIKFSVALENEMMKLI-LNNKQDRQFVGRTMLRTHPDLLKNWLI 289
LL + NE+ + + + + HPD +K WL
Sbjct: 243 ALLAKMSIP---INELEAAMFDAQETSYEKAVDKYIADHPDRIKEWLS 287
>gi|307545345|ref|YP_003897824.1| ABC transporter periplasmic protein [Halomonas elongata DSM 2581]
gi|307217369|emb|CBV42639.1| ABC-type transport system periplasmic substrate-binding protein
[Halomonas elongata DSM 2581]
Length = 312
Score = 186 bits (471), Expect = 5e-45, Method: Composition-based stats.
Identities = 78/306 (25%), Positives = 139/306 (45%), Gaps = 4/306 (1%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
+L L LT+ + A+ VRF W + + + + +LE +GY+T + LA
Sbjct: 10 LLGATLALTSLAAPLAQ--ADLEEVRFGVPPWPGVTVKSEVAAQLLEA-MGYETRQEELA 66
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
V V + +D ++G WYP + P + +G ++ N+QGA L V +
Sbjct: 67 VSVILNGVAEGDLDAYLGGWYPVQTDMVEPLVADGKVEKAVANIQGAVSGLVVPRYVYEA 126
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
G++S D+ Y++ A I GIE G N + I+ N L ++L E+S A +Q
Sbjct: 127 GVESVADLNAYRERFDATILGIEAGTGINTALNAAIDENLADLGDWKLRESSTAAMLAQA 186
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG-EASVYTVVRSDYLDKCPNIS 242
+ R+ F+ WEPH +N ++ YL ++ E++V+TVV SD ++ ++
Sbjct: 187 EQKMRDGQWVTFVGWEPHWMNVSFDLVYLEDADDAGVAQIESTVWTVVPSDLKERDGDVH 246
Query: 243 RLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQ 302
R + A +N+ + ++ V + H D + WL GV DG+
Sbjct: 247 RFMTQYVVDTADQNDWVHAYSYEERPADEVASEWIPAHYDTVATWLEGVEARDGRPAIEA 306
Query: 303 LERFMN 308
++ +
Sbjct: 307 VKAHFD 312
>gi|253565125|ref|ZP_04842581.1| glycine betaine-binding protein [Bacteroides sp. 3_2_5]
gi|251946590|gb|EES86967.1| glycine betaine-binding protein [Bacteroides sp. 3_2_5]
Length = 284
Score = 186 bits (471), Expect = 5e-45, Method: Composition-based stats.
Identities = 63/289 (21%), Positives = 120/289 (41%), Gaps = 9/289 (3%)
Query: 1 MYKILAVCLFLTTFSISYARDADS-CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M K + L + A + DS + A W + A + + V+LEE GY+ +
Sbjct: 1 MRKYRIIGSLLLLAVMCVACNPDSGKKKISIAYANWLEGIAMSHLAKVVLEEK-GYEVEL 59
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
V F S+ + D+FM W P K + I+ + E A+ L V
Sbjct: 60 LNADVAPVFASVSREKADVFMDAWLPVTMKDYIDQYGD-QIEFIGEVYDSARVGLVVPQY 118
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
I S ++A YK + ++I GI+ G + I + G++L+ +S
Sbjct: 119 V---TIDSIGELAAYKGQFSSEIVGIDAGAGIMKTTDKAIGDYGLD--GYKLLTSSSSTM 173
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+ +++ V W PH + + +L + G E+ +Y + + +K P
Sbjct: 174 LASLQKAMEKEAWIVITGWTPHWMFDRYPLKFLHDPKGTYGNVES-IYVIGWKGFTEKDP 232
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
++ NIKF+ + +MK + + + D + + R H +L+++W+
Sbjct: 233 FAAKFFSNIKFTTEEISSLMKALKDARMDEEDLVRKWRDEHRELVESWI 281
>gi|209546967|ref|YP_002278885.1| glycine/betaine ABC transporter substrate-binding protein
[Rhizobium leguminosarum bv. trifolii WSM2304]
gi|209538211|gb|ACI58145.1| Substrate-binding region of ABC-type glycine betaine transport
system [Rhizobium leguminosarum bv. trifolii WSM2304]
Length = 333
Score = 186 bits (471), Expect = 5e-45, Method: Composition-based stats.
Identities = 52/340 (15%), Positives = 95/340 (27%), Gaps = 40/340 (11%)
Query: 1 MYKILAV-CLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M K+LA CL + A C V A W + + IL E G +I
Sbjct: 1 MKKLLASTCLTFGLIGGASFASAAECGSVTIASMNWQSAEVLSNLDKFILNEGYGCSADI 60
Query: 60 KLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAVN 117
+ P + DI W L + EEG I V G +
Sbjct: 61 TVGDTVPTITSMAEKGQPDIAPEAWIDLLPDVVKKGTEEGRIVQVGSPLPDGGVQGWWIP 120
Query: 118 DVGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
+K + + I G G + + G
Sbjct: 121 KYLADAHPDIKTIGDVLKHPELFPDPEDPKKGAIVNGPQGWGGTVVTSQLYKAFEAEKAG 180
Query: 169 FRLIE-ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIH----------------- 210
F L++ S I + W P + +
Sbjct: 181 FTLVDTGSAAGLDGSIAKAYERKEGWAGYYWAPTALLGKYQMVKLEAGVPEDSAEWKRCI 240
Query: 211 --YLPGGEEISGFGEASVYTVVRSDYLDK-CPNISRLLKNIKFSVALENEMMKLILNNKQ 267
+ + + V T+V + +K P + L +S N++M + +N+
Sbjct: 241 TVADCPDPKPASWPVDHVVTLVAKPFSEKVGPEVMDYLAKRSWSNDTVNKLMSWMTDNQA 300
Query: 268 DRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ + L+ + D+ W+ + + ++E +
Sbjct: 301 TGEDGAKHFLKENKDIWSKWVS-------PEAATKIEAAL 333
>gi|17988895|ref|NP_541528.1| glycine betaine/L-proline-binding protein PROX [Brucella melitensis
bv. 1 str. 16M]
gi|17984722|gb|AAL53792.1| glycine betaine/l-proline-binding protein prox [Brucella melitensis
bv. 1 str. 16M]
Length = 287
Score = 186 bits (471), Expect = 5e-45, Method: Composition-based stats.
Identities = 62/294 (21%), Positives = 112/294 (38%), Gaps = 13/294 (4%)
Query: 1 MYKI--LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K+ + + A A V+ W+D T + ++E+ LG K
Sbjct: 1 MGKLTRFGLAAVVAGTMTMGAAFAQDGKTVKIGWAPWSDAEFVTKLARKLIEDNLGQKVE 60
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ V ++ + ID M W P + EG ++ + +GAK V D
Sbjct: 61 LVQTDVAPLYQGVSRGDIDAMMMAWLPETHADYYKRV-EGKVENLGPLYEGAKLGWIVPD 119
Query: 119 VGFALGIKSYQDIAKY--KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ S +D+ K +++L +I GI+PG + + I ++L +SE
Sbjct: 120 YIPESEVSSIEDLKKPEVREKLKGEIQGIDPGAGLTRLSQEAIKKYGLD---YKLNISSE 176
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
A + + R R+ V SW PH + + Y+ + G G + V R + +
Sbjct: 177 AAMLTTVDRANRSEGWFVATSWSPHWMFGKYKLRYIADPKGALG-GAEHIDAVARKGFKE 235
Query: 237 KCPNISRLLKNIKFSVALENEMMKLI-LNNKQDRQFVGRTMLRTHPDLLKNWLI 289
P ++ LL + NE+ + + + + HPD +K WL
Sbjct: 236 DNPKVAALLAKMSIP---INELEAAMFDAQETSYEKAVDKYIADHPDRIKEWLS 286
>gi|307545352|ref|YP_003897831.1| ABC transporter periplasmic protein [Halomonas elongata DSM 2581]
gi|307217376|emb|CBV42646.1| ABC-type transport system periplasmic substrate-binding protein
[Halomonas elongata DSM 2581]
Length = 312
Score = 186 bits (471), Expect = 5e-45, Method: Composition-based stats.
Identities = 63/293 (21%), Positives = 129/293 (44%), Gaps = 5/293 (1%)
Query: 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDI 78
A AD +R W + + + + ++E LGY T+ + L+ V + +L+ D
Sbjct: 21 ATAADRDDELRLVVPPWPGVTVKSEIFAQLIE-PLGYTTSKQQLSSTVGYNTLQTGDSDA 79
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--K 136
F+ W P+ ++ ++ G+I + N+ GA+ AV + GI S + +A + +
Sbjct: 80 FLAGWMPAQQESYDAAMQAGAIVDLGNNVNGARMGFAVPSYVYEAGITSAEQLADPEVAE 139
Query: 137 ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFL 196
+Y IE G+ + I + + L ++ + +S S++ + +F
Sbjct: 140 RFDKTVYSIESGSTVTDMLNKAIEADTYGLGDWKAMSSSTPGMLSEVEAAVDEDRWILFY 199
Query: 197 SWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVAL 254
W PH + + + L E + G + V T+V Y + PN++RLL S
Sbjct: 200 GWTPHWMVPEYDTRILDDPEGVYGPDNGRSDVKTIVAKSYAEANPNLTRLLDQFVLSADE 259
Query: 255 ENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+++ ++ +++ + V L +HP+ + +L V T DG + +E +
Sbjct: 260 QSDFIREYSLEERELEAVAHDWLVSHPERIAEFLESVKTRDGGNALDAVEASL 312
>gi|225686508|ref|YP_002734480.1| Substrate-binding region of ABC-type glycine betaine transport
system [Brucella melitensis ATCC 23457]
gi|256043616|ref|ZP_05446543.1| Substrate-binding region of ABC-type glycine betaine transport
system [Brucella melitensis bv. 1 str. Rev.1]
gi|256262353|ref|ZP_05464885.1| conserved hypothetical protein [Brucella melitensis bv. 2 str.
63/9]
gi|260564807|ref|ZP_05835292.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
gi|225642613|gb|ACO02526.1| Substrate-binding region of ABC-type glycine betaine transport
system [Brucella melitensis ATCC 23457]
gi|260152450|gb|EEW87543.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
gi|263092083|gb|EEZ16380.1| conserved hypothetical protein [Brucella melitensis bv. 2 str.
63/9]
gi|326410890|gb|ADZ67954.1| Substrate-binding region of ABC-type glycine betaine transport
system [Brucella melitensis M28]
gi|326554181|gb|ADZ88820.1| Substrate-binding region of ABC-type glycine betaine transport
system [Brucella melitensis M5-90]
Length = 288
Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats.
Identities = 60/288 (20%), Positives = 109/288 (37%), Gaps = 11/288 (3%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
+ + A A V+ W+D T + ++E+ LG K + V
Sbjct: 8 FGLAAVVAGTMTMGAAFAQDGKTVKIGWAPWSDAEFVTKLARKLIEDNLGQKVELVQTDV 67
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
++ + ID M W P + EG ++ + +GAK V D
Sbjct: 68 APLYQGVSRGDIDAMMMAWLPETHADYYKRV-EGKVENLGPLYEGAKLGWIVPDYIPESE 126
Query: 125 IKSYQDIAKY--KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ S +D+ K +++L +I GI+PG + + I ++L +SE A +
Sbjct: 127 VSSIEDLKKPEVREKLKGEIQGIDPGAGLTRLSQEAIKKYGLD---YKLNISSEAAMLTT 183
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ R R+ V SW PH + + Y+ + G G + V R + + P ++
Sbjct: 184 VDRANRSEGWFVATSWSPHWMFGKYKLRYIADPKGALG-GAEHIDAVARKGFKEDNPKVA 242
Query: 243 RLLKNIKFSVALENEMMKLI-LNNKQDRQFVGRTMLRTHPDLLKNWLI 289
LL + NE+ + + + + HPD +K WL
Sbjct: 243 ALLAKMSIP---INELEAAMFDAQETSYEKAVDKYIADHPDRIKEWLS 287
>gi|265992854|ref|ZP_06105411.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
Ether]
gi|262763724|gb|EEZ09756.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
Ether]
Length = 307
Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats.
Identities = 60/288 (20%), Positives = 109/288 (37%), Gaps = 11/288 (3%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
+ + A A V+ W+D T + ++E+ LG K + V
Sbjct: 27 FGLAAVVAGTMTMGAAFAQDGKTVKIGWAPWSDAEFVTKLARKLIEDNLGQKVELVQTDV 86
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
++ + ID M W P + EG ++ + +GAK V D
Sbjct: 87 APLYQGVSRGDIDAMMIAWLPETHADYYKRV-EGKVENLGPLYEGAKLGWIVPDYIPESE 145
Query: 125 IKSYQDIAKY--KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ S +D+ K +++L +I GI+PG + + I ++L +SE A +
Sbjct: 146 VSSIEDLKKPEVREKLKGEIQGIDPGAGLTRLSQEAIKKYGLD---YKLNISSEAAMLTT 202
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ R R+ V SW PH + + Y+ + G G + V R + + P ++
Sbjct: 203 VDRANRSEGWFVATSWSPHWMFGKYKLRYIADPKGALG-GAEHIDAVARKGFKEDNPKVA 261
Query: 243 RLLKNIKFSVALENEMMKLI-LNNKQDRQFVGRTMLRTHPDLLKNWLI 289
LL + NE+ + + + + HPD +K WL
Sbjct: 262 ALLAKMSIP---INELEAAMFDAQETSYEKAVDKYIADHPDRIKEWLS 306
>gi|242278150|ref|YP_002990279.1| glycine/betaine ABC transporter substrate-binding protein
[Desulfovibrio salexigens DSM 2638]
gi|242121044|gb|ACS78740.1| Substrate-binding region of ABC-type glycine betaine transport
system [Desulfovibrio salexigens DSM 2638]
Length = 284
Score = 185 bits (470), Expect = 6e-45, Method: Composition-based stats.
Identities = 57/269 (21%), Positives = 105/269 (39%), Gaps = 8/269 (2%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMG 81
A V+ A W ATT + ++EE +GY+ I +A ++++ +D
Sbjct: 23 AGDKKKVKLAYVEWDCATATTNVLKAVIEERMGYECEIIPVAAAAMWQAVGTGDVDGLAT 82
Query: 82 YWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAK 141
W P + + + + + GAK AV + S D+ KY + K
Sbjct: 83 AWLPITHADYLKRV-KNKVVDLGPIVSGAKLGWAVPSYV---TVDSIADLNKYADKFDDK 138
Query: 142 IYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPH 201
I GI+PG + + I+ F L+E S + + +NN V +W PH
Sbjct: 139 IIGIDPGAGLMRLSEEAIDKYGLDK--FELMEGSGATMTAALSDAIKNNEWVVVTAWSPH 196
Query: 202 PINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEM-MK 260
+ ++ YL +++ G E ++ T+VR P + L + A + +M M
Sbjct: 197 WMFGRWDLKYLEDPKKVLGESE-TINTIVRKGLDKDMPEVYAFLDKFAWKDANQLQMVMA 255
Query: 261 LILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
D + ++ + + +WL
Sbjct: 256 WNQEKGADPYESAKRFIKENKAQVDSWLK 284
>gi|312883012|ref|ZP_07742743.1| hypothetical protein VIBC2010_06984 [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309369172|gb|EFP96693.1| hypothetical protein VIBC2010_06984 [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 329
Score = 185 bits (470), Expect = 6e-45, Method: Composition-based stats.
Identities = 50/338 (14%), Positives = 109/338 (32%), Gaps = 40/338 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M +A+ L L F+I A SC V AD W + IL+ G +
Sbjct: 1 MKPQMALVLSLVLFTI--QAQAASCGKVTIADMNWNSATLIANVDRFILKHGYGCDAELI 58
Query: 61 LLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVND 118
T ++ DI W SL+ + ++E ++ ++L G + V
Sbjct: 59 PGDTMPTGTSMIEKGQPDIAPELWSNSLKTALDKGVQEKRLRYAGKSLLDGGEEGFWVPA 118
Query: 119 V--GFALGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNNKFSLKGF 169
+ + + I K+ K Y G ++ + GF
Sbjct: 119 YLVKKYPDLATIEGIKKHAKLFEHPEDPEQSAFYTCPAGWNCQISAGNLFKAMHLNKSGF 178
Query: 170 RLI-EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--------- 219
++ S I + W P + ++ + G +
Sbjct: 179 TIVDPGSSAGLSGSIAKAYERGEAWFGYYWSPTAVLGKYDMVKVDFGSGVDEKEFVSCTT 238
Query: 220 ----------GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDR 269
+ + V+T+ ++ + P F+ N+++ + +N+ D
Sbjct: 239 QTDCEAPKPTMYPPSPVHTITTEEFAKRAPKAYEYFTKRGFTNNNMNQILAWMEDNQADG 298
Query: 270 QFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ L ++P + + W+ QD ++++++ +
Sbjct: 299 EEAMFYFLESYPKIWQAWVP-------QDVAKKVKQAL 329
>gi|206974080|ref|ZP_03234998.1| putative glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Bacillus cereus
H3081.97]
gi|206748236|gb|EDZ59625.1| putative glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Bacillus cereus
H3081.97]
Length = 285
Score = 185 bits (470), Expect = 6e-45, Method: Composition-based stats.
Identities = 70/291 (24%), Positives = 124/291 (42%), Gaps = 12/291 (4%)
Query: 2 YKILAVCLFL---TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
KI +CL L F+ A +A+S ++ T W + AT M V+LE+ GYK
Sbjct: 3 KKIWFICLALFITMIFTSCNATNANSKGKIKLGVTSWKENIATANMWKVLLEQK-GYKVE 61
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ L + + +D + W P +K + ++ I L ++ +G L V
Sbjct: 62 LMYLEKAAIWTGVARGDVDANLEVWLPVTDKPLNDRYKD-DIVLKSKWYEGTGLGLVVPS 120
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
I S +D+ +K EL KI GIEPG+ + L +L+++SE A
Sbjct: 121 Y--MKNINSIEDLNAHKDELDNKIVGIEPGSSLMNLTNKAMKEYDIKL---KLVQSSEAA 175
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
S++++ P W PH S+ ++ YL +++ G + +Y VR +
Sbjct: 176 MMSELKKAYTKKKPIAVTLWNPHWGFSEFDLKYLKDPKKVYGEKD-DIYYSVRKGFEKDH 234
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
P+I + K + +M LN +D + R ++ + L+ W+
Sbjct: 235 PDIIKYFDKWKMNDEQLGTLMVE-LNKTKDPEEAARKWIKKNQMLVDEWIK 284
>gi|239834173|ref|ZP_04682501.1| substrate-binding region of ABC-type glycine betaine transport
system [Ochrobactrum intermedium LMG 3301]
gi|239822236|gb|EEQ93805.1| substrate-binding region of ABC-type glycine betaine transport
system [Ochrobactrum intermedium LMG 3301]
Length = 288
Score = 185 bits (470), Expect = 6e-45, Method: Composition-based stats.
Identities = 60/287 (20%), Positives = 109/287 (37%), Gaps = 9/287 (3%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
+ + A A PV+ W+D T + ++E+ LG K + V
Sbjct: 8 FGLAAVVAGTMTMGAAFAQDSKPVKIGWAPWSDAEFVTKLAKKLIEDNLGQKVELVQTDV 67
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
++ + ID M W P EG ++ + +GAK V
Sbjct: 68 APLYQGVSRGDIDAMMMAWLPETHADYYK-RIEGKVENLGPLYEGAKLGWIVPAYIPESE 126
Query: 125 IKSYQDIAKY--KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
I S +D+ K +++L +I GI+PG + + I ++L +SE A +
Sbjct: 127 ISSIEDLKKPEVREKLKGEIQGIDPGAGLTRLSQEAIKKYGLD---YKLNISSEAAMLTT 183
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ R R++ V SW PH + + Y+ E G G + + R + ++ P ++
Sbjct: 184 VDRATRSDGWFVATSWSPHWMFGKYKLRYIADPEGALG-GAEHIDAIARKGFKEENPKVA 242
Query: 243 RLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
LL + ++ M + + + HPD +K WL
Sbjct: 243 SLLTKMSLPISELEAAMF--DAQETSYEKAVDKYIADHPDRIKEWLA 287
>gi|332800283|ref|YP_004461782.1| glycine betaine ABC transporter periplasmic protein
[Tepidanaerobacter sp. Re1]
gi|332698018|gb|AEE92475.1| ABC-type glycine betaine transport, periplasmic subunit
[Tepidanaerobacter sp. Re1]
Length = 339
Score = 185 bits (470), Expect = 6e-45, Method: Composition-based stats.
Identities = 72/341 (21%), Positives = 123/341 (36%), Gaps = 41/341 (12%)
Query: 1 MYKILAVCLFLTTFSISYARDA-------DSCTPVRFADTGWTDIAATTAMTSVILEEIL 53
+ K L + L + A A +S + FAD GW I A+ I+E
Sbjct: 6 IRKNLLITLIINFMVFMSACSAGSNDAESNSKEKLVFADAGWDSIRIHNAIAGFIVENGY 65
Query: 54 GYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
GYKT+ + P+T R L+ IDI+M W ++ + +E IK ++ N
Sbjct: 66 GYKTDSMTGSSPITIRGLRQGDIDIYMEVWTDNVREVYQAGIENDEIKELSINFDDNAQG 125
Query: 114 LAVNDVGFA-----------LGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRI 155
L V +KS +D+ KY + +IYG P ++ +
Sbjct: 126 LYVPTYVIKGDKEREIEPLASDLKSIKDLPKYWEVFKDPDEPTKGRIYGAPPNWAADEIL 185
Query: 156 LDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPG- 214
S+ A + I P V WEP I ++ L
Sbjct: 186 RTKFETYSLDENFTYFNPGSDTALNASIVAAVEKGEPWVGYYWEPTWIMGKYDMTLLEDK 245
Query: 215 --------GEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNK 266
F V V D DK P + LKN K S + N+++ + +N
Sbjct: 246 PFDPEEWENGYACEFPGVKVAVAVNKDVADKAPEVVEFLKNYKTSSEITNKLLAYMQDNN 305
Query: 267 QDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ + + L+ + DL +W+ +D +++++ +
Sbjct: 306 AEAEDAAKWFLKEYEDLWADWVP-------EDIAQKVKNAL 339
>gi|153011207|ref|YP_001372421.1| substrate-binding region of ABC-type glycine betaine transport
system [Ochrobactrum anthropi ATCC 49188]
gi|151563095|gb|ABS16592.1| Substrate-binding region of ABC-type glycine betaine transport
system [Ochrobactrum anthropi ATCC 49188]
Length = 288
Score = 185 bits (469), Expect = 7e-45, Method: Composition-based stats.
Identities = 58/287 (20%), Positives = 107/287 (37%), Gaps = 9/287 (3%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
+ + A A PV+ W+D T + ++E+ LG K + V
Sbjct: 8 FGLAAVVAGTMTMGAAFAQDGKPVKIGWAPWSDAEFVTKLAKKLIEDNLGQKVELVQTDV 67
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
++ + ID M W P + ++ + +GAK V
Sbjct: 68 APLYQGVSRGDIDAMMMAWLPETHADYY-ARVKDKVEDLGPLYEGAKLGWIVPAYIPESE 126
Query: 125 IKSYQDIAKY--KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
I S +D+ K +++L +I GI+PG + + I ++L +SE A +
Sbjct: 127 ISSIEDLKKPEVREKLKGEIQGIDPGAGLTRLSQEAIKKYGLD---YKLNISSEAAMLTT 183
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ R R++ V SW PH + + Y+ E G G + + R + + P ++
Sbjct: 184 VDRATRSDGWFVATSWSPHWMFGKYKLRYIADPEGALG-GAEHIDAIARKGFKEDNPKVA 242
Query: 243 RLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
LL + ++ M + + + HPD +K WL
Sbjct: 243 SLLTKMSIPISELEAAMF--DAQETSYEKAVDKYIADHPDRIKEWLA 287
>gi|256111347|ref|ZP_05452373.1| Substrate-binding region of ABC-type glycine betaine transport
system [Brucella melitensis bv. 3 str. Ether]
Length = 288
Score = 185 bits (469), Expect = 7e-45, Method: Composition-based stats.
Identities = 60/288 (20%), Positives = 109/288 (37%), Gaps = 11/288 (3%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
+ + A A V+ W+D T + ++E+ LG K + V
Sbjct: 8 FGLAAVVAGTMTMGAAFAQDGKTVKIGWAPWSDAEFVTKLARKLIEDNLGQKVELVQTDV 67
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
++ + ID M W P + EG ++ + +GAK V D
Sbjct: 68 APLYQGVSRGDIDAMMIAWLPETHADYYKRV-EGKVENLGPLYEGAKLGWIVPDYIPESE 126
Query: 125 IKSYQDIAKY--KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ S +D+ K +++L +I GI+PG + + I ++L +SE A +
Sbjct: 127 VSSIEDLKKPEVREKLKGEIQGIDPGAGLTRLSQEAIKKYGLD---YKLNISSEAAMLTT 183
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ R R+ V SW PH + + Y+ + G G + V R + + P ++
Sbjct: 184 VDRANRSEGWFVATSWSPHWMFGKYKLRYIADPKGALG-GAEHIDAVARKGFKEDNPKVA 242
Query: 243 RLLKNIKFSVALENEMMKLI-LNNKQDRQFVGRTMLRTHPDLLKNWLI 289
LL + NE+ + + + + HPD +K WL
Sbjct: 243 ALLAKMSIP---INELEAAMFDAQETSYEKAVDKYIADHPDRIKEWLS 287
>gi|313901680|ref|ZP_07835112.1| Substrate-binding region of ABC-type glycine betaine transport
system [Thermaerobacter subterraneus DSM 13965]
gi|313468057|gb|EFR63539.1| Substrate-binding region of ABC-type glycine betaine transport
system [Thermaerobacter subterraneus DSM 13965]
Length = 306
Score = 185 bits (469), Expect = 7e-45, Method: Composition-based stats.
Identities = 60/302 (19%), Positives = 120/302 (39%), Gaps = 19/302 (6%)
Query: 1 MYKILAVCLFLTTFSISYA-----------RDADSCTPVRFADTGWTDIAATTAMTSVIL 49
++K++AV L+ ++ + + W + A + + +L
Sbjct: 11 LHKVVAVLATLSALVLAACGGAGGTGAGNGNSSGDKGSIEIGYIPWDEDIAVSYLWKQLL 70
Query: 50 EEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQG 109
EE GY+ + + V F ++ N ID+FM W PS + ++++
Sbjct: 71 EEE-GYRVTLTQVEVAPLFAAVANGSIDLFMDVWMPSTHGQYMDRFGD-QVEVLGTWYDQ 128
Query: 110 AKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
A LAV D A +S +D+ +Y G +I GIE G + + + L +
Sbjct: 129 ADLGLAVPDYVEA---RSIEDLKQYADRFGKRIVGIEAGAGLMRVTRESA-IPGYGLDDW 184
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF-GEASVYT 228
L+++S +++ R +N V W PH + +I YL + + G + T
Sbjct: 185 ELVQSSTPTMLAELDRAIQNREWIVVTLWRPHWAFAKYDIRYLEDPKGLMNPTGAEEIQT 244
Query: 229 VVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQD-RQFVGRTMLRTHPDLLKNW 287
+ R + + ++ L K + E+ I ++ D + + L + D+++ W
Sbjct: 245 IARQGFSEDFAEVAEWLGRFKLTGEQLAELEAAIQDHGADQPEKGVQAWLEENRDVVEAW 304
Query: 288 LI 289
L
Sbjct: 305 LK 306
>gi|294776157|ref|ZP_06741646.1| ABC transporter, substrate-binding protein, QAT family [Bacteroides
vulgatus PC510]
gi|294449980|gb|EFG18491.1| ABC transporter, substrate-binding protein, QAT family [Bacteroides
vulgatus PC510]
Length = 280
Score = 185 bits (469), Expect = 8e-45, Method: Composition-based stats.
Identities = 56/288 (19%), Positives = 120/288 (41%), Gaps = 11/288 (3%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M KIL ++ + W D A T +T VILE+ GY +K
Sbjct: 1 MKKILYFL--SFLLLLTSCSGKKDDKTISIGYINWDDGIALTYLTEVILEQQ-GYHVVLK 57
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ ++ +D+ M W P+ + + +++++ + A+ L V D
Sbjct: 58 NADPAPIYATMARGKVDLLMDAWLPATQADYMKQYGK-NLEILGKIYPDARIGLVVPDYV 116
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
I S + + K++ G +I GI+ G I ++L+E+S A
Sbjct: 117 ---DIHSIEQLNANKEKFGGEIIGIDAGAGIMHATDMTIEKYNLD---YKLLESSGPAMT 170
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ ++R + V W PH + + + +L + I G E ++ + R + ++ P
Sbjct: 171 AVLKRAVDEHQWIVVTGWTPHWMFTRFKLKFLEDPKGIFGKAE-TITAIARKGFGEQHPF 229
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+++L++NI S + ++ + N+ + + ++ H +L+ +W+
Sbjct: 230 VAKLIENIHLSTEEISSLLDDVSQNEYNEKEGAEKWVKEHQELVDSWI 277
>gi|89072349|ref|ZP_01158928.1| hypothetical ABC transporter, substrate binding protein
[Photobacterium sp. SKA34]
gi|89051881|gb|EAR57333.1| hypothetical ABC transporter, substrate binding protein
[Photobacterium sp. SKA34]
Length = 333
Score = 185 bits (469), Expect = 8e-45, Method: Composition-based stats.
Identities = 58/340 (17%), Positives = 110/340 (32%), Gaps = 39/340 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K+LA + L+ S + A C V AD W + S IL+ G +T++
Sbjct: 1 MRKLLAATVLLSAMSATQVY-ASECGKVTIADMNWNSATLLANVDSFILQHGYGCETDLV 59
Query: 61 LLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVND 118
T ++ DI +W S++ + +EEG I+ + G + V +
Sbjct: 60 PGDTMPTGTSMVEKGEPDIAPEFWSNSMKAALDRGVEEGRIQYAGTSFSDGGEEGFWVPE 119
Query: 119 VG--FALGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNNKFSLKGF 169
+ + + I K K Y G ++ K GF
Sbjct: 120 YMVKKDPSLATIEGIKKNAKLFSHPEDPDKSAFYNCPAGWNCQISAGNLFEALKLEDAGF 179
Query: 170 RLI-EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNI------------------- 209
LI S I + W P + +
Sbjct: 180 DLIDPGSGAGLSGSIAKAYERGEAWFGYYWAPTAVLGKYKMVKVDFGSGIDAKYFKECLT 239
Query: 210 HYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDR 269
+ S + + V TV+ + + + P + L F+ A N ++ + +N+ D
Sbjct: 240 KPECVDPKASMYPPSEVDTVITTSFAKRSPEAVKYLGQRSFTNAQMNSLLAWMEDNQADG 299
Query: 270 QFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMNN 309
+ V +L H D+ W+ + + ++ + +
Sbjct: 300 ETVMEEILTNHEDIWVKWVS-------PEVADKVRGALAD 332
>gi|254882040|ref|ZP_05254750.1| substrate binding domain of ABC-type glycine betaine transport
system [Bacteroides sp. 4_3_47FAA]
gi|319640952|ref|ZP_07995660.1| glycine betaine-binding protein [Bacteroides sp. 3_1_40A]
gi|254834833|gb|EET15142.1| substrate binding domain of ABC-type glycine betaine transport
system [Bacteroides sp. 4_3_47FAA]
gi|317387397|gb|EFV68268.1| glycine betaine-binding protein [Bacteroides sp. 3_1_40A]
Length = 280
Score = 185 bits (469), Expect = 8e-45, Method: Composition-based stats.
Identities = 56/288 (19%), Positives = 120/288 (41%), Gaps = 11/288 (3%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M KIL ++ + W D A T +T VILE+ GY +K
Sbjct: 1 MKKILYFL--SFLLLLASCSGKKDDKTISIGYINWDDGIALTYLTEVILEQQ-GYHVVLK 57
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ ++ +D+ M W P+ + + +++++ + A+ L V D
Sbjct: 58 NADPAPIYATMARGKVDLLMDAWLPATQADYMKQYGK-NLEILGKIYPDARIGLVVPDYV 116
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
I S + + K++ G +I GI+ G I ++L+E+S A
Sbjct: 117 ---DIHSIEQLNANKEKFGGEIIGIDAGAGIMHATDMAIEKYNLD---YKLLESSGPAMT 170
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ ++R + V W PH + + + +L + I G E ++ + R + ++ P
Sbjct: 171 AVLKRAVDEHQWIVVTGWTPHWMFTRFKLKFLEDPKGIFGKAE-TITAIARKGFGEQHPF 229
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+++L++NI S + ++ + N+ + + ++ H +L+ +W+
Sbjct: 230 VAKLIENIHLSTKEISSLLDDVSQNEYNEKEGAEKWVKEHQELVDSWI 277
>gi|261216183|ref|ZP_05930464.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
gi|260917790|gb|EEX84651.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
Length = 305
Score = 185 bits (469), Expect = 8e-45, Method: Composition-based stats.
Identities = 60/288 (20%), Positives = 110/288 (38%), Gaps = 11/288 (3%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
+ + A A V+ W+D T + ++E+ LG K + + V
Sbjct: 25 FGLAAVVAGTMTMGAAFAQDGKTVKIGWAPWSDAEFVTKLARKLIEDNLGQKVELVQIDV 84
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
++ + ID M W P + EG ++ + +GAK V D
Sbjct: 85 APLYQGVSRGDIDAMMMAWLPETHADYYKRV-EGKVENLGPLYEGAKLGWIVPDYIPESE 143
Query: 125 IKSYQDIAKY--KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ S +D+ K +++L +I GI+PG + + I ++L +SE A +
Sbjct: 144 VSSIEDLKKPEVREKLKGEIQGIDPGAGLTRLSQEAIKKYGLD---YKLNISSEAAMLTT 200
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ R R+ V SW PH + + Y+ + G G + V R + + P ++
Sbjct: 201 VDRANRSEGWFVATSWSPHWMFGKYKLRYIADPKGALG-GAEHIDAVARKGFKEDDPKVA 259
Query: 243 RLLKNIKFSVALENEMMKLI-LNNKQDRQFVGRTMLRTHPDLLKNWLI 289
LL + NE+ + + + + HPD +K WL
Sbjct: 260 ALLAKMSIP---INELEAAMFDAQETSYEKAVDKYIADHPDRIKEWLS 304
>gi|189022675|ref|YP_001932416.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein, hypothetical [Brucella abortus
S19]
gi|237816973|ref|ZP_04595965.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
gi|260759940|ref|ZP_05872288.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
gi|260763178|ref|ZP_05875510.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
86/8/59]
gi|189021249|gb|ACD73970.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein, hypothetical [Brucella abortus
S19]
gi|237787786|gb|EEP62002.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
gi|260670258|gb|EEX57198.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
gi|260673599|gb|EEX60420.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
86/8/59]
Length = 307
Score = 185 bits (469), Expect = 8e-45, Method: Composition-based stats.
Identities = 60/288 (20%), Positives = 109/288 (37%), Gaps = 11/288 (3%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
+ + A A V+ W+D T + ++E+ LG K + V
Sbjct: 27 FGLAAVVAGTMTMGAAFAQDGKTVKIGWAPWSDAEFVTKLARKLIEDNLGQKVELVQTDV 86
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
++ + ID M W P + EG ++ + +GAK V D
Sbjct: 87 APLYQGVSRGDIDAMMMAWLPETHADYYKRV-EGKVENLGPLYEGAKLGWIVPDYIPESE 145
Query: 125 IKSYQDIAKY--KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ S +D+ K +++L +I GI+PG + + I ++L +SE A +
Sbjct: 146 VSSIEDLKKPEVREKLKGEIQGIDPGAGLTRLSQEAIKKYGLD---YKLNISSEAAMLTT 202
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ R R+ V SW PH + + Y+ + G G + V R + + P ++
Sbjct: 203 VDRANRSEGWFVATSWSPHWMFGKYKLRYIADPKGALG-GAEHIDAVARKGFKEDDPKVA 261
Query: 243 RLLKNIKFSVALENEMMKLI-LNNKQDRQFVGRTMLRTHPDLLKNWLI 289
LL + NE+ + + + + HPD +K WL
Sbjct: 262 ALLAKMSIP---INELEAAMFDAQETSYEKAVDKYIADHPDRIKEWLS 306
>gi|330998255|ref|ZP_08322080.1| ABC transporter, substrate-binding protein, QAT family
[Paraprevotella xylaniphila YIT 11841]
gi|329568644|gb|EGG50445.1| ABC transporter, substrate-binding protein, QAT family
[Paraprevotella xylaniphila YIT 11841]
Length = 290
Score = 185 bits (469), Expect = 9e-45, Method: Composition-based stats.
Identities = 51/284 (17%), Positives = 107/284 (37%), Gaps = 12/284 (4%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
+ +T S + + + A W + A T + IL E G++ + +
Sbjct: 6 FITTIISSTLMTSCVINPN---KISIAYPNWAEGIAVTHLAREILVEQ-GFQVELLNADI 61
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
F SL D+F+ W P K +G +++ + A+ L V
Sbjct: 62 APIFTSLARGKTDVFLDSWLPVTHKPYFEKY-QGKFEILGQVFDSARIGLVVPAYVP--- 117
Query: 125 IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
I S +++ ++ + +I GI+ G + I ++L+ +S A + +
Sbjct: 118 INSIEELPEFTERFNGEIVGIDAGTGIMKCTETAIPTYGLD---YKLMISSGPAMTALLD 174
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
+ + V W PH + + L + I G E + + R+ + + P + L
Sbjct: 175 KAIKKKEWIVVTGWPPHWMFDRYELKVLDDPKNIYGASEY-IRAIARTGFSKEHPFAAEL 233
Query: 245 LKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
L NI + + +M I + + R ++ + L+ +W+
Sbjct: 234 LGNIHLTDRQISSLMSAIEQTRGTEREAVREWIKQNRALVDSWI 277
>gi|225571297|ref|ZP_03780293.1| hypothetical protein CLOHYLEM_07395 [Clostridium hylemonae DSM
15053]
gi|225159773|gb|EEG72392.1| hypothetical protein CLOHYLEM_07395 [Clostridium hylemonae DSM
15053]
Length = 619
Score = 185 bits (468), Expect = 9e-45, Method: Composition-based stats.
Identities = 74/322 (22%), Positives = 118/322 (36%), Gaps = 25/322 (7%)
Query: 1 MYKILAVCLFLTTFSISYA---RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M K+L++ L+ ++ A AD + FAD GW I A+ +I EEI GY
Sbjct: 1 MKKLLSLFAALSITVMTCAPPVSAADEKKEIVFADVGWDSIELNNAIAGLIAEEIFGYTW 60
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+ + P+T +L N ID+ M W ++ L G + N L +
Sbjct: 61 SEVPGSTPITHEALINSEIDVNMEEWTNNITT-YQEDLNAGKFTELGINFDDNYQGLYIP 119
Query: 118 DVGFA--LGIKSYQDIAKYKKELGAK-------IYGIEPGNEGNQRILDMINNNKFSLKG 168
+K+ +D+AKY + IYG PG E + + IN
Sbjct: 120 AYVAEKYPDLKNVKDLAKYPELFADPEDPDKGVIYGGIPGWEATEIMQKKINAYGLDEYY 179
Query: 169 FRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPG-GEEISGF------ 221
++ S A S I P V WEP + ++ L + + +
Sbjct: 180 NYVVPGSTPALDSVITSAWDKKEPFVAYYWEPTWLMGKYDLVLLEDSPYDAATYKDGIGA 239
Query: 222 -GEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+V V +D+ P L L +E + + +NK D R +L H
Sbjct: 240 CPAVTVTIAVSNDFAQSNPEFCDFLSKYHTGSQLISEGLAYMQDNKADHSEAARWLLTQH 299
Query: 281 PDLLKNWLIGVTTFDGQDPSRQ 302
P+L + WL T D +
Sbjct: 300 PELAEEWL----TPDQEKTLAA 317
>gi|254695771|ref|ZP_05157599.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein, hypothetical [Brucella abortus
bv. 3 str. Tulya]
Length = 288
Score = 185 bits (468), Expect = 1e-44, Method: Composition-based stats.
Identities = 60/288 (20%), Positives = 110/288 (38%), Gaps = 11/288 (3%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
+ + A A V+ W+D T + ++E+ LG K + + V
Sbjct: 8 FGLAAVVAGTMTMGAAFAQDGKTVKIGWAPWSDAEFVTKLARKLIEDNLGQKVELVQIDV 67
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
++ + ID M W P + EG ++ + +GAK V D
Sbjct: 68 APLYQGVSRGDIDAMMMAWLPETHADYYKRV-EGKVENLGPLYEGAKLGWIVPDYIPESE 126
Query: 125 IKSYQDIAKY--KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ S +D+ K +++L +I GI+PG + + I ++L +SE A +
Sbjct: 127 VSSIEDLKKPEVREKLKGEIQGIDPGAGLTRLSQEAIKKYGLD---YKLNISSEAAMLTT 183
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ R R+ V SW PH + + Y+ + G G + V R + + P ++
Sbjct: 184 VDRANRSEGWFVATSWSPHWMFGKYKLRYIADPKGALG-GAEHIDAVARKGFKEDDPKVA 242
Query: 243 RLLKNIKFSVALENEMMKLI-LNNKQDRQFVGRTMLRTHPDLLKNWLI 289
LL + NE+ + + + + HPD +K WL
Sbjct: 243 ALLAKMSIP---INELEAAMFDAQETSYEKAVDKYIADHPDRIKEWLS 287
>gi|62317421|ref|YP_223274.1| glycine betaine/L-proline ABC transporter periplasmic glycine
betaine-binding protein [Brucella abortus bv. 1 str.
9-941]
gi|83269401|ref|YP_418692.1| glycine betaine ABC transporter ATP-binding protein [Brucella
melitensis biovar Abortus 2308]
gi|254698702|ref|ZP_05160530.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein, hypothetical [Brucella abortus
bv. 2 str. 86/8/59]
gi|254732148|ref|ZP_05190726.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein, hypothetical [Brucella abortus
bv. 4 str. 292]
gi|260544660|ref|ZP_05820481.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
gi|62197614|gb|AAX75913.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein, hypothetical [Brucella abortus
bv. 1 str. 9-941]
gi|82939675|emb|CAJ12668.1| ATP/GTP-binding site motif A (P-loop):Substrate-binding region of
ABC-type glycine betaine transport system [Brucella
melitensis biovar Abortus 2308]
gi|260097931|gb|EEW81805.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
Length = 288
Score = 185 bits (468), Expect = 1e-44, Method: Composition-based stats.
Identities = 60/288 (20%), Positives = 109/288 (37%), Gaps = 11/288 (3%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
+ + A A V+ W+D T + ++E+ LG K + V
Sbjct: 8 FGLAAVVAGTMTMGAAFAQDGKTVKIGWAPWSDAEFVTKLARKLIEDNLGQKVELVQTDV 67
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
++ + ID M W P + EG ++ + +GAK V D
Sbjct: 68 APLYQGVSRGDIDAMMMAWLPETHADYYKRV-EGKVENLGPLYEGAKLGWIVPDYIPESE 126
Query: 125 IKSYQDIAKY--KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ S +D+ K +++L +I GI+PG + + I ++L +SE A +
Sbjct: 127 VSSIEDLKKPEVREKLKGEIQGIDPGAGLTRLSQEAIKKYGLD---YKLNISSEAAMLTT 183
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ R R+ V SW PH + + Y+ + G G + V R + + P ++
Sbjct: 184 VDRANRSEGWFVATSWSPHWMFGKYKLRYIADPKGALG-GAEHIDAVARKGFKEDDPKVA 242
Query: 243 RLLKNIKFSVALENEMMKLI-LNNKQDRQFVGRTMLRTHPDLLKNWLI 289
LL + NE+ + + + + HPD +K WL
Sbjct: 243 ALLAKMSIP---INELEAAMFDAQETSYEKAVDKYIADHPDRIKEWLS 287
>gi|54303456|ref|YP_133449.1| ABC transporter substrate-binding protein [Photobacterium profundum
SS9]
gi|46916886|emb|CAG23649.1| hypothetical ABC transporter, substrate binding protein
[Photobacterium profundum SS9]
Length = 332
Score = 185 bits (468), Expect = 1e-44, Method: Composition-based stats.
Identities = 62/334 (18%), Positives = 103/334 (30%), Gaps = 33/334 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M KILA L L T S + + A+ C V AD W + IL+ G +
Sbjct: 1 MRKILAASLVLATASFTVS--AEECGKVTIADMNWNSATLIANVDRFILDHGYGCDAELV 58
Query: 61 LLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVND 118
T ++ DI +W S++ + +EEG I+ +L +G + V
Sbjct: 59 PGDTMPTGSSMVEKGQPDIAPEFWSNSMKAALDKGVEEGRIRYAGSSLSEGGEEGFWVPA 118
Query: 119 VG--FALGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNNKFSLKGF 169
+ + + I K G + N + GF
Sbjct: 119 YMVQKDPTLATIEGIKANAKLFEHPEDPDKSAFMTCPAGWNCQISAGHLFNALELDKSGF 178
Query: 170 RLI-EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--------- 219
LI S I + W P + + + G I
Sbjct: 179 DLIDPGSGAGLSGSIAKAYEREEAWFGYYWAPTAVLGKYKMVKVDFGSGIDEKQFTDCIS 238
Query: 220 ----------GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDR 269
+ + V TVV + + P L F+ A N ++ + +N+ D
Sbjct: 239 NEDCLDPKPTMYPPSPVDTVVTETFAKRAPAAMEYLSIRSFTNAKMNALLAWMEDNQADG 298
Query: 270 QFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQL 303
+F L +PD+ W+ T + L
Sbjct: 299 EFAAEHFLNENPDIWMTWVSPETADKVKKALAAL 332
>gi|90410057|ref|ZP_01218074.1| hypothetical ABC transporter, substrate binding protein
[Photobacterium profundum 3TCK]
gi|90329410|gb|EAS45667.1| hypothetical ABC transporter, substrate binding protein
[Photobacterium profundum 3TCK]
Length = 332
Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats.
Identities = 56/338 (16%), Positives = 111/338 (32%), Gaps = 40/338 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M KILA L L S+S+ A+ C V AD W + IL+ G +
Sbjct: 1 MRKILATSLVLA--SVSFTASAEECGKVTIADMNWNSATLIANIDRFILDHGYGCDAELV 58
Query: 61 LLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVND 118
T ++ D+ +W S++ + ++EG I+ +L +G + V +
Sbjct: 59 PGDTMPTGASMIEKGQPDVAPEFWSNSMKAALDKGVDEGRIRYAGSSLSEGGEEGFWVPE 118
Query: 119 VG--FALGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNNKFSLKGF 169
+ + + + K G G ++ N + GF
Sbjct: 119 YMVKKDPTLATIEGVKANAKLFEHPEDPDKSAFMGCPAGWNCQISAGNLFNALELDKAGF 178
Query: 170 RLI-EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG------------- 215
LI S I + W P + + + G
Sbjct: 179 DLIDPGSGAGLSGSIAKAYEREEAWFGYYWAPTAVLGKYKMVKVDFGSGVDEKQFKDCTT 238
Query: 216 ------EEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDR 269
+++ + + V TVV + + P L + F+ A N ++ + +N+ D
Sbjct: 239 NEDCLDPKVTMYPPSPVDTVVTETFAKRAPAAMEYLSSRAFTNAKMNALLAWMEDNQADG 298
Query: 270 QFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ L + D+ W+ T + ++++ +
Sbjct: 299 ELAAEEFLNENSDIWMKWVSPET-------ADKVKKAL 329
>gi|116617483|ref|YP_817854.1| ABC-type proline/glycine betaine transport system, permease
component [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|116096330|gb|ABJ61481.1| ABC-type proline/glycine betaine transport system, permease
component [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
Length = 571
Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats.
Identities = 63/286 (22%), Positives = 114/286 (39%), Gaps = 13/286 (4%)
Query: 4 ILAVCLFLTTFSI--SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+LA L + + + D + V W A++ + + L + GY +
Sbjct: 295 VLAALLVMIGGGVVNTLTSDKTTGQKVTIGYVEWDSEVASSNVLAESLRQH-GYDVTLTP 353
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
L V ++SL N IDI + W P K + + + L+ NL+G K L V D
Sbjct: 354 LDNAVLWQSLSNNQIDISVSAWLPDTHKALYDKY-KNDVTLLGPNLKGVKTGLVVPDYM- 411
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
I+ + I GIEPG + + + +L G+ L +S A S
Sbjct: 412 -----DVNSISDLTTQANKTITGIEPGAGEMATAANALKSYS-NLSGWNLSSSSSGAMVS 465
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNI 241
+ + +N V W PH + S ++ +L + + G GE ++ T+V + P
Sbjct: 466 ALDKAYKNKQDVVVTGWSPHWMFSKYHLKFLSDPKNVFGSGE-TINTIVNKKFKTSNPKA 524
Query: 242 SRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
++ N ++ +M I N Q + +++H L+ +W
Sbjct: 525 YKVADNFNWTKDDMESVMLDI-QNGQTPKQAAAKWIKSHQKLVDSW 569
>gi|188586237|ref|YP_001917782.1| Substrate-binding region of ABC-type glycine betaine transport
system [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179350924|gb|ACB85194.1| Substrate-binding region of ABC-type glycine betaine transport
system [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 293
Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats.
Identities = 57/293 (19%), Positives = 107/293 (36%), Gaps = 14/293 (4%)
Query: 4 ILAVCLFLTTFSISYARDADSCT-------PVRFADTGWTDIAATTAMTSVILEEILGYK 56
+LA + T ++ + + A W A T + ++E LGY
Sbjct: 8 VLATVFLVGTIGLAGCDEPAQDGDPEGTQEEIELAYVNWACAEAQTHVAQEVIESELGYD 67
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
I + + + D + W P + +G + + +GA+ L V
Sbjct: 68 VEITMADAGPIWADVAAGNQDGMVCAWLPVTQGEYDDEY-DGDVDNLGPVYEGARIGLVV 126
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ I S +++ + EL +I GIEPG + + SL F LI++S+
Sbjct: 127 PEYV---DIDSIEEMDEIADELDNEIVGIEPGAGIMINTDEALEEYD-SLAEFELIDSSD 182
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
+ + N P V W PH ++ ++ +L + G E + V R D
Sbjct: 183 AGMTTSLSDAVDNEEPIVVTGWTPHWKFAEWDLEFLEDPLNVYGE-EEHIAAVARQGLED 241
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
P++ L N E+M ++ D + + + D+++ WL
Sbjct: 242 DAPDVYEFLDNYIMDDDQIGEVMG-MIEETDDPEASAEEWVEENQDVVQEWLD 293
>gi|307320890|ref|ZP_07600299.1| Substrate-binding region of ABC-type glycine betaine transport
system [Sinorhizobium meliloti AK83]
gi|306893488|gb|EFN24265.1| Substrate-binding region of ABC-type glycine betaine transport
system [Sinorhizobium meliloti AK83]
Length = 333
Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats.
Identities = 50/337 (14%), Positives = 103/337 (30%), Gaps = 39/337 (11%)
Query: 3 KILA-VCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
K+LA C + S++ A+ C V A+ W I + +ILE G I +
Sbjct: 4 KLLAPACFAVGLTSLTQGAFAEECGDVVIANMNWQSIDVLANIDKIILENGYGCSAEITI 63
Query: 62 LAVPVTFRSL-KNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVNDV 119
S+ + DI W +L + ++ + EG + L G +
Sbjct: 64 GDTVSIMTSMIEKGEPDIAPEAWLNALPEIVSRGIAEGKLISAGNALSDGGIQGWYIPKY 123
Query: 120 GFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
+K + + + G + + KGF
Sbjct: 124 IADAHPEIKTVSDALKHPELFPAPEDSSKGAVVNGPSGWGASTTTSQLYKAYDGDAKGFV 183
Query: 171 LI-EASELASFSQIRRDQRNNIPAVFLSWEPHPI-------------------NSDLNIH 210
L+ S I ++ I W P + N
Sbjct: 184 LVDPGSAAGLDGSIVKNYERKIGWFGYYWSPTSLLGKYPMVKLDFDAPHNAAEWKRCNTV 243
Query: 211 YLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQ 270
+++ + V T+V ++ ++ LK ++ A N ++ + +N+ +
Sbjct: 244 VDCEDPKVNDWPTDKVETLVTREFKERAGAAMDYLKTRRWDNATLNSLLAWMTDNQATGE 303
Query: 271 FVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
R L +P++ WL + + ++ +
Sbjct: 304 DAARYFLEKNPEIWTKWLS-------PEIAEKVRSSL 333
>gi|297618551|ref|YP_003706656.1| glycine betaine ABC transporter substrate-binding protein
[Methanococcus voltae A3]
gi|297618611|ref|YP_003706716.1| glycine betaine ABC transporter substrate-binding protein
[Methanococcus voltae A3]
gi|297377528|gb|ADI35683.1| Substrate-binding region of ABC-type glycine betaine transport
system [Methanococcus voltae A3]
gi|297377588|gb|ADI35743.1| Substrate-binding region of ABC-type glycine betaine transport
system [Methanococcus voltae A3]
Length = 306
Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats.
Identities = 64/293 (21%), Positives = 109/293 (37%), Gaps = 11/293 (3%)
Query: 3 KILAVCLFLTTFSISYA------RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
KIL V L S + D V+ W + + + ILE GY
Sbjct: 16 KILLVALISIMVSFAGCVGSDDTADKTDEKVVKLGLPPWPGVTVKSEVVKEILESK-GYT 74
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ L + + L + +D + W P + + NL A LAV
Sbjct: 75 VELVKLDAGIVYAQLADGELDGTLAGWLPVTHAEYWKQYGD-KLDKANANLDVACVGLAV 133
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ + GI + D+ + I GIEPG I + + + ++L +S
Sbjct: 134 PNYVYDSGITTIADLKGNGDKFDGTIIGIEPGAGVVINTEKAITDYELN--NYKLKTSST 191
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
A +++ + +N V WEPH NI L E + G G VYT+VR D+ D
Sbjct: 192 PAMIAELDKSIKNEEFVVVTLWEPHSAFVKFNITMLEDPENVYG-GTEQVYTIVRKDFKD 250
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
P + + S A ++E + + ++ V + + +P+ + W
Sbjct: 251 DNPEVYSFFQKFNISSATQSEWIYKYSDLNEEPSEVAKEWVANNPEAVAEWTK 303
>gi|21226144|ref|NP_632066.1| glycine betaine transporter, substrate-binding protein
[Methanosarcina mazei Go1]
gi|19224204|gb|AAL86440.1|AF475089_3 substrate binding protein OtaC [Methanosarcina mazei Go1]
gi|20904369|gb|AAM29738.1| Glycine betaine transporter, substrate-binding protein
[Methanosarcina mazei Go1]
Length = 306
Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats.
Identities = 56/296 (18%), Positives = 105/296 (35%), Gaps = 19/296 (6%)
Query: 4 ILAVCLFLTTFSISYARDADSC-----------TPVRFADTGWTDIAATTAMTSVILEEI 52
I+ + L L F A D PV W A+T + +L++
Sbjct: 13 IVGLVLGLFIFGAGCADDTQEGTEETADAAEYNQPVEIGYVLWDGEIASTNVIQQVLQQA 72
Query: 53 LGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKY 112
I + ++ + + D W P + + I V NL+
Sbjct: 73 GYTDVEIIAVDAGPLYQGVASGEFDFTTSAWLPQTQANYWETYGD-RIDSVRVNLEDCTI 131
Query: 113 MLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
LAV + S +D+ K+ +I GI+PG Q D+I + L+
Sbjct: 132 GLAVPTYVEE--VNSIEDLNDNKEMFNGEIIGIDPGAGVMQITEDVIEAYDLD---YTLV 186
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRS 232
+S + ++R N P V W PH + ++ YL + G + +V T+ R
Sbjct: 187 SSSSAGMTAALQRAINNEEPVVVTLWSPHWAFNRWDLKYLDDPQGYYGEAD-NVETLARQ 245
Query: 233 DYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+ PN+ +L+ ++ +M I + + + +P+ + W+
Sbjct: 246 GLEEDMPNLYGILERFAWTHEDIQSVMVDI-ESGMAPEEAAAKWVENNPEKVNEWI 300
>gi|307308331|ref|ZP_07588036.1| Substrate-binding region of ABC-type glycine betaine transport
system [Sinorhizobium meliloti BL225C]
gi|306901132|gb|EFN31739.1| Substrate-binding region of ABC-type glycine betaine transport
system [Sinorhizobium meliloti BL225C]
Length = 333
Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats.
Identities = 50/337 (14%), Positives = 103/337 (30%), Gaps = 39/337 (11%)
Query: 3 KILA-VCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
K+LA C + S++ A+ C V A+ W I + +ILE G I +
Sbjct: 4 KLLAPACFAVGLTSLTQGAFAEECGDVVIANMNWQSIDVLANIDKIILENGYGCSAEITI 63
Query: 62 LAVPVTFRSL-KNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVNDV 119
S+ + DI W +L + ++ + EG + L G +
Sbjct: 64 GDTVSIMTSMIEKGEPDIAPEAWLNALPEIVSRGIAEGKLISAGNALSDGGIQGWYIPKY 123
Query: 120 GFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
+K + + + G + + KGF
Sbjct: 124 IADAHPEIKTVSDALKHPELFPAPEDSSKGAVVNGPSGWGASTTTSQLYKAYDGDAKGFV 183
Query: 171 LI-EASELASFSQIRRDQRNNIPAVFLSWEPHPI-------------------NSDLNIH 210
L+ S I ++ I W P + N
Sbjct: 184 LVDPGSAAGLDGSIVKNYERKIGWFGYYWSPTSLLGKYPMVKLDFDAPHNAAEWKRCNTV 243
Query: 211 YLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQ 270
+++ + V T+V ++ ++ LK ++ A N ++ + +N+ +
Sbjct: 244 VDCEDPKVNDWPTDKVETLVTREFKERAGAAMDYLKTRRWDNATLNSLLAWMTDNQATGE 303
Query: 271 FVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
R L +P++ WL + + ++ +
Sbjct: 304 DAARYFLEKNPEIWTEWLS-------PEIAEKVRSSL 333
>gi|332638601|ref|ZP_08417464.1| ABC-type proline/glycine betaine transport system, permease
component [Weissella cibaria KACC 11862]
Length = 572
Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats.
Identities = 53/285 (18%), Positives = 109/285 (38%), Gaps = 10/285 (3%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
+AV + T + + V W A++ + + + E GY + L
Sbjct: 298 VAVAMVGTGVINAVTSTKSAKESVNLVYVQWDSEVASSNVLAEAMREH-GYNVKLTPLDN 356
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
+ ++S+ N D + W P+ ++ I L+ NL GA V
Sbjct: 357 SIMWQSVANGQADASVSAWLPNTHAAQYKKYKD-QIDLLGPNLTGATTGFVVPSYM---- 411
Query: 125 IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
+ Q I+ + G + GIEPG + + + +G+ + +S A +
Sbjct: 412 --NVQSISDLTTQAGKTVTGIEPGAGVMKSADKALADYGLKEQGWTVTPSSSGAMAVALG 469
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
+ + + V W+PH + ++ YL ++ G E+ + T R P++ ++
Sbjct: 470 KAIKEHKDIVITGWQPHWMFQKYDLKYLKDPKQSFGKAES-INTFTRKGLKADKPDVYKV 528
Query: 245 LKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
LKN ++ E+M +N + + + ++ HP + W
Sbjct: 529 LKNFHWTKEDMGEVMLA-TSNGKSAKEAAKDWIKAHPKQVDAWFK 572
>gi|153808446|ref|ZP_01961114.1| hypothetical protein BACCAC_02740 [Bacteroides caccae ATCC 43185]
gi|149128768|gb|EDM19985.1| hypothetical protein BACCAC_02740 [Bacteroides caccae ATCC 43185]
Length = 288
Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats.
Identities = 55/288 (19%), Positives = 116/288 (40%), Gaps = 8/288 (2%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+YK++ + L +S V+ A W + A + + V+LEE GY+ ++
Sbjct: 3 IYKLVGIVLSALLLLVSCTNSDVDKKKVKIAYANWLEGIAMSHLAKVVLEEQ-GYEVELQ 61
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ F S+ K D+F+ W P K + ++ + E A+ L V
Sbjct: 62 NADLAPIFVSMSGKKSDVFLDAWLPITMKDYLNQYGDS-LEFLGEVYGEARVGLVVPQYV 120
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
I S ++A K ++I GI+ G + I+ G+ L+ +S
Sbjct: 121 ---TINSIDELAANKDRFSSEIVGIDAGAGIMKTTDKAISAYGLD--GYTLMTSSSSTML 175
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ +++ V W PH + ++ +L +++ G ++ V + +K P
Sbjct: 176 ASLKKAMDKGEWIVITGWTPHWMFDQFDLKFLNDPKKVYGD-LEEIHAVAWKGFSEKDPF 234
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+ NIK + + M + + + + + + R + H +L+ +W+
Sbjct: 235 AAEFFANIKLTTEELSSFMTAMKDARMNEEEIARKWRKEHRELVDSWI 282
>gi|332703712|ref|ZP_08423800.1| ABC-type glycine betaine transport, periplasmic subunit
[Desulfovibrio africanus str. Walvis Bay]
gi|332553861|gb|EGJ50905.1| ABC-type glycine betaine transport, periplasmic subunit
[Desulfovibrio africanus str. Walvis Bay]
Length = 284
Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats.
Identities = 67/289 (23%), Positives = 111/289 (38%), Gaps = 8/289 (2%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M L V L + A A + V A W A+T + +L+E LGY I
Sbjct: 1 MRFTLKVFLTAMAVLLISAPSAFAAKKVTLAYVEWDCAVASTNVARAVLQEKLGYDVEIL 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+A ++++ +D + W P K A L +G + + + GAK AV
Sbjct: 61 PVAAAAMWQAVATGDVDGMVTAWLPETHKNYADRL-KGKFENLGPIVGGAKLGWAVPKYV 119
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
I S D+ K+ + ++YGI+PG Q + K + F L+E S
Sbjct: 120 ---DIDSIADLNKHADKFDGRVYGIDPGAGLMQLSEKAMEEYKLNK--FELMEGSGATMT 174
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ + +N V +W PH + + YL + I G GE + T+VR P
Sbjct: 175 AALADAIKNKQWVVVTAWSPHWMFGRWELKYLDDPKGILG-GEEHIDTIVRKGLKQDMPK 233
Query: 241 ISRLLKNIKFSVALENEM-MKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+ + ++ + +M M D + +P L+ WL
Sbjct: 234 VYAFMDRFQWDSPDQLQMVMAWNQEPDADPYKNAVRFINENPKLVNGWL 282
>gi|294495022|ref|YP_003541515.1| substrate-binding region of ABC-type glycine betaine transporter
[Methanohalophilus mahii DSM 5219]
gi|292666021|gb|ADE35870.1| Substrate-binding region of ABC-type glycine betaine transport
system [Methanohalophilus mahii DSM 5219]
Length = 298
Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats.
Identities = 52/297 (17%), Positives = 107/297 (36%), Gaps = 22/297 (7%)
Query: 4 ILAVCLFLTTFSISYARDADSCTP------------VRFADTGWTDIAATTAMTSVILEE 51
++ + L L+ F+ A+ D V A W ATT + + ++
Sbjct: 9 LVGILLVLSLFAAGCAQQGDEGDTDDGNQTQTEEKSVTIAYVQWASAVATTNVVQEVFQK 68
Query: 52 ILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAK 111
GY+ + +A + ++ + N D + W P+ + I+ V N K
Sbjct: 69 D-GYEVELNNVAAGIMYQGIANGNADFSVCAWLPNTQANYWEQYGG-QIENVNVNTPNVK 126
Query: 112 YMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
L V + + ++ + + I GI+PG + + I G+ L
Sbjct: 127 TGLVVPQYV---DVDTIPELKGNESKFEGTITGIDPGAGIMSQTDEAIQEYGLD--GYTL 181
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVR 231
+S S + + P + W PH + ++ YL +++ +G + T+ R
Sbjct: 182 QASSGPGMTSALTSAIADEEPIIVTLWNPHWAFARWDLKYLDDPKDV--YGSDDIVTIAR 239
Query: 232 SDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+ P +L K++V ++M I + + +P+ + WL
Sbjct: 240 PGLKEDKPQAYEILTRFKWTVTDNEKVMSYID-QGMSAEEAAEKWVSDNPEKVNEWL 295
>gi|330447869|ref|ZP_08311517.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328492060|dbj|GAA06014.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 333
Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats.
Identities = 59/340 (17%), Positives = 115/340 (33%), Gaps = 39/340 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K+LA + LT S + A A C V AD W + S IL+ G +T++
Sbjct: 1 MRKLLAATVLLTAMSATQAY-ASECGKVTIADMNWNSATLLANVDSFILQHGYGCETDLV 59
Query: 61 LLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVND 118
T ++ DI +W S++ + +EEG I ++ G + V +
Sbjct: 60 PGDTMPTGTSMVEKGEPDIAPEFWSNSMKAALDRGVEEGRILYAGKSFSDGGEEGFWVPE 119
Query: 119 VGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
K+ + + + + Y G ++ K GF
Sbjct: 120 YMVKKDPSLATIEGIKKNAKLFKHPEDDDKSAFYNCPAGWNCQISAGNLFEALKLEDAGF 179
Query: 170 RLI-EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG------------- 215
LI S I + W P + + + G
Sbjct: 180 DLIDPGSGAGLSGSIAKAYERGEAWFGYYWAPTAVLGKYKMVKVDFGSGIDAKYFKECLT 239
Query: 216 ------EEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDR 269
++S + +++V TV+ + + + P L F+ A N ++ + +N+ D
Sbjct: 240 NTECVDPKVSMYPQSNVDTVITTSFAKRSPAAVEYLGKRSFTNAQMNSLLAWMEDNQADG 299
Query: 270 QFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMNN 309
+ V +L H D+ W+ + + ++ + +
Sbjct: 300 EAVMEEVLTNHEDIWVKWVS-------PEVADKVRGALAD 332
>gi|298529249|ref|ZP_07016652.1| Substrate-binding region of ABC-type glycine betaine transport
system [Desulfonatronospira thiodismutans ASO3-1]
gi|298510685|gb|EFI34588.1| Substrate-binding region of ABC-type glycine betaine transport
system [Desulfonatronospira thiodismutans ASO3-1]
Length = 283
Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats.
Identities = 60/274 (21%), Positives = 106/274 (38%), Gaps = 8/274 (2%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNK 74
+ +A + + A W A+T + +L+E LGY ++ ++ + +
Sbjct: 16 MGFASSNAGAQDRLTLAYVEWDCAVASTDVAKAVLQEELGYNVESMSVSAAAMWQGVASG 75
Query: 75 GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKY 134
+D + W P EG ++ + + GAK L V + I S +D+ Y
Sbjct: 76 DVDAHVAAWLPVTHGDYMDA-TEGQLEDLGKLTDGAKIGLVVPEYV---DIDSIEDLNDY 131
Query: 135 KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAV 194
E +I GI+PG R + ++ + F L E S+ + +R R + V
Sbjct: 132 ADEFNGRITGIDPGAGIMSRTEEALDEYGLTE--FELQEGSDATMSAALRDATRRDEWIV 189
Query: 195 FLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVAL 254
W PH ++ YL +E+ G E + + R D P LKN ++
Sbjct: 190 VTGWSPHWKFGRWDLKYLEDPKEVYGEAE-HISKMARQGLADDAPEAYEFLKNFSWTQEE 248
Query: 255 ENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+M+ + D + HPDL+ WL
Sbjct: 249 MAVLMEW-NEDGGDSYENAVRFIEEHPDLVDQWL 281
>gi|258405595|ref|YP_003198337.1| Substrate-binding region of ABC-type glycine betaine transport
system [Desulfohalobium retbaense DSM 5692]
gi|257797822|gb|ACV68759.1| Substrate-binding region of ABC-type glycine betaine transport
system [Desulfohalobium retbaense DSM 5692]
Length = 280
Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats.
Identities = 59/290 (20%), Positives = 120/290 (41%), Gaps = 10/290 (3%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
++ + L + A + V A W + A+T + +LE+ +GY I
Sbjct: 1 MRLRNLIGVLVALFLVCPAVAQAQPEVELAYVEWAETVASTNVVQTVLED-MGYDVEITP 59
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
++ +++ +D F G W P + L++ ++++ +NL GAK LAV +
Sbjct: 60 VSAAAMWQATATGDVDGFTGGWLPVTQGEYHEKLKD-EVEVINKNLNGAKIGLAVPEYVE 118
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
I S ++ ++ +I GI+PG + ++ L+ S +
Sbjct: 119 ---IDSIAELNANAEKFREEIIGIDPGAGIMGKAEKALDQYNMD--NMELVAGSGATMTA 173
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNI 241
++ P V +W PH + S ++ YL + G E + TVVR + + P +
Sbjct: 174 VLKNRYEEKEPVVVTAWTPHWMFSRWDLKYLKDPKGTFGQAEY-IATVVRPELKNDMPKV 232
Query: 242 SRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGV 291
LKN ++++ ++M I ++ + + +P+ +K W G
Sbjct: 233 YNFLKNFEWTLDECQQVMLWIEDS--TPEEAAERWVEENPEKVKAWKQGA 280
>gi|260771577|ref|ZP_05880497.1| L-proline glycine betaine binding ABC transporter protein proX
[Vibrio metschnikovii CIP 69.14]
gi|260613354|gb|EEX38553.1| L-proline glycine betaine binding ABC transporter protein proX
[Vibrio metschnikovii CIP 69.14]
Length = 225
Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats.
Identities = 88/224 (39%), Positives = 136/224 (60%), Gaps = 2/224 (0%)
Query: 87 LEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE 146
+E IA Y E G+++ V NL+GAKY LAV + GI S+ D+AK+ + +I G+E
Sbjct: 1 MEADIARYREAGTVETVRANLEGAKYTLAVPQYVYDAGITSFADLAKHSDKFRNRILGLE 60
Query: 147 PGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSD 206
PGN+GN+ +L MI ++ + L F ++E+SE SQ++R R FL WEPHP+N+
Sbjct: 61 PGNDGNRALLSMIEDDAYGLGEFSIVESSEAGMLSQVQRSVRRQQWVAFLGWEPHPMNTM 120
Query: 207 LNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILN 264
+++ YL GG++ +G ASV+T VR +YL++C N+ L N+ FS+ ENE+M ILN
Sbjct: 121 VDMVYLSGGDDYFGPNYGGASVHTNVRQNYLNECENVGNFLTNLVFSLESENELMDAILN 180
Query: 265 NKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
Q + + L+ +P+ L WL VTT DGQ + +++
Sbjct: 181 QNQSPEQAAQQWLQANPETLSRWLNNVTTIDGQPALAAVNLYLS 224
>gi|330718294|ref|ZP_08312894.1| OpuABC protein [Leuconostoc fallax KCTC 3537]
Length = 569
Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats.
Identities = 57/293 (19%), Positives = 110/293 (37%), Gaps = 15/293 (5%)
Query: 1 MYKILAVCLFLTTFSISYA----RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
+ K L + + + + V W A+ + + + + GYK
Sbjct: 288 IKKWLVLATAIVMIGSGVVNHLMSNQSTGKQVNLVYVEWDSEVASNNVLAEAMRQH-GYK 346
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
N+ L V ++S+ + D + W P+ K +A + + + NL+G K L V
Sbjct: 347 VNMTPLDNAVVWQSVASGQADASISAWLPNTHKALAQKY-KNDVTNLGPNLKGVKTGLVV 405
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
D IA + I GIEPG + + +L ++L +S
Sbjct: 406 PDYM------DVNSIADLSNQANKTITGIEPGAGIMTSTNKAMKDYS-NLSDWKLTSSSS 458
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
A + R +N+ V W PH + S + YL ++ G E ++ T+VR D
Sbjct: 459 GAMAIALERAYKNHQDIVITGWSPHWLFSKYKLKYLEDPKQSMGKTE-NIETIVRKDLKQ 517
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
P++ ++ N ++ +M + N + + + + H + +W
Sbjct: 518 DKPDVYKIFNNFHWTSQDMQSVMLDV-QNGKSPEQAAKNWISQHKSEVDSWFK 569
>gi|307352361|ref|YP_003893412.1| Substrate-binding region of ABC-type glycine betaine transport
system [Methanoplanus petrolearius DSM 11571]
gi|307155594|gb|ADN34974.1| Substrate-binding region of ABC-type glycine betaine transport
system [Methanoplanus petrolearius DSM 11571]
Length = 304
Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats.
Identities = 50/266 (18%), Positives = 101/266 (37%), Gaps = 10/266 (3%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYW 83
S V W A+T + E+ GY + + +++L + +D + W
Sbjct: 49 SKDEVSIGYVLWDSEIASTNVLKQAFEKA-GYDVELYAVDAGPLYQALADGDVDCSVSAW 107
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIY 143
PS + + I LV N++G K L V I S ++ + + I
Sbjct: 108 LPSTQANYWDTYGD-DIDLVGRNMEGTKIGLVVPTYV---TIDSIDEMNGVADKFDSTIT 163
Query: 144 GIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPI 203
GIEPG Q + I+ + L+ +S +++ + ++ V W PH +
Sbjct: 164 GIEPGAGIMQNTEEAIDEYGLD---YTLLSSSSAGMTAELAKAYKDEDWIVVTGWTPHWM 220
Query: 204 NSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLIL 263
S ++ YL + + G G+ + T+ R + P + +L+N ++ + +M I
Sbjct: 221 FSRYDLKYLEDPKGVYG-GDEYIATLARQGLKEDKPGVYTILQNFNWTADDMSAVMLDI- 278
Query: 264 NNKQDRQFVGRTMLRTHPDLLKNWLI 289
+ + + + W+
Sbjct: 279 EGGASEDEAAAAWIEANEETVNGWIS 304
>gi|62183747|gb|AAX73265.1| glycine-betaine binding protein [Methanohalophilus portucalensis
FDF-1]
Length = 299
Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats.
Identities = 61/296 (20%), Positives = 110/296 (37%), Gaps = 19/296 (6%)
Query: 4 ILAVCLFLTTFSISYARD----------ADSCTPVRFADTGWTDIAATTAMTSVILEEIL 53
I+ + L L+ F+ A+ AD W A+T + +LE+
Sbjct: 9 IVGILLVLSLFAAGCAQQGDEGEETDNGADEQKTTSIGYVMWDGEIASTNVMKEVLEQA- 67
Query: 54 GYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
GY+ I + ++ L + D W P + + + VA NL+ K
Sbjct: 68 GYEVEIIAVDAGPLYQGLADGQFDFTTSAWLPQTQANYWEQYGD-QVDRVAVNLEDCKLG 126
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
LAV I S +D+ K++ KI GI+PG Q D+I+ + L
Sbjct: 127 LAVPTYMED--INSIEDLNANKEKFNGKITGIDPGAGIMQNTEDVIDVYGLD---YDLEA 181
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+S S + R+ P V W PH ++ L ++ G + +V T+ R
Sbjct: 182 SSSAGMASALDGAYRDEQPIVVTLWTPHWAFGRYDLKMLDDPQQAYGESD-NVETLARQG 240
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
++ P + ++ ++ +M + D + + +PD + WL
Sbjct: 241 LEEEKPELYAIIGRFNWTHEEIQTVMADM-EGGMDAEEAAAKWVENNPDRVNEWLE 295
>gi|169338028|ref|ZP_02621222.2| glycine betaine-binding protein [Clostridium botulinum C str.
Eklund]
gi|169295457|gb|EDS77590.1| glycine betaine-binding protein [Clostridium botulinum C str.
Eklund]
Length = 305
Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats.
Identities = 58/295 (19%), Positives = 130/295 (44%), Gaps = 12/295 (4%)
Query: 1 MYKILAVCLFLTTFSISYARDAD----SCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
++ I+++ + L+ + ++ S V+ W A+T + +LE+ +GY
Sbjct: 17 LFLIVSIIICLSGCGLLESQIPKTNDRSKGKVKIGYVQWASAEASTYIVKEVLEQ-MGYY 75
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ +L + +++ ID F+ W P + ++ + + +N A+ + V
Sbjct: 76 VELYILQTGILYQATSQGNIDAFVCSWLPDTDTNYWKKHKD-KLVELNDNYTSAQIGIVV 134
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ I + D+ KYK + +I GI+PG + D + + L + L E+S
Sbjct: 135 PNYV---TIDNIADMKKYKDKFKNRIVGIDPGAAQMKVTQDDV-MPHYGLNKWILEESSG 190
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
A ++++R W+PH + S ++ +L + + G GE + T+ R + +
Sbjct: 191 SAMTAELKRAIDKKEWIGVTGWKPHWMWSKWDLKFLKDPDLVMGKGEC-IKTMGRPNIKE 249
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGV 291
+ P ++ + + + + +M I + + V + ++THP+L+K W V
Sbjct: 250 EMPEVASFFQKYRLNTEDFSSVMLEI-QDGESPSLVAKRFVKTHPELVKTWTEKV 303
>gi|315149978|gb|EFT93994.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0012]
Length = 569
Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats.
Identities = 57/275 (20%), Positives = 105/275 (38%), Gaps = 11/275 (4%)
Query: 13 TFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLK 72
+ + + + W A+T + + +L++ +GY L + + S+
Sbjct: 304 GLVGASIFTTTNDKQISLSYVEWDTEVASTHVVAEVLKD-MGYDVKTTPLDNAIMWESVA 362
Query: 73 NKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIA 132
D +G W P ++ + + ENL+GAK + V I
Sbjct: 363 KGETDAMVGAWLPGTHAEQYKQYKD-KLDDLGENLKGAKLGIVVPSYM------DVDSIE 415
Query: 133 KYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIP 192
+ G KI GIEPG +LK + + +S A + + +NN
Sbjct: 416 DLSDQAGKKITGIEPGAGVVAAAEKTKEAYP-NLKDWSVETSSSGAMTVALGQAIKNNED 474
Query: 193 AVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSV 252
V W PH + + ++ YL + G GE +++T+ R + P ++L N ++
Sbjct: 475 IVITGWSPHWMFAKYDLKYLADPKGTMG-GEEAIHTMARQGLKEDQPEAYKVLDNFHWTT 533
Query: 253 ALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
+M I N +D Q R + +H D + W
Sbjct: 534 KDMESVMLEI-NEGKDPQEAARDWVDSHKDQVAEW 567
>gi|315148611|gb|EFT92627.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX4244]
Length = 569
Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats.
Identities = 57/275 (20%), Positives = 105/275 (38%), Gaps = 11/275 (4%)
Query: 13 TFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLK 72
+ + + + W A+T + + +L++ +GY L + + S+
Sbjct: 304 GLVGASIFTTTNDKQISLSYVEWDTEVASTHVVAEVLKD-MGYDVKTTPLDNAIMWESVA 362
Query: 73 NKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIA 132
D +G W P ++ + + ENL+GAK + V I
Sbjct: 363 KGETDAMVGAWLPGTHAEQYKQYKD-KLDDLGENLKGAKLGIVVPSYM------DVDSIE 415
Query: 133 KYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIP 192
+ G KI GIEPG +LK + + +S A + + +NN
Sbjct: 416 DLSDQAGKKITGIEPGAGVVAAAEKTKEAYP-NLKDWSVETSSSGAMTVALGQAIKNNED 474
Query: 193 AVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSV 252
V W PH + + ++ YL + G GE +++T+ R + P ++L N ++
Sbjct: 475 IVITGWSPHWMFAKYDLKYLADPKGTMG-GEEAIHTMARQGLKEDQPEAYKVLDNFHWTT 533
Query: 253 ALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
+M I N +D Q R + +H D + W
Sbjct: 534 KDMESVMLEI-NEGKDPQEAARDWVDSHKDQVAEW 567
>gi|170748908|ref|YP_001755168.1| substrate-binding region of ABC-type glycine betaine transport
system [Methylobacterium radiotolerans JCM 2831]
gi|170655430|gb|ACB24485.1| Substrate-binding region of ABC-type glycine betaine transport
system [Methylobacterium radiotolerans JCM 2831]
Length = 278
Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats.
Identities = 62/283 (21%), Positives = 108/283 (38%), Gaps = 9/283 (3%)
Query: 7 VCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPV 66
L F+++ + + VR A W D A T + +LEE GY LA
Sbjct: 5 TLSVLLCFALTLSPAEAAGKQVRLAYVEWADAVAATTILKQVLEEK-GYTVKTVPLAAAA 63
Query: 67 TFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIK 126
++++ D + W P + L++ ++L+ N+ GAK V +
Sbjct: 64 MWQAVATGDADASVAAWLPVTQAAYHDKLKD-RLELLGPNVTGAKIGWVVP---AFSPLT 119
Query: 127 SYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRD 186
S +D+ E+ K+ GI+PG + I RL++ S+ S ++
Sbjct: 120 SIEDLKTRAAEVDGKVIGIDPGAGVMKSSEAAIKAYGL---PVRLVDGSDATMTSALKNA 176
Query: 187 QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLK 246
R V W PH + + + YL +++ G + SV T+VR D P + +L+
Sbjct: 177 IRQRKDVVVTGWTPHWMFARYELKYLTDPKKVFGE-DESVNTIVRKGLKDDLPEVYTILR 235
Query: 247 NIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
K + E MM + H + +WL
Sbjct: 236 KFKLGIEDEEAMMAQNEERGAKPDETAAKWIAGHRATVDSWLK 278
>gi|171778758|ref|ZP_02919854.1| hypothetical protein STRINF_00706 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171282715|gb|EDT48139.1| hypothetical protein STRINF_00706 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 571
Score = 183 bits (463), Expect = 4e-44, Method: Composition-based stats.
Identities = 57/292 (19%), Positives = 112/292 (38%), Gaps = 16/292 (5%)
Query: 3 KILAVCLFLTTFSISYARDA-----DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
K+LA L + F + S + A W A+T + + +L+ GY+
Sbjct: 291 KLLAPILVILFFVTGITQAVLQTQVTSKQEITLAYVEWDSEVASTNVLAEVLKTK-GYEV 349
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
N+ L VT++++ + D + W P+ + + I+ + NL G AV
Sbjct: 350 NLIPLDNAVTWKAIADGNADASVSAWLPTTHQAQYEQY-KNQIEDLGANLVGTSLGFAVP 408
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
+ I + + I GIEPG + +N+ +L + L +S
Sbjct: 409 SYM------NISSIDELTSQANQTIIGIEPGAGIMSSSENALNSYS-NLNDWSLTSSSTG 461
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDK 237
A + + + +N V +W+PH + + ++ L + I G E ++T+VR +
Sbjct: 462 AMVTSLEQALKNKEDIVVTAWKPHWMFAKYDLVLLEDSQGIFGKSE-EIHTIVRQGLKED 520
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
++ + +M I Q + + +PD ++ WL
Sbjct: 521 QAEAFNIIDKFSWEPEDMQSVMLAIA-EGQSPSQAAKDWIELNPDKVEGWLE 571
>gi|330811095|ref|YP_004355557.1| glycine betaine-binding protein precursor [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|327379203|gb|AEA70553.1| Putative glycine betaine-binding protein precursor [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 284
Score = 183 bits (463), Expect = 4e-44, Method: Composition-based stats.
Identities = 53/289 (18%), Positives = 112/289 (38%), Gaps = 12/289 (4%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNI 59
M ++L L S A++ + W+D ATT + + ++++ LGY +
Sbjct: 3 MRRLLGAGAALVLAISSTLASAET-KTLSIGYVDGWSDSVATTHVAAEVIKQKLGYDVKL 61
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ +A + ++ + +D + W P ++ + N + AK L V +
Sbjct: 62 QAVATGIMWQGVATGKLDAMLSAWLPVTHGDYWTKNKD-QVVDYGPNFKDAKIGLIVPEY 120
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
A ++ K +I GI+ G+ + I + G++L +S
Sbjct: 121 VKAKSLEDL----KTDDSFKKRIVGIDAGSGVMLKTEQAIKDYDL--TGYQLKASSGAGM 174
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+++ R ++ N W PH + + + +L + + G +V ++ + K P
Sbjct: 175 IAELTRAEKKNESIAVTGWVPHWMFAKWKLRFLEDPKGVYG-AAETVNSIGSKELEAKAP 233
Query: 240 NISRLLKNIKFSV-ALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
+ LK ++S E+M I + + + HPD +K W
Sbjct: 234 EVVAFLKKFQWSSKDEIGEVMLAI-QEGAKPEAAAKDWVAKHPDRVKEW 281
>gi|16263404|ref|NP_436197.1| ABC transporter, periplasmic solute-binding protein [Sinorhizobium
meliloti 1021]
gi|14524092|gb|AAK65609.1| ABC transporter, periplasmic solute-binding protein [Sinorhizobium
meliloti 1021]
Length = 333
Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats.
Identities = 50/337 (14%), Positives = 102/337 (30%), Gaps = 39/337 (11%)
Query: 3 KILA-VCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
K+LA C + S++ A+ C V A+ W I + +ILE G I +
Sbjct: 4 KLLAPACFAVGLTSLTQGAFAEECGDVVIANMNWQSIDVLANIDKIILENGYGCSAEITI 63
Query: 62 LAVPVTFRSL-KNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVNDV 119
S+ + DI W +L + ++ + EG + L G +
Sbjct: 64 GDTVSIMTSMIEKGEPDIAPEAWLNALPEIVSRGIAEGKLISAGNALSDGGIQGWYIPKY 123
Query: 120 GFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
+K + + + G + + KGF
Sbjct: 124 IADAHPEIKTVSDALKHPELFPAPEDSSKGAVVNGPSGWGASTTTSQLYKAYDGDAKGFV 183
Query: 171 LI-EASELASFSQIRRDQRNNIPAVFLSWEPHPI-------------------NSDLNIH 210
L+ S I ++ I W P + N
Sbjct: 184 LVDPGSAAGLDGSIVKNYERKIGWFGYYWSPTSLLGKYPMVKLDFDAPHNAAEWKRCNTV 243
Query: 211 YLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQ 270
++ + V T+V ++ ++ LK ++ A N ++ + +N+ +
Sbjct: 244 VDCEDPTVNDWPTDKVETLVTREFKERAGAAMDYLKTRRWDNATLNSLLAWMTDNQATGE 303
Query: 271 FVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
R L +P++ WL + + ++ +
Sbjct: 304 DAARYFLEKNPEIWTKWLS-------PEIAEKVRSSL 333
>gi|323498903|ref|ZP_08103886.1| hypothetical protein VISI1226_07048 [Vibrio sinaloensis DSM 21326]
gi|323316015|gb|EGA69043.1| hypothetical protein VISI1226_07048 [Vibrio sinaloensis DSM 21326]
Length = 329
Score = 182 bits (462), Expect = 5e-44, Method: Composition-based stats.
Identities = 41/334 (12%), Positives = 97/334 (29%), Gaps = 38/334 (11%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
+ L + + A C V AD W + ILE G +
Sbjct: 3 VKTAALLVLSATALNAHAGECGKVTIADMNWNSATVIANIDRFILEHGYGCDAELIPGDT 62
Query: 65 PVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVNDVGFA 122
T ++ D+ W SL+ + + + ++ ++L G + V
Sbjct: 63 MPTGTSMIEKGQPDVAPELWSNSLKDALDKGVADKRLRYAGKSLVDGGEEGFWVPAFLVE 122
Query: 123 LG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI- 172
K Q + + Y G ++ + GF ++
Sbjct: 123 KYPEMATIEGVKKHAQMFEHPEDPDMSAFYSCPAGWNCQISAGNLFKALELDKSGFTIVD 182
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG----------------- 215
S I + W P + + + G
Sbjct: 183 PGSSAGLSGAIAKANERKEAWFGYYWAPTAVLGKYEMVKVDFGSGVDENEFVNCTTQSEC 242
Query: 216 --EEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVG 273
+ + + + V+T+ ++ + P+ F+ A N ++ + +N+ D +
Sbjct: 243 AEPKATMYPPSPVHTITTEEFATRAPDAYDYFSKRGFTNADMNRLLAWMEDNQADGEEAM 302
Query: 274 RTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
L +P + + W+ + + ++++ +
Sbjct: 303 FHFLEDYPQIWQAWVS-------PEVANKVKQAL 329
>gi|289522178|ref|ZP_06439032.1| histidine transporter, periplasmic histidine-binding protein
[Anaerobaculum hydrogeniformans ATCC BAA-1850]
gi|289504014|gb|EFD25178.1| histidine transporter, periplasmic histidine-binding protein
[Anaerobaculum hydrogeniformans ATCC BAA-1850]
Length = 343
Score = 182 bits (462), Expect = 5e-44, Method: Composition-based stats.
Identities = 56/342 (16%), Positives = 107/342 (31%), Gaps = 39/342 (11%)
Query: 1 MYK-----ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M+K ++ + +F S A + F D W + + ILE+ GY
Sbjct: 1 MFKRAITVLIVIVVFSFFLLSSPAISFAKAKNITFGDFSWDSVQIHNRIAGYILEKAYGY 60
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
+ + +D+ M W ++E Y+E G + A
Sbjct: 61 SVSYSFGESLPLLLGMARGDVDVSMEIWSDNIEA-WGKYVESGECLDLGSTYPDAGQGWY 119
Query: 116 VNDVG-----------FALGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILD 157
V A +KS +D+ KY + + Y G + ++
Sbjct: 120 VPTYVIKGDPERGIKPMAPDLKSIEDLPKYWELFKDPENPNKGRFYNGPTGWMISSINME 179
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
+ + S+ A + I R P F WEP PI ++ +
Sbjct: 180 KLKSYGLDKYYQSFEPGSDAALSTAIVSAYRKGEPIFFYYWEPTPILGLFDMTKIEEPPY 239
Query: 218 I-----------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNK 266
F ++ V+ + L K P + L N + ++ NE + + N+
Sbjct: 240 DIKLWNEENGYRCDFPKSKVHVGASAKLLQKDPFVISFLANYEATIEQTNEALAYMWQNE 299
Query: 267 QDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
+ L+ P+ + W G +L+ ++
Sbjct: 300 LRPKDAAIWFLKKFPEQWEQW----FPISGDPHIDKLKEALD 337
>gi|228939908|ref|ZP_04102485.1| Glycine betaine-binding protein [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228972799|ref|ZP_04133398.1| Glycine betaine-binding protein [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228787014|gb|EEM34994.1| Glycine betaine-binding protein [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228819839|gb|EEM65887.1| Glycine betaine-binding protein [Bacillus thuringiensis serovar
berliner ATCC 10792]
Length = 270
Score = 182 bits (462), Expect = 5e-44, Method: Composition-based stats.
Identities = 65/278 (23%), Positives = 119/278 (42%), Gaps = 9/278 (3%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSL 71
F+ A +A+S ++ T W + AT M V+LEE GYK + L + +
Sbjct: 1 MIFTSCNATNANSKGKIKLGVTSWKENIATANMWKVLLEEK-GYKVELMYLEKAAIWTGV 59
Query: 72 KNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDI 131
+D + W P +K + ++ I L ++ +G L V I S +D+
Sbjct: 60 ARGDVDANLEVWLPVTDKPLNDRYKD-DIVLKSKWYEGTGLGLVVPSY--MKNINSIEDL 116
Query: 132 AKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI 191
+K EL KI GIEPG+ + L +L+++SE A S++++
Sbjct: 117 NAHKDELDNKIVGIEPGSSLMNLTNKAMKEYDIKL---KLVQSSEAAMMSELKKAYTKKK 173
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFS 251
P W PH S+ ++ YL +++ G + +Y VR + P++ + K +
Sbjct: 174 PIAVTLWNPHWGFSEFDLKYLKDPKKVYGEKD-DIYYSVRKGFEKDHPDVIKYFDKWKMN 232
Query: 252 VALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+M +LN +D + R ++ + L+ W+
Sbjct: 233 DEQLGTLMV-MLNKTKDPEEAARKWIKKNQALVDEWVK 269
>gi|317121603|ref|YP_004101606.1| substrate-binding region of ABC-type glycine betaine transporter
[Thermaerobacter marianensis DSM 12885]
gi|315591583|gb|ADU50879.1| Substrate-binding region of ABC-type glycine betaine transport
system [Thermaerobacter marianensis DSM 12885]
Length = 313
Score = 182 bits (462), Expect = 5e-44, Method: Composition-based stats.
Identities = 55/272 (20%), Positives = 107/272 (39%), Gaps = 8/272 (2%)
Query: 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDI 78
+ + W + A + + +LEE GY+ + + V F ++ N ID+
Sbjct: 47 GGGSGDKGRIEIGYIPWDEDIAVSYLWKQLLEEK-GYEVTLTQVEVAPLFAAVANGSIDL 105
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL 138
FM W PS + ++++ A LAV D A +S +D+ +Y
Sbjct: 106 FMDVWMPSTHGQYMDRFGD-QVEVLGTWYDQADLGLAVPDYVAA---RSIEDLTQYADRF 161
Query: 139 GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
G +I GIE G + + + L+ + L+++S +++ R +N V W
Sbjct: 162 GKRIVGIEAGAGLMRVTRESA-MPGYGLEDWELVQSSTPTMLAELDRAIQNQEWIVVTLW 220
Query: 199 EPHPINSDLNIHYLPGGEEIS-GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENE 257
PH + +I YL + + G + + R + D ++ L K +
Sbjct: 221 RPHWAFAKYDIRYLDDPQGLMNPEGAEQIQIIAREGFRDDFSEVAAWLGKFKLTSEQLAR 280
Query: 258 MMKLILNNKQD-RQFVGRTMLRTHPDLLKNWL 288
+ I ++ D + + L + D++ WL
Sbjct: 281 LEAAIQDHGADQPEKGVQAWLEENRDVVDAWL 312
>gi|78355722|ref|YP_387171.1| glycine/betaine/L-proline ABC transporter periplasmic-binding
protein [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
gi|78218127|gb|ABB37476.1| glycine/betaine/L-proline ABC transporter, periplasmic-binding
protein [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
Length = 279
Score = 182 bits (461), Expect = 6e-44, Method: Composition-based stats.
Identities = 55/288 (19%), Positives = 109/288 (37%), Gaps = 12/288 (4%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M KIL + + ++ A S V A W A+T + LE+ +GY+ I
Sbjct: 1 MKKILFALML--SLVVATPAWAASKGKVNLAYVEWDCATASTNLAKAALED-MGYEVEIT 57
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ + ++ +D + W P + ++ + + GA+ AV +
Sbjct: 58 PVGAAAMWMAVSTGDMDGMVTAWLPVTHGDYLKKVG-NKVEDLGTIVGGARLGWAVPEYV 116
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
++S ++ + KI GI+PG + ++++ L+E S
Sbjct: 117 ---TVQSIAELNVNADKFDGKIIGIDPGAGLMKLSEEVMDAYGLDKM--ELVEGSGATMT 171
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ + R + V +W PH + + YL + + G E + TVVR+ P
Sbjct: 172 AALSDAIRRDKWVVVTAWSPHWMFGKWKLRYLEDPKGVLGEAE-HINTVVRAGLKADKPE 230
Query: 241 ISRLLKNIKFSV-ALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
+ L N ++ E+M R ++ +P+L+ +W
Sbjct: 231 VYAFLDNFRYDTPEQLQELMAW-NQEGGTPLENARRFMKKYPELVASW 277
>gi|148976133|ref|ZP_01812876.1| hypothetical ABC transporter, substrate binding protein
[Vibrionales bacterium SWAT-3]
gi|145964528|gb|EDK29782.1| hypothetical ABC transporter, substrate binding protein
[Vibrionales bacterium SWAT-3]
Length = 330
Score = 182 bits (461), Expect = 6e-44, Method: Composition-based stats.
Identities = 44/338 (13%), Positives = 98/338 (28%), Gaps = 39/338 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M L+ L + +A +A C V AD W + ILE +
Sbjct: 1 MKYKLSSVFLLVAAASGHA-NAGECGSVTIADMNWNSATLIANIDQFILEHGYDCDAELI 59
Query: 61 LLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVND 118
T ++ D+ W SL+ + +EE ++ + L G + V
Sbjct: 60 PGDTMPTGSSMIEKGQPDVAPELWSNSLKDALDKGVEEKRLRYAGKALVNGGEEGFWVPA 119
Query: 119 VGFALGI---------KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
K+ + + Y G ++ + GF
Sbjct: 120 YLVKQNPEMATIEGVRKNAALFKHPEDPDTSAFYSCPAGWNCQISAANLFDALNLEESGF 179
Query: 170 RLI-EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG------------- 215
++ S I + W P + ++ + G
Sbjct: 180 TIVDPGSSAGLSGSIAKAYEREEAWFGYYWAPTAVLGKYDMVKVDFGSGVDKEEFISCTT 239
Query: 216 ------EEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDR 269
+ + + + V+T+ + + P F+ N ++ + +N+ D
Sbjct: 240 QEGCESPKATMYPPSPVHTITTESFASRAPEAYDYFTKRGFTNEKMNALLAWMEDNQADG 299
Query: 270 QFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ L P++ W+ ++ ++++E +
Sbjct: 300 EEASIHFLSEFPEVWHPWVS-------EEVAKKVEAEL 330
>gi|229544994|ref|ZP_04433719.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, membrane/binding protein
[Enterococcus faecalis TX1322]
gi|229309886|gb|EEN75873.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, membrane/binding protein
[Enterococcus faecalis TX1322]
Length = 569
Score = 182 bits (461), Expect = 7e-44, Method: Composition-based stats.
Identities = 57/264 (21%), Positives = 104/264 (39%), Gaps = 11/264 (4%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYW 83
+ + + W A+T + + +L++ +GY L + + S+ D +G W
Sbjct: 315 NDKQISLSYVEWDTEVASTHVVAEVLKD-MGYDVKTTPLDNAIMWESVAKGETDAMVGAW 373
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIY 143
P ++ + + ENL+GAK + V I + G KI
Sbjct: 374 LPGTHAEQYKQYKD-KLDDLGENLKGAKLGIVVPSYM------DVDSIEDLSDQAGKKIT 426
Query: 144 GIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPI 203
GIEPG +LK + + +S A + + +NN V W PH +
Sbjct: 427 GIEPGAGVVAAAEKTKEAYP-NLKDWSVETSSSGAMTVALGQAIKNNEDIVITGWSPHWM 485
Query: 204 NSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLIL 263
+ ++ YL + G GE +++T+ R + P ++L N ++ +M I
Sbjct: 486 FAKYDLKYLADPKGTMG-GEEAIHTMARQGLKEDQPEAYKVLDNFHWTTKDMESVMLEI- 543
Query: 264 NNKQDRQFVGRTMLRTHPDLLKNW 287
N +D Q R + +H D + W
Sbjct: 544 NEGKDPQEAARDWVDSHKDQVSEW 567
>gi|328949594|ref|YP_004366929.1| ABC-type glycine betaine transport, periplasmic subunit
[Marinithermus hydrothermalis DSM 14884]
gi|328449918|gb|AEB10819.1| ABC-type glycine betaine transport, periplasmic subunit
[Marinithermus hydrothermalis DSM 14884]
Length = 338
Score = 182 bits (461), Expect = 7e-44, Method: Composition-based stats.
Identities = 52/344 (15%), Positives = 109/344 (31%), Gaps = 44/344 (12%)
Query: 1 MYKI-LAVCLFLTTFSISYARDADS--CTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M ++ L + T +++A+ + PV FA W A+ + ILE G +T
Sbjct: 1 MKRVQLGLIALALTLGVAFAQVPECELDRPVVFAGLDWDSARIHNAIAAYILEHGYGCQT 60
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+ + + L +D+ M W ++++ L G + + N A V
Sbjct: 61 DSIPGSTIPLVQGLIRGDLDVMMEVWVDNIKETWDKALATGRVVDLGVNFPDAIQGWFVP 120
Query: 118 DVGFA-----------LGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMI 159
++S QD+ +YK + Y G +
Sbjct: 121 RYVIEGDPERGIAPMAPDLRSVQDLPRYKTLFTDPESPDKGRFYNCILGWACEVINTKKL 180
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPG----- 214
S + A + I P + W P + ++ L
Sbjct: 181 EAYGLSDDYTNFRPGTGAALAAAIASAYERGKPILAYYWGPTWVLGKYDLVMLEEPPFTQ 240
Query: 215 -----------GEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLIL 263
+ + V V D+ D+ P + LK + S L +E++ +
Sbjct: 241 ECWDELNSERRPQTACAYPVIKVTVGVSKDFADQAPTLVEFLKRYETSNQLVSELLAFMQ 300
Query: 264 NNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+N + + L+ + D+ W+ + + +++ +
Sbjct: 301 DNDAEVEEAAIHFLKNYTDVWTQWVP-------AEVAARVQASL 337
>gi|92114889|ref|YP_574817.1| substrate-binding region of ABC-type glycine betaine transport
system [Chromohalobacter salexigens DSM 3043]
gi|91797979|gb|ABE60118.1| Substrate-binding region of ABC-type glycine betaine transport
system [Chromohalobacter salexigens DSM 3043]
Length = 312
Score = 181 bits (460), Expect = 9e-44, Method: Composition-based stats.
Identities = 76/305 (24%), Positives = 154/305 (50%), Gaps = 3/305 (0%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP 65
+ I A A + +RF W I T + S +LE LGY+ + +
Sbjct: 8 LLVGLPLAAGIGMAMPAQAAEQIRFGVPSWPGITVKTEIASQLLE-PLGYQARTDDVGLQ 66
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
V ++ +++ +D+F+G W P+ E + P ++GS+ +A N+ GA+ LAV + + G+
Sbjct: 67 VIYQGMESGDLDVFLGGWLPAQEPMLTPLEDKGSVTRIANNVDGAQMTLAVPEYVYEQGV 126
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
S++D+ ++ +I+G G+ ++ + I+N+ + L ++L++ S + S R
Sbjct: 127 TSFEDLDAHRDMFEGQIHGFGAGSAASEILNKAIDNDTWGLGDWQLVDTSTVGMLSAARD 186
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISR 243
P V++ W PH +N +L + YL + + G G + V T++ +DY + PN++
Sbjct: 187 AISREEPIVWVGWTPHWMNLELPMRYLDDSKNLFGEGNGASQVLTLMSADYAEAHPNLTT 246
Query: 244 LLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQL 303
+N F+ ++ M+K ++++ V T ++ HP+ ++ L GVTT DG +
Sbjct: 247 FFENFTFTAEQQSWMIKAFGLDEKELDSVATTWIQEHPERVEAMLDGVTTTDGDAAWPVV 306
Query: 304 ERFMN 308
+ ++
Sbjct: 307 KEALS 311
>gi|256853947|ref|ZP_05559312.1| glycine betaine/L-proline ABC transporter [Enterococcus faecalis
T8]
gi|307290350|ref|ZP_07570265.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0411]
gi|256710890|gb|EEU25933.1| glycine betaine/L-proline ABC transporter [Enterococcus faecalis
T8]
gi|306498543|gb|EFM68045.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0411]
gi|315030307|gb|EFT42239.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX4000]
Length = 569
Score = 181 bits (460), Expect = 9e-44, Method: Composition-based stats.
Identities = 57/264 (21%), Positives = 104/264 (39%), Gaps = 11/264 (4%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYW 83
+ + + W A+T + + +L++ +GY L + + S+ D +G W
Sbjct: 315 NDKQISLSYVEWDTEVASTHVVAEVLKD-MGYDVKTTPLDNAIMWESVAKGETDAMVGAW 373
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIY 143
P ++ + + ENL+GAK + V I + G KI
Sbjct: 374 LPGTHAEQYKQYKD-KLDDLGENLKGAKLGIVVPSYM------DVDSIEDLSDQAGKKIT 426
Query: 144 GIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPI 203
GIEPG +LK + + +S A + + +NN V W PH +
Sbjct: 427 GIEPGAGVVAAAEKTKEAYP-NLKDWSIETSSSGAMTVALGQAIKNNEDIVITGWSPHWM 485
Query: 204 NSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLIL 263
+ ++ YL + G GE +++T+ R + P ++L N ++ +M I
Sbjct: 486 FAKYDLKYLADPKGTMG-GEEAIHTMARQGLKEDQPEAYKVLDNFHWTTKDMESVMLEI- 543
Query: 264 NNKQDRQFVGRTMLRTHPDLLKNW 287
N +D Q R + +H D + W
Sbjct: 544 NEGKDPQEAARDWVDSHKDQVAEW 567
>gi|256963755|ref|ZP_05567926.1| OpuABC [Enterococcus faecalis HIP11704]
gi|307271702|ref|ZP_07552973.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0855]
gi|256954251|gb|EEU70883.1| OpuABC [Enterococcus faecalis HIP11704]
gi|306511580|gb|EFM80579.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0855]
Length = 569
Score = 181 bits (460), Expect = 9e-44, Method: Composition-based stats.
Identities = 57/264 (21%), Positives = 104/264 (39%), Gaps = 11/264 (4%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYW 83
+ + + W A+T + + +L++ +GY L + + S+ D +G W
Sbjct: 315 NDKQISLSYVEWDTEVASTHVVAEVLKD-MGYDVKTTPLDNAIMWESVAKGETDAMVGAW 373
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIY 143
P ++ + + ENL+GAK + V I + G KI
Sbjct: 374 LPGTHAEQYKQYKD-KLDDLGENLKGAKLGIVVPSYM------DVDSIEDLSDQAGKKIT 426
Query: 144 GIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPI 203
GIEPG +LK + + +S A + + +NN V W PH +
Sbjct: 427 GIEPGAGVVAAAEKTKEAYP-NLKDWSVETSSSGAMTVALGQAIKNNEDIVITGWSPHWM 485
Query: 204 NSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLIL 263
+ ++ YL + G GE +++T+ R + P ++L N ++ +M I
Sbjct: 486 FAKYDLKYLADPKGTMG-GEEAIHTMARQGLKEDQPEAYKVLDNFHWTTKDMESVMLEI- 543
Query: 264 NNKQDRQFVGRTMLRTHPDLLKNW 287
N +D Q R + +H D + W
Sbjct: 544 NEGKDPQEAARDWVDSHKDQVAEW 567
>gi|254505466|ref|ZP_05117613.1| substrate-binding region of ABC-type glycine betaine transport
system [Vibrio parahaemolyticus 16]
gi|219551583|gb|EED28561.1| substrate-binding region of ABC-type glycine betaine transport
system [Vibrio parahaemolyticus 16]
Length = 330
Score = 181 bits (460), Expect = 9e-44, Method: Composition-based stats.
Identities = 44/338 (13%), Positives = 104/338 (30%), Gaps = 39/338 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M ++ L + + + + A C V AD W + ILE G +
Sbjct: 1 MMRVTTAALLVMS-ATALNAQASECGKVTIADMNWNSATVIANIDRFILEHGYGCDAELI 59
Query: 61 LLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVND 118
T ++ D+ W SL+ + + + ++ ++L G + V
Sbjct: 60 PGDTMPTGTSMIEKGQPDVAPELWSNSLKDALDKGVADKRLRYAGKSLVDGGEEGFWVPA 119
Query: 119 VGFA--LGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNNKFSLKGF 169
I + + + K+ K Y G ++ N + GF
Sbjct: 120 ALVEKYPEIATIEGVKKHAKLFEHPEDPDKSAFYSCPAGWNCQISAGNLFNAMELDKAGF 179
Query: 170 RLI-EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--------- 219
++ S I + W P + ++ + G +
Sbjct: 180 AIVDPGSSAGLSGAIAKANERGEAWFGYYWAPTAVLGKYDMVKVDFGSGVDEEEFVNCTT 239
Query: 220 ----------GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDR 269
+ + V+T+ ++ + P F+ A N ++ + +N+ D
Sbjct: 240 QSECANPKPTMYPPSPVHTITTEEFATRAPQAYDYFSKRGFTNADMNRLLAWMEDNQADG 299
Query: 270 QFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ L +P + + W+ + + ++++ +
Sbjct: 300 EEAMFHFLEDYPQIWQAWVS-------PEVANKIKQAL 330
>gi|260756508|ref|ZP_05868856.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
gi|260882328|ref|ZP_05893942.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
gi|260676616|gb|EEX63437.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
gi|260871856|gb|EEX78925.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
Length = 307
Score = 181 bits (460), Expect = 9e-44, Method: Composition-based stats.
Identities = 60/288 (20%), Positives = 109/288 (37%), Gaps = 11/288 (3%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
+ + A A V+ W+D T + ++E+ LG K + V
Sbjct: 27 FGLAAVVAGTMTMGAAFAQDGKTVKIDWAPWSDAEFVTKLARKLIEDNLGQKVELVQTDV 86
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
++ + ID M W P + EG ++ + +GAK V D
Sbjct: 87 APLYQGVSRGDIDAMMMAWLPETHADYYKRV-EGKVENLGPLYEGAKLGWIVPDYIPESE 145
Query: 125 IKSYQDIAKY--KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ S +D+ K +++L +I GI+PG + + I ++L +SE A +
Sbjct: 146 VSSIEDLKKPEVREKLKGEIQGIDPGAGLTRLSQEAIKKYGLD---YKLNISSEAAMLTT 202
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ R R+ V SW PH + + Y+ + G G + V R + + P ++
Sbjct: 203 VDRANRSEGWFVATSWSPHWMFGKYKLRYIADPKGALG-GAEHIDAVARKGFKEDDPKVA 261
Query: 243 RLLKNIKFSVALENEMMKLI-LNNKQDRQFVGRTMLRTHPDLLKNWLI 289
LL + NE+ + + + + HPD +K WL
Sbjct: 262 ALLAKMSIP---INELEAAMFDAQETSYEKAVDKYIADHPDRIKEWLS 306
>gi|29377126|ref|NP_816280.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding/permease protein [Enterococcus
faecalis V583]
gi|227554134|ref|ZP_03984181.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter protein [Enterococcus faecalis
HH22]
gi|229549238|ref|ZP_04437963.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, membrane/binding protein
[Enterococcus faecalis ATCC 29200]
gi|255971952|ref|ZP_05422538.1| glycine betaine/L-proline ABC transporter [Enterococcus faecalis
T1]
gi|255975006|ref|ZP_05425592.1| glycine betaine/L-proline ABC transporter [Enterococcus faecalis
T2]
gi|256616850|ref|ZP_05473696.1| OpuABC [Enterococcus faecalis ATCC 4200]
gi|256763274|ref|ZP_05503854.1| OpuABC [Enterococcus faecalis T3]
gi|256957876|ref|ZP_05562047.1| betaine ABC transporter permease and substrate binding protein
[Enterococcus faecalis DS5]
gi|256961126|ref|ZP_05565297.1| OpuABC [Enterococcus faecalis Merz96]
gi|257079813|ref|ZP_05574174.1| betaine ABC transporter permease and substrate binding protein
[Enterococcus faecalis JH1]
gi|257081841|ref|ZP_05576202.1| glycine betaine/L-proline ABC transporter [Enterococcus faecalis
E1Sol]
gi|257087618|ref|ZP_05581979.1| ABC transporter permease [Enterococcus faecalis D6]
gi|257090777|ref|ZP_05585138.1| ABC glycine betaine/L-proline transporter [Enterococcus faecalis
CH188]
gi|257420040|ref|ZP_05597034.1| ABC betaine transporter permease and substrate binding protein
[Enterococcus faecalis T11]
gi|257421781|ref|ZP_05598771.1| ABC glycine betaine/L-proline transporter [Enterococcus faecalis
X98]
gi|293384072|ref|ZP_06629966.1| glycine betaine/proline ABC transporter, permease/substrate-binding
protein [Enterococcus faecalis R712]
gi|293386886|ref|ZP_06631456.1| glycine betaine/proline ABC transporter, permease/substrate-binding
protein [Enterococcus faecalis S613]
gi|294781364|ref|ZP_06746706.1| ABC transporter, substrate-binding protein, QAT family
[Enterococcus faecalis PC1.1]
gi|300860960|ref|ZP_07107047.1| ABC transporter, substrate-binding protein, QAT family
[Enterococcus faecalis TUSoD Ef11]
gi|307270648|ref|ZP_07551939.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX4248]
gi|307276884|ref|ZP_07557995.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX2134]
gi|307285514|ref|ZP_07565653.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0860]
gi|307287539|ref|ZP_07567582.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0109]
gi|312902408|ref|ZP_07761614.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0635]
gi|312907977|ref|ZP_07766960.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis DAPTO
512]
gi|312953668|ref|ZP_07772505.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0102]
gi|312978495|ref|ZP_07790233.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Enterococcus faecalis DAPTO
516]
gi|29344592|gb|AAO82350.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding/permease protein [Enterococcus
faecalis V583]
gi|227176760|gb|EEI57732.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter protein [Enterococcus faecalis
HH22]
gi|229305475|gb|EEN71471.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, membrane/binding protein
[Enterococcus faecalis ATCC 29200]
gi|255962970|gb|EET95446.1| glycine betaine/L-proline ABC transporter [Enterococcus faecalis
T1]
gi|255967878|gb|EET98500.1| glycine betaine/L-proline ABC transporter [Enterococcus faecalis
T2]
gi|256596377|gb|EEU15553.1| OpuABC [Enterococcus faecalis ATCC 4200]
gi|256684525|gb|EEU24220.1| OpuABC [Enterococcus faecalis T3]
gi|256948372|gb|EEU65004.1| betaine ABC transporter permease and substrate binding protein
[Enterococcus faecalis DS5]
gi|256951622|gb|EEU68254.1| OpuABC [Enterococcus faecalis Merz96]
gi|256987843|gb|EEU75145.1| betaine ABC transporter permease and substrate binding protein
[Enterococcus faecalis JH1]
gi|256989871|gb|EEU77173.1| glycine betaine/L-proline ABC transporter [Enterococcus faecalis
E1Sol]
gi|256995648|gb|EEU82950.1| ABC transporter permease [Enterococcus faecalis D6]
gi|256999589|gb|EEU86109.1| ABC glycine betaine/L-proline transporter [Enterococcus faecalis
CH188]
gi|257161868|gb|EEU91828.1| ABC betaine transporter permease and substrate binding protein
[Enterococcus faecalis T11]
gi|257163605|gb|EEU93565.1| ABC glycine betaine/L-proline transporter [Enterococcus faecalis
X98]
gi|291078552|gb|EFE15916.1| glycine betaine/proline ABC transporter, permease/substrate-binding
protein [Enterococcus faecalis R712]
gi|291083720|gb|EFE20683.1| glycine betaine/proline ABC transporter, permease/substrate-binding
protein [Enterococcus faecalis S613]
gi|294451491|gb|EFG19951.1| ABC transporter, substrate-binding protein, QAT family
[Enterococcus faecalis PC1.1]
gi|295113609|emb|CBL32246.1| ABC-type proline/glycine betaine transport system, permease
component [Enterococcus sp. 7L76]
gi|300849999|gb|EFK77749.1| ABC transporter, substrate-binding protein, QAT family
[Enterococcus faecalis TUSoD Ef11]
gi|306501277|gb|EFM70580.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0109]
gi|306502738|gb|EFM72003.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0860]
gi|306506521|gb|EFM75680.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX2134]
gi|306512958|gb|EFM81599.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX4248]
gi|310626068|gb|EFQ09351.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis DAPTO
512]
gi|310628506|gb|EFQ11789.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0102]
gi|310634078|gb|EFQ17361.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0635]
gi|311288644|gb|EFQ67200.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Enterococcus faecalis DAPTO
516]
gi|315025224|gb|EFT37156.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX2137]
gi|315032769|gb|EFT44701.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0017]
gi|315035772|gb|EFT47704.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0027]
gi|315143732|gb|EFT87748.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX2141]
gi|315151935|gb|EFT95951.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0031]
gi|315155518|gb|EFT99534.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0043]
gi|315159185|gb|EFU03202.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0312]
gi|315162244|gb|EFU06261.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0645]
gi|315164936|gb|EFU08953.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX1302]
gi|315168629|gb|EFU12646.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX1341]
gi|315170114|gb|EFU14131.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX1342]
gi|315173750|gb|EFU17767.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX1346]
gi|315576241|gb|EFU88432.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis
TX0309B]
gi|315579182|gb|EFU91373.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0630]
gi|315582957|gb|EFU95148.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis
TX0309A]
gi|323481572|gb|ADX81011.1| betaine ABC transporter permease and substrate binding protein
[Enterococcus faecalis 62]
gi|327535867|gb|AEA94701.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter [Enterococcus faecalis OG1RF]
gi|329577362|gb|EGG58818.1| ABC transporter, substrate-binding protein, QAT family
[Enterococcus faecalis TX1467]
Length = 569
Score = 181 bits (460), Expect = 9e-44, Method: Composition-based stats.
Identities = 57/264 (21%), Positives = 104/264 (39%), Gaps = 11/264 (4%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYW 83
+ + + W A+T + + +L++ +GY L + + S+ D +G W
Sbjct: 315 NDKQISLSYVEWDTEVASTHVVAEVLKD-MGYDVKTTPLDNAIMWESVAKGETDAMVGAW 373
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIY 143
P ++ + + ENL+GAK + V I + G KI
Sbjct: 374 LPGTHAEQYKQYKD-KLDDLGENLKGAKLGIVVPSYM------DVDSIEDLSDQAGKKIT 426
Query: 144 GIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPI 203
GIEPG +LK + + +S A + + +NN V W PH +
Sbjct: 427 GIEPGAGVVAAAEKTKEAYP-NLKDWSVETSSSGAMTVALGQAIKNNEDIVITGWSPHWM 485
Query: 204 NSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLIL 263
+ ++ YL + G GE +++T+ R + P ++L N ++ +M I
Sbjct: 486 FAKYDLKYLADPKGTMG-GEEAIHTMARQGLKEDQPEAYKVLDNFHWTTKDMESVMLEI- 543
Query: 264 NNKQDRQFVGRTMLRTHPDLLKNW 287
N +D Q R + +H D + W
Sbjct: 544 NEGKDPQEAARDWVDSHKDQVAEW 567
>gi|228959021|ref|ZP_04120722.1| Glycine betaine-binding protein [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228800682|gb|EEM47598.1| Glycine betaine-binding protein [Bacillus thuringiensis serovar
pakistani str. T13001]
Length = 270
Score = 181 bits (460), Expect = 9e-44, Method: Composition-based stats.
Identities = 66/278 (23%), Positives = 118/278 (42%), Gaps = 9/278 (3%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSL 71
F+ A +A+S ++ T W + AT M V+LEE GYK + L + +
Sbjct: 1 MIFTSCNATNANSKGKIKLGVTSWKENIATANMWKVLLEEK-GYKVELMYLEKAAIWTGV 59
Query: 72 KNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDI 131
+D + W P +K + ++ I L ++ +G L V I S +D+
Sbjct: 60 ARGDVDANLEVWLPVTDKPLNNRYKD-DIVLKSKWYEGTGLGLVVPSY--MKNINSIEDL 116
Query: 132 AKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI 191
+K EL KI GIEPG+ + L +L+++SE A S++++
Sbjct: 117 NAHKDELDNKIVGIEPGSSLMNLTNKAMKEYDIKL---KLVQSSEAAMMSELKKAYTKKK 173
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFS 251
P W PH S+ ++ YL +++ G + +Y VR + P+I + K +
Sbjct: 174 PIAVTLWNPHWGFSEFDLKYLKDPKKVYGEKD-DIYYSVRKGFEKDHPDIIKYFDKWKMN 232
Query: 252 VALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+M LN +D + R ++ + L+ W+
Sbjct: 233 DEQLGTLMVE-LNKTKDPEEAARKWIKNNQALVDEWVK 269
>gi|254455893|ref|ZP_05069322.1| ABC proline/glycine betaine transporter, periplasmic
substrate-binding protein [Candidatus Pelagibacter sp.
HTCC7211]
gi|207082895|gb|EDZ60321.1| ABC proline/glycine betaine transporter, periplasmic
substrate-binding protein [Candidatus Pelagibacter sp.
HTCC7211]
Length = 337
Score = 181 bits (460), Expect = 9e-44, Method: Composition-based stats.
Identities = 48/341 (14%), Positives = 106/341 (31%), Gaps = 41/341 (12%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+ KI+ L + F++ +C + A+ W + +ILE+ G + +
Sbjct: 4 IKKIVLSSLAVLGFTLFTGVANAACGKITIANMNWASANFMAEVDKIILEKGYGCEVELV 63
Query: 61 LLAVPVTFRSL-KNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAVND 118
A TF S+ + D+ +W + + +EG + V + G V
Sbjct: 64 PGATMPTFTSMSEKGEPDVAPEFWANAAIVALNKAEDEGKMHSVNKAPITGLGEGWWVLP 123
Query: 119 ---------VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
+K + + PG + KG+
Sbjct: 124 ATLEKHPELTTADAILKRPDLFPHPEDPSKGGFHICPPGWNCELSNRNHFRAWGMEEKGW 183
Query: 170 RLIE-ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG------------- 215
++E S I + W P + N+ + G
Sbjct: 184 MIVETGSAAGLDGSIAKAAERGENWFGYYWSPTALIGKYNMQAVDMGEFGGKDNWDNCLV 243
Query: 216 --------EEISGFGEASVYTVVRSDYLDKCP-NISRLLKNIKFSVALENEMMKLILNNK 266
+ S + ++ V+TV ++ + + L+N + + N M+ + N+
Sbjct: 244 KPEQECANPKKSSWVKSEVFTVTTDNFKKTAGKDGMKYLENRTYPGPVMNGMLVWMGENQ 303
Query: 267 QDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ L+T D+ W+ G + ++++ +
Sbjct: 304 AEGADAAIEFLKTQEDVWTKWVSG-------SAASKIKKAL 337
>gi|257416825|ref|ZP_05593819.1| betaine ABC transporter permease and substrate binding protein
[Enterococcus faecalis AR01/DG]
gi|257158653|gb|EEU88613.1| betaine ABC transporter permease and substrate binding protein
[Enterococcus faecalis ARO1/DG]
Length = 569
Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats.
Identities = 57/264 (21%), Positives = 104/264 (39%), Gaps = 11/264 (4%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYW 83
+ + + W A+T + + +L++ +GY L + + S+ D +G W
Sbjct: 315 NDKQISLSYVEWDTEVASTHVVAEVLKD-MGYDVKTTPLDNAIMWESVAKGETDAMVGAW 373
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIY 143
P ++ + + ENL+GAK + V I + G KI
Sbjct: 374 LPGTHAEQYKQYKD-KLDDLGENLKGAKLGIVVPSYM------DVDTIEDLSDQAGKKIT 426
Query: 144 GIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPI 203
GIEPG +LK + + +S A + + +NN V W PH +
Sbjct: 427 GIEPGAGVVAAAEKTKEAYP-NLKDWSVETSSSGAMTVALGQAIKNNEDIVITGWSPHWM 485
Query: 204 NSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLIL 263
+ ++ YL + G GE +++T+ R + P ++L N ++ +M I
Sbjct: 486 FAKYDLKYLADPKGTMG-GEEAIHTMARQGLKEDQPEAYKVLDNFHWTTKDMESVMLEI- 543
Query: 264 NNKQDRQFVGRTMLRTHPDLLKNW 287
N +D Q R + +H D + W
Sbjct: 544 NEGKDPQEAARDWVDSHKDQVAEW 567
>gi|269964159|ref|ZP_06178456.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269831114|gb|EEZ85276.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 340
Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats.
Identities = 50/338 (14%), Positives = 107/338 (31%), Gaps = 38/338 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M +V L + S A C + AD W + + IL E +
Sbjct: 10 MKTTPSVLSVLLLSAFSAQSYASECGEITIADMNWNSASLMAHIDQFILNEGYQCDAELI 69
Query: 61 LLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVND 118
T ++ D+ W +++ + + + +++ E+L G + V
Sbjct: 70 PGDSVPTGTSMIEKGQPDVAPELWTNGIKEALDKGIADKRLRIAGESLVNGGEEGFWVPS 129
Query: 119 VGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
IK + + + Y G + + + GF
Sbjct: 130 YLVKQYPELATIEGVIKHAKLFEHPEDDEKFAFYSCPAGWTCQITSGHLFDAMELEKYGF 189
Query: 170 RLI-EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG------------- 215
+I S A I + P W P P+ ++ + G
Sbjct: 190 DMIDPGSGAALAGTIAKAYEREKPWFGYYWSPTPVLGKYDMVKVDFGSGTNVEEYRNCTT 249
Query: 216 ------EEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDR 269
++ + + V+TV + +K P L+ F+ ++++ + +N+ D
Sbjct: 250 QPDCESPNVTMYPPSPVHTVTTEAFANKEPQAYAYLQKRGFTNQQMSQLLAWMEDNQADA 309
Query: 270 QFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ T+P+L K W+ D + ++E+ +
Sbjct: 310 EEAMYYFFETYPELWKTWVS-------ADVAAKVEKAI 340
>gi|326692454|ref|ZP_08229459.1| ABC-type proline/glycine betaine transport system, permease
component [Leuconostoc argentinum KCTC 3773]
Length = 568
Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats.
Identities = 61/283 (21%), Positives = 106/283 (37%), Gaps = 11/283 (3%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
+ + + V W A+T + + L + GY + L
Sbjct: 295 TVLVMIAGGAINVMTTQKATGQRVNLGYVEWDSEVASTNVLAESLRQH-GYNVTMTPLDS 353
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
V ++S+ ID + W P K + + + ++ NL+GAK L V D A
Sbjct: 354 AVLWQSVAKGQIDASVSAWLPYTHKVLYNK-FKNDVDMLGPNLRGAKTGLVVPDYMAANS 412
Query: 125 IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
I A + I GIEPG +++ +LKG++L +S A +
Sbjct: 413 I------ADLSNQADKTITGIEPGAGEMASAQKTLDSYD-NLKGWQLQGSSSGAMAIALD 465
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
+ + V W PH + S ++ YL +E G GE ++ T R P + ++
Sbjct: 466 KAYKAKKDIVVTGWSPHWMFSKYHLKYLADPKETMGKGE-NIQTFTRKGLKQDNPKLEKV 524
Query: 245 LKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
L N ++ +M I N + + L+ H L +W
Sbjct: 525 LDNFHWTKDDMESVMLAI-QNGKSPKAAAADWLKAHKKLADSW 566
>gi|227432669|ref|ZP_03914642.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, membrane/binding protein
[Leuconostoc mesenteroides subsp. cremoris ATCC 19254]
gi|227351551|gb|EEJ41804.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, membrane/binding protein
[Leuconostoc mesenteroides subsp. cremoris ATCC 19254]
Length = 573
Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats.
Identities = 63/286 (22%), Positives = 115/286 (40%), Gaps = 13/286 (4%)
Query: 4 ILAVCLFLTTFSI--SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+LA L + + + D + V W A++ + + L + GY +
Sbjct: 297 VLAALLVMIGGGVVNTLTSDKTTGQKVTIGYVEWDSEVASSNVLAESLRQH-GYDVTLTP 355
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
L V ++SL N IDI + W P K + + + L+ NL+G K L V D
Sbjct: 356 LDNAVLWQSLSNNQIDISVSAWLPDTHKALYDKY-KNDVTLLGPNLKGVKTGLVVPDYM- 413
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
I+ + I GIEPG ++ + + +L G+ L +S A S
Sbjct: 414 -----DVNSISDLTTQANKTITGIEPGAGEMATAVNALKSYS-NLSGWNLSSSSSGAMVS 467
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNI 241
+ + +N V W PH + S ++ +L + + G GE ++ T+V + P
Sbjct: 468 ALDKAYKNKQDVVVTGWSPHWMFSKYHLKFLSDPKNVFGSGE-TINTIVNKKFKTSNPKA 526
Query: 242 SRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
++ ++ +M I N Q R+ +++H L+ +W
Sbjct: 527 YKVADKFNWTKDDMESVMLDI-QNGQTRKQAAAKWIKSHQKLVDSW 571
>gi|328542594|ref|YP_004302703.1| Hypothetical amino acid ABC-transporter permease [polymorphum
gilvum SL003B-26A1]
gi|326412340|gb|ADZ69403.1| Hypothetical amino acid ABC-transporter permease protein
[Polymorphum gilvum SL003B-26A1]
Length = 331
Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats.
Identities = 51/338 (15%), Positives = 105/338 (31%), Gaps = 38/338 (11%)
Query: 1 MYK-ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M K +L L +S A A+ C V A+ W A + +ILEE G +
Sbjct: 1 MKKTLLFTTAALMGLGVSSAFAAEDCGRVTLAEMNWASAGAIAHIDKIILEEGYGCTVEL 60
Query: 60 KLLAVPVTFR-SLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVN 117
TF + D+ +W ++ + + +EE + + E L G V
Sbjct: 61 VTGDTMPTFTSMNEKAQPDMAPEFWINAVREPLDQAVEEDRLIIGGEVLSDGGVEGWWVP 120
Query: 118 DVGFALG--------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
+ + + G ++ K +GF
Sbjct: 121 TYLAEEHGLKTVEDALARPDLFPGAEDRSKGAFHNCPSGWGCQINTDNLYRAFKGDERGF 180
Query: 170 RLIE-ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIH------------------ 210
LI+ S I R + W P + ++
Sbjct: 181 ELIDTGSAAGLDGSIARAFERKEGWLGYYWAPTALLGKYDMTRLDFEVEHDKEHWDTCTV 240
Query: 211 -YLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDR 269
+ + + ++ VYT+V ++ DK +K + N+++ + +N+
Sbjct: 241 VADCPDPKPNAWVKSEVYTLVTKEFADKAGVAMDYVKTRSWGNETANKVLAWMSDNQASN 300
Query: 270 QFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ L T P++ W+ + + +++ +
Sbjct: 301 EDGAYWFLETFPEVWTEWVS-------PEVADKVKAAL 331
>gi|209520363|ref|ZP_03269127.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia sp. H160]
gi|209499195|gb|EDZ99286.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia sp. H160]
Length = 285
Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats.
Identities = 61/289 (21%), Positives = 119/289 (41%), Gaps = 11/289 (3%)
Query: 3 KILAVCLFLTTFSISYAR-DADSCTPVRFADT-GWTDIAATTAMTSVILEEILGYKTNIK 60
KI+ + A ADS ++ GW D AT+ + + ++E+ LGY+ +
Sbjct: 6 KIVVASALGAMLAAGSAGVSADSKPTIKIGYVEGWDDSVATSNVAAEVIEKRLGYQVQLV 65
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+A V ++ + +D + W P + + + N AK L V D
Sbjct: 66 PVAAGVMWQGVARGDLDATLSAWLPVTHGAYWN-NFKDKVVDLGPNFNDAKIGLIVPDNV 124
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+KS D+ K E GA+I GI+ G Q+ + I ++L+ +S A
Sbjct: 125 ---DVKSVGDLQAKKAEFGARIVGIDAGAGVMQKTSEAIKAYGLD---YQLMPSSGSAMT 178
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+++ R + + P + W+PH + + + +L +++ G E V +V+ + K P
Sbjct: 179 AELARSEAASKPIIVTGWKPHWMFAKYKLKFLDDPKKVFGEAE-HVDSVINPELEKKAPQ 237
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+ LK ++ + +M N + + H D + +W+
Sbjct: 238 VVAFLKKFQWKPGEIDAVMLA-TQNGEKPPAAADAWISAHSDRVDSWVK 285
>gi|312900011|ref|ZP_07759329.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0470]
gi|311293007|gb|EFQ71563.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0470]
Length = 569
Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats.
Identities = 57/264 (21%), Positives = 104/264 (39%), Gaps = 11/264 (4%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYW 83
+ + + W A+T + + +L++ +GY L + + S+ D +G W
Sbjct: 315 NDKQISLSYVEWDTEVASTHVVAEVLKD-MGYDVKTTPLDNAIMWESVAKGETDAMVGAW 373
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIY 143
P ++ + + ENL+GAK + V I + G KI
Sbjct: 374 LPGTHAEQYKQYKD-KLDDLGENLKGAKLGIVVPSYM------DVDSIEDLSDQAGKKIT 426
Query: 144 GIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPI 203
GIEPG +LK + + +S A + + +NN V W PH +
Sbjct: 427 GIEPGAGVVAAAEKTKEAYP-NLKDWSVETSSSGAMTVALGQAIKNNEDIVITGWSPHWM 485
Query: 204 NSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLIL 263
+ ++ YL + G GE +++T+ R + P ++L N ++ +M I
Sbjct: 486 IAKYDLKYLADPKGTMG-GEEAIHTMARQGLKEDQPEAYKVLDNFHWTTKDMESVMLEI- 543
Query: 264 NNKQDRQFVGRTMLRTHPDLLKNW 287
N +D Q R + +H D + W
Sbjct: 544 NEGKDPQEAARDWVDSHKDQVAEW 567
>gi|254690920|ref|ZP_05154174.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein, hypothetical [Brucella abortus
bv. 6 str. 870]
gi|256256105|ref|ZP_05461641.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein, hypothetical [Brucella abortus
bv. 9 str. C68]
gi|297249462|ref|ZP_06933163.1| glycine betaine/proline transport system substrate-binding protein
[Brucella abortus bv. 5 str. B3196]
gi|297173331|gb|EFH32695.1| glycine betaine/proline transport system substrate-binding protein
[Brucella abortus bv. 5 str. B3196]
Length = 288
Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats.
Identities = 60/288 (20%), Positives = 109/288 (37%), Gaps = 11/288 (3%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
+ + A A V+ W+D T + ++E+ LG K + V
Sbjct: 8 FGLAAVVAGTMTMGAAFAQDGKTVKIDWAPWSDAEFVTKLARKLIEDNLGQKVELVQTDV 67
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
++ + ID M W P + EG ++ + +GAK V D
Sbjct: 68 APLYQGVSRGDIDAMMMAWLPETHADYYKRV-EGKVENLGPLYEGAKLGWIVPDYIPESE 126
Query: 125 IKSYQDIAKY--KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ S +D+ K +++L +I GI+PG + + I ++L +SE A +
Sbjct: 127 VSSIEDLKKPEVREKLKGEIQGIDPGAGLTRLSQEAIKKYGLD---YKLNISSEAAMLTT 183
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ R R+ V SW PH + + Y+ + G G + V R + + P ++
Sbjct: 184 VDRANRSEGWFVATSWSPHWMFGKYKLRYIADPKGALG-GAEHIDAVARKGFKEDDPKVA 242
Query: 243 RLLKNIKFSVALENEMMKLI-LNNKQDRQFVGRTMLRTHPDLLKNWLI 289
LL + NE+ + + + + HPD +K WL
Sbjct: 243 ALLAKMSIP---INELEAAMFDAQETSYEKAVDKYIADHPDRIKEWLS 287
>gi|152975674|ref|YP_001375191.1| substrate-binding region of ABC-type glycine betaine transport
system [Bacillus cereus subsp. cytotoxis NVH 391-98]
gi|152024426|gb|ABS22196.1| Substrate-binding region of ABC-type glycine betaine transport
system [Bacillus cytotoxicus NVH 391-98]
Length = 285
Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats.
Identities = 65/293 (22%), Positives = 126/293 (43%), Gaps = 13/293 (4%)
Query: 1 MYK---ILAVCLFLTTFSISY-ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
M + ++++ LF++ S A +A++ ++ T W + A + V+LE+ GYK
Sbjct: 1 MKRKIWLISILLFISMIITSCNATNANTKGKIKLGVTSWKENIAIANLWKVLLEQK-GYK 59
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
L + + ID + W P +K + + I L A+ +G L V
Sbjct: 60 VEPMYLEKAAIWTGVARGDIDANLEVWLPVTDKPLNN-RYKNDIVLKAKWYEGTGLGLVV 118
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ S +D+ +K+E G KI GIEPG+ + L +L+++SE
Sbjct: 119 PSY--MTDVNSIEDLNAHKEEFGNKIVGIEPGSSLMNLTNKAMKEYDVKL---KLVQSSE 173
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
A S++++ P W PH S+ ++ YL +++ G + +Y VR +
Sbjct: 174 AAMMSELKKAYTQKKPIAVTLWNPHWGFSEFDLKYLKDPKKVYGEKD-DIYYSVRKGFEK 232
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
P++ + K + +M +LN +D + R ++ + L+ W+
Sbjct: 233 DYPDVVKYFDRWKMNDEQLGTLMV-MLNKIKDPEEAARKWIKKNQRLVNEWMK 284
>gi|229018101|ref|ZP_04174976.1| Glycine betaine-binding protein [Bacillus cereus AH1273]
gi|228743192|gb|EEL93317.1| Glycine betaine-binding protein [Bacillus cereus AH1273]
Length = 270
Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats.
Identities = 65/278 (23%), Positives = 118/278 (42%), Gaps = 9/278 (3%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSL 71
F+ A +A+S ++ T W + AT M V+LEE GYK + L + +
Sbjct: 1 MIFTSCNATNANSKGKIKLGVTSWKENIATANMWKVLLEEK-GYKVELMYLEKAAIWTGV 59
Query: 72 KNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDI 131
+D + W P +K + + I L ++ +G L V + S +D+
Sbjct: 60 ARGDVDANLEVWLPVTDKPL-NARYKDDIVLKSKWYEGTGLGLVVPSYV--KNVNSIEDL 116
Query: 132 AKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI 191
+K EL KI GIEPG+ + L +L+++SE A S++++
Sbjct: 117 NAHKDELDNKIVGIEPGSSLMNLTNKAMKEYDIKL---KLVQSSEAAMMSELKKAYTKKK 173
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFS 251
P W PH S+ ++ YL +++ G + +Y VR + P+I + K +
Sbjct: 174 PIAVTLWNPHWGFSEFDLKYLKDPKKVYGEKD-DIYYSVRKGFEKDHPDIVKYFDQWKMN 232
Query: 252 VALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+M +LN +D + R ++ + L+ W+
Sbjct: 233 DEQLGTLMV-MLNKTKDPEEAARKWIKKNQALVDEWIK 269
>gi|92115217|ref|YP_575145.1| substrate-binding region of ABC-type glycine betaine transport
system [Chromohalobacter salexigens DSM 3043]
gi|91798307|gb|ABE60446.1| Substrate-binding region of ABC-type glycine betaine transport
system [Chromohalobacter salexigens DSM 3043]
Length = 286
Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats.
Identities = 50/271 (18%), Positives = 99/271 (36%), Gaps = 9/271 (3%)
Query: 18 YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGID 77
A + A W+ A+T + +LE+ GY+ L+ ++S+ D
Sbjct: 22 STAQAQDKGTINLAYVEWSSTVASTNVMRAVLEQA-GYEVETSSLSAAAMWQSVATGDTD 80
Query: 78 IFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKE 137
+ W P+ + + + NL G K L V + S D+ + +
Sbjct: 81 ALLAGWLPTTHEDYY-AQLKDQLVDTGVNLDGTKLGLVVPAYS---EVDSIADLNAHADD 136
Query: 138 LGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLS 197
K+ GI+PG + +I L L S + ++ N+
Sbjct: 137 FDNKLTGIDPGAGIMRLTDKVIEEYDLDL---SLQSGSGATMTAALKSAIANDEEIAVTG 193
Query: 198 WEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENE 257
W PH + + ++ YL + + G G ++T+VR + P +L +++ E
Sbjct: 194 WTPHWMFARWDLKYLDDPKNVYG-GAEQIHTIVRQGLKEDMPEAYAILDAFEWTAEDMGE 252
Query: 258 MMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+M + D + + + L++ WL
Sbjct: 253 VMLMNQEEDSDPYENAKQWVEDNQALVQEWL 283
>gi|297195393|ref|ZP_06912791.1| glycine betaine ABC transport system permease [Streptomyces
pristinaespiralis ATCC 25486]
gi|197719237|gb|EDY63145.1| glycine betaine ABC transport system permease [Streptomyces
pristinaespiralis ATCC 25486]
Length = 874
Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats.
Identities = 55/294 (18%), Positives = 103/294 (35%), Gaps = 15/294 (5%)
Query: 4 ILAVCLFLTTFSISYARDAD---------SCTPVRFADTGWTDIAATTAMTSVILEEILG 54
I+ + L + +D V W + A+T + +LE+ G
Sbjct: 307 IVVLALVAGGMGMFSGAKSDTAAGASRIGDGKKVSIGYIPWDEGIASTFLWKELLEQR-G 365
Query: 55 YKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
++ + K L + L ID W P + ++ + L
Sbjct: 366 FEVDTKQLEAGSLYTGLAGGQIDFQTDAWLPVTHASYMEKYGD-KLEDLGSWYGPTSLEL 424
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
+V G+ S +D+ E +I GIEP + D + + +++++
Sbjct: 425 SVPSY--MKGVDSLEDLKGRSAEFKGRIVGIEPSAGMMGILKDKVLKDYGLEGEYKVVDG 482
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDY 234
S ++++R P V W PH S ++ L + G G+ V+T+ R +
Sbjct: 483 STPGMLAELKRAYDKKEPIVTTLWSPHWAYSTYDLKKLKDPKGSWGKGDG-VHTLARKGF 541
Query: 235 LDKCPNISRLLKNIKFSVALENEMMKLILNNKQ-DRQFVGRTMLRTHPDLLKNW 287
+ P + LKN K + + I + + Q R L +P L W
Sbjct: 542 SAEYPEVGAWLKNFKMTEEQLTGLEAKIQDTGKGKEQEAVRAWLGDNPGLADTW 595
Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats.
Identities = 53/265 (20%), Positives = 105/265 (39%), Gaps = 6/265 (2%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGY 82
+ P+ A W + A T + +LEE GY N+K V + +L ID+
Sbjct: 611 ERDRPLNVAWFPWEEDIAATYLWKAVLEER-GYTMNLKQFEVGPMYTALSRGQIDVQFDG 669
Query: 83 WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKI 142
W P+ +K + + + LAV G+ S D+ + +I
Sbjct: 670 WLPTTQKKYWDEYGD-KLTDLGSWYGPTSLELAVPSYVD--GVDSLADLKGRGDDFKGRI 726
Query: 143 YGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP 202
GIEPG E + + + + F ++++S ++++R P + W PH
Sbjct: 727 VGIEPGTETMNILKNKVLPDYGLEDEFEVVDSSTPGMLAELKRAYAKKEPIAVMLWTPHW 786
Query: 203 INSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI 262
S+ ++ L ++ G G+ ++TV D+ + P +++ K+ K S + I
Sbjct: 787 AYSEYDLTKLADPKKSFGEGD-EIHTVASKDFPKQYPRLTKWFKDFKLSEKQLAGLENEI 845
Query: 263 LNNKQD-RQFVGRTMLRTHPDLLKN 286
+ + + + T+P +
Sbjct: 846 QKHGTGHEEEAVKAWMETNPGIADE 870
>gi|257084383|ref|ZP_05578744.1| amino acid ABC transporter, permease [Enterococcus faecalis Fly1]
gi|256992413|gb|EEU79715.1| amino acid ABC transporter, permease [Enterococcus faecalis Fly1]
Length = 569
Score = 181 bits (458), Expect = 2e-43, Method: Composition-based stats.
Identities = 56/264 (21%), Positives = 104/264 (39%), Gaps = 11/264 (4%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYW 83
+ + + W A+T + + +L++ +GY L + + S+ D +G W
Sbjct: 315 NDKQISLSYVEWDTEVASTHVVAEVLKD-MGYDVKTTPLDNAIMWESVAKGETDAMVGAW 373
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIY 143
P ++ + + ENL+GAK + V I + G KI
Sbjct: 374 LPGTHAEQYKQYKD-KLDDLGENLKGAKLGIVVPSYM------DVDSIEDLSDQAGKKIT 426
Query: 144 GIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPI 203
GIEPG +LK + + +S A + + +NN + W PH +
Sbjct: 427 GIEPGAGVVAAAEKTKEAYP-NLKDWSVETSSSGAMTVALGQAIKNNEDIIITGWSPHWM 485
Query: 204 NSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLIL 263
+ ++ YL + G GE +++T+ R + P ++L N ++ +M I
Sbjct: 486 FAKYDLKYLADPKGTMG-GEEAIHTMARQGLKEDQPEAYKVLDNFHWTTKDMESVMLEI- 543
Query: 264 NNKQDRQFVGRTMLRTHPDLLKNW 287
N +D Q R + +H D + W
Sbjct: 544 NEGKDPQEAARDWVDSHKDQVAEW 567
>gi|229012046|ref|ZP_04169225.1| Glycine betaine-binding protein [Bacillus mycoides DSM 2048]
gi|229133676|ref|ZP_04262502.1| Glycine betaine-binding protein [Bacillus cereus BDRD-ST196]
gi|229167386|ref|ZP_04295124.1| Glycine betaine-binding protein [Bacillus cereus AH621]
gi|228615948|gb|EEK73035.1| Glycine betaine-binding protein [Bacillus cereus AH621]
gi|228649711|gb|EEL05720.1| Glycine betaine-binding protein [Bacillus cereus BDRD-ST196]
gi|228749134|gb|EEL98980.1| Glycine betaine-binding protein [Bacillus mycoides DSM 2048]
Length = 270
Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats.
Identities = 64/278 (23%), Positives = 117/278 (42%), Gaps = 9/278 (3%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSL 71
F+ A +A+S ++ T W + AT M V+LEE GYK + L + +
Sbjct: 1 MIFTSCNATNANSKGKIKLGVTSWKENIATANMWKVLLEEK-GYKVELMYLEKAAIWTGV 59
Query: 72 KNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDI 131
+D + W P +K + + L ++ +G L V + S +D+
Sbjct: 60 ARGDVDANLEVWLPVTDKPL-NARYKDDFVLKSKWYEGTGLGLVVPSYV--KNVNSIEDL 116
Query: 132 AKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI 191
+K EL KI GIEPG+ + L +L+++SE A S++++
Sbjct: 117 NAHKDELDNKIVGIEPGSSLMNLTNKAMKEYDIKL---KLVQSSEAAMMSELKKAYTKKK 173
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFS 251
P W PH S+ ++ YL +++ G + +Y VR + P+I + K +
Sbjct: 174 PIAVTLWNPHWGFSEFDLKYLKDPKKVYGEKD-DIYYSVRKGFEKDHPDIVKYFDQWKMN 232
Query: 252 VALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+M +LN +D + R ++ + L+ W+
Sbjct: 233 DEQLGTLMV-MLNKTKDPEEAARKWIKKNQALVDEWIK 269
>gi|212693215|ref|ZP_03301343.1| hypothetical protein BACDOR_02725 [Bacteroides dorei DSM 17855]
gi|237709958|ref|ZP_04540439.1| glycine betaine-binding protein [Bacteroides sp. 9_1_42FAA]
gi|265753609|ref|ZP_06088964.1| glycine betaine-binding protein [Bacteroides sp. 3_1_33FAA]
gi|212664320|gb|EEB24892.1| hypothetical protein BACDOR_02725 [Bacteroides dorei DSM 17855]
gi|229456051|gb|EEO61772.1| glycine betaine-binding protein [Bacteroides sp. 9_1_42FAA]
gi|263235323|gb|EEZ20847.1| glycine betaine-binding protein [Bacteroides sp. 3_1_33FAA]
Length = 280
Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats.
Identities = 55/288 (19%), Positives = 117/288 (40%), Gaps = 11/288 (3%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M KIL ++ + W D A T +T VILE+ GY +K
Sbjct: 1 MKKILYFL--SFLLLLTSCSGKKDDKTISIGYINWDDGIALTYLTEVILEQQ-GYHVILK 57
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ ++ +D+ M W P+ + + +++++ + A+ L V D
Sbjct: 58 NADPAPIYATMARGKVDLLMDAWLPATQADYMKQYGK-NLEILGKIYPDARIGLVVPDYV 116
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
I S + K++ G +I GI+ G I ++L+E+S A
Sbjct: 117 ---DIHSIDQLNANKEKFGGEIIGIDAGAGIMHAADMAIEKYNLD---YKLLESSGPAMT 170
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ ++R + V W PH + + + +L + I G E ++ + + ++ P
Sbjct: 171 AVLKRAIDEHQWIVVTGWTPHWMFTRFKLKFLEDPKGIFGKAE-TITAIACKGFGEQHPF 229
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+ +L++NI S + ++ + N+ + + ++ H +L+ +W+
Sbjct: 230 VVKLIENIHLSTEEISSLLDDVSQNEYNEKEGAEKWVKEHQELVDSWI 277
>gi|258614687|ref|ZP_05712457.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding/permease protein [Enterococcus
faecium DO]
Length = 560
Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats.
Identities = 61/269 (22%), Positives = 107/269 (39%), Gaps = 11/269 (4%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP 65
V + L I A + + W A+T + +L++ +GY + L
Sbjct: 303 VVVVILGAIGIGSFSSAKETKRINLSYVEWDTEVASTNVVGEVLKQ-MGYDVTMTPLDNS 361
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
+ ++S+ N D + W P + ++ + NL GAK LAV
Sbjct: 362 IMWKSVSNGESDAMVSAWLPKTHGS-QYAQYKDQVEDLGANLTGAKVGLAVPAYM----- 415
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
I + + G KI GIEPG + I +LK +++ +S A + +
Sbjct: 416 -DVNSIDELTDQAGKKIIGIEPGAGVVTAAENTIQKYD-NLKDWKVETSSSGAMTVALGQ 473
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
+ + P V W PH + + ++ YL E G E ++T+VR + P ++L
Sbjct: 474 AIKKHEPIVVTGWTPHWMFAKYDLKYLEDPENGMGS-EEQIHTMVRKGLKEDQPEAYKVL 532
Query: 246 KNIKFSVALENEMMKLILNNKQDRQFVGR 274
N +S ++M I NN +D Q +
Sbjct: 533 DNFHWSEKDMEKVMLEI-NNGKDPQQAAK 560
>gi|262273944|ref|ZP_06051756.1| hypothetical ABC transporter substrate binding protein [Grimontia
hollisae CIP 101886]
gi|262221754|gb|EEY73067.1| hypothetical ABC transporter substrate binding protein [Grimontia
hollisae CIP 101886]
Length = 330
Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats.
Identities = 52/321 (16%), Positives = 101/321 (31%), Gaps = 38/321 (11%)
Query: 18 YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVT-FRSLKNKGI 76
A A C V AD W + + +IL E G + T ++
Sbjct: 17 MAGVAAECGKVTIADMNWNSASLIANVDRIILAEGYGCDAELVPGDTMPTGTSMIEKGEP 76
Query: 77 DIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVNDVGFALG---------IK 126
DI +W +L+ + +E+G ++ L G + V +
Sbjct: 77 DIAPEFWSNTLKAALDRGVEDGRLRYAGAVLSDGGEEGFWVPKYLVEKNPSLATIEGIVA 136
Query: 127 SYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI-EASELASFSQIRR 185
+ + + + +G G ++ N K KGF LI S I +
Sbjct: 137 NRKLFEHPEDPSKSAFFGCPAGWNCQISSGNLFNALKLENKGFELIDPGSGAGLSGSIAK 196
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGG-------------------EEISGFGEASV 226
W P + + + G +++ + ++V
Sbjct: 197 AYERGEGWFGYYWAPTAVLGKYEMVKVDFGSGIDKEHFETCTTNPDCLEPKVTMYPPSAV 256
Query: 227 YTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKN 286
TV+ + P L N F+ A N ++ + NN+ D + L H D+
Sbjct: 257 DTVITESFAQNAPKAVSYLSNRSFTNAQLNRLLAWMENNQADGEIAAMYFLENHEDIWGG 316
Query: 287 WLIGVTTFDGQDPSRQLERFM 307
W+ D +++++ +
Sbjct: 317 WVT-------PDVAKKIKSAL 330
>gi|77457833|ref|YP_347338.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas fluorescens Pf0-1]
gi|77381836|gb|ABA73349.1| putative glycine betaine-binding protein precursor [Pseudomonas
fluorescens Pf0-1]
Length = 283
Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats.
Identities = 52/291 (17%), Positives = 112/291 (38%), Gaps = 12/291 (4%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNI 59
M ++L L S A+ + W+D ATT + + ++++ LGY +
Sbjct: 3 MRRLLGAGAALVLAMSSTFASAE-KQTLNIGYVDGWSDSVATTHVAAEVIKQKLGYDVKL 61
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ +A + ++ + +D + W P ++ + N + AK L V +
Sbjct: 62 QAVATGIMWQGVATGKLDAMLSAWLPVTHGEYWTKNKD-QVVDYGPNFKDAKIGLIVPEY 120
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
A I+ K +I GI+ G+ + I + + L +S
Sbjct: 121 VKAKTIEDL----KTDDSFKNRIVGIDAGSGVMLKTDQAIKDYGLDK--YTLKASSGAGM 174
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+++ R ++ N W PH + + + +L + + G +V ++ + K P
Sbjct: 175 IAELTRAEKKNESIAVTGWVPHWMFAKWKLRFLDDPKGVYG-AAETVNSIGSKELATKAP 233
Query: 240 NISRLLKNIKF-SVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+++ LKN ++ S E+M I + + + HP+ + +W
Sbjct: 234 EVAKFLKNFQWASKDEIGEVMLAI-QDGAKPDAAAKDWVAKHPERVADWTK 283
>gi|224370866|ref|YP_002605030.1| ProX [Desulfobacterium autotrophicum HRM2]
gi|223693583|gb|ACN16866.1| ProX [Desulfobacterium autotrophicum HRM2]
Length = 334
Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats.
Identities = 52/328 (15%), Positives = 100/328 (30%), Gaps = 34/328 (10%)
Query: 8 CLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVT 67
L + + + FAD W + + ILE Y
Sbjct: 13 VLIMGLILTLALPASGLARRIVFADLSWDSVQVHNQIAGFILEHGYDYDVEYMPGETIPL 72
Query: 68 FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA----- 122
F L +D+ M W ++++ +++ I + N + V
Sbjct: 73 FTGLMRGNVDVNMESWTENIQEVYDKAMKQKKIMDLGSNFPDSWQGWLVPTYMIKGDPSR 132
Query: 123 ------LGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNNKFSLKGF 169
+KS D+ +Y + + Y G + +
Sbjct: 133 GIEPVAPDLKSVTDLPRYWELFKDPEEPSKGRFYNSIAGWKVTDINSQKLKAYGLDTYYS 192
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG---------EEISG 220
I S+ A + P V W P + ++ L +
Sbjct: 193 DFIPGSDAALSGSMASAHAKGRPWVGYYWGPTWVLGKYDMTPLEEPAFDQKVWDETKGCA 252
Query: 221 FGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
V +V + + K P +LK + S+AL NE++ + +NK Q L+ H
Sbjct: 253 MPSVQVNILVNAKFAKKNPEAVAVLKEYETSMALCNELLAYMRDNKAGTQAAALFFLKKH 312
Query: 281 PDLLKNWLIGVTTFDGQDPSRQLERFMN 308
+L +NW+ + + ++E +N
Sbjct: 313 KELWENWVT-------PEAAGKIEAALN 333
>gi|300172857|ref|YP_003772022.1| OpuABC protein [Leuconostoc gasicomitatum LMG 18811]
gi|299887235|emb|CBL91203.1| OpuABC [Leuconostoc gasicomitatum LMG 18811]
Length = 568
Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats.
Identities = 66/286 (23%), Positives = 107/286 (37%), Gaps = 13/286 (4%)
Query: 4 ILAVCLFLTTFSISYA--RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
ILA L + + A S V W A+T + + L + GY +
Sbjct: 292 ILATALIMIGGGVVNAVTSQKSSGQKVNLGYVSWDSEVASTNVLAESLRQH-GYDVTMTP 350
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
L V ++SL N +D + W P K + + I L+ NL GAK V D
Sbjct: 351 LDNAVLWQSLANGQVDASVSAWLPYTHKALYDRY-KNDISLLGPNLHGAKTGFVVPDYMK 409
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
IA E + GIEPG +++ +LKG+ L+ AS A +
Sbjct: 410 ------VNSIADLTNEANKTVTGIEPGAGEMITAQKTLDSYS-NLKGWNLLSASSGAMAT 462
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNI 241
+ + + V W PH + S + YL + G E+ + T+ R D P
Sbjct: 463 ALDKAYKTKQDIVVTGWSPHWMFSKYKLKYLQDPKGTMGKNES-INTITRKDLKKDNPKF 521
Query: 242 SRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
+++ ++ +M I N + L++H L +W
Sbjct: 522 EKVMDKFNWTKEDMESVMLDI-QNGAKPKQAATKWLKSHQKLADSW 566
>gi|262275224|ref|ZP_06053034.1| putative periplasmic substrate-binding protein [Grimontia hollisae
CIP 101886]
gi|262220469|gb|EEY71784.1| putative periplasmic substrate-binding protein [Grimontia hollisae
CIP 101886]
Length = 328
Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats.
Identities = 47/328 (14%), Positives = 98/328 (29%), Gaps = 38/328 (11%)
Query: 11 LTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVT-FR 69
L ++S AD C V AD W + IL G + T
Sbjct: 8 LALLALSPFTFADECGDVTIADMNWNSATLMAHVDQFILTHGFGCNAELVPGDTMPTGVS 67
Query: 70 SLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVNDVGFALGIK-- 126
+ DI +W S ++ + ++E ++ + +G + V +
Sbjct: 68 MTEKGEPDIAPEFWSNSHKEMLQKGVDEKKLRFAGKAFVEGGEEGFWVPKYMIDKHPELA 127
Query: 127 -------SYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI-EASELA 178
+ + + + G + N GF +I S A
Sbjct: 128 TIEGIKANANLFPHPEDDSKSGFMTCPAGWTCQITAGHLFNALGLEEAGFEMIDPGSGAA 187
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISG------------------ 220
I R W P P+ + + G +
Sbjct: 188 LAGSIARANDRENAWFGYYWSPTPVLGRYEMVKVDFGVDADPEHYENCITQADCINPKVT 247
Query: 221 -FGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+ ++V T+ + K P + + N ++ A + MM + N+ D + L +
Sbjct: 248 AYPPSAVNTITTESFATKSPAAYKYISNRAYTNADMSAMMAWMEENQADGEIAAFEFLES 307
Query: 280 HPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+P + W+ +D +++++ +
Sbjct: 308 YPHVWMKWVS-------EDAAKKVKAAL 328
>gi|237725377|ref|ZP_04555858.1| glycine betaine-binding protein [Bacteroides sp. D4]
gi|229436064|gb|EEO46141.1| glycine betaine-binding protein [Bacteroides dorei 5_1_36/D4]
Length = 280
Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats.
Identities = 55/288 (19%), Positives = 118/288 (40%), Gaps = 11/288 (3%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M KIL ++ + W D A T +T VILE+ GY +K
Sbjct: 1 MKKILYFL--SFLLLLTSCSGKKDDKTISIGYINWDDGIALTYLTEVILEQQ-GYHVILK 57
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ ++ +D+ M W P+ + + +++++ + A+ L V D
Sbjct: 58 NADPAPIYATMARGKVDLLMDAWLPATQADYMKQYGK-NLEILGKIYPDARIGLVVPDYV 116
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
I S + K++ G +I GI+ G I + ++L+E+S A
Sbjct: 117 ---DIHSIDQLNANKEKFGGEIIGIDAGAGIMHAADMAIEKYNLN---YKLLESSGPAMT 170
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ ++R + V W PH + + + +L + I G E ++ + + ++ P
Sbjct: 171 AVLKRAIDEHQWIVVTGWTPHWMFTRFKLKFLEDPKGIFGKAE-TITAIACKGFGEQHPF 229
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+ +L++NI S + ++ + N+ + + ++ H +L+ +W+
Sbjct: 230 VVKLIENIHLSTEEISSLLDDVSQNEYNEKEGAEKWVKEHQELVDSWI 277
>gi|312865610|ref|ZP_07725835.1| ABC transporter, substrate-binding protein, QAT family
[Streptococcus downei F0415]
gi|311098878|gb|EFQ57097.1| ABC transporter, substrate-binding protein, QAT family
[Streptococcus downei F0415]
Length = 575
Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats.
Identities = 60/290 (20%), Positives = 115/290 (39%), Gaps = 15/290 (5%)
Query: 3 KILAVCLFLTTFSISYARD-----ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
K LA L L + + V A W A+T + + L++ GY
Sbjct: 294 KWLAPALILAFLATGITQAVVSHTGSHKEKVTLAYVEWDSEVASTNVLAEALKQE-GYDV 352
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+IK L V ++S+ + +D + W P+ K +G + + NL+G K LAV
Sbjct: 353 DIKPLDNAVAWKSVADGSVDASVSAWLPATHKAQYDKY-KGQLDDLGVNLKGTKLGLAVP 411
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
K I + + I GIEPG +L +++ +S
Sbjct: 412 SYM-----KGVNSIEDLSDQADSTITGIEPGAGIMSGAEKAQKEYS-NLSSWKVSSSSTG 465
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDK 237
A + + + +N V +W+PH + + ++ +L + + G E +++T+ + D+
Sbjct: 466 AMTTSLEQAIKNKDEIVITAWKPHWMFAKYDLKFLKDPKGVFGKSE-NIHTIAKKGLKDE 524
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
P +L+ N +S + +M I N + + ++ H + W
Sbjct: 525 NPGAYKLINNFHWSSSDMESVMLDI-NKGTSPEKAAQKWIKNHKSQVAEW 573
>gi|118588254|ref|ZP_01545663.1| ABC proline/glycine betaine transporter, periplasmic
substrate-binding protein [Stappia aggregata IAM 12614]
gi|118438960|gb|EAV45592.1| ABC proline/glycine betaine transporter, periplasmic
substrate-binding protein [Stappia aggregata IAM 12614]
Length = 330
Score = 180 bits (456), Expect = 3e-43, Method: Composition-based stats.
Identities = 44/337 (13%), Positives = 100/337 (29%), Gaps = 37/337 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K+ ++ + A+ C V A+ W A + +ILE G +
Sbjct: 1 MKKLFVSVAATALIGMASSAMAEECGTVTVAEMNWASAGAIAQIDKIILENGYGCTVELV 60
Query: 61 LLAVPVTFR-SLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVND 118
TF + D+ W ++ + + + EGS+ + E L +G V
Sbjct: 61 SGDTMPTFTSMNEKGEPDMAPELWINAVREPLDKAVAEGSLIIGGEILNEGGVEGFWVPT 120
Query: 119 VGFALG--------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
+ + + E + G ++ F GF
Sbjct: 121 YLAEEHNIYTVKDALAHPELFPGAEDESKGAFFSCPAGWNCRITTGNLFRAFGFDKGGFE 180
Query: 171 LI-EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIH------------------- 210
L+ S + + + W P I ++
Sbjct: 181 LVDPGSAAGLDGALAKANERKEGWLGYYWAPTAILGKYDMTLLDFEVPHDKEEWDTCTVI 240
Query: 211 YLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQ 270
+ + + ++ V+TVV D+ +K +K + +++ + +N+ +
Sbjct: 241 EDCPEPKPNSWVKSEVFTVVTDDFANKAGPAMDYIKGRTWDNRTAGKVLAWMTDNQAANE 300
Query: 271 FVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
L D+ W+ + + +++ +
Sbjct: 301 DGAYYFLENFEDVWTQWVS-------PEVAEKVKAAL 330
>gi|332716767|ref|YP_004444233.1| glycine betaine ABC transporter, substrate binding protein
[Agrobacterium sp. H13-3]
gi|325063452|gb|ADY67142.1| glycine betaine ABC transporter, substrate binding protein
[Agrobacterium sp. H13-3]
Length = 332
Score = 180 bits (456), Expect = 3e-43, Method: Composition-based stats.
Identities = 48/339 (14%), Positives = 99/339 (29%), Gaps = 39/339 (11%)
Query: 1 MYKILAVCLFLTTFSI-SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M +L + F++ A A C V A W + +ILE+ G I
Sbjct: 1 MKILLGATILSAGFALTGGAAFAADCGNVTIASMNWQSAEVAANLDKIILEKGYGCSAEI 60
Query: 60 KLLAVPVTFRSL-KNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVN 117
T S+ + DI W + + LE G + A+ L GA +
Sbjct: 61 VTGDTVPTLTSMAEKGQPDIAPEAWVSLQPEIVKQGLEGGKVVAAAKILSDGAVQGWWIP 120
Query: 118 DVGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
K + + + ++ G G + G
Sbjct: 121 KYVADANPDLKTIPDLFKHPELFPSPEDKAKGAVFNGPQGWGGTVVTAQLFKAFGGEKAG 180
Query: 169 FRLIE-ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIH----------------- 210
F L++ S + + P V W P + +
Sbjct: 181 FTLVDTGSAAGLDGSVAKAYEAKQPWVGYYWAPTSLLGKYEMVKLGFGTEYDSAEWKRCT 240
Query: 211 --YLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQD 268
+ + + V T+V + D+ L ++ N+++ + +N+
Sbjct: 241 SVADCADPKPNAWQVDDVQTLVSKTFADRAGPAMDYLNKRAWTNDTVNKLIAWMTDNQAT 300
Query: 269 RQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ + L+ + L W+ D +++++ +
Sbjct: 301 GEDGAKHFLKENEALWTGWVS-------PDVAQKVKAAL 332
>gi|84686550|ref|ZP_01014443.1| ABC proline/glycine betaine transporter, periplasmic
substrate-binding protein [Maritimibacter alkaliphilus
HTCC2654]
gi|84665463|gb|EAQ11940.1| ABC proline/glycine betaine transporter, periplasmic
substrate-binding protein [Rhodobacterales bacterium
HTCC2654]
Length = 336
Score = 180 bits (455), Expect = 3e-43, Method: Composition-based stats.
Identities = 55/340 (16%), Positives = 103/340 (30%), Gaps = 42/340 (12%)
Query: 3 KILAVCLFLTTFSI-SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
K L V L A A C V A+ W + ++ILEE G ++
Sbjct: 4 KTLGVLGALGISVCFGSAAFAQECGDVSIAEMDWASAELMANVDAIILEEGYGCDVSLIP 63
Query: 62 LAVPVTF-RSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAEN-LQGAKYMLAVNDV 119
A TF + D+ W ++ ++ EEGS+ + + + G V
Sbjct: 64 GATTTTFASMSEKAEPDVAPELWINAVRDPLSAAKEEGSLVALNDGPITGLGEGWWVTPA 123
Query: 120 GFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
++ + E G G ++ KG+
Sbjct: 124 FAEEHPELDTVEKLLERPDLFPYAEDESKGAFVGCPAGWGCQLVNANLFRAFDMEEKGWV 183
Query: 171 LI-EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHY------------------ 211
L+ S + + P W P + N+
Sbjct: 184 LVDPGSAAGLDGSMAKAADRGEPWFGYYWSPTSMIGKYNMVMLPFEAEFAGRENWDGCIA 243
Query: 212 ----LPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQ 267
+ + + + V TVV D+++K + K F + N M+ + N+
Sbjct: 244 LAEQDCQDPQPTAWTVSEVETVVTDDFMEKGGVAADYFKARVFPGDVMNAMLVFMNENQA 303
Query: 268 DRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ L TH D+ W+ G+D + +++ +
Sbjct: 304 TGEDAAFEFLMTHEDIWTQWV-------GEDVAAKVKDAL 336
>gi|298674765|ref|YP_003726515.1| glycine betaine ABC transporter substrate-binding protein
[Methanohalobium evestigatum Z-7303]
gi|298287753|gb|ADI73719.1| Substrate-binding region of ABC-type glycine betaine transport
system [Methanohalobium evestigatum Z-7303]
Length = 304
Score = 180 bits (455), Expect = 3e-43, Method: Composition-based stats.
Identities = 56/299 (18%), Positives = 108/299 (36%), Gaps = 24/299 (8%)
Query: 4 ILAVCLFLTTFSISYARD--------------ADSCTPVRFADTGWTDIAATTAMTSVIL 49
++ + L L A V A W ATT + +
Sbjct: 12 MIGLVLMLAIAGAGCASQDGDTENGADNGNQTPSEEKSVTIAYVQWASAEATTNVVKEVY 71
Query: 50 EEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQG 109
E+ GY+ N++ A + ++ + N D + W P + + I V N
Sbjct: 72 EQA-GYEVNLQNTAAGIMYQGIANGDADFSVCSWLPDTQANYWDQYGD-QIDRVRVNTPE 129
Query: 110 AKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
K L V + + + ++ + + I GI+PG + + + G+
Sbjct: 130 VKTGLVVPEYV---DVDTIPELKGNESQFDGTITGIDPGAGIMSQTETALEEYELD--GY 184
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV 229
L +S A S +R N V W PH + ++ YL +++ +G + T+
Sbjct: 185 ELESSSGPAMTSALRSVISNEDSIVVTLWNPHWAFARWDLKYLDDPQDV--YGSDDIVTI 242
Query: 230 VRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
R + PN +L+N+ ++VA ++M I + + +P+ + WL
Sbjct: 243 ARQGLEEDKPNAYTILENLNWTVADNEQVMAYID-QGMSGEEAAEKWVEENPEKVNAWL 300
>gi|229589329|ref|YP_002871448.1| putative glycine betaine-binding protein [Pseudomonas fluorescens
SBW25]
gi|229361195|emb|CAY48059.1| putative glycine betaine-binding protein precursor [Pseudomonas
fluorescens SBW25]
Length = 283
Score = 180 bits (455), Expect = 3e-43, Method: Composition-based stats.
Identities = 55/290 (18%), Positives = 108/290 (37%), Gaps = 13/290 (4%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNI 59
M ++L L S ADS + W+D ATT + + ++++ LGY +
Sbjct: 3 MRRLLGAAATLVVAMSSTLASADS-KTLSIGYVDGWSDSVATTHVAAEVIKQKLGYDVKL 61
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ +A + ++ + +D + W P + + N + AK L V +
Sbjct: 62 QAVATGIMWQGVATGKLDAMLSAWLPVTHGEYW-AKNKDKVVDYGPNFKDAKIGLIVPEY 120
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
A I+ K KI GI+ G+ + + I ++L +S A
Sbjct: 121 VKAKSIEDL----KTDTTFKNKIVGIDAGSGVMLKTDEAIKQYGLD---YKLQASSGAAM 173
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+++ R + W PH + + + +L + I G +V ++ K P
Sbjct: 174 IAELTRAEDKQESIAVTGWVPHWMFAKWKLRFLDDPKGIYG-AAETVNSIGSKGLEKKAP 232
Query: 240 NISRLLKNIKF-SVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
++ LK ++ S E+M I + + HP+ + W+
Sbjct: 233 EVAAFLKKFQWASKDEIGEVMLAI-QEGAKPDAAAKDWVAKHPERVAEWI 281
>gi|300775528|ref|ZP_07085389.1| glycine betaine ABC superfamily ATP binding cassette transporter,
binding protein [Chryseobacterium gleum ATCC 35910]
gi|300505555|gb|EFK36692.1| glycine betaine ABC superfamily ATP binding cassette transporter,
binding protein [Chryseobacterium gleum ATCC 35910]
Length = 284
Score = 180 bits (455), Expect = 3e-43, Method: Composition-based stats.
Identities = 55/290 (18%), Positives = 119/290 (41%), Gaps = 12/290 (4%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNI 59
+ + L L ++S + + + W + A T + IL+E GY I
Sbjct: 4 LKYLFLPVLMLLFTALSSCENIKNSKYITIGMVDGWAEDVAMTHLAKAILDEQ-GYHVII 62
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ + + S+ N+ D+FMG W P + + + N + L V D
Sbjct: 63 QKASTDMILASMNNEDTDLFMGIWLPYTHA--KKLAKFPGLTYLGTNYDNGRIGLVVPDY 120
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+ S +++ ++K + +I GIE G I + K ++ I +S +A
Sbjct: 121 VP---VYSIEELNQHKDQFNRRIIGIEKGAGLTTGTDKAIIDYKLD---YQQINSSTIAM 174
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
++++ + V W+PH + + + +L ++I G E + T R + P
Sbjct: 175 ITELQNAIQRKEWIVVTGWQPHWMFGKMKLKFLDDPKKIYGEAE-QIKTYSRKSFSTDHP 233
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
++R + F ++++ + +K + + ++ HP+L+++WL
Sbjct: 234 ELARFFSKLHFDDENMSDLLMKMEQSKNK-EATAKEWVKDHPELVQSWLN 282
>gi|323494249|ref|ZP_08099361.1| hypothetical protein VIBR0546_06827 [Vibrio brasiliensis LMG 20546]
gi|323311412|gb|EGA64564.1| hypothetical protein VIBR0546_06827 [Vibrio brasiliensis LMG 20546]
Length = 329
Score = 180 bits (455), Expect = 4e-43, Method: Composition-based stats.
Identities = 42/319 (13%), Positives = 98/319 (30%), Gaps = 38/319 (11%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVT-FRSLKNKGIDI 78
AD C V AD W + + ILE + T ++ D+
Sbjct: 18 AQADECGKVTIADMNWNSASVMANVDQFILEHGYDCDAELIPGDTMPTGTSMIEKGQPDV 77
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVNDVGFA--LGIKSYQDIAKYK 135
W +L+ + +EE ++ ++L G + V + + + + K+
Sbjct: 78 APELWSNALKDALDKGVEEKRLRYAGKSLVDGGEEGFWVPAYLVKQYPEMATIEGVKKHA 137
Query: 136 KELGA-------KIYGIEPGNEGNQRILDMINNNKFSLKGFRLI-EASELASFSQIRRDQ 187
K Y G ++ GF ++ S I +
Sbjct: 138 KLFDHPEDPDQSAFYSCPAGWNCQISAGNLFKALGLEGSGFTIVDPGSSAGLSGAIAKAY 197
Query: 188 RNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS-------------------GFGEASVYT 228
W P + ++ + G ++ + + V+T
Sbjct: 198 EREEAWFGYYWAPTAVLGKYDMVKVDFGSGVNLEEFVGCTTQTECESPKPTMYPPSPVHT 257
Query: 229 VVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+ + + P F+ N+++ + +N+ D + L +P + + W+
Sbjct: 258 ITTEAFASRAPQAYEYFTKRGFTNKDMNQLLAWMEDNQADGEEASFHFLENYPQIWQTWV 317
Query: 289 IGVTTFDGQDPSRQLERFM 307
QD ++++++ +
Sbjct: 318 P-------QDVAKKVQQAL 329
>gi|108804394|ref|YP_644331.1| twin-arginine translocation pathway signal [Rubrobacter
xylanophilus DSM 9941]
gi|108765637|gb|ABG04519.1| Twin-arginine translocation pathway signal [Rubrobacter
xylanophilus DSM 9941]
Length = 313
Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats.
Identities = 61/291 (20%), Positives = 109/291 (37%), Gaps = 8/291 (2%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGY-KTNIKLLA 63
+ L + + S +R + GW + A + +T V+LEE LGY K ++ L
Sbjct: 30 IIGASLLGIAGCAGGASSSSNKMLRLGNIGWDENVAVSNLTKVLLEEELGYEKVELRTLD 89
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
V F + +D F W P K ++ + L A LAV D A
Sbjct: 90 VAPLFAGVARGDLDAFQDVWLPKTHKTYWEEYKDQVVNLGRWYKGEANLGLAVPDYVEAQ 149
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
I + KY+ E G +I GIE G+ + + F L+ +S A + +
Sbjct: 150 SIAD---LNKYRSEFGGEIIGIEAGSGIMRITEQEVI--PGYKLNFELVPSSTPAMLAAL 204
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
++ + P V +W+PH + + + YL + + G E V + R + P+
Sbjct: 205 KKAVESKDPIVVTAWKPHWMFTAYPLRYLKDPKNLFGGSETPVA-IARQGLREDLPDAFA 263
Query: 244 LLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTF 294
L + + I + + L+ + D++ W+
Sbjct: 264 FLDALTLDERQLGSLELEIQKAG-EPVKGAKNWLKGNRDVVNPWVEAAQKA 313
>gi|159186006|ref|NP_356597.2| ABC transporter, substrate binding protein (glycine betaine)
[Agrobacterium tumefaciens str. C58]
gi|159141140|gb|AAK89382.2| ABC transporter, substrate binding protein (glycine betaine)
[Agrobacterium tumefaciens str. C58]
Length = 332
Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats.
Identities = 51/339 (15%), Positives = 99/339 (29%), Gaps = 39/339 (11%)
Query: 1 MYKILAVCLFLTTFSISY-ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M +L + F+ S A A C V A W + ILE+ G I
Sbjct: 1 MKILLGATILSAGFAFSGGAAYAADCGNVTIASMNWQSAEVAANLDKFILEKGYGCSAEI 60
Query: 60 KLLAVPVTFRSL-KNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVN 117
T S+ + DI W + + LE G + A+ L GA +
Sbjct: 61 VTGDTVPTLTSMAEKGQPDIAPEAWVSLQPEIVKHGLEGGKVVAAAKILSDGAVQGWWIP 120
Query: 118 DVGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
K + + + ++ G G + G
Sbjct: 121 KYLADANPDLKTIPDLFKHPELFPAPEDKSKGAVFNGPQGWGGTVVTAQLFKAFGGEKAG 180
Query: 169 FRLIE-ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIH----------------- 210
F L++ S I + P V W P + +
Sbjct: 181 FTLVDTGSAAGLDGSIAKAYEAKQPWVGYYWAPTSLLGKYEMVKLGFGTEYDAAEWKRCT 240
Query: 211 --YLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQD 268
+ + + V T+V + D+ L ++ A N+++ + +N+
Sbjct: 241 SVADCPDPKPNAWQVDDVQTLVSKSFADRAGPAMDYLNKRAWTNATVNKLIAWMTDNQAT 300
Query: 269 RQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ + L+ + L K W+ + + +++ +
Sbjct: 301 GEDGAKQFLKENEALWKGWVS-------PEVAEKVKAAL 332
>gi|149180553|ref|ZP_01859057.1| Glycine betaine-binding protein [Bacillus sp. SG-1]
gi|148851706|gb|EDL65852.1| Glycine betaine-binding protein [Bacillus sp. SG-1]
Length = 287
Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats.
Identities = 54/296 (18%), Positives = 112/296 (37%), Gaps = 16/296 (5%)
Query: 1 MYKIL---AVCLFLTTFSISYARD----ADSCTPVRFADTGWTDIAATTAMTSVILEEIL 53
M KI+ + L T ++ + + W + A + M ++LEE
Sbjct: 1 MKKIIDLIVLGLIATGILLTGCNNEENGDGEDKSLVIGLNNWAENIAVSNMWKILLEEKE 60
Query: 54 GYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
Y+ +K + + + +DI W P+ +K + E + + +
Sbjct: 61 -YEVELKSMEKAPVWLGITRDELDIAPEVWLPNTDKPLMDKYGE-QLNMHEVWYENTGLG 118
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
L V I S +++ K E G +I GI+PG I L L+
Sbjct: 119 LVVPSYMED--ITSIEELNARKDEFGGRIVGIDPGASLTSMTQKAIEEYGLEL---DLVT 173
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+S A +++ + ++ P V W PH S+ ++ YL +++ G + +Y + R
Sbjct: 174 SSGPAMIAELSKAYKDKEPIVVTLWNPHWAFSEYDLKYLEDPKKVYGEAD-DIYYMTRKG 232
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+ + P + + + K +M +I + D + + + +++ WL
Sbjct: 233 FEEDHPEVVKSMNTWKMDDESLGNLMAVIKDTG-DPAEGAKAWIEDNREMVDQWLK 287
>gi|306842375|ref|ZP_07475032.1| Substrate-binding region of ABC-type glycine betaine transport
system [Brucella sp. BO2]
gi|306287514|gb|EFM58979.1| Substrate-binding region of ABC-type glycine betaine transport
system [Brucella sp. BO2]
Length = 355
Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats.
Identities = 52/339 (15%), Positives = 104/339 (30%), Gaps = 39/339 (11%)
Query: 1 MYKILAV-CLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M K+LA CL A +A C V A W + + IL ++I
Sbjct: 24 MKKLLASTCLMFGLIGSVSASNAAECGTVTIASMNWASAELLANVDNFILHNGYDCDSSI 83
Query: 60 KLLAVPVTFRSL-KNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVN 117
L T S+ + D+ W + ++EG + + ++ G + V
Sbjct: 84 VLGDTVPTLTSMAEKGQPDVAPEAWASLIPPVTQKNIDEGKLLIAGKSFVDGGIQGIYVP 143
Query: 118 DVGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
IK + + + G G G
Sbjct: 144 KFIVDEHPEIKTIADAIKHPELFPNPEDPSRGAWSAGQQGWGGTIIASQYYKAYNAKDAG 203
Query: 169 FRLIE-ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG------------ 215
F L++ S + + WEP + ++ LP G
Sbjct: 204 FDLVDTGSAAGHDGSVIHAYERKRGWIGYYWEPTALLGKYDMVRLPSGVAYDEAEWNRCN 263
Query: 216 -------EEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQD 268
+ + + V T+V + + LK + A N+M+ + +N+
Sbjct: 264 KVENCPDPKPNEWPPDDVNTIVTKKFAEGAGPAYDYLKTRSWPNATVNKMLAWMADNQAT 323
Query: 269 RQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ + L+++PD+ W+ +D + +++ +
Sbjct: 324 GEDGAKEFLKSYPDVWTKWVP-------EDVAEKVKGAL 355
>gi|163790851|ref|ZP_02185276.1| glycine betaine ABC transporter glycine betaine-binding protein
[Carnobacterium sp. AT7]
gi|159873919|gb|EDP67998.1| glycine betaine ABC transporter glycine betaine-binding protein
[Carnobacterium sp. AT7]
Length = 298
Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats.
Identities = 60/307 (19%), Positives = 109/307 (35%), Gaps = 27/307 (8%)
Query: 1 MYKI------LAVCLFLTTFSISY----------ARDADSCTPVRFADTGWTDIAATTAM 44
M K L L L+ + A + A W A+T +
Sbjct: 1 MKKFNWKHLGLTAGLGLSLVAAGCSTEKTSTEDQASSVGQGKEIELAYVEWDTEVASTNV 60
Query: 45 TSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA 104
+LE+ LGY + L V ++++ + D + W P+ + +
Sbjct: 61 IGKVLED-LGYDVKLTPLDNAVMWQAVASGDADAMVAAWLPATHGSQFEEYG-NQMVNLG 118
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKF 164
NL+GA L V + I E I GIEPG + +
Sbjct: 119 PNLEGALVGLVVPEYM------DVNSIDDLTDEAKMTITGIEPGAGVVAATETALTDYD- 171
Query: 165 SLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEA 224
+L ++L +S A ++ + +N V W PH + + ++ YL E G E
Sbjct: 172 NLSEWKLETSSSGAMTVELGQAIKNKEEIVITGWSPHWMFATYDLKYLEDPEGSFGESE- 230
Query: 225 SVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLL 284
++ T+ R + P +++L ++ +M I +D + T + +P+ +
Sbjct: 231 TINTMAREGLEEDMPEANQVLDQFNWTTEEMESIMLEIS-EGEDPEVAAETWIEENPERV 289
Query: 285 KNWLIGV 291
W GV
Sbjct: 290 AEWTEGV 296
>gi|239978545|ref|ZP_04701069.1| putative glycine betaine ABC transporter substrate-binding and
permease component [Streptomyces albus J1074]
Length = 620
Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats.
Identities = 59/310 (19%), Positives = 118/310 (38%), Gaps = 17/310 (5%)
Query: 1 MYKILAVCLFLTTFSISYARDADS---------CTPVRFADTGWTDIAATTAMTSVILEE 51
M ++ + L + D ++ + W + A+T + +LE+
Sbjct: 52 MVGVVVLALIAGGMGALGSSDNEAQADSGNVGQGREINIGYIPWDEGIASTYLWKEMLEQ 111
Query: 52 ILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAK 111
G+K N + + + N ID W P+ + + ++ +
Sbjct: 112 R-GFKVNAQQYEAGALYTGMANGEIDFETDSWLPTTHESYWKKYGD-KLEDMGSWYGPTS 169
Query: 112 YMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
+AV GI+S +D+ + +I GIEPG Q + + K F++
Sbjct: 170 LEIAVPSYV--KGIESMEDLKGQADKFKGRIVGIEPGAGEMQLLKSKVLKEYGLDKEFKV 227
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVR 231
++ S A ++++R P W PH ++ ++ L + G G+ ++T+ R
Sbjct: 228 VDGSTPAMLAELKRAYAKKEPIATTLWSPHWAYNEFDLTKLKDPKGAWGEGD-EIHTLAR 286
Query: 232 SDYLDKCPNISRLLKNIKFSVALENEMMKLIL-NNKQDRQFVGRTMLRTHPDLLKNW--L 288
+ + P + + LK+ K S + I +K Q R L+ PD L W +
Sbjct: 287 KGFSKEFPEVGKWLKDFKMSEKQLTSLEAEIQGADKGKEQDAVRAWLKDQPDALDKWAPV 346
Query: 289 IGVTTFDGQD 298
G + G++
Sbjct: 347 SGGDSDKGRE 356
Score = 151 bits (382), Expect = 9e-35, Method: Composition-based stats.
Identities = 46/278 (16%), Positives = 105/278 (37%), Gaps = 11/278 (3%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKN- 73
+ D+D + W + A+T + +LE+ G+K N + + + N
Sbjct: 344 APVSGGDSDKGREINVGYIPWDEGIASTFLWKEMLEQR-GFKVNAQQYEAGALYTGMANA 402
Query: 74 ----KGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQ 129
ID+ W P+ +K + + + + LAV D +KS
Sbjct: 403 AMSRGQIDVQFDAWLPNTQKKYWDKY-QNELVDLGDWYGPTSLELAVPDYV--KDVKSLA 459
Query: 130 DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRN 189
D+ ++ +I GIE G E + + + ++++++S ++++R
Sbjct: 460 DLKGKGEQFDGRIVGIEAGTETMDILKNKVVPGYGLSGEYKVVDSSTPGMLAELKRAYAK 519
Query: 190 NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
P + W PH ++ ++ L +++ G G+ + TV + + P S ++ +
Sbjct: 520 KEPIAVMLWTPHWAYNEYKLNKLEDPKKLFGEGD-QLRTVAHKSFTENYPVASDWFRDFE 578
Query: 250 FSVALENEMMKLILNNKQ-DRQFVGRTMLRTHPDLLKN 286
S + I + L+ +P+++
Sbjct: 579 LSEDQLAGLENEIQKLGTGKEEQAVDAWLKENPEMVDK 616
>gi|306846036|ref|ZP_07478602.1| Substrate-binding region of ABC-type glycine betaine transport
system [Brucella sp. BO1]
gi|306273525|gb|EFM55376.1| Substrate-binding region of ABC-type glycine betaine transport
system [Brucella sp. BO1]
Length = 332
Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats.
Identities = 52/339 (15%), Positives = 104/339 (30%), Gaps = 39/339 (11%)
Query: 1 MYKILAV-CLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M K+LA CL A +A C V A W + + IL ++I
Sbjct: 1 MKKLLASTCLMFGLIGSVSASNAAECGTVTIASMNWASAELLANVDNFILHNGYDCDSSI 60
Query: 60 KLLAVPVTFRSL-KNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVN 117
L T S+ + D+ W + ++EG + + ++ G + V
Sbjct: 61 VLGDTVPTLTSMAEKGQPDVAPEAWASLIPPVTQKNIDEGKLLIAGKSFVDGGIQGIYVP 120
Query: 118 DVGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
IK + + + G G G
Sbjct: 121 KFIVDEHPEIKTIADAIKHPELFPNPEDPSRGAWSAGQQGWGGTIIASQYYKAYNAKDAG 180
Query: 169 FRLIE-ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG------------ 215
F L++ S + + WEP + ++ LP G
Sbjct: 181 FDLVDTGSAAGHDGSVIHAYERKRGWIGYYWEPTALLGKYDMVRLPSGVAYDEAEWNRCN 240
Query: 216 -------EEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQD 268
+ + + V T+V + + LK + A N+M+ + +N+
Sbjct: 241 KVENCPDPKPNEWPPDDVNTIVTKKFAEGAGPAYDYLKTRSWPNATVNKMLAWMADNQAT 300
Query: 269 RQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ + L+++PD+ W+ +D + +++ +
Sbjct: 301 GEDGAKEFLKSYPDVWTKWVP-------EDVAEKVKGAL 332
>gi|56697292|ref|YP_167658.1| glycine betaine/proline ABC transporter, periplasmic glycine
betaine/proline-binding protein [Ruegeria pomeroyi
DSS-3]
gi|56679029|gb|AAV95695.1| glycine betaine/proline ABC transporter, periplasmic glycine
betaine/proline-binding protein [Ruegeria pomeroyi
DSS-3]
Length = 324
Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats.
Identities = 47/308 (15%), Positives = 89/308 (28%), Gaps = 21/308 (6%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
LA + S + C V + W T ++E+ G + A
Sbjct: 7 LARSVIAVAAMTSASAAWAECGEVSLTEMNWPSSQIITHTAKFLMEQGYGCTVELVPSAT 66
Query: 65 -PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVNDVGFA 122
+N DI W S + EG ++ +AE G +
Sbjct: 67 VTSVASLAENGEPDIVTELWLNSAGEAYLKLEAEGKVERLAEVFNPGGLEGWWIPTYLAE 126
Query: 123 --LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ + I +G + G ++I K S
Sbjct: 127 ANPELTTVAGILANPDLVGGRFNNCPVGWGCRIVNDNLITALGMRDKMEIFDHGSGETLA 186
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG-----------------EEISGFGE 223
+ I + P W P + + + G +S F
Sbjct: 187 TSIAAAYEDKTPWFGYYWAPTAVLGKYPMTQISIGDIDMDVHLANQSAENANPGVSDFPP 246
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDL 283
A V TV S ++ P+++ L++N+ F + + N ++ +N + L + D+
Sbjct: 247 APVLTVATSALTERAPDVADLMRNVSFDIEVMNAVLAWKDDNGASAEEAAVYFLSNNSDV 306
Query: 284 LKNWLIGV 291
W+
Sbjct: 307 WAGWVNDA 314
>gi|163801349|ref|ZP_02195248.1| hypothetical ABC transporter, substrate binding protein [Vibrio sp.
AND4]
gi|159174838|gb|EDP59638.1| hypothetical ABC transporter, substrate binding protein [Vibrio sp.
AND4]
Length = 330
Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats.
Identities = 45/331 (13%), Positives = 101/331 (30%), Gaps = 38/331 (11%)
Query: 8 CLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVT 67
L + +A C V AD W + ILE G + T
Sbjct: 7 LLLAIGAIAATNVNASECGTVTIADMNWNSATLIANVDRFILEHGYGCDAELIPGDTMPT 66
Query: 68 -FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVNDVGFA--L 123
++ D+ W SL+ + ++E ++ + L +G + +
Sbjct: 67 GTSMIEKGQPDVAPELWSNSLKDALDKGVKEKRLRYAGKALIEGGEEGFWIPAYLVEQYP 126
Query: 124 GIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNNKFSLKGFRLI-EAS 175
+K+ + + K+ K Y G ++ S GF +I S
Sbjct: 127 EMKTIEGVKKHAKLFSHPEDKAKSAFYSCPAGWNCQISAGNLFKAMALSDSGFDIIDPGS 186
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIH-------------------YLPGGE 216
I + W P + ++
Sbjct: 187 SAGLSGSIAKAYERKEAWFGYYWAPTAVLGKYDMVKVDFGSGVDEKEFVSCTTQADCADP 246
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
+ + + + V+T+ ++ + P F+ A N+++ + +N+ D +
Sbjct: 247 KATMYPPSPVHTITTEEFASRSPAAYDYFTKRGFTNADMNQLLAWMEDNQADGEETMFHF 306
Query: 277 LRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
L ++P + W+ QD +++++ +
Sbjct: 307 LESYPQIWTKWVP-------QDVAKKVQGAL 330
>gi|78358346|ref|YP_389795.1| glycine/betaine/L-proline ABC transporter periplasmic-binding
protein [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
gi|78220751|gb|ABB40100.1| glycine/betaine/L-proline ABC transporter, periplasmic-binding
protein [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
Length = 301
Score = 179 bits (453), Expect = 5e-43, Method: Composition-based stats.
Identities = 56/303 (18%), Positives = 108/303 (35%), Gaps = 19/303 (6%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M +++ + + R A+ PV A W+ A+ + +++E LG +
Sbjct: 1 MRRVIVFVAAVLILAAGPVRAAE--KPVTIAYAQWSSSIASANLMKALIQEKLGIPCTLV 58
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+R + D + W P + + NL+G + L V V
Sbjct: 59 AAGAGEMWRMVAAGEADAMLSAWLPHTHSAYRARYAGM-LDDLGPNLEGTRTGLVVPRVT 117
Query: 121 F-------------ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
+ S + K + +I GIEP ++ ++
Sbjct: 118 AGRFTAGTGLRNRPYVTTASIPALRKDAQRYRHRIIGIEPDAGVMEKAERALDVYGLRDS 177
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
RL SE+A +++ R+ VF W PH + N+ +L E + + ++
Sbjct: 178 F-RLESGSEVAMMAELSHAVRHQEWVVFTGWLPHWAFARWNLEFLEDPEGVFSESGS-IH 235
Query: 228 TVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNN-KQDRQFVGRTMLRTHPDLLKN 286
T+ R ++ + RLL +S ++M I ++ +RTHP+ +
Sbjct: 236 TMTRKGLAEENQAVFRLLDAFYWSPEDMGQLMLWIQDDKGLFPYEKALRWIRTHPEKVTR 295
Query: 287 WLI 289
WL
Sbjct: 296 WLA 298
>gi|187478968|ref|YP_786992.1| glycine betaine/L-proline ABC transporter substrate-binding
periplasmic protein [Bordetella avium 197N]
gi|115423554|emb|CAJ50090.1| glycine betaine/L-proline ABC transporter,substrate-binding
periplasmic protein [Bordetella avium 197N]
Length = 331
Score = 179 bits (453), Expect = 5e-43, Method: Composition-based stats.
Identities = 52/333 (15%), Positives = 109/333 (32%), Gaps = 36/333 (10%)
Query: 3 KILAVCLFLTTFSISYARDA--DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
K LA L+ F+ + + PV+F W + ILE+ G +T +
Sbjct: 7 KALAATAVLSVFAGAVHAAPQCEVKGPVKFGGMNWESNLVLVDVERFILEKGYGCQTEVL 66
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+L+ +DI W S+ + G +K V + G +
Sbjct: 67 PTETLPALAALERGDLDINTEIWLNSVADPWEKAEKTGKVKRVGDLYMGG-EGWFIPRYT 125
Query: 121 FA--LGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
+KS D+ K+K + + YG G ++ + K
Sbjct: 126 AERYPELKSAADLPKFKDKFKDPEEPGKGRFYGCPAGWGCEVTSNNLFHALKLDDSFTLY 185
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE-------------- 217
+ A + + + VF W P P+ +++ L
Sbjct: 186 SPGTGAAQKAALTSAYKRKQDVVFYYWYPTPLVGSMDLVKLEMPPYDAEKHKCLTSPKCE 245
Query: 218 ---ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGR 274
S + E V+T + S++ K P ++ + +E + + ++ D V +
Sbjct: 246 KPEASAYPENPVFTALNSNFAKKAPQLTEFFSKVSLPREQMDETLAHMESSGDDASEVAQ 305
Query: 275 TMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
L+ ++ K W+ + + +++ +
Sbjct: 306 WFLKNKAEVWKKWVP-------TEVAARVQSAL 331
>gi|291450441|ref|ZP_06589831.1| glycine betaine ABC transport system permease [Streptomyces albus
J1074]
gi|291353390|gb|EFE80292.1| glycine betaine ABC transport system permease [Streptomyces albus
J1074]
Length = 618
Score = 179 bits (453), Expect = 5e-43, Method: Composition-based stats.
Identities = 59/310 (19%), Positives = 118/310 (38%), Gaps = 17/310 (5%)
Query: 1 MYKILAVCLFLTTFSISYARDADS---------CTPVRFADTGWTDIAATTAMTSVILEE 51
M ++ + L + D ++ + W + A+T + +LE+
Sbjct: 50 MVGVVVLALIAGGMGALGSSDNEAQADSGNVGQGREINIGYIPWDEGIASTYLWKEMLEQ 109
Query: 52 ILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAK 111
G+K N + + + N ID W P+ + + ++ +
Sbjct: 110 R-GFKVNAQQYEAGALYTGMANGEIDFETDSWLPTTHESYWKKYGD-KLEDMGSWYGPTS 167
Query: 112 YMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
+AV GI+S +D+ + +I GIEPG Q + + K F++
Sbjct: 168 LEIAVPSYV--KGIESMEDLKGQADKFKGRIVGIEPGAGEMQLLKSKVLKEYGLDKEFKV 225
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVR 231
++ S A ++++R P W PH ++ ++ L + G G+ ++T+ R
Sbjct: 226 VDGSTPAMLAELKRAYAKKEPIATTLWSPHWAYNEFDLTKLKDPKGAWGEGD-EIHTLAR 284
Query: 232 SDYLDKCPNISRLLKNIKFSVALENEMMKLIL-NNKQDRQFVGRTMLRTHPDLLKNW--L 288
+ + P + + LK+ K S + I +K Q R L+ PD L W +
Sbjct: 285 KGFSKEFPEVGKWLKDFKMSEKQLTSLEAEIQGADKGKEQDAVRAWLKDQPDALDKWAPV 344
Query: 289 IGVTTFDGQD 298
G + G++
Sbjct: 345 SGGDSDKGRE 354
Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats.
Identities = 46/278 (16%), Positives = 105/278 (37%), Gaps = 11/278 (3%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKN- 73
+ D+D + W + A+T + +LE+ G+K N + + + N
Sbjct: 342 APVSGGDSDKGREINVGYIPWDEGIASTFLWKEMLEQR-GFKVNAQQYEAGALYTGMANA 400
Query: 74 ----KGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQ 129
ID+ W P+ +K + + + + LAV D +KS
Sbjct: 401 AMSRGQIDVQFDAWLPNTQKKYWDKY-QNELVDLGDWYGPTSLELAVPDYV--KDVKSLA 457
Query: 130 DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRN 189
D+ ++ +I GIE G E + + + ++++++S ++++R
Sbjct: 458 DLKGKGEQFDGRIVGIEAGTETMDILKNKVVPGYGLSGEYKVVDSSTPGMLAELKRAYAK 517
Query: 190 NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
P + W PH ++ ++ L +++ G G+ + TV + + P S ++ +
Sbjct: 518 KEPIAVMLWTPHWAYNEYKLNKLEDPKKLFGEGD-QLRTVAHKSFTENYPVASDWFRDFE 576
Query: 250 FSVALENEMMKLILNNKQ-DRQFVGRTMLRTHPDLLKN 286
S + I + L+ +P+++
Sbjct: 577 LSEDQLAGLENEIQKLGTGKEEQAVDAWLKENPEMVDK 614
>gi|288574003|ref|ZP_06392360.1| Substrate-binding region of ABC-type glycine betaine transport
system [Dethiosulfovibrio peptidovorans DSM 11002]
gi|288569744|gb|EFC91301.1| Substrate-binding region of ABC-type glycine betaine transport
system [Dethiosulfovibrio peptidovorans DSM 11002]
Length = 330
Score = 179 bits (453), Expect = 6e-43, Method: Composition-based stats.
Identities = 52/332 (15%), Positives = 99/332 (29%), Gaps = 36/332 (10%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL 62
K +V L L S A A S + FAD W + ILE + L
Sbjct: 6 KFFSVILTLGVILSSVAASAGSK--IVFADFSWESAQFHNRVAGYILEHGFDREVAYSLT 63
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
F L+ + + M W + ++G + + +N A V
Sbjct: 64 EEMPGFLGLERGDLQLAMETWVDNSIAIWDKITKKGKVLEMGKNYPNAPQGWYVPTFIIE 123
Query: 123 -----------LGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNNKF 164
++S D+ KY K + G + + +D +
Sbjct: 124 GDPERGIEPLAPDLRSVTDLPKYWKIFQDPENKDKGRFLNGPTGWPISIKNVDRLKAYGL 183
Query: 165 SLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE-------- 216
S A I P + WEP P+ ++ L
Sbjct: 184 DDTYVNFYAGSGAALAVGIASAYEKGRPVLAYYWEPTPLLGKYDMTKLEEPPYDPKVWKE 243
Query: 217 -EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRT 275
+ F V +L+ P I ++ + S+ L +E + ++
Sbjct: 244 TGMCAFPACRVLKTGNRAFLESEPEIRDFVERYETSLELTSEALAVMDTEGMSGPQAAEW 303
Query: 276 MLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
L+ HP++ +W+ ++ ++ + +
Sbjct: 304 FLKEHPEVWSSWVD-------EEVRAKVSKAL 328
>gi|329954687|ref|ZP_08295747.1| ABC transporter, substrate-binding protein, QAT family [Bacteroides
clarus YIT 12056]
gi|328527228|gb|EGF54232.1| ABC transporter, substrate-binding protein, QAT family [Bacteroides
clarus YIT 12056]
Length = 283
Score = 179 bits (453), Expect = 6e-43, Method: Composition-based stats.
Identities = 55/266 (20%), Positives = 116/266 (43%), Gaps = 9/266 (3%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGY 82
++ + A W++ A + + VILEE GY + + F SL K D+FM
Sbjct: 24 NNDKKISIAYANWSEGIAMSHLAKVILEEH-GYDVRMLNADLAPIFASLSRKKADVFMDV 82
Query: 83 WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKI 142
W P + ++++++ A+ L V + I+S +++ YK + KI
Sbjct: 83 WMPVTMHDYMEQYGD-KLEIISDVYDNARIGLVVPEYV---TIQSIEELNGYKDKFSGKI 138
Query: 143 YGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP 202
GI+ G + +++ ++L+ AS A + + + + V W PH
Sbjct: 139 IGIDAGAGIMKTTEKVLDGYGLD---YKLMTASAPAMTTSLGKAIQKKEWVVVTGWTPHW 195
Query: 203 INSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI 262
+ + L ++I E+ ++TV + +K P ++ LL+NI+ + + +M +
Sbjct: 196 MFGRYKLKVLDDPKQIYDKAES-IHTVTWKGFSEKEPFVTELLRNIRLNDEQISSLMTAV 254
Query: 263 LNNKQDRQFVGRTMLRTHPDLLKNWL 288
++ + R ++ H L+ +W+
Sbjct: 255 EETRKTETYAARQWMKEHQALVDSWI 280
>gi|188586225|ref|YP_001917770.1| Substrate-binding region of ABC-type glycine betaine transport
system [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179350912|gb|ACB85182.1| Substrate-binding region of ABC-type glycine betaine transport
system [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 287
Score = 179 bits (453), Expect = 6e-43, Method: Composition-based stats.
Identities = 61/287 (21%), Positives = 119/287 (41%), Gaps = 10/287 (3%)
Query: 4 ILAVCLFLTTFSISYARD--ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+L + + I + A+ V+ W +A T + + ILEE +GY+ + +
Sbjct: 8 MLVAVMIIGLLVIVACSEGEAEEVQEVKIPYVDWACASAKTHLVAGILEE-MGYEVELTM 66
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
V + L D ++ W P E ++ + +GA+ L V D
Sbjct: 67 ADPGVVYTDLARGNQDFYVAAWLPVTHGSYYEEHGE-NLSDLGAIFEGARIGLVVPDYV- 124
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
I S ++ +Y E +I GI+ G + + + SL+ + LI +S+ +
Sbjct: 125 --DIDSIDELKEYIAEFDGEIIGIDSGAGIMEATENAQEAYE-SLEDYSLITSSDSGMTA 181
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNI 241
++RR +N V W PH ++ ++ +L E I G E + + R+D + P +
Sbjct: 182 ELRRSIQNEDWVVVTGWTPHWKFAEWDLKFLDDPEGIYGEAE-DIRVMARTDLEEDMPEV 240
Query: 242 SRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
LL+N+ + E+M +I + D + + + D + W+
Sbjct: 241 VELLENMFLTDEELGELMGMISESG-DEAGSVKEWMEKYEDQVSQWI 286
>gi|228991605|ref|ZP_04151549.1| Glycine betaine-binding protein [Bacillus pseudomycoides DSM 12442]
gi|229009065|ref|ZP_04166404.1| Glycine betaine-binding protein [Bacillus mycoides Rock1-4]
gi|228752235|gb|EEM01924.1| Glycine betaine-binding protein [Bacillus mycoides Rock1-4]
gi|228768174|gb|EEM16793.1| Glycine betaine-binding protein [Bacillus pseudomycoides DSM 12442]
Length = 270
Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats.
Identities = 64/278 (23%), Positives = 115/278 (41%), Gaps = 9/278 (3%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSL 71
+ A +A++ ++ T W + A M V+LEE GYK + L + +
Sbjct: 1 MIITSCNATNANTKGKIKLGVTSWKENIAAANMWKVLLEEK-GYKVELMYLEKAAIWTGV 59
Query: 72 KNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDI 131
+D + W P +K + + I L ++ +G L V I S +D+
Sbjct: 60 ARGDVDANLEVWLPVTDKPLNDRY-KNDIVLKSKWYEGTGLGLVVPSY--MKDINSIEDL 116
Query: 132 AKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI 191
+K EL KI GIEPG+ + L +L+++SE A S++++
Sbjct: 117 NSHKDELDNKIIGIEPGSSLMNLTDKAMKEYDIKL---KLVQSSEAAMMSELKKAYTQKK 173
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFS 251
P W PH S+ ++ YL +++ G + +Y VR + P I + K S
Sbjct: 174 PIAVTLWNPHWSFSEFDLKYLKDPKKVYGEKD-DIYYSVRKGFEKDYPEIVKYFDRWKMS 232
Query: 252 VALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+M +LN +D + R ++ + L+ W+
Sbjct: 233 DEQLGTLMV-MLNKTKDPEEAARKWIKKNQALVNEWIK 269
>gi|224826863|ref|ZP_03699962.1| Substrate-binding region of ABC-type glycine betaine transport
system [Lutiella nitroferrum 2002]
gi|224600850|gb|EEG07034.1| Substrate-binding region of ABC-type glycine betaine transport
system [Lutiella nitroferrum 2002]
Length = 282
Score = 178 bits (452), Expect = 7e-43, Method: Composition-based stats.
Identities = 59/282 (20%), Positives = 105/282 (37%), Gaps = 10/282 (3%)
Query: 8 CLFLTTFSISYARDADSCTPVRFADT-GWTDIAATTAMTSVILEEILGYKTNIKLLAVPV 66
L S A A ++ GW D ATT + + I++ LGY + +A +
Sbjct: 10 LLAAIGLVCSSASWAADKPLIKIGYVEGWADSVATTQVAAAIIKTKLGYPVELVPVAAGI 69
Query: 67 TFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIK 126
++ + +D + W P L++ + + N GAK L V + A K
Sbjct: 70 MWQGVARGDLDATLSAWLPVTHGDYYQQLKD-KVTDLGPNYPGAKIGLIVPEYVPA---K 125
Query: 127 SYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRD 186
S D+ KYK +I GI+ G ++ I + ++L+ +S S++ R
Sbjct: 126 SLADLNKYKDAFQGRIVGIDAGAGVMKKTELAIKDYNLD---YKLMPSSGPGMASELARS 182
Query: 187 QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLK 246
P W PH + + + +L +++ G E V TV+ K P + LK
Sbjct: 183 INAKKPIAVTGWIPHWMFAKWKLRFLEDPKKVYGE-EEHVDTVINPGLNAKAPQVVSFLK 241
Query: 247 NIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+ +M + N + + + WL
Sbjct: 242 KFSWKPEEIGAVMLEV-ENGAKPAAAAEKWVGANGKRVAGWL 282
>gi|188585308|ref|YP_001916853.1| Substrate-binding region of ABC-type glycine betaine transport
system [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179349995|gb|ACB84265.1| Substrate-binding region of ABC-type glycine betaine transport
system [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 317
Score = 178 bits (452), Expect = 8e-43, Method: Composition-based stats.
Identities = 59/262 (22%), Positives = 110/262 (41%), Gaps = 9/262 (3%)
Query: 26 TPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYP 85
+ A W D ATT + ILEE +GY+ + + + + D+F+G W P
Sbjct: 63 QTIEIAYVNWADCVATTYLAKEILEEEMGYEVELTMADPGPIYTDIAEGEHDVFLGGWLP 122
Query: 86 SLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGI 145
+ ++ + ++ N +GA+ L V D I S +D+ + +I GI
Sbjct: 123 ITHEEYWEEYQD-KVDKISPNFEGARIGLVVPDYV---DIDSIEDMNDVTDKFDGEIIGI 178
Query: 146 EPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINS 205
+PG Q + + F LIE S+ A + ++ V W PH +
Sbjct: 179 DPGAGIMQTTETALEEYGLN---FNLIEGSDPAMATALQESIEEEEWVVVTGWIPHWKFA 235
Query: 206 DLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNN 265
++ +L +++ G E ++Y + RSD P + L+ + S E+M I N
Sbjct: 236 TWDLEFLEDPKKVYGEQE-NIYNIGRSDLEQDLPEVREFLEEFQLSQQGLGELMADI-NE 293
Query: 266 KQDRQFVGRTMLRTHPDLLKNW 287
+D + + + + D +++W
Sbjct: 294 TEDEEESAKRWIEDNSDKVEDW 315
>gi|157377367|ref|YP_001475967.1| ABC transporter substrate-binding protein [Shewanella sediminis
HAW-EB3]
gi|157319741|gb|ABV38839.1| conserved hypothetical ABC transporter, substrate binding protein
[Shewanella sediminis HAW-EB3]
Length = 334
Score = 178 bits (452), Expect = 8e-43, Method: Composition-based stats.
Identities = 52/319 (16%), Positives = 95/319 (29%), Gaps = 31/319 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M ++ + L + + A + C V AD W+ + + ILE G + +
Sbjct: 1 MKSMILIGGLLLSSATHQAFAEEQCGKVTIADMNWSSASLIANVDRFILEHGYGCEAELI 60
Query: 61 LLAVPVTFRSL-KNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVND 118
T S+ + DI W S+++ I + + + + +L +G + V
Sbjct: 61 PGDTMPTSTSMVEKGEPDIAPEIWSNSVKELIERGVSDKRLTIAGNSLSEGGEEGFWVPQ 120
Query: 119 VGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
I + + YG G ++ K S GF
Sbjct: 121 YMVDKDPSLTTIEGIIAKVKTFEHPEDPDRGAFYGCPAGWGCQLSAENLYRALKLSDAGF 180
Query: 170 RLI-EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNI------------------- 209
LI S I R P W P + +
Sbjct: 181 DLIDPGSGAGLSGSIARAYEREKPWFGYYWAPTAVLGKYKMAKVDFGSGTDADHFRDCIA 240
Query: 210 HYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDR 269
+++ + A V TV + + +K L + A N ++ + +N+ D
Sbjct: 241 KVECAEPKVTMYPSALVQTVTTTAFAEKSTREFEYLGTRSLTNAQMNGLLAWMEDNQADG 300
Query: 270 QFVGRTMLRTHPDLLKNWL 288
L H D W+
Sbjct: 301 NIAAEYFLMNHEDTWLKWV 319
>gi|227818730|ref|YP_002822701.1| ABC-type proline/glycine betaine transport system, periplasmic
component [Sinorhizobium fredii NGR234]
gi|36958983|gb|AAQ87408.1| Glycine betaine/L-proline-binding protein [Sinorhizobium fredii
NGR234]
gi|227337729|gb|ACP21948.1| predicted ABC-type proline/glycine betaine transport system,
periplasmic component [Sinorhizobium fredii NGR234]
Length = 332
Score = 178 bits (452), Expect = 8e-43, Method: Composition-based stats.
Identities = 45/339 (13%), Positives = 97/339 (28%), Gaps = 39/339 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K+LA + + +C V A W A+ IL E G I
Sbjct: 1 MKKLLASTCLIAGYLAVTGTANAACGDVTIASMNWQSAEVLAALDKFILTEGYGCNAEII 60
Query: 61 LLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVND 118
+ P ++ D+ W L + + + +G + A++L G +
Sbjct: 61 VGDTVPTITSMIEKGEPDVAPEGWVGLLPEVVNGGIGDGKLVAAADSLSDGGVQGWWIPK 120
Query: 119 VGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
+K + + + ++ G G + + F
Sbjct: 121 YVADAHPDIKTIDDALKHPELFPDPEDKSKGAVHNGPAGWGGTVVTGQLYKAYGGAAANF 180
Query: 170 RLIE-ASELASFSQIRRDQRNNIPAVFLSWEPHPI-------------------NSDLNI 209
LI+ S I + V W P + N
Sbjct: 181 TLIDTGSAAGLDGSIAKAYERKEGWVGYYWAPTALLGKYAMVKLDHGVAFNAAEWKRCNT 240
Query: 210 HYLPGGEEISGFGEASVYTVVRSDYLDKCP-NISRLLKNIKFSVALENEMMKLILNNKQD 268
+ + + + V T+V + D+ + L ++ N++M + +N+
Sbjct: 241 VADCADPKKNDWPKDKVQTLVTKGFSDRAGAEVMGYLGKRSWTNDTVNKLMAWMTDNQAT 300
Query: 269 RQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ + L + L W+ + + ++ +
Sbjct: 301 GEDGAKHFLEENEALWTQWVS-------PEVAENIKAAL 332
>gi|73669864|ref|YP_305879.1| glycine betaine/L-proline ABC transporter solute-binding protein
[Methanosarcina barkeri str. Fusaro]
gi|72397026|gb|AAZ71299.1| glycine betaine/L-proline ABC transporter, solute-binding protein
[Methanosarcina barkeri str. Fusaro]
Length = 312
Score = 178 bits (451), Expect = 8e-43, Method: Composition-based stats.
Identities = 58/298 (19%), Positives = 106/298 (35%), Gaps = 23/298 (7%)
Query: 4 ILAVCLFLTTFS------------ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEE 51
I+ + L S + ++ PV+ W A+T + +L++
Sbjct: 22 IIGLALLAAGCSEKENETAEGTDTPTATGTSEFSEPVKIGYVLWDGEIASTNVMQQVLKK 81
Query: 52 ILGYK-TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGA 110
GYK I + ++ L + D W P K + + V NL+
Sbjct: 82 A-GYKDVEITAVDAGPLYQVLADGQFDFTTSAWLPYTHKHYWEVYGD-RLDSVQTNLEDC 139
Query: 111 KYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
K L V I S +++ K + KI GIEPG Q I++
Sbjct: 140 KIGLVVPSYVP---INSIEELNSEKDKFDGKIIGIEPGAGIMQASETAISDYGLE---ME 193
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
L+ S A + +++ + V W PH + ++ YL + G + V T+
Sbjct: 194 LVPGSSAAMTASLKKALDSKEWIVVTLWSPHWAFNRWDLKYLDDPKGSYGDAD-HVETLA 252
Query: 231 RSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
R ++ PN+ +L K++ +M I N + + +P + W+
Sbjct: 253 RLGLKEEKPNLYGILTRFKWTHDDIQTIMMDI-ENGTTPEVAAEKWVENNPQKVNEWI 309
>gi|86146032|ref|ZP_01064359.1| hypothetical ABC transporter, substrate binding protein [Vibrio sp.
MED222]
gi|85836237|gb|EAQ54368.1| hypothetical ABC transporter, substrate binding protein [Vibrio sp.
MED222]
Length = 330
Score = 178 bits (451), Expect = 9e-43, Method: Composition-based stats.
Identities = 45/338 (13%), Positives = 99/338 (29%), Gaps = 39/338 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M L+ +FL + S +A C V AD W + ILE G +
Sbjct: 1 MKYKLSS-VFLLVAAASGNANAGECGSVTIADMNWNSATLIANIDQFILEHGYGCDAELI 59
Query: 61 LLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVND 118
T ++ D+ W SL+ + ++E ++ + L G + V
Sbjct: 60 PGDTMPTGTSMIEKGQPDVAPELWSNSLKDALDKGVQEKRLRYAGKALVNGGEEGFWVPA 119
Query: 119 VGFALGI---------KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
K+ + + Y G ++ N + GF
Sbjct: 120 YLVKQYPEMATIEGVRKNASLFKHPEDPDTSAFYSCPAGWNCQISAGNLFNALELEDSGF 179
Query: 170 RLI-EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHY----------------- 211
++ S I + W P + ++
Sbjct: 180 TIVDPGSSAGLSGSIAKAYEREEAWFGYYWAPTAVLGKYDMVKVDFGSGVNEQEFLTCTT 239
Query: 212 --LPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDR 269
+ + + + V+T+ + + P F+ N ++ + +N+ D
Sbjct: 240 KEDCDSPKATMYPPSPVHTITTESFASRAPEAYDYFTKRGFTNDKMNSLLAWMEDNQADG 299
Query: 270 QFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ L P++ W+ ++ ++++E +
Sbjct: 300 EEASLHFLSEFPEVWHPWVS-------EEVAKKVEAEL 330
>gi|28868828|ref|NP_791447.1| glycine betaine-binding protein [Pseudomonas syringae pv. tomato
str. DC3000]
gi|213969565|ref|ZP_03397701.1| glycine betaine-binding protein [Pseudomonas syringae pv. tomato
T1]
gi|28852067|gb|AAO55142.1| glycine betaine-binding protein, putative [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213925661|gb|EEB59220.1| glycine betaine-binding protein [Pseudomonas syringae pv. tomato
T1]
Length = 328
Score = 178 bits (451), Expect = 9e-43, Method: Composition-based stats.
Identities = 59/291 (20%), Positives = 113/291 (38%), Gaps = 12/291 (4%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADT-GWTDIAATTAMTSVILEEILGYKTNI 59
M KIL L S A++ + GW+D ATT + S ++++ LGY +
Sbjct: 47 MRKILGAGAALVLAVSSTLAIAET-KTLTIGYVEGWSDSVATTFVASEVIKQKLGYDVKL 105
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ +A + ++++ +D+ + W P ++ + N + AK L V +
Sbjct: 106 QSVAAGIMWQAVATDKLDLMLSAWLPGTHGEYYTKYKD-QVVNYGPNFKDAKIGLIVPEY 164
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
A I+ K KI GI+ G+ + I + G++L +S
Sbjct: 165 VKAKSIEDL----KTDASFNKKITGIDAGSGVMLKTDQAIKDYGLD--GYKLQASSGAGM 218
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+++ R ++ V W PH + + + +L + + G +V V K P
Sbjct: 219 IAELTRAEKAQKAIVVTGWVPHWMFAKWKLRFLDDPKGVYG-AAETVDNVASLTLEKKAP 277
Query: 240 NISRLLKNIKF-SVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+ LK ++ S E+M I + + + + HPD + W
Sbjct: 278 EVVAFLKKFQWASKDEIGEVMLAI-QDGAKPEAAAKDWVAKHPDRVAAWTA 327
>gi|84385527|ref|ZP_00988558.1| hypothetical ABC transporter, substrate binding protein [Vibrio
splendidus 12B01]
gi|218709514|ref|YP_002417135.1| ABC transporter substrate-binding protein [Vibrio splendidus LGP32]
gi|84379507|gb|EAP96359.1| hypothetical ABC transporter, substrate binding protein [Vibrio
splendidus 12B01]
gi|218322533|emb|CAV18692.1| ABC transporter: substrate-binding protein precursor (BP) [Vibrio
splendidus LGP32]
Length = 330
Score = 178 bits (451), Expect = 9e-43, Method: Composition-based stats.
Identities = 46/338 (13%), Positives = 99/338 (29%), Gaps = 39/338 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M L+ +FL + S +A C V AD W + ILE G +
Sbjct: 1 MKYKLSS-VFLLVAAASGNANAGECGSVTIADMNWNSATLIANIDQFILEHGYGCDAELI 59
Query: 61 LLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVND 118
T ++ D+ W SL+ + ++E ++ + L G + V
Sbjct: 60 PGDTMPTGTSMIEKGQPDVAPELWSNSLKDALDKGVQEKRLRYAGKALVNGGEEGFWVPA 119
Query: 119 VGFALGI---------KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
K+ + + Y G ++ N + GF
Sbjct: 120 YLVKQYPEMATIEGVRKNASLFKHPEDPDTSAFYSCPAGWNCQISAGNLFNALELEDSGF 179
Query: 170 RLI-EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHY----------------- 211
++ S I + W P + ++
Sbjct: 180 TIVDPGSSAGLSGSIAKAYEREEAWFGYYWAPTAVLGKYDMVKVDFGSGVNEQEFLTCTT 239
Query: 212 --LPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDR 269
+ + + + V+T+ + + P F+ N ++ + +N+ D
Sbjct: 240 KEDCDSPKATMYPPSPVHTITTESFASRAPEAYDYFTKRGFTNDKMNSLLAWMEDNQADG 299
Query: 270 QFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ L P++ W+ Q+ ++++E +
Sbjct: 300 EEASLHFLSEFPEVWHPWVS-------QEVAKKVEAEL 330
>gi|238024037|ref|YP_002908269.1| proline/glycine betaine ABC transporter periplasmic protein
[Burkholderia glumae BGR1]
gi|237878702|gb|ACR31034.1| ABC-type proline/glycine betaine transport system, periplasmic
components [Burkholderia glumae BGR1]
Length = 287
Score = 178 bits (451), Expect = 9e-43, Method: Composition-based stats.
Identities = 63/296 (21%), Positives = 113/296 (38%), Gaps = 13/296 (4%)
Query: 1 MY---KILAVCLFLTTFSISYARDADSCTPVRFADT-GWTDIAATTAMTSVILEEILGYK 56
M K+ F ++ AD+ ++ GW D ATT + + I+E+ LGY
Sbjct: 1 MKFIGKLAWCGAFAALLTVCSPASADTKPTLKIGYVEGWDDSVATTNVAAQIIEKKLGYP 60
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ +A V ++ + +D + W P + + + N GAK L V
Sbjct: 61 VQLVPVAAGVMWQGVARGDLDATLSAWLPVTHGAYWD-QFKTKVVDLGTNYPGAKIGLIV 119
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
A KS D+ K + GA+I GI+ G ++ D I + L+ +S
Sbjct: 120 PTYVKA---KSIADLEGEKADFGARIVGIDAGAGVMRKTDDAIKAYGLG---YTLMASSG 173
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
A +++ R + P V W PH + + ++ +L +++ G E V +V
Sbjct: 174 SAMTAELARAENAKKPIVVTGWVPHWMFAKWDLRFLDDPKKVYGDAE-HVDSVANPALET 232
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVT 292
K + LK ++ + +M I + H + +K W G
Sbjct: 233 KAKPVVAFLKKFQWKPGELDSVMLAI-QGGAKPDVAAGKWIAAHGERVKAWTDGAQ 287
>gi|15888235|ref|NP_353916.1| ABC transporter, substrate binding protein [Agrobacterium
tumefaciens str. C58]
gi|15155887|gb|AAK86701.1| ABC transporter, substrate binding protein [Agrobacterium
tumefaciens str. C58]
Length = 336
Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats.
Identities = 52/343 (15%), Positives = 107/343 (31%), Gaps = 43/343 (12%)
Query: 1 MYKILAVCLFLTTFSISYARDA-----DSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M K+LA + +T F + ++C + A+ W + I+E
Sbjct: 1 MKKLLASTILVTGFITAAGAANSANAAETCGNITIAEMNWASAGVAAYVDKFIMENGYDC 60
Query: 56 KTNIKLLAVPVTFR-SLKNKGIDIFMGYWYPSLEKFIAPYLEEGS-IKLVAENLQGAKYM 113
N+ TF + D+ W +L +++G+ I+ V +G
Sbjct: 61 TVNVISGDTTPTFTSMNEKGQPDMAPEMWVNTLGTPYEEAVKKGNLIQEVKILSEGGVEG 120
Query: 114 LAVNDVGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKF 164
+ +K + + ++G PG ++ K
Sbjct: 121 WWIPKYLADEHPDIKTVEDALKHPELFPAPEDASKGAVFGCPPGWGCQPTTANLFKARKA 180
Query: 165 SLKGFRLIE-ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG-------- 215
KGF LI+ S I + W P I ++ L G
Sbjct: 181 DEKGFALIDTGSAAGLDGSISNAYEKKQGWLGYYWSPTAILGKYDMVKLDDGVALDREAY 240
Query: 216 -----------EEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILN 264
+ + + A V+TVV D+ +K ++ ++ A ++ + +
Sbjct: 241 DTCIAKPDCADPKPNAYPVAEVFTVVTKDFAEKAGPSIDYIRKRQWDNATVAGVLAWMDD 300
Query: 265 NKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
N+ + L H D+ W+ + + +++ M
Sbjct: 301 NQGTNEDGAEYFLENHEDIWTKWVS-------PEVAEKIKASM 336
>gi|297582678|ref|YP_003698458.1| glycine betaine ABC transporter substrate-binding protein [Bacillus
selenitireducens MLS10]
gi|297141135|gb|ADH97892.1| Substrate-binding region of ABC-type glycine betaine transport
system [Bacillus selenitireducens MLS10]
Length = 320
Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats.
Identities = 65/274 (23%), Positives = 107/274 (39%), Gaps = 9/274 (3%)
Query: 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDI 78
+ W A+T + + +LE GY I + + ++S+ N D
Sbjct: 56 GAMVGEGKEIELVYVEWDSEIASTHVVANVLESQ-GYDVTITPIDNAIMWQSVANGEADG 114
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL 138
+ W P+ + E+ + + NL+GA L V + + I S D+ +Y+ EL
Sbjct: 115 MVAAWLPATHGDLFAEYED-DLVDLGVNLEGALVGLVVPEY---MTIDSIADLDQYEDEL 170
Query: 139 GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
G I GIEPG Q + + GF + +S A + + N P V W
Sbjct: 171 GGTITGIEPGAGVVQAAEASVEDYGLD--GFSVETSSSGAMATALGEAVGNEEPIVVTGW 228
Query: 199 EPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEM 258
PH S ++ YL E G E + T+VR + PN R+L ++ +
Sbjct: 229 TPHWKFSAYDLKYLEDPEGSFGEAE-VIQTMVRQGLEEDMPNAFRILDQFFWTTEDMESI 287
Query: 259 MKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVT 292
M I D + + + D++ WL GV
Sbjct: 288 MLEI-QEGTDPEDAAADWVEANQDVVDGWLEGVE 320
>gi|313902345|ref|ZP_07835749.1| Substrate-binding region of ABC-type glycine betaine transport
system [Thermaerobacter subterraneus DSM 13965]
gi|313467393|gb|EFR62903.1| Substrate-binding region of ABC-type glycine betaine transport
system [Thermaerobacter subterraneus DSM 13965]
Length = 372
Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats.
Identities = 45/307 (14%), Positives = 89/307 (28%), Gaps = 28/307 (9%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWY 84
+ F D W + + I+E GY + K + L++ + I M W
Sbjct: 67 KPTLVFGDFSWDSVQVHNRIAGFIIEHGYGYPVDYKFGDTIPILQGLQDGSVHITMEMWP 126
Query: 85 PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG-----------FALGIKSYQDIAK 133
++ + L+ G + + +N + V A ++S QD+ +
Sbjct: 127 DNIREAWQKALDSGKVLDLGQNYPESPQGWYVPAYVIKGDPERGIEPMAPDLRSVQDLER 186
Query: 134 YKKELGA-------KIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRD 186
Y + + Y G + + SE + I
Sbjct: 187 YWQLFEDPSEPGKGRFYNCPTGWVCSDINAQKLKAYGLDDHFTAFNPGSEAGLNTSITTA 246
Query: 187 QRNNIPAVFLSWEPHPINSDLNIHYLPGGE---------EISGFGEASVYTVVRSDYLDK 237
R P V WEP I + L + + + V S D
Sbjct: 247 YRQGKPWVGYYWEPTWITGKYELIRLEEPAYSEECWNSGKACAYPPSQVLVAANSRLQDM 306
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQ 297
P++ LK + ++ + + D L+T+ D + W+ +
Sbjct: 307 APDVVEFLKKYETTLDQTAAALAYMEEQGGDPAGAAHWFLKTYHD-WEQWVPAEVHQRVK 365
Query: 298 DPSRQLE 304
++
Sbjct: 366 QALEEVN 372
>gi|90418106|ref|ZP_01226018.1| periplasmic substrate-binding protein, ABC-type proline/glycine
betaine transporter [Aurantimonas manganoxydans
SI85-9A1]
gi|90337778|gb|EAS51429.1| periplasmic substrate-binding protein, ABC-type proline/glycine
betaine transporter [Aurantimonas manganoxydans
SI85-9A1]
Length = 332
Score = 178 bits (450), Expect = 1e-42, Method: Composition-based stats.
Identities = 54/339 (15%), Positives = 105/339 (30%), Gaps = 39/339 (11%)
Query: 1 MYKILAV-CLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M +LA CL F S A + ++ W A+ +ILEE G +
Sbjct: 1 MKFLLASTCLAAALFGFSATASAQENCELSVSNMNWASAEVLAAIDKIILEEGYGCTVRL 60
Query: 60 KLLAVPVTF-RSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVN 117
TF + + D+ W I EEG++ AE L G + V
Sbjct: 61 LPGDTMPTFASMTEKQEPDVAPEMWVNQFRDQIDKAAEEGTVVFGAEVLSDGGEEGWWVP 120
Query: 118 DVGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
++ + + +Y G ++ KG
Sbjct: 121 TYFAEAHPEIKTVGDALEHPELFPANEDPSKGAVYNCPAGWGCQITTANLFKAYDGEEKG 180
Query: 169 FRLIE-ASELASFSQIRRDQRNNIPAVFLSWEPHPI-------------------NSDLN 208
F LI+ S I + N P + W P I ++
Sbjct: 181 FTLIDTGSAAGLDGSIAKAYENKEPWLGYYWAPTAILGKYPMKKLPFDAEHDAKEWAECT 240
Query: 209 IHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQD 268
+I+ + ++ V+TV+ ++ P ++ L + N+++ +
Sbjct: 241 TQVDCAEPKINAWTKSEVFTVLTPKVQEQSPEVAEYLNTRAWGNDTVNKLLAWKEEQQAT 300
Query: 269 RQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ L +P+L W+ +D + +++ +
Sbjct: 301 GEDTAYYFLENNPELWTGWVS-------EDAAEKIKSAL 332
>gi|218886145|ref|YP_002435466.1| glycine/betaine ABC transporter substrate-binding protein
[Desulfovibrio vulgaris str. 'Miyazaki F']
gi|218757099|gb|ACL07998.1| Substrate-binding region of ABC-type glycine betaine transport
system [Desulfovibrio vulgaris str. 'Miyazaki F']
Length = 287
Score = 178 bits (450), Expect = 1e-42, Method: Composition-based stats.
Identities = 59/292 (20%), Positives = 116/292 (39%), Gaps = 11/292 (3%)
Query: 1 MYKILAVCLFLTTFSISYARDAD---SCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M K+L + + + + A PVR A W A+T + ++E+ LG K
Sbjct: 1 MKKVLLMTMAVLLLAAPALAAAPMATDGKPVRLAYVEWDCATASTHLAKAVIEDSLGRKV 60
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+ ++ + ++ +D + W P + EG ++ + + GA+ AV
Sbjct: 61 EVLPVSAAAMWMAVATGDVDGMVTAWLPVTHGDYLKKV-EGKVQDLGPLVGGARLGWAVP 119
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
D +KS +++ + K+ GI+PG+ + ++ + L+E S
Sbjct: 120 DYVP---LKSIEELKVNADKFKGKVIGIDPGSGLMKLSEKAMHEYGLNK--LTLVEGSGA 174
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDK 237
+ + R V +W PH + +HYL +++ G E ++TVVR+
Sbjct: 175 TMTAALDDAIRRKEWIVVTAWSPHWMFGRWKLHYLDDPKKVLGE-EERIHTVVRNGLDKD 233
Query: 238 CPNISRLLKNIKF-SVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
P + L ++ +M D R ++ HP+L++ WL
Sbjct: 234 MPEVYAFLDRFRYADANQLETLMAWNQEKGADLMANARRFMKEHPELVREWL 285
>gi|325292271|ref|YP_004278135.1| glycine betaine-binding periplasmic protein [Agrobacterium sp.
H13-3]
gi|325060124|gb|ADY63815.1| Glycine betaine-binding periplasmic protein [Agrobacterium sp.
H13-3]
Length = 336
Score = 178 bits (450), Expect = 1e-42, Method: Composition-based stats.
Identities = 51/343 (14%), Positives = 109/343 (31%), Gaps = 43/343 (12%)
Query: 1 MYKILAVCLFLTTFSISYARDA-----DSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M K+LA + +T F+I+ ++C V A+ W + I+E
Sbjct: 1 MKKLLASTILVTGFTIAAGAANSANAAETCGSVTIAEMNWASAGVAAYVDKFIMENGYDC 60
Query: 56 KTNIKLLAVPVTFR-SLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYM 113
N+ TF + D+ W +L +++G++ ++ L +G
Sbjct: 61 TVNVISGDTTPTFTSMNEKGQPDMAPEMWVNTLGAPYEDAVKKGNLIQESKILSEGGVEG 120
Query: 114 LAVNDVGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKF 164
+ +K + + ++G PG ++ K
Sbjct: 121 WWIPKYLADEHPDIKTVEDALKHPELFPAPEDASKGAVFGCPPGWGCQPTTANLFKARKA 180
Query: 165 SLKGFRLIE-ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG-------- 215
KGF LI+ S I + W P I ++ L G
Sbjct: 181 DEKGFALIDTGSAAGLDGSISNAYEKKQGWLGYYWSPTAILGKYDMVKLDDGVALDREAY 240
Query: 216 -----------EEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILN 264
+ + + A V+TVV D+ +K ++ ++ +++ +
Sbjct: 241 DNCIAKPDCADPKPNAYPVAEVFTVVTKDFAEKAGPSIDYIRERQWDNETVAKVLAWMDE 300
Query: 265 NKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
N+ + L + D+ W+ + + +++ M
Sbjct: 301 NQGTNEDGAEYFLENNEDIWTKWVS-------PEVAEKIKASM 336
>gi|70729100|ref|YP_258836.1| glycine betaine/L-proline ABC transporter glycine
betaine/L-proline-binding/permease [Pseudomonas
fluorescens Pf-5]
gi|68343399|gb|AAY91005.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding/permease protein [Pseudomonas
fluorescens Pf-5]
Length = 283
Score = 178 bits (450), Expect = 1e-42, Method: Composition-based stats.
Identities = 54/291 (18%), Positives = 107/291 (36%), Gaps = 13/291 (4%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNI 59
M ++L L S ADS + W+D ATT + + ++++ LGY +
Sbjct: 3 MRRLLGAGAALVLAISSTLASADS-KTLSIGYVDGWSDSVATTHVAAEVIKQKLGYDVKL 61
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ +A + ++ + +D + W P + + N + AK L V +
Sbjct: 62 QAVATGIMWQGVATGKLDAMLSAWLPVTHGEYW-AKNKDKVVDYGPNFKDAKIGLIVPEY 120
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
A I+ K KI GI+ G+ + I + ++L +S A
Sbjct: 121 VKAKSIEDL----KTDTTFKNKIVGIDAGSGVMLKTDQAIKDYGLD---YKLQASSGAAM 173
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+++ R + W PH + + + +L + + G +V ++ K P
Sbjct: 174 IAELTRAEEKQDSIAVTGWVPHWMFAKWKLRFLEDPKGVYG-AAETVNSIGSKGLEKKAP 232
Query: 240 NISRLLKNIKF-SVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
++ LK ++ S E+M I + + HP+ + W
Sbjct: 233 EVAAFLKKFQWASKDEIGEVMLAI-QEGAKPDVAAKDWVSKHPERVAEWTA 282
>gi|23098456|ref|NP_691922.1| glycine betaine ABC transporter substrate-binding protein
[Oceanobacillus iheyensis HTE831]
gi|22776682|dbj|BAC12957.1| glycine betaine ABC transporter substrate-binding protein
[Oceanobacillus iheyensis HTE831]
Length = 288
Score = 178 bits (450), Expect = 1e-42, Method: Composition-based stats.
Identities = 65/297 (21%), Positives = 121/297 (40%), Gaps = 19/297 (6%)
Query: 1 MYKILAVCLFLTTFSISYARDA--------DSCTPVRFADTGWTDIAATTAMTSVILEEI 52
M K V T ++ + +S + A T WT T + +I+E+
Sbjct: 1 MKKFTIVLSLFTLLFLAACGSSNEESTDASESKGTINLAVTPWTSTVPPTKIARIIIED- 59
Query: 53 LGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKY 112
+GY+ V TF L +D +M W P+ E + Y + ++ V + A
Sbjct: 60 MGYEVEETQADVSSTFVGLSRGDLDAYMDSWMPAHENQMEKYSDS--VEKVTTSYDNANT 117
Query: 113 MLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
L + GI D+ + + G KIYGIE G + + ++I L L+
Sbjct: 118 GLTIPSNLE--GINKVSDLKGKEDQFGNKIYGIEEGAGATEMMRELIEEADLDL---ELV 172
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRS 232
+SE +Q++R ++ P +F W PH + + +I L ++ ++V + +
Sbjct: 173 PSSEGGMLAQVQRKISSDEPVIFYGWRPHSMFNKFDIKVLEDDYKVFT--PSTVNVLANN 230
Query: 233 DYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+K P++ L+N S+ EM+ I + D + V + + + D + L
Sbjct: 231 GLKEKAPDVYAFLQNWNISIDEVEEMITKI-EDGADEREVAQEWIDNNQDKVNKMLE 286
>gi|328957270|ref|YP_004374656.1| glycine betaine-binding protein [Carnobacterium sp. 17-4]
gi|328673594|gb|AEB29640.1| glycine betaine-binding protein [Carnobacterium sp. 17-4]
Length = 284
Score = 178 bits (450), Expect = 1e-42, Method: Composition-based stats.
Identities = 56/273 (20%), Positives = 102/273 (37%), Gaps = 11/273 (4%)
Query: 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDI 78
+ + + W A+T + +LE+ LGY + L V ++++ + D
Sbjct: 21 SATVGKGQEIELSYVEWDTEVASTNVIGKVLED-LGYDVKLTPLDNAVMWQAVASGDADA 79
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL 138
+ W P+ + + + NL+GA L V + IA K E
Sbjct: 80 MVAAWLPATHGSQFEEYGD-QMVDLGPNLEGALVGLVVPEYM------DVDSIADLKDEA 132
Query: 139 GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
I GIEPG + + +L + L +S A + + +N V W
Sbjct: 133 AMTITGIEPGAGVVAATEKSLEDYD-NLSEWDLETSSSGAMTVALGQAIQNEEDIVITGW 191
Query: 199 EPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEM 258
PH + + ++ YL E G E ++ T+ R + P ++L ++ +
Sbjct: 192 SPHWMFASYDLKYLEDPENSFGESE-TINTMAREGLDEDMPEAYQVLDQFNWTTEEMESI 250
Query: 259 MKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGV 291
M I +D + T + +PD + W GV
Sbjct: 251 MLDIS-EGEDPEDAAETWIEENPDRVAEWTEGV 282
>gi|163853135|ref|YP_001641178.1| substrate-binding region of ABC-type glycine betaine transport
system [Methylobacterium extorquens PA1]
gi|163664740|gb|ABY32107.1| Substrate-binding region of ABC-type glycine betaine transport
system [Methylobacterium extorquens PA1]
Length = 278
Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats.
Identities = 58/283 (20%), Positives = 109/283 (38%), Gaps = 9/283 (3%)
Query: 7 VCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPV 66
+ + +++ + VR A W D T + ++LEE GY+ LA
Sbjct: 5 ILGVIACLALAQTPAEAAGKQVRLAYVEWADAVVATNILKLVLEEK-GYQVKTIPLAAAA 63
Query: 67 TFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIK 126
++S+ D + W P + L + I L+ N+ GA+ AV +
Sbjct: 64 MWQSVATGDADASVAAWLPVTQGAYYEKL-KNRIDLIGPNVTGARIGWAVP---ATSSLN 119
Query: 127 SYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRD 186
S +D+A E+ K+ GI+PG + I +L++ S+ S ++
Sbjct: 120 SIEDLATKASEVDGKVIGIDPGAGVMKSSEAAIKAYGL---KVKLLDGSDATMTSALKDA 176
Query: 187 QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLK 246
R V +W PH + + ++ YL ++ G E+ V T+ R D P + +L+
Sbjct: 177 VRQKKDVVVTAWTPHWMFARYDLKYLDDPKKSFGEAES-VNTLARKGLKDDLPEVYAILQ 235
Query: 247 NIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
K ++ E +M + + + + WL
Sbjct: 236 KFKLTIKDEEAVMAENEEKGAKPEATAAKWIAQNRATVDGWLK 278
>gi|149376432|ref|ZP_01894194.1| glycine betaine/proline ABC transporter, periplasmic glycine
betaine/proline-binding protein [Marinobacter algicola
DG893]
gi|149359273|gb|EDM47735.1| glycine betaine/proline ABC transporter, periplasmic glycine
betaine/proline-binding protein [Marinobacter algicola
DG893]
Length = 310
Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats.
Identities = 44/297 (14%), Positives = 89/297 (29%), Gaps = 22/297 (7%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV-PVTFRSLKN 73
A C V + GW T++ I+E+ G + P +N
Sbjct: 1 MSVPALAQADCGEVSITEMGWASNTVVTSVAKFIMEQGYGCDVTVVPSDTVPAVTSVAEN 60
Query: 74 KGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQ-GAKYMLAVNDVGFA--LGIKSYQD 130
DI W S + E+G I+ + + L+ G + + + +
Sbjct: 61 GEPDIVTELWLNSAGEAYLELEEQGKIERLTKVLEPGGVEGWWIPTYLAEKHPELTTIEG 120
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR-LIEASELASFSQIRRDQRN 189
+ + + + G ++I G S S + ++
Sbjct: 121 VMANPELVENRFNNCPSGWGCRVVSDNLIRALDLESSGIEVFNHGSGETLASSMASAVQS 180
Query: 190 NIPAVFLSWEPHPINSDLNIH-----------------YLPGGEEISGFGEASVYTVVRS 232
P W P ++ +S F A+V T V +
Sbjct: 181 EEPWFGYYWGPTVPLGKFDMTRVELGDYKPEVHTRNQTQDADNPGVSEFPAATVLTSVTT 240
Query: 233 DYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
D+ D+ P ++ +L + F + ++ + +N + L + D +WL
Sbjct: 241 DFKDREPEVAEMLSKLTFKTDTMSALLAWMDSNNASAEEAAVYFLSNNSDEWSSWLN 297
>gi|330819882|ref|YP_004348744.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia gladioli BSR3]
gi|327371877|gb|AEA63232.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia gladioli BSR3]
Length = 288
Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats.
Identities = 57/286 (19%), Positives = 110/286 (38%), Gaps = 10/286 (3%)
Query: 8 CLFLTTFSISYARDADSCTPVRFADT-GWTDIAATTAMTSVILEEILGYKTNIKLLAVPV 66
+++ A AD+ ++ GW D T+ + + I+E+ LGY + +A V
Sbjct: 12 AFAALLTAVAPAAVADTKPTIKIGYVEGWDDSVGTSNVAAQIIEKKLGYPVQLVPVAAGV 71
Query: 67 TFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIK 126
++ + +D + W P + + + N GAK L V A K
Sbjct: 72 MWQGVARGDLDATLSAWLPVTHGAYWD-QFKSKVVDLGVNYPGAKIGLIVPTYVKA---K 127
Query: 127 SYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRD 186
S D+ K + +I GI+ G ++ D I + L+ +S A +++ R
Sbjct: 128 SIADLEGEKADFAGRIVGIDAGAGVMRKTDDAIKAYGL---SYNLMASSGSAMTAELARA 184
Query: 187 QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLK 246
+ P + W PH + + ++ +L +++ G E V +V + K + LK
Sbjct: 185 ENAKKPIIVTGWVPHWMFAKWDLRFLDDPKKVFGEAE-HVDSVANPNLETKAKPVVAFLK 243
Query: 247 NIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVT 292
++ + +M I + H D +K+W G
Sbjct: 244 KFQWKPGELDAVMLAI-QGGAKPDAAAEQWISQHGDRVKSWTDGAQ 288
>gi|299538417|ref|ZP_07051700.1| glycine betaine-binding protein precursor [Lysinibacillus
fusiformis ZC1]
gi|298726004|gb|EFI66596.1| glycine betaine-binding protein precursor [Lysinibacillus
fusiformis ZC1]
Length = 294
Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats.
Identities = 58/304 (19%), Positives = 105/304 (34%), Gaps = 23/304 (7%)
Query: 1 MY-KILAVCLFLTTFSISYAR-----------DADSCTPVRFADTGWTDIAATTAMTSVI 48
M K L+ A V A W A+T + +
Sbjct: 1 MKLKTLSKLGMALGLGFMLAACSGGDSGSSSGKNSDSKEVNLAYVEWDTEIASTNVVGQV 60
Query: 49 LEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQ 108
LE+ LGY + L + + ++ D + W P + + + ENL
Sbjct: 61 LED-LGYDVTLTPLDNAIMWEAVSKGEADGMVAAWLPHTHASQYEKY-KADLDELGENLA 118
Query: 109 GAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
GAK L V + I E I GIEPG + +L
Sbjct: 119 GAKIGLVVPSYM------NVNSIEDLSNEADHTITGIEPGAGITAATEKALEEYD-NLAD 171
Query: 169 FRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYT 228
+ I +S A + + + ++ + W PH + ++ YL + + G GE ++ T
Sbjct: 172 WNFITSSSGAMTTALSKALKDKEEIIVTGWSPHWKFAKYDLKYLEDPKGVYG-GEETINT 230
Query: 229 VVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
VR + P + +L N ++ +M ++ + +D + + + +PD + W
Sbjct: 231 FVRKGLKEDLPAVYSVLDNFHWTAEDLESVMLEVM-DGKDPKDAAKEWVDANPDKVAEWT 289
Query: 289 IGVT 292
V
Sbjct: 290 KDVK 293
>gi|218531940|ref|YP_002422756.1| substrate-binding region of ABC-type glycine betaine transporter
[Methylobacterium chloromethanicum CM4]
gi|254563045|ref|YP_003070140.1| glycine/betaine/proline ABC transporter periplasmic
substrate-binding protein [Methylobacterium extorquens
DM4]
gi|218524243|gb|ACK84828.1| Substrate-binding region of ABC-type glycine betaine transport
system [Methylobacterium chloromethanicum CM4]
gi|254270323|emb|CAX26319.1| glycine/betaine/proline transporter, Substrate-binding periplasmic
component of ABC transporter [Methylobacterium
extorquens DM4]
Length = 278
Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats.
Identities = 58/283 (20%), Positives = 109/283 (38%), Gaps = 9/283 (3%)
Query: 7 VCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPV 66
+ + +++ + VR A W D T + ++LEE GY+ LA
Sbjct: 5 ILGVIACLALAQTPAEAAGKQVRLAYVEWADAVVATNILKLVLEEK-GYQVKTIPLAAAA 63
Query: 67 TFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIK 126
++S+ D + W P + L + I L+ N+ GA+ AV +
Sbjct: 64 MWQSVATGDADASVAAWLPVTQGAYYEKL-KNRIDLIGPNVTGARIGWAVP---ATSPLN 119
Query: 127 SYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRD 186
S +D+A E+ K+ GI+PG + I +L++ S+ S ++
Sbjct: 120 SIEDLATKASEVDGKVIGIDPGAGVMKSSEAAIKAYGL---KVKLLDGSDATMTSALKDA 176
Query: 187 QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLK 246
R V +W PH + + ++ YL ++ G E+ V T+ R D P + +L+
Sbjct: 177 VRQKKDVVVTAWTPHWMFARYDLKYLADPKKSFGEAES-VNTLARKGLKDDLPEVYAILQ 235
Query: 247 NIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
K ++ E +M + + + + WL
Sbjct: 236 KFKLTIKDEEAVMAENEEKGAKPEATAAKWIAQNRATVDGWLK 278
>gi|228965726|ref|ZP_04126806.1| Glycine betaine-binding protein [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228793985|gb|EEM41508.1| Glycine betaine-binding protein [Bacillus thuringiensis serovar
sotto str. T04001]
Length = 279
Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats.
Identities = 68/281 (24%), Positives = 120/281 (42%), Gaps = 12/281 (4%)
Query: 2 YKILAVCLFL---TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
KI +CL L F+ A +A+S ++ T W + AT M V+LEE GYK
Sbjct: 3 KKIWFICLALFITMIFTSCNATNANSKGKIKLGVTSWKENIATANMWKVLLEEK-GYKVE 61
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ L + + +D + W P +K + ++ I L ++ +G L V
Sbjct: 62 LMYLEKAAIWTGVARGDVDANLEVWLPVTDKPLNDRYKD-DIVLKSKWYEGTGLGLVVPS 120
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
I S +D+ +K EL KI GIEPG+ + L +L+++SE A
Sbjct: 121 YV--KNINSIEDLNAHKDELDNKIVGIEPGSSLMNLTNKAMKEYDIKL---KLVQSSEAA 175
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
S++++ P W PH S+ ++ YL +++ G + +Y VR +
Sbjct: 176 MMSELKKAYTKKKPIAVTLWNPHWGFSEFDLKYLKDPKKVYGEKD-DIYYSVRKGFEKDH 234
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
P++ + K + +M +LN +D + R ++
Sbjct: 235 PDVIKYFDKWKMTDEQLGTLMV-MLNKTKDPEEAARKWIKK 274
>gi|302391227|ref|YP_003827047.1| glycine/betaine ABC transporter substrate-binding protein
[Acetohalobium arabaticum DSM 5501]
gi|302203304|gb|ADL11982.1| Substrate-binding region of ABC-type glycine betaine transport
system [Acetohalobium arabaticum DSM 5501]
Length = 280
Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats.
Identities = 55/268 (20%), Positives = 111/268 (41%), Gaps = 8/268 (2%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGY 82
+ V+ W A+T + +LE +GY+ + F+ N +D F+
Sbjct: 15 EQKGKVKIGYVQWASAEASTYVVREVLE-RMGYEVETPVTQSGPMFQGTANGELDAFVCA 73
Query: 83 WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKI 142
W P+ +K + + + N A+ L V + A + ++ KY + I
Sbjct: 74 WLPNTDKTRWEEYGD-ELVDLGSNYDSAQIGLVVPEYVKA---DTIPELKKYADKFNKAI 129
Query: 143 YGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP 202
GI+PG I + + LK + L +S A +++ + +N+ V W+PH
Sbjct: 130 VGIDPGATEMTVIENKTMPK-YGLKDWELTSSSGPAMTAELGKAIKNDEWIVVAGWKPHW 188
Query: 203 INSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI 262
S ++ +L E G GE + ++ R + + P +++ L+N K + +M I
Sbjct: 189 KWSKWDLKFLEDPELTMGEGEY-IKSIGRPEIKEDMPTVAKFLQNYKLTTEQLGSIMLKI 247
Query: 263 LNNKQDRQFVGRTMLRTHPDLLKNWLIG 290
N + + + +P+ + +W+ G
Sbjct: 248 -QNGMEPKKAAEEFVSNNPEAVNSWVPG 274
>gi|228997710|ref|ZP_04157317.1| Glycine betaine-binding protein [Bacillus mycoides Rock3-17]
gi|228762054|gb|EEM10993.1| Glycine betaine-binding protein [Bacillus mycoides Rock3-17]
Length = 270
Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats.
Identities = 64/278 (23%), Positives = 114/278 (41%), Gaps = 9/278 (3%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSL 71
+ A +A++ ++ T W + A M V+LEE GYK + L + +
Sbjct: 1 MIITSCNATNANTKGKIKLGVTSWKENIAAANMWKVLLEEK-GYKVELMYLEKAAIWTGV 59
Query: 72 KNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDI 131
+D + W P +K + + I L ++ +G L V I S +D+
Sbjct: 60 ARGDVDANLEVWLPVTDKPLNDRY-KNDIVLKSKWYEGTGLGLVVPSY--MKDINSIEDL 116
Query: 132 AKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI 191
+K EL KI GIEPG+ + L +L+++SE A S++++
Sbjct: 117 NTHKDELDNKIVGIEPGSSLMNLTDKAMKEYDIKL---KLVQSSEAAMMSELKKAYTQKK 173
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFS 251
P W PH S+ ++ YL +++ G + +Y VR + P I + K S
Sbjct: 174 PIAVTLWNPHWSFSEFDLKYLKDPKKVYGEKD-DIYYSVRKGFEKDYPEIVKYFDRWKMS 232
Query: 252 VALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+M +LN +D + R + + L+ W+
Sbjct: 233 DEQLGTLMV-MLNKTKDPEEAARKWIEKNQALVNEWIK 269
>gi|163760698|ref|ZP_02167778.1| ABC proline/glycine betaine transporter, periplasmic
substrate-binding protein [Hoeflea phototrophica DFL-43]
gi|162282020|gb|EDQ32311.1| ABC proline/glycine betaine transporter, periplasmic
substrate-binding protein [Hoeflea phototrophica DFL-43]
Length = 335
Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats.
Identities = 48/342 (14%), Positives = 99/342 (28%), Gaps = 42/342 (12%)
Query: 1 MYKILAVCLFLTTF----SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
M K+LA + + A C V A+ W + ++IL E G
Sbjct: 1 MKKLLASTVLAAGLMGFAGAAQAASHSECGTVTVANMNWASAEVLANIDNIILSEGYGCD 60
Query: 57 TNIKLLAVPVTFR-SLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYML 114
+ T ++ D+ W ++ + + +EEG + AE+L G
Sbjct: 61 VELVPGDTMPTLTSMMEKGEPDVAPEAWINAVREPLDKAVEEGRLVYAAESLSDGGVEGW 120
Query: 115 AVNDVGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFS 165
+ + + +Y G + +
Sbjct: 121 WIPKYIADANPDIKTIDDALARPDLFPAPEDPSKGAVYNCPSGWNCQISTANFFRAHDAE 180
Query: 166 LKGFRLIE-ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIH-------------- 210
KGF L++ S I + W P I + +
Sbjct: 181 EKGFVLVDSGSAAGLDGSIANAYNKEEGWLGYYWAPTAILGNYPMTLLGFNAEFDKESWD 240
Query: 211 -----YLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNN 265
+ + + ++ VYTVV +D+ + LK +S N ++ N
Sbjct: 241 GCIVDAECADPQKNAWPKSEVYTVVTADFAKRAGPAIDYLKGRAWSNETVNGLLAWKDKN 300
Query: 266 KQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ + L + D+ W+ + + +++ +
Sbjct: 301 QATGEDTAYYFLENNEDVWGKWVS-------PEAAEKIKAAL 335
>gi|229587924|ref|YP_002870043.1| putative histidine transporter substrate-binding protein
[Pseudomonas fluorescens SBW25]
gi|229359790|emb|CAY46640.1| putative histidine transport system, substrate-binding protein
[Pseudomonas fluorescens SBW25]
Length = 321
Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats.
Identities = 52/329 (15%), Positives = 110/329 (33%), Gaps = 32/329 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDAD----SCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
M+K L L S A S PV+FA W T + +LE+ K
Sbjct: 3 MHKTLLATLLSAGLLASAGAQAAGWCESGKPVKFAGLNWESGMLLTDILQTVLEKGYDCK 62
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
T+ +L + I +F W + + G + V + GA V
Sbjct: 63 TDSLPGNSITMENALSSNDIQVFAEEWV-GRSEVWNKAEKAGKVVGVGAPIVGAIEGWYV 121
Query: 117 NDVG-----------FALGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDM 158
A +K+ D+AKY + Y G +M
Sbjct: 122 PRYVIEGDAKRKLEPKAPDLKNIADLAKYASVFKDQEEPSKGRFYNCPAGWTCELDNSEM 181
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ + + A + + + P +F W P P+ +++ L +
Sbjct: 182 LKSYGLESTYTNFRPGTGPALDAAVLSSYKRGEPILFYYWSPTPLMGQVDLVKLEEKPGV 241
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLR 278
S+ + + ++ P + +L+ + + L N+ + + + + + + L+
Sbjct: 242 DKSV--SIKVGLSKAFHEQAPELVAVLEKVNLPIDLLNQNLGRMAKERIESPKLAKIFLK 299
Query: 279 THPDLLKNWLIGVTTFDGQDPSRQLERFM 307
HP++ W+ +D +++++ +
Sbjct: 300 EHPEVWHAWVS-------EDAAKKIDAAL 321
>gi|85704861|ref|ZP_01035962.1| amino acid ABC transporter, periplasmic amino acid-binding protein
[Roseovarius sp. 217]
gi|85670679|gb|EAQ25539.1| amino acid ABC transporter, periplasmic amino acid-binding protein
[Roseovarius sp. 217]
Length = 322
Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats.
Identities = 51/328 (15%), Positives = 91/328 (27%), Gaps = 28/328 (8%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M L F C V A+ W T ++ ++ + G +
Sbjct: 1 MKTTLIATAFAGLGLALPTAALADCGRVSIAEMNWASGQIITRISEFLMTQGYGCDVTVV 60
Query: 61 L-LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+N DI W S + E +K +G V D
Sbjct: 61 PSATTTAITSLAENNEPDIVPELWVNSAPAYFRLESEGRVVKAADVFAEGGSENWWVPDY 120
Query: 120 G--FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR-LIEASE 176
+ + + +G + + G ++I F+ G S
Sbjct: 121 LVEAHPELATIDGVLANPDLVGGRFHNCPDGWGCRIANDNLIKAFDFAGHGLEVFNHGSG 180
Query: 177 LASFSQIRRDQRNNIPAVFLSWEP-----------------HPINSDLNIHYLPGGEEIS 219
+ + N P W P P N IS
Sbjct: 181 DTLPASMAAAYDNREPWFGYYWGPTAVLGRYNMVAVDMGPHDPEIHACNQTQDCATPGIS 240
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+ A V TVV +D+ D+ P+I L+ NI F + ++ +N + L T
Sbjct: 241 SYPAAPVLTVVTADFADRNPDIFALVSNISFGTQELSNLLAWQADNSASAEEAAVHFLTT 300
Query: 280 HPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ + W+ + + +L +
Sbjct: 301 SQETWRGWIN-------EAAAEKLSAIL 321
>gi|239932299|ref|ZP_04689252.1| glycine betaine transport system permease protein [Streptomyces
ghanaensis ATCC 14672]
gi|291440664|ref|ZP_06580054.1| glycine betaine transport system permease protein [Streptomyces
ghanaensis ATCC 14672]
gi|291343559|gb|EFE70515.1| glycine betaine transport system permease protein [Streptomyces
ghanaensis ATCC 14672]
Length = 872
Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats.
Identities = 49/289 (16%), Positives = 106/289 (36%), Gaps = 7/289 (2%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNK 74
+ + ++ + W + A+T + ILE G++ K + +L
Sbjct: 328 TAADGKNVGDGKKITIGYIPWDEGVASTYLWKEILERR-GFEVEAKQFEAGPLYTALAQG 386
Query: 75 GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKY 134
ID W P+ + + ++ + L V + S +D+
Sbjct: 387 NIDFQTDAWLPTTHEPYWKKYGD-RLEDLGAWYDETSLELTVPAYMED--VDSLEDLKGK 443
Query: 135 KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAV 194
G +I GIE + + + ++++++S A ++++R P +
Sbjct: 444 ASLFGGEITGIESSAGMMGLLKSKVLGEYGLDREYKVVDSSTPAMLAELKRAYSKKEPVL 503
Query: 195 FLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVAL 254
W PH SD ++ L + G G+ V+T+ R + D P + + L++ +
Sbjct: 504 VTLWSPHWAYSDYDLKKLEDPKGAWGEGDG-VHTLSRKGFTDDHPLVGKWLEDFSMTEEQ 562
Query: 255 ENEMMKLILNNKQD-RQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQ 302
+ I + +Q R L +P+++ W V + G P+
Sbjct: 563 LTSLEAEINKAGKGRQQDAVRAWLEDNPEVVDQW-APVGSGSGATPAEA 610
Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats.
Identities = 54/272 (19%), Positives = 113/272 (41%), Gaps = 6/272 (2%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNK 74
S S A A++ P+ A W + A T + +LE GY N+K + V + L +
Sbjct: 601 SGSGATPAEAKRPLDVAWFPWDEDIAITYLWKNVLERR-GYTLNLKQMDVGPVYTGLASG 659
Query: 75 GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKY 134
+D+ W P +K + + + + +AV +KS +D+
Sbjct: 660 DLDLNFDAWLPHAQKNYWDK-SKDDLTDLGTWYEPTSLEIAVPSYV--KDVKSLEDLKGK 716
Query: 135 KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAV 194
G +I GIEPG + + + +++++ S A ++++R P
Sbjct: 717 ADLFGGRIIGIEPGTGVMNLLKSDVLPGYGLDEEYKVVDGSTPAMLAELKRAYAKKKPVA 776
Query: 195 FLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVAL 254
+ W PH ++ + L G+ + G G +++T+ + ++ P +++ +K + S
Sbjct: 777 VVLWSPHWAYAEYELTKLKDGKGLFGEG-NTIHTIASKKFPEQYPELTKWIKGFRMSEEE 835
Query: 255 ENEMMKLILNNKQD-RQFVGRTMLRTHPDLLK 285
+ + I + Q + L HPD+++
Sbjct: 836 LATLEREIKDRGQGHEEEAVAAWLEEHPDVVE 867
>gi|312959835|ref|ZP_07774351.1| glycine betaine/L-proline ABC transporter [Pseudomonas fluorescens
WH6]
gi|311286001|gb|EFQ64566.1| glycine betaine/L-proline ABC transporter [Pseudomonas fluorescens
WH6]
Length = 283
Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats.
Identities = 55/291 (18%), Positives = 108/291 (37%), Gaps = 13/291 (4%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNI 59
M ++L L S ADS + W+D ATT + + ++++ LGY +
Sbjct: 3 MRRLLGAAATLVVAMSSTLASADS-KTLSIGYVDGWSDSVATTHVAAEVIKQKLGYDVKL 61
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ +A + ++ + +D + W P ++ + N + AK L V +
Sbjct: 62 QAVATGIMWQGVATGKLDAMLSAWLPVTHGEYWTKNKD-KVVDYGPNFKDAKIGLIVPEY 120
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
A I+ K KI GI+ G+ + + I ++L +S A
Sbjct: 121 VKAKSIEDL----KTDTTFKNKIVGIDAGSGVMLKTDEAIKQYGLD---YKLQASSGAAM 173
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+++ R + W PH + + + +L + I G +V ++ K P
Sbjct: 174 IAELTRAEDKQESIAVTGWVPHWMFAKWKLRFLDDPKGIYG-AAETVNSIGSKGLEAKAP 232
Query: 240 NISRLLKNIKF-SVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
++ LK ++ S E+M I + + HP+ + W
Sbjct: 233 EVAAFLKKFQWASKDEIGEVMLAI-QEGAKPDAAAKDWVAKHPERVAEWTA 282
>gi|256831079|ref|YP_003159807.1| glycine betaine ABC transporter substrate-binding protein
[Desulfomicrobium baculatum DSM 4028]
gi|256580255|gb|ACU91391.1| Substrate-binding region of ABC-type glycine betaine transport
system [Desulfomicrobium baculatum DSM 4028]
Length = 279
Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats.
Identities = 61/288 (21%), Positives = 108/288 (37%), Gaps = 11/288 (3%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M KIL L + VR A W A+TA+ LEE +GY+
Sbjct: 1 MKKILLTIACLMLLIQPALA---AKGKVRLAYVEWDCATASTAVAQAALEE-MGYEVETL 56
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+A +++L +D + W P +++ ++ V+ GAK AV
Sbjct: 57 PVAAAAMWQALGTGDVDAMVTAWLPVTHADYYAKVKD-KVEKVSVVSGGAKLGWAVPAYV 115
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
I S +++ + G KI GI+PG + + + K L+E S
Sbjct: 116 ---TIDSIEELNANADKFGGKIIGIDPGAGLMKLSEQAMADYKLDK--LELMEGSGATMT 170
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ + +N V +W PH + + YL + + G GE + +VR P
Sbjct: 171 AALDNAIKNKEWVVVTAWSPHWMFGKWELKYLEDPKGVLG-GEEQIEAIVRKGLKKDMPE 229
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+ N K+ + +M+ + + L+ +P +K W+
Sbjct: 230 VHAFFSNFKWDSPAQLQMVMAWNQEGGSPEENAQRFLKEYPKTVKGWM 277
>gi|302518088|ref|ZP_07270430.1| glycine betaine ABC transport system permease [Streptomyces sp.
SPB78]
gi|302426983|gb|EFK98798.1| glycine betaine ABC transport system permease [Streptomyces sp.
SPB78]
Length = 1150
Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats.
Identities = 54/302 (17%), Positives = 110/302 (36%), Gaps = 17/302 (5%)
Query: 4 ILAVCLFLTTFSISYARDADS---------CTPVRFADTGWTDIAATTAMTSVILEEILG 54
++ + L + D V W + A+T + ILE+ G
Sbjct: 306 VVILALVAGGMGVFGGSDDAKTVDATDVGKGKTVSVGYIPWDEGVASTFLWKEILEQR-G 364
Query: 55 YKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
+K + K + + N +D W P+ + ++ + +
Sbjct: 365 FKVDAKQYEAGSLYTGMANGQVDFQTDSWLPTTHAQYWKKYGD-KLEDMGAWYGPTSLEI 423
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
AV G+KS D+ + E +I GIEP + D + + L +++I+
Sbjct: 424 AVPSYV--KGVKSTADLKGKESEFKNRIVGIEPSAGEMGLLKDKV-VKDYGLSKYKVIDG 480
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDY 234
S +++ R + P W PH ++ L + G G+ V+T+ R +
Sbjct: 481 STPGMLAELDRAYKKKEPIAVTLWSPHWAYDKYDMTKLSDPKGSWGKGD-EVHTLARKGF 539
Query: 235 LDKCPNISRLLKNIKFSVALENEMMKLILNNKQ-DRQFVGRTMLRTHPDLLKNWLIGVTT 293
P ++ LK+ K S + + I + + +Q ++ ++ +P ++ L V
Sbjct: 540 SKDFPEAAQWLKDFKLSEKQLSSLESEIQDAGKGKQQEAVKSWIKKNPGIVDK-LAPVQK 598
Query: 294 FD 295
D
Sbjct: 599 TD 600
Score = 169 bits (428), Expect = 5e-40, Method: Composition-based stats.
Identities = 51/281 (18%), Positives = 104/281 (37%), Gaps = 8/281 (2%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGY 82
V W + A++ + +LE G+K + K + + N +D
Sbjct: 604 GKGKTVNMGFIPWDEGIASSYLWKEVLERR-GFKVSAKQYEAGALYTGMANGQVDFETDS 662
Query: 83 WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKI 142
W P+ K + ++ + +AV G+KS D+ + E +I
Sbjct: 663 WLPNTHKQYWDKYGD-RLEDMGAWYGPTSLEIAVPSYV--KGVKSTADLKGRESEFKNRI 719
Query: 143 YGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP 202
GIEP + D + + L +++I+ S +++ R + P W PH
Sbjct: 720 VGIEPSAGEMGLLKDKV-VKDYGLSKYKVIDGSTPGMLAELDRAYKKKEPIAVTLWSPHW 778
Query: 203 INSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI 262
++ L + G G+ V+T+ R + D P +++ LK K S + + I
Sbjct: 779 AYDKYDMTKLTDPKGSWGKGD-EVHTLARKGFSDDFPEVAKWLKGFKLSEKQLSSLEGAI 837
Query: 263 LNNKQ-DRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQ 302
+ + +Q + ++ +P ++ L V +
Sbjct: 838 QDAGKGKQQQAVQGWIKDNPGIVDK-LAPVKGGSSASAAAV 877
Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats.
Identities = 48/282 (17%), Positives = 106/282 (37%), Gaps = 6/282 (2%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP 65
+ + A + + A W + A T + +LE+ GYK N+K V
Sbjct: 870 SSASAAAVDFKNGAGKDERDRAINVAWFPWEEDIAATYLWKHVLEDR-GYKMNLKQFEVG 928
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
+ ++ +D+ W P +K + + E +AV +
Sbjct: 929 PMYAAMSRNQLDVQFDGWLPYTQKNYWDKYGS-KLTKIGEWYSPTSLEIAVPSYV--KDV 985
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
KS D+ ++ GIEPG + + + + K +++++ S S+++R
Sbjct: 986 KSLADLKGKGGTFDGRVIGIEPGTATMDILKNKVLPSYGLDKEYKVVDGSTPGMLSELKR 1045
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
P + W PH + ++ L + G G+ + TV + ++ P +++ L
Sbjct: 1046 AYAKKEPIAVMLWSPHWAYNQYDLTKLKDPKGSFGKGD-RITTVASKQFPEQYPQLAKWL 1104
Query: 246 KNIKFSVALENEMMKLILNNKQDRQF-VGRTMLRTHPDLLKN 286
K+ K S + +E+ + + ++ +P ++
Sbjct: 1105 KDFKLSDSQLSELENELHKQGTGHEDEAVDNWVKKNPGIVDK 1146
>gi|262198631|ref|YP_003269840.1| substrate-binding region of ABC-type glycine betaine transporter
[Haliangium ochraceum DSM 14365]
gi|262081978|gb|ACY17947.1| Substrate-binding region of ABC-type glycine betaine transport
system [Haliangium ochraceum DSM 14365]
Length = 312
Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats.
Identities = 50/261 (19%), Positives = 102/261 (39%), Gaps = 8/261 (3%)
Query: 29 RFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLE 88
W + A T + V+LE+ +GY+ + V + S+ D FM W P+L
Sbjct: 56 NLVYVNWAEGIAYTHLAKVVLEDKMGYEVKLTAADVGPAYTSVAQGDQDAFMETWLPTLH 115
Query: 89 KFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPG 148
K EG + + +G + L V I ++ +K + KI GI+ G
Sbjct: 116 KDYIEK-FEGKLVDLGHVYEGTQSGLVVPAYVP---ITKISELKDHKDKFDGKITGIDAG 171
Query: 149 NEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLN 208
++I + F L+ +S A S ++ V W PH +
Sbjct: 172 AGIMNTTEEVIASYDLG---FTLLPSSGPAMTSALKNAIDKEEWIVVTGWRPHWKFGRWD 228
Query: 209 IHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILN-NKQ 267
+ +L E+ + E +++ R+ + P ++ L ++ + ++M + + +
Sbjct: 229 LKFLEQDEDKMVWKEGNIHITGRAGIKEDKPTLAAFLSSMMLTDEQLGDLMIKVNESDGK 288
Query: 268 DRQFVGRTMLRTHPDLLKNWL 288
D + V R + + ++ W+
Sbjct: 289 DVEDVARQWMADNEAVITAWV 309
>gi|170017667|ref|YP_001728586.1| ABC-type proline/glycine betaine transport system, permease
component [Leuconostoc citreum KM20]
gi|169804524|gb|ACA83142.1| ABC-type proline/glycine betaine transport system, permease
component [Leuconostoc citreum KM20]
Length = 568
Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats.
Identities = 59/283 (20%), Positives = 108/283 (38%), Gaps = 11/283 (3%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
V + + ++ V W A+T + + L++ GY + L
Sbjct: 295 TLVVMIGGGVVNAVTTKKETGQRVNLGYVEWDSEVASTNVLAESLKQH-GYNVTMTPLDN 353
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
V ++S+ N +D + W P K + + + ++ NL+GAK L V D
Sbjct: 354 AVLWQSVANGQVDASLSAWLPITHKTLYDK-FKNDVNVLGSNLKGAKTGLVVPDYM---- 408
Query: 125 IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
+ I + I GIEPG +++ +L G++L +S A +
Sbjct: 409 --NVNSIEDLTNQADKTITGIEPGAGEMVSAKKTLSSYA-NLNGWQLQGSSSGAMAIALD 465
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
+ + V W PH + S N+ YL + G GE+ + T R + P + ++
Sbjct: 466 KAYKAKKDIVVTGWSPHWMFSKYNLKYLADPKGTMGKGES-INTFTRKGLKKENPKLEKV 524
Query: 245 LKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
L +S +M I N + + L++H L +W
Sbjct: 525 LDKFHWSKDDMESVMLAI-QNGKSPKEAANNWLKSHQKLADSW 566
>gi|56962756|ref|YP_174482.1| glycine betaine ABC transporter substrate-binding protein [Bacillus
clausii KSM-K16]
gi|56908994|dbj|BAD63521.1| glycine betaine ABC transporter substrate-binding protein [Bacillus
clausii KSM-K16]
Length = 282
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 47/278 (16%), Positives = 101/278 (36%), Gaps = 11/278 (3%)
Query: 14 FSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKN 73
+ + + W A+ + + LE+ GY + + + + S+ +
Sbjct: 16 MMSACGAQGEEAKEIELVYVVWDSEIASNHVVKIALEQA-GYDVTLTSVEQGIMWSSVAD 74
Query: 74 KGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAK 133
D + W P K ++ I + NL+GA+ LAV I +
Sbjct: 75 GSADAHVAGWLPEDMKVHYEQHKD-DIIDLGANLEGAQTGLAVPTYME------IDSIEE 127
Query: 134 YKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPA 193
++ + I GI+ G + + L +S+ +++ P
Sbjct: 128 LSADVVSTITGIDAGAGVMMTTEEALREYGMDD--VTLSASSDAIMTAELGNRYAAQEPI 185
Query: 194 VFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVA 253
V +W+PH + ++ +L + I + T+VR+ ++ P R+L ++
Sbjct: 186 VITAWQPHWKFNSYDLKFLEDSKGIYE-ANGEIRTIVRAGLAEEKPEAYRILDQFYWTAD 244
Query: 254 LENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGV 291
NE+M + + + + + + D + WL GV
Sbjct: 245 DMNEVMLYMAKDGMEPEEAAEKWVNANQDKVDEWLKGV 282
>gi|153872725|ref|ZP_02001532.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding/permease protein [Beggiatoa
sp. PS]
gi|152070811|gb|EDN68470.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding/permease protein [Beggiatoa
sp. PS]
Length = 281
Score = 176 bits (447), Expect = 3e-42, Method: Composition-based stats.
Identities = 63/288 (21%), Positives = 120/288 (41%), Gaps = 11/288 (3%)
Query: 5 LAVCLFLTTFSISYARDADS---CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+ V L+LT I+ D+ V W A+T + V+LE+ LGY+ ++
Sbjct: 1 MIVSLWLTFGDIADNEQDDAQNHDRQVELVYVEWASEIASTYVVKVVLEQ-LGYEVDVIS 59
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
++ ++++ + D + W P+ + + +++ + NL+G K L V
Sbjct: 60 VSAAAMWQAVASGDADGHIAAWLPTTHAHYLNAV-KENLENLGPNLEGTKIGLVVPSYV- 117
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
+ S +++ KI GI+PG + ++ + K F+LIE S +
Sbjct: 118 --TVDSIEELNGQIDRFDGKIIGIDPGAGLMSKTEQVMEDYKLD--SFKLIEGSGATMTA 173
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNI 241
+ R V W PH + + YL + + G E + TVVR ++ P +
Sbjct: 174 ALAEAIRTQEWIVVAGWTPHWKFARWQLKYLKDPKNVYGQEEY-IGTVVRKGLKEEMPTV 232
Query: 242 SRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
RLL N ++ A ++M + + + + +PD +K WL
Sbjct: 233 YRLLDNFYWTAADMGQVMIMNQQKDTTPEENAKRWVDDNPDKVKKWLS 280
>gi|222148898|ref|YP_002549855.1| ABC transporter substrate binding protein [Agrobacterium vitis S4]
gi|221735884|gb|ACM36847.1| ABC transporter substrate binding protein [Agrobacterium vitis S4]
Length = 332
Score = 176 bits (447), Expect = 3e-42, Method: Composition-based stats.
Identities = 47/339 (13%), Positives = 104/339 (30%), Gaps = 39/339 (11%)
Query: 1 MYKILAVCLFLTTF-SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M ++ + ++ + +A C V A+ W + +ILE G N+
Sbjct: 1 MRTLIVSTILAAGLYGMAGSAEAADCGSVSIAEMNWASAGVAANVDKIILESGYGCSVNL 60
Query: 60 KLLAVPVTFR-SLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVN 117
TF + D+ W +++K +A +++G + A L G V
Sbjct: 61 VTGDTMPTFTSMNEKGEPDLAPELWVNTIQKPLAEAVKDGRLLKAARILKDGGVEGWWVP 120
Query: 118 DVGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
+K + + + G ++ K G
Sbjct: 121 KYITDEHPDIKTVQDALKHPELFPAPEDPSKGAVTNCPSGWACQVTTENIYKALKGDDAG 180
Query: 169 FRLIE-ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIH----------------- 210
F+L++ S A I + W P I ++
Sbjct: 181 FQLVDSGSSAALDGSIANAIEKRQGWLGYYWAPTAILGKYDMVKLGMDTPFDKAEWDRCT 240
Query: 211 --YLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQD 268
++ + VY+VV ++ +K + ++ +++ + N+ D
Sbjct: 241 SVADCADPRVNDYPVTDVYSVVTKNFAEKAGVTMDYVGKRQWDNETIGKVLAWMSENQAD 300
Query: 269 RQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
L+T+PD+ W+ D + +++ +
Sbjct: 301 NADAAEYFLKTYPDVWTQWVS-------PDVAEKVKAAL 332
>gi|319944461|ref|ZP_08018735.1| amino acid ABC superfamily ATP binding cassette transporter,
binding protein [Lautropia mirabilis ATCC 51599]
gi|319742422|gb|EFV94835.1| amino acid ABC superfamily ATP binding cassette transporter,
binding protein [Lautropia mirabilis ATCC 51599]
Length = 339
Score = 176 bits (447), Expect = 3e-42, Method: Composition-based stats.
Identities = 53/319 (16%), Positives = 104/319 (32%), Gaps = 38/319 (11%)
Query: 19 ARDADSCT---PVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKG 75
A D +C PVRF W T + ILE+ G +T++ ++
Sbjct: 29 AADTPACEVSHPVRFGGMNWESNLVLTEIERRILEKGYGCQTDVLPTETLSALAAMGRGD 88
Query: 76 IDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA--LGIKSYQDIAK 133
+D+ W S+ A + G +K + G + +KS +D+ +
Sbjct: 89 LDVISEIWQNSIADPWAKAVATGKVKSIGTVYLGG-EGWYIPRYVAERLPELKSIEDLPR 147
Query: 134 YKKELGA-------KIYGIEPGNEGNQRILDMINN-NKFSLKGFRLIEASELASFSQIRR 185
+K E + YG G + K + + A + I
Sbjct: 148 FKDEFADNEDPGKGRFYGCPVGWGCEVVATQIFKADKKLAEAFNLFAPGTGAAQKAAITS 207
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE-----------------ISGFGEASVYT 228
+ VF W P P+ + +++ L + + E V T
Sbjct: 208 AYKRKRNVVFYYWSPTPMVASMDLVRLKFPPYDKAKHQCLTDADCANPEVVDYPENPVLT 267
Query: 229 VVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
V + + ++ P + L + V + N M+ + + V L+ H D+ W+
Sbjct: 268 GVNTKFSEQAPRTTEFLSKVSLPVDVVNGMLAEMDAESLEVTDVADRFLKNHADVWTKWV 327
Query: 289 IGVTTFDGQDPSRQLERFM 307
D + +++ +
Sbjct: 328 P-------ADVAERVKAGL 339
>gi|121610967|ref|YP_998774.1| glycine betaine ABC transporter substrate-binding protein
[Verminephrobacter eiseniae EF01-2]
gi|121555607|gb|ABM59756.1| Substrate-binding region of ABC-type glycine betaine transport
system [Verminephrobacter eiseniae EF01-2]
Length = 301
Score = 176 bits (447), Expect = 3e-42, Method: Composition-based stats.
Identities = 59/292 (20%), Positives = 112/292 (38%), Gaps = 12/292 (4%)
Query: 1 MYKILAVCLFLTTFSISY--ARDADSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKT 57
+ K L L+T + + A + ++ W D ATT + + I+ LG+
Sbjct: 16 LTKTLGGLSALSTLAALSGRSARAQAKPLIKIGFVDGWADSVATTHLAAAIIRTRLGHPV 75
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
LA + ++ + +D + W P + + +++V N GA+ L V
Sbjct: 76 ETVPLAAGIMWQGVARGDLDTTLSAWLPVTHEAYL-ANFKDKVQIVGVNYSGARIGLIVP 134
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
D I S + + + +I GI+ G ++ + I +L+ L +S
Sbjct: 135 DYVK---IDSLAQLNDARADFDNRIVGIDSGAGIMRKTEEAIKAYGLALR---LQPSSGP 188
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDK 237
A +++ R R N P W PH + + + +L + I G GE V+ K
Sbjct: 189 AMTAELDRAYRANKPIAVTGWMPHWVFAKYKLRFLADPKGIYG-GEEHTSNVIHPGLHGK 247
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
P + LLK + ++ +M I + + +P + +WL
Sbjct: 248 APAVVALLKKLSWNSEEIGSVMLAID-GGAKPEAAVDKWIADNPARVASWLD 298
>gi|333028233|ref|ZP_08456297.1| putative glycine betaine ABC transport system permease
[Streptomyces sp. Tu6071]
gi|332748085|gb|EGJ78526.1| putative glycine betaine ABC transport system permease
[Streptomyces sp. Tu6071]
Length = 1116
Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats.
Identities = 54/302 (17%), Positives = 110/302 (36%), Gaps = 17/302 (5%)
Query: 4 ILAVCLFLTTFSISYARDADS---------CTPVRFADTGWTDIAATTAMTSVILEEILG 54
++ + L + D V W + A+T + ILE+ G
Sbjct: 272 VVILALVAGGMGVFGGSDDAKTVDATDVGKGKTVSVGYIPWDEGVASTFLWKEILEQR-G 330
Query: 55 YKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
+K + K + + N +D W P+ + ++ + +
Sbjct: 331 FKVDAKQYEAGSLYTGMANGQVDFQTDSWLPTTHAQYWKKYGD-KLEDMGAWYGPTSLEI 389
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
AV G+KS D+ + E +I GIEP + D + + L +++I+
Sbjct: 390 AVPSYV--KGVKSTADLKGKESEFKNRIVGIEPSAGEMGLLKDKV-VKDYGLSKYKVIDG 446
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDY 234
S +++ R + P W PH ++ L + G G+ V+T+ R +
Sbjct: 447 STPGMLAELDRAYKKKEPIAVTLWSPHWAYDKYDMTKLSDPKGSWGKGD-EVHTLARKGF 505
Query: 235 LDKCPNISRLLKNIKFSVALENEMMKLILNNKQ-DRQFVGRTMLRTHPDLLKNWLIGVTT 293
P ++ LK+ K S + + I + + +Q ++ ++ +P ++ L V
Sbjct: 506 SKDFPEAAQWLKDFKLSEKQLSSLESEIQDAGKGKQQEAVKSWIKKNPGIVDK-LAPVQK 564
Query: 294 FD 295
D
Sbjct: 565 TD 566
Score = 168 bits (426), Expect = 7e-40, Method: Composition-based stats.
Identities = 51/281 (18%), Positives = 104/281 (37%), Gaps = 8/281 (2%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGY 82
V W + A++ + +LE G+K + K + + N +D
Sbjct: 570 GKGKTVNMGFIPWDEGIASSYLWKEVLERR-GFKVSAKQYEAGALYTGMANGQVDFETDS 628
Query: 83 WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKI 142
W P+ K + ++ + +AV G+KS D+ + E +I
Sbjct: 629 WLPNTHKQYWDKYGD-RLEDMGAWYGPTSLEIAVPSYV--KGVKSTADLKGKESEFKNRI 685
Query: 143 YGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP 202
GIEP + D + + L +++I+ S +++ R + P W PH
Sbjct: 686 VGIEPSAGEMGLLKDKV-VKDYGLSKYKVIDGSTPGMLAELDRAYKKKEPIAVTLWSPHW 744
Query: 203 INSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI 262
++ L + G G+ V+T+ R + D P +++ LK K S + + I
Sbjct: 745 AYDKYDMTKLTDPKGSWGKGD-EVHTLARKGFSDDFPEVAKWLKGFKLSEKQLSSLEGAI 803
Query: 263 LNNKQ-DRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQ 302
+ + +Q + ++ +P ++ L V +
Sbjct: 804 QDAGKGKQQQAVQGWIKDNPGIVDK-LAPVKGGSSASAAAV 843
Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats.
Identities = 48/282 (17%), Positives = 105/282 (37%), Gaps = 6/282 (2%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP 65
+ + A + + A W + A T + +LE+ GYK N+K V
Sbjct: 836 SSASAAAVDFKNGAGKDERDRAINVAWFPWEEDIAATYLWKHVLEDR-GYKMNLKQFEVG 894
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
+ ++ +D+ W P +K + + E +AV +
Sbjct: 895 PMYAAMSRNQLDVQFDGWLPYTQKNYWDKYGS-KLTKIGEWYAPTSLEIAVPSYV--KDV 951
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
KS D+ ++ GIEPG + + + + K +++++ S S+++R
Sbjct: 952 KSLADLKGKGGTFDGRVIGIEPGTATMDILKNKVLPSYGLDKEYKVVDGSTPGMLSELKR 1011
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
P + W PH + ++ L + G G+ + TV + + P +++ L
Sbjct: 1012 AYAKKEPIAVMLWSPHWAYNQYDLTKLKDPKGSFGKGD-RITTVASKQFPKQYPQLAKWL 1070
Query: 246 KNIKFSVALENEMMKLILNNKQDRQF-VGRTMLRTHPDLLKN 286
K+ K S + +E+ + + ++ +P ++
Sbjct: 1071 KDFKLSDSQLSELENELHKQGTGHEDEAVDNWVKKNPGIVDK 1112
>gi|23100909|ref|NP_694376.1| glycine betaine ABC transporter glycine betaine-binding protein
[Oceanobacillus iheyensis HTE831]
gi|22779143|dbj|BAC15410.1| glycine betaine ABC transporter glycine betaine-binding protein
[Oceanobacillus iheyensis HTE831]
Length = 297
Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats.
Identities = 64/298 (21%), Positives = 109/298 (36%), Gaps = 21/298 (7%)
Query: 5 LAVCLFLTTFSISYARD----------ADSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
L L L+ F+ D A+ + A W A+T + +LE+ LG
Sbjct: 11 LISGLALSLFAAGCGSDDGENSGEGDSAEENKEIELAYVEWDTEVASTHVIGKVLED-LG 69
Query: 55 YKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
Y+ + L + + ++ N D + W P+ + ++ + NL+GAK L
Sbjct: 70 YEVELTPLDNAIMWEAVANGEADGMVAAWLPNTHAEQYESYGD-QVESLGVNLEGAKIGL 128
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
V + I E G I GIEPG D + +L G+ + +
Sbjct: 129 VVPEYM------DVNSIEDLSDEAGQTITGIEPGAGVVAASEDAVETYD-NLDGWSVQTS 181
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDY 234
S A + + N + W PH ++ YL E + G E ++ T+VR
Sbjct: 182 SSGAMATALGSAIDNEEEIIVTGWSPHWKFQAYDLKYLEDPEGVFGDAE-TIETMVREGL 240
Query: 235 LDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVT 292
+ P +L N ++ A E+M I D + + + D + W V
Sbjct: 241 EEDMPEAYTVLDNFQWDTAAMEEVMLNIS-EGADPEQAAADWVEANQDKVDEWTKDVE 297
>gi|254503890|ref|ZP_05116041.1| putative ABC transporter, QAT family, substrate-binding protein
[Labrenzia alexandrii DFL-11]
gi|222439961|gb|EEE46640.1| putative ABC transporter, QAT family, substrate-binding protein
[Labrenzia alexandrii DFL-11]
Length = 330
Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats.
Identities = 44/337 (13%), Positives = 99/337 (29%), Gaps = 37/337 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K+ ++ + A+ C V A+ W A + +ILE G +
Sbjct: 1 MKKLFVTVAATALVGMASSAMAEECGTVTVAEMNWASAGAIAHIDKIILENGYGCNVELV 60
Query: 61 LLAVPVTFR-SLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVND 118
TF + D+ W ++ + + + EGS+ + E L +G V
Sbjct: 61 TGDTMPTFTSMNEKGEPDMAPELWINAVREPLDKAVAEGSLIIGGEILNEGGVEGFWVPT 120
Query: 119 VGFALG--------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
+ + + + G ++ N F GF
Sbjct: 121 AIAEEHDIYTVAAAKERPDIFKGAEDDSKGGFFTCPTGWNCRITTGNLFRANGFDEAGFE 180
Query: 171 LI-EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIH------------------- 210
L+ S + R + W P I ++
Sbjct: 181 LVDPGSAAGLDGSLARANERGEGWLGYYWAPTAILGKYDMTLLDFEVEHDKEEWDKCTVV 240
Query: 211 YLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQ 270
+ + + ++ V+TVV ++ K +K + +++ + +N+ +
Sbjct: 241 EDCPDPKPNSWVKSEVFTVVTEEFSKKAGPTMDYVKGRTWDNRTAGKVLAWMTDNQATNE 300
Query: 271 FVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
L D+ W+ + + +++ +
Sbjct: 301 DGAYYFLENFEDVWTQWVS-------PEVAEKVKASL 330
>gi|295699488|ref|YP_003607381.1| substrate-binding region of ABC-type glycine betaine transporter
[Burkholderia sp. CCGE1002]
gi|295438701|gb|ADG17870.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia sp. CCGE1002]
Length = 285
Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats.
Identities = 62/289 (21%), Positives = 122/289 (42%), Gaps = 10/289 (3%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADT-GWTDIAATTAMTSVILEEILGYKTNIK 60
++A L + ++S ADS ++ GW D AT+ + + ++E+ LGY+ +
Sbjct: 6 KVVVASALGVMLAAVSAGVSADSKPTIKIGYVEGWDDSVATSNVAAEVIEKRLGYQVQLV 65
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+A V ++ + +D + W P + + + N AK L V D
Sbjct: 66 PVAAGVMWQGVARGDLDATLSAWLPVTHGAYWN-NFKDKVVDLGPNFNDAKIGLIVPDNV 124
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+KS D+ K E GA+I GI+ G Q+ + I ++L+ +S A
Sbjct: 125 ---DVKSVGDLQAKKSEFGARIVGIDAGAGVMQKTSEAIKAYGLD---YQLMPSSGSAMT 178
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+++ R + + P + W+PH + + + +L +++ G E V +VV + K P
Sbjct: 179 AELARSEAASKPIIVTGWKPHWMFAKYKLKFLDDPKKVFGEAE-HVDSVVNPELEKKAPT 237
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+ LK ++ + +M N + + H D + +W+
Sbjct: 238 VVAFLKKFQWKPGEIDTVMLA-TQNGEKPAAAADAWISAHSDRVDSWVK 285
>gi|126666080|ref|ZP_01737060.1| glycine betaine/proline ABC transporter, periplasmic glycine
betaine/proline-binding protein [Marinobacter sp. ELB17]
gi|126629402|gb|EBA00020.1| glycine betaine/proline ABC transporter, periplasmic glycine
betaine/proline-binding protein [Marinobacter sp. ELB17]
Length = 320
Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats.
Identities = 49/316 (15%), Positives = 98/316 (31%), Gaps = 24/316 (7%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K+ V L + + A C V W T + I+E+ G ++
Sbjct: 1 MRKLTPVALLCA--LSAPSLAAAECGEVSITKMNWASSTVVTRVAEFIMEQGYGCDVSVI 58
Query: 61 LLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQ-GAKYMLAVND 118
P +N DI W ++ + + E+G IK VAE L G +
Sbjct: 59 PSDTVPAVTSVAENGKPDIVTELWLNAVSEALLQLEEQGKIKRVAEVLDPGGIEGWWIPT 118
Query: 119 VGFA--LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR-LIEAS 175
+K+ + I + + ++ G + +++ G S
Sbjct: 119 YLAEKHPELKTIEGIMANPELVDSRFNNCPSGWGCRIQSDNLVRALDLKASGIEVFDHGS 178
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIH-----------------YLPGGEEI 218
+ + ++ W P ++ +
Sbjct: 179 GETLATSMASAVQSEESWFGYYWGPTVPLGKYDMTRVSLGEYKADVHTRNQTQEVDNPGV 238
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLR 278
S F A++ TVV + + ++ P I +L + F + + ++ + N + L
Sbjct: 239 SDFPAATILTVVTTSFGEREPEIVEMLSKMTFKTSTMSALLAWMDENDASAEEAAVYFLS 298
Query: 279 THPDLLKNWLIGVTTF 294
+ D +WL T
Sbjct: 299 NNSDEWSSWLNDAATK 314
>gi|260778173|ref|ZP_05887066.1| putative periplasmic substrate-binding protein [Vibrio
coralliilyticus ATCC BAA-450]
gi|260606186|gb|EEX32471.1| putative periplasmic substrate-binding protein [Vibrio
coralliilyticus ATCC BAA-450]
Length = 332
Score = 176 bits (446), Expect = 4e-42, Method: Composition-based stats.
Identities = 45/323 (13%), Positives = 97/323 (30%), Gaps = 38/323 (11%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVT-FRSLKNK 74
+ A C V AD W + + ILE + + T ++
Sbjct: 17 FTSQAVASECGKVTIADMNWNSASLIANIDRFILEHGYDCEAELIPGDTMPTGTSMIEKG 76
Query: 75 GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVNDVGFALG--------- 124
D+ W SL+ + +EE ++ +L G + V
Sbjct: 77 QPDVAPELWSNSLKDALDKGVEEKRLRYAGRSLVDGGEEGFWVPSYLVKQYPEMKTIDGV 136
Query: 125 IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI-EASELASFSQI 183
IK + + Y G ++ K GF ++ S I
Sbjct: 137 IKHANLFEHPEDPEKSAFYSCPAGWNCQISAGNLFKALKLDNSGFVIVDPGSSAGLSGAI 196
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG-------------------EEISGFGEA 224
+ P W P + ++ + G + + + +
Sbjct: 197 AKAYEREEPWFGYYWAPTAVLGKYDMVKVDFGSGVDEKEFIACTTNADCEAPKATMYPPS 256
Query: 225 SVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLL 284
V+T+ + + P+ + F+ A N+++ + +N+ D + L +P +
Sbjct: 257 PVHTITTEAFATRAPDAYQYFTKRGFTNADMNQLLAWMEDNQADGEETMYYFLEDYPQIW 316
Query: 285 KNWLIGVTTFDGQDPSRQLERFM 307
W+ QD + +++ +
Sbjct: 317 TKWVS-------QDVANKVKSAL 332
>gi|299534515|ref|ZP_07047847.1| glycine betaine ABC transporter glycine betaine-binding protein
[Lysinibacillus fusiformis ZC1]
gi|298729888|gb|EFI70431.1| glycine betaine ABC transporter glycine betaine-binding protein
[Lysinibacillus fusiformis ZC1]
Length = 291
Score = 176 bits (446), Expect = 4e-42, Method: Composition-based stats.
Identities = 61/295 (20%), Positives = 107/295 (36%), Gaps = 15/295 (5%)
Query: 3 KILAVCLFLTTFSISYARDAD----SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
KI + L + + + D + A W A+T + +LE+ LGYK
Sbjct: 8 KIGIAFICLIVLTACGSENEDTKNTEKGEINLAYVEWDTEVASTHVVGQVLED-LGYKVT 66
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ L + + +L N +D + W P I+ + ENL GAK L V
Sbjct: 67 LTPLDNGIMWEALANGEVDGMVSAWLPQTHAPQVEKYN-NKIENLGENLTGAKIGLVVPS 125
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
I + I GIEPG + K +L+G+ ++ +S A
Sbjct: 126 YM------DVDSIEDLTNQANQTITGIEPGANMMATTENAYKEYK-NLEGWNVLTSSAGA 178
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+ + + NN + W PH I + ++ YL + + G E + T R+ +
Sbjct: 179 MTAALSQAISNNEEIIITGWSPHWIFNAYDLKYLDDPKGLYGTEEY-IGTFARNGLKEDA 237
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
P +L +S +M I+ + + + + + W V T
Sbjct: 238 PEAYSVLDRFNWSAKDIESVMFDIM-EGMSAPDAAKKWIANNREKVAEWTKDVQT 291
>gi|222086306|ref|YP_002544839.1| Substrate-binding region of ABC-type glycine betaine transport
system [Agrobacterium radiobacter K84]
gi|221723754|gb|ACM26910.1| Substrate-binding region of ABC-type glycine betaine transport
system [Agrobacterium radiobacter K84]
Length = 332
Score = 176 bits (445), Expect = 4e-42, Method: Composition-based stats.
Identities = 50/339 (14%), Positives = 103/339 (30%), Gaps = 39/339 (11%)
Query: 1 MYKILAVCLFLTTF-SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M K++A +F + + + A C V A+ W + +IL+ G +
Sbjct: 1 MKKLIASAIFAVGAYAFAGSAQAAECGDVSIAEMNWASAGVAAQVDKIILQNGYGCNVTL 60
Query: 60 KLLAVPVTFR-SLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVN 117
TF + DI W S+ + + EGS+ A L G +
Sbjct: 61 VTGDTQPTFTSMNEKGTPDIAPELWINSVRIALDKAVSEGSLIEAAPLLSDGGVEGWWIP 120
Query: 118 DVGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
+K + + +Y G ++ G
Sbjct: 121 KFLADAHPDIKTVQDALKHPELFPAPEDSSKGAVYNCPSGWNCQISTANLYKATGAEKLG 180
Query: 169 FRLIE-ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIH----------------- 210
F L++ S I + W P I ++
Sbjct: 181 FTLVDTGSAAGLDGSIANAFEKKTGWLGYYWAPTAILGKYDMVRLSFDVPHDKKEWDACT 240
Query: 211 --YLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQD 268
+++ + + VYTVV + K +K K+ +++ + +N+
Sbjct: 241 SQQDCANPKVNSYPVSEVYTVVTKAFASKASVAMDYVKTRKWDNGTVGKVLAWMTDNQGT 300
Query: 269 RQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ + L+T+PD+ W+ D + +++ +
Sbjct: 301 NEDAAKYFLKTYPDMWTKWVS-------ADVATKVKASL 332
>gi|66046986|ref|YP_236827.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. syringae B728a]
gi|63257693|gb|AAY38789.1| Substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. syringae B728a]
Length = 284
Score = 176 bits (445), Expect = 4e-42, Method: Composition-based stats.
Identities = 60/291 (20%), Positives = 114/291 (39%), Gaps = 12/291 (4%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADT-GWTDIAATTAMTSVILEEILGYKTNI 59
M KIL L S A++ + GW+D ATT + S ++++ LGY +
Sbjct: 3 MRKILGAGAALVLAVSSTLAIAET-KTLTIGYVEGWSDSVATTFVASEVIKQKLGYDVKL 61
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ +A + ++++ +D+ + W P ++ + N + AK L V +
Sbjct: 62 QSVAAGIMWQAVATDKLDLMLSAWLPGTHGEYYAKYKD-QVVNYGPNFKDAKIGLIVPEY 120
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
A I+ K KI GI+ G+ + I + G++L +S
Sbjct: 121 VKAKTIEDL----KTDASFNKKITGIDAGSGVMLKTDQAIKDYGLD--GYKLQASSGAGM 174
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+++ R ++ V W PH + + + +L + + G E +V V K P
Sbjct: 175 IAELTRAEKAKKSIVVTGWVPHWMFAKWKLRFLDDPKGVYGEAE-TVDNVASLGLEKKAP 233
Query: 240 NISRLLKNIKF-SVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+ LK ++ S E+M I + + + + HPD + W
Sbjct: 234 EVVAFLKKFQWASKDEIGEVMLAI-QDGAKPEAAAKDWVAKHPDRVAAWTA 283
>gi|320011770|gb|ADW06620.1| Substrate-binding region of ABC-type glycine betaine transport
system [Streptomyces flavogriseus ATCC 33331]
Length = 875
Score = 176 bits (445), Expect = 5e-42, Method: Composition-based stats.
Identities = 63/320 (19%), Positives = 113/320 (35%), Gaps = 22/320 (6%)
Query: 1 MYKILAVCLFLTTFSISYARDA----------DSCTPVRFADTGWTDIAATTAMTSVILE 50
M ++ + L +I+ + DA + W + A+T + ILE
Sbjct: 304 MTGVVVLALVAGGLNIAGSSDAKGSQADASDVGQGQKINMGYIPWDEGIASTFLWKEILE 363
Query: 51 EILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGA 110
+ GY+T I L + + ID W P+ K + + +
Sbjct: 364 QR-GYETGITQLDAGPLYSGVARGDIDFQTDSWLPTTHKDYWDKYSD-QLDDMGAWYGPT 421
Query: 111 KYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
L V GI S +D+ K+ KI GIE + + ++
Sbjct: 422 SLELTVPSYV--KGIDSLEDLKGQGKKFDGKIIGIESSAGMMGTLNKKVLKEYGLEGEYK 479
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
++ +S + +++ + P V W PH ++ L + G GE V+TV
Sbjct: 480 VVSSSTSSMLAELNASIKKKEPVVVTLWSPHWAYGKHDLKKLKDPKGAWGKGE-EVHTVA 538
Query: 231 RSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQ-DRQFVGRTMLRTHPDLLKNWLI 289
+ K P +++ LK+ K S + I N Q Q R L+ + L+ L
Sbjct: 539 HKGFAKKAPAVAKWLKDFKLSEEQLTSLENEIQNAGQGKEQDGVRAWLKKNDGLVDK-LA 597
Query: 290 GVT-----TFDGQDPSRQLE 304
V + G+D + +
Sbjct: 598 PVPGGAGGSQQGKDAGKTVN 617
Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats.
Identities = 52/275 (18%), Positives = 104/275 (37%), Gaps = 6/275 (2%)
Query: 13 TFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLK 72
+ + D+ V W + A+T + +LE+ GY+T +K L + L
Sbjct: 601 GGAGGSQQGKDAGKTVNMGYFPWDEAIASTYLWQNMLEDR-GYRTTVKQLDPGPLYTGLA 659
Query: 73 NKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIA 132
+D+ W P+ K ++ ++ + L+V GI S +D+
Sbjct: 660 QGQLDVQFDSWLPTTHKDYWDRYKD-NLTDLGSWYGPTSLELSVPSYV--KGIDSLEDLK 716
Query: 133 KYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIP 192
K+ KI GIE + + ++++ +S + +++ R + P
Sbjct: 717 GQGKKFKGKIIGIESSAGMMGTLNKKVLKEYGLEGEYKVVSSSTSSMLAELNRSIKKKEP 776
Query: 193 AVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSV 252
V W PH ++ L + G GE ++TV + D+ P ++ LK+ K S
Sbjct: 777 VVVTLWSPHWAYGKHDLKKLEDPKGAWGEGE-QIHTVAKKDFAKDFPELTGWLKDFKLSE 835
Query: 253 ALENEMMKLILNNKQ-DRQFVGRTMLRTHPDLLKN 286
A + + + R + +PD++
Sbjct: 836 AQLASLEVELQKGGAGKEKESARRWMNANPDVVAK 870
>gi|297198469|ref|ZP_06915866.1| glycine betaine ABC transport system permease [Streptomyces sviceus
ATCC 29083]
gi|197717386|gb|EDY61420.1| glycine betaine ABC transport system permease [Streptomyces sviceus
ATCC 29083]
Length = 871
Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats.
Identities = 62/291 (21%), Positives = 105/291 (36%), Gaps = 8/291 (2%)
Query: 13 TFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLK 72
++S +D + W D A+T + ILEE GY+ + K + SL
Sbjct: 327 ATAVSGGKDVGQGKKISIGYVPWDDGVASTFLWKEILEER-GYQVDAKQFDAGPLYTSLA 385
Query: 73 NKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIA 132
+ D G W P+ + + + L+V I S D+
Sbjct: 386 SGNADFMTGAWLPTTHEQYWKKYGG-KLDDLGAWYDKTSLELSVPSY--MKDINSLADLK 442
Query: 133 KYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIP 192
G KI GIE + + K + ++++S A ++++R P
Sbjct: 443 GKAARFGGKITGIESSAGEMALLKSKVLGAYGLDKEYEVVDSSTPAMLAELKRAYAKKAP 502
Query: 193 AVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSV 252
W PH +D ++ L + G G+ ++TV R + D P + LKN K
Sbjct: 503 IAVTLWSPHWAYNDYDLKKLKDPKGAWGSGDG-IHTVARKGFADDNPVVGGWLKNFKLDE 561
Query: 253 ALENEMMKLILNNKQ-DRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQ 302
+ I + ++Q RT L+ HP L+ L V G +
Sbjct: 562 KQLTSLEAEINKAGKGEQQDAVRTWLKQHPGLVDK-LAPVKD-SGTPAEAK 610
Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats.
Identities = 55/268 (20%), Positives = 107/268 (39%), Gaps = 6/268 (2%)
Query: 18 YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGID 77
A++ PV A W + A T + +LE GYK N+K + V + L + +D
Sbjct: 603 SGTPAEAKRPVNVAWFPWDEDIAVTYLWKNVLERR-GYKLNLKQMDVGPVYTGLASGDLD 661
Query: 78 IFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKE 137
+ W P +K + S+ + + +AV G+K+Y+D+
Sbjct: 662 LNFDAWLPYAQKNYWDK-SKDSLADLGTWYRPTSLEVAVPSYV--KGVKTYEDLKGKASL 718
Query: 138 LGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLS 197
KI GIEPG + + + K + +++ S A ++++R P +
Sbjct: 719 FDGKIIGIEPGTGEMNLLKNKVLPGYGLDKEYEVVDGSTPAMLAELKRAYARKQPVAVVL 778
Query: 198 WEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENE 257
W PH S ++ L ++ G G ++ T+ + + P +++ +K S
Sbjct: 779 WSPHWAYSQYDLTKLKDDRKLFGEG-NTIRTIANEKFPGQYPRLTKWIKGFHMSEDELGT 837
Query: 258 MMKLILNNKQDRQF-VGRTMLRTHPDLL 284
+ I Q + L+ HP+++
Sbjct: 838 LESEINKYGQGHEEQAVTAWLKEHPEMV 865
>gi|167625947|ref|YP_001676241.1| substrate-binding region of ABC-type glycine betaine transport
system [Shewanella halifaxensis HAW-EB4]
gi|167355969|gb|ABZ78582.1| Substrate-binding region of ABC-type glycine betaine transport
system [Shewanella halifaxensis HAW-EB4]
Length = 334
Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats.
Identities = 53/319 (16%), Positives = 98/319 (30%), Gaps = 31/319 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M +IL + L + A + C V AD W+ + + ILE G + +
Sbjct: 1 MKRILLIGGLLLSGVTHQALADEQCGKVTIADMNWSSASLIANVDRFILEHGYGCEAELT 60
Query: 61 LLAVPVTFRSL-KNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVND 118
T S+ + DI W S+++ I + + + + ++L G + V
Sbjct: 61 PGDTMPTSTSMVEKGEPDIAPEIWSNSVKELIEQAVTDKRLVIAGKSLSDGGEEGFWVPQ 120
Query: 119 VGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
I + + + YG G ++ K S GF
Sbjct: 121 YMVDKDPSLKTIQGVIANVKAFEHPEDPERGAFYGCPAGWGCQLSAENLFRALKLSDAGF 180
Query: 170 RLI-EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIH------------------ 210
LI S I R P W P + +
Sbjct: 181 DLIDPGSGAGLAGSIARAYERQQPWFGYYWAPTAVLGKYKMVKVDFGSGVDAKEFSDCIS 240
Query: 211 -YLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDR 269
+++ + A V T+ +++ K + L + A N ++ + +N+ D
Sbjct: 241 QAECADPKVTMYPAALVQTITTAEFAKKSTSAFEYLGKRALTNAQMNSLLAWMEDNQADG 300
Query: 270 QFVGRTMLRTHPDLLKNWL 288
L H D+ W+
Sbjct: 301 TIAAEHFLINHQDIWLEWV 319
>gi|307308649|ref|ZP_07588348.1| Substrate-binding region of ABC-type glycine betaine transport
system [Sinorhizobium meliloti BL225C]
gi|307318783|ref|ZP_07598215.1| Substrate-binding region of ABC-type glycine betaine transport
system [Sinorhizobium meliloti AK83]
gi|306895504|gb|EFN26258.1| Substrate-binding region of ABC-type glycine betaine transport
system [Sinorhizobium meliloti AK83]
gi|306900854|gb|EFN31464.1| Substrate-binding region of ABC-type glycine betaine transport
system [Sinorhizobium meliloti BL225C]
Length = 344
Score = 175 bits (444), Expect = 6e-42, Method: Composition-based stats.
Identities = 48/339 (14%), Positives = 104/339 (30%), Gaps = 39/339 (11%)
Query: 1 MYKILAVCLF-LTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M K+LA + S++ A C V A+ W + ILE G +
Sbjct: 13 MKKLLATLILTAGICSLAGPSGAAECGDVSIAEMDWASAGVAAHVDRFILENGYGCSVKL 72
Query: 60 KLLAVPVTFR-SLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVN 117
+TF + D+ W S+ ++EG + A+ L +G +
Sbjct: 73 VAGDTMLTFTSMNEKAEPDLVPELWINSVRTPFDAAVKEGRLVEGAKILSEGGVEGWWIP 132
Query: 118 DVGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
+K + ++ I+ ++ G
Sbjct: 133 KFIADAHPDIRTVQDALKHPELFPSHENPAKGAIHNCPSSWNCRFSTANLYKALDAEKAG 192
Query: 169 FRLI-EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE---------- 217
F+LI S + I + W P + + L G +
Sbjct: 193 FQLIDPGSAAGLDASITEAFEKKTGWLGYYWAPTALLGKYEMTLLSFGVDHDKAEWDSCT 252
Query: 218 ---------ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQD 268
++ + + VYTVV + D+ + ++ ++ A N+++ + N+
Sbjct: 253 AAPDCPTPKVNSYPVSDVYTVVTKSFADRAGSAMDYVEARQWENATVNKVLAWMDQNQGT 312
Query: 269 RQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ R L ++ W+ + + +++ +
Sbjct: 313 NESAARYFLGNFQEIWTQWVS-------PEVAEKVKAAL 344
>gi|329939067|ref|ZP_08288441.1| putative glycine betaine ABC transporter substrate-binding and
permease component [Streptomyces griseoaurantiacus M045]
gi|329301952|gb|EGG45845.1| putative glycine betaine ABC transporter substrate-binding and
permease component [Streptomyces griseoaurantiacus M045]
Length = 604
Score = 175 bits (444), Expect = 6e-42, Method: Composition-based stats.
Identities = 49/264 (18%), Positives = 94/264 (35%), Gaps = 6/264 (2%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWY 84
+ W + ATT + IL+E G++ + L ID W
Sbjct: 337 GKKIGIGYIPWDEGIATTFLWKEILQER-GFEVTTSQYTAGPLYTGLAAGQIDFQTDSWL 395
Query: 85 PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYG 144
P+ + + + LAV ++S D+ ++ E +I G
Sbjct: 396 PTTHAEYWKKYGK-QLDDLGSWYGPTSLELAVPAYV--KDVESLADLKEHASEFDGRIVG 452
Query: 145 IEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPIN 204
IEP + I +++++ S A ++++R P V W PH
Sbjct: 453 IEPSAGEMGLLKSKILKAYGLDGTYKVVDGSTPAMLAELKRAYAKKEPIVVPLWSPHWAY 512
Query: 205 SDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLIL- 263
++ ++ L + G G+ V+ + R + + P + + LKN + + I
Sbjct: 513 NNFDLRKLKDPKGAWGKGD-DVHVLARKGFTEDNPVVGKWLKNFSMTEKQLTSLEAEIQK 571
Query: 264 NNKQDRQFVGRTMLRTHPDLLKNW 287
+K + R L+ +P L W
Sbjct: 572 VDKGQERDAIRAWLKKNPGQLDKW 595
>gi|294497627|ref|YP_003561327.1| glycine/betaine ABC transporter glycine/betaine-binding protein
OpuAC [Bacillus megaterium QM B1551]
gi|294347564|gb|ADE67893.1| glycine/betaine ABC transporter, glycine/betaine-binding protein
OpuAC [Bacillus megaterium QM B1551]
Length = 287
Score = 175 bits (444), Expect = 7e-42, Method: Composition-based stats.
Identities = 59/294 (20%), Positives = 121/294 (41%), Gaps = 13/294 (4%)
Query: 1 MYKILAVCLFLTTFSISYARDAD-----SCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M K+L + + I+ A + +T+ A T + ILE+ GY
Sbjct: 1 MKKLLLISMTCFLLVITSACGNGNGAFKDKKTITIGMNNYTENIAYTYVWKHILEDR-GY 59
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
K L + N IDI W P+ + ++ + + L+ A+ A
Sbjct: 60 KVRTVFLEKAGVWVGTANDDIDISFAPWLPTTDAPFYKKYKD-QVNIEDPWLKNARLGFA 118
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
V + + +D+AK ++ K+ GI+PG+ N + + K + L+++S
Sbjct: 119 VPAY--MKDVNTTEDLAKVASDVDNKVIGIDPGSSINGLAEQALKDYNL--KSYTLVKSS 174
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYL 235
E A S++R+ P V W PH +D +I YL + G + ++YT+ ++
Sbjct: 175 EAAMLSELRKAYDAKKPIVVTMWNPHWAFADFDIKYLKDPKNSFGDPD-NIYTMTSKEFK 233
Query: 236 DKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
P + + + N + + L + ++ + + + + + ++ H L+ +W
Sbjct: 234 KTNPQVIKWMNNAQMNDKLISPLLSQVEKS-SNPEEAAQEWVKKHKKLVDSWTK 286
>gi|56965179|ref|YP_176911.1| proline/glycine betaine ABC transporter substrate-binding protein
[Bacillus clausii KSM-K16]
gi|56911423|dbj|BAD65950.1| proline/glycine betaine ABC transporter substrate-binding protein
[Bacillus clausii KSM-K16]
Length = 285
Score = 175 bits (443), Expect = 7e-42, Method: Composition-based stats.
Identities = 65/291 (22%), Positives = 120/291 (41%), Gaps = 7/291 (2%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M KI ++ L ++ + + + A + +LE+ GY+ +
Sbjct: 1 MNKITSITGILLAALTLGGCASNE-QTITIGHNNYAESIAFAHLWKTLLEDQ-GYQVELS 58
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL-EEGSIKLVAENLQGAKYMLAVNDV 119
L+ + F ++N IDI W P ++ EE ++ +G LAV
Sbjct: 59 LVEKAMLFNGVENGDIDIGFNTWLPFTDQAYVSIDSEEIDVQANGVLYEGTTLGLAVPSY 118
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+++ D+A Y EL I GI+PG+ Q D + + + L+ F L +SE A
Sbjct: 119 MDD--VETIGDLAGYFDELKGTITGIDPGSALMQLTQDEV-MDHYGLEEFTLQSSSEQAM 175
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+++ +N P V W PH ++ +L + + G E +Y + R+ + P
Sbjct: 176 IAELDARYKNEEPIVVTLWSPHWTFGSYDLKFLDDPDHVYGE-EDDIYYMARNGLAEDEP 234
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIG 290
++ + L N F+ +E++ L + D + H DL+ WL G
Sbjct: 235 DLIQWLNNSHFTEETLSELLTLQQQYEDDIDGAVAEWIEKHEDLVHAWLEG 285
>gi|237798905|ref|ZP_04587366.1| glycine betaine-binding protein [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331021759|gb|EGI01816.1| glycine betaine-binding protein [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 284
Score = 175 bits (443), Expect = 7e-42, Method: Composition-based stats.
Identities = 60/291 (20%), Positives = 115/291 (39%), Gaps = 12/291 (4%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADT-GWTDIAATTAMTSVILEEILGYKTNI 59
M KIL L S A++ + GW+D ATT + S ++++ LGY+ +
Sbjct: 3 MRKILGAGAALVLAVSSTLATAET-KTLTIGYVEGWSDSVATTYVASEVIKQKLGYEVKL 61
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ +A + ++++ +D+ + W P ++ + N + AK L V +
Sbjct: 62 QSVAAGIMWQAVATDKLDVMLSAWLPGTHGEYYAKYKD-QVVNYGPNFKDAKIGLIVPEY 120
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
A I+ K KI GI+ G+ + I + G++L +S
Sbjct: 121 VKAKSIEDL----KTDASFNKKITGIDAGSGVMLKTDQAIKDYALD--GYKLQASSGAGM 174
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+++ R ++ V W PH + + + +L + + G +V +V K P
Sbjct: 175 IAELTRAEKAQKAIVVTGWVPHWMFAKWKLRFLDDPKGVYG-AAETVDSVGSLGLEKKAP 233
Query: 240 NISRLLKNIKF-SVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
++ LK ++ S E+M I + + L HPD + W
Sbjct: 234 DVVAFLKKFQWASKDEIGEVMLAI-QEGAKPEAAAKDWLAKHPDRVAAWTA 283
>gi|289676964|ref|ZP_06497854.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. syringae FF5]
gi|302188598|ref|ZP_07265271.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. syringae 642]
Length = 284
Score = 175 bits (443), Expect = 8e-42, Method: Composition-based stats.
Identities = 60/291 (20%), Positives = 114/291 (39%), Gaps = 12/291 (4%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADT-GWTDIAATTAMTSVILEEILGYKTNI 59
M KIL L S A++ + GW+D ATT + S ++++ LGY +
Sbjct: 3 MRKILGAGAALVLAVSSTLAIAET-KTLTIGYVEGWSDSVATTFVASEVIKQKLGYDVKL 61
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ +A + ++++ +D+ + W P ++ + N + AK L V +
Sbjct: 62 QSVAAGIMWQAVATDKLDLMLSAWLPGTHGEYYAKYKD-QVVNYGPNFKDAKIGLIVPEY 120
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
A I+ K KI GI+ G+ + I + G++L +S
Sbjct: 121 VKAKTIEDL----KTDASFNKKITGIDAGSGVMLKTDQAIKDYGLD--GYKLQASSGAGM 174
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+++ R ++ V W PH + + + +L + + G E +V V K P
Sbjct: 175 IAELTRAEKAKKSIVVTGWVPHWMFAKWKLRFLDDPKGVYGEAE-TVDNVGSLGLEKKAP 233
Query: 240 NISRLLKNIKF-SVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+ LK ++ S E+M I + + + + HPD + W
Sbjct: 234 EVVAFLKKFQWASKDEIGEVMLAI-QDGAKPEAAAKDWVAKHPDRVAAWTA 283
>gi|288961702|ref|YP_003452012.1| glycine betaine/proline transport system substrate-binding protein
[Azospirillum sp. B510]
gi|288913982|dbj|BAI75468.1| glycine betaine/proline transport system substrate-binding protein
[Azospirillum sp. B510]
Length = 296
Score = 175 bits (443), Expect = 8e-42, Method: Composition-based stats.
Identities = 63/290 (21%), Positives = 119/290 (41%), Gaps = 9/290 (3%)
Query: 4 ILAVCLFLTTFSISYARDA-DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL 62
+L+ + + ++ A A + + T W+D A T + ++EE GYK + +
Sbjct: 11 LLSAAMTVGLGTVVIANPAQAAEKSINIGWTAWSDAEAVTKLAKRVIEERFGYKVELTMA 70
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
+ + ++ + + +D + W P K + + I + A+ V D
Sbjct: 71 DIGIQYQGIASGKLDAMLMSWQPLTHKPYLDKVGK-DIVDLGPLYTRARLGWVVPDYIPV 129
Query: 123 LGIKSYQDIAKY--KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+KS +D+ K +K+LG KI GI+PG+ Q + KG +L+ AS+ A
Sbjct: 130 DQVKSIEDLKKPEVQKQLGGKIQGIDPGSGLMQASEKALKTYDL--KGLQLVSASDAAML 187
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ + R + N V SW PH + ++ + YL + G G SV +VR P
Sbjct: 188 AALERAMKRNEWIVVTSWSPHWMFANWKLRYLEDPKGALG-GLESVNAIVRKGLYQDHPE 246
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIG 290
I L + + MM+ + + ++ + + W+ G
Sbjct: 247 IFEFLNRMVLPIGDLEAMMQEAR--QTSYEQAVDNYIKNNKTRIDYWVTG 294
>gi|240140555|ref|YP_002965035.1| glycine/betaine/proline transporter, Substrate-binding periplasmic
component of ABC transporter [Methylobacterium
extorquens AM1]
gi|240010532|gb|ACS41758.1| glycine/betaine/proline transporter, Substrate-binding periplasmic
component of ABC transporter [Methylobacterium
extorquens AM1]
Length = 271
Score = 175 bits (442), Expect = 9e-42, Method: Composition-based stats.
Identities = 58/280 (20%), Positives = 108/280 (38%), Gaps = 9/280 (3%)
Query: 10 FLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFR 69
+ +++ + VR A W D T + ++LEE GY+ LA ++
Sbjct: 1 MIACLALAQTPAEAAGKQVRLAYVEWADAVVATNILKLVLEEK-GYQVKTIPLAAAAMWQ 59
Query: 70 SLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQ 129
S+ D + W P + L + I L+ N+ GA+ AV + S +
Sbjct: 60 SVATGDADASVAAWLPVTQGAYYEKL-KNRIDLIGPNVTGARIGWAVP---ATSSLNSIE 115
Query: 130 DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRN 189
D+A E+ K+ GI+PG + I +L++ S+ S ++ R
Sbjct: 116 DLATKASEVDGKVIGIDPGAGVMKSSEAAIKAYGL---KVKLLDGSDATMTSALKDAVRQ 172
Query: 190 NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
V +W PH + + ++ YL ++ G E+ V T+ R D P + +L+ K
Sbjct: 173 KKDVVVTAWTPHWMFARYDLKYLADPKKSFGEAES-VNTLARKGLKDDLPEVYAILQKFK 231
Query: 250 FSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
++ E +M + + + + WL
Sbjct: 232 LTIKDEEAVMAENEEKGAKPEATAAKWIAQNRATVDGWLK 271
>gi|330971114|gb|EGH71180.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. aceris str. M302273PT]
Length = 284
Score = 175 bits (442), Expect = 1e-41, Method: Composition-based stats.
Identities = 59/291 (20%), Positives = 114/291 (39%), Gaps = 12/291 (4%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADT-GWTDIAATTAMTSVILEEILGYKTNI 59
M KIL L + A++ + GW+D ATT + S ++++ LGY +
Sbjct: 3 MRKILGAGAALVLAVSATLAIAET-KTLTIGYVEGWSDSVATTFVASEVIKQKLGYDVKL 61
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ +A + ++++ +D+ + W P ++ + N + AK L V +
Sbjct: 62 QSVAAGIMWQAVATDKLDLMLSAWLPGTHGEYYAKYKD-QVVNYGPNFKDAKIGLIVPEY 120
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
A I+ K KI GI+ G+ + I + G++L +S
Sbjct: 121 VKAKTIEDL----KADASFNKKITGIDAGSGVMLKTDQAIKDYGLD--GYKLQASSGAGM 174
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+++ R ++ V W PH + + + +L + + G E +V V K P
Sbjct: 175 IAELTRAEKAKKSIVVTGWVPHWMFAKWKLRFLDDPKGVYGEAE-TVDNVASLGLEKKAP 233
Query: 240 NISRLLKNIKF-SVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+ LK ++ S E+M I + + + + HPD + W
Sbjct: 234 EVVAFLKKFQWASKDEIGEVMLAI-QDGAKPEAAAKDWVAKHPDRVAAWTA 283
>gi|298674766|ref|YP_003726516.1| glycine betaine ABC transporter substrate-binding protein
[Methanohalobium evestigatum Z-7303]
gi|298287754|gb|ADI73720.1| Substrate-binding region of ABC-type glycine betaine transport
system [Methanohalobium evestigatum Z-7303]
Length = 308
Score = 175 bits (442), Expect = 1e-41, Method: Composition-based stats.
Identities = 58/305 (19%), Positives = 111/305 (36%), Gaps = 29/305 (9%)
Query: 4 ILAVCLFLTTFSISYARDADSCT------------------PVRFADTGWTDIAATTAMT 45
++ + L L A D V A W D ATT +
Sbjct: 13 VIGMVLILAIAGAGCATDQSEGKQDNTDDNNSGTETTDNTKEVSIAYVQWDDAIATTNVV 72
Query: 46 SVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAE 105
+ E+ GY + +A ++++ + +D W P+ + + I V
Sbjct: 73 KQVYEKA-GYDVKMNSVAAGAMYQAIASGDVDFSACGWLPNTQANYWEEYGD-QIDKVGP 130
Query: 106 NLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFS 165
NL+GA L V + I S +++ + K++L KI GI+PG + I
Sbjct: 131 NLEGASTGLVVPTY---MDIDSIEELNENKEKLDGKITGIDPGAGIMSQTDTAIQEYNLD 187
Query: 166 LKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEAS 225
+ L+ +S S ++ P V W PH + ++ YL + + +GE
Sbjct: 188 ---YELMSSSSAGMASALKAAYDKKEPIVVTLWNPHWAFARWDLKYLDDPKGV--YGEDQ 242
Query: 226 VYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLK 285
+ + R + P +L ++S+ +M I + + + +P+ +
Sbjct: 243 IVNLARQGMSEDKPEAYEILNRFEWSMEDVESVMADI-QSGTPAEEAASKWIENNPEKVD 301
Query: 286 NWLIG 290
W+ G
Sbjct: 302 YWVNG 306
>gi|294084958|ref|YP_003551718.1| glycine betaine ABC transporter substrate-binding protein
[Candidatus Puniceispirillum marinum IMCC1322]
gi|292664533|gb|ADE39634.1| Substrate-binding region of ABC-type glycine betaine transport
system [Candidatus Puniceispirillum marinum IMCC1322]
Length = 337
Score = 175 bits (442), Expect = 1e-41, Method: Composition-based stats.
Identities = 49/326 (15%), Positives = 101/326 (30%), Gaps = 37/326 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADS---CTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M K+L + + +I A A + C V A+ W A + +IL E G +
Sbjct: 1 MKKLLLSTAIIASGAIGLAGQASADGHCGTVTIAEMNWNSAALMAQVDKIILSEGYGCEV 60
Query: 58 NIKLLAVPVTFR-SLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLV-AENLQGAKYMLA 115
I T ++ DI W ++ + +A ++EG + + + G
Sbjct: 61 EIVPGDTMPTATSMMEKGVPDIAPELWANAVARPLAVAVDEGRLHIASDAPITGLGEGWF 120
Query: 116 VNDVGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSL 166
V I+ + ++ G ++
Sbjct: 121 VLPHTLKDNPELKTVLDVIERPDLFPHPEDPSKGALHTCPSGWNCQLTTNNLYRAFDMEA 180
Query: 167 KGFRLI-EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYL------------- 212
KG+ L+ S I + +N + W P + ++ +
Sbjct: 181 KGWLLVDPGSSAGLNGSISKAADSNQNWLGYYWAPTDMIGKYDMQMMDFGVPFAGADNWD 240
Query: 213 ---------PGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLIL 263
+ S + E+ V TV+ D+ + + + L F + N M+ +
Sbjct: 241 GCIALPEQECEDPKPSAWTESVVNTVITDDFKKRAGDANDYLTKRVFPGPVMNGMLVYMT 300
Query: 264 NNKQDRQFVGRTMLRTHPDLLKNWLI 289
+ + + L H D+ +W+
Sbjct: 301 EEQANGEDAAYEFLSKHSDVWSSWVS 326
>gi|330891707|gb|EGH24368.1| amino acid ABC transporter permease [Pseudomonas syringae pv. mori
str. 301020]
Length = 284
Score = 175 bits (442), Expect = 1e-41, Method: Composition-based stats.
Identities = 59/291 (20%), Positives = 113/291 (38%), Gaps = 12/291 (4%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADT-GWTDIAATTAMTSVILEEILGYKTNI 59
M KIL L S A++ + GW+D ATT + S ++++ LGY +
Sbjct: 3 MRKILGAGAALVLAVSSTLAIAET-KTLTIGYVEGWSDSVATTFVASEVIKQKLGYDVKL 61
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ +A + ++++ +D+ + W P ++ + N + AK L V +
Sbjct: 62 QSVAAGIMWQAVATDKLDLMLSAWLPGTHGEYYTKYKD-QVVNYGPNFKDAKIGLIVPEY 120
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
A I+ K KI GI+ G+ + I + G++L +S
Sbjct: 121 VKAKTIEDL----KTDASFNKKITGIDAGSGVMLKTDQAIKDYGLD--GYKLQASSGAGM 174
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+++ R ++ V W PH + + + +L + + G +V V K P
Sbjct: 175 IAELTRAEKTQKAIVVTGWVPHWMFAKWKLRFLEDPKGVYG-AAETVDNVASLGLEKKAP 233
Query: 240 NISRLLKNIKF-SVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+ LK ++ S E+M I + + + + HPD + W
Sbjct: 234 EVVAFLKKFQWASKDEIGEVMLAI-QDGAKPEAAAKDWVAKHPDRVAAWTA 283
>gi|326331222|ref|ZP_08197516.1| putative glycine betaine-binding protein [Nocardioidaceae bacterium
Broad-1]
gi|325950992|gb|EGD43038.1| putative glycine betaine-binding protein [Nocardioidaceae bacterium
Broad-1]
Length = 318
Score = 175 bits (442), Expect = 1e-41, Method: Composition-based stats.
Identities = 71/287 (24%), Positives = 133/287 (46%), Gaps = 4/287 (1%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL-AVPVTFRSLKN 73
+ + + V A+ W D+ + IL + LGY +IK +V ++ +
Sbjct: 32 GFAQSDSGGAEDSVVLAEQPWVDLQVENEVAVQIL-QELGYDASIKKNLSVENAATAVSS 90
Query: 74 KGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL-GIKSYQDIA 132
ID ++G W+PS E ++ G +++++ ++G +Y AV GI+S D+
Sbjct: 91 GQIDAYLGNWWPSQEPSFGDPIDSGEVEVLSTIVKGTEYAPAVPGDVADRLGIESLADLD 150
Query: 133 KYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIP 192
+ G KIYGIE G+ GN+ I I+ + + L ++L+ + A +Q+ + Q+ P
Sbjct: 151 ANGAKFGRKIYGIEAGSPGNETIQKAIDEDAYGLGDWKLVASGTPAMLAQVEKSQKAGQP 210
Query: 193 AVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSV 252
VFL W PH + + +L +++ G G + TV R + D P I+ L N+ FS
Sbjct: 211 IVFLGWSPHWMTVQFDAVFLEDPDKVWG-GAGEIRTVTRKGFEDDNPEIAEFLSNLSFST 269
Query: 253 ALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDP 299
+ + ++ + + +P+ + +L GV DG+
Sbjct: 270 DEAGQFYYDHDKSGKELADIAEAWIDDNPEKVARFLDGVEDADGEKA 316
>gi|298675765|ref|YP_003727515.1| glycine betaine ABC transporter substrate-binding protein
[Methanohalobium evestigatum Z-7303]
gi|298288753|gb|ADI74719.1| Substrate-binding region of ABC-type glycine betaine transport
system [Methanohalobium evestigatum Z-7303]
Length = 306
Score = 175 bits (442), Expect = 1e-41, Method: Composition-based stats.
Identities = 55/303 (18%), Positives = 114/303 (37%), Gaps = 28/303 (9%)
Query: 4 ILAVCLFLTTFSISYARD------------ADSCTPVRFADTGWTDIAATTAMTSVILEE 51
I+ + L + S + +D ++ T W D AT+ M ILE
Sbjct: 12 IICLLLIFSLASSGCMQQNSEQTPNNKEPTSDKSKTIKLGSTTWDDGRATSNMFKHILES 71
Query: 52 ILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAK 111
GY + + ++ L +K +D ++ W P + E + +V GA+
Sbjct: 72 E-GYNVELVYGDLGGVYQGLSDKDLDFYVSAWLPGTQGNYWNRYSE-DLIIVNNLSSGAR 129
Query: 112 YMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
L V + + + + + + +I GIEPG ++ + I+ ++L
Sbjct: 130 TGLVVPSYVP---VDTINGLKENRDKFDGQIQGIEPGAGIMKQTENAISEYNLD---YKL 183
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDL------NIHYLPGGEEISGFGEAS 225
+S +A +++ ++ V W PH S + ++ YL + + G +
Sbjct: 184 QSSSTVAMSTELGDAIKDEEWIVVTLWNPHWSFSRMKQEYGVDLKYLEDPKSVYGESD-D 242
Query: 226 VYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLK 285
+ + R + + P I +L + ++ MM I N + + +P+ +
Sbjct: 243 ITMIAREGFKEDYPKIYKLASDSSMGISEIESMMLDI-ENGMSPADAAQKWIDNNPEKVN 301
Query: 286 NWL 288
WL
Sbjct: 302 KWL 304
>gi|29833258|ref|NP_827892.1| glycine betaine ABC transport system permease protein [Streptomyces
avermitilis MA-4680]
gi|29610380|dbj|BAC74427.1| putative glycine betaine ABC transport system permease protein
[Streptomyces avermitilis MA-4680]
Length = 871
Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats.
Identities = 61/297 (20%), Positives = 111/297 (37%), Gaps = 10/297 (3%)
Query: 9 LFLTTFSISYARDAD---SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP 65
+F T S + A DA+ V W + A+T + +LE+ G++ + K
Sbjct: 318 IFGGTTSSTAASDAENVGQGKKVTIGYIPWDEGVASTFLWQEVLEQR-GFQVDTKQFDAG 376
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
+ SL ID W P+ + + + L+V G+
Sbjct: 377 PLYTSLGQGDIDFQTDSWLPTTHAQYWKKYGK-QLDDLGSWYGPTSLELSVPSY--MKGV 433
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
S D+ + G KI GIE + + K ++++++S A ++++R
Sbjct: 434 DSLADLKGQASKFGGKITGIESSAGMMGLLKTKVLKEYGLDKEYKVVDSSTPAMLAELKR 493
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
P V W PH SD ++ L + G G+ V+T+ R + P + R L
Sbjct: 494 AYAKKDPVVVTLWSPHWAYSDYDLKKLKDPKGAWGKGDG-VHTLARKGFAQDNPVVGRWL 552
Query: 246 KNIKFSVALENEMMKLILNNKQ-DRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSR 301
KN K + + I + +Q R+ L+ +P ++ L V +
Sbjct: 553 KNFKMTEKQLTGLEAEINKAGKGKQQDAVRSWLKRNPGVVDK-LAPVKSATSGAAGE 608
Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats.
Identities = 52/271 (19%), Positives = 108/271 (39%), Gaps = 6/271 (2%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNK 74
S + ++ P+ A W + A T + +L GY N+K + V + L +
Sbjct: 600 SATSGAAGETKRPLDVAWFPWDEDVAVTYLWKNVL-ARRGYTLNLKQMDVGPVYTGLASG 658
Query: 75 GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKY 134
+D+ W P +K + ++ + + +AV +KS D+
Sbjct: 659 DLDLNFDAWLPYAQKNYWDQH-KNDLRDLGTWYKPTSLEIAVPSYV--KDVKSLADLKGK 715
Query: 135 KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAV 194
KI GIEPG + + K +++++ S A ++++R P
Sbjct: 716 GGTFDGKIIGIEPGTGEMNLLKTKVLPGYGLDKEYKVVDGSTPAMLAELKRAYAKKEPVA 775
Query: 195 FLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVAL 254
+ W PH S+ + L +++ G G ++ T+ + ++ P +++ +K+ + S A
Sbjct: 776 VVLWSPHWAYSEYKLTKLADDKKLFGEG-NTIRTISSKQFPERYPQLTKWIKDFRMSEAE 834
Query: 255 ENEMMKLILNNKQDRQ-FVGRTMLRTHPDLL 284
+ I Q + L+ HPD++
Sbjct: 835 LGSLESEIKKRGQGHEQDAVAAWLKEHPDMV 865
>gi|307727874|ref|YP_003911087.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia sp. CCGE1003]
gi|307588399|gb|ADN61796.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia sp. CCGE1003]
Length = 299
Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats.
Identities = 61/291 (20%), Positives = 123/291 (42%), Gaps = 11/291 (3%)
Query: 1 MYKILAV-CLFLTTFSISYARDADSCTPVRFADT-GWTDIAATTAMTSVILEEILGYKTN 58
+ KIL + L + S + AD+ ++ GW D AT+ + + ++E+ LGY+
Sbjct: 18 IRKILVLSTLSAALAASSVSVSADTKPTIKIGYVEGWDDSVATSNVAARVIEKRLGYQVQ 77
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ +A V ++ + +D + W P + + + N AK L V +
Sbjct: 78 LVPVAAGVMWQGVARGDLDATLSAWLPVTHGAYWN-NFKDKVVDLGANFNDAKIGLIVPE 136
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+K+ D+ K E G++I GI+ G Q+ + I ++L+ +S A
Sbjct: 137 NV---DVKTVGDLEAKKAEFGSRIVGIDAGAGVMQKTSEAIKAYGLD---YKLMPSSGSA 190
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+++ R + + P + W+PH + + + +L +++ G E V TVV + K
Sbjct: 191 MTAELARSEAASKPIIVTGWKPHWMFAKYKLKFLDDPKKVFGEAE-HVDTVVNPELEKKA 249
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
P + LK ++ + +M N + + H D + +W+
Sbjct: 250 PQVVSFLKKFQWKPGEIDSVMLA-TQNGEKPTAAADAWIGAHGDRVDSWVK 299
>gi|330942368|gb|EGH44987.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. pisi str. 1704B]
Length = 284
Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats.
Identities = 60/291 (20%), Positives = 113/291 (38%), Gaps = 12/291 (4%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADT-GWTDIAATTAMTSVILEEILGYKTNI 59
M KIL L S A++ + GW+D ATT + S ++++ LGY +
Sbjct: 3 MRKILGAGAALVLAVSSTLAIAET-KTLTIGYVEGWSDSVATTFVASEVIKQKLGYDVKL 61
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ +A + ++++ +D+ + W P ++ + N + AK L V +
Sbjct: 62 QSVAAGIMWQAVATDKLDLMLSAWLPGTHGEYYAKYKD-QVVNYGPNFKDAKIGLIVPEY 120
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
A I+ K KI GI+ G+ + I + G++L +S
Sbjct: 121 VKAKTIEDL----KTDASFNKKITGIDAGSGVMLKTDQAIKDYGLD--GYKLQASSGAGM 174
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+++ R ++ V W PH + + + +L + + G E +V V K P
Sbjct: 175 IAELTRAEKAKKSIVVTGWVPHWMLAKWKLRFLDDPKGVYGEAE-TVDNVGSLGLEKKAP 233
Query: 240 NISRLLKNIKF-SVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+ LK ++ S E+M I + + + HPD + W
Sbjct: 234 EVVAFLKKFQWASKDEIGEVMLAI-QEGAKPEAAAKDWVAKHPDRVAAWTA 283
>gi|293606873|ref|ZP_06689221.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
43553]
gi|292814725|gb|EFF73858.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
43553]
Length = 333
Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats.
Identities = 54/322 (16%), Positives = 107/322 (33%), Gaps = 37/322 (11%)
Query: 15 SISYARDADSCT---PVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSL 71
++ A DA C PV F W + I+E+ G KT +L
Sbjct: 20 GVAQAADAPQCEIKRPVNFGAMNWESNLVLVDVERFIMEKGYGCKTETLPTETLPALAAL 79
Query: 72 KNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA--LGIKSYQ 129
+ +DI W S+ + G +K + + GA + +KS
Sbjct: 80 ERGDLDINTEIWLNSVADPWDRAEKTGKVKRIGDLYMGA-EGWYIPRYTAERLPELKSAA 138
Query: 130 DIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
D+ K+K E + YG G ++ + K + A +
Sbjct: 139 DLPKFKDEFKDPEEPGKGRFYGCPAGWGCEVTSNNLFHALKLDDSYTLYSPGTGAAQKAA 198
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI-----------------SGFGEAS 225
+ + VF W P P+ +++ L S + E
Sbjct: 199 LMSAYKRKQNVVFYYWSPTPLVGAMDLVKLDMPPYDAEKHKCLTSSKCANPQPSAYPENP 258
Query: 226 VYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLK 285
V+T V + + + P ++ L + + + NE + + + + V + L+ PD+
Sbjct: 259 VFTAVNTKFTQEAPKLTEFLSKVSVPLPVINETLAHMEESGDESNAVAKWFLKNKPDVWT 318
Query: 286 NWLIGVTTFDGQDPSRQLERFM 307
W+ D +++++ +
Sbjct: 319 KWVP-------ADVAQRVQTAL 333
>gi|330977840|gb|EGH77743.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. aptata str. DSM 50252]
Length = 284
Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats.
Identities = 60/291 (20%), Positives = 113/291 (38%), Gaps = 12/291 (4%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADT-GWTDIAATTAMTSVILEEILGYKTNI 59
M KIL L S A++ + GW+D ATT + S ++++ LGY +
Sbjct: 3 MRKILGAGAALVLAVSSTLAIAET-KTLTIGYVEGWSDSVATTFVASEVIKQKLGYDVKL 61
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ +A + +++ +D+ + W P ++ + N + AK L V +
Sbjct: 62 QSVAAGIMWQAGATDKLDLMLSAWLPGTHGEYYAKYKD-QVVNYGPNFKDAKIGLIVPEY 120
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
A I+ K KI GI+ G+ + I + G++L +S
Sbjct: 121 VKAKTIEDL----KTDASFNKKITGIDAGSGVMLKTDQAIKDYGLD--GYKLQASSGAGM 174
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+++ R ++ V W PH + + + +L + + G E +V V K P
Sbjct: 175 IAELTRAEKAKKSIVVTGWVPHWMFAKWKLRFLDDPKGVYGEAE-TVDNVGSLGLEKKAP 233
Query: 240 NISRLLKNIKF-SVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+ LK ++ S E+M I + + + + HPD + W
Sbjct: 234 EVVAFLKKFQWASKDEIGEVMLAI-QDGAKPEAAAKDWVAKHPDRVAAWTA 283
>gi|296111716|ref|YP_003622098.1| betaine ABC transporter permease and substrate binding protein
[Leuconostoc kimchii IMSNU 11154]
gi|295833248|gb|ADG41129.1| betaine ABC transporter permease and substrate binding protein
[Leuconostoc kimchii IMSNU 11154]
Length = 568
Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats.
Identities = 60/271 (22%), Positives = 104/271 (38%), Gaps = 11/271 (4%)
Query: 17 SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGI 76
+ + V W A+T + + L + GY + L V ++S+ N +
Sbjct: 307 AMTSHKTTGQKVTLGYVAWDSEVASTNVLAQSLRQH-GYDVTMTPLDNAVLWQSVANGQV 365
Query: 77 DIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKK 136
D + W P K + + I L+ NL GAK V D IA K
Sbjct: 366 DASVSAWLPYTHKALYDKY-KNDISLLGPNLHGAKTGFVVPDYMK------VNSIADLKN 418
Query: 137 ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFL 196
E + GIEPG +++ +LKG++L +S A + + + + +
Sbjct: 419 EANKTVTGIEPGAGAMITAQKTVDSYP-NLKGWQLSSSSSGAMTTALDKAYKAKQDIIVT 477
Query: 197 SWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALEN 256
W PH + S + YL + G E ++ T+VR D P +++ ++
Sbjct: 478 GWSPHWMFSKYKLKYLEDPKGTMGKNE-TINTIVRKDLKHDNPKFEKVMNKFNWTKDDME 536
Query: 257 EMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
+M I N Q + L++H L +W
Sbjct: 537 SVMLDI-QNGQSPEQAANKWLKSHAKLADSW 566
>gi|15965718|ref|NP_386071.1| hypothetical protein SMc04311 [Sinorhizobium meliloti 1021]
gi|15074987|emb|CAC46544.1| ABC transporter, substrate binding protein [Sinorhizobium meliloti
1021]
Length = 332
Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats.
Identities = 48/339 (14%), Positives = 104/339 (30%), Gaps = 39/339 (11%)
Query: 1 MYKILAVCLF-LTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M K+LA + S++ A C V A+ W + ILE G +
Sbjct: 1 MKKLLATLILTAGICSLAGPSGAAECGDVSIAEMDWASAGVAAHVDRFILENGYGCSVKL 60
Query: 60 KLLAVPVTFR-SLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVN 117
+TF + D+ W S+ ++EG + A+ L +G +
Sbjct: 61 VAGDTMLTFTSMNEKAEPDLVPELWINSVRTPFDAAVKEGRLVEGAKILSEGGVEGWWIP 120
Query: 118 DVGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
+K + ++ I+ ++ G
Sbjct: 121 KFIADAHPDIRTVQDALKHPELFPSHENPAKGAIHNCPSSWNCRFSTANLYKALDAEKAG 180
Query: 169 FRLI-EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE---------- 217
F+LI S + I + W P + + L G +
Sbjct: 181 FQLIDPGSAAGLDASITEAFEKKTGWLGYYWAPTALLGKYEMTLLSFGVDHDKAEWDSCT 240
Query: 218 ---------ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQD 268
++ + + VYTVV + D+ + ++ ++ A N+++ + N+
Sbjct: 241 AAPDCPTPKVNSYPVSDVYTVVTKSFADRAGSAMDYVEARQWENATVNKVLAWMDQNQGT 300
Query: 269 RQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ R L ++ W+ + + +++ +
Sbjct: 301 NESAARYFLGNFQEIWTQWVS-------PEVAEKVKAAL 332
>gi|205373054|ref|ZP_03225860.1| glycine betaine-binding protein [Bacillus coahuilensis m4-4]
Length = 284
Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats.
Identities = 56/294 (19%), Positives = 115/294 (39%), Gaps = 15/294 (5%)
Query: 1 MYK---ILAVCLFLTTFSISYARD--ADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M K LA + + + S + FA W + A + M V+LEE GY
Sbjct: 1 MKKKTMTLASMTIAAGMLLGACSEETSSSKGELEFAINNWAENVAVSNMWKVVLEEK-GY 59
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
+ + L + S+ +DI W P ++ ++ I +G +A
Sbjct: 60 EVKLTELEKAGVWTSVAEGDVDIAPEAWLPFTDEPFYKEYKDS-IITGDSWYEGTGLGIA 118
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
V + + +D++ EL KI+GIE G M+ + L+++S
Sbjct: 119 VPTYMSE--VTTLEDLSNVSSELDGKIFGIEAGTSLMDISGTMLEEYNLD---YELVQSS 173
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYL 235
E A +++++ + P W PH ++ +I YL + G + +++ + R +
Sbjct: 174 EPAMLTELKKAMDDESPVAVTLWNPHWAFAEYDIKYLEDPRGVYGEPD-NIHYLAREGFD 232
Query: 236 DKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
P + + + + +MK I ++ + + + + DL+ +W+
Sbjct: 233 KDYPEVFDAFEAWELNDDQLGTLMKYIEDS--SPEEGAKKWVEENQDLITSWME 284
>gi|254453141|ref|ZP_05066578.1| glycine betaine/proline ABC transporter, periplasmic glycine
betaine/proline-binding protein [Octadecabacter
antarcticus 238]
gi|198267547|gb|EDY91817.1| glycine betaine/proline ABC transporter, periplasmic glycine
betaine/proline-binding protein [Octadecabacter
antarcticus 238]
Length = 323
Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats.
Identities = 50/313 (15%), Positives = 97/313 (30%), Gaps = 22/313 (7%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M +I+ F + + A D C V W A TA++ ++E+ G +
Sbjct: 1 MKRIIIGAAFAALAAPTAALAQDQCGEVTITQMNWDSAAIVTAVSKFLMEQGYGCDVTVV 60
Query: 61 LLAVPVTFRS-LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQ-GAKYMLAVND 118
S +N DI W S + E+G I+ + L G +
Sbjct: 61 PSDTTPAMTSLSENNEPDIVTELWVNSAGEAYTKLREDGMIEELGSVLDPGGVEGWWLPT 120
Query: 119 VG--FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR-LIEAS 175
+ + I + +G G ++I G S
Sbjct: 121 YLIEAHPELATIDGIMANPELVGGMFNNCPDGWGCRIVNDNLIRALDLEDSGIEVFNHGS 180
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG-----------------EEI 218
+ + ++ P W P ++ + G +
Sbjct: 181 GETLATSMAAAYQSEEPWFGYYWGPTTPLGMFDMTSIDLGEYDEAVHAANQNADAPDPGV 240
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLR 278
S F A V T+V D+++ P+++ L+ N+ F ++++ +N + L
Sbjct: 241 SAFPAAPVLTIVTKDFMETRPDVAELMGNVTFKTDTMSQLLAWKEDNNASNEEAAVYFLS 300
Query: 279 THPDLLKNWLIGV 291
+PD W+
Sbjct: 301 NNPDEWSGWINDA 313
>gi|312958479|ref|ZP_07772999.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas fluorescens WH6]
gi|311287022|gb|EFQ65583.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas fluorescens WH6]
Length = 321
Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats.
Identities = 53/329 (16%), Positives = 109/329 (33%), Gaps = 32/329 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDAD----SCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
M K L LF S A S PV+FA W T + +LE+ G K
Sbjct: 3 MNKTLLTTLFSAGLLASSGAYAAGWCESGKPVKFAGLNWESGMLLTDILQTVLEKGYGCK 62
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
T+ +L + I +F W + + G + V + GA V
Sbjct: 63 TDSLPGNSITMENALSSNDIQVFAEEWV-GRSEVWNKAEKAGKVVGVGAPIVGAIEGWYV 121
Query: 117 NDV-----------GFALGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDM 158
A +K+ D+ KY + Y G +M
Sbjct: 122 PRYVIEGDAKRKLAAKAPDLKNIADLTKYAAVFKDPEEPSKGRFYNCPAGWTCELDNSEM 181
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ + + A + + + P +F W P P+ +++ L +
Sbjct: 182 LKSYGLESTYTNFRPGTGPALDAAVLSSYKRGEPILFYYWSPTPLMGQVDLVKLEEKPGV 241
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLR 278
S+ + + ++ P + +L+ + + L N+ + + + + + + L+
Sbjct: 242 DKTV--SIKVGLSKTFHEQAPELVAVLEKVNLPIDLLNQNLGRMAKERIESPKLAKIFLK 299
Query: 279 THPDLLKNWLIGVTTFDGQDPSRQLERFM 307
HP++ W+ D +++++ +
Sbjct: 300 EHPEVWHAWVS-------DDAAKKIDAAL 321
>gi|126665900|ref|ZP_01736881.1| glycine betaine/proline ABC transporter, periplasmic glycine
betaine/proline-binding protein [Marinobacter sp. ELB17]
gi|126629834|gb|EBA00451.1| glycine betaine/proline ABC transporter, periplasmic glycine
betaine/proline-binding protein [Marinobacter sp. ELB17]
Length = 322
Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats.
Identities = 51/315 (16%), Positives = 98/315 (31%), Gaps = 24/315 (7%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K+ V L + + A C V W A T + + I+E+ G +
Sbjct: 1 MRKLTPVALLCA--LSAPSLAAAECGEVSITQMSWASNAVVTGVATFIMEQGYGCDVTVI 58
Query: 61 LLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQ-GAKYMLAVND 118
P +N DI W S + E+G IK VAE L G +
Sbjct: 59 PSDTVPAVTSVAENGEPDIVTELWLNSAGEAYLRLEEQGKIKRVAEVLDPGGIEGWWIPT 118
Query: 119 VGFA--LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG-FRLIEAS 175
+K+ + I + + ++ G +++ G S
Sbjct: 119 YLAEKHPELKTIEGIMANPELVDSRFNNCPSGWGCRVVSDNLVRALDLEASGITVFDHGS 178
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIH-----------------YLPGGEEI 218
+ + ++ P W P ++ + +
Sbjct: 179 GETLATSMASAVQSEEPWFGYYWGPTVPLGKYDMTRVKIGDYKPEVHTRNQTQMADNPGV 238
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLR 278
S F A++ T V + + ++ P + +L N+ F + + ++ + N + L
Sbjct: 239 SEFPAATILTAVTTSFGEREPEVVEMLGNMTFKTSTMSALLAWMDENNASAEEAAVYFLS 298
Query: 279 THPDLLKNWLIGVTT 293
+ D +WL T
Sbjct: 299 NNTDEWSSWLNASAT 313
>gi|71734384|ref|YP_273751.1| amino acid ABC transporter permease [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|257485979|ref|ZP_05640020.1| amino acid ABC transporter, permease protein [Pseudomonas syringae
pv. tabaci ATCC 11528]
gi|289624175|ref|ZP_06457129.1| amino acid ABC transporter, permease protein [Pseudomonas syringae
pv. aesculi str. NCPPB3681]
gi|289651662|ref|ZP_06483005.1| amino acid ABC transporter, permease protein [Pseudomonas syringae
pv. aesculi str. 2250]
gi|298486069|ref|ZP_07004139.1| Glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline- binding/permease protein [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
gi|71554937|gb|AAZ34148.1| amino acid ABC transporter, permease protein [Pseudomonas syringae
pv. phaseolicola 1448A]
gi|298159417|gb|EFI00468.1| Glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline- binding/permease protein [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
gi|320325425|gb|EFW81490.1| amino acid ABC transporter, permease protein [Pseudomonas syringae
pv. glycinea str. B076]
gi|320327434|gb|EFW83447.1| amino acid ABC transporter, permease protein [Pseudomonas syringae
pv. glycinea str. race 4]
gi|330869347|gb|EGH04056.1| amino acid ABC transporter permease [Pseudomonas syringae pv.
aesculi str. 0893_23]
gi|330877347|gb|EGH11496.1| amino acid ABC transporter permease [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330988643|gb|EGH86746.1| amino acid ABC transporter permease [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331010311|gb|EGH90367.1| amino acid ABC transporter permease [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 284
Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats.
Identities = 59/291 (20%), Positives = 113/291 (38%), Gaps = 12/291 (4%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADT-GWTDIAATTAMTSVILEEILGYKTNI 59
M KIL L S A++ + GW+D ATT + S ++++ LGY +
Sbjct: 3 MRKILGAGAALVLAVSSTLAIAET-KTLTIGYVEGWSDSVATTFVASEVIKQKLGYDVKL 61
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ +A + ++++ +D+ + W P ++ + N + AK L V +
Sbjct: 62 QSVAAGIMWQAVATDKLDLMLSAWLPGTHGEYYTKYKD-QVVNYGPNFKDAKIGLIVPEY 120
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
A I+ K KI GI+ G+ + I + G++L +S
Sbjct: 121 VKAKTIEDL----KTDASFNKKITGIDAGSGVMLKTDQAIKDYGLD--GYKLQASSGAGM 174
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+++ R ++ V W PH + + + +L + + G +V V K P
Sbjct: 175 IAELTRAEKAQKAIVVTGWVPHWMFAKWKLRFLEDPKGVYG-AAETVDNVASLGLEKKAP 233
Query: 240 NISRLLKNIKF-SVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+ LK ++ S E+M I + + + + HPD + W
Sbjct: 234 EVVAFLKKFQWASKDEIGEVMLAI-QDGAKPEAAAKDWVAKHPDRVAAWTA 283
>gi|291443497|ref|ZP_06582887.1| LOW QUALITY PROTEIN: glycine betaine transport system permease
protein [Streptomyces roseosporus NRRL 15998]
gi|291346444|gb|EFE73348.1| LOW QUALITY PROTEIN: glycine betaine transport system permease
protein [Streptomyces roseosporus NRRL 15998]
Length = 866
Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats.
Identities = 53/288 (18%), Positives = 108/288 (37%), Gaps = 9/288 (3%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNK 74
+ + + W + A+T + +LE+ G++ ++K + + N
Sbjct: 327 TAGKSARIGDGKKISIGYIPWDEGIASTFLWKEMLEQR-GFEVDVKQYEAGALYTGMANG 385
Query: 75 GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKY 134
ID W P ++ ++ + LAV ++S +D+
Sbjct: 386 QIDFQTDSWLPVTHASYWKKYQD-RLEDMGSWYAPTSLELAVPAY--MKDVQSMEDLKGR 442
Query: 135 KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAV 194
E +I GIEP + D + K ++LI+ S + ++++R P V
Sbjct: 443 ASEFKGRIVGIEPSAGEMGLLKDKLLPGYGLDKEYKLIDGSTPSMLAELKRAYAKKEPIV 502
Query: 195 FLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVAL 254
W PH +D ++ L + + G G+ ++T+ R + + P +++ LK+ K +
Sbjct: 503 VPLWSPHWAYNDFDLTKLKDPKGLWGKGDG-IHTLARKGFSQENPEVAKWLKSFKMTEKQ 561
Query: 255 ENEMMKLILNNK-QDRQFVGRTMLRTHPDLLKNWL---IGVTTFDGQD 298
+ I Q RT L+ +P + W G+D
Sbjct: 562 LTSLEAEIQKAGSGKEQEAVRTWLKDNPGVADKWSPVPKDAKAAGGKD 609
Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats.
Identities = 45/266 (16%), Positives = 100/266 (37%), Gaps = 6/266 (2%)
Query: 17 SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGI 76
+ + + A W + A T + +LEE GY N+K V + ++ I
Sbjct: 604 AAGGKDERDRALEVAWFPWEEDIAATYLWKAVLEER-GYTINLKQFEVGPMYAAMSRGQI 662
Query: 77 DIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKK 136
D+ W P +K + + + +AV D +K+ D+
Sbjct: 663 DVQFDGWLPYTQKNYWDKYGD-KLTDIGSWYGPTSIEVAVPDYV--KDVKTLDDLKGKGS 719
Query: 137 ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFL 196
+ +I GIEPG + + + K + ++++S ++++R P L
Sbjct: 720 DFKGRIVGIEPGTATMENLKKNVLPQYGLDKEYEVVDSSTPGMLAELKRAYAKKEPIAVL 779
Query: 197 SWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALEN 256
W PH ++ + L ++ G G+ ++T+ ++ + P +++ K+ K +
Sbjct: 780 LWTPHWAYNEYGMTKLKDPKKAFGDGD-RLHTIASKEFPKQYPQLTKWFKDFKLTEKQLG 838
Query: 257 EMMKLILNNKQD-RQFVGRTMLRTHP 281
+ I + + + +P
Sbjct: 839 GLENEIQKRGAGHEEEAVKAWMDDNP 864
>gi|327441542|dbj|BAK17907.1| ABC-type proline/glycine betaine transport systems, periplasmic
component [Solibacillus silvestris StLB046]
Length = 287
Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats.
Identities = 56/278 (20%), Positives = 100/278 (35%), Gaps = 11/278 (3%)
Query: 14 FSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKN 73
+ S + V A W A+T + +LE+ LGY + L + + +L N
Sbjct: 20 AACSSEAEGTEKQAVNLAYVEWETEVASTHVVGQVLED-LGYDVTLTPLDNGIMWEALAN 78
Query: 74 KGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAK 133
+D + W P +G I + ENL G K L V I
Sbjct: 79 GEVDGMVSAWLPQTHAPQVEKY-KGRIDDLGENLLGGKIGLVVPSYM------DVDSIED 131
Query: 134 YKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPA 193
E G I GIEPG +L+G+ ++ +S +A +++ N
Sbjct: 132 LTDEAGKTITGIEPGANITGTTEKAYEIYP-NLEGWTVLSSSSVAMTGALKQAIENKEEI 190
Query: 194 VFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVA 253
+ W PH + ++ YL + E + T R+ + + P +L N ++
Sbjct: 191 IVTGWSPHWKFNLFDLKYLDDPKG-MYGTEEYIGTFARNGFKEDNPEAYSVLDNFHWTPE 249
Query: 254 LENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGV 291
+M I+ D + + + + + +W V
Sbjct: 250 DIESVMYDIM-EGMDPKDAAKKWIEENEAKVADWTKEV 286
>gi|224555769|gb|ACN56472.1| GbsU [Halobacillus halophilus DSM 2266]
Length = 299
Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats.
Identities = 59/297 (19%), Positives = 115/297 (38%), Gaps = 19/297 (6%)
Query: 4 ILAVCLFLTTFSISYAR-----------DADSCTPVRFADTGWTDIAATTAMTSVILEEI 52
ILA+ + + + W + A T M VILE+
Sbjct: 11 ILAILMIAVLAACGSNGEEANSEQTGTESEAKDKELTIGQVNWAENIAVTNMWKVILEDK 70
Query: 53 LGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKY 112
GY + L + T ++L++ +D + W P + ++ A AK
Sbjct: 71 -GYNLKLNNLNMGSTMKALESGDLDASLEIWLPVQDANYLEKYQDTVNFSDATWYDKAKV 129
Query: 113 MLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
L V + S +D+ ++K+ ++I G PG + D+I + + F L+
Sbjct: 130 GLVVPAYVEE--VNSVEDLNEHKEMFNSEIVGFGPGAGTMEVTEDLIKDYELD---FELL 184
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRS 232
+SE A ++I +N P V W PH + S ++ +L + G G ++ R
Sbjct: 185 SSSESAMLAEIGEAVKNEEPIVAPLWSPHWVFSKYDLKFLDDPQNTYG-GVEKIHHATRQ 243
Query: 233 DYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+ ++ P +S KN K E+++ + ++ + + + DL+ W+
Sbjct: 244 GFEEEYPEVSEWFKNWKMDEQQIGELIEYV-EGAEEPIDGAKKWVEENQDLIDEWVK 299
>gi|302337419|ref|YP_003802625.1| substrate-binding region of ABC-type glycine betaine transporter
[Spirochaeta smaragdinae DSM 11293]
gi|301634604|gb|ADK80031.1| Substrate-binding region of ABC-type glycine betaine transport
system [Spirochaeta smaragdinae DSM 11293]
Length = 300
Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats.
Identities = 63/306 (20%), Positives = 116/306 (37%), Gaps = 25/306 (8%)
Query: 1 MY---KILAVCLFLTTFSISYARDADSC---------------TPVRFADTGWTDIAATT 42
M K+L + +T D W + A T
Sbjct: 1 MKFTNKLLLALMAVTLVFAVSCSQKDEKAGESASAKGAASAEEKTAELVYVNWAEGVAFT 60
Query: 43 AMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKL 102
+ V+LE+ +GY I V + S+ D FM W P L K ++ I
Sbjct: 61 NLAKVVLEDKMGYDVTITATDVAPGYVSIAQGDKDAFMETWLPVLHKDYYDEYKD-DIVD 119
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
+ +G + L V + I ++ K +LG KI GI+ G + ++I
Sbjct: 120 LGHVFEGTQSGLVVPAY---MSIDKISELNSIKDDLGGKITGIDAGAGVMKTTEEVIELY 176
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
L L+ +S A + ++ P V W PH + ++ +L + + +G
Sbjct: 177 DLDL---SLMSSSGPAMAAALKDAYAKKEPIVVTGWTPHWMFGKWDLKFLQQDPDKTVWG 233
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPD 282
+ +++ + R + + P ++ L N+ F A ++M I + D + V R + H D
Sbjct: 234 KGNIHIMARKNIREDKPTLATFLSNMFFDEAQLGDLMVKIEESDDDIEVVTRQWMSDHSD 293
Query: 283 LLKNWL 288
L+ +W+
Sbjct: 294 LIDSWI 299
>gi|295702998|ref|YP_003596073.1| glycine/betaine ABC transporter glycine/betaine-binding protein
OpuAC [Bacillus megaterium DSM 319]
gi|294800657|gb|ADF37723.1| glycine/betaine ABC transporter, glycine/betaine-binding protein
OpuAC [Bacillus megaterium DSM 319]
Length = 287
Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats.
Identities = 59/294 (20%), Positives = 121/294 (41%), Gaps = 13/294 (4%)
Query: 1 MYKILAVCLFLTTFSISYARDAD-----SCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M K+L + + I+ A + +T+ A T + ILE+ GY
Sbjct: 1 MKKLLLISMICFLLVITSACGNGNGAFKDKKTITIGMNNYTENIAYTYVWKHILEDR-GY 59
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
K L + N IDI W P+ + ++ + + L+ A+ A
Sbjct: 60 KVRTVFLEKAGVWVGTANDDIDISFAPWLPTTDAPFYKKYKD-QVNIEDPWLKNARLGFA 118
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
V + + +D+AK ++ K+ GI+PG+ N + + K + L+++S
Sbjct: 119 VPTY--MKDVNTTEDLAKVASDVDNKVIGIDPGSSINGLAEQALKDYNL--KNYMLVKSS 174
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYL 235
E A S++R+ P V W PH +D +I YL + G + ++YT+ ++
Sbjct: 175 EAAMLSELRKAYDAKKPIVVTMWNPHWAFADFDIKYLKDPKNSFGDPD-NIYTMTSKEFK 233
Query: 236 DKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
P + + + N + + L + ++ + + + + + ++ H L+ +W
Sbjct: 234 KTNPQVIKWMNNAQMNDKLISPLLSQVEKS-SNPEEAAQKWVKKHKKLIDSWTK 286
>gi|239940068|ref|ZP_04692005.1| putative glycine betaine ABC transporter substrate-binding and
permease component [Streptomyces roseosporus NRRL 15998]
Length = 867
Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats.
Identities = 53/288 (18%), Positives = 108/288 (37%), Gaps = 9/288 (3%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNK 74
+ + + W + A+T + +LE+ G++ ++K + + N
Sbjct: 327 TAGKSARIGDGKKISIGYIPWDEGIASTFLWKEMLEQR-GFEVDVKQYEAGALYTGMANG 385
Query: 75 GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKY 134
ID W P ++ ++ + LAV ++S +D+
Sbjct: 386 QIDFQTDSWLPVTHASYWKKYQD-RLEDMGSWYAPTSLELAVPAY--MKDVQSMEDLKGR 442
Query: 135 KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAV 194
E +I GIEP + D + K ++LI+ S + ++++R P V
Sbjct: 443 ASEFKGRIVGIEPSAGEMGLLKDKLLPGYGLDKEYKLIDGSTPSMLAELKRAYAKKEPIV 502
Query: 195 FLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVAL 254
W PH +D ++ L + + G G+ ++T+ R + + P +++ LK+ K +
Sbjct: 503 VPLWSPHWAYNDFDLTKLKDPKGLWGKGDG-IHTLARKGFSQENPEVAKWLKSFKMTEKQ 561
Query: 255 ENEMMKLILNNK-QDRQFVGRTMLRTHPDLLKNWL---IGVTTFDGQD 298
+ I Q RT L+ +P + W G+D
Sbjct: 562 LTSLEAEIQKAGSGKEQEAVRTWLKDNPGVADKWSPVPKDAKAAGGKD 609
Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats.
Identities = 45/266 (16%), Positives = 100/266 (37%), Gaps = 6/266 (2%)
Query: 17 SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGI 76
+ + + A W + A T + +LEE GY N+K V + ++ I
Sbjct: 604 AAGGKDERDRALEVAWFPWEEDIAATYLWKAVLEER-GYTINLKQFEVGPMYAAMSRGQI 662
Query: 77 DIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKK 136
D+ W P +K + + + +AV D +K+ D+
Sbjct: 663 DVQFDGWLPYTQKNYWDKYGD-KLTDIGSWYGPTSIEVAVPDYV--KDVKTLDDLKGKGS 719
Query: 137 ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFL 196
+ +I GIEPG + + + K + ++++S ++++R P L
Sbjct: 720 DFKGRIVGIEPGTATMENLKKNVLPQYGLDKEYEVVDSSTPGMLAELKRAYAKKEPIAVL 779
Query: 197 SWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALEN 256
W PH ++ + L ++ G G+ ++T+ ++ + P +++ K+ K +
Sbjct: 780 LWTPHWAYNEYGMTKLKDPKKAFGDGD-RLHTIASKEFPKQYPQLTKWFKDFKLTEKQLG 838
Query: 257 EMMKLILNNKQD-RQFVGRTMLRTHP 281
+ I + + + +P
Sbjct: 839 GLENEIQKRGAGHEEEAVKAWMDDNP 864
>gi|227820571|ref|YP_002824542.1| amino acid ABC transporter substrate-binding protein [Sinorhizobium
fredii NGR234]
gi|227339570|gb|ACP23789.1| probable amino acid ABC transporter, substrate-binding protein
[Sinorhizobium fredii NGR234]
Length = 331
Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats.
Identities = 45/339 (13%), Positives = 94/339 (27%), Gaps = 40/339 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M ILA + A A+ C V A+ W + +LE G
Sbjct: 1 MRHILAFSALALVMGAASAAKAE-CGTVTVANMNWQSGELLANVDKFVLEHGFGCDVEFI 59
Query: 61 LLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVND 118
P ++ DI W + + + EEG I + + L G + V
Sbjct: 60 PGDTVPTITSMVEKGEPDIAGEAWVDLVPEIVKRGTEEGRIVQIGQALSDGGEQGWYVPK 119
Query: 119 VGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
+ + + I+ G+ G+ + + K F
Sbjct: 120 FIVDAHPGIKTVDDALGHPELFPDPEDASKGAIFNGPQGSGGSVVGGQLFKAYAGTSKNF 179
Query: 170 RLI-EASELASFSQIRRDQRNNIPAVFLSWEPHPI-------------------NSDLNI 209
+L+ ++ + + + W P + N
Sbjct: 180 KLVDPGTQAGLDGALTKAYERKEGWLGYYWSPTALLGKYPMVRLEAGVPHDATEWKRCNT 239
Query: 210 HYLPGGEEISGFGEASVYTVVRSDYLD-KCPNISRLLKNIKFSVALENEMMKLILNNKQD 268
+ + + V T++ P++ L + N +M + +
Sbjct: 240 KADCPDPRKNEWPKDHVATLISKKLATGNNPDVVAYLSKRSWDNETVNSVMSWMTETQAG 299
Query: 269 RQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ L+ H DL W+ +D + +++ +
Sbjct: 300 GEDGAVHFLKEHKDLWTTWVP-------EDVAEKIQAAL 331
>gi|282864305|ref|ZP_06273361.1| Substrate-binding region of ABC-type glycine betaine transport
system [Streptomyces sp. ACTE]
gi|282560792|gb|EFB66338.1| Substrate-binding region of ABC-type glycine betaine transport
system [Streptomyces sp. ACTE]
Length = 879
Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats.
Identities = 57/297 (19%), Positives = 103/297 (34%), Gaps = 12/297 (4%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNK 74
S + A D + W + A+T + ILE+ G+ T + L + +
Sbjct: 329 SQAAAGDVGKGQKINMGYIPWDEGIASTFLWKEILEQR-GFDTGVTQLDAGPLYSGVARG 387
Query: 75 GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKY 134
ID W P+ K + ++ L V GI S +D+
Sbjct: 388 DIDFQTDAWLPTTHKDYWDKYSD-QLEDYGSWYGPTSLELTVPSYV--KGIDSLEDLKGQ 444
Query: 135 KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAV 194
K+ KI GIE + + + ++ +S + +++ + P V
Sbjct: 445 GKKFNGKIIGIEASAGMMGTLNKQVLKEYGLEGEYEVVSSSTSSMLAELNASIKKKEPVV 504
Query: 195 FLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVAL 254
W PH ++ L + G GE V+TV + +K P ++ LKN + +
Sbjct: 505 VTLWSPHWAYGAHDLKKLKDPKGAWGKGE-EVHTVAHKGFAEKSPVVADWLKNFELTEKQ 563
Query: 255 ENEMMKLILNNKQ-DRQFVGRTMLRTHPDLLKNWL------IGVTTFDGQDPSRQLE 304
+ I Q Q R L+ +PD++ G G+D + +
Sbjct: 564 LTGLENKIQEAGQGKEQDGVRAWLKENPDVVDKAAPLPAGSDGGRPAQGKDAGKTVN 620
Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats.
Identities = 57/275 (20%), Positives = 105/275 (38%), Gaps = 7/275 (2%)
Query: 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDI 78
A+ D+ V W + A+T + +LE+ GYKT +K L + L +D+
Sbjct: 610 AQGKDAGKTVNMGYFPWDEAIASTYLWQNMLEDR-GYKTTVKQLDPGPLYTGLAQGQLDV 668
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL 138
W P+ K ++ ++ + L V GI S +D+ K+
Sbjct: 669 QFDSWLPTTHKDYWNRYKD-NLTDLGSWYGPTSLELTVPSYV--KGIDSLEDLKGQGKKF 725
Query: 139 GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
KI GIE + + + ++ +S + +++ R + P V W
Sbjct: 726 NGKIIGIESSAGMMGTLNKQVLKAYGLEGEYEVVSSSTSSMLAELNRSIKKKEPVVVTLW 785
Query: 199 EPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEM 258
PH ++ L + G GE ++TV + D+ P ++ LK+ K S +
Sbjct: 786 SPHWAYGAHDLKKLEDPKGAWGEGE-QIHTVAKKDFAKDFPELTGWLKDFKLSEDQLASL 844
Query: 259 MKLILNNKQ-DRQFVGRTMLRTHPDLLKNWLIGVT 292
+ + R + HPD+++ L VT
Sbjct: 845 EVELQKGGAGKEKESARHWMDAHPDVVEQ-LTPVT 878
>gi|167042040|gb|ABZ06776.1| putative Substrate binding domain of ABC-type glycine betaine
transport system [uncultured marine microorganism
HF4000_141F21]
Length = 354
Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats.
Identities = 44/343 (12%), Positives = 100/343 (29%), Gaps = 44/343 (12%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
KI+ + F+ +C V A W + ILE+ G + +
Sbjct: 19 KKIILSAVIALGFTAFGGIANAACGKVVVASQNWASAELMAEVDKFILEKGYGCEVELIP 78
Query: 62 LAVPVTFR-SLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAVND- 118
A TF + D+ W ++ + +EEG + + + G +
Sbjct: 79 GATMPTFTSMDEKGAPDMNPEQWANAVYIPLIKAVEEGRLVIANKAPITGLGEGWWLTPG 138
Query: 119 ----------VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
+ ++ + + G G + + KG
Sbjct: 139 SIEKHPELKGMTAVEILEHPEWFPYKEDSSKGAFVGCPAGWGCQLANAQLFRAFEMEKKG 198
Query: 169 FRLI-EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLN------------------- 208
+ L+ S I + + P + W P I
Sbjct: 199 WVLVDPGSAAGLDGSISKAAESGNPWLGYYWNPTSIVGKYGLIQLDFGVPFAGRENWDKC 258
Query: 209 ---IHYLPGGEEISGFGEASVYTVVRSDYLDKCP-NISRLLKNIKFSVALENEMMKLILN 264
+ S + E+ V T++ + + + +I + + + + + N M+ + +
Sbjct: 259 IAVAEQDCADPKPSAWTESEVNTIITTKFAKQGGKDIVKYIGDRTYPGIVMNGMLVYMAD 318
Query: 265 NKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
N+ L H D+ W+ D +++++ +
Sbjct: 319 NQAGGSDAAIEFLSKHEDVWTKWVS-------SDVAKKVKTGL 354
>gi|170695641|ref|ZP_02886784.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia graminis C4D1M]
gi|170139440|gb|EDT07625.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia graminis C4D1M]
Length = 285
Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats.
Identities = 61/291 (20%), Positives = 123/291 (42%), Gaps = 11/291 (3%)
Query: 1 MYKILAV-CLFLTTFSISYARDADSCTPVRFADT-GWTDIAATTAMTSVILEEILGYKTN 58
+ KIL + L + S + AD+ ++ GW D AT+ + + ++E+ LGY+
Sbjct: 4 IRKILVLSTLSAALAASSVSVSADTKPTIKIGYVEGWDDSVATSNVAARVIEKRLGYQVQ 63
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ +A V ++ + +D + W P + + + N AK L V D
Sbjct: 64 LVPVAAGVMWQGVARGDLDATLSAWLPVTHGAYWN-NFKEKVVDLGPNFNDAKIGLIVPD 122
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+K+ D+ K E G++I GI+ G Q+ + I ++L+ +S A
Sbjct: 123 NL---DVKTVGDLEAKKAEFGSRIVGIDAGAGVMQKTSEAIKAYGLD---YKLMPSSGSA 176
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+++ R + + P + W+PH + + + +L +++ G E V +VV + K
Sbjct: 177 MTAELARSEAASKPIIVTGWKPHWMFAKYKLKFLEDPKKVFGEAE-HVDSVVNPELEKKA 235
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
P + LK ++ + +M N + + H D + +W+
Sbjct: 236 PQVVAFLKKFQWKPGEIDSVMLA-TQNGEKPTAAADAWIGAHSDRVDSWVK 285
>gi|157960086|ref|YP_001500120.1| substrate-binding region of ABC-type glycine betaine transport
system [Shewanella pealeana ATCC 700345]
gi|157845086|gb|ABV85585.1| Substrate-binding region of ABC-type glycine betaine transport
system [Shewanella pealeana ATCC 700345]
Length = 334
Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats.
Identities = 55/340 (16%), Positives = 104/340 (30%), Gaps = 38/340 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M +IL + L + + C V AD W+ + + ILE + +
Sbjct: 1 MKRILLIGGLLLSSVTHQTFAEERCGKVTIADMNWSSASLIANVDRFILEHGYDCEAELI 60
Query: 61 LLAVPVTFRSL-KNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVND 118
T S+ + DI W S+++ I + + + + +L G + V
Sbjct: 61 PGDTMPTSTSMVEKGEPDIAPEIWSNSVKELIEKAVNDKRLIIAGNSLSDGGEEGFWVPQ 120
Query: 119 VGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
I + + + YG G ++ K GF
Sbjct: 121 YMVDKDPSLKTIQGVIANVKTFEHPEDPDRGAFYGCPAGWGCQLSAENLFRALKLGDAGF 180
Query: 170 RLI-EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG------------- 215
LI S I R P W P + + + G
Sbjct: 181 DLIDPGSGAGLAGSIARAYERQQPWFGYYWAPTAVLGKYKMVKVDFGSGVDTEHFRDCTS 240
Query: 216 ------EEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDR 269
+++ + A V TV + + DK + + L + A N ++ + NN+ D
Sbjct: 241 QVECAAPKVTMYPAALVQTVTTAAFADKSTSAFKYLSKRALTNAQMNSLLAWMENNQADG 300
Query: 270 QFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMNN 309
L H D+ W+ + + +++ + N
Sbjct: 301 TIAAEYFLINHQDIWLEWVP-------ANVATKVKLAIAN 333
>gi|239986557|ref|ZP_04707221.1| putative glycine betaine ABC transporter substrate-binding and
permease component [Streptomyces roseosporus NRRL 11379]
Length = 873
Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats.
Identities = 53/288 (18%), Positives = 108/288 (37%), Gaps = 9/288 (3%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNK 74
+ + + W + A+T + +LE+ G++ ++K + + N
Sbjct: 327 TAGKSARIGDGKKISIGYIPWDEGIASTFLWKEMLEQR-GFEVDVKQYEAGALYTGMANG 385
Query: 75 GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKY 134
ID W P ++ ++ + LAV ++S +D+
Sbjct: 386 QIDFQTDSWLPVTHASYWKKYQD-RLEDMGSWYAPTSLELAVPAY--MKDVQSMEDLKGR 442
Query: 135 KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAV 194
E +I GIEP + D + K ++LI+ S + ++++R P V
Sbjct: 443 ASEFKGRIVGIEPSAGEMGLLKDKLLPGYGLDKEYKLIDGSTPSMLAELKRAYAKKEPIV 502
Query: 195 FLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVAL 254
W PH +D ++ L + + G G+ ++T+ R + + P +++ LK+ K +
Sbjct: 503 VPLWSPHWAYNDFDLTKLKDPKGLWGKGDG-IHTLARKGFSQENPEVAKWLKSFKMTEKQ 561
Query: 255 ENEMMKLILNNK-QDRQFVGRTMLRTHPDLLKNWL---IGVTTFDGQD 298
+ I Q RT L+ +P + W G+D
Sbjct: 562 LTSLEAEIQKAGSGKEQEAVRTWLKDNPGVADKWSPVPKDAKAAGGKD 609
Score = 149 bits (377), Expect = 4e-34, Method: Composition-based stats.
Identities = 45/271 (16%), Positives = 101/271 (37%), Gaps = 6/271 (2%)
Query: 17 SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGI 76
+ + + A W + A T + +LEE GY N+K V + ++ I
Sbjct: 604 AAGGKDERDRALEVAWFPWEEDIAATYLWKAVLEER-GYTINLKQFEVGPMYAAMSRGQI 662
Query: 77 DIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKK 136
D+ W P +K + + + +AV D +K+ D+
Sbjct: 663 DVQFDGWLPYTQKNYWDKYGD-KLTDIGSWYGPTSIEVAVPDYV--KDVKTLDDLKGKGS 719
Query: 137 ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFL 196
+ +I GIEPG + + + K + ++++S ++++R P L
Sbjct: 720 DFKGRIVGIEPGTATMENLKKNVLPQYGLDKEYEVVDSSTPGMLAELKRAYAKKEPIAVL 779
Query: 197 SWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALEN 256
W PH ++ + L ++ G G+ ++T+ ++ + P +++ K+ K +
Sbjct: 780 LWTPHWAYNEYGMTKLKDPKKAFGDGD-RLHTIASKEFPKQYPQLTKWFKDFKLTEKQLG 838
Query: 257 EMMKLILNNKQD-RQFVGRTMLRTHPDLLKN 286
+ I + + + +P +
Sbjct: 839 GLENEIQKRGAGHEEEAVKAWMDDNPGIADT 869
>gi|169826842|ref|YP_001697000.1| glycine betaine ABC transporter glycine betaine-binding protein
[Lysinibacillus sphaericus C3-41]
gi|168991330|gb|ACA38870.1| glycine betaine ABC transporter glycine betaine-binding protein
[Lysinibacillus sphaericus C3-41]
Length = 291
Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats.
Identities = 58/294 (19%), Positives = 104/294 (35%), Gaps = 16/294 (5%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
+ CL L S + A W A+T + +LE LGY + L
Sbjct: 12 FVFSCLLLLAACGSADAGTKDKKEINLAYVEWDTEVASTHVVGQVLE-NLGYDVTLTPLD 70
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+ + +L N +D + W P ++ I+ + ENL GAK L V
Sbjct: 71 NGIMWEALANGEVDGMVSAWLPQTHAPQVEKYKD-KIENLGENLTGAKIGLVVPSYM--- 126
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
I + I GIEPG + +L+G+ ++ +S A + +
Sbjct: 127 ---DVNSIEDLTTQANKTITGIEPGANMMATTENAYKEYP-NLEGWNVLTSSAGAMTAAL 182
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
+ N+ + W PH I + ++ YL + + G E + T R +
Sbjct: 183 SQAISNHDEIIITGWSPHWIFNAYDLKYLEDPKGLYGTEEY-IGTFARKGLKEDASEAYD 241
Query: 244 LLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQ 297
+L ++ +M I+ + + + D + +W T DG+
Sbjct: 242 VLDRFYWTAEDIESVMFDIM-EGMSATEAAKKWINDNQDKVADW-----TKDGK 289
>gi|269963033|ref|ZP_06177370.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269832276|gb|EEZ86398.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 330
Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats.
Identities = 45/320 (14%), Positives = 99/320 (30%), Gaps = 38/320 (11%)
Query: 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVT-FRSLKNKGID 77
+A C V AD W + ILE G + T ++ D
Sbjct: 18 NANASECGTVTIADMNWNSATLIANVDRFILEHGYGCDAELIPGDTMPTGTSMIEKGQPD 77
Query: 78 IFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVNDVGFA--LGIKSYQDIAKY 134
+ W SL+ + +EE ++ + L G + + +K+ + + K+
Sbjct: 78 VAPELWSNSLKDALDKGVEEKRLRYAGKALVDGGEEGFWIPAYLVKQYPEMKTIEGVKKH 137
Query: 135 KKELGA-------KIYGIEPGNEGNQRILDMINNNKFSLKGFRLI-EASELASFSQIRRD 186
K Y G ++ + GF +I S I +
Sbjct: 138 AKLFSHPEDKAKSAFYSCPAGWNCQISAGNLFKAMDLADSGFDIIDPGSSAGLSGSIAKA 197
Query: 187 QRNNIPAVFLSWEPHPINSDLNIHYLPGG-------------------EEISGFGEASVY 227
W P + ++ + G + + + + V+
Sbjct: 198 YEREQAWFGYYWAPTAVLGKYDMVKVDFGSGVNEEEFVSCTTQADCEAPKATMYPPSPVH 257
Query: 228 TVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
T+ ++ + P F+ A N+++ + +N+ D + L +P + W
Sbjct: 258 TITTEEFASRSPAAYDYFTKRGFTNADMNQLLAWMEDNQADGEETMFHFLENYPQIWTAW 317
Query: 288 LIGVTTFDGQDPSRQLERFM 307
+ QD +++++ +
Sbjct: 318 VP-------QDVAKKVQGAL 330
>gi|242278293|ref|YP_002990422.1| glycine/betaine ABC transporter substrate-binding protein
[Desulfovibrio salexigens DSM 2638]
gi|242121187|gb|ACS78883.1| Substrate-binding region of ABC-type glycine betaine transport
system [Desulfovibrio salexigens DSM 2638]
Length = 336
Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats.
Identities = 52/335 (15%), Positives = 109/335 (32%), Gaps = 34/335 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M + + + PV FAD W I + I+E G +
Sbjct: 9 MLWVAGFVFAAIISIMPVNSAQAADKPVIFADLNWDSIQIHNRIAGFIIEHGYGTEVEYI 68
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ + ++ +D+ M W + + ++ G++ + N + A+ L V
Sbjct: 69 PAGTAIAYEAIMRDDMDVDMESWTSNSQHLYDKGIKAGTLFDLGPNFKDAREGLMVPTYM 128
Query: 121 FA-----------LGIKSYQDIAKYKKEL-------GAKIYGIEPGNEGNQRILDMINNN 162
+K+ D+AKY + IY G Q+ + N
Sbjct: 129 IKGDPKRGIKPMTPDLKTVADLAKYPEYFKDPEDPSMGLIYSGVTGWTATQKTEQKLKNY 188
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI---- 218
L S+ A + + V W P + +++ +L
Sbjct: 189 GLDDNFNFLAPGSDAALAGSMVSAYKRGKGWVGYYWGPTWVMGMIDMTFLEEAPYDPKVW 248
Query: 219 -----SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVG 273
+ + V +V +++ P I + K + ++A+ NE + + N + V
Sbjct: 249 NDTRLCLYPNSDVNIIVGKSLMERAPEIIEMFKKYETTMAMTNECLAYMKNENASLEEVA 308
Query: 274 RTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
L+T D+ W+ D + +++ +N
Sbjct: 309 EWFLKTKEDVWTKWVS-------ADRAAKIKAALN 336
>gi|167041922|gb|ABZ06661.1| putative Substrate binding domain of ABC-type glycine betaine
transport system [uncultured marine microorganism
HF4000_133I24]
Length = 354
Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats.
Identities = 45/344 (13%), Positives = 102/344 (29%), Gaps = 46/344 (13%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
KI+ + F++ +C V A W + ILE+ G + +
Sbjct: 19 KKIILSAVIALGFTVFGGIANAACGKVVIASQNWASAELMAEVDKFILEKGYGCEVELIP 78
Query: 62 LAVPVTFR-SLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAVND- 118
A TF + D+ W ++ + +EEG + + + G +
Sbjct: 79 GATMPTFTSMDEKGAPDMNPEQWANAVYIPLIKAVEEGRLVIANKAPITGLGEGWWLTPG 138
Query: 119 ----------VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
+ ++ + + G G + + KG
Sbjct: 139 SIEKHPELKGMTAVEILEHPEWFPYKEDSSKGAFVGCPAGWGCQLANAQLFRAFEMEKKG 198
Query: 169 FRLI-EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLN------------------- 208
+ L+ S I + + P + W P I
Sbjct: 199 WVLVDPGSAAGLDGSISKAAESGNPWLGYYWNPTSIVGKYGLIQLDFGVPFAGRENWDKC 258
Query: 209 ---IHYLPGGEEISGFGEASVYTVVRSDYLDKCP-NISRLLKNIKFSVALENEMMKLILN 264
+ S + E+ V T++ + + + +I + + + + + N M+ + +
Sbjct: 259 ITVAEQDCADPKPSAWTESEVNTIITTKFAKQGGKDIVKYIGDRTYPGIVMNGMLVYMAD 318
Query: 265 NKQDRQFVGRTMLRTHPDLLKNWL-IGVTTFDGQDPSRQLERFM 307
N+ L H D+ W+ GV +++++ +
Sbjct: 319 NQAGGSDAAIEFLSKHEDVWTKWVSSGV--------AKKVKAGL 354
>gi|307941786|ref|ZP_07657140.1| substrate-binding region of ABC-type glycine betaine transport
system [Roseibium sp. TrichSKD4]
gi|307774883|gb|EFO34090.1| substrate-binding region of ABC-type glycine betaine transport
system [Roseibium sp. TrichSKD4]
Length = 332
Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats.
Identities = 43/337 (12%), Positives = 99/337 (29%), Gaps = 37/337 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K++ ++ + A+ C V A+ W A + +ILE G +
Sbjct: 3 MKKLMLTAAAGAMTLMANSAMAEECGTVTMAEMNWASAGAIAHIDKIILENGYGCNVELV 62
Query: 61 LLAVPVTFR-SLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVND 118
TF + D+ W ++ + + + G + + E L +G V
Sbjct: 63 TGDTMPTFTSMNEKGQPDVAPELWINAVREPLDKAVAAGDLIIGGEILNEGGVEGFWVPT 122
Query: 119 VGFALG--------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
+K + + + + G + KGF
Sbjct: 123 SLAEKHNIKTVEDALKHPELFPGAEDDSKGAWFTCPTGWNCRITTGNQFRAFGAEEKGFV 182
Query: 171 LI-EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIH------------------- 210
L+ S I R + W P I ++
Sbjct: 183 LVDPGSAAGLDGSIARAFERGQGWLGYYWAPTSILGKYDMTLLDFGVGHDKEHWDSCTVI 242
Query: 211 YLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQ 270
+ + + + V+TVV ++ +K +K + +++ + +N+ +
Sbjct: 243 EDCADPKPNAWVASEVFTVVTDEFAEKAGVAMDYIKGRSWDNHTAGKVLAWMSDNQATNE 302
Query: 271 FVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
L D+ W+ + + ++++ +
Sbjct: 303 DGAYFFLENFEDVWTQWVT-------PEVAEKVKKAL 332
>gi|330957605|gb|EGH57865.1| glycine betaine-binding protein [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 284
Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats.
Identities = 60/291 (20%), Positives = 114/291 (39%), Gaps = 12/291 (4%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADT-GWTDIAATTAMTSVILEEILGYKTNI 59
M KIL L S A++ + GW+D ATT + S ++++ LGY +
Sbjct: 3 MRKILGAGAALVLAVSSTLAIAET-KSLTIGYVEGWSDSVATTYVASEVIKQKLGYDVKL 61
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ +A + ++++ +D+ + W P ++ + N + AK L V +
Sbjct: 62 QSVAAGIMWQAVATDKLDLMLSAWLPGTHGEYYAKYKD-QVVNYGPNFKDAKIGLIVPEY 120
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
A I+ K KI GI+ G+ + I + G++L +S
Sbjct: 121 VKAKSIEDL----KTDTSFNKKITGIDAGSGVMLKTDQAIKDYGLD--GYKLQASSGAGM 174
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+++ R ++ V W PH + + + +L + + G +V V K P
Sbjct: 175 IAELTRAEKAQKAIVVTGWVPHWMFAKWKLRFLDDPKGVYG-AAETVDNVGSLSLEKKAP 233
Query: 240 NISRLLKNIKF-SVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
++ LK ++ S E+M I + + R + HPD + W
Sbjct: 234 DVVAFLKKFQWASKDEIGEVMLAI-QDGAKPEAAARDWVAKHPDRVAEWTD 283
>gi|323530119|ref|YP_004232271.1| glycine betaine ABC transporter substrate-binding protein
[Burkholderia sp. CCGE1001]
gi|323387121|gb|ADX59211.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia sp. CCGE1001]
Length = 285
Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats.
Identities = 63/291 (21%), Positives = 123/291 (42%), Gaps = 11/291 (3%)
Query: 1 MYKILAV-CLFLTTFSISYARDADSCTPVRFADT-GWTDIAATTAMTSVILEEILGYKTN 58
+ KIL + L + S + AD+ ++ GW D AT+ + + ++E+ LGY+
Sbjct: 4 IRKILVLSTLSAALAASSVSVSADTKPTIKIGYVEGWDDSVATSNVAARVIEKRLGYQVQ 63
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ +A V ++ + +D + W P + + + N AK L V D
Sbjct: 64 LVPVAAGVMWQGVARGDLDATLSAWLPVTHGAYWN-NFKDKVVDLGANFNDAKIGLIVPD 122
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+K+ D+ K E G++I GI+ G Q+ + I ++L+ +S A
Sbjct: 123 NL---DVKTVGDLEAKKAEFGSRIVGIDAGAGVMQKTSEAIKAYGLD---YKLMPSSGSA 176
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+++ R + N P + W+PH + + + +L +++ G E V TVV + K
Sbjct: 177 MTAELARSEAANKPIIVTGWKPHWMFAKYKLKFLDDPKKVFGEAE-HVDTVVNPELEKKA 235
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
P + LK ++ + +M N + + H D + +W+
Sbjct: 236 PPVVAFLKKFQWKPGEIDSVMLA-TQNGEKPTAAADAWIGAHSDRVDSWVK 285
>gi|134298348|ref|YP_001111844.1| glycine betaine ABC transporter substrate-binding protein
[Desulfotomaculum reducens MI-1]
gi|134051048|gb|ABO49019.1| Substrate-binding region of ABC-type glycine betaine transport
system [Desulfotomaculum reducens MI-1]
Length = 284
Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats.
Identities = 52/278 (18%), Positives = 105/278 (37%), Gaps = 13/278 (4%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSL 71
+ + + D+ + W + A + M ++LEE GYK + + + +
Sbjct: 20 AGGCGTSSAEKDAKGTITIGLNNWPENIAVSNMWKILLEEK-GYKVELSAMEKSPVWAGI 78
Query: 72 KNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDI 131
+DI W P ++ + ++ ++L +G L V I
Sbjct: 79 AKGDLDIAPEVWLPQTDEPLYNEYKD-QLELHEAWYEGTALGLVVPAYM------DINSI 131
Query: 132 AKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI 191
K I GI+PG + +I + + LIE+SE A S++ + +
Sbjct: 132 EDLDKLGINTIVGIDPGASMMKLTKKLIKEYGLN---YELIESSEPAMMSELTKAYKEKK 188
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFS 251
P V W PH S+ ++ YL ++I G E ++Y + R ++ P + + +
Sbjct: 189 PVVVTLWSPHWAFSEFDLKYLKDPKKIFGDQE-NIYFMTRKEFGKDYPEVLKWMNKWHMD 247
Query: 252 VALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
++M I N + + ++ + +L W
Sbjct: 248 DQSLGQLMATI-NKTNSPEEGAKQWIKENRNLTNQWFE 284
>gi|153832268|ref|ZP_01984935.1| ABC proline/glycine betaine transporter, periplasmic
substrate-binding protein [Vibrio harveyi HY01]
gi|148871579|gb|EDL70434.1| ABC proline/glycine betaine transporter, periplasmic
substrate-binding protein [Vibrio harveyi HY01]
Length = 330
Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats.
Identities = 44/320 (13%), Positives = 97/320 (30%), Gaps = 38/320 (11%)
Query: 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVT-FRSLKNKGID 77
+A C V AD W + ILE G + T ++ D
Sbjct: 18 NANASECGTVTIADMNWNSATLIANVDRFILEHGYGCDAELIPGDTMPTGTSMIEKGQPD 77
Query: 78 IFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVNDVGFA--LGIKSYQDIAKY 134
+ W SL+ + +EE ++ + L G + + +K+ + + K+
Sbjct: 78 VAPELWSNSLKDALDKGVEEKRLRYAGKALVDGGEEGFWIPAYLVKQYPEMKTIEGVKKH 137
Query: 135 KKELGA-------KIYGIEPGNEGNQRILDMINNNKFSLKGFRLI-EASELASFSQIRRD 186
K Y G ++ + GF +I S I +
Sbjct: 138 AKLFSHPEDKAKSAFYSCPAGWNCQISAGNLFKAMNLADSGFDIIDPGSSAGLSGSIAKA 197
Query: 187 QRNNIPAVFLSWEPHPINSDLNIHY-------------------LPGGEEISGFGEASVY 227
W P + ++ + + + + V+
Sbjct: 198 YEREEAWFGYYWAPTAVLGKYDMVKVDFGSGVDEKEFVSCTTQTDCENPKATMYPPSPVH 257
Query: 228 TVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
T+ ++ + P F+ A N+++ + +N+ D + L +P + W
Sbjct: 258 TITTEEFASRSPAAYDYFTKRGFTNADMNQLLAWMEDNQADGEETMFHFLENYPQIWNAW 317
Query: 288 LIGVTTFDGQDPSRQLERFM 307
+ QD +++++ +
Sbjct: 318 VP-------QDVAKKVQGAL 330
>gi|253582358|ref|ZP_04859581.1| ABC transporter substrate-binding protein [Fusobacterium varium
ATCC 27725]
gi|251835897|gb|EES64435.1| ABC transporter substrate-binding protein [Fusobacterium varium
ATCC 27725]
Length = 319
Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats.
Identities = 60/327 (18%), Positives = 108/327 (33%), Gaps = 27/327 (8%)
Query: 1 MYKILAVCLFLTTFSISY-ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M K + + ++++ + VRFAD GW A+ I+E GY +
Sbjct: 1 MKKKIFTFIITGFLTLAFIGCGGNDKKEVRFADAGWDSNKVHNAVAGFIIENAFGYTWSE 60
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ P+ ++K+ IDI M W ++ + + + N K + V
Sbjct: 61 VPGSTPILHEAIKSGEIDIHMEEWTDNIPSYYPDLKAGL-FQELGTNFDDNKQGIYVPRY 119
Query: 120 GFA---LGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNNKFSLKGF 169
+KS +D+ KYKK +IYG PG E + +
Sbjct: 120 VIENMAPDLKSVKDLPKYKKLFKDSENPEKGRIYGAIPGWEIDNIMYKKYEAYGLDKDFV 179
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF-------- 221
S+ A + P V WEP + + L S
Sbjct: 180 YFRPGSDAALSAAFTAAYEKKEPIVGYYWEPTWLLGKYDFILLEDEPYDSEKYFEGKTAC 239
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHP 281
V + + +K P I+ L S L +E + + + + L+ +
Sbjct: 240 PSVKVTIAASNKFKEKAPEIADFLSKYHTSSKLTSEALAHMQETGDNYNATAKWFLKNND 299
Query: 282 DLLKNWLIGVTTFDGQDPSRQLERFMN 308
+L+ WL D + + + +N
Sbjct: 300 NLIDQWLT-------ADKAAAVRKALN 319
>gi|333029179|ref|ZP_08457240.1| Substrate-binding region of ABC-type glycine betaine transport
system [Bacteroides coprosuis DSM 18011]
gi|332739776|gb|EGJ70258.1| Substrate-binding region of ABC-type glycine betaine transport
system [Bacteroides coprosuis DSM 18011]
Length = 285
Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats.
Identities = 53/291 (18%), Positives = 115/291 (39%), Gaps = 15/291 (5%)
Query: 1 MYKI-LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M + + +T + + + FA W + A T + ++ EE GYK +
Sbjct: 1 MKYLKSIALMLVTALLFASCGNQSDKKTITFAYVNWAEGIAMTNLAKILFEEQ-GYKVKM 59
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
K + F +L K D+F+ W P + I+ + A L V
Sbjct: 60 KNADIAPIFAALAKKDADVFLDSWLPITHADYFKQYGDA-IEEIDTLFNDATIGLVVPSY 118
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
I S +++ K + +I GI+ G + I + F+L+ ++
Sbjct: 119 V---TINSIEELNSVKDQFEGEIVGIDAGAGVMKVTEQAIKDYNLD---FKLLSSTGPMM 172
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+ +++ N V W+PH S ++ L + + G E + ++ R + ++ P
Sbjct: 173 TAALKKAIDENKWVVVTGWKPHWKFSRFDLKILEDPKNVYGEAE-VIKSICRKGFKEEDP 231
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFV--GRTMLRTHPDLLKNWL 288
+ L+ N+KF+ + +M + + V ++ ++ + +L+ +W+
Sbjct: 232 FATELIGNMKFTNEQISSLMDALEDA---PTEVMGVKSWMKDNQELVDSWI 279
>gi|317121397|ref|YP_004101400.1| substrate-binding region of ABC-type glycine betaine transporter
[Thermaerobacter marianensis DSM 12885]
gi|315591377|gb|ADU50673.1| Substrate-binding region of ABC-type glycine betaine transport
system [Thermaerobacter marianensis DSM 12885]
Length = 375
Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats.
Identities = 43/291 (14%), Positives = 87/291 (29%), Gaps = 28/291 (9%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWY 84
+ F D W + + I+E GY + K + L++ + I M W
Sbjct: 70 KPTLVFGDFSWDSVQVHNRIAGFIIEHGYGYPVDYKFGDTIPILQGLQDGSVHITMEMWP 129
Query: 85 PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG-----------FALGIKSYQDIAK 133
++ + L+ G + + N A V A ++S QD+ +
Sbjct: 130 DNIREAWQKALDAGQVLDLGPNYPEAPQGWYVPAYVVKGDPRRGIEPMAPDLRSVQDLER 189
Query: 134 YKKELGA-------KIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRD 186
Y + + Y G + + + SE + I
Sbjct: 190 YWQLFEDPSEPGKGRFYNCPTGWVCSDINAQKLAAYGLDDRFTAFNPGSEAGLNTSITTA 249
Query: 187 QRNNIPAVFLSWEPHPINSDLNIHYLPGG---------EEISGFGEASVYTVVRSDYLDK 237
+ P V WEP + + L ++ + + V ++
Sbjct: 250 YQQGKPWVGYYWEPTWVTGKYELIRLEEPAYTDACWESDKACAYPPSQVLVAANAELEAM 309
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
P + LK ++ + + + K + LRT+ D + W+
Sbjct: 310 APEVVDFLKKYDTTLEQTAAALAYMEDEKAEPADAAVWFLRTYRD-WEQWV 359
>gi|146305521|ref|YP_001185986.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas mendocina ymp]
gi|145573722|gb|ABP83254.1| Substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas mendocina ymp]
Length = 283
Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats.
Identities = 62/291 (21%), Positives = 115/291 (39%), Gaps = 10/291 (3%)
Query: 1 MYKILAVCLFLTTFSISYARD-ADSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTN 58
M +CL +I A ++ W D A T + IL+ LGY
Sbjct: 1 MRVFKHLCLGAAALAIGMGSALAADKPTLKIGYVNGWDDSVAVTHVAGEILQSKLGYAVE 60
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+K + + ++ + +D + W P+ L++ ++++ N GAK L V D
Sbjct: 61 LKPVEPAIMWQGVARGDLDATLSAWLPATHGEYYEKLKD-KVEVLGTNYSGAKIGLIVPD 119
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
A I+ + KY K+ KI GI+ G +R D I +L+ +S A
Sbjct: 120 YVEAKTIED---LEKYAKDFDGKITGIDAGAGVMRRTEDAIKEYNL--ASIKLMPSSGPA 174
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+ + R ++ P V W PH + + + +L +++ G + V TV + K
Sbjct: 175 MATALTRAEKAQKPIVVTGWIPHWMFAKWKLRFLEDPKKVYGD-DERVDTVANPELKGKA 233
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+ + L + +S +M I + + + +PD + +WL
Sbjct: 234 ADAAAFLAKLSWSGEEVGAVMLAI-REGAKPEQAAKDWIAANPDRVDSWLK 283
>gi|167041561|gb|ABZ06309.1| putative Substrate binding domain of ABC-type glycine betaine
transport system [uncultured marine microorganism
HF4000_008G09]
Length = 340
Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats.
Identities = 43/344 (12%), Positives = 98/344 (28%), Gaps = 46/344 (13%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
KI+ + + +C V A W + ILE+ G + +
Sbjct: 5 KKIILSAVIALGSAAFGGIANAACGKVVIASQNWASAELMAEVDKFILEKGYGCEVELIP 64
Query: 62 LAVPVTF-RSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAVND- 118
A TF + D+ W ++ + +EEG + + + G +
Sbjct: 65 GATMPTFASMDEKGAPDMNPEQWANAVFIPLTKAVEEGRLVIANKAPITGLGEGWWLTPG 124
Query: 119 ----------VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
+ ++ + + G G + + KG
Sbjct: 125 SIEKHPELKGMTAVEILEHPEWFPYKEDPSKGAFVGCPAGWGCQLANAQLFRAFEMEKKG 184
Query: 169 FRLI-EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLN------------------- 208
+ L+ S I + + P + W P I
Sbjct: 185 WVLVDPGSAAGLDGSISKAAESGNPWLGYYWNPTSIVGKYGLIQLDFGVPFAGRENWDKC 244
Query: 209 ---IHYLPGGEEISGFGEASVYTVVRSDYLDKCP-NISRLLKNIKFSVALENEMMKLILN 264
+ S + E+ V T++ + + + + + + + + N M+ + +
Sbjct: 245 ITVAEQDCADPKPSAWTESEVNTIITTKFAKQGGKKVVKYIGKRTYPGIVMNGMLVYMAD 304
Query: 265 NKQDRQFVGRTMLRTHPDLLKNWL-IGVTTFDGQDPSRQLERFM 307
N+ L H D+ W+ GV +++++ +
Sbjct: 305 NQAGGSDAAIEFLSKHEDVWTKWVSSGV--------AKKVKAGL 340
>gi|171316279|ref|ZP_02905501.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia ambifaria MEX-5]
gi|171098601|gb|EDT43400.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia ambifaria MEX-5]
Length = 292
Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats.
Identities = 63/289 (21%), Positives = 105/289 (36%), Gaps = 7/289 (2%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+LA T + S + PV+ A T W D+ A + +LE L
Sbjct: 7 KSLLAKLAVSTVVACSAGVGVAAAEPVKIAVTNWADVLAVANVAKYVLETSLKQPVQFVQ 66
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ + ++ + +DI +G W P + + V G + AV
Sbjct: 67 ADIGIQYQGVARGDLDIMVGGWLPVTHATYYAKY-KSDLDDVGIIYTGGRNGWAVPTYIP 125
Query: 122 ALGIKSYQDIAKY--KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+ S D++K K +L I GIEPG Q I G+ L +SE
Sbjct: 126 ESQLSSIADLSKPEVKSKLNGTIQGIEPGGGLMQASEKTIKAYNLD--GYNLQASSEAGM 183
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+ + R ++ V W PH + + YL + G GE ++ + K P
Sbjct: 184 LASVSRAYQSKQWIVATVWSPHWLFQKWQMRYLKDPKGTLG-GEEQIHAFASKKFAGKFP 242
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
K++K ++A + N+ D + + HP+ LK WL
Sbjct: 243 RADVFFKHLKLTLADVEAIEFE-GNSTNDYATAAKKFVDAHPEKLKAWL 290
>gi|170720477|ref|YP_001748165.1| glycine betaine ABC transporter substrate-binding protein
[Pseudomonas putida W619]
gi|169758480|gb|ACA71796.1| Substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas putida W619]
Length = 286
Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats.
Identities = 55/289 (19%), Positives = 108/289 (37%), Gaps = 14/289 (4%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNI 59
M ++L L + A V W D ATT + + ++++ LGY +
Sbjct: 7 MRRLLGAGTALVLAMSAAQAMA---KEVSIGYVDGWADSVATTNVAAEVIKQKLGYDVKL 63
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ +A + ++ + +D + W P + ++ N + AK L V +
Sbjct: 64 QAVATGIMWQGVATGKLDAMLSAWLPVTHGEYWTK-NKDNVVDYGANFKDAKIGLIVPEY 122
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
A I K + KI GI+ G+ + I + + G++L +S A
Sbjct: 123 VKANSITDL----KTDESFKQKIVGIDAGSGVMLKTDQAIKDYEL--TGYKLQASSGAAM 176
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+++ R W PH + + + +L + + G +V ++ + K P
Sbjct: 177 TAELGRAYAKQQSIAVTGWVPHWMFAKWKLKFLEDPKGVYG-AAETVNSIGSKELATKAP 235
Query: 240 NISRLLKNIKF-SVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
++ LK + S E+M I + + + HPD +K W
Sbjct: 236 EVAEFLKKFSWQSKDEIGEVMLAI-QEGAKPEAAAKDWVAKHPDRVKEW 283
>gi|289522756|ref|ZP_06439610.1| histidine transporter, periplasmic histidine-binding protein
[Anaerobaculum hydrogeniformans ATCC BAA-1850]
gi|289504592|gb|EFD25756.1| histidine transporter, periplasmic histidine-binding protein
[Anaerobaculum hydrogeniformans ATCC BAA-1850]
Length = 340
Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats.
Identities = 59/321 (18%), Positives = 99/321 (30%), Gaps = 33/321 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSC------TPVRFADTGWTDIAATTAMTSVILEEILGY 55
K L + L L A A+ C + FAD W + + ++ G
Sbjct: 5 KKTLYLILGLVFVFTVAAGGAEKCFAQNDNGKITFADFSWESVQVHNRIAGYLIRHGWGR 64
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
+ L+ F L+ I I M W + + + G I + +N A
Sbjct: 65 EVEYMLVEEVPGFMGLERGDIQIAMEAWVDNAASYWEEAKKRGMIISLGKNYPDAPQGWY 124
Query: 116 VNDVGFA-----------LGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILD 157
V +KS D+ KY + + G +
Sbjct: 125 VPTYIIEGDEERGIKPMASDLKSVSDLPKYWELFKDPELKTKGRFNNGPSGWIISVINEK 184
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE- 216
+ S A S I P + WEP P+ ++ L
Sbjct: 185 RLKAYGLDKTYRNFYTGSAAALASAIAGAYERGNPVLAYYWEPTPLLGMYDMTRLEEPPY 244
Query: 217 --------EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQD 268
+ V V D+L++ P I +LK + S+ L NE++ + N
Sbjct: 245 DEKVWNDTGACEMPKCRVLKVANRDFLEENPEIEEMLKRYRTSLELTNEVLAYMKKNSVT 304
Query: 269 RQFVGRTMLRTHPDLLKNWLI 289
+ L+THP L ++W+
Sbjct: 305 PKDAAEWFLKTHPKLWRSWIA 325
>gi|20090990|ref|NP_617065.1| glycine betaine/L-proline ABC transporter, solute-binding protein
[Methanosarcina acetivorans C2A]
gi|19916077|gb|AAM05545.1| glycine betaine/L-proline ABC transporter, solute-binding protein
[Methanosarcina acetivorans C2A]
Length = 315
Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats.
Identities = 55/301 (18%), Positives = 106/301 (35%), Gaps = 27/301 (8%)
Query: 5 LAVCLFLTTFSISYARDADS----------------CTPVRFADTGWTDIAATTAMTSVI 48
+ + + L+ F+ A D PV W A+T + +
Sbjct: 19 IVLIIGLSLFAAGCAEQGDETVEGAETAPAEEASELSEPVTIGYVLWDGEIASTNVIQQV 78
Query: 49 LEEILGYK-TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL 107
LE+ GY+ I + ++ L + D W P + + + V NL
Sbjct: 79 LEQA-GYEDVEIVAVDAGPLYQGLADGQFDFTTSAWLPYTHQSYWEAYGD-QLDSVQTNL 136
Query: 108 QGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
+ K L V I S +++ K + +I GI+PG Q I +
Sbjct: 137 EDCKIGLVVPSYV---TIDSIEELNSEKDKFNGQIIGIDPGAGIMQASETAITDYDLD-- 191
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
L+ S A + +++ + V W PH + ++ YL + G + V
Sbjct: 192 -MELVSGSSAAMTTSLKKSIDSEEWTVVTLWSPHWAFNRWDLKYLDDPKGAYGDAD-HVE 249
Query: 228 TVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
T+ R ++ PN+ +L +++ +M I N + + +P+ + W
Sbjct: 250 TLARLGLEEEKPNLYGILTRFQWTHDDIQTVMMDI-ENGTAPEEAAANWVANNPEKVNEW 308
Query: 288 L 288
+
Sbjct: 309 I 309
>gi|320325404|gb|EFW81469.1| histidine transporter, periplasmic histidine-binding protein
[Pseudomonas syringae pv. glycinea str. B076]
gi|320327455|gb|EFW83468.1| histidine transporter, periplasmic histidine-binding protein
[Pseudomonas syringae pv. glycinea str. race 4]
gi|330877288|gb|EGH11437.1| histidine transporter, periplasmic histidine-binding protein
[Pseudomonas syringae pv. glycinea str. race 4]
Length = 337
Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats.
Identities = 51/342 (14%), Positives = 108/342 (31%), Gaps = 43/342 (12%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+ ++L L A A+ P++F W + T + ++E+ GY+T+
Sbjct: 4 ITRLLGCSLLALGLLGQTAGAAEKNAPIQFGALTWESGSLITEVLRTLVEKGYGYRTDTL 63
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ +L I + W +G + + ++GA V +
Sbjct: 64 PGSTVSLETALAKNDIQVIAEEW-TGRSPVWVKAEADGKVLGLGNIVKGATEGWWVPEYV 122
Query: 121 FA-----------LGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNN 162
+KS D+A+YK + G +
Sbjct: 123 IKGDAAKGIKPVAPDLKSVADLARYKDVFKDPESPDKGRFLNSPSGWTSEIVNTQKLKAY 182
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG-EEISGF 221
+ S A +++ R P +F W P P+ + L + +
Sbjct: 183 GLTDSFVNFRTGSGAALDAEVASAIRRGKPVLFYYWSPTPLLGKYKLIKLEEPAFDAEAW 242
Query: 222 G----------------EASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNN 265
A++ V +++ + P + + KN+ F + L N + + +
Sbjct: 243 KTLTDASNPNPRGTSSLAATLSIGVSAEFSKQYPELVSVFKNVDFPIDLLNRTLGEMSDK 302
Query: 266 KQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+D L+ HP++ K WL D + ++ +
Sbjct: 303 HEDPSVAAARFLKQHPEVWKAWLP-------ADVAAKVSHSL 337
>gi|70727656|ref|YP_254572.1| glycine-betaine binding permease [Staphylococcus haemolyticus
JCSC1435]
gi|68448382|dbj|BAE05966.1| glycine-betaine binding permease protein [Staphylococcus
haemolyticus JCSC1435]
Length = 373
Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats.
Identities = 62/284 (21%), Positives = 112/284 (39%), Gaps = 11/284 (3%)
Query: 7 VCLFLTTFSISYARDADS-CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP 65
V + + ++ D ++ ++ A D +T + + +LEE GYK + L +P
Sbjct: 99 VAILGSILGHMFSDDKEANKGTIKLAYAQQDDQIVSTNVIAQVLEEQ-GYKVDTTSLDIP 157
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
VT+ ++ +D G W P ++ L + AK L V
Sbjct: 158 VTWEAVSKGEVDAMTGAWLPITHGAEYKKVKNDIDNLGPHIDKEAKLGLVVPKYM----- 212
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
I + KI GIEPG E + + +LKG+ I +S A ++++R
Sbjct: 213 -DVNSIEDLNNQANKKITGIEPGAEIVDATNETLKAYP-NLKGWEQINSSTGAMNAELKR 270
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
+N + W + I ++ YL + G E+ + T+ R + P R+L
Sbjct: 271 AIKNKDDIIITGWNRYWIFQRYDLKYLDDPKGSMGKAES-INTIARKGLKEDEPEAYRIL 329
Query: 246 KNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
N K+SV +M I N +D + + + + D + W
Sbjct: 330 DNFKWSVKDMESIMLEI-ENGKDPEKATKEWIDNNRDKVDKWTE 372
>gi|294495144|ref|YP_003541637.1| substrate-binding region of ABC-type glycine betaine transporter
[Methanohalophilus mahii DSM 5219]
gi|292666143|gb|ADE35992.1| Substrate-binding region of ABC-type glycine betaine transport
system [Methanohalophilus mahii DSM 5219]
Length = 945
Score = 173 bits (437), Expect = 4e-41, Method: Composition-based stats.
Identities = 53/264 (20%), Positives = 94/264 (35%), Gaps = 9/264 (3%)
Query: 26 TPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYP 85
W A+T + +LE+ GY+ I + ++ L + D W P
Sbjct: 595 RTTSIGYVMWDGEIASTNVMKEVLEQA-GYEVEIIAVDAGPLYQGLADGQFDFTTSAWLP 653
Query: 86 SLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGI 145
+ + + VA NL+ K LAV I S +D+ K++ KI GI
Sbjct: 654 QTQANYWEQYGD-QVDRVAVNLEDCKLGLAVPTYMED--INSIEDLNANKEKFNGKITGI 710
Query: 146 EPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINS 205
+PG Q D I+ + L +S S + R+ P V W PH
Sbjct: 711 DPGAGIMQNTEDAIDMYNLD---YDLEASSSAGMASALDGAYRDEQPIVVTLWTPHWAFD 767
Query: 206 DLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNN 265
++ L ++ G + V T+ R D P + ++ ++ +M +
Sbjct: 768 RYDLKMLDDPQQAYGEAD-HVETLARQGLEDDKPELYAIINRFNWTHNEIQTVMADMEA- 825
Query: 266 KQDRQFVGRTMLRTHPDLLKNWLI 289
+ + +PD + W+
Sbjct: 826 GMSAEDAAANWVENNPDRVNEWIN 849
>gi|156977774|ref|YP_001448680.1| hypothetical protein VIBHAR_06562 [Vibrio harveyi ATCC BAA-1116]
gi|156529368|gb|ABU74453.1| hypothetical protein VIBHAR_06562 [Vibrio harveyi ATCC BAA-1116]
Length = 330
Score = 173 bits (437), Expect = 4e-41, Method: Composition-based stats.
Identities = 44/320 (13%), Positives = 97/320 (30%), Gaps = 38/320 (11%)
Query: 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVT-FRSLKNKGID 77
+A C V AD W + ILE G + T ++ D
Sbjct: 18 NANASECGTVTIADMNWNSATLIANVDRFILEHGYGCDAELIPGDTMPTGTSMIEKGQPD 77
Query: 78 IFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVNDVGFA--LGIKSYQDIAKY 134
+ W SL+ + +EE ++ + L G + + +K+ + + K+
Sbjct: 78 VAPELWSNSLKDALDKGVEEKRLRYAGKALVDGGEEGFWIPAYLVKQYPEMKTIEGVKKH 137
Query: 135 KKELGA-------KIYGIEPGNEGNQRILDMINNNKFSLKGFRLI-EASELASFSQIRRD 186
K Y G ++ + GF +I S I +
Sbjct: 138 AKLFSHPEDKAKSAFYSCPAGWNCQISAGNLFKAMNLADAGFDIIDPGSSAGLSGSIAKA 197
Query: 187 QRNNIPAVFLSWEPHPINSDLNIHY-------------------LPGGEEISGFGEASVY 227
W P + ++ + + + + V+
Sbjct: 198 YEREEAWFGYYWAPTAVLGKYDMVKVDFGSGVDEKEFVSCTTQTDCENPKATMYPPSPVH 257
Query: 228 TVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
T+ ++ + P F+ A N+++ + +N+ D + L +P + W
Sbjct: 258 TITTEEFASRSPAAYDYFTKRGFTNADMNQLLAWMEDNQADGEETMFHFLENYPQIWNAW 317
Query: 288 LIGVTTFDGQDPSRQLERFM 307
+ QD +++++ +
Sbjct: 318 VP-------QDVAKKVQGAL 330
>gi|311107977|ref|YP_003980830.1| glycine betaine ABC transporter substrate-binding family protein
[Achromobacter xylosoxidans A8]
gi|310762666|gb|ADP18115.1| substrate binding domain of ABC-type glycine betaine transport
system family protein 2 [Achromobacter xylosoxidans A8]
Length = 333
Score = 173 bits (437), Expect = 4e-41, Method: Composition-based stats.
Identities = 48/309 (15%), Positives = 101/309 (32%), Gaps = 34/309 (11%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWY 84
PV F W + I+E+ G KT +L+ +DI W
Sbjct: 33 KRPVNFGAMNWESNLVLVDVERFIMEKGYGCKTETLPTETLPALAALERGDLDINTEIWL 92
Query: 85 PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA--LGIKSYQDIAKYKKELGA-- 140
S+ + G +K + + GA + +KS D+ K+K +
Sbjct: 93 NSVADPWDRAEKTGKVKRIGDLYMGA-EGWYIPRYTAERLPELKSAADLPKFKDKFKDPE 151
Query: 141 -----KIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
+ YG G ++ + K + A + + + VF
Sbjct: 152 EPGKGRFYGCPAGWGCEITSNNLFHALKLDDSYTLYSPGTGAAQKAALMSAYKRKQNVVF 211
Query: 196 LSWEPHPINSDLNIHYLPGGEEI-----------------SGFGEASVYTVVRSDYLDKC 238
W P P+ +++ L S + + V+T V + + ++
Sbjct: 212 YYWSPTPLVGAMDLVKLDMPPYDAEKHKCLTSPKCANPEPSAYPDNPVFTAVNTKFSEEA 271
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
P ++ L + + + NE + + + + V + L+ PD+ W+ D
Sbjct: 272 PKLTEFLSKVSVPLPVINETLAHMEESGDEASAVAKWFLKNKPDVWTKWVP-------AD 324
Query: 299 PSRQLERFM 307
+ +++ +
Sbjct: 325 VAGRVQGAL 333
>gi|301383342|ref|ZP_07231760.1| glycine betaine-binding protein, putative [Pseudomonas syringae pv.
tomato Max13]
gi|302059386|ref|ZP_07250927.1| glycine betaine-binding protein, putative [Pseudomonas syringae pv.
tomato K40]
gi|302134515|ref|ZP_07260505.1| glycine betaine-binding protein, putative [Pseudomonas syringae pv.
tomato NCPPB 1108]
gi|331017364|gb|EGH97420.1| glycine betaine-binding protein, putative [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 284
Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats.
Identities = 59/291 (20%), Positives = 113/291 (38%), Gaps = 12/291 (4%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADT-GWTDIAATTAMTSVILEEILGYKTNI 59
M KIL L S A++ + GW+D ATT + S ++++ LGY +
Sbjct: 3 MRKILGAGAALVLAVSSTLAIAET-KTLTIGYVEGWSDSVATTFVASEVIKQKLGYDVKL 61
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ +A + ++++ +D+ + W P ++ + N + AK L V +
Sbjct: 62 QSVAAGIMWQAVATDKLDLMLSAWLPGTHGEYYTKYKD-QVVNYGPNFKDAKIGLIVPEY 120
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
A I+ K KI GI+ G+ + I + G++L +S
Sbjct: 121 VKAKSIEDL----KTDASFNKKITGIDAGSGVMLKTDQAIKDYGLD--GYKLQASSGAGM 174
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+++ R ++ V W PH + + + +L + + G +V V K P
Sbjct: 175 IAELTRAEKAQKAIVVTGWVPHWMFAKWKLRFLDDPKGVYG-AAETVDNVASLTLEKKAP 233
Query: 240 NISRLLKNIKF-SVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+ LK ++ S E+M I + + + + HPD + W
Sbjct: 234 EVVAFLKKFQWASKDEIGEVMLAI-QDGAKPEAAAKDWVAKHPDRVAAWTA 283
>gi|71279821|ref|YP_271572.1| amino acid ABC transporter periplasmic amino acid-binding protein
[Colwellia psychrerythraea 34H]
gi|71145561|gb|AAZ26034.1| amino acid ABC transporter, periplasmic amino acid-binding protein
[Colwellia psychrerythraea 34H]
Length = 323
Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats.
Identities = 47/330 (14%), Positives = 99/330 (30%), Gaps = 29/330 (8%)
Query: 1 MYK-ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M K IL + + + I A C + ++ W T+++ ILE+ G
Sbjct: 1 MKKSILPIAALIFSTYIMPATAQSDCGDITISEMNWASGQLVTSVSKFILEQGYGCNVQT 60
Query: 60 KLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ P + DI W ++ + + I G +
Sbjct: 61 IPTSTVPSVVSLAETGKPDIITELWITAVPLYKELEKQGKVITATKVLSDGGTNGWWIPK 120
Query: 119 VGFA--LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKF-SLKGFRLIEAS 175
+K+ + + + +G + + G ++I F K S
Sbjct: 121 YLADKHPELKTIEGVLANPELVGGRFHNAPNGWGMRTTNDNLIKAFNFAGNKMDVFNHGS 180
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG-----------------EEI 218
+ I + P W P + + + G +
Sbjct: 181 GETLAASIASAYDAHEPWFGYYWAPTSVLGKYEMVAVDMGAFDETAYACAESKECSNPQK 240
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLR 278
+ A+V T + +D + P + L+K + F+ ++++ NK + +
Sbjct: 241 TSLPSATVVTAITTDLATREPEVLNLMKKLSFTNKQMSQLLAWQEANKSSSEEAAVHFIT 300
Query: 279 THPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
T D+ WL +D + L +
Sbjct: 301 TQQDIWSAWLS-------EDARKNLASLLK 323
>gi|104780636|ref|YP_607134.1| glycine betaine-binding protein, ABC type [Pseudomonas entomophila
L48]
gi|95109623|emb|CAK14324.1| putative glycine betaine-binding protein, ABC type [Pseudomonas
entomophila L48]
Length = 282
Score = 172 bits (436), Expect = 5e-41, Method: Composition-based stats.
Identities = 57/289 (19%), Positives = 110/289 (38%), Gaps = 14/289 (4%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNI 59
M + L V L + A V W+D ATT + + ++ + LGY +
Sbjct: 3 MRRFLGVGTALVLAMSTAQAMA---KEVSIGYVDGWSDSVATTNVAAEVIRQKLGYDVKL 59
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ +A + ++ + +D + W P + S+ N + AK L V +
Sbjct: 60 QAVATGIMWQGVATGKLDAMLSAWLPVTHGEYW-AKNKDSVVDYGPNFKDAKIGLIVPEY 118
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
A I+ K + KI GI+ G+ + I + G++L +S A
Sbjct: 119 VKANSIEDL----KTDQSFKQKIVGIDAGSGVMLKTEQAIKDYDL--TGYKLTASSGAAM 172
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+++ R N W PH + + + +L + + G +V ++ + K P
Sbjct: 173 TAELGRSYAKNQSIAVTGWVPHWMFAKWKLKFLEDPKGVYG-AAETVNSIGSKELAGKAP 231
Query: 240 NISRLLKNIKF-SVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
++ LK ++ S E+M I + + + HP+ +K W
Sbjct: 232 EVAEFLKKFQWQSKDEIGEVMLAI-QEGAKPEAAAKDWVAKHPERVKEW 279
>gi|167041172|gb|ABZ05931.1| putative Substrate binding domain of ABC-type glycine betaine
transport system [uncultured marine microorganism
HF4000_001B09]
Length = 354
Score = 172 bits (436), Expect = 5e-41, Method: Composition-based stats.
Identities = 45/344 (13%), Positives = 102/344 (29%), Gaps = 46/344 (13%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
KI+ + F++ +C V A W + ILE+ G + +
Sbjct: 19 KKIILSAVIALGFTVFGGIANAACGKVVVASQNWASAELMAEVDKFILEKGYGCEVELIP 78
Query: 62 LAVPVTFR-SLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAVND- 118
A TF + D+ W ++ + +EEG + + + G +
Sbjct: 79 GATMPTFTSMDEKGAPDMNPEQWANAVYIPLIKAVEEGRLVIANKAPITGLGEGWWLTPG 138
Query: 119 ----------VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
+ ++ + + G G + + KG
Sbjct: 139 SIEKHPELKGMTAVEILEHPEWFPYKEDSSKGAFVGCPAGWGCQLANAQLFRAFEMEKKG 198
Query: 169 FRLI-EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLN------------------- 208
+ L+ S I + + P + W P I
Sbjct: 199 WVLVDPGSAAGLDGSISKAAESGNPWLGYYWNPTSIVGKYGLIQLDFGVPFAGRENWDKC 258
Query: 209 ---IHYLPGGEEISGFGEASVYTVVRSDYLDKCP-NISRLLKNIKFSVALENEMMKLILN 264
+ S + E+ V T++ + + + +I + + + + + N M+ + +
Sbjct: 259 ITVAEQDCADPKPSAWTESEVNTIITTKFAKQGGKDIVKYIGDRTYPGLVMNGMLVYMAD 318
Query: 265 NKQDRQFVGRTMLRTHPDLLKNWL-IGVTTFDGQDPSRQLERFM 307
N+ L H D+ W+ GV +++++ +
Sbjct: 319 NQAGGSDAAIEFLSKHEDVWTKWVSSGV--------AKKVKAGL 354
>gi|126508518|gb|ABO15442.1| hypothetical ABC transporter BUS4 [Vibrio harveyi]
Length = 330
Score = 172 bits (436), Expect = 6e-41, Method: Composition-based stats.
Identities = 42/320 (13%), Positives = 94/320 (29%), Gaps = 38/320 (11%)
Query: 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVT-FRSLKNKGID 77
+A C V AD W + ILE G + T ++ D
Sbjct: 18 NANASECGTVTIADMNWNSATLIANVDRFILEHGYGCDAELIPGDTMPTGTSMIEKGQPD 77
Query: 78 IFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVNDVGFA--LGIKSYQDIAKY 134
+ W SL+ + +EE ++ + L G + + +K+ + + K+
Sbjct: 78 VAPELWSNSLKDALDKGVEEKRLRYAGKALVDGGEEGFWIPAYLVKQYPEMKTIEGVKKH 137
Query: 135 KKELGA-------KIYGIEPGNEGNQRILDMINNNKF-SLKGFRLIEASELASFSQIRRD 186
K Y G ++ + S I +
Sbjct: 138 AKLFSHPEDKAKSAFYSCPAGWNCQISAGNLFKAMDLAGSGFDIIDPGSSAGLSGSIAKA 197
Query: 187 QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS-------------------GFGEASVY 227
W P + ++ + G + + + V+
Sbjct: 198 YEREEAWFGYYWAPTAVLGKYDMVKVDFGSGVDEKEFVSCTTQADCENPKPTMYPPSPVH 257
Query: 228 TVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
T+ ++ + P F+ A N+++ + +N+ D + L +P + W
Sbjct: 258 TITTEEFASRSPAAYNYFTKRGFTNADMNQLLAWMEDNQADGEETMFHFLENYPQIWTAW 317
Query: 288 LIGVTTFDGQDPSRQLERFM 307
+ QD +++++ +
Sbjct: 318 VP-------QDVAKKVQGAL 330
>gi|71734281|ref|YP_273730.1| histidine transporter, periplasmic histidine-binding protein
[Pseudomonas syringae pv. phaseolicola 1448A]
gi|71554834|gb|AAZ34045.1| histidine transporter, periplasmic histidine-binding protein
[Pseudomonas syringae pv. phaseolicola 1448A]
Length = 337
Score = 172 bits (436), Expect = 6e-41, Method: Composition-based stats.
Identities = 52/345 (15%), Positives = 108/345 (31%), Gaps = 46/345 (13%)
Query: 1 MY---KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M ++L L A A+ P++F W + T + ++E+ GY+T
Sbjct: 1 MKSITRLLGCSLLALGLLRQTAGAAEKNAPIQFGALTWESGSLITEVLRTLVEKGYGYRT 60
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+ + +L I + W +G + + ++GA V
Sbjct: 61 DTLPGSTVSLETALAKNDIQVIAEEW-TGRSPVWVKAEADGKVLGLGNIVKGATEGWWVP 119
Query: 118 DVGFA-----------LGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMI 159
+ +KS D+A+YK + G +
Sbjct: 120 EYVIKGDAAKGIKPVAPDLKSVADLARYKDVFKDPESPDKGRFLNSPSGWTSEIVNTQKL 179
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG-EEI 218
+ S A +++ R P +F W P P+ + L +
Sbjct: 180 KAYGLTDSFVNFRTGSGAALDAEVASAIRRGKPVLFYYWSPTPLLGKYKLIKLEEPAFDA 239
Query: 219 SGFG----------------EASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI 262
+ A++ V +++ + P + + KN+ F + L N + +
Sbjct: 240 EAWKTLTDASNPNPRGTSSLAATLSIGVSAEFSKQYPELVSVFKNVDFPIDLLNRTLGEM 299
Query: 263 LNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ +D L+ HP++ K WL D + ++ +
Sbjct: 300 SDKHEDPSVAAARFLKQHPEVWKAWLP-------ADVAAKVSHSL 337
>gi|296533153|ref|ZP_06895782.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Roseomonas cervicalis ATCC
49957]
gi|296266525|gb|EFH12521.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Roseomonas cervicalis ATCC
49957]
Length = 345
Score = 172 bits (435), Expect = 6e-41, Method: Composition-based stats.
Identities = 60/276 (21%), Positives = 104/276 (37%), Gaps = 9/276 (3%)
Query: 14 FSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKN 73
+S R A + V+F W D T + + + E+ LG K + V ++ L
Sbjct: 74 LGLSAPRLARAAGTVKFGFAPWADAEFITRLAARLTEQRLGTKVELVQTDVAPLYQGLTR 133
Query: 74 KGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAK 133
+D + W P + EG ++ + GA+ V + S D+AK
Sbjct: 134 GDVDAMLMCWLPQTHADYWSRV-EGRVERLGVLYSGARLGWVVPAYVPEAELGSIADLAK 192
Query: 134 --YKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI 191
+ +LG +I GIEPG + I + L E+SE A S + R R
Sbjct: 193 ADVRGKLGGRIQGIEPGAGLTRLSRKTIEEYGLD---YTLQESSEAAMLSMVERAMRREN 249
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFS 251
V +W PH + ++ YL + G G+ V + R ++ P ++R L +
Sbjct: 250 WVVATAWSPHWMFGKHDLRYLADPKGTLG-GQEEVLALGRPGLGEQQPELARFLSRLNLP 308
Query: 252 VALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
+A M + + + H ++ W
Sbjct: 309 LAELESAMLVAQE--KTPGEAVEAYISEHGSRIEGW 342
>gi|317405787|gb|EFV86077.1| periplasmic substrate-binding protein [Achromobacter xylosoxidans
C54]
Length = 333
Score = 172 bits (435), Expect = 6e-41, Method: Composition-based stats.
Identities = 50/322 (15%), Positives = 103/322 (31%), Gaps = 37/322 (11%)
Query: 15 SISYARDADSCT---PVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSL 71
+ A DA C P+ F W + I+E+ G KT +L
Sbjct: 20 GSAQAADAPQCELKRPINFGAMNWESNLVLVDVERFIMEKGYGCKTETLPTETLPALAAL 79
Query: 72 KNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA--LGIKSYQ 129
+ +DI W S+ + G +K + + G + +KS
Sbjct: 80 ERGDLDINTEIWLNSVADPWERAEKTGRVKRIGDLYMGG-EAWYIPRYTAERLPELKSAA 138
Query: 130 DIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
D+ K+K + + YG G ++ + K + A +
Sbjct: 139 DLPKFKDKFKDPEEPGKGRFYGCPAGWGCEVTSTNLFHALKLDDTYTLYSPGTGAAQKAA 198
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI-----------------SGFGEAS 225
+ + VF W P P+ +++ L S + +
Sbjct: 199 LMSAYKRKQNVVFYYWSPTPLVGAMDLVKLEMPPYDAEKHKCLTSPKCAKPEPSAYPDNP 258
Query: 226 VYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLK 285
V+T V + + + P ++ L + + + NE + + + V + L+ PD+
Sbjct: 259 VFTAVNTKFSQEAPVLTEFLSKVSVPLPVMNETLAHMEETGDESGAVAKWFLKNKPDVWT 318
Query: 286 NWLIGVTTFDGQDPSRQLERFM 307
W+ D + +++ +
Sbjct: 319 KWVP-------ADVAGRVQSAL 333
>gi|83951334|ref|ZP_00960066.1| glycine betaine/proline ABC transporter, periplasmic
glycinebetaine/proline-binding protein [Roseovarius
nubinhibens ISM]
gi|83836340|gb|EAP75637.1| glycine betaine/proline ABC transporter, periplasmic
glycinebetaine/proline-binding protein [Roseovarius
nubinhibens ISM]
Length = 322
Score = 172 bits (435), Expect = 6e-41, Method: Composition-based stats.
Identities = 45/316 (14%), Positives = 84/316 (26%), Gaps = 21/316 (6%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M KI L + F S + C V + W + T + + ++E+ G +
Sbjct: 1 MTKINLATLSVIGFLGSASIAQAECGEVSITEMNWASASVVTTVATFLMEQGYGCAVTVV 60
Query: 61 LLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ P + DI W SL + + L G + V
Sbjct: 61 PSSTVPAVTSVSETGEPDILTELWLSSLPNYAKLEAQGTVRTLTEVLSDGGQEGWWVPQY 120
Query: 120 GFA--LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI-EASE 176
+ + + I +G + + G + G + S
Sbjct: 121 LAEAHPEVTTIEGILANPDLVGGRFHRSPDGWAAAIVDSSLAKAWDLEGNGIEVFAHGSG 180
Query: 177 LASFSQIRRDQRNNIPAVFLSWEP-----------------HPINSDLNIHYLPGGEEIS 219
+ I + P W P N S
Sbjct: 181 ETLATSIAAAYADREPWFGYYWAPTSVLGKFPMVMVDLGEFDADIHACNSKADCANVGKS 240
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+ A V T V + ++ P I +L N+ F+ ++ N + L
Sbjct: 241 PYPRARVITAVTPGFAEENPEIIEMLSNLSFTNDQMGAILAWQEENGASSEEAAVWFLSN 300
Query: 280 HPDLLKNWLIGVTTFD 295
+ D+ W+ +
Sbjct: 301 NSDIWAGWVNDAAREN 316
>gi|296156295|ref|ZP_06839134.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia sp. Ch1-1]
gi|295893801|gb|EFG73580.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia sp. Ch1-1]
Length = 285
Score = 172 bits (435), Expect = 6e-41, Method: Composition-based stats.
Identities = 55/268 (20%), Positives = 110/268 (41%), Gaps = 10/268 (3%)
Query: 23 DSCTPVRFADT-GWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMG 81
D+ ++ GW D AT+ + + ++E+ LGY+ + +A V ++ + +D +
Sbjct: 27 DTKPTIKIGYVEGWDDSVATSNVAARVIEKRLGYQVQLVPVAAGVMWQGVARGDLDATLS 86
Query: 82 YWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAK 141
W P + + + N AK L V D +K D+ K E G +
Sbjct: 87 AWLPVTHGAYWN-NFKDKVVDLGPNFNDAKIGLIVPD---NADVKGVGDLEAKKAEFGGR 142
Query: 142 IYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPH 201
I GI+ G Q+ + I + L+ +S A +++ R + + P + W+PH
Sbjct: 143 IVGIDAGAGVMQKTSEAIKAYGLD---YTLMPSSGSAMTAELARSEAASKPIIVTGWKPH 199
Query: 202 PINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKL 261
+ + + +L +++ G E V +VV + K P + LK ++ + +M
Sbjct: 200 WMFAKYKLKFLDDPKKVFGDAE-HVDSVVNPELEKKAPPVVAFLKKFQWKPGEIDSVMLA 258
Query: 262 ILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
N + + H D + +W+
Sbjct: 259 -TQNGEKPSAAADAWISAHGDRVDSWVK 285
>gi|119383696|ref|YP_914752.1| substrate-binding region of ABC-type glycine betaine transport
system [Paracoccus denitrificans PD1222]
gi|119383940|ref|YP_914996.1| substrate-binding region of ABC-type glycine betaine transport
system [Paracoccus denitrificans PD1222]
gi|119373463|gb|ABL69056.1| Substrate-binding region of ABC-type glycine betaine transport
system [Paracoccus denitrificans PD1222]
gi|119373707|gb|ABL69300.1| Substrate-binding region of ABC-type glycine betaine transport
system [Paracoccus denitrificans PD1222]
Length = 333
Score = 172 bits (435), Expect = 6e-41, Method: Composition-based stats.
Identities = 49/341 (14%), Positives = 96/341 (28%), Gaps = 42/341 (12%)
Query: 1 MYK--ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M + +L L +++ AD C + A W A+ + +L G
Sbjct: 1 MKRSYLLGTAFALPFLALAGPASAD-CGSLTIASMNWQSAELAAALDAFVLGNGYGCTVE 59
Query: 59 IKLLAVPVTFRSL-KNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAV 116
+ T S+ + ++ W + + I L E I + + L GA +
Sbjct: 60 VIQGDTVPTLTSMVEKGQPEVAPEGWVDLVPEVIQSGLAEDRIVVAGDILTDGAVQGWWI 119
Query: 117 NDVGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
+ + I+ G G +
Sbjct: 120 PKYLADANPELKTIDDVLARPDLFPDPEDASKGAIFNGPAGWGGTVITSQLYKAFGAEAA 179
Query: 168 GFRLIE-ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG----------- 215
GF L++ S I R V W P + + L G
Sbjct: 180 GFNLVDTGSAAGLDGSIARAYERQQGWVGYYWAPTALLGRYEMVRLEHGVALDMDEWQNC 239
Query: 216 --------EEISGFGEASVYTVVRSDYLDKCP-NISRLLKNIKFSVALENEMMKLILNNK 266
+ + + V TVV + D P + L +S N +M + +N+
Sbjct: 240 TSNADCAEPKKNDWPTDKVQTVVAKGFADAAPPEVMDYLSRRSWSNDTVNALMAWMTDNQ 299
Query: 267 QDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ + LR + W+ + + +++ +
Sbjct: 300 AQGEDGAKEFLRGNEATWTEWVT-------PEAAEKIKAAL 333
>gi|302550270|ref|ZP_07302612.1| glycine betaine ABC transport system permease [Streptomyces
viridochromogenes DSM 40736]
gi|302467888|gb|EFL30981.1| glycine betaine ABC transport system permease [Streptomyces
viridochromogenes DSM 40736]
Length = 872
Score = 172 bits (435), Expect = 7e-41, Method: Composition-based stats.
Identities = 56/293 (19%), Positives = 108/293 (36%), Gaps = 7/293 (2%)
Query: 11 LTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRS 70
T +++ ++ + W + A+T + LE+ GY+ +K + S
Sbjct: 324 AGTEAVADGKNVGQGKKISIGYIPWDEGVASTFLWKEALEQR-GYEVEVKQFDAGPLYTS 382
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD 130
L +D W P+ + + + L+V GI S +D
Sbjct: 383 LAQGDVDFQTDAWLPTTHAQYWKKYGK-QLDDLGAWYDKTSLELSVPAY--MKGIDSLED 439
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
+ E KI GIE + + K ++++++S A ++++R
Sbjct: 440 LKGKASEFDGKITGIESSAGEMALLKSKVLKAYGLDKEYKVVDSSTPAMLAELKRAYAQK 499
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKF 250
P V W PH +D ++ L + G G+ V+T+ R + P ++ LKN K
Sbjct: 500 KPIVTTLWSPHWAYNDYDLKKLKDPKGAWGEGDG-VHTLSRKGFKGDDPTVAGWLKNFKM 558
Query: 251 SVALENEMMKLILNNKQ-DRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQ 302
S + I + ++Q R L+ +P + + V G P+
Sbjct: 559 SEKELTSLEAEINKAGKGNQQEAVRAWLKQNPGFVDK-MAPVKNAGGGTPAEA 610
Score = 163 bits (411), Expect = 4e-38, Method: Composition-based stats.
Identities = 57/271 (21%), Positives = 107/271 (39%), Gaps = 6/271 (2%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKG 75
A++ P+ A W + A T + +LE GYK N+K + V + L +
Sbjct: 602 AGGGTPAEAKQPLDVAWFPWDEDIAVTYLWKNVLERR-GYKLNLKQMDVGPVYTGLASGD 660
Query: 76 IDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK 135
+D+ W P +K + +K + + +AV G+ S +D+
Sbjct: 661 LDLNFDAWLPYAQKNYWDK-NKDRLKDLGTWYEPTSLEIAVPSYV--KGVDSLEDLKGKS 717
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
KI GIEPG + + K + +++ S A ++++R P
Sbjct: 718 GTFKGKIIGIEPGTGEMDLAKNKVLPAYGLDKEYEVVDGSTPAMLAELKRAYAKKEPIAV 777
Query: 196 LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
W PH SD + L ++ G G ++ T+ + ++ P +++ +KN K S
Sbjct: 778 TLWSPHWAYSDYELTKLKDPKKGFGEG-NTIRTISNEKFPEEYPQLTKWIKNFKMSEDEL 836
Query: 256 NEMMKLILNNKQD-RQFVGRTMLRTHPDLLK 285
+ I Q + L+ HPD+++
Sbjct: 837 GTLESEIKGRGQGHEEEAVAAWLKEHPDMVE 867
>gi|91778530|ref|YP_553738.1| ABC proline/glycine betaine transporter, periplasmic ligand binding
protein [Burkholderia xenovorans LB400]
gi|91691190|gb|ABE34388.1| ABC proline/glycine betaine transporter, periplasmic ligand binding
protein [Burkholderia xenovorans LB400]
Length = 285
Score = 172 bits (435), Expect = 7e-41, Method: Composition-based stats.
Identities = 55/264 (20%), Positives = 109/264 (41%), Gaps = 10/264 (3%)
Query: 27 PVRFADT-GWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYP 85
++ GW D AT+ + + ++E+ LGY+ + +A V ++ + +D + W P
Sbjct: 31 TIKIGYVEGWDDSVATSNVAARVIEKRLGYQVQLVPVAAGVMWQGVARGDLDATLSAWLP 90
Query: 86 SLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGI 145
+ + + N AK L V D +KS D+ K E G +I GI
Sbjct: 91 VTHGAYWN-NFKDKVVDLGPNFNDAKIGLIVPD---NADVKSVGDLEAKKTEFGGRIVGI 146
Query: 146 EPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINS 205
+ G Q+ + I + L+ +S A +++ R + + P + W+PH + +
Sbjct: 147 DAGAGVMQKTSEAIKAYGLD---YTLMPSSGSAMTAELARSEAASKPIIVTGWKPHWMFA 203
Query: 206 DLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNN 265
+ +L +++ G E V +VV + K P + LK ++ + +M N
Sbjct: 204 KYKLKFLDDPKKVFGEAE-HVDSVVNPELEKKAPPVVAFLKKFQWKPGEIDSVMLA-TQN 261
Query: 266 KQDRQFVGRTMLRTHPDLLKNWLI 289
+ + H D + +W+
Sbjct: 262 GEKPTAAADAWISAHGDRVDSWVK 285
>gi|298488190|ref|ZP_07006227.1| ABC transporter, periplasmic substrate-binding protein, putative
[Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
gi|298157469|gb|EFH98552.1| ABC transporter, periplasmic substrate-binding protein, putative
[Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
Length = 337
Score = 172 bits (435), Expect = 7e-41, Method: Composition-based stats.
Identities = 51/342 (14%), Positives = 108/342 (31%), Gaps = 43/342 (12%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+ ++L L A A+ P++F W + T + ++E+ GY+T+
Sbjct: 4 ITRLLGCSLLALGLLGQTAGAAEKNAPIQFGALTWESGSLITEVLRTLVEKGYGYRTDTL 63
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ +L I + W +G + + ++GA V +
Sbjct: 64 PGSTVSLETALAKNDIQVIAEEW-TGRSPVWVKAEADGKVLGLGNIVKGATEGWWVPEYV 122
Query: 121 FA-----------LGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNN 162
+KS D+A+YK + G +
Sbjct: 123 IKGDAAKGIKPVAPDLKSVADLARYKDVFKDPESPDKGRFLNSPSGWTSEIVNTQKLKAY 182
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG-EEISGF 221
+ S A +++ R P +F W P P+ + L + +
Sbjct: 183 GLTDSFVNFRTGSGAALDAEVASAIRRGKPVLFYYWSPTPLLGKYKLIKLEEPAFDAEAW 242
Query: 222 G----------------EASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNN 265
A++ V +++ + P + + KN+ F + L N + + +
Sbjct: 243 KTLTDASNPNPRGTSSLAATLSIGVSAEFSKQYPELVSVFKNVDFPIDLLNRTLGEMSDK 302
Query: 266 KQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+D L+ HP++ K WL D + ++ +
Sbjct: 303 HEDPGVAAARFLKQHPEVWKAWLP-------ADVAAKVSHSL 337
>gi|297161909|gb|ADI11621.1| putative glycine betaine ABC transporter substrate-binding and
permease component [Streptomyces bingchenggensis BCW-1]
Length = 874
Score = 172 bits (435), Expect = 8e-41, Method: Composition-based stats.
Identities = 63/315 (20%), Positives = 114/315 (36%), Gaps = 19/315 (6%)
Query: 1 MYKILAVCLFLTTFSISYA--------RDADSCTPVRFADTGWTDIAATTAMTSVILEEI 52
M ++ + L ++ D + V+ W + A+T + ILE+
Sbjct: 305 MVGVIVLALVAGGLNVFGGDDDGQKVTADVGKGSTVKLGYINWDEGVASTYLWKEILEQR 364
Query: 53 LGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKY 112
G+K ++ V F + ID+ W P+ ++ ++ +
Sbjct: 365 -GFKPQLQTYDVGALFTGMAAGDIDMQTDAWLPATHASYWKQYKD-QLEDLGTWYDKTSL 422
Query: 113 MLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+AV +KS D+ KI GIEPG + + D + + + L+
Sbjct: 423 EVAVPSYV--KDVKSLDDLKGKAGTFKGKIIGIEPGAGEMKIMKDKVLPDYDLNGEYTLV 480
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRS 232
+ S SQ+ R P W PH S + L + G G+ ++T+ R
Sbjct: 481 KGSTAGMLSQLERSYAKKEPVAVTLWSPHWAYSKYKLTKLADPKGAFGKGDG-IHTIGRK 539
Query: 233 DYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQ-DRQFVGRTMLRTHPDLLKNWLIGV 291
+ K P I++ +KN K S + I + + +Q R L+ +P L+ L
Sbjct: 540 GFSQKQPQIAKWMKNFKLSEKQLTSLEAAIQDAGKGKQQEGVRAWLKKNPGLVDK-LAPA 598
Query: 292 ----TTFDGQDPSRQ 302
TT G+
Sbjct: 599 GGAGTTTQGKQAGAA 613
Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats.
Identities = 50/279 (17%), Positives = 98/279 (35%), Gaps = 6/279 (2%)
Query: 9 LFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTF 68
L + + + + R W + ATT + +LE+ GYK +IK V F
Sbjct: 595 LAPAGGAGTTTQGKQAGAAPRIGYFPWDEDIATTYLWKNVLEKR-GYKPSIKQYDVGSMF 653
Query: 69 RSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSY 128
+ ID+ W P +K ++ ++ + +AV +KS
Sbjct: 654 TGMSAGQIDVEFDGWLPVAQKQYWDRYKK-NLVDIGPWYDKTSLEIAVPSYV--KDVKSL 710
Query: 129 QDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQR 188
D+ + KI GIEPG Q + + K + + + A +Q+ R
Sbjct: 711 ADLKGKADKFKGKIIGIEPGTGEMQLLKSTVLKEYDLDKEYEVTNNASPAMLAQLERSYA 770
Query: 189 NNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI 248
P + W PH S + L ++ G + ++ + K LKN
Sbjct: 771 KKEPVAVVLWTPHWAYSKYQLTKLADPKKAFG-ANNEIRSLGHKSFPKKYSEFYGWLKNW 829
Query: 249 KFSVALENEMMKLILNNKQ-DRQFVGRTMLRTHPDLLKN 286
+ + + + + + + + + + HP ++
Sbjct: 830 HMTEQELASLEQAVQDAGKGNAEKGVQKWIDAHPGIVDK 868
>gi|330957625|gb|EGH57885.1| histidine transporter, periplasmic histidine-binding protein
[Pseudomonas syringae pv. maculicola str. ES4326]
Length = 337
Score = 171 bits (434), Expect = 8e-41, Method: Composition-based stats.
Identities = 53/342 (15%), Positives = 109/342 (31%), Gaps = 43/342 (12%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+ ++L L AD+ P+RF W + T + ++E+ GY T+
Sbjct: 4 LTRLLGCSLLALGLLGQSVSAADNAAPIRFGALTWESGSLITEVLRTLVEKGYGYPTDTL 63
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ +L I + W +G + V + ++GA V +
Sbjct: 64 PGSTVSLETALAKNDIQVIAEEW-TGRSPVWIKAEADGKVFGVGDIVKGATEGWWVPEYV 122
Query: 121 -----------FALGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNN 162
A +KS D+A+YK + G +
Sbjct: 123 IKGDAAKGIKPMAPDLKSVTDLARYKDVFKDPESPDKGRFLNSPSGWTSEIVNTQKLKAY 182
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE-EISGF 221
+ S A ++I R P +F W P P+ + L + +
Sbjct: 183 GLNDSFINFRTGSGAALDAEIASSIRRGKPVLFYYWSPTPLLGSYKLIKLEEPPFDADAW 242
Query: 222 G----------------EASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNN 265
A++ V +++ + P + + + + + L N + +
Sbjct: 243 KTLTDASNPAPRGSASLPANLSVGVSAEFKKQYPELVSVFEKVDLPIDLLNTTLGEMSAK 302
Query: 266 KQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+D + V + L+ HP++ K WL D + ++ +
Sbjct: 303 HRDPKVVAQDFLKQHPEIWKAWLP-------VDVANKVSAGL 337
>gi|289624881|ref|ZP_06457835.1| histidine transporter, periplasmic histidine-binding protein
[Pseudomonas syringae pv. aesculi str. NCPPB3681]
gi|289650726|ref|ZP_06482069.1| histidine transporter, periplasmic histidine-binding protein
[Pseudomonas syringae pv. aesculi str. 2250]
gi|330869210|gb|EGH03919.1| histidine transporter, periplasmic histidine-binding protein
[Pseudomonas syringae pv. aesculi str. 0893_23]
Length = 322
Score = 171 bits (434), Expect = 8e-41, Method: Composition-based stats.
Identities = 54/330 (16%), Positives = 108/330 (32%), Gaps = 33/330 (10%)
Query: 1 MYKILAVCLFLTTFSISY-----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M K L L S A +S PV+FA W T + V+L++ G
Sbjct: 3 MKKALLTTLVSAGLLASAGTSQAAGWCESGKPVKFAGLNWESAMLLTDILQVVLDKGYGC 62
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
+ +L I IF W + + G + V + GA
Sbjct: 63 TVDALPGNSIAMENALSTNDIQIFAEEWV-GRSEVWSKAAAAGKVVGVGAPIVGAVEGWY 121
Query: 116 VNDV-----------GFALGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILD 157
V A +KS D+A+Y + Y G +
Sbjct: 122 VPRYVIEGDAKRKLEAKAPNLKSISDLAQYSAVFKDQEEPGKGRFYNCPAGWTCELENSE 181
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
M+ + K + A + I + P + W P P+ +++ L +
Sbjct: 182 MLKSYGLESKYTNFRPGTGPALDAAILSSYKRGEPILTYYWSPTPLMGQVDLVRLEE--K 239
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTML 277
+ V + D+ P + +L+ + + L N+ + + + + + + L
Sbjct: 240 AGVNKTIDIKVGVSKVFHDEAPELVAILEKVNLPIDLLNQNLGRMAKERIESPKLAKIFL 299
Query: 278 RTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ HP++ W+ +D +++++ +
Sbjct: 300 KEHPEVWHKWVS-------EDAAKKVDASL 322
>gi|330965522|gb|EGH65782.1| histidine transporter, periplasmic histidine-binding protein
[Pseudomonas syringae pv. actinidiae str. M302091]
Length = 322
Score = 171 bits (434), Expect = 8e-41, Method: Composition-based stats.
Identities = 51/330 (15%), Positives = 105/330 (31%), Gaps = 33/330 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDAD-----SCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M K L L S S PV+FA W T + VIL++ G
Sbjct: 3 MKKALLTTLVSAGLLTSAGASQAAGWCESGKPVKFAGLNWESAMLLTDVLQVILDKGYGC 62
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
+ +L I +F W + G + + + GA
Sbjct: 63 TVDALPGNSIAMENALSTNDIQVFAEEWV-GRSEVWNKAAAAGKVVGIGAPIVGAVEGWY 121
Query: 116 VNDV-----------GFALGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILD 157
V A +KS D+A+Y + Y G +
Sbjct: 122 VPRYVIEGDAKRKLEAKAPNLKSISDLAQYSAVFKDQEEPGKGRFYNCPAGWTCELENSE 181
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
M+ + K + A + I + P + W P P+ +++ L +
Sbjct: 182 MLKSYGLENKYTNFRPGTGPALDAAILSSYKRGEPILTYYWSPTPLMGQVDLVRLEE--K 239
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTML 277
+ V + ++ P + +L+ + + L N+ + + + + + + L
Sbjct: 240 AGVNKTIDIKVGVSKVFHEQAPELVAVLEKVNLPIDLLNQNLGRMAKERIESPKLAKIFL 299
Query: 278 RTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ HP++ W+ +D +++++ +
Sbjct: 300 KEHPEVWHKWVS-------EDAAKKVDASL 322
>gi|72163327|ref|YP_290984.1| glycine betaine transport system permease [Thermobifida fusca YX]
gi|71917059|gb|AAZ56961.1| glycine betaine transport system permease protein [Thermobifida
fusca YX]
Length = 313
Score = 171 bits (434), Expect = 9e-41, Method: Composition-based stats.
Identities = 61/268 (22%), Positives = 106/268 (39%), Gaps = 9/268 (3%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
+ A W + ATT M VILEE L Y+ I + V ++ + N ID+F
Sbjct: 41 ASGHDGKQIEIALIPWEEAIATTHMWKVILEE-LDYEVTITEVDVAPMYQGVANGDIDMF 99
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
+ W P E ++ + A L V + S D+A + G
Sbjct: 100 LDTWLPLTHGDYWEEYGE-QVEDLGAWYDNAVLTLTVPSYVDE--VDSIADLADHADLFG 156
Query: 140 AKIYGIEPGNE-GNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
+I GIE G+ + I + LIE+S A +++ + P V W
Sbjct: 157 GRIVGIESGSGLVRTTKEEAIPTYGLDD--YELIESSTAAMLAELDSAISDEEPIVVTLW 214
Query: 199 EPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEM 258
PH + ++ L E G G ++ V R + + P ++ L+N + S + +
Sbjct: 215 RPHIAYAQYDLKDLEDPEGAMG-GAEEIHAVGRKGFSEDFPELAEWLRNFELSDEELSSL 273
Query: 259 MKLILNNKQ-DRQFVGRTMLRTHPDLLK 285
+ +L + + D + R L +P+ L+
Sbjct: 274 EQAVLADHEDDPEAGAREWLTANPEFLE 301
>gi|152988518|ref|YP_001351149.1| ABC transporter periplasmic binding protein [Pseudomonas aeruginosa
PA7]
gi|150963676|gb|ABR85701.1| probable binding protein component of ABC transporter [Pseudomonas
aeruginosa PA7]
Length = 322
Score = 171 bits (434), Expect = 9e-41, Method: Composition-based stats.
Identities = 52/328 (15%), Positives = 103/328 (31%), Gaps = 32/328 (9%)
Query: 2 YKILAVCLFLTTFSISYARDAD----SCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
+L+V L + S A+ S V+FA W T + +L + G T
Sbjct: 5 KSMLSVFCALGLLAASAGAQAEGWCESGKAVKFAGLNWESGTLLTELMQFVLAKGYGCAT 64
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+ ++L I +F W G + V + GA V
Sbjct: 65 DSLPGNSITMEQALSTNDIQVFAEEWI-GRSDAWNKAAAAGKVVGVGAPIVGAVEGWYVP 123
Query: 118 DVGFA-----------LGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMI 159
++S D+A+Y + + Y G +M+
Sbjct: 124 RYVIEGDPQRKLEARAPNLRSIADLAQYAEVFRDQEEPDKGRFYNCPAGWTCELENSEML 183
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
K + A + + R P +F W P P+ ++ L +
Sbjct: 184 KGYGLEGKFTNFRPGTGPALDAAVLSSYRRGEPILFYYWSPTPLMGRADLVRLEEKPGVD 243
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+ + + D+ P + +L+ + + L N + + + D + R L
Sbjct: 244 K--SIRIQVGLSRTFHDQAPELVAVLEKVNLPIDLLNANLARMAKERIDAARLAREFLEK 301
Query: 280 HPDLLKNWLIGVTTFDGQDPSRQLERFM 307
HP++ W+ D ++++E +
Sbjct: 302 HPEVWHAWVD-------ADAAKKIEAAL 322
>gi|293603965|ref|ZP_06686379.1| ABC superfamily ATP binding cassette transporter, binding protein
[Achromobacter piechaudii ATCC 43553]
gi|292817658|gb|EFF76725.1| ABC superfamily ATP binding cassette transporter, binding protein
[Achromobacter piechaudii ATCC 43553]
Length = 343
Score = 171 bits (434), Expect = 9e-41, Method: Composition-based stats.
Identities = 49/319 (15%), Positives = 97/319 (30%), Gaps = 34/319 (10%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNK 74
+ + P+RF+ W + +LE G KT +++ +L+
Sbjct: 30 TTPSTATCEVNRPIRFSGLNWESNLVLAGIERYVLEHGYGCKTTVEIGETLPMLTALQRG 89
Query: 75 GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA--LGIKSYQDIA 132
+D+ W +E L G + V A V +KS D+A
Sbjct: 90 DVDVTPEVWPGQIEGAWKKALASGKVLGVGHVY-DAGEGWYVPRYTIERHPELKSAADLA 148
Query: 133 KYKKELGA-------KIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
+ K +IYG G +++ K S A + I
Sbjct: 149 RMKDVFADPEDPGRGRIYGCPAGWACGTLNDNLLRALKLDKDYALFAPGSGAAQKAAIVS 208
Query: 186 DQRNNIPAVFLSWEPHPINSDLN-------------IHYLPGGEEISG----FGEASVYT 228
+ VF W P + L+ + + + F V T
Sbjct: 209 AYKRKRDIVFYYWTPTSLVGALDLVKLELPAFDQAAYTCMTDPKCANPVATEFKPNPVVT 268
Query: 229 VVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
V + + P I+ L + N + + N ++ + R L+ + + + W+
Sbjct: 269 GVNAAFAKDAPKITEFLGKLTVPDDAINATLGWLENEGKEPEDAARYFLKQYGPVWRAWM 328
Query: 289 IGVTTFDGQDPSRQLERFM 307
D + +++ +
Sbjct: 329 P-------TDVADRVQAAL 340
>gi|330966205|gb|EGH66465.1| glycine betaine-binding protein [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 284
Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats.
Identities = 59/291 (20%), Positives = 113/291 (38%), Gaps = 12/291 (4%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADT-GWTDIAATTAMTSVILEEILGYKTNI 59
M KIL L S A++ + GW+D ATT + S ++++ LGY +
Sbjct: 3 MRKILGAGAALVLAVSSTLAIAET-KTLTIGYVEGWSDSVATTFVASEVIKQKLGYDVKL 61
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ +A + ++++ +D+ + W P ++ + N + AK L V +
Sbjct: 62 QSVAAGIMWQAVATDKLDLMLSAWLPVTHGEYYTKYKD-QVVNYGPNFKDAKIGLIVPEY 120
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
A I+ K KI GI+ G+ + I + G++L +S
Sbjct: 121 VKAKSIEDL----KTDASFNKKITGIDAGSGVMLKTDQAIKDYDLD--GYKLQASSGAGM 174
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+++ R ++ V W PH + + + +L + + G +V V K P
Sbjct: 175 IAELTRAEKAQKAIVVTGWVPHWMFAKWKLRFLDDPKGVYG-AAETVDNVASLTLEKKAP 233
Query: 240 NISRLLKNIKF-SVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+ LK ++ S E+M I + + + + HPD + W
Sbjct: 234 EVVAFLKKFQWASKDEIGEVMLAI-QDGAKPEAAAKDWVAKHPDRVAAWTA 283
>gi|298489260|ref|ZP_07007277.1| histidine ABC transporter, histidine-binding protein [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
gi|298156224|gb|EFH97327.1| histidine ABC transporter, histidine-binding protein [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
Length = 322
Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats.
Identities = 54/330 (16%), Positives = 108/330 (32%), Gaps = 33/330 (10%)
Query: 1 MYKILAVCLFLTTFSISY-----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M K L L S A +S PV+FA W T + V+L++ G
Sbjct: 3 MKKALLTTLVSAGLLASAGTSQAAGWCESGKPVKFAGLNWESAMLLTDILQVVLDKGYGC 62
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
+ +L I IF W + + G + V + GA
Sbjct: 63 TVDALPGNSIAMENALSTNDIQIFAEEWV-GRSEVWSKAAAAGKVVGVGAPIVGAVEGWY 121
Query: 116 VNDV-----------GFALGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILD 157
V A +KS D+A+Y + Y G +
Sbjct: 122 VPRYVIEGDAKRKLEAKAPNLKSISDLAQYSAVFKDQEEPGKGRFYNCPAGWTCELENSE 181
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
M+ + K + A + I + P + W P P+ +++ L +
Sbjct: 182 MLKSYGLESKYTNFRPGTGPALDAAILSSYKRGEPILTYYWSPTPLMGQVDLVRLEE--K 239
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTML 277
+ V + D+ P + +L+ + + L N+ + + + + + + L
Sbjct: 240 AGVNKTIDIKVGVSKVFHDEAPELVAILEKVNLPIDLLNQNLGRMAKERIESPKLAKIFL 299
Query: 278 RTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ HP++ W+ +D +++++ +
Sbjct: 300 KEHPEVWHKWIS-------EDAAKKVDASL 322
>gi|187919775|ref|YP_001888806.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia phytofirmans PsJN]
gi|187718213|gb|ACD19436.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia phytofirmans PsJN]
Length = 285
Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats.
Identities = 54/266 (20%), Positives = 111/266 (41%), Gaps = 10/266 (3%)
Query: 25 CTPVRFADT-GWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYW 83
++ GW D AT+ + + ++E+ LGY+ + +A V ++ + +D + W
Sbjct: 29 KPTIKIGYVEGWDDSVATSNVAARVIEKRLGYQVTLVPVAAGVMWQGVARGDLDATLSAW 88
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIY 143
P + + + N AK L V + +KS D+ K E G++I
Sbjct: 89 LPVTHGAYWN-NFKDKVVDLGPNFNDAKIGLIVPENV---DVKSLGDLEAKKAEFGSRIV 144
Query: 144 GIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPI 203
GI+ G Q+ + I ++L+ +S A +++ R + + P + W+PH +
Sbjct: 145 GIDAGAGVMQKTSEAIKAYGLD---YQLMPSSGSAMTAELARSEAASKPIIVTGWKPHWM 201
Query: 204 NSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLIL 263
+ + +L +++ G E V +VV + K P + LK ++ + +M
Sbjct: 202 FAKYKLKFLDDPKKVFGEAE-HVDSVVNPELEKKAPPVVAFLKKFQWKPGEIDSVMLA-T 259
Query: 264 NNKQDRQFVGRTMLRTHPDLLKNWLI 289
N + + H D + +W+
Sbjct: 260 QNGEKPTAAADAWISAHGDRVDSWVK 285
>gi|332687054|ref|YP_004456828.1| glycine betaine ABC transporter permease OpuAB/ Glycine betaine ABC
transporter glycine betaine-binding protein OpuAC
[Melissococcus plutonius ATCC 35311]
gi|332371063|dbj|BAK22019.1| glycine betaine ABC transport system, permease protein OpuAB/
Glycine betaine ABC transport system, glycine
betaine-binding protein OpuAC [Melissococcus plutonius
ATCC 35311]
Length = 263
Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats.
Identities = 58/270 (21%), Positives = 106/270 (39%), Gaps = 10/270 (3%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
+ + W A+T + + +L++ GY N+ L + ++S+ D
Sbjct: 3 SSTKENKQISLSYVEWDTEVASTNVLAEVLKDQ-GYTVNLTPLDNSIMWKSIAQGETDAT 61
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
W P + ++++ NL+GAK L V D K I K +
Sbjct: 62 ASAWLPRTHAAQYKQY-KNQLEVLGPNLKGAKLGLVVPDYM-----KDTNSITDLKDQAN 115
Query: 140 AKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWE 199
KI GI+PG +L + + +S A + + + ++ P V W
Sbjct: 116 KKITGIDPGAGVVTAAEKTQKEYS-NLDDWSVDTSSSGAMTAALDQAMKHKQPIVITGWS 174
Query: 200 PHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMM 259
PH + + ++ YL + S GE S++T+ R + P +LK ++ +M
Sbjct: 175 PHWMFAKYHLKYLDDPKG-SMGGEESIHTITRKGLKQEKPQAYEILKRFHWTKKDIESVM 233
Query: 260 KLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
I N +D + V R + TH +K W+
Sbjct: 234 LKI-NKGEDPKQVARDWVDTHQSQVKEWVK 262
>gi|326780348|ref|ZP_08239613.1| ABC-type glycine betaine transport, periplasmic subunit
[Streptomyces cf. griseus XylebKG-1]
gi|326660681|gb|EGE45527.1| ABC-type glycine betaine transport, periplasmic subunit
[Streptomyces cf. griseus XylebKG-1]
Length = 873
Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats.
Identities = 56/308 (18%), Positives = 113/308 (36%), Gaps = 18/308 (5%)
Query: 4 ILAVCLFLTTFSISYARDAD---------SCTPVRFADTGWTDIAATTAMTSVILEEILG 54
I+ + L + S+ D V W + A+T + +LE+ G
Sbjct: 307 IVVLALVAGSMSMFGGSKDDTAGEAARIGDGKKVSIGYIPWDEGIASTFLWKEMLEQR-G 365
Query: 55 YKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
++ ++K + + N ID W P ++ ++ + L
Sbjct: 366 FEVDVKQYEAGALYTGMANGQIDFQTDSWLPVTHASYWAKYKD-RLEDLGAWYSPTSLEL 424
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
AV +++ D+ E +I GIEP + D + K ++LI+
Sbjct: 425 AVPAY--MKDVQTMDDLKGRASEFKGRIVGIEPSAGEMGLLKDKLLPGYGLDKEYKLIDG 482
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDY 234
S + ++++R P V W PH ++ ++ L + + G G+ V+++ R +
Sbjct: 483 STPSMLAELKRAYAKKEPIVVPLWSPHWAYNEYDLTKLKDPKGLWGKGDG-VHSLARKGF 541
Query: 235 LDKCPNISRLLKNIKFSVALENEMMKLILNNK-QDRQFVGRTMLRTHPDLLKNWL---IG 290
+ P +++ +K+ K S + I Q RT L+ +P + W
Sbjct: 542 SAENPEVAQWVKDFKMSEKQLTSLEAEIQKAGSGKEQEAVRTWLKDNPGVADKWTPVPKD 601
Query: 291 VTTFDGQD 298
G+D
Sbjct: 602 AKADGGKD 609
Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats.
Identities = 46/271 (16%), Positives = 104/271 (38%), Gaps = 6/271 (2%)
Query: 17 SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGI 76
+ + V A W + A T + +LEE GYK N+K V + ++ I
Sbjct: 604 ADGGKDERDRAVEVAWFPWEEDIAATYLWKAVLEER-GYKINLKQFEVGPMYAAMSRGQI 662
Query: 77 DIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKK 136
D+ W P +K + + + +AV D +K+ D+
Sbjct: 663 DVQFDGWLPYTQKNYWDKYGD-KLTDIGSWYGPTSIEVAVPDYV--KDVKTLDDLKGKGS 719
Query: 137 ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFL 196
+ +I GIEPG + + + + + ++++++S ++++R P L
Sbjct: 720 DFKGRIVGIEPGTATMENLKKNVLPSYGLDEEYKVLDSSTPGMLAELKRAYAKKEPIAVL 779
Query: 197 SWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALEN 256
W PH ++ + L ++ G G+ ++T+ ++ + P +++ K+ K +
Sbjct: 780 LWTPHWAYNEYGMTKLKDPKKAFGEGD-RLHTIASKEFPKQYPQLTKWFKDFKLTEEQLG 838
Query: 257 EMMKLILNNKQD-RQFVGRTMLRTHPDLLKN 286
+ I + + + +P +
Sbjct: 839 GLENEIQKRGAGHEEEAVKAWMDENPGIADT 869
>gi|149913629|ref|ZP_01902162.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Roseobacter sp. AzwK-3b]
gi|149812749|gb|EDM72578.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Roseobacter sp. AzwK-3b]
Length = 316
Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats.
Identities = 44/312 (14%), Positives = 100/312 (32%), Gaps = 25/312 (8%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL 62
K++ L S + + ADS P+ W+ + + I E LG
Sbjct: 4 KVIMSAAVLAVSSATASFAADSSDPIIIPTHNWSSQIVMSHVVGQIFES-LGNSVEYVST 62
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
+ S++ + + + W + LE+G + V ++ + +
Sbjct: 63 DSQAVYESVRLGDVTLELEVWEGAFGPSFEAALEKGGLHDVGDHDAVTREDWWYPEWTKE 122
Query: 123 --LGIKSYQDIAKYKKELGAKIYGIEP---GNEGNQRILDMINNNKFSLKGFRLIEASEL 177
G+ ++ + + G + G + D + + + S
Sbjct: 123 SCPGLPDWEALNACAELFATPETGDKGRFLGGPVDWLKHDQERVDALGMNFVVVNAGSAS 182
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG-------------------EEI 218
A ++++ +R+ P V +W P+ + + ++ +
Sbjct: 183 ALWAEVAAAERDKRPVVIFNWTPNFVEALYPGEFVEFPAYSEGCKTDPAVGPNPTATYDC 242
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLR 278
+ DK PN +L+ I F+ EM KL+ ++ + + L
Sbjct: 243 GNPANGYLKKAAWDGMKDKWPNAYAVLERISFTNPQIAEMAKLVDIDEFEPEDAAAEWLE 302
Query: 279 THPDLLKNWLIG 290
+ + K W+ G
Sbjct: 303 QNEAIWKPWVEG 314
>gi|325273113|ref|ZP_08139412.1| glycine betaine ABC transporter substrate-binding protein
[Pseudomonas sp. TJI-51]
gi|324101752|gb|EGB99299.1| glycine betaine ABC transporter substrate-binding protein
[Pseudomonas sp. TJI-51]
Length = 286
Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats.
Identities = 56/289 (19%), Positives = 106/289 (36%), Gaps = 14/289 (4%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNI 59
M + L V L + A V W D ATT + + ++++ LGY +
Sbjct: 7 MRRFLGVGTALVLGLSAAQAMA---KEVSIGYVDGWADSVATTNVAAEVIKQKLGYDVKL 63
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ +A + ++ + +D + W P + ++ N + AK L V +
Sbjct: 64 QAVATGIMWQGVATGKLDAMLSAWLPVTHGEYW-AKNKDNVVDYGANFKDAKIGLIVPEY 122
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
A I K KI GI+ G+ + I + G++L +S A
Sbjct: 123 VKATSIADL----KTDNSFKQKIVGIDAGSGVMIKTEQAIKDYDL--TGYKLQASSGAAM 176
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+++ R W PH + + + +L + + G +V ++ + K P
Sbjct: 177 TAELGRAYAKQQSIAVTGWVPHWMFAKWKLKFLEDPKGVYG-ASETVNSIGSKELATKAP 235
Query: 240 NISRLLKNIKF-SVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
++ LK + S E+M I + + + HPD +K W
Sbjct: 236 EVAEFLKKFSWQSKDEIGEVMLAI-QEGAKPEAAAKDWVAKHPDRVKEW 283
>gi|126649899|ref|ZP_01722135.1| glycine betaine ABC transporter glycine betaine-binding protein
[Bacillus sp. B14905]
gi|126593618|gb|EAZ87563.1| glycine betaine ABC transporter glycine betaine-binding protein
[Bacillus sp. B14905]
Length = 290
Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats.
Identities = 55/277 (19%), Positives = 98/277 (35%), Gaps = 11/277 (3%)
Query: 17 SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGI 76
S + A W A+T + +LE LGY + L + + +L N +
Sbjct: 24 SADAGTKDKKEINLAYVEWDTEVASTHVIGQVLE-NLGYDVTLTPLDNGIMWEALANGEV 82
Query: 77 DIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKK 136
D + W P ++ I+ + ENL GAK L V I
Sbjct: 83 DGMVSAWLPQTHAPQVEKYKD-KIENLGENLTGAKIGLVVPSYM------DVNSIEDLTN 135
Query: 137 ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFL 196
+ I GIEPG + +L+G+ ++ +S A + + + NN +
Sbjct: 136 QANKTITGIEPGANMMATTENAYKEYH-NLEGWNVLTSSAGAMTAALSQAISNNEEIIIT 194
Query: 197 SWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALEN 256
W PH I + ++ YL +++ G E + T R + +L ++
Sbjct: 195 GWSPHWIFNAYDLKYLEDPKDLYGTEEY-IGTFARKGLKEDASEAYDVLNRFHWTAEDIE 253
Query: 257 EMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
+M I+ + + + D + W V T
Sbjct: 254 SVMFDIM-EGMSATDAAKKWINNNQDKVAEWTKDVKT 289
>gi|295839824|ref|ZP_06826757.1| glycine betaine/proline ABC transporter, permease/substrate-binding
protein [Streptomyces sp. SPB74]
gi|295827665|gb|EDY44702.2| glycine betaine/proline ABC transporter, permease/substrate-binding
protein [Streptomyces sp. SPB74]
Length = 1148
Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats.
Identities = 53/278 (19%), Positives = 104/278 (37%), Gaps = 8/278 (2%)
Query: 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDI 78
A D V W + A+T + ILE+ G+K + K + + N +D
Sbjct: 330 ATDVGKGETVSVGYIPWDEGVASTFLWKDILEQR-GFKVSAKQYEAGSLYTGMANGQVDF 388
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL 138
W P+ + ++ + +AV G+KS D+ + E
Sbjct: 389 QTDSWLPTTHAQYWKKYGD-KLEDMGAWYGPTSLEVAVPSYV--KGVKSTADLKGKESEF 445
Query: 139 GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
+I GIEP + D + + L +++I+ S +++ R + P W
Sbjct: 446 KNRIVGIEPSAGEMGLLKDKV-VKDYGLSKYKVIDGSTPGMLAELDRAYKKKEPIAVTLW 504
Query: 199 EPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEM 258
PH ++ L + G G+ V+T+ R + P ++ LK+ K +
Sbjct: 505 SPHWAYDKYDLTKLSDPKGSWGKGD-EVHTLARKGFSKDFPEAAQWLKDFKLDEKQLGSL 563
Query: 259 MKLILNNKQ-DRQFVGRTMLRTHPDLLKNWLIGVTTFD 295
I + + +Q ++ ++ +P ++ L V D
Sbjct: 564 EAEIQDAGKGKQQEAVKSWIKKNPGIVDK-LAPVQKTD 600
Score = 165 bits (418), Expect = 6e-39, Method: Composition-based stats.
Identities = 53/283 (18%), Positives = 107/283 (37%), Gaps = 11/283 (3%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGY 82
V+ W + A++ + ILE G+K + K + + N +D
Sbjct: 604 GKGKTVQMGFIPWDEGIASSYLWKEILERR-GFKVSAKQYEAGALYTGMANGQVDFQTDS 662
Query: 83 WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKI 142
W P+ + ++ + +AV G+KS D+ + E +I
Sbjct: 663 WLPTTHAQYWKKYGD-KLEDMGAWYGPTSLEVAVPSYV--KGVKSTADLKGKESEFKNRI 719
Query: 143 YGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP 202
GIEP + D + + L +++I+ S +++ R + P W PH
Sbjct: 720 VGIEPSAGEMGLLKDKV-VKDYGLSKYKVIDGSTPGMLAELDRAYKKKEPIAVTLWSPHW 778
Query: 203 INSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI 262
++ L +E G G+ V+T+ R + D P ++ LK+ K S + I
Sbjct: 779 AYDKYDLTKLSDPKESWGKGD-EVHTLARKGFSDDFPEAAQWLKDFKLSEKQLASLEGAI 837
Query: 263 LNNKQ-DRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLE 304
+ + +Q + ++ +P ++ L V G + ++
Sbjct: 838 QDAGKGKQQQAVQGWIKDNPGIVDK-LAPVK---GGSSASAVD 876
Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats.
Identities = 51/268 (19%), Positives = 106/268 (39%), Gaps = 6/268 (2%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
+ + A W + A T + +L+E GYK N+K V + ++ +D+
Sbjct: 882 GKDERSRAINVAWFPWEEDIAATYLWKHVLDER-GYKMNLKQFEVGPMYAAMARNQLDVQ 940
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
W P +K + V E +AV +KS D+ E G
Sbjct: 941 FDGWLPYTQKNYWDKYGS-KLTKVGEWYSPTSLEIAVPSYV--KDVKSLADLKGKGDEFG 997
Query: 140 AKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWE 199
++ GIEPG + + + + K +++++ S S+++R P + W
Sbjct: 998 GRVIGIEPGTATMDILKNKVLPSYGLDKEYKVVDGSTPGMLSELKRAYAKKEPIAVMLWS 1057
Query: 200 PHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMM 259
PH + ++ L + G G+ + TV ++ + P +++ LK+ K S + +E+
Sbjct: 1058 PHWAYNQYDLTKLKDPKGSFGKGD-RITTVASKEFPKQYPQLTKWLKDFKLSDSQLSELE 1116
Query: 260 KLILNNKQDRQF-VGRTMLRTHPDLLKN 286
+ + ++ +PD++
Sbjct: 1117 NELHKQGTGHEDEAVDNWVKKNPDIVDK 1144
>gi|209549730|ref|YP_002281647.1| substrate-binding region of ABC-type glycine betaine transporter
[Rhizobium leguminosarum bv. trifolii WSM2304]
gi|209535486|gb|ACI55421.1| Substrate-binding region of ABC-type glycine betaine transport
system [Rhizobium leguminosarum bv. trifolii WSM2304]
Length = 331
Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats.
Identities = 55/338 (16%), Positives = 101/338 (29%), Gaps = 38/338 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M L +F SI +A C V A+ W +ILE+ G I
Sbjct: 1 MKTFLIPAVFAAALSIVAPAEAAECGKVSIAEMKWASAGIAANFDKIILEKGYGCSVTIV 60
Query: 61 LLAVPVTF-RSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVND 118
TF + DI YW S+ + + G + AE L GA +
Sbjct: 61 DGDTLPTFASMNEKGTPDIASEYWINSVRALLDQAVNAGRLVQGAEILADGAVEGWWIPK 120
Query: 119 VGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
+K + +Y P ++ KGF
Sbjct: 121 FIADANPDIRSVEDALKHPELFPAEDDASKGAVYNCPPDWSCQISTTNLFKALAADKKGF 180
Query: 170 RLIE-ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISG-------- 220
L+E S + I R N + + W P + ++ L G +
Sbjct: 181 ELVETGSPERLDASIARAFENKVGWLGYYWAPTAVLGKYDMTRLSFGVGHNKTEWDRCTA 240
Query: 221 -----------FGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDR 269
+ + +T++ + + ++ LK K+ N+++ N +
Sbjct: 241 VAGCMRPELNSYPVSRAFTLMTRSFASRSGPVTTYLKTRKWDNQTINQVLAWQDENHESN 300
Query: 270 QFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ LR + L W+ D + +++ +
Sbjct: 301 EDAAIHFLRNYEGLWMKWVP-------ADVAEKVKASL 331
>gi|154490976|ref|ZP_02030917.1| hypothetical protein PARMER_00893 [Parabacteroides merdae ATCC
43184]
gi|154088724|gb|EDN87768.1| hypothetical protein PARMER_00893 [Parabacteroides merdae ATCC
43184]
Length = 289
Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats.
Identities = 48/275 (17%), Positives = 105/275 (38%), Gaps = 9/275 (3%)
Query: 9 LFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTF 68
+ + ++ V W++ A + + V+LE GY ++ + F
Sbjct: 14 VAFMMMFADCSDSSNGRKQVSIGYVNWSEGIAMSYLAKVMLESK-GYDVMLRNADIAPVF 72
Query: 69 RSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSY 128
S+ +D+FM W P+ + +++ + + A+ L V I+S
Sbjct: 73 VSMAAGKVDVFMDAWLPATHADYIRKYGD-NLEALGVAYKNARMGLVVPSYV---TIRSI 128
Query: 129 QDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQR 188
+++ ++K++ +I GI+ G +I L L +S + +++
Sbjct: 129 EELNEHKEKFRNEIIGIDVGAGLMNETERVIREYPVEL---TLKPSSGATMVAFLQKSIE 185
Query: 189 NNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI 248
N V W PH + S ++ +L ++ G E + + + DK P + +N
Sbjct: 186 NKEWIVVTGWTPHWMFSRYDLKFLDDPQKQYGDAE-QIQIMATKGFSDKDPYAAAFFRNF 244
Query: 249 KFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDL 283
+E+M L+ + + L HP++
Sbjct: 245 SLDNDQLSELMDLVEAYPMHEEEGAKIWLSEHPEV 279
>gi|209550496|ref|YP_002282413.1| substrate-binding region of ABC-type glycine betaine transporter
[Rhizobium leguminosarum bv. trifolii WSM2304]
gi|209536252|gb|ACI56187.1| Substrate-binding region of ABC-type glycine betaine transport
system [Rhizobium leguminosarum bv. trifolii WSM2304]
Length = 333
Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats.
Identities = 50/340 (14%), Positives = 94/340 (27%), Gaps = 40/340 (11%)
Query: 1 MYKILAVCLFLTTFSISYA-RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M K+LA L + + A C V A A T + ILE G
Sbjct: 1 MKKLLASTCLLAGLAGGASLSHAAECGDVVLAVHNVQSAEALTFVDKFILENGYGCNVET 60
Query: 60 KLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVN 117
P T ++ D+ W L + + +EEG I A L G +
Sbjct: 61 VPGDTVPTTTSMVEKSQPDVSSETWVDLLPEIVPRGVEEGKIVFGAPALPDGGIQGWWIP 120
Query: 118 DVGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
+ + I+ G + K + KG
Sbjct: 121 KYLADAHPDIKTVEDALAHPDLFPDQEDSSKGVIFNGAEGWGATVVTTQLFKAYKAADKG 180
Query: 169 FRLI-EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHY---------------- 211
F L+ S I + + W P + +
Sbjct: 181 FTLMNPGSAAGLDGAIAKAYERKQGFITYYWAPTALLGKYEMVRLKQNGAPDAVEWKRCI 240
Query: 212 ---LPGGEEISGFGEASVYTVVRSDYLDKC-PNISRLLKNIKFSVALENEMMKLILNNKQ 267
+++ + V TVV + D+ P++ +S ++M N+
Sbjct: 241 TNLACPDPKVADWPVDKVMTVVTKKFADRTSPDVMAYFGKRGWSNDTVGKLMAWETENQA 300
Query: 268 DRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ + L+ + + W+ D + +++ +
Sbjct: 301 TGEDGAKHFLQENETIWSQWVP-------ADVAEKIKAAL 333
>gi|313500096|gb|ADR61462.1| Substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas putida BIRD-1]
Length = 286
Score = 171 bits (432), Expect = 2e-40, Method: Composition-based stats.
Identities = 54/289 (18%), Positives = 106/289 (36%), Gaps = 14/289 (4%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNI 59
M + L V L + A V W D ATT + + ++++ LGY +
Sbjct: 7 MRRFLGVGTALVMAMSTAQAMA---KEVSIGYVDGWADSVATTNVAAEVIKQKLGYDVKL 63
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ +A + ++ + +D + W P + ++ N + AK L V +
Sbjct: 64 QAVATGIMWQGVATGKLDAMLSAWLPVTHGEYW-AKNKDNVVDYGPNFKDAKIGLIVPEY 122
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
A+ I K +I GI+ G+ + I + ++L +S A
Sbjct: 123 VKAVSIADL----KTDNSFKDRIVGIDAGSGVMLKTDQAIKDYGL--TSYKLQASSGAAM 176
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+++ R W PH + + + +L + + G +V ++ + K P
Sbjct: 177 TAELGRAYAKQQSIAVTGWVPHWMFAKWKLKFLEDPKGVYG-AAETVNSIGSKELATKAP 235
Query: 240 NISRLLKNIKF-SVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
++ LK + S E+M I + + + HPD +K W
Sbjct: 236 EVAEFLKKFNWQSKDEIGEVMLAI-QEGAKPEAAAKDWVAKHPDRVKEW 283
>gi|92115284|ref|YP_575212.1| substrate-binding region of ABC-type glycine betaine transport
system [Chromohalobacter salexigens DSM 3043]
gi|91798374|gb|ABE60513.1| Substrate-binding region of ABC-type glycine betaine transport
system [Chromohalobacter salexigens DSM 3043]
Length = 284
Score = 171 bits (432), Expect = 2e-40, Method: Composition-based stats.
Identities = 54/290 (18%), Positives = 103/290 (35%), Gaps = 11/290 (3%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M + + + +S AD + W++ A + M +LE+ GY +
Sbjct: 1 MKPLTPLFVACGLAGLSMTASAD--DTLTIGTNNWSENIAVSHMWQQLLEKQ-GYDVELT 57
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
V F L +DI + W P+ + E I + GA+ L V
Sbjct: 58 TTGKSVLFSGLAQGDLDISLEVWLPNGDAQYIK-PYEDRIDVHDAWFDGAQDELVVPAYL 116
Query: 121 FALGIKSYQDIAK--YKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ S + + I GIE G+ + + I + L+ +S A
Sbjct: 117 EDINTISDLKDNAERFVYQGQPTIIGIESGSAISGETENAIESYDLPLRQLN---SSGPA 173
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+ + N P W+PH + ++ L ++ G G+ + + + ++
Sbjct: 174 MLAALEEAYANEEPIAVTLWQPHWAYAQYDLKALEDPKKSYGGGD-DIMWMSPKGFGERH 232
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
P ++ +L S A ++M I N D + + + DL+ WL
Sbjct: 233 PEVTEMLDTWHMSHAQLADLMLTIENVG-DPTQGAKQWIEENRDLIDEWL 281
>gi|260426974|ref|ZP_05780953.1| glycine betaine/proline ABC transporter, periplasmic glycine
betaine/proline-binding protein [Citreicella sp. SE45]
gi|260421466|gb|EEX14717.1| glycine betaine/proline ABC transporter, periplasmic glycine
betaine/proline-binding protein [Citreicella sp. SE45]
Length = 330
Score = 171 bits (432), Expect = 2e-40, Method: Composition-based stats.
Identities = 51/308 (16%), Positives = 94/308 (30%), Gaps = 23/308 (7%)
Query: 5 LAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
L L L S + A+D A C V A GW TT + +LE+ G +
Sbjct: 11 LVATLVLPLASQAQAQDDAGQCGEVSIAQMGWAAAEVTTNIAKFLLEQGYGCDVTLVQSD 70
Query: 64 V-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQ-GAKYMLAVNDVGF 121
P +N D+ W S + E G+I+ + L+ G +
Sbjct: 71 TIPAITSVAENGEPDVVTNLWLNSGGEAYTKLEEGGTIQRLTSVLEPGGVEGWWIPTSLA 130
Query: 122 A--LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR-LIEASELA 178
+K+ I + + +G++ G ++ G S
Sbjct: 131 EEHPELKTIDGILENPELVGSRFNNCPDGWGCRVVSDNLARALDLEGHGIEVFNHGSGET 190
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE-----------------ISGF 221
+ + P W P + + G +S F
Sbjct: 191 LATSMGAAVTGGEPWFGYYWGPTVPLGKYEMTKVDLGGYDEAAFTPLQNPDTPDPQVSDF 250
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHP 281
A + T V +++ ++ P ++ + F+ + ++ N + V L T
Sbjct: 251 PAAPILTSVTTEFAEENPEVTEFFTKMTFATDQMSGLLAWKDENNASNEEVAVYFLSTAS 310
Query: 282 DLLKNWLI 289
D NW+
Sbjct: 311 DTWTNWVS 318
>gi|182439684|ref|YP_001827403.1| putative glycine betaine ABC transporter substrate-binding and
permease component [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|178468200|dbj|BAG22720.1| putative glycine betaine ABC transporter substrate-binding and
permease component [Streptomyces griseus subsp. griseus
NBRC 13350]
Length = 873
Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats.
Identities = 55/308 (17%), Positives = 113/308 (36%), Gaps = 18/308 (5%)
Query: 4 ILAVCLFLTTFSISYARDAD---------SCTPVRFADTGWTDIAATTAMTSVILEEILG 54
I+ + L + S+ D V W + A+T + +LE+ G
Sbjct: 307 IVVLALVAGSMSMFGGSKDDTAGEAARIGDGKKVSIGYIPWDEGIASTFLWKEMLEQR-G 365
Query: 55 YKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
++ ++K + + N ID W P ++ ++ + L
Sbjct: 366 FEVDVKQYEAGALYTGMANGQIDFQTDSWLPVTHASYWAKYKD-RLEDLGAWYSPTSLEL 424
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
AV +++ D+ E +I GIEP + D + K ++LI+
Sbjct: 425 AVPAY--MKDVQTMDDLKGRASEFKGRIVGIEPSAGEMGLLKDKLLPGYGLDKEYKLIDG 482
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDY 234
S + ++++R P V W PH ++ ++ L + + G G+ V+++ R +
Sbjct: 483 STPSMLAELKRAYAKKEPIVVPLWSPHWAYNEYDLTKLKDPKGLWGKGDG-VHSLARKGF 541
Query: 235 LDKCPNISRLLKNIKFSVALENEMMKLILNNK-QDRQFVGRTMLRTHPDLLKNWL---IG 290
+ P +++ +K+ + S + I Q RT L+ +P + W
Sbjct: 542 SAENPEVAQWVKDFRMSEKQLTSLEAEIQKAGSGKEQEAVRTWLKDNPGVADKWTPVPKD 601
Query: 291 VTTFDGQD 298
G+D
Sbjct: 602 AKADGGKD 609
Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats.
Identities = 46/271 (16%), Positives = 104/271 (38%), Gaps = 6/271 (2%)
Query: 17 SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGI 76
+ + V A W + A T + +LEE GYK N+K V + ++ I
Sbjct: 604 ADGGKDERDRAVEVAWFPWEEDIAATYLWKAVLEER-GYKINLKQFEVGPMYAAMSRGQI 662
Query: 77 DIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKK 136
D+ W P +K + + + +AV D +K+ D+
Sbjct: 663 DVQFDGWLPYTQKNYWDKYGD-KLTDIGSWYGPTSIEVAVPDYV--KDVKTLDDLKGKGS 719
Query: 137 ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFL 196
+ +I GIEPG + + + + + ++++++S ++++R P L
Sbjct: 720 DFKGRIVGIEPGTATMENLKKNVLPSYGLDEEYKVLDSSTPGMLAELKRAYAKKEPIAVL 779
Query: 197 SWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALEN 256
W PH ++ + L ++ G G+ ++T+ ++ + P +++ K+ K +
Sbjct: 780 LWTPHWAYNEYGMTKLKDPKKAFGEGD-RLHTIASKEFPKQYPQLTKWFKDFKLTEEQLG 838
Query: 257 EMMKLILNNKQD-RQFVGRTMLRTHPDLLKN 286
+ I + + + +P +
Sbjct: 839 GLENEIQKRGAGHEEEAVKAWMDENPGIADT 869
>gi|188586658|ref|YP_001918203.1| Substrate-binding region of ABC-type glycine betaine transport
system [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179351345|gb|ACB85615.1| Substrate-binding region of ABC-type glycine betaine transport
system [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 341
Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats.
Identities = 65/339 (19%), Positives = 126/339 (37%), Gaps = 39/339 (11%)
Query: 1 MYK-ILAVCLFLTTFSISYARDADSCTPV--RFADTGWTDIAATTAMTSVILEEILG-YK 56
+ K + A+ + ++ D+++ V FAD GW I + +ILEE G Y+
Sbjct: 8 IKKCVFAILFGMLVLGVTGCADSEAQDEVELTFADAGWESIRVHNYIAGIILEEGYGGYR 67
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+I + PVTF L+ GIDI+M W ++++ LE+G I++++ N L V
Sbjct: 68 QDIMSGSTPVTFTDLRGGGIDIYMEVWKENIQEEYNEALEKGEIQVLSINFDDNFQGLYV 127
Query: 117 NDVGFA-----------LGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDM 158
++S D+ Y +E +I G ++ +
Sbjct: 128 PTYVIEGDEDRGIDPIAPNLESVFDLPDYWEEFQDPEDPDKGRIIGAPSEWAVDEILEIK 187
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE-- 216
+ + SE + I + P V +WEP I ++ L E
Sbjct: 188 VETYGLDEHFNYVSPGSESTLNATIMDAYESGEPVVAYNWEPTWIMGKYDMTLLEEPEFD 247
Query: 217 --------EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQD 268
+ V V SD ++ P + L+N + S + +E + D
Sbjct: 248 EEKYYEEGYGTEIPSMDVTVAVNSDLAEEHPEVVEFLENYETSSEVTSEALAYTEEADAD 307
Query: 269 RQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ + LR + ++ W+ ++ + + ++
Sbjct: 308 ERGAAKWFLREYEEIWTEWVN-------EEVAENVREYL 339
>gi|288573144|ref|ZP_06391501.1| Substrate-binding region of ABC-type glycine betaine transport
system [Dethiosulfovibrio peptidovorans DSM 11002]
gi|288568885|gb|EFC90442.1| Substrate-binding region of ABC-type glycine betaine transport
system [Dethiosulfovibrio peptidovorans DSM 11002]
Length = 341
Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats.
Identities = 49/336 (14%), Positives = 95/336 (28%), Gaps = 34/336 (10%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL 62
+ + L +S A ++ D W + + +LE L + +
Sbjct: 6 RYVIGFLAALMCFMSLPAMAAKVPTIKMGDFSWDSVQLHNRIVGFVLEHALDVEVEYEFA 65
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
+ +D W ++++ L EG + + A V
Sbjct: 66 ETMPILMGMSRGDVDATTEIWSDNIKESWEKLLNEGKVLDLGTTYPDAVQGWYVPTYVVE 125
Query: 123 -----------LGIKSYQDIAKYKKELGA---------KIYGIEPGNEGNQRILDMINNN 162
+K+ +D+ KYK + Y G +
Sbjct: 126 GDPERGIEPMAPDLKTVEDLKKYKDLFVPKAGGDKGKGRFYNGPTGWVTYTVNTVKLKAY 185
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG------- 215
S A + I P WEP P+ L++ L
Sbjct: 186 GLDEYYENFSAGSSAALATAIFSAYEKGEPVFAYYWEPTPLMGMLDMTMLEEPAYEHIKW 245
Query: 216 ---EEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
F + V+ V + ++KCP +L N + +++ N + + N +
Sbjct: 246 DEKTYDCAFPPSKVHIGVSTALIEKCPQAVTILANYESTLSQTNAALAYVEENNTSIEKG 305
Query: 273 GRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
L+ +PD KNW ++E +
Sbjct: 306 AIWFLKNYPDQWKNW----FPIANDSRIEKVEAALK 337
>gi|229590060|ref|YP_002872179.1| glycine betaine/L-proline ABC transporter substrate-binding
periplasmic protein [Pseudomonas fluorescens SBW25]
gi|229361926|emb|CAY48826.1| glycine betaine/L-proline ABC transporter, substrate-binding
periplasmic protein [Pseudomonas fluorescens SBW25]
Length = 338
Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats.
Identities = 54/343 (15%), Positives = 107/343 (31%), Gaps = 43/343 (12%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+ +LA L S++ + + P+ FAD W + T + VI+E+ T+
Sbjct: 4 LRTLLAASLTTLALSVTTLPVSAAQAPIHFADLNWESGSLITEVLRVIVEKGYDLPTDTL 63
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+L I + W EG + + + ++GA V +
Sbjct: 64 PGTTITLETALAKNDIQVIGEEWA-GRSPVWVKAEAEGKVVGLGDTVKGATEGWWVPEYV 122
Query: 121 FA-----------LGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNN 162
G+KS D+ YK + G +
Sbjct: 123 VKGDPAKGIKPLAPGLKSVTDLVHYKDVFKDPESPGKGRFLNSPIGWTSEVVNKQKLKAY 182
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLN-------------I 209
S A ++I R P +F W P P+
Sbjct: 183 GLDDSYVNFRSGSGAALDAEIASSIRRGKPVLFYYWSPTPLMGRYKLIQLEEPPFDAEAW 242
Query: 210 HYLPGGEEISGFG----EASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNN 265
L + + + V + + + P I+ + ++F + N+ + + N
Sbjct: 243 KTLTDADNPDPKPTRSLASKLSIGVSTPFQKEHPQIAEFFEKVEFPIEPLNKALATMSEN 302
Query: 266 KQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
+ V + L+ HP++ K WL +D ++++E +
Sbjct: 303 HTAPREVAQAFLKEHPEVWKAWLT-------EDVAQKVEASLK 338
>gi|302538374|ref|ZP_07290716.1| LOW QUALITY PROTEIN: glycine betaine ABC transport system permease
[Streptomyces sp. C]
gi|302447269|gb|EFL19085.1| LOW QUALITY PROTEIN: glycine betaine ABC transport system permease
[Streptomyces sp. C]
Length = 548
Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats.
Identities = 45/290 (15%), Positives = 102/290 (35%), Gaps = 15/290 (5%)
Query: 4 ILAVCLFLTTFSISYARDADS---------CTPVRFADTGWTDIAATTAMTSVILEEILG 54
++ + + + + + W + A+T + +LE G
Sbjct: 260 VVLALVAGGLSTFGGSGSPAAATGTENTGKGRKISIGYIPWDEGIASTFLWKELLERR-G 318
Query: 55 YKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
++ + + L + F L +D+ W P + + + L
Sbjct: 319 FEVDARQLELGALFTGLAGGQVDLQTDAWLPVTQAQYWEKYG-NELDDLGSWYGPTSIEL 377
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
+V ++S +D+ +I GIEP + + + +++++
Sbjct: 378 SVPSYV--KDVRSLEDLKGKGARFKRRIIGIEPSAGAMSVLKEKVLKEYGLEGEYQVVDG 435
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDY 234
S ++++R P V + W PH S + L + + G G+ ++T+ R +
Sbjct: 436 STPGMLAELKRAYEKKEPVVSVLWSPHWAYSTYELTKLADPKGVWGEGDG-IHTLARKGF 494
Query: 235 LDKCPNISRLLKNIKFSVALENEMMKLILNNKQ-DRQFVGRTMLRTHPDL 283
D P ++ L++ K + A + I + Q R L HP++
Sbjct: 495 ADDEPEVAAWLRSFKLTEAQLTGLEAKIQETGKGKEQQAVRAWLADHPEV 544
>gi|33593077|ref|NP_880721.1| putative periplasmic substrate-binding protein [Bordetella
pertussis Tohama I]
gi|33563452|emb|CAE42334.1| putative periplasmic substrate-binding protein [Bordetella
pertussis Tohama I]
gi|332382489|gb|AEE67336.1| putative periplasmic substrate-binding protein [Bordetella
pertussis CS]
Length = 333
Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats.
Identities = 52/324 (16%), Positives = 104/324 (32%), Gaps = 37/324 (11%)
Query: 13 TFSISYARDADSCT---PVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFR 69
+ A D C PV F W + I+E+ G KT +
Sbjct: 18 FSGAAQAADKPQCEVSRPVNFGGMNWESNLVLVDIERFIMEKGYGCKTEVLPTETLPALA 77
Query: 70 SLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA--LGIKS 127
+L+ +DI W S+ + G +K V E G V +KS
Sbjct: 78 ALERGDLDINTEIWLNSVADPWDRAQKTGKVKRVGELYMGG-EAWFVPRYTAERLPELKS 136
Query: 128 YQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
D+ K+K + YG G ++ + K + A
Sbjct: 137 AADLPKFKDRFKDPEEPGKGRFYGCPAGWGCEVTSTNLFHALKLGDSYTLYSPGTGAAQK 196
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI-----------------SGFGE 223
+ + + VF W P P+ +++ L S + E
Sbjct: 197 AALMSAYKRKQDVVFYYWYPTPLVGSMDLVKLELPPYDAEKHKCLTAPKCSDPQPSAYPE 256
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDL 283
V+T V + + ++ P ++ L + + + ++ + + + + V + L+ D+
Sbjct: 257 NPVFTAVNTRFSEEAPKLTEFLSKVAVPLPVMDQTLAHMEESGDESGAVAQWFLKNQADV 316
Query: 284 LKNWLIGVTTFDGQDPSRQLERFM 307
K W+ D + +++ +
Sbjct: 317 WKKWVP-------ADVAERVQTAL 333
>gi|254229402|ref|ZP_04922818.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein, putative [Vibrio sp. Ex25]
gi|151938093|gb|EDN56935.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein, putative [Vibrio sp. Ex25]
Length = 340
Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats.
Identities = 50/319 (15%), Positives = 104/319 (32%), Gaps = 38/319 (11%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVT-FRSLKNKGIDI 78
+AD C + AD W + + +L E + T ++ D+
Sbjct: 29 ANADECGKITIADMNWNSASLMAHIDQFVLNEGYQCDAELIPGDSVPTGTSMIEKGQPDV 88
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVNDVGFALG---------IKSY 128
W +++ + + + +++ E+L G + V IK
Sbjct: 89 APELWTNGIKEALDKGIADKRLRIAGESLVNGGEEGFWVPAYLVKQYPELATIEGVIKHA 148
Query: 129 QDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI-EASELASFSQIRRDQ 187
+ + + Y G + N S GF ++ S A I +
Sbjct: 149 KLFEHPEDDDKFAFYSCPAGWTCQITSGHLFNALGLSEHGFEMVDPGSGAALAGTIAKAY 208
Query: 188 RNNIPAVFLSWEPHPINSDLNIHYLPGG-------------------EEISGFGEASVYT 228
+P W P P+ ++ + G +++ + + V T
Sbjct: 209 DRKMPWFGYYWSPTPVLGKYDMVKVDFGSGTDLEEYRNCTTQPDCASPKVTMYPPSPVRT 268
Query: 229 VVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
V + +K P L+ F+ +EM+ + +N D + T+PDL K W+
Sbjct: 269 VTTEAFANKEPQAFAYLQKRGFTNEQMSEMLAWMEDNYADGEEAMFYFFNTYPDLWKGWV 328
Query: 289 IGVTTFDGQDPSRQLERFM 307
+D + ++E+ +
Sbjct: 329 S-------EDVAMKIEKAL 340
>gi|87118392|ref|ZP_01074291.1| hypothetical ABC transporter, substrate binding protein
[Marinomonas sp. MED121]
gi|86166026|gb|EAQ67292.1| hypothetical ABC transporter, substrate binding protein
[Marinomonas sp. MED121]
Length = 326
Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats.
Identities = 47/312 (15%), Positives = 96/312 (30%), Gaps = 31/312 (9%)
Query: 8 CLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVT 67
LF IS A C V AD W + + IL + + T
Sbjct: 3 LLFTFVLLISSTVQAQECGRVSIADMNWNSASLMAHIDQYILNHGYDCEAELIPGDSIPT 62
Query: 68 FRSLKN-KGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVNDVGFA--L 123
S+ N DI +W ++ ++ ++E ++ L QG + V +
Sbjct: 63 ITSMYNKGQPDIAPEFWTNGSKELLSKGMKEKRLRQAGPALSQGGEEGFWVPEYLLEQYP 122
Query: 124 GIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNNKFSLKGFR-LIEAS 175
I + I ++ Y G ++ N + GF + S
Sbjct: 123 NINTLAGIKEHADIFTHPEDPELSAFYSCPAGWVCQITSENLFNALNLADAGFEAVDPGS 182
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG-------------------E 216
I + P W P + + + G
Sbjct: 183 AAGLSGSIAKAYSRKEPWFGYYWSPTEVLGKYEMVKVDFGTGVDLKEYQTCTTQPDCLNP 242
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
+ + + + V ++ + + P+ + F+ ++M+ + +N+ + +
Sbjct: 243 KATMYPASPVLSITTESFAVEAPSAYEYISTRSFTNQQMSKMLAWMEDNQANGEEAMYYF 302
Query: 277 LRTHPDLLKNWL 288
L T+P+L + WL
Sbjct: 303 LETYPELWQAWL 314
>gi|295397941|ref|ZP_06807998.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Aerococcus viridans ATCC
11563]
gi|294973826|gb|EFG49596.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Aerococcus viridans ATCC
11563]
Length = 301
Score = 170 bits (429), Expect = 3e-40, Method: Composition-based stats.
Identities = 62/308 (20%), Positives = 112/308 (36%), Gaps = 29/308 (9%)
Query: 1 MYK--------ILAVCLFLTTFSISYA-----------RDADSCTPVRFADTGWTDIAAT 41
M K ++ V + TF + A + S + + W A+
Sbjct: 1 MKKKLKGIWIAVITVLGLILTFGSAGAYSSNTFNLLSVGSSGSKGNINLSYVTWDTEIAS 60
Query: 42 TAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIK 101
T + + +L + GY L + + S+ + D +G W P+ + ++
Sbjct: 61 TNVIAEVLRQA-GYTVETTPLDNAIMWSSVASAEADAMVGAWLPNTHAPQYEQYGD-QME 118
Query: 102 LVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINN 161
+ NL+GA L V I + I GIEPG + ++
Sbjct: 119 DLGPNLEGAITGLTVPTYMED-----VNSIEDLSDQANQTITGIEPGAGVVAAAENAVDT 173
Query: 162 NKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
+L + + +S A +++ N V W PH + ++ YL E I G
Sbjct: 174 YS-NLSDWTVQTSSSGAMTTELGTSIANEEEIVITGWSPHWMFQKYDLKYLEDTEGIFGN 232
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHP 281
GE ++ T+VR D P ++L N + V +M I N+ D Q + + +
Sbjct: 233 GE-TINTMVRLGLQDDMPEAYQILDNFFWEVEDMESVMAEI-NDGADPQTAAQAWIEENQ 290
Query: 282 DLLKNWLI 289
+ + WL
Sbjct: 291 ETVNQWLA 298
>gi|317401948|gb|EFV82551.1| glycine betaine-binding periplasmic protein [Achromobacter
xylosoxidans C54]
Length = 336
Score = 170 bits (429), Expect = 3e-40, Method: Composition-based stats.
Identities = 45/310 (14%), Positives = 95/310 (30%), Gaps = 34/310 (10%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWY 84
PVRF+ W + ++E G KT++++ +L+ +D+ W
Sbjct: 33 DRPVRFSGLNWESNLVLAGIERYVMEHGYGCKTSVEIGETLPMLAALQRGDVDVTPEVWP 92
Query: 85 PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG---------FALGIKSYQDIAKYK 135
+E L G ++ + A V A + Q A +
Sbjct: 93 GQIEVAWKKALASGRVQGLGHVY-DAGEGWYVPRYTVQRHPDLKSAADLARFKQVFADPE 151
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
+IYG G +++ S A + I + VF
Sbjct: 152 DPGRGRIYGCPAGWACGTLNDNLLRALGLDRDYSLFAPGSGAAQKAAILSAYKRKRDIVF 211
Query: 196 LSWEPHPINSDLNIHYLPGG-----------------EEISGFGEASVYTVVRSDYLDKC 238
W P + L++ L + F V T V S + +
Sbjct: 212 YYWTPTALVGALDLVKLELPAFDQTAYTCLTDPKCAKPVATEFKPNPVVTGVNSAFAKEA 271
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
P ++ L + + + + N ++ + R L+ + + + W+ D
Sbjct: 272 PQLAAFLAKLTIPSDAIDATLGWLENEGKEPEEAARYFLKRYGPVWRQWMP-------AD 324
Query: 299 PSRQLERFMN 308
+ +++ ++
Sbjct: 325 AAERVQAALD 334
>gi|33596371|ref|NP_884014.1| putative periplasmic substrate-binding protein [Bordetella
parapertussis 12822]
gi|33566140|emb|CAE37041.1| putative periplasmic substrate-binding protein [Bordetella
parapertussis]
Length = 336
Score = 170 bits (429), Expect = 3e-40, Method: Composition-based stats.
Identities = 52/324 (16%), Positives = 104/324 (32%), Gaps = 37/324 (11%)
Query: 13 TFSISYARDADSCT---PVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFR 69
+ A D C PV F W + I+E+ G KT +
Sbjct: 21 FSGAAQAADQPQCEVSRPVNFGGMNWESNLVLVDIERFIMEKGYGCKTEVLPTETLPALA 80
Query: 70 SLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA--LGIKS 127
+L+ +DI W S+ + G +K V E G V +KS
Sbjct: 81 ALERGDLDINTEIWLNSVADPWDRAQKTGKVKRVGELYMGG-EAWFVPRYTAERLPELKS 139
Query: 128 YQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
D+ K+K + YG G ++ + K + A
Sbjct: 140 AADLPKFKDRFKDPEEPGKGRFYGCPAGWGCEVTSTNLFHALKLDDSYTLYSPGTGAAQK 199
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI-----------------SGFGE 223
+ + + VF W P P+ +++ L S + E
Sbjct: 200 AALMSAYKRKQDVVFYYWYPTPLVGSMDLVKLELPPYDAEKHKCLTAPKCSDPQPSAYPE 259
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDL 283
V+T V + + ++ P ++ L + + + ++ + + + + V + L+ D+
Sbjct: 260 NPVFTAVNTRFSEEAPKLTEFLSKVAVPLPVMDQTLAHMEESGDESGAVAQWFLKNQADV 319
Query: 284 LKNWLIGVTTFDGQDPSRQLERFM 307
K W+ D + +++ +
Sbjct: 320 WKKWVP-------ADVAERVQTAL 336
>gi|328881264|emb|CCA54503.1| Glycine betaine ABC transport system, permease or glycine
betaine-binding protein OpuABC [Streptomyces venezuelae
ATCC 10712]
Length = 603
Score = 170 bits (429), Expect = 3e-40, Method: Composition-based stats.
Identities = 49/276 (17%), Positives = 97/276 (35%), Gaps = 6/276 (2%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSL 71
+ + + + + W + A+T + +LE GY+ K L + L
Sbjct: 329 ASSTTASGPNGGHGKKISIGYIPWDEGIASTFLWKELLERR-GYEVETKQLEAGALYTGL 387
Query: 72 KNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDI 131
+D W P + + ++ + L+V G+ S D+
Sbjct: 388 AGGQLDFQTDSWLPVTHEQYWKKY-QNKLEDLGSWYGPTSLELSVPSYV--KGVDSLADL 444
Query: 132 AKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI 191
+ +I GIEP + D + + +++ S ++++R
Sbjct: 445 KGKAGQFKGRIVGIEPSAGMMGILKDKVLKEYGLEGEYEVVDGSTPGMLAELKRSYERKE 504
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFS 251
P V W PH S ++ L + G G+ V+T+ R + + P + LKN + +
Sbjct: 505 PVVVTLWSPHWAYSTHDLKKLADPKGSWGKGDG-VHTLARKGFAAENPEVGSWLKNFELT 563
Query: 252 VALENEMMKLILNNKQ-DRQFVGRTMLRTHPDLLKN 286
++ +I + Q RT L P L +
Sbjct: 564 EKQLTDLEAVIQKTGKGKEQEAVRTWLDNSPGLAEK 599
>gi|294101049|ref|YP_003552907.1| Substrate-binding region of ABC-type glycine betaine transport
system [Aminobacterium colombiense DSM 12261]
gi|293616029|gb|ADE56183.1| Substrate-binding region of ABC-type glycine betaine transport
system [Aminobacterium colombiense DSM 12261]
Length = 340
Score = 170 bits (429), Expect = 3e-40, Method: Composition-based stats.
Identities = 44/334 (13%), Positives = 103/334 (30%), Gaps = 33/334 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+ K + + L + A A++ P+ F D W + + I+ G +
Sbjct: 6 LKKQIIITLCALSTMFLGAIAAEAARPITFIDFSWDSVQVHNRIAGYIIVHGYGKNVDYM 65
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
++ DI M W ++ ++ ++G++ + N A V
Sbjct: 66 FAESLPGLMGIERGDADISMELWADNVHEWWEEAQKKGNVTSLGMNFPDAPQGWYVPRYM 125
Query: 121 FA-----------LGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNN 162
+KS D+ KY + ++Y G + + + +
Sbjct: 126 VEGDAERGIEATAPDLKSVYDLPKYWELFKDPEEPNKGRLYNGPAGWKVSSINTEKVIAY 185
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI---- 218
+ S+ + + I P + WEP + N+ L
Sbjct: 186 RLDKNYTAFDPGSQTSLATAIASAYERGKPVLAYYWEPTEVMGMYNMVKLEEPPYKKDIW 245
Query: 219 -----SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVG 273
F V + + + + P I+ + K ++ N+ + + D +
Sbjct: 246 ETTRGCDFPSVKVLIIANTKFARENPEITEVFKKYTTTLEQNNKTLAYMKTRVVDAEQAA 305
Query: 274 RTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
L+ + + K W+ + ++E+ +
Sbjct: 306 VWFLKNYSEEWKGWIED------ESVIAKIEKAL 333
>gi|262277474|ref|ZP_06055267.1| ABC transporter, substrate binding protein [alpha proteobacterium
HIMB114]
gi|262224577|gb|EEY75036.1| ABC transporter, substrate binding protein [alpha proteobacterium
HIMB114]
Length = 336
Score = 170 bits (429), Expect = 4e-40, Method: Composition-based stats.
Identities = 52/343 (15%), Positives = 101/343 (29%), Gaps = 43/343 (12%)
Query: 1 MYKILAVCLFLTTFSISYARDA-DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M KIL V + +S ++ +C V+ A+ W + ++LE+ G +
Sbjct: 1 MKKILTVLIGAWFLLLSNTGESNAACKNVKIANMNWASAGLMANIDKIVLEKGFGCNVEL 60
Query: 60 KLLAVPVTFR-SLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAEN-LQGAKYMLAVN 117
F + DI W S + ++EG + + + + G V
Sbjct: 61 IQADTVPAFTSMNEKGSPDIVPELWANSFITPLNKAIKEGRLHRLNKGPITGLGEGWWVT 120
Query: 118 DV--GFALGIKSYQDIAKYKKELGAK-------IYGIEPGNEGNQRILDMINNNKFSLKG 168
IK+ D+ K G ++ + KG
Sbjct: 121 PAFRKKHPEIKTVMDLLKRPDLFPHPEDKSKGGFVTCPAGWACQLSNANLFRAFEMEKKG 180
Query: 169 FRLI-EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPG------------- 214
++LI S I + V W P + N+ L
Sbjct: 181 WKLIDPGSAAGLDGTIAKAAERGQNWVGYYWAPTAMIGKYNLVKLDWGIPFAGKENWDGC 240
Query: 215 ---GEEISGFGEAS------VYTVVRSDYLDKC-PNISRLLKNIKFSVALENEMMKLILN 264
E+ + + V TVV + N+ + + + N M+ +
Sbjct: 241 IAKPEKDCANPKPTAWITPAVNTVVTDKFRKNADKNLITYFEKRTYPGKVMNGMLVYMTE 300
Query: 265 NKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
N+ D + H + WL D + ++++ +
Sbjct: 301 NQADGSDAAIEFFKKHETVWTKWLP-------TDVANKIKKSL 336
>gi|289676940|ref|ZP_06497830.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. syringae FF5]
Length = 356
Score = 170 bits (429), Expect = 4e-40, Method: Composition-based stats.
Identities = 55/345 (15%), Positives = 110/345 (31%), Gaps = 46/345 (13%)
Query: 1 MY---KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M ++L L A A+ P++F W + T + I+E+ GY T
Sbjct: 20 MKSITRLLGCSLLALGLLGQTATAAEKTKPIQFGALTWESGSLITEVLRTIVEKGYGYPT 79
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+ + +L I + W EEG + + ++GA V
Sbjct: 80 DTLPGSTVSLETALAKNDIQVIAEEW-TGRSPVWVKAEEEGKVLGLGNIVKGATEGWWVP 138
Query: 118 DVGFA-----------LGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMI 159
+ +KS D+A+YK + G +
Sbjct: 139 EYVIKGDAAKGIKPLAPDLKSVADLARYKDVFEDPESPDKGRFLNSPSGWTSEIVNTQKL 198
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG-EEI 218
+ S A +++ R P +F W P P+ + L +
Sbjct: 199 KAYGLADSFVNFRTGSGAALDAEVASSIRRGKPVLFYYWSPTPLLGKYKLIKLDEPAFDA 258
Query: 219 SGFG----------------EASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI 262
+ A++ V +++ + P + + K + F + L N+ + +
Sbjct: 259 EAWKTLTDASNPNPRGTSSLAATLSIGVSAEFSKQYPELVSVFKGVDFPIDLLNKTLGEM 318
Query: 263 LNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ +D + V L+ +PD+ K WL D + ++ +
Sbjct: 319 SDKHEDAKVVAARFLKQNPDIWKAWLP-------ADVAERVSSSL 356
>gi|116254540|ref|YP_770376.1| putative substrate binding glycine betaine/L-proline ABC
transporter [Rhizobium leguminosarum bv. viciae 3841]
gi|115259188|emb|CAK10306.1| putative substrate binding glycine betaine/L-proline ABC
transporter [Rhizobium leguminosarum bv. viciae 3841]
Length = 290
Score = 170 bits (429), Expect = 4e-40, Method: Composition-based stats.
Identities = 57/277 (20%), Positives = 102/277 (36%), Gaps = 8/277 (2%)
Query: 14 FSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKN 73
A A PV+ W+D T + + ++E L K + V ++ +
Sbjct: 16 VGTVTATMAADAKPVKIGWAAWSDAEFVTKLAARLIETKLNQKVELVQADVAPLYQGVGR 75
Query: 74 KGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAK 133
+D M W P + + ++ + GAK V D A I S +D+ K
Sbjct: 76 GDLDAMMMAWLPQTHADYYAKV-KEKVETLGTVYDGAKLGWVVPDYIPADQIGSIEDLKK 134
Query: 134 Y--KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI 191
+K+L I GI+PG + + ++L +SE + + R R
Sbjct: 135 EDVQKKLSGTIQGIDPGAGLTRLSEKAEKDYGLG--SYKLQISSEAGMLTTVDRAVRGEK 192
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFS 251
V +W PH + + YL ++ G E V + R D+ + P ++ L +K
Sbjct: 193 WFVATAWSPHWMFGKHQLRYLDDPKKSLGEAE-HVDILARKDFKSEYPKVADFLSRMKLP 251
Query: 252 VALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+ M + + HPD +K+W+
Sbjct: 252 IPDLEAAMF--TAQQSSYDQAVDKYIADHPDQVKSWI 286
>gi|218261440|ref|ZP_03476255.1| hypothetical protein PRABACTJOHN_01921 [Parabacteroides johnsonii
DSM 18315]
gi|218224015|gb|EEC96665.1| hypothetical protein PRABACTJOHN_01921 [Parabacteroides johnsonii
DSM 18315]
Length = 289
Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats.
Identities = 48/275 (17%), Positives = 104/275 (37%), Gaps = 9/275 (3%)
Query: 9 LFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTF 68
+ + + V W++ A + + V+LE GY ++ + F
Sbjct: 14 VAFMMMFADCSNSSKDRKQVSIGYVNWSEGIAMSYLAKVMLESK-GYDVMLRNADIAPVF 72
Query: 69 RSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSY 128
S+ +D+FM W P+ + +++ + + A+ L V I+S
Sbjct: 73 VSMAAGKVDVFMDAWLPATHADYIRKYGD-NLEALGVAYKNARMGLVVPSYV---TIRSI 128
Query: 129 QDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQR 188
+++ ++K++ +I GI+ G +I L L +S + +++
Sbjct: 129 EELNEHKEKFRNEIIGIDVGAGLMNETERVIREYPVEL---TLKPSSGATMVAFLQKSIE 185
Query: 189 NNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI 248
N V W PH + S ++ +L ++ G E + + + DK P + +N
Sbjct: 186 NKEWIVVTGWTPHWMFSRYDLKFLDDPQKQYGDAE-HIQIMATKGFSDKDPYAAAFFRNF 244
Query: 249 KFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDL 283
+E+M L+ + + L HP++
Sbjct: 245 ALDNDQLSELMDLVEAYPMHEEEGAKIWLSEHPEV 279
>gi|218890571|ref|YP_002439435.1| putative glycine betaine-binding protein precursor [Pseudomonas
aeruginosa LESB58]
gi|254241923|ref|ZP_04935245.1| hypothetical protein PA2G_02645 [Pseudomonas aeruginosa 2192]
gi|126195301|gb|EAZ59364.1| hypothetical protein PA2G_02645 [Pseudomonas aeruginosa 2192]
gi|218770794|emb|CAW26559.1| probable glycine betaine-binding protein precursor [Pseudomonas
aeruginosa LESB58]
Length = 285
Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats.
Identities = 52/290 (17%), Positives = 109/290 (37%), Gaps = 11/290 (3%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNI 59
M ++L L + A + W+D ATT + + ++ E LGY+ +
Sbjct: 4 MRRLLCWSAGLAMSAAVGMAAAADKPVITIGYVDGWSDSVATTHVAAEVIREKLGYEVKL 63
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+A + ++ + +D + W P +++ + +A N A+ L V +
Sbjct: 64 MPVAAGIMWQGVARGKLDAMLSAWLPGTHGAYYEKMKD-KVVNLAINYPDARIGLIVPEY 122
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
A I + K G ++ GI+ G + + I ++L+ +S
Sbjct: 123 VSANSIAD---LQAQKDAFGGRVVGIDAGAGVMIKTDEAIKQYGLD---YKLVASSGSGM 176
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+++ R + P V W PH + + + +L +++ G E V TV K
Sbjct: 177 IAELTRAENEKKPVVVTGWIPHWMFAKWKLKFLDDPKKVYGDTE-HVDTVANPALEAKAK 235
Query: 240 NISRLLKNIKF-SVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+ LK + ++M I + + + +P +K+W+
Sbjct: 236 PVWEFLKKFGWRDGNEVGQVMLAI-QEGAKPEDAAKQWVAANPGRVKDWV 284
>gi|289522753|ref|ZP_06439607.1| putative ABC transporter, periplasmic substrate-binding protein
[Anaerobaculum hydrogeniformans ATCC BAA-1850]
gi|289504589|gb|EFD25753.1| putative ABC transporter, periplasmic substrate-binding protein
[Anaerobaculum hydrogeniformans ATCC BAA-1850]
Length = 336
Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats.
Identities = 52/319 (16%), Positives = 95/319 (29%), Gaps = 31/319 (9%)
Query: 1 MYKILAV-CLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M K+ A+ C V F D W+ + + +LE GYK N
Sbjct: 1 MRKLFALFCAVSIAVFCIAGSAPAKDKTVTFVDFSWSSVQMHNRIAGFVLEHGYGYKPNY 60
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL-EEGSIKLVAENLQGAKYMLAVND 118
L +DI M W ++ + + ++ + + + V
Sbjct: 61 IFAETVPGLTGLARGDVDIAMEMWIDNVLDWYNEAVGKDKKVIDLGPVFPDSPQGWYVPT 120
Query: 119 VGFA-----------LGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMIN 160
++S D+ KY + + Y PG + L +
Sbjct: 121 FVIEGDEERGIEPMAPDLRSVYDLPKYWELFKDPEKPNKGRFYNAIPGWVVHDINLKKLE 180
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE--- 217
+ S+ + + I P + WEP I LN+ L
Sbjct: 181 AYGLTETFEPFGPGSQTSLATAIVTAYNKGQPVLAYYWEPEWIMGMLNMTRLEEPPYDPK 240
Query: 218 --------ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDR 269
F A V+ + +D+L I L N + ++ N + + N +
Sbjct: 241 KWNDEAGYACEFPAARVHIGINADFLKNNTEILSFLANYETTLEQNNAALAYMQQNNANV 300
Query: 270 QFVGRTMLRTHPDLLKNWL 288
+ L+ + DL W+
Sbjct: 301 ETTAVWFLKEYKDLWTKWI 319
>gi|209520861|ref|ZP_03269603.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia sp. H160]
gi|209498708|gb|EDZ98821.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia sp. H160]
Length = 293
Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats.
Identities = 62/292 (21%), Positives = 103/292 (35%), Gaps = 8/292 (2%)
Query: 1 MYKILAVCLFLTTFSIS-YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+ ++A T ++ A A + P++ A T W D+ A + +LE L
Sbjct: 6 LKSLMAKVAISTVVAMGVGAGSAVAAEPIKMAVTNWADVLAVANVAKYVLENKLQQPVKF 65
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ + ++ + +DI +G W P + + V G K AV
Sbjct: 66 VQADIGIQYQGVARGDLDIMVGGWLPVTHAAYYAKY-KNDMDDVGIIYTGGKNGWAVPAY 124
Query: 120 GFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
+ S D+ K L I GIEPG Q I + G+ L +SE
Sbjct: 125 VPESELSSISDLNKPNVKAMLNGTIDGIEPGGGLMQASEKTIKGYDLN--GYNLQSSSEA 182
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDK 237
+ + R ++ V W PH + + YL + G GE V+ +
Sbjct: 183 GMLAGVSRAYQSKQWVVATVWSPHWLFQKWQMRYLKDPKGTLG-GEEQVHAFASKQFASS 241
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
P K+ K ++A + N D + + HPD +K WL
Sbjct: 242 FPRADVFFKHFKLTLADVESIEYD-GNATNDYASAAKKFVDAHPDKVKAWLE 292
>gi|150390570|ref|YP_001320619.1| substrate-binding region of ABC-type glycine betaine transport
system [Alkaliphilus metalliredigens QYMF]
gi|149950432|gb|ABR48960.1| Substrate-binding region of ABC-type glycine betaine transport
system [Alkaliphilus metalliredigens QYMF]
Length = 289
Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats.
Identities = 50/268 (18%), Positives = 96/268 (35%), Gaps = 11/268 (4%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFM 80
A+ V W A+T + V+LE+ LGY ++ ++ + ++ + D+
Sbjct: 32 AAEEMGSVTLGYVSWDSEIASTNVLKVVLED-LGYDVDMMDVSAALLYQGVAEGDFDLTT 90
Query: 81 GYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGA 140
W P+ + + NL G + L V I+ + G
Sbjct: 91 AAWLPTTHGDYINQYGA-GLDDLGPNLNGTRIGLVVPSFMDIDSIEDL----ATGEYAGT 145
Query: 141 KIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEP 200
+I GI+PG Q I+ + L+E S+ A + + + + W P
Sbjct: 146 QITGIDPGAGIMQATEAAIDEYGLD---YELLEGSDAAMAAALNDAISYDEEVIVTGWTP 202
Query: 201 HPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMK 260
H + ++ YL I G + ++T+ R D P + + N ++ +M
Sbjct: 203 HWKFASYDLKYLEDPLGIYGS-DEDIHTLARVGLEDDMPEVYAVASNFHWTPDDMAGVMV 261
Query: 261 LILNNKQDRQFVGRTMLRTHPDLLKNWL 288
I + R + + D + WL
Sbjct: 262 AIS-EGMGAEEAARQWVSENQDTVNGWL 288
>gi|262396862|ref|YP_003288715.1| putative periplasmic substrate-binding protein [Vibrio sp. Ex25]
gi|262340456|gb|ACY54250.1| putative periplasmic substrate-binding protein [Vibrio sp. Ex25]
Length = 331
Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats.
Identities = 50/319 (15%), Positives = 104/319 (32%), Gaps = 38/319 (11%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVT-FRSLKNKGIDI 78
+AD C + AD W + + +L E + T ++ D+
Sbjct: 20 ANADECGKITIADMNWNSASLMAHIDQFVLNEGYQCDAELIPGDSVPTGTSMIEKGQPDV 79
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVNDVGFALG---------IKSY 128
W +++ + + + +++ E+L G + V IK
Sbjct: 80 APELWTNGIKEALDKGIADKRLRIAGESLVNGGEEGFWVPAYLVKQYPELATIEGVIKHA 139
Query: 129 QDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI-EASELASFSQIRRDQ 187
+ + + Y G + N S GF ++ S A I +
Sbjct: 140 KLFEHPEDDDKFAFYSCPAGWTCQITSGHLFNALGLSEHGFEMVDPGSGAALAGTIAKAY 199
Query: 188 RNNIPAVFLSWEPHPINSDLNIHYLPGG-------------------EEISGFGEASVYT 228
+P W P P+ ++ + G +++ + + V T
Sbjct: 200 DRKMPWFGYYWSPTPVLGKYDMVKVDFGSGTDLEEYRNCTTQPDCASPKVTMYPPSPVRT 259
Query: 229 VVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
V + +K P L+ F+ +EM+ + +N D + T+PDL K W+
Sbjct: 260 VTTEAFANKEPQAFAYLQKRGFTNEQMSEMLAWMEDNYADGEEAMFYFFNTYPDLWKGWV 319
Query: 289 IGVTTFDGQDPSRQLERFM 307
+D + ++E+ +
Sbjct: 320 S-------EDVAMKIEKAL 331
>gi|227822370|ref|YP_002826342.1| putative substrate-binding component of ABC transporter
[Sinorhizobium fredii NGR234]
gi|227341371|gb|ACP25589.1| putative substrate-binding component of ABC transporter
[Sinorhizobium fredii NGR234]
Length = 332
Score = 169 bits (428), Expect = 5e-40, Method: Composition-based stats.
Identities = 54/339 (15%), Positives = 101/339 (29%), Gaps = 39/339 (11%)
Query: 1 MYKILAVCLFLTTF-SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M K+LA+ ++ A C V A+ W + ILE G ++
Sbjct: 1 MTKLLAITFAAAGIYVLASPTQAAECGKVSIAEMNWASAGIAAHVDKFILEHGYGCTVSL 60
Query: 60 KLLAVPVTF-RSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVN 117
TF + D+ W S+ + ++EG + A L +G +
Sbjct: 61 VAGDTMTTFASMNEKAEPDLAPELWIHSVRTPLEAAIKEGRLIQAAPILSEGGVEGWWIP 120
Query: 118 DVGF--ALGIKSYQDIAKYKKELGAK-------IYGIEPGNEGNQRILDMINNNKFSLKG 168
IK+ Q+ K+ A I+ G ++ G
Sbjct: 121 RFLANAHPEIKTVQEALKHPDLFPATDDPTKGAIHSCPSGWNCQISTANLYKALGAEKAG 180
Query: 169 FRLI-EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISG------- 220
FRL+ S A I + W P I + L G +
Sbjct: 181 FRLVEPGSATALDGSIAEAFETKTGWLGYYWAPTAILGKYEMIRLSFGVDHDRAEWDSCS 240
Query: 221 ------------FGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQD 268
+ + V+TVV + +K + + A N+++ + N+
Sbjct: 241 AVPNCSNPKINSYPVSDVFTVVTKSFSEKAGVAMDYVNARGWDNATVNKILAWMDQNRAR 300
Query: 269 RQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
R L P++ W+ + + ++ +
Sbjct: 301 NADAARYFLERFPEIWAKWVS-------PEVAEKVRAAL 332
>gi|221369070|ref|YP_002520166.1| Substrate-binding region of ABC-type glycine betaine transport
system precursor [Rhodobacter sphaeroides KD131]
gi|221162122|gb|ACM03093.1| Substrate-binding region of ABC-type glycine betaine transport
system precursor [Rhodobacter sphaeroides KD131]
Length = 333
Score = 169 bits (428), Expect = 5e-40, Method: Composition-based stats.
Identities = 47/321 (14%), Positives = 94/321 (29%), Gaps = 33/321 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDA--DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K LA +F A + C + A+ W + +ILEE G
Sbjct: 1 MTKRLASGCLAVSFVALAAPAWAAEDCGRISIAEMNWASAGVAAQVDKIILEEGFGCTVE 60
Query: 59 IKLLAVPVTFR-SLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAV 116
+ TF + D+ W ++ + +EEG + + A+ L G +
Sbjct: 61 LVAGDTMPTFTSMNEKGEPDMAPELWVNAVRTPLEAAVEEGRMVVAAQILKDGGVEGWWI 120
Query: 117 NDVGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
++ + ++ G ++
Sbjct: 121 PRYLAEAHPEIDSVEKALEHPDLFPAPEDASRGAVHNCPSGWNCQVSTENLFRALGAEDH 180
Query: 168 GFRLIE-ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIH---------------- 210
GF L++ S I + W P I ++
Sbjct: 181 GFDLVDTGSAAGLDGSIANAYEREAGWLGYYWAPTAILGKYDMVRLPFSVPHDKAAWDAC 240
Query: 211 ---YLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQ 267
E++ + + V+T V + +K +K +S +++ + ++
Sbjct: 241 TAVPDCADPEVNSYPVSEVFTAVTPSFAEKAGVAMDYVKARSWSNETVGQLLAWMDESQA 300
Query: 268 DRQFVGRTMLRTHPDLLKNWL 288
+ L T+PDL + WL
Sbjct: 301 TNEDAAYHFLETYPDLWRAWL 321
>gi|77459541|ref|YP_349048.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas fluorescens Pf0-1]
gi|77383544|gb|ABA75057.1| glycine betaine/L-proline ABC transporter, substrate-binding
periplasmic protein [Pseudomonas fluorescens Pf0-1]
Length = 337
Score = 169 bits (427), Expect = 6e-40, Method: Composition-based stats.
Identities = 50/341 (14%), Positives = 103/341 (30%), Gaps = 43/341 (12%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
++LA L + + TP+ FAD W + T + +I+E+ G T+
Sbjct: 5 RRLLAAGLTTFGLMTVMPAVSAAQTPIHFADLNWESGSLITDVLRIIVEKGYGLPTDTLP 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+L N I + W EG + + + ++GA V +
Sbjct: 65 GTTITLETALANNDIQVIGEEWA-GRSPVWVKAEAEGKVASLGDTVKGATEGWWVPEYVI 123
Query: 122 A-----------LGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNNK 163
++S D+ KYK + G +
Sbjct: 124 KGDPAKGIKPLAPDLRSVSDLKKYKDVFKDPETPSKGRFLNSPIGWTSEVVNKQKLTAYG 183
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLN-------------IH 210
S A ++I R P +F W P P+
Sbjct: 184 LQDDFVNFRSGSGAALDAEISSSIRRGKPVLFYYWSPTPLLGKFKLIQLEEPPFDAEAWK 243
Query: 211 YLPGGEEISGFG----EASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNK 266
L + + + + V + + + P I+ + F + N+ + +
Sbjct: 244 TLTDADNPNPKPTRSLASKLSIGVSTPFQKQHPEIAEFFSKVDFPIDDLNKALAEMSEKH 303
Query: 267 QDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ ++ HPD+ + WL +D +++++ +
Sbjct: 304 TAPRDAAVAFMKAHPDVWQAWLP-------KDVAQKVQAGL 337
>gi|15598432|ref|NP_251926.1| glycine betaine-binding protein precursor [Pseudomonas aeruginosa
PAO1]
gi|116051232|ref|YP_789937.1| putative glycine betaine-binding protein precursor [Pseudomonas
aeruginosa UCBPP-PA14]
gi|254236197|ref|ZP_04929520.1| hypothetical protein PACG_02163 [Pseudomonas aeruginosa C3719]
gi|9949358|gb|AAG06624.1|AE004746_8 probable glycine betaine-binding protein precursor [Pseudomonas
aeruginosa PAO1]
gi|115586453|gb|ABJ12468.1| putative glycine betaine-binding protein precursor [Pseudomonas
aeruginosa UCBPP-PA14]
gi|126168128|gb|EAZ53639.1| hypothetical protein PACG_02163 [Pseudomonas aeruginosa C3719]
Length = 285
Score = 169 bits (427), Expect = 6e-40, Method: Composition-based stats.
Identities = 52/290 (17%), Positives = 109/290 (37%), Gaps = 11/290 (3%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNI 59
M ++L L + A + W+D ATT + + ++ E LGY+ +
Sbjct: 4 MRRLLCWSAGLAMSAAVGMAAAADKPVITIGYVDGWSDSVATTHVAAEVIREKLGYEVKL 63
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+A + ++ + +D + W P +++ + +A N A+ L V +
Sbjct: 64 MPVAAGIMWQGVARGKLDAMLSAWLPGTHGAYYEKMKD-KVVNLAINYPDARIGLIVPEY 122
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
A I + K G ++ GI+ G + + I ++L+ +S
Sbjct: 123 VSANSIAD---LQAQKDAFGGRVVGIDAGAGVMIKTDEAIKQYGLD---YKLVASSGSGM 176
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+++ R + P V W PH + + + +L +++ G E V TV K
Sbjct: 177 IAELTRAENEKKPVVVTGWIPHWMFAKWKLKFLDDPKKVYGDTE-HVDTVANPALEAKAK 235
Query: 240 NISRLLKNIKF-SVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+ LK + ++M I + + + +P +K+W+
Sbjct: 236 PVWEFLKKFGWKDGNEVGQVMLAI-QEGAKPEDAAKQWVAANPGRVKDWV 284
>gi|260913934|ref|ZP_05920408.1| ABC superfamily ATP binding cassette transporter, binding protein
[Pasteurella dagmatis ATCC 43325]
gi|260632021|gb|EEX50198.1| ABC superfamily ATP binding cassette transporter, binding protein
[Pasteurella dagmatis ATCC 43325]
Length = 613
Score = 168 bits (426), Expect = 6e-40, Method: Composition-based stats.
Identities = 51/333 (15%), Positives = 109/333 (32%), Gaps = 33/333 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M + ++ + S + D+ P++ W +TA+ +IL + G +T I
Sbjct: 1 MKVLKSLSIAFLLLFSSDSLACDTNKPIKLGALDWESGQFSTALFDLILRKGYGCQTEIV 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
A +L I I W E + GA + D
Sbjct: 61 PGATNALETALAQNDIQIIAEQWVGRSPIIEQAVNEGKVQIIGNTLKGGATQGWYIPDYT 120
Query: 121 FALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
++ + + ++ A+ G ++ N S + +
Sbjct: 121 KKKHPTLKNVTDLLQFHHLFSDPEQPNKARFLNCPTGWTCEIFNTHLLKNTGLSKQFNNV 180
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE-------------- 217
+ ++I P +F W+P + + +
Sbjct: 181 HPGTGATLDAEISSAYEQRKPILFYYWQPTGLMAKYAFEPIEFPTYQPTCWEQLLHSDNQ 240
Query: 218 ---ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGR 274
+SGF + + V S + ++ P + L+K+I+F N+ + + NK++
Sbjct: 241 PSCVSGFPRSQLAMSVSSTFANQYPQLIELIKHIQFEPDTLNQAILEMAENKRNGSTQAF 300
Query: 275 TMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
L+ HPD+ + W+ Q +L++F+
Sbjct: 301 FFLQQHPDIWQKWVS-------QQAKEKLQQFL 326
>gi|257486820|ref|ZP_05640861.1| histidine transporter, periplasmic histidine-binding protein
[Pseudomonas syringae pv. tabaci ATCC 11528]
gi|330988663|gb|EGH86766.1| histidine transporter, periplasmic histidine-binding protein
[Pseudomonas syringae pv. lachrymans str. M301315]
Length = 337
Score = 168 bits (426), Expect = 7e-40, Method: Composition-based stats.
Identities = 52/345 (15%), Positives = 108/345 (31%), Gaps = 46/345 (13%)
Query: 1 MY---KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M ++L L A A+ P++F W + T + ++E+ GY+T
Sbjct: 1 MKSITRLLGCSLLALGLLGQTAGAAEKNAPIQFGALTWESGSLITEVLRTLVEKGYGYRT 60
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+ + +L I + W +G + + ++GA V
Sbjct: 61 DTLPGSTVSLETALAKNDIQVIAEEW-TGRSPVWVKAEADGKVLGLGNIVKGATEGWWVP 119
Query: 118 DVGFA-----------LGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMI 159
+ +KS D+A+YK + G +
Sbjct: 120 EYVIKGDAAKGIKPVAPDLKSVADLARYKDVFKDPESPDKGRFLNSPSGWTSEIVNTQKL 179
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG-EEI 218
+ S A +++ R P +F W P P+ + L +
Sbjct: 180 KAYGLTDSFVNFRTGSGAALDAEVASAIRRGKPVLFYYWSPTPLLGKYKLIKLEEPAFDA 239
Query: 219 SGFG----------------EASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI 262
+ A++ V +++ + P + + KN+ F + L N + +
Sbjct: 240 EAWKTLTDASNPNPRGTSSLAATLSIGVSAEFSKQYPELVSVFKNVDFPIDLLNRTLGEM 299
Query: 263 LNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ +D L+ HP++ K WL D + ++ +
Sbjct: 300 SDKHEDPGVASARFLKQHPEVWKAWLP-------ADVAAKVSHSL 337
>gi|229590394|ref|YP_002872513.1| putative glycine betaine/L-proline ABC transporter
substrate-binding periplasmic protein [Pseudomonas
fluorescens SBW25]
gi|229362260|emb|CAY49162.1| putative glycine betaine/L-proline ABC transporter,
substrate-binding periplasmic protein [Pseudomonas
fluorescens SBW25]
Length = 323
Score = 168 bits (426), Expect = 7e-40, Method: Composition-based stats.
Identities = 49/325 (15%), Positives = 112/325 (34%), Gaps = 28/325 (8%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M +L++ LF + + A DS PV+FA W T + +L+E G +
Sbjct: 9 MAGLLSLGLFAGSAATQAAGWCDSGKPVKFAGLNWESAMLLTDVLQTLLKEGYGCTVDTL 68
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV- 119
+L + I + W + G + V + GA V
Sbjct: 69 PGNSITMESALSSNDIQVLSEEWV-GRSEVWNKAAASGKVVGVGAPIVGATEGWYVPRYV 127
Query: 120 ----------GFALGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNN 162
A +K+ D+A+Y + + Y G +M+ +
Sbjct: 128 VEGDAKRALKAKAPALKTIADLAQYAELFKDPEEPGKGRFYNCPAGWTCELENSEMLKSY 187
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
+ + A + + + P +F W P P+ +++ L +
Sbjct: 188 GLESRYTNFRPGTGPALDAAVLSSYKRGEPILFYYWTPTPLMGQVDLIKLEEKPGVDK-- 245
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPD 282
+ S+ + + ++ P + +L+ + + L N+ + + D + + L+ HP+
Sbjct: 246 KISIQVGLSKAFHEQAPELVAVLEKVNLPIDLLNQNLARMTREHIDSPKLAKLFLQQHPE 305
Query: 283 LLKNWLIGVTTFDGQDPSRQLERFM 307
+ W+ + +++++ +
Sbjct: 306 IWHGWVS-------EAAAKKIDATL 323
>gi|157369047|ref|YP_001477036.1| glycine betaine ABC transporter substrate-binding protein [Serratia
proteamaculans 568]
gi|157320811|gb|ABV39908.1| Substrate-binding region of ABC-type glycine betaine transport
system [Serratia proteamaculans 568]
Length = 321
Score = 168 bits (426), Expect = 7e-40, Method: Composition-based stats.
Identities = 52/322 (16%), Positives = 109/322 (33%), Gaps = 29/322 (9%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
++A+ L + S A +S PV+FA W T + +L++ KT+
Sbjct: 11 LIALGLMTGSLSARAAGWCESGKPVKFAGLNWESGMLLTDVMQYVLQKGYDCKTDALPGN 70
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA- 122
+++ I +F W + + G V + GA V
Sbjct: 71 SITMEQAVGTNDIQVFAEEWI-GRSEVWNKAEKAGKAVSVGAPIVGAVEGWYVPRYVIEG 129
Query: 123 ----------LGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNNKFS 165
+KS D+AKY + + Y G ++ K
Sbjct: 130 DAKRKLKPLTPDLKSIPDLAKYVQVFRDQEEPDKGRFYNCPAGWTCELDNTAILKKFKLD 189
Query: 166 LKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEAS 225
K + A ++I R P +F W P PI L++ L
Sbjct: 190 DKFTNFRPGTGPALDTEILSSYRRGEPILFYYWSPTPIMGQLDLVKLEEPG---VDKNIH 246
Query: 226 VYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLK 285
+ + S + + P + ++L + + L N+ + + + + + + HP++ +
Sbjct: 247 IKVGISSVFNQQAPELVQVLSKVNLPLDLINQNLARMSKERISSEKLALEFFKQHPEIWQ 306
Query: 286 NWLIGVTTFDGQDPSRQLERFM 307
W+ +D +++++ +
Sbjct: 307 QWVS-------EDAAKKIQASL 321
>gi|294498310|ref|YP_003562010.1| glycine/betaine ABC transporter glycine/betaine- binding protein
OpuAC [Bacillus megaterium QM B1551]
gi|294348247|gb|ADE68576.1| glycine/betaine ABC transporter, glycine/betaine- binding protein
OpuAC [Bacillus megaterium QM B1551]
Length = 293
Score = 168 bits (426), Expect = 7e-40, Method: Composition-based stats.
Identities = 61/290 (21%), Positives = 109/290 (37%), Gaps = 8/290 (2%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M I+ + L + + A + + W + A T + +LEE GYK
Sbjct: 11 MLTIVIMLLVSACGNSNTASSTTTKKEITIGYIPWDEAVAVTFLWKELLEEK-GYKVKAV 69
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
V F + ID+F+ W P+ + + ++ A LAV D
Sbjct: 70 QSDVAPLFSGVAQGNIDLFLDVWMPTTHSSYMKRFGK-QVDVLGTWYDQADSGLAVPDYV 128
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+S D+ K E KI IEPG+ N D + L + L+E+S A
Sbjct: 129 ---DAQSLADLKNKKDEFNEKIISIEPGSGINGLTKDHA-MPSYGLTDWNLVESSTAAML 184
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF-GEASVYTVVRSDYLDKCP 239
S++ + N P V W PH N+ YL + G + ++ + + + P
Sbjct: 185 SELDKAIANKEPIVVTLWRPHWAFEKYNLRYLKDPKNTMNPTGPEKIQSISKKAFKEDYP 244
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
++ LK+ S + I N+ +D + + + + ++W+
Sbjct: 245 EAAKWLKDFSISADQLASLESEI-NSAKDETKGVKNWISKNKKVTESWVK 293
>gi|332284888|ref|YP_004416799.1| putative glycine betaine/choline/proline transport system
substrate-binding protein [Pusillimonas sp. T7-7]
gi|330428841|gb|AEC20175.1| putative glycine betaine/choline/proline transport system
substrate-binding protein [Pusillimonas sp. T7-7]
Length = 355
Score = 168 bits (426), Expect = 7e-40, Method: Composition-based stats.
Identities = 44/321 (13%), Positives = 100/321 (31%), Gaps = 37/321 (11%)
Query: 16 ISYARDADSCT---PVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLK 72
++ A D +C P++F W + I ++ G K+ + +L+
Sbjct: 43 VAQAADGPACELDRPIKFGGMNWESNLVLVEVERFIADKGYGCKSEVLPTETLPALAALE 102
Query: 73 NKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA--LGIKSYQD 130
+DI W S+ + G +K + + G + +K D
Sbjct: 103 RGDLDINTEIWLNSVAEPWEKAEATGKVKRIGDIYMGG-EAWFIPKYTAERLPELKKASD 161
Query: 131 IAKYKKELGA-------KIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
+ K+K E + YG G ++ + + +
Sbjct: 162 LPKFKDEFKDPEEPSKGRFYGCPAGWGCEVVSGNLFKALGLGDTFTLFSPGTGATQKAAL 221
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI-----------------SGFGEASV 226
+ VF W P P+ L++ L S + + V
Sbjct: 222 TAAYKRKENVVFYYWYPTPLVGSLDLVKLELPAYDKEKHACLTDPNCANPEPSAYPDNPV 281
Query: 227 YTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKN 286
+T V + + P ++ L + + + ++ M + N+ + + L+ D+
Sbjct: 282 FTAVTTQFTQDAPKLTEFLSKVAVPLPVMDQAMAYMEENEAEPDATAQWFLQNQSDVWSA 341
Query: 287 WLIGVTTFDGQDPSRQLERFM 307
W+ D + +++ +
Sbjct: 342 WVP-------ADVAERVKAAL 355
>gi|188585717|ref|YP_001917262.1| Substrate-binding region of ABC-type glycine betaine transport
system [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179350404|gb|ACB84674.1| Substrate-binding region of ABC-type glycine betaine transport
system [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 292
Score = 168 bits (426), Expect = 7e-40, Method: Composition-based stats.
Identities = 57/287 (19%), Positives = 122/287 (42%), Gaps = 8/287 (2%)
Query: 4 ILAVCLFLTTFSIS--YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
++A + F + + + ++ + F W A T S +LE + Y T + +
Sbjct: 9 VVAAAVIGAFFIFTNDFGDNGEAEDTIEFGFVNWACSVAKTHTISAVLENEMNYDTQLTM 68
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ + D F+ W P + + I + +GA+ L V +
Sbjct: 69 ADAGPVYADVAAGDQDAFVSAWLPVTHQSYYEDYGD-DIVDLGPVYEGARIGLVVPEYLE 127
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
I S +++ +Y++E +I GI+ G + + + SL+ + L E+S+ A
Sbjct: 128 E--IDSIEEMDEYEEEFDTEIVGIDAGAGIMGSTDEALETYE-SLENYTLTESSDAAMTG 184
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNI 241
++ N V W PH ++ ++ +L E++ G E ++ +VR ++ D P++
Sbjct: 185 ELGTAINNEEWIVVTGWTPHWKFAEWDLKFLEDPEQVYGEAE-DIHVMVRENFDDDQPDV 243
Query: 242 SRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
++LL+N E+M +++ D Q + + D+++ WL
Sbjct: 244 NQLLENFYLEEEELGEIMA-MIDEMDDEQEAAEQWIDENQDIVEEWL 289
>gi|325288675|ref|YP_004264856.1| Substrate-binding region of ABC-type glycine betaine transport
system [Syntrophobotulus glycolicus DSM 8271]
gi|324964076|gb|ADY54855.1| Substrate-binding region of ABC-type glycine betaine transport
system [Syntrophobotulus glycolicus DSM 8271]
Length = 295
Score = 168 bits (426), Expect = 8e-40, Method: Composition-based stats.
Identities = 55/296 (18%), Positives = 102/296 (34%), Gaps = 17/296 (5%)
Query: 2 YKILAVCLFLTTFSISYAR--------DADSCTPVRFADTGWTDIAATTAMTSVILEEIL 53
+++ + A A+ V W + A + + VILE+
Sbjct: 8 KRLILTGMIAVLMISLMAGCSTDQSNKPAEGKGTVNIGYVNWAECIAASNLWKVILEDQ- 66
Query: 54 GYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
Y N+ L V F L ID+FM W P + ++ + AK
Sbjct: 67 NYTVNLTQLDVAPLFVGLNKGDIDVFMDAWLPITHQTYWNEYKDTLEDYGIWYQEPAKIG 126
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+ V + S + + + KI GI+ G + F +++
Sbjct: 127 IVVPKYV---TLDSIAQLKENGDKFEKKIIGIDAGAGIMKAAAAANKKYALG---FDVVQ 180
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
SE A + + N W PH + + ++ YL E+ G E ++ V +
Sbjct: 181 GSEPAMMAALDNAYAKNEWIAVTGWSPHWMFAKYSLKYLDDPEKEFGEAE-EIHIVANNQ 239
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+ K P+++ +LK K + A + I NN + + + D + W+
Sbjct: 240 FSGKQPDVAAMLKKFKMTDAQIGTLEDFI-NNGMQPSEAAKKWIAENKDTVDEWIK 294
>gi|33602342|ref|NP_889902.1| putative periplasmic substrate-binding protein [Bordetella
bronchiseptica RB50]
gi|33576781|emb|CAE33860.1| putative periplasmic substrate-binding protein [Bordetella
bronchiseptica RB50]
Length = 333
Score = 168 bits (426), Expect = 8e-40, Method: Composition-based stats.
Identities = 52/324 (16%), Positives = 105/324 (32%), Gaps = 37/324 (11%)
Query: 13 TFSISYARDADSCT---PVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFR 69
+ A D C PV F W + I+E+ G KT++
Sbjct: 18 FSGAAQAADQPQCEVSRPVNFGGMNWESNLVLVDIERFIMEKGYGCKTDVLPTETLPALA 77
Query: 70 SLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA--LGIKS 127
+L+ +DI W S+ + G +K V E G V +KS
Sbjct: 78 ALERGDLDINTEIWLNSVADPWDRAQKTGKVKRVGELYMGG-EAWFVPRYTAERLPELKS 136
Query: 128 YQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
D+ K+K + YG G ++ + K + A
Sbjct: 137 AADLPKFKDRFKDPEEPGKGRFYGCPAGWGCEVTSTNLFHALKLDDSYTLYSPGTGAAQK 196
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI-----------------SGFGE 223
+ + + VF W P P+ +++ L S + E
Sbjct: 197 AALMSAYKRKQDVVFYYWYPTPLVGSMDLVKLELPPYDAEKHKCLTAPKCSDPQPSAYPE 256
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDL 283
V+T V + + ++ P ++ L + + + ++ + + + + V + L+ D+
Sbjct: 257 NPVFTAVNTRFSEEAPKLTEFLSKVAVPLPVMDQTLAHMEESGDESGAVAQWFLKNQADV 316
Query: 284 LKNWLIGVTTFDGQDPSRQLERFM 307
K W+ D + +++ +
Sbjct: 317 WKKWVP-------ADVAERVQTAL 333
>gi|148549184|ref|YP_001269286.1| glycine betaine ABC transporter substrate-binding protein
[Pseudomonas putida F1]
gi|148513242|gb|ABQ80102.1| Substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas putida F1]
Length = 286
Score = 168 bits (426), Expect = 8e-40, Method: Composition-based stats.
Identities = 51/289 (17%), Positives = 106/289 (36%), Gaps = 11/289 (3%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNI 59
+ K+ T ++ + V W D ATT + + ++++ LGY +
Sbjct: 4 LKKMRRFLGVGTALVMAMSAAQAMAKEVSIGYVDGWADSVATTNVAAEVIKQKLGYDVKL 63
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ +A + ++ + +D + W P + ++ N + AK L V +
Sbjct: 64 QAVATGIMWQGVATGKLDAMLSAWLPVTHGEYW-AKNKDNVVDYGPNFKDAKIGLIVPEY 122
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
A+ I K +I GI+ G+ + I + ++L +S A
Sbjct: 123 VKAVSIADL----KTDNSFKDRIVGIDAGSGVMLKTDQAIKDYGL--TSYKLQASSGAAM 176
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+++ R W PH + + + +L + + G +V ++ + K P
Sbjct: 177 TAELGRAYAKQQSIAVTGWVPHWMFAKWKLKFLEDPKGVYG-AAETVNSIGSKELATKAP 235
Query: 240 NISRLLKNIKF-SVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
++ LK + S E+M I + + + HPD +K W
Sbjct: 236 EVAEFLKKFNWQSKDEIGEVMLAI-QEGAKPEAAAKDWVAKHPDRVKEW 283
>gi|299822938|ref|ZP_07054824.1| glycine betaine/proline ABC superfamily ATP binding cassette
transporter [Listeria grayi DSM 20601]
gi|299816467|gb|EFI83705.1| glycine betaine/proline ABC superfamily ATP binding cassette
transporter [Listeria grayi DSM 20601]
Length = 284
Score = 168 bits (426), Expect = 8e-40, Method: Composition-based stats.
Identities = 58/273 (21%), Positives = 105/273 (38%), Gaps = 11/273 (4%)
Query: 17 SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGI 76
+ +D + + W A+T + +LE+ GYK L V ++S+ NK
Sbjct: 23 AGGASSDKNKKINLSYVEWDTEVASTHVIGKVLEDQ-GYKVTYTPLDNSVMWQSVANKES 81
Query: 77 DIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKK 136
D + W P+ + + + NL+GAK L V + I K
Sbjct: 82 DAMVAAWLPNTHAAQYKKY-KSKVDDLGVNLKGAKIGLTVPAYM------NVDSIEDLKN 134
Query: 137 ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFL 196
+ KI GIEPG + +LKG+ + +S A + + +N V
Sbjct: 135 QANKKITGIEPGAGVVSAAEKATKDYP-NLKGWEVDTSSSGAMTVSLAKALKNKQDIVIT 193
Query: 197 SWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALEN 256
W PH + + + YL ++ G E+ ++T+ R P ++L +S
Sbjct: 194 GWSPHWMFAKYKLKYLEDPKKSFGDAES-IHTMARQGLKKDDPKAYKILDKFNWSKQDIE 252
Query: 257 EMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
++M I N+ +D + ++ H + W
Sbjct: 253 DVMLEI-NDGKDPKDAAADWVKKHKKEVSEWTK 284
>gi|66047006|ref|YP_236847.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. syringae B728a]
gi|63257713|gb|AAY38809.1| Substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. syringae B728a]
Length = 337
Score = 168 bits (426), Expect = 8e-40, Method: Composition-based stats.
Identities = 55/330 (16%), Positives = 107/330 (32%), Gaps = 37/330 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+ ++L L A A+ P++F W + T + I+E+ GY T+
Sbjct: 4 ITRLLGCSLLALGLLGQTATAAEKAKPIQFGALTWESGSLITEVLRTIVEKGYGYPTDTL 63
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ +L I + W EEG + + ++GA V +
Sbjct: 64 PGSTVSLETALAKNDIQVIAEEW-TGRSPVWVKAEEEGKVLGLGNIVKGATEGWWVPEYV 122
Query: 121 FA-----------LGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNN 162
+KS D+A+YK + G +
Sbjct: 123 IKGDAAKGIKPLAPDLKSVADLARYKDVFKDPESPDKGRFLNSPSGWTSEIVNTQKLKAY 182
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG-EEISGF 221
+ S A +++ R P +F W P P+ + L + +
Sbjct: 183 GLADSFVNFRTGSGAALDAEVASAIRRGKPVLFYYWSPTPLLGKYKLIKLDEPAFDAEAW 242
Query: 222 G----------------EASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNN 265
A++ V +++ + P + + K + F + L N+ + + +
Sbjct: 243 KTLTDASNPNPRGTSSLAATLSIGVSAEFSKQYPELVSVFKGVDFPIDLLNKTLGEMSDK 302
Query: 266 KQDRQFVGRTMLRTHPDLLKNWL-IGVTTF 294
+D + V L+ HP++ K WL V T
Sbjct: 303 HEDAKVVAARFLKQHPEVWKAWLPADVATR 332
>gi|21220116|ref|NP_625895.1| glycine betaine transport system permease [Streptomyces coelicolor
A3(2)]
gi|6119662|emb|CAB59473.1| glycine betaine transport system permease protein [Streptomyces
coelicolor A3(2)]
Length = 871
Score = 168 bits (426), Expect = 8e-40, Method: Composition-based stats.
Identities = 57/310 (18%), Positives = 108/310 (34%), Gaps = 17/310 (5%)
Query: 4 ILAVCLFLTTFSISYARDADS----------CTPVRFADTGWTDIAATTAMTSVILEEIL 53
I+ + L + D V W + A+T + ILE+
Sbjct: 306 IVILALVAGGMGMFGGSDDADTAGGGKNVGDGKKVSIGYIPWDEGVASTFLWKEILEQR- 364
Query: 54 GYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
G++ K + +L ID W P+ + + ++ +
Sbjct: 365 GFEVEAKQFEAGPLYTALAQGNIDFQTDSWLPTTHEQYWKKYGK-QLEDLGSWYDETSLE 423
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
L V I S +D+ G KI GIEP + + K +++++
Sbjct: 424 LTVPAY--MKDINSLEDLKGKADLFGGKITGIEPSAGEMNLLKTKVLKEYGLDKEYKVVD 481
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+S A ++++R P V W PH +D + L + G G+ V+++ R
Sbjct: 482 SSTPAMLAELKRAYSKQEPIVTTLWSPHWAYNDYKLKKLKDPKGAWGKGDG-VHSLSRKG 540
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQF-VGRTMLRTHPDLLKNWLIGVT 292
+ P +++ LK+ + + I + +Q RT L +P ++ L V
Sbjct: 541 FSGDNPVVAKWLKDFSMTEKQLTSLEAEINKAGKGQQQKAVRTWLEANPGVVDK-LAPVE 599
Query: 293 TFDGQDPSRQ 302
G P+
Sbjct: 600 GGSGATPAEA 609
Score = 165 bits (417), Expect = 8e-39, Method: Composition-based stats.
Identities = 59/271 (21%), Positives = 110/271 (40%), Gaps = 6/271 (2%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNK 74
S A A++ P+ A W + A T + +LE GYK N+K + V + L +
Sbjct: 600 GGSGATPAEAKQPLDVAWFPWEEDVAVTYLWKNVLERR-GYKMNLKQMDVGPVYTGLASG 658
Query: 75 GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKY 134
GID+ W P + ++ ++ + + +AV +KS D+
Sbjct: 659 GIDLNFDAWLPYAQSNYWNKHKD-NLVDLGTWYEPTSLEIAVPSYV--KDVKSLADLKGK 715
Query: 135 KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAV 194
KI GIEPG Q + + + + +++ S A ++++R P
Sbjct: 716 SDLFDGKIIGIEPGTGEMQLLKNDVLPGYGLEDEYEVVDGSTPAMLAELKRALAKKEPVA 775
Query: 195 FLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVAL 254
W PH SD + L ++ G G ++ T+ + ++ P +++ +KN K S
Sbjct: 776 VTLWSPHWAYSDYELTKLKDPKKAFGEG-NTIRTISSKKFPEQYPQLTKWIKNFKMSEDE 834
Query: 255 ENEMMKLILNNKQ-DRQFVGRTMLRTHPDLL 284
+ I + Q + L+ HPD++
Sbjct: 835 LGSLEAEIKDRGQGQEEEAVAAWLKEHPDVV 865
>gi|115360504|ref|YP_777641.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia ambifaria AMMD]
gi|115285832|gb|ABI91307.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia ambifaria AMMD]
Length = 293
Score = 168 bits (426), Expect = 8e-40, Method: Composition-based stats.
Identities = 63/290 (21%), Positives = 106/290 (36%), Gaps = 8/290 (2%)
Query: 2 YKILAVCLFLTTFS-ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+LA T + + A + PV+ A T W D+ A + +LE L
Sbjct: 7 KSLLAKLAVSTVVARSAGVGVAVAAEPVKIAVTNWADVLAVANVAKYVLETNLKQPVQFV 66
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ + ++ + +DI +G W P + + V G + AV
Sbjct: 67 QADIGIQYQGVARGDLDIMVGGWLPVTHATYYAKY-KNDLDDVGIIYTGGRNGWAVPTYI 125
Query: 121 FALGIKSYQDIAKY--KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ S D++K K +L I GIEPG Q I G+ L +SE
Sbjct: 126 PESQLSSIADLSKPEVKSKLNGTIQGIEPGGGLMQASEKTIKAYNLD--GYNLQASSEAG 183
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+ + R ++ V W PH + + YL + G GE ++ + K
Sbjct: 184 MLASVSRAYQSKQWIVATVWSPHWLFQKWQMRYLKDPKGTLG-GEEQIHAFASKKFAGKF 242
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
P K++K ++A + N+ D + + HP+ LK WL
Sbjct: 243 PRADVFFKHLKLTLADVEAIEFE-GNSTNDYATAAKKFVDAHPEKLKAWL 291
>gi|254387391|ref|ZP_05002638.1| glycine betaine ABC transport system permease [Streptomyces sp.
Mg1]
gi|194346183|gb|EDX27149.1| glycine betaine ABC transport system permease [Streptomyces sp.
Mg1]
Length = 598
Score = 168 bits (425), Expect = 8e-40, Method: Composition-based stats.
Identities = 48/269 (17%), Positives = 97/269 (36%), Gaps = 6/269 (2%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKG 75
D + W + A+T + +LE G++ + + L + F L
Sbjct: 332 AGGLADIGKGRKISLGYIPWDEGVASTFLWKELLERR-GFEVDARQLELGALFTGLAGGQ 390
Query: 76 IDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK 135
ID W P + + L+V +KS D+
Sbjct: 391 IDFQTDSWLPVTHAQYWEKYG-NKLDDLGSWYGSTSIELSVPSY--MKDVKSLADLKGKG 447
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
+ +I GIEP + D + +++++ S ++++R + P
Sbjct: 448 SQFKGRIIGIEPSAGAMGLLKDKVLPAYGLDGEYKVVDGSTPGMLAELKRAYDKHEPVAV 507
Query: 196 LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
+ W PH + ++H L + G G+ ++T+ R + P +++ L++ K S A
Sbjct: 508 VLWSPHWAYASYDLHKLQDPKGSWGKGDG-IHTLARKGFAKDEPEVAKWLRSFKLSEAQL 566
Query: 256 NEMMKLILNNKQ-DRQFVGRTMLRTHPDL 283
+ I + + Q R L HP++
Sbjct: 567 TGLEAKIQESGKGKEQQAVRAWLAEHPEV 595
>gi|269968085|ref|ZP_06182122.1| hypothetical protein VMC_35520 [Vibrio alginolyticus 40B]
gi|269827331|gb|EEZ81628.1| hypothetical protein VMC_35520 [Vibrio alginolyticus 40B]
Length = 340
Score = 168 bits (425), Expect = 9e-40, Method: Composition-based stats.
Identities = 50/319 (15%), Positives = 104/319 (32%), Gaps = 38/319 (11%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVT-FRSLKNKGIDI 78
+AD C + AD W + + +L E + T ++ D+
Sbjct: 29 ANADECGKITIADMNWNSASLMAHIDQFVLNEGYQCDAELIPGDSVPTGTSMIEKGQPDV 88
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVNDVGFALG---------IKSY 128
W +++ + + + +++ +E+L G + V IK
Sbjct: 89 APELWTNGIKEALDKGIADKRLRIASESLVNGGEEGFWVPAYLVKQYPELATIEGVIKHA 148
Query: 129 QDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI-EASELASFSQIRRDQ 187
+ + + Y G + N S GF ++ S A I +
Sbjct: 149 KLFEHPEDDDKFAFYSCPAGWTCQITSGHLFNALGLSEHGFEMVDPGSGAALAGTIAKAY 208
Query: 188 RNNIPAVFLSWEPHPINSDLNIHYLPGG-------------------EEISGFGEASVYT 228
+P W P P+ ++ + G +++ + + V T
Sbjct: 209 DRKMPWFGYYWSPTPVLGKYDMVKVDFGSGTDLEEYRNCTTQPDCASPKVTMYPPSPVRT 268
Query: 229 VVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
V + K P L+ F+ +EM+ + +N D + T+PDL K W+
Sbjct: 269 VTTEAFASKEPQAFAYLQKRGFTNEQMSEMLAWMEDNYADGEEAMFYFFNTYPDLWKGWV 328
Query: 289 IGVTTFDGQDPSRQLERFM 307
+D + ++E+ +
Sbjct: 329 S-------EDVAVRIEKAL 340
>gi|254472240|ref|ZP_05085640.1| glycine betaine/L-proline ABC transporter,substrate-binding
periplasmic protein [Pseudovibrio sp. JE062]
gi|211958523|gb|EEA93723.1| glycine betaine/L-proline ABC transporter,substrate-binding
periplasmic protein [Pseudovibrio sp. JE062]
Length = 341
Score = 168 bits (425), Expect = 9e-40, Method: Composition-based stats.
Identities = 50/344 (14%), Positives = 109/344 (31%), Gaps = 45/344 (13%)
Query: 2 YKILAVCLFLTTFSISYARDADS----CTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
LA C+ F++S A AD P+ FA W A ++ I E+ G +T
Sbjct: 5 KSALAACVVALPFAVSSAEAADPVCELDRPIVFAGLDWDSNAFHNSVAQFIAEKGYGCQT 64
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
++ + + ID+ M W ++ + +A + + N A V
Sbjct: 65 DVIPGSTIPLLNGMARGDIDVTMEIWPDNVTEALAEGQAKKQFVDLGVNFPDATQAWFVP 124
Query: 118 DV------GFALGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNNKF 164
A G+KS D+ K+K + Y G +N K
Sbjct: 125 KYLVEGDDAPAKGLKSVADLPKFKDVFSDPEEPEKGRFYNCIAGWGCEVINSKKLNAYKL 184
Query: 165 SLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSD------------------ 206
+ + A + I + R P +F W P +
Sbjct: 185 NDTFVNFRPGTGAALAAAIESNIRRKKPILFYYWGPTWVMGKVADDLIQLEEPAYNKEVW 244
Query: 207 LNIHYLPGGEEISG---FGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLIL 263
+ +++ + ++ + V +++ K P + L + + ++ + +
Sbjct: 245 DELSAETDPSKVTKAVAYPLSATHVFVNTEFHTKAPKLVEFLTAYETTSNDVSKALAYMQ 304
Query: 264 NNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ L+ + ++ W+ D + +++ +
Sbjct: 305 DTGGTTDDAAVEFLKNNEEIWTGWVP-------ADVAERVKSAL 341
>gi|331010290|gb|EGH90346.1| histidine transporter, periplasmic histidine-binding protein
[Pseudomonas syringae pv. tabaci ATCC 11528]
Length = 337
Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats.
Identities = 53/345 (15%), Positives = 109/345 (31%), Gaps = 46/345 (13%)
Query: 1 MY---KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M ++L L A A+ P++F W + T + ++E+ GY+T
Sbjct: 1 MKSITRLLGCSLLALGLLGQTAGAAEKNAPIQFGALTWESGSLITEVLRTLVEKGYGYRT 60
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+ + +L I + W +G + + ++GA V
Sbjct: 61 DTLPGSTVSLETALAKNDIQVIAEEW-TGRSPVWVKAEADGKVLGLGNIVKGATEGWWVP 119
Query: 118 DVGFA-----------LGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMI 159
+ +KS D+A+YK + G +
Sbjct: 120 EYVIKGDAAKGIKPVAPDLKSVADLARYKDVFKDPESPDKGRFLNSPSGWTSEIVNTQKL 179
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG-EEI 218
F+ S A +++ R P +F W P P+ + L +
Sbjct: 180 KAYGFTDSFVNFRTGSGAALDAEVASAIRRGKPVLFYYWSPTPLLGKYKLIKLEEPAFDA 239
Query: 219 SGFG----------------EASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI 262
+ A++ V +++ + P + + KN+ F + L N + +
Sbjct: 240 EAWKTLTDASNPNPRGTSSLAATLSIGVSAEFSKQYPELVSVFKNVDFPIDLLNRTLGEM 299
Query: 263 LNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ +D L+ HP++ K WL D + ++ +
Sbjct: 300 SDKHEDPGVASARFLKQHPEVWKAWLP-------ADVAAKVSHSL 337
>gi|311104708|ref|YP_003977561.1| glycine betaine ABC transporter substrate-binding family protein
[Achromobacter xylosoxidans A8]
gi|310759397|gb|ADP14846.1| substrate binding domain of ABC-type glycine betaine transport
system family protein 1 [Achromobacter xylosoxidans A8]
Length = 352
Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats.
Identities = 47/308 (15%), Positives = 97/308 (31%), Gaps = 34/308 (11%)
Query: 26 TPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYP 85
PVRF+ W + +LE G KT +++ +L+ +D+ W
Sbjct: 50 RPVRFSGLNWESNLVLAGIERYVLEHGYGCKTTVEIGETLPMLAALQRGDVDVTPEVWPG 109
Query: 86 SLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA--LGIKSYQDIAKYKKELGA--- 140
+E L G + V A V +KS D+A++K+
Sbjct: 110 QIEGAWKKALASGKVLGVGHVY-DAGEGWYVPRYTVERHPDLKSAADLARFKEVFADPEE 168
Query: 141 ----KIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFL 196
+IYG G +++ K S A + I + VF
Sbjct: 169 PGRGRIYGCPAGWACGTLNENLLRALKLEKDYAMFAPGSGAAQKAAIVSAYKRKRDIVFY 228
Query: 197 SWEPHPINSDLN-------------IHYLPGGEEISG----FGEASVYTVVRSDYLDKCP 239
W P + L+ + + + F V T V + + + P
Sbjct: 229 YWTPTSLVGALDLVKLELPAFDQAAYTCMTDPKCANPVATEFKPNPVVTGVNAQFAKQAP 288
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDP 299
++ L + + + + N ++ + R L+ + + + W+
Sbjct: 289 QLAEFLGKLTVPSDAIDATLGWLENEGKEPEDAARYFLKQYGPVWRQWMP-------AQA 341
Query: 300 SRQLERFM 307
+ +++ +
Sbjct: 342 ADRVQAAL 349
>gi|257483861|ref|ZP_05637902.1| histidine transporter, periplasmic histidine-binding protein
[Pseudomonas syringae pv. tabaci ATCC 11528]
Length = 320
Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats.
Identities = 53/330 (16%), Positives = 106/330 (32%), Gaps = 33/330 (10%)
Query: 1 MYKILAVCLFLTTFSISYARD-----ADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M K L L S +S PV+FA W T + V+L++ G
Sbjct: 1 MKKALLTTLVSAGLLASAGASQAAGWCESGKPVKFAGLNWESAMLLTDILQVVLDKGYGC 60
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
+ +L I IF W + G + V + GA
Sbjct: 61 TVDALPGNSIAMENALSTNDIQIFAEEWV-GRSEVWNKAAAAGKVVGVGAPIVGAVEGWY 119
Query: 116 VNDV-----------GFALGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILD 157
V A +KS D+A+Y + Y G +
Sbjct: 120 VPRYVIEGDAKRKLEAKAPNLKSISDLAQYSAVFKDQEEPGKGRFYNCPAGWTCELENSE 179
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
M+ + K + A + I + P + W P P+ +++ L +
Sbjct: 180 MLKSYGLESKYTNFRPGTGPALDAAILSSYKRGEPILTYYWSPTPLMGQVDLVRLEE--K 237
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTML 277
+ V + D+ P + +L+ + + L N+ + + + + + + L
Sbjct: 238 AGVNKTIDIKVGVSKVFHDEAPELVAILEKVNLPIDLLNQNLGRMAKERIESPKLAKIFL 297
Query: 278 RTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ HP++ W+ +D +++++ +
Sbjct: 298 KEHPEVWHKWVS-------EDAAKKVDASL 320
>gi|26988472|ref|NP_743897.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas putida KT2440]
gi|24983234|gb|AAN67361.1|AE016362_5 glycine betaine-binding protein, putative [Pseudomonas putida
KT2440]
Length = 287
Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats.
Identities = 51/289 (17%), Positives = 106/289 (36%), Gaps = 11/289 (3%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNI 59
+ K+ T ++ + V W D ATT + + ++++ LGY +
Sbjct: 5 LKKMRRFLGVGTALVMAMSAAQAMAKEVSIGYVDGWADSVATTNVAAEVIKQKLGYDVKL 64
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ +A + ++ + +D + W P + ++ N + AK L V +
Sbjct: 65 QAVATGIMWQGVATGKLDAMLSAWLPVTHGEYW-AKNKDNVVDYGPNFKDAKIGLIVPEY 123
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
A+ I K +I GI+ G+ + I + ++L +S A
Sbjct: 124 VKAVSIADL----KTDNSFKDRIVGIDAGSGVMLKTDQAIKDYGL--TSYKLQASSGAAM 177
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+++ R W PH + + + +L + + G +V ++ + K P
Sbjct: 178 TAELGRAYAKQQSIAVTGWVPHWMFAKWKLKFLEDPKGVYG-AAETVNSIGSKELATKAP 236
Query: 240 NISRLLKNIKF-SVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
++ LK + S E+M I + + + HPD +K W
Sbjct: 237 EVAEFLKKFNWQSKDEIGEVMLAI-QEGAKPEAAAKDWVAKHPDRVKEW 284
>gi|167032345|ref|YP_001667576.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas putida GB-1]
gi|166858833|gb|ABY97240.1| Substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas putida GB-1]
Length = 286
Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats.
Identities = 53/289 (18%), Positives = 107/289 (37%), Gaps = 11/289 (3%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNI 59
+ K+ T ++ + V W D ATT + + ++++ LGY +
Sbjct: 4 LKKMRRFLGVGTALVMAMSAAQAMAKEVSIGYVDGWADSVATTNVAAEVIKQKLGYDVKL 63
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ +A + ++ + +D + W P + ++ N + AK L V +
Sbjct: 64 QAVATGIMWQGVATGKLDAMLSAWLPVTHGEYWTK-NKDNVVDYGPNFKDAKIGLIVPEY 122
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
A+ I K KI GI+ G+ + I + G++L +S A
Sbjct: 123 VKAVSIADL----KTDSSFKQKIVGIDAGSGVMLKTDQAIKDYDL--TGYKLQASSGAAM 176
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+++ R W PH + + + +L + + G +V ++ + K P
Sbjct: 177 TAELGRAYAKQQSIAVTGWVPHWMFAKWKLKFLEDPKGVYG-AAETVNSIGSKELATKAP 235
Query: 240 NISRLLKNIKF-SVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
++ LK + S E+M I + + + HPD +K W
Sbjct: 236 EVAEFLKKFNWQSKDEIGEVMLAI-QEGAKPEAAAKDWVAKHPDRVKEW 283
>gi|330987241|gb|EGH85344.1| histidine transporter, periplasmic histidine-binding protein
[Pseudomonas syringae pv. lachrymans str. M301315]
Length = 322
Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats.
Identities = 53/330 (16%), Positives = 107/330 (32%), Gaps = 33/330 (10%)
Query: 1 MYKILAVCLFLTTFSISYARD-----ADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M K L L S +S PV+FA W T + V+L++ G
Sbjct: 3 MKKALLTTLVSAGLLASAGASQAAGWCESGKPVKFAGLNWESAMLLTDILQVVLDKGYGC 62
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
+ +L I IF W + G + V + GA
Sbjct: 63 TVDALPGNSIAMENALSTNDIQIFAEEWV-GRSEVWNKAAAAGKVVGVGAPIVGAVEGWY 121
Query: 116 VNDV-----------GFALGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILD 157
V A +KS D+A+Y + Y G +
Sbjct: 122 VPRYVIEGDAKRKLEAKAPNLKSISDLAQYSAVFKDQEEPGKGRFYNCPAGWTCELENSE 181
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
M+ + K + A + I + P + W P P+ +++ +L +
Sbjct: 182 MLKSYGLESKYTNFRPGTGPALDAAILSSYKRGEPILTYYWSPTPLMGQVDLVHLEE--K 239
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTML 277
+ V + D+ P + +L+ + + L N+ + + + + + + L
Sbjct: 240 AGVNKTIDIKVGVSKVFHDEAPELVAILEKVNLPIDLLNQNLGRMAKERIESPKLAKIFL 299
Query: 278 RTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ HP++ W+ +D +++++ +
Sbjct: 300 KEHPEVWHKWVS-------EDAAKKVDASL 322
>gi|330896890|gb|EGH28480.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. japonica str.
M301072PT]
Length = 337
Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats.
Identities = 54/342 (15%), Positives = 110/342 (32%), Gaps = 43/342 (12%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+ ++L L A A+ P++F W + T + I+E+ GY T+
Sbjct: 4 ITRLLGCSLLALGLLGQTATAAEKTKPIQFGALTWESGSLITEVLRTIVEKGYGYPTDTL 63
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ +L I + W EEG + + ++GA V +
Sbjct: 64 PGSTVSLETALAKNDIQVIAEEW-TGRSPVWVKAEEEGKVLGLGNIVKGATEGWWVPEYV 122
Query: 121 FA-----------LGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNN 162
+KS D+A+YK + G +
Sbjct: 123 IKGDAAKGIKPLAPDLKSVADLARYKDVFKDPESPDKGRFLNSPSGWTSEIVNTQKLKAY 182
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG-EEISGF 221
+ S A +++ R P +F W P P+ + L + +
Sbjct: 183 GLADSFVNFRTGSGAALDAEVASSIRRGKPVLFYYWSPTPLLGKYKLIKLDEPAFDAEAW 242
Query: 222 G----------------EASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNN 265
A++ V +++ + P + + K + F + L N+ + + +
Sbjct: 243 KTLTDASNPNPRGTSSLAATLSIGVSAEFSKQYPELVSVFKGVDFPIDLLNKTLGEMSDK 302
Query: 266 KQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+D + V L+ +PD+ K WL D + ++ +
Sbjct: 303 HEDAKVVAARFLKQNPDVWKAWLP-------ADVAERVSSGL 337
>gi|302188563|ref|ZP_07265236.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. syringae 642]
Length = 322
Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats.
Identities = 53/330 (16%), Positives = 106/330 (32%), Gaps = 33/330 (10%)
Query: 1 MYKILAVCLFLTTFSISYARD-----ADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M K L L S +S PV+FA W T + V+L++ G
Sbjct: 3 MKKALLTTLVSAGLLASAGASQAAGWCESGKPVKFAGLNWESAMLLTDILQVVLDKGYGC 62
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
+ +L I IF W + G + V + GA
Sbjct: 63 TVDALPGNSIAMENALGTNDIQIFAEEWV-GRSEVWNKAAAAGKVVGVGAPIVGAVEGWY 121
Query: 116 VNDV-----------GFALGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILD 157
V A +KS D+A+Y + Y G +
Sbjct: 122 VPRYVIEGDPKRKLEAKAPNLKSISDLAQYSAVFKDQEEPGKGRFYNCPAGWTCELENSE 181
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
M+ + K + A + I + P + W P P+ +++ L +
Sbjct: 182 MLKSYGLESKYTNFRPGTGPALDAAILSSYKRGEPILTYYWSPTPLMGQVDLVRLEE--K 239
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTML 277
+ V + D+ P + +L+ + + L N+ + + + + + + L
Sbjct: 240 AGVNKTIDIKVGVSKVFHDEAPELVAILEKVNLPIDLLNQNLGRMAKERIESPKLAKIFL 299
Query: 278 RTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ HP++ W+ +D +++++ +
Sbjct: 300 KEHPEVWHKWVS-------EDAAKKVDASL 322
>gi|330942467|gb|EGH45064.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. pisi str. 1704B]
Length = 337
Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats.
Identities = 54/342 (15%), Positives = 110/342 (32%), Gaps = 43/342 (12%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+ ++L L A A+ P++F W + T + I+E+ GY T+
Sbjct: 4 ITRLLGCSLLALGLLGQTATAAEKTKPIQFGALTWESGSLITEVLRTIVEKGYGYPTDTL 63
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ +L I + W EEG + + ++GA V +
Sbjct: 64 PGSTVSLETALAKNDIQVIAEEW-TGRSPVWVKAEEEGKVLGLGNIVKGATEGWWVPEYV 122
Query: 121 FA-----------LGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNN 162
+KS D+A+YK + G +
Sbjct: 123 IKGDAAKGIKPLAPDLKSVADLARYKNVFKDPESPDKGRFLNSPSGWTSEIVNTQKLKAY 182
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG-EEISGF 221
+ S A +++ R P +F W P P+ + L + +
Sbjct: 183 GLADSFVNFRTGSGAALDAEVASSIRRGKPVLFYYWSPTPLLGKYKLIKLDEPAFDAEAW 242
Query: 222 G----------------EASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNN 265
A++ V +++ + P + + K + F + L N+ + + +
Sbjct: 243 KTLTDASNPNPRGTSSLAATLSIGVSAEFSKQYPELVSVFKGVDFPIDLLNKTLGEMSDK 302
Query: 266 KQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+D + V L+ HPD+ K W+ D + ++ +
Sbjct: 303 HEDAKVVAARFLKQHPDVWKAWVP-------ADVAERVSSGL 337
>gi|302187710|ref|ZP_07264383.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. syringae 642]
Length = 337
Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats.
Identities = 55/345 (15%), Positives = 111/345 (32%), Gaps = 46/345 (13%)
Query: 1 MY---KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M ++L L + A A+ P++F W + T + I+E+ GY T
Sbjct: 1 MKSITRLLGCSLLALSLLGQTATAAEKTKPIQFGALTWESGSLITEVLRTIVEKGYGYPT 60
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+ + +L I + W EEG + + + ++GA V
Sbjct: 61 DTLPGSTVSLETALAKNDIQVIAEEW-TGRSPVWVKAEEEGKVLGLGDIVKGATEGWWVP 119
Query: 118 DVGFA-----------LGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMI 159
+ +KS D+A+YK + G +
Sbjct: 120 EYVIKGDAAKGIKPLAPDLKSVADLARYKDVFKDPESPDKGRFLNSPSGWTSEIVNTQKL 179
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG-EEI 218
+ S A +++ R P +F W P P+ + L +
Sbjct: 180 KAYGLADSFVNFRTGSGAALDAEVASSIRRGKPVLFYYWSPTPLLGKYKLIKLDEPAFDA 239
Query: 219 SGFG----------------EASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI 262
+ A + V +++ + P + + K + F + L N+ + +
Sbjct: 240 EAWKTLTDASNPNPRGTSSLAAKLSIGVSAEFSKQYPELVSVFKGVDFPIDLLNKTLGEM 299
Query: 263 LNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ +D + V L+ HP++ K WL D + ++ +
Sbjct: 300 SDKHEDAKVVAARFLKQHPEVWKAWLP-------ADVAERVSSSL 337
>gi|254455936|ref|ZP_05069365.1| substrate-binding region of ABC-type glycine betaine transport
system [Candidatus Pelagibacter sp. HTCC7211]
gi|207082938|gb|EDZ60364.1| substrate-binding region of ABC-type glycine betaine transport
system [Candidatus Pelagibacter sp. HTCC7211]
Length = 314
Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats.
Identities = 43/312 (13%), Positives = 93/312 (29%), Gaps = 27/312 (8%)
Query: 1 MYKI--LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M KI L L ++ S + +ADS P+ W+ + I E +G
Sbjct: 1 MKKIISLISALVISVVSFAGISNADSKKPIVIPTHNWSSQIVMAYVIGGIFES-MGNNVK 59
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAEN----LQGAKYML 114
+ S++ + I W + K L++G + ++ L+ Y
Sbjct: 60 YVNADSQAVYESIRIGDVTISHEVWESAFGKSFTTALDKGGLLDWGDHEARTLEDMGYPN 119
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGN---------QRILDMINNNKFS 165
V + G G+ + + G I ++
Sbjct: 120 WVVEKGLCPGLPDWTALKNPDCAKNFTTPDSPDGKGRMLEGPQSWHGDLIPQRVDALGLG 179
Query: 166 LKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEP-----------HPINSDLNIHYLPG 214
+ A ++++ ++ + +W P G
Sbjct: 180 DLWWVKFAGGADALWAELAAAKKEGRGTIIFNWTPNFTDGAGFTFIDFPPYTAGCRPEDG 239
Query: 215 GEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGR 274
G+ G + + V D+ P+ + + K + FS + M L+ +K + +
Sbjct: 240 GDGKCGSPDGYLKKAVHEDFPKTHPDAAAVFKKMSFSTSHIGAMAALVDVDKMTHEDAAK 299
Query: 275 TMLRTHPDLLKN 286
L + + +
Sbjct: 300 KWLADNKSVWQA 311
>gi|257468379|ref|ZP_05632473.1| Substrate-binding region of ABC-type glycine betaine transport
system [Fusobacterium ulcerans ATCC 49185]
gi|317062652|ref|ZP_07927137.1| ABC transporter substrate-binding protein [Fusobacterium ulcerans
ATCC 49185]
gi|313688328|gb|EFS25163.1| ABC transporter substrate-binding protein [Fusobacterium ulcerans
ATCC 49185]
Length = 319
Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats.
Identities = 57/327 (17%), Positives = 113/327 (34%), Gaps = 27/327 (8%)
Query: 1 MYKILAVCLFLTTFSISY-ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M K + + ++++ + VRFAD GW A+ I+E GY +
Sbjct: 1 MKKKIFTFIITGFLTLAFLGCGGNDKKEVRFADAGWDSNKVHNAVAGFIIENAFGYTWSE 60
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ P+ ++K+ ID+ M W ++ + + + N + + V
Sbjct: 61 VPGSTPILHEAIKSGEIDVHMEEWTDNIPSYYPDLKAGL-FQELGTNFDDNRQGIYVPKY 119
Query: 120 ---GFALGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNNKFSLKGF 169
A +KS +D+ KYK+ +IYG PG E + + + +
Sbjct: 120 VIETMAPDLKSVKDLPKYKELFKDSENPEKGRIYGAIPGWEIDNIMYKKYEAYELNKDFV 179
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPG-GEEISGF------- 221
S+ A + P V WEP + + L + +
Sbjct: 180 YFRPGSDAALSAAFTAAYEKKEPIVGYYWEPTWLLGKYDFVLLEDEPYDAEKYFEGKTAC 239
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHP 281
V + + +K P I+ L S L +E + + + + +L+ +
Sbjct: 240 PSVKVTIGASNKFKEKAPEIAAFLSKYHTSSKLTSEALAHMQETGDNYNATAKWLLKNND 299
Query: 282 DLLKNWLIGVTTFDGQDPSRQLERFMN 308
+L+ WL D + + + +N
Sbjct: 300 NLIDQWLD-------ADKAAAVRKALN 319
>gi|307543714|ref|YP_003896193.1| ABC transporter periplasmic protein [Halomonas elongata DSM 2581]
gi|307215738|emb|CBV41008.1| ABC-type transport system periplasmic substrate-binding protein
[Halomonas elongata DSM 2581]
Length = 289
Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats.
Identities = 54/297 (18%), Positives = 109/297 (36%), Gaps = 11/297 (3%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M I ++ + L ++ AD + W++ A + + +LEE GY+ +
Sbjct: 1 MKSITSLLVALGALGVATTASADE--TLTIGTNNWSENIAVSHLWQQLLEER-GYRVELT 57
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ F +L + IDI + W P+ + ++ I + GA+ L V
Sbjct: 58 TTGKSIIFSALAQRDIDISLEVWLPNGDAQYLEPYQD-RIDVHDAWYHGAQDELVVPAYL 116
Query: 121 FALGIKSYQDIAK--YKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ ++ + I GIE G+ I + + +S A
Sbjct: 117 SDIDTMEDLKANASRFEYQGEPTIMGIESGSAIAGETETAIERYELPFRQLN---SSSPA 173
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+ + R P W+PH + ++ + EE G G+ + + + + ++
Sbjct: 174 MLASLEEAYRKEEPIAVTLWQPHWAYAQYDLKAIEDPEEAYGGGD-DIKWMSTAGFAEEH 232
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFD 295
P I+ +L S +++M I + + R + HP L++ WL D
Sbjct: 233 PEITDVLDGWYMSHGQLSDLMLTIEDVG-SPEEGVRRWIADHPALIEKWLGDFEDAD 288
>gi|71735933|ref|YP_276954.1| histidine transporter, periplasmic histidine-binding protein
[Pseudomonas syringae pv. phaseolicola 1448A]
gi|71556486|gb|AAZ35697.1| histidine transporter, periplasmic histidine-binding protein
[Pseudomonas syringae pv. phaseolicola 1448A]
gi|320326291|gb|EFW82344.1| histidine transporter, periplasmic histidine-binding protein
[Pseudomonas syringae pv. glycinea str. B076]
gi|320331709|gb|EFW87647.1| histidine transporter, periplasmic histidine-binding protein
[Pseudomonas syringae pv. glycinea str. race 4]
gi|330872450|gb|EGH06599.1| histidine transporter, periplasmic histidine-binding protein
[Pseudomonas syringae pv. glycinea str. race 4]
Length = 322
Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats.
Identities = 53/330 (16%), Positives = 106/330 (32%), Gaps = 33/330 (10%)
Query: 1 MYKILAVCLFLTTFSISYARD-----ADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M K L L S +S PV+FA W T + V+L++ G
Sbjct: 3 MKKALLTTLVSAGLLASAGASQAAGWCESGKPVKFAGLNWESAMLLTDILQVVLDKGYGC 62
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
+ +L I IF W + G + V + GA
Sbjct: 63 TVDALPGNSIAMENALSTNDIQIFAEEWV-GRSEVWNKAAAAGKVVGVGAPIVGAVEGWY 121
Query: 116 VNDV-----------GFALGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILD 157
V A +KS D+A+Y + Y G +
Sbjct: 122 VPRYVIEGDAKRKLEAKAPNLKSISDLAQYSAVFKDQEEPGKGRFYNCPAGWTCELENSE 181
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
M+ + K + A + I + P + W P P+ +++ L +
Sbjct: 182 MLKSYGLESKYTNFRPGTGPALDAAILSSYKRGEPILTYYWSPTPLMGQVDLVRLEE--K 239
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTML 277
+ V + D+ P + +L+ + + L N+ + + + + + + L
Sbjct: 240 AGVNKTIDIKVGVSKVFHDEAPELFAILEKVNLPIDLLNQNLGRMAKERIESPKLAKIFL 299
Query: 278 RTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ HP++ W+ +D +++++ +
Sbjct: 300 KEHPEVWHKWVS-------EDAAKKVDASL 322
>gi|254826450|ref|ZP_05231451.1| glycine betaine ABC transporter glycine betaine-binding protein
[Listeria monocytogenes FSL J1-194]
gi|254854215|ref|ZP_05243563.1| glycine betaine ABC transporter glycine betaine-binding protein
[Listeria monocytogenes FSL R2-503]
gi|254900816|ref|ZP_05260740.1| hypothetical protein LmonJ_13411 [Listeria monocytogenes J0161]
gi|284803337|ref|YP_003415201.1| putative glycine-betaine binding permease protein [Listeria
monocytogenes 08-5578]
gi|300766591|ref|ZP_07076511.1| glycine betaine ABC transporter glycine betaine-binding protein
[Listeria monocytogenes FSL N1-017]
gi|307069375|ref|YP_003877843.1| glycine-betaine binding permease [Listeria monocytogenes]
gi|258607608|gb|EEW20216.1| glycine betaine ABC transporter glycine betaine-binding protein
[Listeria monocytogenes FSL R2-503]
gi|284058899|gb|ADB69839.1| putative glycine-betaine binding permease protein [Listeria
monocytogenes 08-5578]
gi|293595691|gb|EFG03452.1| glycine betaine ABC transporter glycine betaine-binding protein
[Listeria monocytogenes FSL J1-194]
gi|300512698|gb|EFK39825.1| glycine betaine ABC transporter glycine betaine-binding protein
[Listeria monocytogenes FSL N1-017]
gi|306480645|emb|CBV37187.1| glycine-betaine binding permease protein [Listeria monocytogenes]
Length = 289
Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats.
Identities = 52/299 (17%), Positives = 111/299 (37%), Gaps = 20/299 (6%)
Query: 1 MYK---ILAVCLFLTTFSISY-------ARDADSCTPVRFADTGWTDIAATTAMTSVILE 50
M+K +L + F+ V A W A+T + + +L+
Sbjct: 1 MFKKMSLLVATVIGLLFTFGSEDSYKTTVGADSGGQTVTLATVNWESEIASTNVLAQVLK 60
Query: 51 EILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGA 110
E G+ I + + F S+ +D +G W P+ + A + + + NL+GA
Sbjct: 61 EA-GFNVQITTVDPAIMFSSVAEGQLDAMVGGWVPTTHQAYAEKYGDS-MVDLGANLEGA 118
Query: 111 KYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
L V + + E + I IEPG + + +L +
Sbjct: 119 ISALTVPTYMEDINSIT-----DLTDENDSTITAIEPGAGVTNSAQNAVKEYD-NLSDWE 172
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
+ +S A +++ + N V + W+PH + D ++ L E + G E +++
Sbjct: 173 VSVSSTGAMIAELDQAINNEEDIVVVGWKPHWMFMDYDLKMLDDPENVFGGYE-EIHSYA 231
Query: 231 RSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
R + P +++ N + V + +M+ + + + + + + + + WL
Sbjct: 232 REGLKEDNPEAYKIIDNFYWEVEDMSSVMEELATD-VEPEEAADNWIEANRETVDGWLE 289
>gi|331012048|gb|EGH92104.1| histidine transporter, periplasmic histidine-binding protein
[Pseudomonas syringae pv. tabaci ATCC 11528]
Length = 322
Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats.
Identities = 53/330 (16%), Positives = 106/330 (32%), Gaps = 33/330 (10%)
Query: 1 MYKILAVCLFLTTFSISYARD-----ADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M K L L S +S PV+FA W T + V+L++ G
Sbjct: 3 MKKALLTTLVSAGLLASAGASQAAGWCESGKPVKFAGLNWESAMLLTDILQVVLDKGYGC 62
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
+ +L I IF W + G + V + GA
Sbjct: 63 TVDALPGNSIAMENALSTNDIQIFAEEWV-GRSEVWNKAAAAGKVVGVGAPIVGAVEGWY 121
Query: 116 VNDV-----------GFALGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILD 157
V A +KS D+A+Y + Y G +
Sbjct: 122 VPRYVIEGDAKRKLEAKAPNLKSISDLAQYSAVFKDQEEPGKGRFYNCPAGWTCELENSE 181
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
M+ + K + A + I + P + W P P+ +++ L +
Sbjct: 182 MLKSYGLESKYTNFRPGTGPALDAAILSSYKRGEPILTYYWSPTPLMGQVDLVRLEE--K 239
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTML 277
+ V + D+ P + +L+ + + L N+ + + + + + + L
Sbjct: 240 AGVNKTIDIKVGVSKVFHDEAPELVAILEKVNLPIDLLNQNLGRMAKERIESPKLAKIFL 299
Query: 278 RTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ HP++ W+ +D +++++ +
Sbjct: 300 KEHPEVWHKWVS-------EDAAKKVDASL 322
>gi|18450327|ref|NP_569198.1| hypothetical protein pli0045 [Listeria innocua Clip11262]
gi|16415828|emb|CAC42043.1| Pseudogene, similar to glycine-betaine binding (ABC transporter)
[Listeria innocua Clip11262]
Length = 289
Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats.
Identities = 52/299 (17%), Positives = 112/299 (37%), Gaps = 20/299 (6%)
Query: 1 MYK---ILAVCLFLTTFSISY-------ARDADSCTPVRFADTGWTDIAATTAMTSVILE 50
M+K +L + F+ V A W A+T + + +L+
Sbjct: 1 MFKKMSLLVATVIGLLFTFGSEDSYKTTVGADSGGQTVTLATVNWESEIASTNVLAQVLK 60
Query: 51 EILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGA 110
E G+ I + + F S+ +D +G W P+ + A + + + NL+GA
Sbjct: 61 EA-GFNVQITTVDPAIMFSSVAEGQLDAMVGGWVPTTHQAYAEKYGDS-MVDLGANLEGA 118
Query: 111 KYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
L V + + E + I IEPG + + +L +
Sbjct: 119 ISALTVPTYMEDINSIT-----DLTDENDSTITAIEPGAGVTNSAQNAVKEYD-NLSDWE 172
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
+ +S A +++ + N V + W+PH + D ++ L E + G E +++
Sbjct: 173 VSVSSTGAMIAELDQAINNEEDIVVVGWKPHWMFMDYDLKMLDDPENVFGGYE-EIHSYA 231
Query: 231 RSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
R + P +++ N + V + +M+ + + + + + + +++ WL
Sbjct: 232 REGLKEDNPEAYKIIDNFYWEVEDMSSVMEELATD-VEPEEAADNWIEANREIVDGWLE 289
>gi|92115003|ref|YP_574931.1| substrate-binding region of ABC-type glycine betaine transport
system [Chromohalobacter salexigens DSM 3043]
gi|91798093|gb|ABE60232.1| Substrate-binding region of ABC-type glycine betaine transport
system [Chromohalobacter salexigens DSM 3043]
Length = 286
Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats.
Identities = 48/289 (16%), Positives = 94/289 (32%), Gaps = 7/289 (2%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
K L + + W + A M +ILE Y +
Sbjct: 1 MKTTLCSLAAAAIFTAATTAQAEDKTLVIGTNNWAENIAVANMWKLILENRYDYDVELSD 60
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
++ + L N DI + W P+ + + +++ +G L V
Sbjct: 61 VSKNALYSGLANSDFDISLEIWLPNTDARYLE-PYKDQLEINGAWYEGTGLGLVVPSYAD 119
Query: 122 ALGIKSYQDIAKYKK-ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
I ++ A+ + I GI+ G+ + I+ + +S A
Sbjct: 120 IDTIPELKEQAEEYGYQGSPSILGIDSGSAIAGLTDEAIDAYDL---PMEQVNSSGPAMM 176
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ + + P V W PH ++ ++ YL + + G E ++Y R + + P
Sbjct: 177 AALDAAYQQEEPIVVTLWSPHWAFAEYDLKYLEDPKNVYGDNE-TIYWFSRPGFTEDDPW 235
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
++ +L +M I D T + + DL+ WL
Sbjct: 236 LTEVLNAWHMDDDSLGGLMAEIEQAG-DPVEGAETWIEDNQDLIDEWLA 283
>gi|77465074|ref|YP_354577.1| ABC proline/glycine betaine transporter, periplasmic
substrate-binding protein [Rhodobacter sphaeroides
2.4.1]
gi|77389492|gb|ABA80676.1| ABC proline/glycine betaine transporter, periplasmic
substrate-binding protein [Rhodobacter sphaeroides
2.4.1]
Length = 333
Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats.
Identities = 47/321 (14%), Positives = 95/321 (29%), Gaps = 33/321 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDA--DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K LA +F+ A + C + A+ W + +ILEE G
Sbjct: 1 MTKRLASGCLAVSFAALAAPAWAAEDCGRISIAEMNWASAGVAAQVDKIILEEGFGCTVE 60
Query: 59 IKLLAVPVTFR-SLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAV 116
+ TF + D+ W ++ + +EEG + + A+ L G +
Sbjct: 61 LVAGDTMPTFTSMNEKGEPDMAPELWVNAVRTPLEAAVEEGRMVVAAQILKDGGVEGWWI 120
Query: 117 NDVGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
++ + ++ G ++
Sbjct: 121 PRYLAEAHPEIDSVEKALEHPDLFPAPEDASRGAVHNCPSGWNCQVSTENLFRALGAEDH 180
Query: 168 GFRLIE-ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIH---------------- 210
GF L++ S I + W P I ++
Sbjct: 181 GFDLVDTGSAAGLDGSIANAYEREAGWLGYYWAPTAILGKYDMVRLPFSVPHDKAAWDAC 240
Query: 211 ---YLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQ 267
E++ + + V+T V + +K +K +S +++ + ++
Sbjct: 241 TAVPDCADPEVNSYPVSEVFTAVTPSFAEKAGVAMDYVKARSWSNETVGQILAWMDESQA 300
Query: 268 DRQFVGRTMLRTHPDLLKNWL 288
+ L T+PDL + WL
Sbjct: 301 TNEDAAYHFLETYPDLWRAWL 321
>gi|332970889|gb|EGK09866.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Desmospora sp. 8437]
Length = 294
Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats.
Identities = 49/292 (16%), Positives = 111/292 (38%), Gaps = 10/292 (3%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCT-PVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
++ ++A L + +S ++ + + A + + ILEE GY+ +
Sbjct: 9 IFVVIAALLVGGIYLWGGKEGLESGKGTIKIGHNNYVENIAVSHLWKQILEEK-GYRVEL 67
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ + +D+ + W P + ++ ++L +G L V +
Sbjct: 68 TQTEKAPLWTGVAGGNMDMAVEVWLPHTDAPYYDQYKD-RVELHEPWYKGTALGLVVPEY 126
Query: 120 GFALGIKSYQDIAKYKKE--LGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
+ S + K + + I GI+PG I + ++LIE+SE
Sbjct: 127 MKDVETISDLNRYKDQFKRGGKPSIVGIDPGASLMGLTEKAIQSYDLD---YKLIESSEP 183
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDK 237
A S++ + P V W PH + + + YL +++ G + ++Y V R +
Sbjct: 184 AMLSELDSAYKKKEPVVVTLWNPHWVFNKYGLKYLKDTKKVYGEPD-TIYYVTRKGFKKD 242
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
P + + + N ++K + + + + + + H +L++ W
Sbjct: 243 QPEVVQWMDNWHMDDETLGALLKNM-EDADNPEQAVKQWMDDHRELIEEWTK 293
>gi|296278460|pdb|3L6G|A Chain A, Crystal Structure Of Lactococcal Opuac In Its Open
Conformat
gi|296278461|pdb|3L6H|A Chain A, Crystal Structure Of Lactococcal Opuac In Its
Closed-Ligande Conformation Complexed With Glycine
Betaine
Length = 256
Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats.
Identities = 51/266 (19%), Positives = 99/266 (37%), Gaps = 11/266 (4%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWY 84
V W A+ + + ++E G+ L V ++++ N D + W
Sbjct: 1 DKKVDLVYMNWDSEVASINVLTQAMKEH-GFDVKTTALDNAVAWQTVANGQADGMVSAWL 59
Query: 85 PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYG 144
P+ K + + L+ NL+GAK V + I + I G
Sbjct: 60 PNTHKTQWQKYGKS-VDLLGPNLKGAKVGFVVPSYM------NVNSIEDLTNQANKTITG 112
Query: 145 IEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPIN 204
IEPG +N+ +LK ++L+ +S A + + + V W PH +
Sbjct: 113 IEPGAGVMAASEKTLNSYD-NLKDWKLVPSSSGAMTVALGEAIKQHKDIVITGWSPHWMF 171
Query: 205 SDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILN 264
+ ++ YL + G E ++ T+VR + P ++L ++ +M I
Sbjct: 172 NKYDLKYLADPKGTMGTSE-NINTIVRKGLKKENPEAYKVLDKFNWTTKDMEAVMLDI-Q 229
Query: 265 NKQDRQFVGRTMLRTHPDLLKNWLIG 290
N + + + ++ H + W G
Sbjct: 230 NGKTPEEAAKNWIKDHQKEVDKWFKG 255
>gi|91225764|ref|ZP_01260793.1| hypothetical ABC transporter, substrate binding protein [Vibrio
alginolyticus 12G01]
gi|91189653|gb|EAS75928.1| hypothetical ABC transporter, substrate binding protein [Vibrio
alginolyticus 12G01]
Length = 331
Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats.
Identities = 50/319 (15%), Positives = 104/319 (32%), Gaps = 38/319 (11%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVT-FRSLKNKGIDI 78
+AD C + AD W + + +L E + T ++ D+
Sbjct: 20 ANADECGKITIADMNWNSASLMAHIDQFVLNEGYQCDAELIPGDSVPTGTSMIEKGQPDV 79
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVNDVGFALG---------IKSY 128
W +++ + + + +++ +E+L G + V IK
Sbjct: 80 APELWTNGIKEALDKGIADKRLRIASESLVNGGEEGFWVPAYLVKQYPELATIEGVIKHA 139
Query: 129 QDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI-EASELASFSQIRRDQ 187
+ + + Y G + N S GF ++ S A I +
Sbjct: 140 KLFEHPEDDDKFAFYSCPAGWTCQITSGHLFNALGLSEHGFEMVDPGSGAALAGTIAKAY 199
Query: 188 RNNIPAVFLSWEPHPINSDLNIHYLPGG-------------------EEISGFGEASVYT 228
+P W P P+ ++ + G +++ + + V T
Sbjct: 200 DRKMPWFGYYWSPTPVLGKYDMVKVDFGSGTDLEEYRNCTTQPDCASPKVTMYPPSPVRT 259
Query: 229 VVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
V + K P L+ F+ +EM+ + +N D + T+PDL K W+
Sbjct: 260 VTTEAFASKEPQAFAYLQKRGFTNEQMSEMLAWMEDNYADGEEAMFYFFNTYPDLWKGWV 319
Query: 289 IGVTTFDGQDPSRQLERFM 307
+D + ++E+ +
Sbjct: 320 S-------EDVAVRIEKAL 331
>gi|188587233|ref|YP_001918778.1| Substrate-binding region of ABC-type glycine betaine transport
system [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179351920|gb|ACB86190.1| Substrate-binding region of ABC-type glycine betaine transport
system [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 310
Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats.
Identities = 51/261 (19%), Positives = 107/261 (40%), Gaps = 7/261 (2%)
Query: 28 VRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSL 87
++ A W A + + + ILE+ +GY + + + + + N D+ + W+P
Sbjct: 56 IKIAHGDWACATAKSYLVAAILEQEMGYDVELTQAELGMIYTDMANGNQDLNIAGWFPVT 115
Query: 88 EKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEP 147
+ I ++ +GA+ L V + I S ++ ++ ++ +I GI+
Sbjct: 116 HAEYYEEYGD-EIDKISTVYEGARIGLVVPEYV---DIDSIDEMGEHHEKFDGQIVGIDS 171
Query: 148 GNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDL 207
G Q + + SL F L+ +SE + +++R + V W PH D
Sbjct: 172 GAGIMQTTDEALEVYD-SLADFDLMASSEASMVTELRSAIEDEEWVVVTGWTPHWKFGDW 230
Query: 208 NIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQ 267
+ +L E + G E + + R+ + D P + L+N E+M +I ++
Sbjct: 231 ELEFLEDPEGVYGEAEY-IEALSRAGFEDDAPEVVEFLENFYVGDEELGELMGMIDDSG- 288
Query: 268 DRQFVGRTMLRTHPDLLKNWL 288
D + + D++ W+
Sbjct: 289 DEMGSSIEWIEDNQDIVDEWV 309
>gi|330982274|gb|EGH80377.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. aptata str. DSM 50252]
Length = 322
Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats.
Identities = 53/330 (16%), Positives = 106/330 (32%), Gaps = 33/330 (10%)
Query: 1 MYKILAVCLFLTTFSISYARD-----ADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M K L L S +S PV+FA W T + V+L++ G
Sbjct: 3 MKKALLTTLVSAGLLASAGASQAAGWCESGKPVKFAGLNWESAMLLTDILQVVLDKGYGC 62
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
+ +L I IF W + G + V + GA
Sbjct: 63 TVDALPGNSIAMENALGTNDIQIFTEEWV-GRSEVWNKAAAAGKVVGVGAPIVGAVEGWY 121
Query: 116 VNDV-----------GFALGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILD 157
V A +KS D+A+Y + Y G +
Sbjct: 122 VPRYVIEGDAKRKLEAKAPNLKSISDLAQYSAVFKDQEEPGKGRFYNCPAGWTCELENSE 181
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
M+ + K + A + I + P + W P P+ +++ L +
Sbjct: 182 MLKSYGLESKYTNFRPGTGPALDAAILSSYKRGEPILTYYWSPTPLMGQVDLVRLEE--K 239
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTML 277
+ V + D+ P + +L+ + + L N+ + + + + + + L
Sbjct: 240 AGVNKTIDIKVGVSKVFHDEAPELVAILEKVNLPIDLLNQNLGRMAKERIESPKLAKIFL 299
Query: 278 RTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ HP++ W+ +D +++++ +
Sbjct: 300 KEHPEVWHKWVS-------EDAAKKVDASL 322
>gi|269104888|ref|ZP_06157584.1| hypothetical ABC transporter substrate binding protein
[Photobacterium damselae subsp. damselae CIP 102761]
gi|268161528|gb|EEZ40025.1| hypothetical ABC transporter substrate binding protein
[Photobacterium damselae subsp. damselae CIP 102761]
Length = 333
Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats.
Identities = 51/340 (15%), Positives = 100/340 (29%), Gaps = 39/340 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K LAV L + A+ A+ C V AD W + + +L G +
Sbjct: 1 MRKTLAVLLLSSLGFSLQAQ-ANECGKVTIADMNWNSASFLANLDQFVLNNAFGCSAELV 59
Query: 61 LLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAVND 118
T ++ DI +W S++ + +E+ ++L+ G V
Sbjct: 60 PGDTMPTGTSMIEKGEPDIAPEFWSNSMKAALDRGVEDKRLRLIGGPFADGGVEGFWVPA 119
Query: 119 VGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
K + A + + + Y G ++ K GF
Sbjct: 120 YMVEKDPSLATIAGIKKHAKLFAHPEDQSKSAFYTCPSGWNCQISAGNIFRALKLKQAGF 179
Query: 170 RLI-EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHY----------------- 211
L+ S I + P W P + +
Sbjct: 180 ELVDPGSGAGLAGSIAKAYERQQPWFGYYWAPTAVLGKYKMVKVDFDSGTDPEYFKSCLT 239
Query: 212 --LPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDR 269
+ S + + V TV+ + +K + + L+ + NE++ + N+ D
Sbjct: 240 QDTCLDPKPSMYPTSQVDTVITESFANKAGDALKYLQQRALTNEQMNELLAWMEENQADG 299
Query: 270 QFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMNN 309
+ L + W + +L++ + N
Sbjct: 300 EIAMEHFLTDYESTWTTWFTPAQ-------ATKLKQALKN 332
>gi|312960522|ref|ZP_07775029.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas fluorescens WH6]
gi|311285256|gb|EFQ63830.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas fluorescens WH6]
Length = 338
Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats.
Identities = 54/343 (15%), Positives = 109/343 (31%), Gaps = 43/343 (12%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+ +LA L + SI+ + + PV FAD W + T + VI+E+ T+
Sbjct: 4 LKTLLAASLTALSLSIASLPVSAAQAPVHFADLNWESGSLITEILRVIVEKGYDLPTDTL 63
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+L I + W EG + + + ++GA V +
Sbjct: 64 PGTTITLETALAKNDIQVIGEEWA-GRSPVWVKAEAEGKVVGLGDTVKGATEGWWVPEYV 122
Query: 121 FA-----------LGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNN 162
+ S +D+A+YK + G +
Sbjct: 123 VKGDAAKGIKPLAPDLASVKDLARYKDVFKDPESPGKGRFLNSPIGWTSEVVNKQKLKAY 182
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLN-------------I 209
S A ++I R P +F W P P+
Sbjct: 183 GLEDSYVNFRSGSGAALDAEIASSIRRGKPVLFYYWSPTPLMGRYKLIQLQEPPFDAEAW 242
Query: 210 HYLPGGEEISGFG----EASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNN 265
L + + + V + + + P I+ + + ++F + N+ + + N
Sbjct: 243 KTLTDADNPDPKPTRSLASKLSIGVSTPFQKEHPQIAAIFEKVEFPIEPLNKALATMSEN 302
Query: 266 KQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
+ V + ++ HP++ K WL +D + ++E +
Sbjct: 303 HTPAREVAQAFMKEHPEVWKAWLT-------EDVAGKVEASLK 338
>gi|114769692|ref|ZP_01447302.1| ABC proline/glycine betaine transporter, periplasmic
substrate-binding protein [alpha proteobacterium
HTCC2255]
gi|114549397|gb|EAU52279.1| ABC proline/glycine betaine transporter, periplasmic
substrate-binding protein [alpha proteobacterium
HTCC2255]
Length = 335
Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats.
Identities = 41/341 (12%), Positives = 89/341 (26%), Gaps = 41/341 (12%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+ K L T + + C V+ A+ W + +ILE G +
Sbjct: 2 IKKSLTNLAIAATLATAGTAAFADCGDVQIAEMNWASAELMANVDKIILENGYGCNVELV 61
Query: 61 LLAVPVTF-RSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAEN-LQGAKYMLAVND 118
A +F + D+ W ++ + ++EG + + V
Sbjct: 62 PGATMTSFASMNEKGQPDVAPELWINAVRDPLNAAMDEGRLHSTNAGPITQLGEGWWVTP 121
Query: 119 VGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
A ++ + G G ++ KG+
Sbjct: 122 AFQAAHPELDTVVKILERPDLFPDAEDPSKGAFIGCPAGWGCQLANANLFRAFDMEAKGW 181
Query: 170 RLI-EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDL--------------------- 207
L+ S I + W P +
Sbjct: 182 TLVDPGSAAGLDGSIAKAGDRGENWFGYYWSPTAMVGKYGLIPIDFGVPFAGTDNWDGCI 241
Query: 208 -NIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNK 266
+ S + + V+T++ +K L+ + + N M+ + +
Sbjct: 242 VKAEQDCADPQASAWTVSEVHTIITDSLKNKGGIAVDYLEARTYPGPIMNAMLVYMGEEQ 301
Query: 267 QDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ L H DL +W+ D + +++ +
Sbjct: 302 AGGEDAAIEFLMQHEDLWSSWVS-------ADAAAKIKAGL 335
>gi|66048053|ref|YP_237894.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. syringae B728a]
gi|63258760|gb|AAY39856.1| Substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. syringae B728a]
gi|330972983|gb|EGH73049.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. aceris str. M302273PT]
Length = 322
Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats.
Identities = 54/330 (16%), Positives = 106/330 (32%), Gaps = 33/330 (10%)
Query: 1 MYKILAVCLFLTTFSISYARD-----ADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M K L L S +S PV+FA W T + VIL++ G
Sbjct: 3 MKKALLTTLVSAGLLASAGASQAAGWCESGKPVKFAGLNWESAMLLTDVLQVILDKGYGC 62
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
+ +L I IF W + G + V + GA
Sbjct: 63 TVDALPGNSIAMENALGTNDIQIFAEEWV-GRSEVWNKAAAAGKVVGVGAPIVGAVEGWY 121
Query: 116 VNDV-----------GFALGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILD 157
V A +KS D+A+Y + Y G +
Sbjct: 122 VPRYVIEGDAKRKLEAKAPNLKSISDLAQYSAVFKDQEEPGKGRFYNCPAGWTCELENSE 181
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
M+ + K + A + I + P + W P P+ +++ L +
Sbjct: 182 MLKSYGLESKYTNFRPGTGPALDAAILSSYKRGEPILTYYWSPTPLMGQVDLVRLEE--K 239
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTML 277
+ V + D+ P + +L+ + + L N+ + + + + + + L
Sbjct: 240 AGVNKTIDIKVGVSKVFHDEAPELVAILEKVNLPIDLLNQNLGRMAKERIESPKLAKIFL 299
Query: 278 RTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ HP++ W+ +D +++++ +
Sbjct: 300 KEHPEVWHKWVS-------EDAAKKVDASL 322
>gi|323487142|ref|ZP_08092449.1| ABC transporter permease [Clostridium symbiosum WAL-14163]
gi|323399545|gb|EGA91936.1| ABC transporter permease [Clostridium symbiosum WAL-14163]
Length = 625
Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats.
Identities = 65/338 (19%), Positives = 110/338 (32%), Gaps = 39/338 (11%)
Query: 1 MYK---ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M K I+AV + T A + + FAD GW + A+ ++ E GY
Sbjct: 1 MKKKRTIVAVLAMVLTLGAGLAGCSTKSREIAFADVGWDSVKFHNAVAGLVAESAFGYTW 60
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+ P+ +LKN ID+ M W +L + K + N V
Sbjct: 61 KEMPGSSPIMHEALKNGEIDVNMEEWTDNLSTYYEDRDAGL-FKDLGTNFGDNIQGFYVP 119
Query: 118 DVGFA-----------LGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMI 159
G+K+ QD+ KY +IYG PG E N+ + +
Sbjct: 120 RYVIEGDPERGIEPMAPGLKTVQDLKKYADVFPDDEKPGMGRIYGAIPGWEINEIMQKKV 179
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
N + S+ A + P V WEP + ++ L +
Sbjct: 180 KFNGLDSQYNYFQPGSDAALSAAFTSAFEKGEPIVGYYWEPTWLTGKYDMVLLEDYPYVD 239
Query: 220 GF---------GEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI-LNNKQDR 269
V V + + ++ P L+ + S AL +E + + N
Sbjct: 240 LEKYKAGETACPSVDVTVGVSNQFYEEEPEFCEFLEKYETSSALTSEALAYMQDNEGVTY 299
Query: 270 QFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ L H +L+ WL +D + + +
Sbjct: 300 TDTAKWFLTEHSELIDQWLP-------EDKAEDVRGAL 330
>gi|114567253|ref|YP_754407.1| ABC transporter substrate-binding protein [Syntrophomonas wolfei
subsp. wolfei str. Goettingen]
gi|114338188|gb|ABI69036.1| ABC transporter substrate-binding protein [Syntrophomonas wolfei
subsp. wolfei str. Goettingen]
Length = 340
Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats.
Identities = 47/321 (14%), Positives = 96/321 (29%), Gaps = 37/321 (11%)
Query: 17 SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGY-KTNIKLLAVPVTFRSLKNKG 75
S ++D + D W I + IL+ GY + + +
Sbjct: 23 SGSQDGSDKPRLVLVDVSWDSIKVHNRIVGYILQHGYGYPEPEYLFAETLPALQGMVKGN 82
Query: 76 IDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA-----------LG 124
IDI+M W ++E+ L G +K + N A V
Sbjct: 83 IDIYMEVWADNIEEAWKEALASGKVKNLGPNFPDAPQGWYVPTYMIEGDAERGIEATAPD 142
Query: 125 IKSYQDIAKYKKELGAK-------IYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
+K D+ +Y + + + PG I + I S+
Sbjct: 143 LKKISDLPRYWELFKDREVPSKGRFHNSPPGWSCTSINGIKIKSYGLDKNYNNFITGSDP 202
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINS-----------DLNIHYLPGGEEISGFGEASV 226
A + + P WEP + + + + A V
Sbjct: 203 ALVASMVSAYEKGEPWFGYYWEPTWVMGKLKMTRLEEPDFDDAVWQDESNRACSYPSAQV 262
Query: 227 YTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKN 286
+ S+ + P + L+ + S+ NE + + ++ D + L+ + D
Sbjct: 263 LIGINSELEKRAPEVVEFLQKYETSLEQNNEFLAYMSDHNNDEKAAAVYFLQKYKDEWHG 322
Query: 287 WLIGVTTFDGQDPSRQLERFM 307
W+ D + ++++ +
Sbjct: 323 WVP-------ADVAARVDQAL 336
>gi|332885226|gb|EGK05477.1| hypothetical protein HMPREF9456_02678 [Dysgonomonas mossii DSM
22836]
Length = 272
Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats.
Identities = 52/281 (18%), Positives = 107/281 (38%), Gaps = 12/281 (4%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M KI+ + L + + + + V W + A T + V+LE GY +K
Sbjct: 1 MNKIICILLSVLLLG-ATSCEPRHKQDVLILYPNWAEGIAITYLAKVMLENK-GYTVTLK 58
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ + +L DI+M W P +K + ++ L V
Sbjct: 59 RIEPGPIYTALSRGDADIYMDAWLPHTQKDYWAKY-GHKLDVLGTIFDDGITGLVVPAYV 117
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
I+S +++ + K + KIYGI G + I + I +SE +
Sbjct: 118 ---NIESIEELNENKDKFDKKIYGIAAGAGIHANTEKAIKAYNLD---YSQISSSETSMI 171
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ +++ +N V W+PH + ++ + L + + ++ + R + + P+
Sbjct: 172 TALKKADKNKEWIVITGWKPHFMWTEFELKKLSDPKG--IYPTDNIQVISRRGFKEDKPD 229
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHP 281
I+ ++ K L +E++ + +D Q + HP
Sbjct: 230 IAAFFESFKLDDKLLHELIIDVSM-HKDPQVGAKVFFEKHP 269
>gi|241205097|ref|YP_002976193.1| Substrate-binding region of ABC-type glycine betaine transport
system [Rhizobium leguminosarum bv. trifolii WSM1325]
gi|240858987|gb|ACS56654.1| Substrate-binding region of ABC-type glycine betaine transport
system [Rhizobium leguminosarum bv. trifolii WSM1325]
Length = 331
Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats.
Identities = 56/338 (16%), Positives = 103/338 (30%), Gaps = 38/338 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M L +F SI +A C V A+ W + +ILE+ G I
Sbjct: 1 MKTFLIPAVFAAALSIVAPAEAAECGSVSIAEMKWASAGIAASFDKIILEKGYGCSVTIV 60
Query: 61 LLAVPVTF-RSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVND 118
TF + DI YW S+ + + G + AE L GA +
Sbjct: 61 DGDTLPTFASMNEKGTPDIASEYWINSVRSLLDQAVNSGRLVQGAEILADGAVEGWWIPK 120
Query: 119 VGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
+K + +Y ++ KGF
Sbjct: 121 FIADAHPDIRSVEGALKHPELFPAEDDPSKGAVYNCPADWSCQISTTNLFKALAADKKGF 180
Query: 170 RLIE-ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISG-------- 220
L+E S + I R N + + W P I ++ L G +
Sbjct: 181 ELVETGSPEQLDASIARAFENKVGWLGYYWAPTAILGKYDMTRLSFGVGHNKNEWDRCTA 240
Query: 221 -----------FGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDR 269
+ + +T++ + + ++ LK K+ A N+++ N++
Sbjct: 241 VAGCARPELNSYPVSRAFTLMTRSFASRTGPVTTYLKTRKWDNATINQVLAWQDENRETN 300
Query: 270 QFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ LR + L W+ D + +++ +
Sbjct: 301 EDAAIYFLRNYESLWTKWVP-------VDVAEKVKASL 331
>gi|237802268|ref|ZP_04590729.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331025125|gb|EGI05181.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 322
Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats.
Identities = 53/330 (16%), Positives = 106/330 (32%), Gaps = 33/330 (10%)
Query: 1 MYKILAVCLFLTTFSISYARD-----ADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M K L L S +S PV+FA W T + V+L++ G
Sbjct: 3 MKKALLTTLVSAGLLASAGASQAAGWCESGKPVKFAGLNWESAMLLTDILQVVLDKGYGC 62
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
+ +L I IF W + G + V + GA
Sbjct: 63 TVDALPGNSIAMENALGTNDIQIFAEEWV-GRSEVWNKAAAAGKVVGVGAPIVGAVEGWY 121
Query: 116 VNDV-----------GFALGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILD 157
V A +KS D+A+Y + Y G +
Sbjct: 122 VPRYVIEGDAKRKLEAKAPNLKSISDLAQYSAVFKDQEEPGKGRFYNCPAGWTCELENSE 181
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
M+ + K + A + I + P + W P P+ +++ L
Sbjct: 182 MLKSYGLEGKYTNFRPGTGPALDAAILSSYKRGEPILTYYWSPTPLMGQVDLVRLEEKPG 241
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTML 277
+ + V + D+ P + +L+ + + L N+ + + + + + + L
Sbjct: 242 V--NKTIDIKVGVSKVFHDEAPELVAVLEKVNLPIDLLNQNLGRMAKERIESPKLAKIFL 299
Query: 278 RTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ HP++ W+ +D +++++ +
Sbjct: 300 KEHPEIWHKWVS-------EDAAKKVDASL 322
>gi|187918022|ref|YP_001883585.1| glycine betaine-binding protein [Borrelia hermsii DAH]
gi|119860870|gb|AAX16665.1| glycine betaine-binding protein [Borrelia hermsii DAH]
Length = 299
Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats.
Identities = 48/297 (16%), Positives = 105/297 (35%), Gaps = 16/297 (5%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCT---------PVRFADTGWTDIAATTAMTSVILEE 51
M +L ++ D+ V+ A W T + V+ E
Sbjct: 1 MKGLLISVFISFILTLFSCDKDDNFKDSGDLQRLRSVKIAYVNWIGETVATNIMKVVFE- 59
Query: 52 ILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAK 111
+GY I + + ++ L + +D + W P+ +KF + + N +G
Sbjct: 60 RIGYNVEILPVTASIMYQYLASGQVDGMVSAWIPTADKFYYEK-FKDKFVDLGANYEGTL 118
Query: 112 YMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
V I S ++ + ++ GI+ G + + + + + L
Sbjct: 119 QGFVVPSYVK---ISSIAELKGRGAKFKNRMVGIDAGAGTQLSVEETLKHYGLDK-EYEL 174
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVR 231
I +SE + + + + + W+PH + +I +L +S G +++++VR
Sbjct: 175 ISSSESVMLASLESAIKRHEWILVPLWKPHWAFTKYDIKFLDDPL-LSMGGPENIHSLVR 233
Query: 232 SDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+ P+ L N + L +++ + TH + +KNW+
Sbjct: 234 IGLKEADPDAYYLFDNFYWGDDLLLPLIEKNYKEPGQEYRNAVEFVDTHKEYVKNWV 290
>gi|323490331|ref|ZP_08095546.1| glycine betaine ABC transporter substrate-binding protein
[Planococcus donghaensis MPA1U2]
gi|323396001|gb|EGA88832.1| glycine betaine ABC transporter substrate-binding protein
[Planococcus donghaensis MPA1U2]
Length = 290
Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats.
Identities = 57/299 (19%), Positives = 113/299 (37%), Gaps = 22/299 (7%)
Query: 1 MYKILAVCLFLTTFSISYARDAD-----------SCTPVRFADTGWTDIAATTAMTSVIL 49
M K L + + ++ A +D + F T WT T + +IL
Sbjct: 1 MKKFLFLVMLALLATVLVACGSDNEEANGESEEAEQKTITFGVTPWTSTVPPTKVAGLIL 60
Query: 50 EEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQG 109
++ +GY+ + L +D+FM W P + ++ Y E +I ++ +
Sbjct: 61 KD-MGYEIVETSADAGSVYTGLSRGDLDVFMDAWVPIHQTYLDKY--EDNISSISVSYPD 117
Query: 110 AKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
+ V I + +D+ + E G K YGIE G +++ +F
Sbjct: 118 GETGWTVPAYMED--INTLEDLKGSEDEFGNKFYGIEAGAGATLESNEILEAYEFD---M 172
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV 229
+ +SE +Q ++ + P VF W PH + + ++ L + +SV +
Sbjct: 173 TQVNSSEGGMMAQAQKMMADEEPVVFYGWRPHTMFNKFDLKVLTNDKGFFE--TSSVEVI 230
Query: 230 VRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
++ + P L N S+ +M+ I + D + V + + + D + L
Sbjct: 231 TNNELEENAPEAYEFLSNWSISIDDVEDMIVKI-EDGGDPEEVAQEWIDNNQDKVDEML 288
>gi|295703659|ref|YP_003596734.1| glycine/betaine ABC transporter glycine/betaine- binding protein
OpuAC [Bacillus megaterium DSM 319]
gi|294801318|gb|ADF38384.1| glycine/betaine ABC transporter, glycine/betaine- binding protein
OpuAC [Bacillus megaterium DSM 319]
Length = 293
Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats.
Identities = 62/290 (21%), Positives = 110/290 (37%), Gaps = 8/290 (2%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M I+ + L + + A + + W + A T + +LEE GYK
Sbjct: 11 MLTIVIMLLVSACGNSNTASSTTTKKEITIGYIPWDEAVAVTFLWKELLEEK-GYKVKAV 69
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
V F + ID+F+ W P+ + + ++ A LAV D
Sbjct: 70 QSDVAPLFSGVAQGNIDLFLDVWMPTTHSSYMKRFGK-QVDVLGTWYDQADSGLAVPDYV 128
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+S D+ K E KI IEPG+ N D + LK + L+E+S A
Sbjct: 129 ---DAQSLADLKNKKGEFNGKIISIEPGSGINGLTKDHA-MPSYELKDWNLVESSTAAML 184
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF-GEASVYTVVRSDYLDKCP 239
S++ + N P V W PH N+ YL + G + ++ + + + P
Sbjct: 185 SELDKAIANKEPIVVTLWRPHWAFEKYNLRYLKDPKNTMNPTGPEKIQSISKKAFKEDYP 244
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
++ LK+ S + I N+ +D + + + + ++W+
Sbjct: 245 EAAKWLKDFSISADQLASLESEI-NSAKDETKGVKNWISKNKKVTESWVK 293
>gi|126464526|ref|YP_001045639.1| substrate-binding region of ABC-type glycine betaine transport
system [Rhodobacter sphaeroides ATCC 17029]
gi|332560671|ref|ZP_08414989.1| substrate-binding region of ABC-type glycine betaine transport
system [Rhodobacter sphaeroides WS8N]
gi|126106337|gb|ABN78867.1| Substrate-binding region of ABC-type glycine betaine transport
system [Rhodobacter sphaeroides ATCC 17029]
gi|332274469|gb|EGJ19785.1| substrate-binding region of ABC-type glycine betaine transport
system [Rhodobacter sphaeroides WS8N]
Length = 333
Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats.
Identities = 47/321 (14%), Positives = 94/321 (29%), Gaps = 33/321 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDA--DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K LA +F A + C + A+ W + +ILEE G
Sbjct: 1 MTKRLASGCLAVSFVALAAPAWAAEDCGRISIAEMNWASAGVAAQVDKIILEEGFGCTVE 60
Query: 59 IKLLAVPVTFR-SLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAV 116
+ TF + D+ W ++ + +EEG + + A+ L G +
Sbjct: 61 LVAGDTMPTFTSMNEKGEPDMAPELWVNAVRTPLEAAVEEGRMVVAAQILKDGGVEGWWI 120
Query: 117 NDVGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
++ + ++ G ++
Sbjct: 121 PRYLAEAHPEIDSVEKALEHPDLFPAPEDASRGAVHNCPSGWNCQVSTENLFRALDAEDH 180
Query: 168 GFRLIE-ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIH---------------- 210
GF L++ S I + W P I ++
Sbjct: 181 GFDLVDTGSAAGLDGSIANAYEREAGWLGYYWAPTAILGKYDMVRLPFSVPHDKAAWDAC 240
Query: 211 ---YLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQ 267
E++ + + V+T V + +K +K +S +++ + ++
Sbjct: 241 TAVPDCADPEVNSYPVSEVFTAVTPSFAEKAGVAMDYVKARSWSNETVGQILAWMDESQA 300
Query: 268 DRQFVGRTMLRTHPDLLKNWL 288
+ L T+PDL + WL
Sbjct: 301 TNEDAAYHFLETYPDLWRAWL 321
>gi|190892188|ref|YP_001978730.1| amino acid ABC transporter substrate-binding protein [Rhizobium
etli CIAT 652]
gi|190697467|gb|ACE91552.1| putative amino acid ABC transporter, substrate-binding protein
[Rhizobium etli CIAT 652]
Length = 334
Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats.
Identities = 55/339 (16%), Positives = 105/339 (30%), Gaps = 39/339 (11%)
Query: 1 MYKILAVCLFLTTFSISYAR-DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M ++L +F + A +A C V A+ W +ILE+ G +I
Sbjct: 3 MKRLLVPAVFAAALFTTVAAVEAAECGRVSIAEMKWASAGIAANFDKIILEKGYGCSVSI 62
Query: 60 KLLAVPVTF-RSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVN 117
TF + DI YW S+ +A + G + AE L GA +
Sbjct: 63 VDGDTLPTFASMNEKGTPDIASEYWINSVRALLAQAVNAGRLVQGAEILADGAVEGWWIP 122
Query: 118 DVGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
++ +Y ++ KG
Sbjct: 123 KFIADANPDIRSVEDALRRPDLFPAEDDASKGAVYNCPADWSCQISTTNLFKALAADKKG 182
Query: 169 FRLIE-ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISG------- 220
F L+E S + I R N I + W P I ++ L G +
Sbjct: 183 FELVETGSPERLDASIARAFDNKIGWLGYYWAPTAILGKYDMTRLSFGVGHNKTEWDRCT 242
Query: 221 ------------FGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQD 268
+ + +T++ + + ++ LK+ K+ N+++ N++
Sbjct: 243 AVAGCVRPQLNSYPVSRAFTLMTRSFASRAGPVTAYLKSRKWDNETINQVLAWQDENRES 302
Query: 269 RQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ LR + L W+ D + +++ +
Sbjct: 303 NEDAAIYFLRNYESLWMRWVPL-------DVAEKVKASL 334
>gi|163857622|ref|YP_001631920.1| putative glycine betaine/choline/proline transport system
substrate-binding protein [Bordetella petrii DSM 12804]
gi|163261350|emb|CAP43652.1| putative glycine betaine/choline/proline transport system
substrate-binding protein [Bordetella petrii]
Length = 333
Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats.
Identities = 50/322 (15%), Positives = 103/322 (31%), Gaps = 37/322 (11%)
Query: 15 SISYARDADSCT---PVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSL 71
+ A DA C V+F W + I+E+ G KT +L
Sbjct: 20 GTAQAADAPQCELDRAVKFGGMNWESNLVLVDIERFIMEKGYGCKTETLPTETLPALAAL 79
Query: 72 KNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA--LGIKSYQ 129
+ +DI W S+ + G +K + + G + +KS
Sbjct: 80 ERGDLDINTEIWLNSVSAPWDKAEKTGKVKRIGDVYMGG-EAWFIPRYTAERLPELKSAA 138
Query: 130 DIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
D+ K+K E + YG G ++ + K + A +
Sbjct: 139 DLPKFKDEFKDPEEPSKGRFYGCPAGWGCEVVSTNLFHALKLDDTYTLYSPGTGAAQKAA 198
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI-----------------SGFGEAS 225
+ + VF W P P+ L++ L S + E
Sbjct: 199 LMSAYKRKQNVVFYYWYPTPLVGALDLVKLELPPYDAEKHKCLTAPKCANPQPSAYPENP 258
Query: 226 VYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLK 285
V+T V +++ + P ++ L + + ++ + + + D V + L+ D+
Sbjct: 259 VFTAVNTEFSKQAPKLTEFLSKVSIPLPEVDQTLAHMEESGDDSSAVAQWFLKNKSDVWT 318
Query: 286 NWLIGVTTFDGQDPSRQLERFM 307
W+ + + +++ +
Sbjct: 319 KWVP-------AEVATRVQAAL 333
>gi|186471607|ref|YP_001862925.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia phymatum STM815]
gi|184197916|gb|ACC75879.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia phymatum STM815]
Length = 293
Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats.
Identities = 64/292 (21%), Positives = 108/292 (36%), Gaps = 9/292 (3%)
Query: 1 MYKILAVCLFLTT--FSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
++K L L ++T + A A + P++ A T W D+ A + LE L
Sbjct: 5 LFKSLVAKLAVSTVVAMSAGAGHALAAEPIKMAVTNWADVLAVANVAKYALETSLKQPVQ 64
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ + ++ + +DI +G W P + ++ V G K AV
Sbjct: 65 FVQADIGIQYQGVARGDLDIMVGGWLPVTHGAYY-ARYKNDMEDVGVIYTGGKNGWAVPA 123
Query: 119 VGFALGIKSYQDI--AKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ + D+ K +L I GIEPG Q I + G+ L +SE
Sbjct: 124 YIPESQVATISDLEKPDVKSKLNGTIQGIEPGGGLMQASEKAIKAYDLN--GYNLQSSSE 181
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
+ + R ++ V W PH + + YL + G GE V+ +
Sbjct: 182 AGMLAGVSRAYQSKQWIVATVWSPHWLFQKWQMRYLKDPKGTLG-GEEQVHAFASKQFAT 240
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
K P K+ K ++A + N+ D + + HP+ LK WL
Sbjct: 241 KFPRADVFFKHFKLTLADVEAIEFE-GNSTNDYATAAKKFVDAHPEKLKAWL 291
>gi|327439296|dbj|BAK15661.1| ABC-type proline/glycine betaine transport systems, periplasmic
component [Solibacillus silvestris StLB046]
Length = 295
Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats.
Identities = 57/273 (20%), Positives = 107/273 (39%), Gaps = 11/273 (4%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
+ + A W A+T + + +LE +GY +I L + + ++ D
Sbjct: 33 SSKEDLGSIELAYVEWDSEVASTYVVAEVLES-VGYNVDITPLDNAIMWEAVSKGEADAM 91
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
+ W P+ ++ + NLQGAK L V A IA E
Sbjct: 92 VSGWLPATHASQYEKYGA-DVEDLGPNLQGAKIGLVVPSYMEA------TSIADLSTEAA 144
Query: 140 AKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWE 199
+ I GIE G + +L+ + L +S A + + +N V W
Sbjct: 145 STITGIEAGAGVVAAAERALETYP-NLESWSLQPSSSGAMTVALEQAIKNEEDIVVTGWS 203
Query: 200 PHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMM 259
PH ++ ++ YL E + G GE S++T VR + + P+ ++L +++ E+M
Sbjct: 204 PHWKFANYDLKYLEDPEGVFG-GEESIHTFVRQNLEKESPDAFKILDAFEWTTEDIEEVM 262
Query: 260 KLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVT 292
I + + + + + D++ W G+
Sbjct: 263 LNI-YSGTKPEEAAQQWIEENQDVVNKWTEGIE 294
>gi|116252584|ref|YP_768422.1| component of ABC transporter [Rhizobium leguminosarum bv. viciae
3841]
gi|115257232|emb|CAK08327.1| putative component of ABC transporter [Rhizobium leguminosarum bv.
viciae 3841]
Length = 333
Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats.
Identities = 56/338 (16%), Positives = 102/338 (30%), Gaps = 38/338 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M L +F S +A C V A+ W + +ILE+ G I
Sbjct: 3 MKTFLVPAVFAAALSTVAPAEAAECGSVSIAEMKWASAGIAASFDKIILEKGYGCSVTIV 62
Query: 61 LLAVPVTF-RSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVND 118
TF + DI YW S+ + + G + AE L GA +
Sbjct: 63 DGDTLPTFASMNEKGLPDIASEYWINSVRSLLDQAVNTGRLVQGAEILADGAVEGWWIPK 122
Query: 119 VGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
+K + +Y ++ KGF
Sbjct: 123 FIADAHPDIRSVEDALKHPELFPAEDDPSKGAVYNCPADWSCQISTTNLFKALAADKKGF 182
Query: 170 RLIE-ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISG-------- 220
L+E S + I R N I + W P I ++ L G +
Sbjct: 183 ELVETGSPERLDASIARAFDNKIGWLGYYWAPTAILGKYDMTRLSFGVGHNKNEWDRCTA 242
Query: 221 -----------FGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDR 269
+ + +T++ + + ++ LK K+ A N+++ N++
Sbjct: 243 VAGCVRPELNSYPVSRAFTLITRSFASRAGPVTAYLKTRKWDNATINQVLAWQDENRESN 302
Query: 270 QFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ LR + L W+ D + +++ +
Sbjct: 303 EDAAIYFLRNYESLWTKWVP-------VDVAEKVKASL 333
>gi|225552084|ref|ZP_03773024.1| glycine betaine, L-proline ABC transporter,
glycine/betaine/L-proline-binding protein [Borrelia sp.
SV1]
gi|225371082|gb|EEH00512.1| glycine betaine, L-proline ABC transporter,
glycine/betaine/L-proline-binding protein [Borrelia sp.
SV1]
Length = 290
Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats.
Identities = 53/288 (18%), Positives = 105/288 (36%), Gaps = 7/288 (2%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
MYK+ + L S + + + V+ W A T + V+ E +GY I
Sbjct: 1 MYKLFLFFIILMFLSCDEKKISKNLKSVKIGYVNWGGETAATNVLKVVFE-KMGYNAEIF 59
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ + ++ L + ID + W P+ +KF L + + N +G V
Sbjct: 60 SVTTSIMYQYLASGKIDGTVSSWVPTADKFYYEKL-KTKFVDLGANYEGTIQGFVVPSYV 118
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
I S ++ + K+ GI+ G +N S + L+ +SE
Sbjct: 119 P---ISSISELRGKGDKFKNKMIGIDAGAGTQIVTEQALNYYGLSK-EYELVPSSESVML 174
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ + + N + W+PH S +I +L ++ G SV+T+VR + +
Sbjct: 175 ASLDSSIKRNEWILVPLWKPHWAFSRYDIKFLDDP-DLIMGGIESVHTLVRLGLENDDFD 233
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+ + + L +M + + +++K W+
Sbjct: 234 AYYVFDHFYWGDDLILPLMDRNDKESGKEYRNAIEFVEKNKEVVKMWV 281
>gi|213971439|ref|ZP_03399552.1| histidine transporter, periplasmic histidine-binding protein
[Pseudomonas syringae pv. tomato T1]
gi|301382156|ref|ZP_07230574.1| histidine transporter, periplasmic histidine-binding protein
[Pseudomonas syringae pv. tomato Max13]
gi|302060093|ref|ZP_07251634.1| histidine transporter, periplasmic histidine-binding protein
[Pseudomonas syringae pv. tomato K40]
gi|213923800|gb|EEB57382.1| histidine transporter, periplasmic histidine-binding protein
[Pseudomonas syringae pv. tomato T1]
gi|331017886|gb|EGH97942.1| histidine transporter, periplasmic histidine-binding protein
[Pseudomonas syringae pv. lachrymans str. M302278PT]
Length = 320
Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats.
Identities = 53/330 (16%), Positives = 106/330 (32%), Gaps = 33/330 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDA-----DSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M K L L S +S PV+FA W T + VIL++ G
Sbjct: 1 MKKALLTTLVSAGLLASAGASQAAGWCESGKPVKFAGLNWESAMLLTDVLQVILDKGYGC 60
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
+ +L I IF W + G + V + GA
Sbjct: 61 AVDALPGNSIAMENALSTNDIQIFAEEWV-GRSEVWNKAAAAGKVVGVGAPIVGAVEGWY 119
Query: 116 VNDV-----------GFALGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILD 157
V A +KS D+A+Y + Y G +
Sbjct: 120 VPRYVIEGDAKRKLEAKAPNLKSISDLAQYSAVFKDQEEPGKGRFYNCPAGWTCELENSE 179
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
M+ + K + A + I + P + W P P+ +++ L +
Sbjct: 180 MLKSYGLENKYTNFRPGTGPALDAAILSSYKRGEPILTYYWSPTPLMGQVDLVRLEE--K 237
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTML 277
+ V + ++ P + +L+ + + L N+ + + + + + + L
Sbjct: 238 AGVNKTIDIKVGVSKVFHEQAPELIAILEKVNLPIDLLNQNLGRMAKERIESPKLAKIFL 297
Query: 278 RTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ HP++ W+ +D +++++ +
Sbjct: 298 KEHPEVWHKWVS-------EDAAKKVDASL 320
>gi|77456590|ref|YP_346095.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas fluorescens Pf0-1]
gi|77380593|gb|ABA72106.1| putative histidine transport system, substrate-binding protein
[Pseudomonas fluorescens Pf0-1]
Length = 322
Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats.
Identities = 50/328 (15%), Positives = 110/328 (33%), Gaps = 32/328 (9%)
Query: 2 YKILAVCLFLTTFSISYARDAD----SCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
+L L + + + A A S PV+FA W T + V+LE+ KT
Sbjct: 5 KTLLTTLLSMGLLASAGATQAAGWCESGKPVKFAGLNWESGMLLTDVLQVVLEKGYDCKT 64
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+ +L + I IF W + + G + V + GA V
Sbjct: 65 DSLPGNSITMENALSSNDIQIFAEEWV-GRSEVWNKAEKAGKVVGVGAPVVGAIEGWYVP 123
Query: 118 DV-----------GFALGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMI 159
A +K+ D+ KY + Y G +M+
Sbjct: 124 RYVIEGDAKRKLEAKAPDLKNIADLGKYSAIFKDAEEPSKGRFYNCPAGWTCELDNSEML 183
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
+ + A + + + P +F W P P+ ++ L +
Sbjct: 184 KSYGLENSYTNFRPGTGPALDAAVLSSYKRGEPILFYYWSPTPLMGQIDAVKLEEKPGVD 243
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++ + + ++ P + +L+ + + L N+ + + + + + + L+
Sbjct: 244 KTV--TIKVGLSKTFHEQAPELVAVLEKVNLPIDLLNQNLGRMAKERIESPKLAKIFLKE 301
Query: 280 HPDLLKNWLIGVTTFDGQDPSRQLERFM 307
HP++ W+ +D +++++ +
Sbjct: 302 HPEVWHAWVS-------EDAAKKIDAAL 322
>gi|149909859|ref|ZP_01898509.1| hypothetical ABC transporter, substrate binding protein [Moritella
sp. PE36]
gi|149807024|gb|EDM66982.1| hypothetical ABC transporter, substrate binding protein [Moritella
sp. PE36]
Length = 338
Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats.
Identities = 52/344 (15%), Positives = 103/344 (29%), Gaps = 42/344 (12%)
Query: 1 MYKILAVCLFLTTFSISYARD----ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
M+K + + LT S S A C V AD + + ILE
Sbjct: 1 MFKKAPLAMLLTMASFSSFAAENTFAAECGSVTIADMNLGSATLVANIDAFILEHGYDCD 60
Query: 57 TNIKLLAVPVTFRSL-KNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYML 114
I +T S+ + DI +W + +A EEG I + + L GA
Sbjct: 61 VEIVPGNSTITATSMIEKNTPDIAPEFWTNQIRATLAKGGEEGRIVVAGDLLSDGAVSGF 120
Query: 115 AVNDVGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFS 165
V + + + + G ++ N +
Sbjct: 121 WVPAYMVEKDPSLATLAGIKANAKLFKHPEDPSRSAFMACPAGWTCQISTTNLFNAMDLA 180
Query: 166 LKGFRLI-EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIH-------------- 210
GF L+ S + + N W P I ++
Sbjct: 181 DYGFDLVDPGSGAGLAGSMVKAYENKEAWFGYYWSPTAIMDKYDMVRVDFGTGFNREEFE 240
Query: 211 -----YLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNN 265
+++ + A V T+V + + + P + + L F+ N+ + I
Sbjct: 241 NCTIIEDCENPKVTDYPAAPVQTIVTTSFSKREPGVMQYLSKRSFTNMQMNQQLAWIQEE 300
Query: 266 KQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMNN 309
+ D + L + + W+ ++ ++++E + +
Sbjct: 301 QADGDYAAEHFLLNNKVMWSQWVP-------KNVAKKVETALAD 337
>gi|330807063|ref|YP_004351525.1| ABC transporter periplasmic protein [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|327375171|gb|AEA66521.1| Putative ABC transporter, periplasmic component [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 322
Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats.
Identities = 46/328 (14%), Positives = 107/328 (32%), Gaps = 32/328 (9%)
Query: 2 YKILAVCLFLTTFSISYARDAD----SCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
+L L + + + A A S PV+FA W T + V+LE+ KT
Sbjct: 5 KTLLTTLLSMGLLASAGATQAAGWCESGKPVKFAGLNWESAMLLTDVLQVVLEKGYDCKT 64
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+ +L + I +F W + + G + V + GA V
Sbjct: 65 DSLPGNSITMENALSSNDIQVFAEEWV-GRSEVWNKAEKAGKVVGVGAPVVGAIEGWYVP 123
Query: 118 DVGFALGIKSYQD------------------IAKYKKELGAKIYGIEPGNEGNQRILDMI 159
K + ++ + Y G +M+
Sbjct: 124 RYVVEGDAKRKLEAKAPGLKNIADLGQYAAVFKDPEEPSKGRFYNCPAGWTCELDNSEML 183
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
+ + A + + + P +F W P P+ +++ L +
Sbjct: 184 KSYGLEKTYTNFRPGTGPALDAAVLSSYKRGEPILFYYWSPTPLMGQVDLVKLEEKPGVD 243
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
S+ + + D+ P + +L+ + + + N+ + + + + + + L+
Sbjct: 244 KSV--SIKVGLSKTFHDEAPELVTVLEKVNLPIDILNQNLGRMAKERIESPKLAKIFLKE 301
Query: 280 HPDLLKNWLIGVTTFDGQDPSRQLERFM 307
HP++ W+ +D +++++ +
Sbjct: 302 HPEVWHAWVS-------EDAAKKIDAAL 322
>gi|227824438|ref|ZP_03989270.1| conserved hypothetical protein [Acidaminococcus sp. D21]
gi|226904937|gb|EEH90855.1| conserved hypothetical protein [Acidaminococcus sp. D21]
Length = 327
Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats.
Identities = 62/332 (18%), Positives = 108/332 (32%), Gaps = 34/332 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+K++ + FL I D PV FAD GW + A+ ++ E++ G KT I
Sbjct: 4 FKLMILTAFLVLLGILSGCSPDEKRPVVFADPGWDSVRFHNAVAQLVAEKVYGLKTEILY 63
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ P+T +L D+ M W + G I + N + V
Sbjct: 64 GSTPITQAALVRGDADVNMELWTDN-VPTYEADKAAGGIVDLGVNYDDNRQGFYVPRYVI 122
Query: 122 A-----------LGIKSYQD-------IAKYKKELGAKIYGIEPGNEGNQRILDMINNNK 163
+KS +D + ++YG PG + +
Sbjct: 123 EGDAERGIAPMAPDLKSVKDLSRYAALFKDEEDLAKGRLYGAIPGWNIDAILYKKYEVYG 182
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE------- 216
+ SE + +P V WEP ++ L++ L
Sbjct: 183 LNQNYIYFRPGSEATLSTAFLTAYEKGLPVVGYQWEPTWLSGKLDLVLLEDAPYEKAAFE 242
Query: 217 -EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRT 275
++ V S + + P S+ L S L E + + + K + R
Sbjct: 243 EGLTEAPAVKVVIAANSRFPKREPEFSKFLSRYHTSSTLTAEALAHMADTKASYEETARW 302
Query: 276 MLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
L+ H +L+ WL T D + +L +
Sbjct: 303 FLKKHGELVDAWL---TPED----AAKLREAL 327
>gi|163747110|ref|ZP_02154466.1| glycine betaine/proline ABC transporter, periplasmic glycine
betaine/proline-binding protein [Oceanibulbus indolifex
HEL-45]
gi|161379671|gb|EDQ04084.1| glycine betaine/proline ABC transporter, periplasmic glycine
betaine/proline-binding protein [Oceanibulbus indolifex
HEL-45]
Length = 322
Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats.
Identities = 50/311 (16%), Positives = 89/311 (28%), Gaps = 24/311 (7%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M + L +F + A A C V A+ W TA+T +L + G
Sbjct: 1 MKRYLLGTVF--AVATPMAAAAQDCGEVSIAEMNWASAQIVTAVTEFLLVQGYGCDVTTV 58
Query: 61 LLAVPVTFRS-LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQ-GAKYMLAVND 118
S +N DI W S E G I + L G +
Sbjct: 59 PSDTTPAVTSLSENNEPDIVPEMWTNSAGDAYKKLKENGKIVELTSVLDPGGVEGWWIPT 118
Query: 119 VGFA--LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR-LIEAS 175
+ + I + +G G ++ G S
Sbjct: 119 YLAEAHPELTTLDGILANPELVGGMFNNCPDGWGCRLVNDNLARAFDLEGNGIEVFNHGS 178
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG-----------------EEI 218
+ + + P W P ++ + G +
Sbjct: 179 GETLSTSMASAYESEEPWFGYYWGPTTPLGKFDMTSVDMGAYDEAAHTANQNADNPDPKP 238
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLR 278
S F A V TV+ D+ D P I++ + N+ F ++++ + + L+
Sbjct: 239 SAFPTAPVLTVMTKDFHDNNPEIAKFIGNVTFKTDEMSKLLAWQGESNASNEEAAVYFLQ 298
Query: 279 THPDLLKNWLI 289
+ D+ +WL
Sbjct: 299 NNKDVWADWLS 309
>gi|107104199|ref|ZP_01368117.1| hypothetical protein PaerPA_01005272 [Pseudomonas aeruginosa PACS2]
Length = 350
Score = 166 bits (420), Expect = 4e-39, Method: Composition-based stats.
Identities = 58/344 (16%), Positives = 105/344 (30%), Gaps = 46/344 (13%)
Query: 3 KILAVCLFLTTFSISYARDADSC---TPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+ + L L S A C V FA W TT + +LE+ G +T+
Sbjct: 15 RQILAVLALGASLASQTAVAAECPYPGKVVFAGLNWESGMFTTDLLRYLLEKGYGCETDA 74
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+L+ I + W E + V E ++GA V +
Sbjct: 75 LPGNTVTMENALRQNDIQVTGEQWA-GRSPVWRAAEEASEVFSVGETVKGATEGWWVPEY 133
Query: 120 -----------GFALGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINN 161
A ++S D+ +YK + Y G +
Sbjct: 134 LVKGDPQRGIEAKAPELRSVADLPRYKALFRDPEEPAKGRFYNCPTGWTCEIVNSQKLKA 193
Query: 162 NKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLN------------- 208
+ + A + I R P +F W P P+
Sbjct: 194 YRLQDSYTNFRTGTGPALDAAISAAFRRGEPVLFYYWSPTPLMGRFKLVQLEEPPFSEKA 253
Query: 209 IHYLPGGEEISGFG----EASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILN 264
L + G A + V D+ DK P + L + ++ + L NE++ +
Sbjct: 254 WATLSDPKNPDPIGSRSLPAKITIGVSRDFHDKAPALVELFRKVEIPLPLFNELLADMAQ 313
Query: 265 NKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
N ++ V LR H ++ +W+ + + +L+ +
Sbjct: 314 NHREVGEVRAQFLRQHREIWSHWVP-------AEVAARLDTSLK 350
>gi|107104192|ref|ZP_01368110.1| hypothetical protein PaerPA_01005265 [Pseudomonas aeruginosa PACS2]
Length = 316
Score = 166 bits (420), Expect = 4e-39, Method: Composition-based stats.
Identities = 48/303 (15%), Positives = 99/303 (32%), Gaps = 28/303 (9%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGY 82
+S V+FA W T + +L + G T+ ++L I +F
Sbjct: 24 ESGKAVKFAGLNWESGTLLTELMQFVLAKGYGCTTDSLPGNSITMEQALSTNDIQVFAEE 83
Query: 83 WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV-----------GFALGIKSYQDI 131
W G + V E + GA V A ++S D+
Sbjct: 84 WI-GRSDAWNKAAAAGKVVGVGEPIVGAVEGWYVPRYVIEGDPQRKLEAKAPKLRSIADL 142
Query: 132 AKYKKELGA-------KIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
A+Y + + Y G +M+ + + A + +
Sbjct: 143 AQYAEVFRDPEEPGKGRFYNCPAGWTCELENSEMLKSYGLEETFTNFRPGTGPALDAAVL 202
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
R P +F W P P+ ++ L + + + + D+ P + +
Sbjct: 203 SSYRRGEPILFYYWSPTPLMGRADLVRLEERPGVDK--RIRIQVGLSRTFHDQAPELVAV 260
Query: 245 LKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLE 304
L+ + L N + + ++ D + R L+ HP++ W+ +D ++++E
Sbjct: 261 LEKVNLPAELLNSDLARMAKDRIDAARLAREFLKEHPEVWHAWVD-------EDAAKKIE 313
Query: 305 RFM 307
+
Sbjct: 314 AAL 316
>gi|317127057|ref|YP_004093339.1| substrate-binding region of ABC-type glycine betaine transporter
[Bacillus cellulosilyticus DSM 2522]
gi|315472005|gb|ADU28608.1| Substrate-binding region of ABC-type glycine betaine transport
system [Bacillus cellulosilyticus DSM 2522]
Length = 316
Score = 166 bits (420), Expect = 4e-39, Method: Composition-based stats.
Identities = 59/274 (21%), Positives = 109/274 (39%), Gaps = 7/274 (2%)
Query: 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDI 78
A + + W A+T + +L + GY + + + ++S+ N D
Sbjct: 50 ATTNEEGGEIELVYVEWDSEVASTHVIGQVLADQ-GYDVTLTPIDNAIMWQSVANGEADG 108
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL 138
+ W P+ + + + + NL+GAK L V + I S +D+ +Y EL
Sbjct: 109 MVAAWLPATHGDLYEEYSDS-LVDLGTNLEGAKIGLVVPSY---MTIDSIEDLDQYADEL 164
Query: 139 GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
G+ I GIEPG Q ++ + +L G+ + +S A + N P V W
Sbjct: 165 GSTITGIEPGAGVVQAAETAVDEDYANLDGWDVQTSSSGAMAQALGEAVNNEEPIVVTGW 224
Query: 199 EPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEM 258
PH + ++ YL + G E + T+VR + P ++L ++ A E+
Sbjct: 225 TPHWKFASYDLKYLDDPQGSFGEAEY-IATMVREGLQEDLPGAYQILDQFNWTAADMEEV 283
Query: 259 MKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVT 292
M I + + + + + W+ GV
Sbjct: 284 MLDI-QEGASAEDAAAAWIEANEEKVAEWVAGVE 316
>gi|218894195|ref|YP_002443064.1| putative binding protein component of ABC transporter [Pseudomonas
aeruginosa LESB58]
gi|254238197|ref|ZP_04931520.1| hypothetical protein PACG_04323 [Pseudomonas aeruginosa C3719]
gi|296391944|ref|ZP_06881419.1| putative binding protein component of ABC transporter [Pseudomonas
aeruginosa PAb1]
gi|313110134|ref|ZP_07796036.1| putative binding protein component of ABC transporter [Pseudomonas
aeruginosa 39016]
gi|126170128|gb|EAZ55639.1| hypothetical protein PACG_04323 [Pseudomonas aeruginosa C3719]
gi|218774423|emb|CAW30240.1| probable binding protein component of ABC transporter [Pseudomonas
aeruginosa LESB58]
gi|310882538|gb|EFQ41132.1| putative binding protein component of ABC transporter [Pseudomonas
aeruginosa 39016]
Length = 322
Score = 166 bits (420), Expect = 4e-39, Method: Composition-based stats.
Identities = 48/303 (15%), Positives = 99/303 (32%), Gaps = 28/303 (9%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGY 82
+S V+FA W T + +L + G T+ ++L I +F
Sbjct: 30 ESGKAVKFAGLNWESGTLLTELMQFVLAKGYGCTTDSLPGNSITMEQALSTNDIQVFAEE 89
Query: 83 WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV-----------GFALGIKSYQDI 131
W G + V E + GA V A ++S D+
Sbjct: 90 WI-GRSDAWNKAAAAGKVVGVGEPIVGAVEGWYVPRYVIEGDPQRKLEAKAPKLRSIADL 148
Query: 132 AKYKKELGA-------KIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
A+Y + + Y G +M+ + + A + +
Sbjct: 149 AQYAEVFRDPEEPGKGRFYNCPAGWTCELENSEMLKSYGLEETFTNFRPGTGPALDAAVL 208
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
R P +F W P P+ ++ L + + + + D+ P + +
Sbjct: 209 SSYRRGEPILFYYWSPTPLMGRADLVRLEERPGVDK--RIRIQVGLSRTFHDQAPELVAV 266
Query: 245 LKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLE 304
L+ + L N + + ++ D + R L+ HP++ W+ +D ++++E
Sbjct: 267 LEKVNLPAELLNSDLARMAKDRIDAARLAREFLKEHPEVWHAWVD-------EDAAKKIE 319
Query: 305 RFM 307
+
Sbjct: 320 AAL 322
>gi|28872383|ref|NP_795002.1| histidine transporter, periplasmic histidine-binding protein
[Pseudomonas syringae pv. tomato str. DC3000]
gi|302132377|ref|ZP_07258367.1| histidine transporter, periplasmic histidine-binding protein
[Pseudomonas syringae pv. tomato NCPPB 1108]
gi|28855638|gb|AAO58697.1| histidine transporter, periplasmic histidine-binding protein
[Pseudomonas syringae pv. tomato str. DC3000]
Length = 322
Score = 166 bits (420), Expect = 4e-39, Method: Composition-based stats.
Identities = 53/330 (16%), Positives = 106/330 (32%), Gaps = 33/330 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDA-----DSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M K L L S +S PV+FA W T + VIL++ G
Sbjct: 3 MKKALLTTLVSAGLLASAGASQAAGWCESGKPVKFAGLNWESAMLLTDVLQVILDKGYGC 62
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
+ +L I IF W + G + V + GA
Sbjct: 63 AVDALPGNSIAMENALSTNDIQIFAEEWV-GRSEVWNKAAAAGKVVGVGAPIVGAVEGWY 121
Query: 116 VNDV-----------GFALGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILD 157
V A +KS D+A+Y + Y G +
Sbjct: 122 VPRYVIEGDAKRKLEAKAPNLKSISDLAQYSAVFKDQEEPGKGRFYNCPAGWTCELENSE 181
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
M+ + K + A + I + P + W P P+ +++ L +
Sbjct: 182 MLKSYGLENKYTNFRPGTGPALDAAILSSYKRGEPILTYYWSPTPLMGQVDLVRLEE--K 239
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTML 277
+ V + ++ P + +L+ + + L N+ + + + + + + L
Sbjct: 240 AGVNKTIDIKVGVSKVFHEQAPELIAILEKVNLPIDLLNQNLGRMAKERIESPKLAKIFL 299
Query: 278 RTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ HP++ W+ +D +++++ +
Sbjct: 300 KEHPEVWHKWVS-------EDAAKKVDASL 322
>gi|70733907|ref|YP_257547.1| histidine transporter, periplasmic histidine-binding protein
[Pseudomonas fluorescens Pf-5]
gi|68348206|gb|AAY95812.1| histidine transporter, periplasmic histidine-binding protein
[Pseudomonas fluorescens Pf-5]
Length = 321
Score = 166 bits (420), Expect = 4e-39, Method: Composition-based stats.
Identities = 51/329 (15%), Positives = 109/329 (33%), Gaps = 32/329 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDAD----SCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
M+K L L + A S V+FA W T + ++LE+ G K
Sbjct: 3 MHKTLLTTLLSMGLLAASGAQAAGWCESGKAVKFAGLNWESGMLLTDVLQLVLEKGYGCK 62
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
T+ +L + I IF W + + G + V + GA V
Sbjct: 63 TDSLPGNSITMENALGSNDIQIFAEEWV-GRSEVWNKAEKAGKVVGVGAPVVGAVEGWYV 121
Query: 117 NDV-----------GFALGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDM 158
A +K+ D+ KY + Y G +M
Sbjct: 122 PRYVIEGDAKRKLEAKAPDLKNIADLGKYASVFKDPEEPSKGRFYNCPAGWTCELDNSEM 181
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ + + A + + + P +F W P P+ +++ L +
Sbjct: 182 LKSYGLESSYTNFRPGTGPALDAAVLSSYKRGEPILFYYWSPTPLMGQVDLVKLDEKPGV 241
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLR 278
S+ + + D+ P + +L+ + + L N+ + + + + + + L+
Sbjct: 242 DKSV--SIKVGLSRVFHDEAPELVAVLEKVNLPIDLLNQNLARMSRERIESPKLAKLFLK 299
Query: 279 THPDLLKNWLIGVTTFDGQDPSRQLERFM 307
HP++ W+ ++ + +++ +
Sbjct: 300 EHPEVWHPWVS-------EEAAGKIDAAL 321
>gi|148547437|ref|YP_001267539.1| glycine betaine ABC transporter substrate-binding protein
[Pseudomonas putida F1]
gi|148511495|gb|ABQ78355.1| Substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas putida F1]
Length = 338
Score = 166 bits (420), Expect = 4e-39, Method: Composition-based stats.
Identities = 50/346 (14%), Positives = 104/346 (30%), Gaps = 47/346 (13%)
Query: 1 MYK----ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
M + + + L + S A A+ P+ F GW A TT + +I+E GY
Sbjct: 1 MKRFPALLAGLLLTVGLASTDSAASAEQPAPIHFGAIGWESGALTTEILRLIVERGYGYS 60
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
T+ + +L + + W + G + + + ++ A+ V
Sbjct: 61 TDTLPGSTVSMEVALARNDLQVIAEEWA-GRSPAWVKAEQAGQVFALGDTVKNAEEGWWV 119
Query: 117 NDVGFA-----------LGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDM 158
+ S +D+ +Y + + G
Sbjct: 120 PAYVIEGDAARNLKPVAPELHSVEDLKRYPQVFSDPESPGKGRFLNSPSGWTSETVNSQK 179
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLN---------- 208
+ S A ++I R P +F W P P+
Sbjct: 180 LKAYGLDGLYNNFRSGSGAAMDAEIGSAIRRGKPVLFYYWNPTPLMGRYKLIRLEEPPFD 239
Query: 209 ---IHYLPGGEEISGFG----EASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKL 261
L + G A + V + + P++ + + + + N+ + +
Sbjct: 240 AQAWATLTDPANPNPKGSRSLPAKLSIGVSKAFRENYPDLVSVFEQVNLPIDRLNKALAV 299
Query: 262 ILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ + + T LR H ++ K WL D + ++E +
Sbjct: 300 MSEKRTPPREAALTFLRDHREVWKTWLP-------ADIAAKVEASL 338
>gi|119386563|ref|YP_917618.1| substrate-binding region of ABC-type glycine betaine transport
system [Paracoccus denitrificans PD1222]
gi|119377158|gb|ABL71922.1| Substrate-binding region of ABC-type glycine betaine transport
system [Paracoccus denitrificans PD1222]
Length = 331
Score = 166 bits (419), Expect = 4e-39, Method: Composition-based stats.
Identities = 51/338 (15%), Positives = 105/338 (31%), Gaps = 38/338 (11%)
Query: 1 MYKILAVC-LFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M K LA L ++ + C + A+ W + +ILEE G +
Sbjct: 1 MGKFLASTTLAFMALAVPAFAADEECGSITVAEMNWASAGLAAWVDKIILEEGYGCDVAL 60
Query: 60 KLLAVPVTF-RSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVN 117
TF + D+ W ++++ + + EG I + ++ L G + V
Sbjct: 61 VSGDTMPTFASMNEKAQPDMAPELWVNAVKEPLDQAVAEGRIVIASQILSDGGVEGIWVP 120
Query: 118 DVGFALG--------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
++ + + +G G + + + KGF
Sbjct: 121 TWLAEEHNIHTLKDALEHPELFPGAEDSSKGAWFGCPSGWACQAINRNQFVGSGAADKGF 180
Query: 170 RLIE-ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIH------------------ 210
L++ S A I R + W P I ++
Sbjct: 181 ELVDSGSAAALDGSIARAANRKEGWLGYYWAPTAILGQYDMTRLELEAEFDRERWDNCMV 240
Query: 211 -YLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDR 269
+++ + + VYT V ++ DK +K +S N M+ ++ N+
Sbjct: 241 KPDCVDPQVTEWPVSDVYTAVTKEFADKAGVAMDYVKTRAWSNETVNAMLAWMVKNQASN 300
Query: 270 QFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ L H D+ W+ + + ++ +
Sbjct: 301 EDAAYEFLERHEDIWTEWVP-------AEVADKVRAAL 331
>gi|256788772|ref|ZP_05527203.1| glycine betaine transport system permease protein [Streptomyces
lividans TK24]
gi|289772667|ref|ZP_06532045.1| glycine betaine transport system permease [Streptomyces lividans
TK24]
gi|289702866|gb|EFD70295.1| glycine betaine transport system permease [Streptomyces lividans
TK24]
Length = 872
Score = 166 bits (419), Expect = 4e-39, Method: Composition-based stats.
Identities = 53/289 (18%), Positives = 105/289 (36%), Gaps = 7/289 (2%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNK 74
+ ++ V W + A+T + ILE+ G++ + + +L
Sbjct: 328 TAGGGKNVGDGKKVSIGYIPWDEGVASTFLWKEILEQR-GFEVEAEQFEAGPLYTALAQG 386
Query: 75 GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKY 134
ID W P+ + + ++ + L V I S +D+
Sbjct: 387 NIDFQTDSWLPTTHEQYWKKYGK-QLEDLGSWYDETSLELTVPAY--MKDINSLEDLKGK 443
Query: 135 KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAV 194
G KI GIEP + + K ++++++S A ++++R P V
Sbjct: 444 ADLFGGKITGIEPSAGEMNLLKTKVLKEYGLDKEYKVVDSSTPAMLAELKRAYSKQEPIV 503
Query: 195 FLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVAL 254
W PH +D + L + G G+ V+++ R + P +++ LK+ +
Sbjct: 504 TTLWSPHWAYNDYKLKKLKDPKGAWGKGDG-VHSLSRKGFSGDNPVVAKWLKDFSMTEKQ 562
Query: 255 ENEMMKLILNNKQ-DRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQ 302
+ I + +Q RT L +P ++ L V G P+
Sbjct: 563 LTSLEAEINKAGKGQQQEAVRTWLEANPGVVDK-LAPVEGGSGATPAEA 610
Score = 165 bits (416), Expect = 9e-39, Method: Composition-based stats.
Identities = 59/271 (21%), Positives = 110/271 (40%), Gaps = 6/271 (2%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNK 74
S A A++ P+ A W + A T + +LE GYK N+K + V + L +
Sbjct: 601 GGSGATPAEAKQPLDVAWFPWEEDVAVTYLWKNVLERR-GYKMNLKQMDVGPVYTGLASG 659
Query: 75 GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKY 134
GID+ W P + ++ ++ + + +AV +KS D+
Sbjct: 660 GIDLNFDAWLPYAQSNYWNKHKD-NLVDLGTWYEPTSLEIAVPSYV--KDVKSLADLKGK 716
Query: 135 KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAV 194
KI GIEPG Q + + + + +++ S A ++++R P
Sbjct: 717 SDLFDGKIIGIEPGTGEMQLLKNDVLPGYGLEDEYEVVDGSTPAMLAELKRALAKKEPVA 776
Query: 195 FLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVAL 254
W PH SD + L ++ G G ++ T+ + ++ P +++ +KN K S
Sbjct: 777 VTLWSPHWAYSDYELTKLKDPKKAFGEG-NTIRTISSKKFPEQYPQLTKWIKNFKMSEDE 835
Query: 255 ENEMMKLILNNKQ-DRQFVGRTMLRTHPDLL 284
+ I + Q + L+ HPD++
Sbjct: 836 LGSLEAEIKDRGQGQEEEAVAAWLKEHPDVV 866
>gi|94991666|ref|YP_599765.1| glycine betaine-binding protein / glycine betaine transport system
permease protein [Streptococcus pyogenes MGAS2096]
gi|94545174|gb|ABF35221.1| Glycine betaine-binding protein / Glycine betaine transport system
permease protein [Streptococcus pyogenes MGAS2096]
Length = 247
Score = 166 bits (419), Expect = 5e-39, Method: Composition-based stats.
Identities = 51/257 (19%), Positives = 96/257 (37%), Gaps = 10/257 (3%)
Query: 33 TGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIA 92
W A+T + + +L+ GY + L V ++++ N D W P
Sbjct: 1 MQWDSEVASTHVIAEVLKNE-GYHVTLTPLDNAVMWQTVANGNADFSTSAWLPVTHGQQY 59
Query: 93 PYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGN 152
+ + + NL+G K LAV I K+ KI GIEPG
Sbjct: 60 QKY-KSKLDDLGPNLKGTKLGLAVPKYM-----TDVNSIEDLSKQADQKITGIEPGAGIM 113
Query: 153 QRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYL 212
+ +L + L+ AS A + + + + P V +W PH + + ++ YL
Sbjct: 114 AAAKKTLKEYH-NLSSWELVAASTGAMTTSLDQAIKKKDPIVVTAWSPHWMFAKYDLKYL 172
Query: 213 PGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
+E G E ++ T+ R PN+ +++ ++ +M I N +
Sbjct: 173 KDPKETFGSTE-NINTIARKGLKKDLPNVYKIIDKFHWTQKDMEAVMLDI-NKGMSPEAA 230
Query: 273 GRTMLRTHPDLLKNWLI 289
+ + + + +W
Sbjct: 231 AKKWVEANKSKVSSWTK 247
>gi|328766019|gb|EGF76094.1| hypothetical protein BATDEDRAFT_28823 [Batrachochytrium
dendrobatidis JAM81]
Length = 339
Score = 166 bits (419), Expect = 5e-39, Method: Composition-based stats.
Identities = 60/334 (17%), Positives = 112/334 (33%), Gaps = 37/334 (11%)
Query: 4 ILAVCLFLTTFSISYARD---ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
I+ + L +++ D A + AD GW + + + I+E Y
Sbjct: 11 IMLILLIGLGIYSNFSEDGTKAAEKQAITIADGGWDSMQVHNFIAAFIIENGYDYPVTFI 70
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ TF L ID++M WY ++E+ LE G I ++ NL V
Sbjct: 71 NGSSIATFAGLTTGEIDVYMELWYNNMEEPYLEGLEAGEIMELSTNLVTDDQGFYVPTFV 130
Query: 121 FA-----------LGIKSYQDIAKYKKELGAK-------IYGIEPGNEGNQRILDMINNN 162
+++ +D+ KY + I G G + + + +N
Sbjct: 131 IEGDLENGIEPMAPDLETVEDLKKYPELFQDPEDPSKGVIIGAPSGTVIHDVLEEKVNTY 190
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI---- 218
+ S A + I R N+ V W P + ++ L
Sbjct: 191 GLNESYNYFTPGSAGAVTASIARAFTNHEAWVGYQWSPTWTMAKYDMTLLKEPAYDEEIF 250
Query: 219 -----SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVG 273
+ F E Y V + ++ P+I+ L N + S L E + + N +
Sbjct: 251 NKNFGTAFPENPAYIVANAGLEERAPDITEFLSNYETSNVLTGEALLYMEENNASPEEAA 310
Query: 274 RTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
L + D+ WL +D + +++ +
Sbjct: 311 LWFLENYEDVWTKWLP-------EDVAEKVKAAL 337
>gi|330874122|gb|EGH08271.1| histidine transporter, periplasmic histidine-binding protein
[Pseudomonas syringae pv. morsprunorum str. M302280PT]
Length = 320
Score = 166 bits (419), Expect = 5e-39, Method: Composition-based stats.
Identities = 51/330 (15%), Positives = 106/330 (32%), Gaps = 33/330 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDA-----DSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M K L L S +S PV+FA W T + VIL++ G
Sbjct: 1 MKKALLTTLVSAGLLASAGASQAAGWCESGKPVKFAGLNWESAMLLTDVLQVILDKGYGC 60
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
+ +L I +F W + G + + + GA
Sbjct: 61 AVDALPGNSIAMENALSTNDIQVFAEEWV-GRSEVWNKAAAAGKVVGIGAPIVGAVEGWY 119
Query: 116 VNDV-----------GFALGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILD 157
V A +KS D+A+Y + Y G +
Sbjct: 120 VPRYVIEGDAKRKLEAKAPNLKSISDLAQYSAVFKDQEEPGKGRFYNCPAGWTCELENSE 179
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
M+ + K + A + I + P + W P P+ +++ L +
Sbjct: 180 MLKSYGLENKYTNFRPGTGPALDAAILSSYKRGEPILTYYWSPTPLMGQVDLVRLEE--K 237
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTML 277
+ V + ++ P + +L+ + + L N+ + + + + + + L
Sbjct: 238 AGVNKTIDIKVGVSKVFHEQAPELIAVLEKVNLPIDLLNQNLGRMAKERIESPKLAKIFL 297
Query: 278 RTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ HP++ W+ +D +++++ +
Sbjct: 298 KEHPEVWHKWVS-------EDAAKKVDASL 320
>gi|221200704|ref|ZP_03573745.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia multivorans CGD2M]
gi|221206900|ref|ZP_03579911.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia multivorans CGD2]
gi|221172974|gb|EEE05410.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia multivorans CGD2]
gi|221179276|gb|EEE11682.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia multivorans CGD2M]
Length = 293
Score = 166 bits (419), Expect = 5e-39, Method: Composition-based stats.
Identities = 66/291 (22%), Positives = 107/291 (36%), Gaps = 9/291 (3%)
Query: 2 YKILAVCLFLTTFSISYARDADSC--TPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
++ L L ++T A + PVR A T W D+ A + +LE L
Sbjct: 6 FRSLLANLAVSTVVACSAAAGTASAAEPVRIAVTNWADVLAVANVAKYVLETQLKQPVQF 65
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ + ++ + +DI +G W P + + V G K AV
Sbjct: 66 VQADIGIQYQGIARGDLDIMVGGWLPVTHGAYYAKY-KNDLDDVGVVYSGGKNGWAVPAY 124
Query: 120 GFALGIKSYQDIAKY--KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
+ S D+ K K +L I GIEPG Q I G+ L +SE
Sbjct: 125 VPESELSSIADLNKPEVKSKLNGTIQGIEPGGGLMQASEKTIKAYNLD--GYNLQASSEA 182
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDK 237
+ + R ++ V W PH + + YL + G GE ++ + K
Sbjct: 183 GMLASVSRAYQSKQWIVATVWSPHWLFQKWPMRYLKDPKGTLG-GEEQIHAFASKKFAGK 241
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
P + K++K ++A + N+ D + + HPD LK WL
Sbjct: 242 FPRAAVFFKHLKLTLADVEAIEFE-GNSTNDYASAAKKFVDAHPDKLKAWL 291
>gi|254250005|ref|ZP_04943325.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia cenocepacia PC184]
gi|124876506|gb|EAY66496.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia cenocepacia PC184]
Length = 346
Score = 166 bits (419), Expect = 5e-39, Method: Composition-based stats.
Identities = 61/296 (20%), Positives = 117/296 (39%), Gaps = 13/296 (4%)
Query: 1 MY---KILAVCLFLTTFSISYARDADSCTPVRFADT-GWTDIAATTAMTSVILEEILGYK 56
M K+L ++S + AD+ ++ GW D AT+ + + ++E+ LGY+
Sbjct: 60 MKLFGKLLWTGALSAMVALSASALADTKPTLKIGYVEGWDDSVATSNVAARVIEKKLGYE 119
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ +A + ++ + +D + W P + + + N AK L V
Sbjct: 120 VKLVPVAAGIMWQGVARGDLDATLSAWLPVTHGSYWDEY-KAKVVDLGANFPDAKIGLIV 178
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
A KS D+ K G +I GI+ G ++ D I + + + L+ +S
Sbjct: 179 PAYVKA---KSIDDLNAEKGSFGGRIVGIDAGAGVMRKTDDAIKSYGLN---YTLMPSSG 232
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
A +++ R N P + W PH + + + +L +++ G G V +VV
Sbjct: 233 SAMTAELSRSVGANKPVIVTGWAPHWMFAKWKLRFLEDPKKVFG-GAEHVDSVVNPGLET 291
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVT 292
K + LK ++ + +M I N + + H D + +W G
Sbjct: 292 KAKPVVAFLKKFQWKPGEIDSVMLAI-QNGSKPEAAADAWIAAHADRVNSWTEGAQ 346
>gi|218894202|ref|YP_002443071.1| putative ABC transporter, periplasmic substrate-binding protein
[Pseudomonas aeruginosa LESB58]
gi|218774430|emb|CAW30247.1| putative ABC transporter, periplasmic substrate-binding protein
[Pseudomonas aeruginosa LESB58]
Length = 340
Score = 165 bits (418), Expect = 6e-39, Method: Composition-based stats.
Identities = 59/344 (17%), Positives = 106/344 (30%), Gaps = 46/344 (13%)
Query: 3 KILAVCLFLTTFSISYARDADSC---TPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+ + L L S A C V FA W TT + +LE+ G +T+
Sbjct: 5 RQILAVLALGASLASQTAVAAECPYPGKVVFAGLNWESGMFTTDLLRYVLEKGYGCETDA 64
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+L+ I + W E G + V E ++GA V +
Sbjct: 65 LPGNTVTMENALRQNDIQVTGEQWA-GRSPVWRAAEEAGEVFSVGETVKGATEGWWVPEY 123
Query: 120 -----------GFALGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINN 161
A ++S D+ +YK + Y G +
Sbjct: 124 LVKGDPQRGIEAKAPELRSIADLPRYKALFRDPEEPAKGRFYNCPTGWTCEIVNSQKLKA 183
Query: 162 NKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLN------------- 208
+ + A + I R P +F W P P+
Sbjct: 184 YRLQDSYTNFRTGTGPALDAAISAAFRRGEPVLFYYWSPTPLMGRFKLVQLEEPPFSEKA 243
Query: 209 IHYLPGGEEISGFG----EASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILN 264
L + G A + V D+ DK P + L + ++ + L NE++ +
Sbjct: 244 WATLSDPKNPDPIGSRSLPAKITIGVSRDFHDKAPALVELFRKVEIPLPLFNELLADMAQ 303
Query: 265 NKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
N ++ V LR H ++ +W+ + + +L+ +
Sbjct: 304 NHREVGEVRAQFLRQHREIWSHWVP-------AEVAARLDTSLK 340
>gi|327187948|gb|EGE55180.1| putative amino acid ABC transporter, substrate-binding protein
[Rhizobium etli CNPAF512]
Length = 332
Score = 165 bits (418), Expect = 6e-39, Method: Composition-based stats.
Identities = 54/339 (15%), Positives = 102/339 (30%), Gaps = 39/339 (11%)
Query: 1 MYKILA-VCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M ++L F+ A +A C V A+ W +ILE+ G I
Sbjct: 1 MKRLLVPAVFAAALFTTVVAVEAAECGRVSIAEMKWASAGIAANFDKIILEKGYGCSVTI 60
Query: 60 KLLAVPVTF-RSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVN 117
TF + DI YW S+ + + G + AE L GA +
Sbjct: 61 VDGDTLPTFASMNEKGTPDIASEYWINSVRALLDQAVNSGRLVQGAEILADGAVEGWWIP 120
Query: 118 DVGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
++ +Y ++ KG
Sbjct: 121 KFIADANPDIRSVEDALRRPDLFPAEDDASKGAVYNCPADWSCQISTTNLFKALAADKKG 180
Query: 169 FRLIE-ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISG------- 220
F L+E S + I R N I + W P I ++ L G S
Sbjct: 181 FELVETGSPERLDASIARAFDNKIGWLGYYWAPTAILGKYDMTRLSFGVGHSKSEWDRCT 240
Query: 221 ------------FGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQD 268
+ + +T++ + + ++ LK+ K+ N+++ +++
Sbjct: 241 AVAGCARPQLNSYPVSRAFTLMTRSFASRAEPVTAYLKSRKWDNETINQVLAWQDEHRES 300
Query: 269 RQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ LR + L W+ D + +++ +
Sbjct: 301 NEDAAIYFLRNYESLWMKWVPL-------DVAEKVKASL 332
>gi|297563457|ref|YP_003682431.1| substrate-binding region of ABC-type glycine betaine transporter
[Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
gi|296847905|gb|ADH69925.1| Substrate-binding region of ABC-type glycine betaine transport
system [Nocardiopsis dassonvillei subsp. dassonvillei
DSM 43111]
Length = 310
Score = 165 bits (418), Expect = 6e-39, Method: Composition-based stats.
Identities = 61/302 (20%), Positives = 110/302 (36%), Gaps = 17/302 (5%)
Query: 1 MYKILAVCLFLTTFSISYARD-----------ADSCTPVRFADTGWTDIAATTAMTSVIL 49
M + A + + + + A W + A T M IL
Sbjct: 7 MTALSAAGMSAALLLTACGGGGGESLTGPEEGGEDAKEINIALIAWEEGIAVTHMWQAIL 66
Query: 50 EEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQG 109
EE GY I + V ++ N +D+F+ W P + ++ +
Sbjct: 67 EEK-GYDVTITDVDVAPMYQGAANGDVDLFLDTWLPVTHADYWEDYGD-QLEDLGAWYDN 124
Query: 110 AKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
AK + V + S D+ + ELG +I GI+PG + + F
Sbjct: 125 AKLTITVPSYMED--VNSISDLTDHADELGGRIVGIDPGAGLTRVTQEEAMPGYGLDGDF 182
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV 229
L+ +S A +++ P V W PHP + ++ L E + G E +++ V
Sbjct: 183 ELVTSSTAAMLAELDSAITEEEPIVVTLWRPHPAYAQYDLKDLEDPEGLMGDAE-TIHAV 241
Query: 230 VRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQ-DRQFVGRTMLRTHPDLLKNWL 288
R + ++ P ++ L++ + S + L Q D + R L +P+ L+ L
Sbjct: 242 GRDGFGEEYPELTGWLESFQLSDDELATLEVQTLQEHQDDPEAGARAWLAENPEFLERTL 301
Query: 289 IG 290
G
Sbjct: 302 GG 303
>gi|302561573|ref|ZP_07313915.1| glycine betaine/proline ABC transporter, permease/substrate-binding
protein [Streptomyces griseoflavus Tu4000]
gi|302479191|gb|EFL42284.1| glycine betaine/proline ABC transporter, permease/substrate-binding
protein [Streptomyces griseoflavus Tu4000]
Length = 872
Score = 165 bits (418), Expect = 6e-39, Method: Composition-based stats.
Identities = 50/292 (17%), Positives = 105/292 (35%), Gaps = 7/292 (2%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNK 74
+ + + + + W + A+T + ILE+ G++ K + +L
Sbjct: 328 ATADGENVGNGKKITIGYIPWDEGVASTFLWKEILEQR-GFEVEAKQFEAGPLYTALAQG 386
Query: 75 GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKY 134
ID W P+ + + ++ + L V + S +D+
Sbjct: 387 NIDFQTDSWLPTTHEAYWKKYGK-QLEDLGSWYGETSLELTVPSY--MKDVNSLEDLKGK 443
Query: 135 KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAV 194
KI GIE + + K ++++++S A ++++R P V
Sbjct: 444 ASTFDGKITGIESSAGMMGLLKSKVLKEYGLDKEYKVVDSSTPAMLAELKRAYSKKEPVV 503
Query: 195 FLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVAL 254
W PH SD ++ L + G G+ V+T+ R + P +++ LK+ +
Sbjct: 504 VTLWSPHWAYSDYDLKKLKDPKGTWGKGDG-VHTLSRKGFTGDNPTVAKWLKDFSMTEKQ 562
Query: 255 ENEMMKLILNNKQD-RQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLER 305
+ I + +Q R ++ +P + L V + G P+
Sbjct: 563 LTSLEAEINKAGKGRQQDAVRAWMKDNPGVADK-LAPVGSGSGDTPAEAERA 613
Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats.
Identities = 54/277 (19%), Positives = 108/277 (38%), Gaps = 6/277 (2%)
Query: 10 FLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFR 69
S S A++ + A W + A T + +LE GYK N+K + V +
Sbjct: 596 LAPVGSGSGDTPAEAERALDVAWFPWEEDVAVTYLWKNVLERR-GYKMNLKQMDVGPVYT 654
Query: 70 SLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQ 129
L + +D+ W P +K + + + + +AV +KS
Sbjct: 655 GLASGDLDLNFDAWLPYAQKNYWDK-SKDKLTDLGTWYEPTSLEIAVPSYV--KDVKSLA 711
Query: 130 DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRN 189
D+ +I GIEPG Q + + + +++++ S A ++++R
Sbjct: 712 DLKGKADLFKGRIIGIEPGTGEMQLLKNEVLPGYGLEDEYKVVDGSTPAMLAELKRAYAK 771
Query: 190 NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
P W PH SD + L ++ G G ++ T+ + ++ P ++ +K+ +
Sbjct: 772 KEPIAVTLWSPHWAYSDYELTKLKDPKKAFGEG-NTIRTIASKKFPEQYPQLTEWIKDFR 830
Query: 250 FSVALENEMMKLILNNKQD-RQFVGRTMLRTHPDLLK 285
S + I + Q + L+ HPD+++
Sbjct: 831 MSEDELGTLEAEIKDRGQGHEEEAVAAWLKEHPDMVE 867
>gi|254254491|ref|ZP_04947808.1| hypothetical protein BDAG_03791 [Burkholderia dolosa AUO158]
gi|124899136|gb|EAY70979.1| hypothetical protein BDAG_03791 [Burkholderia dolosa AUO158]
Length = 326
Score = 165 bits (418), Expect = 6e-39, Method: Composition-based stats.
Identities = 63/296 (21%), Positives = 118/296 (39%), Gaps = 13/296 (4%)
Query: 1 MY---KILAVCLFLTTFSISYARDADSCTPVRFADT-GWTDIAATTAMTSVILEEILGYK 56
M K+L + T ++S + AD+ ++ GW D AT+ + + I+E+ LGY+
Sbjct: 40 MKLLGKLLWTGVLSATMALSASAFADTKPTLKIGYVEGWDDSVATSNVAARIIEKKLGYQ 99
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ +A + ++ + +D + W P + + + N AK L V
Sbjct: 100 VQLVPVAAGIMWQGVARGDLDATLSAWLPVTHGSYWDEY-KSKVVDLGANFPDAKIGLIV 158
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
A KS +D+ K G +I GI+ G ++ D I + + L+ +S
Sbjct: 159 PAYVKA---KSIEDLNAEKSSFGGRIVGIDAGAGVMRKTDDAIKSYGL---SYTLMPSSG 212
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
A +++ R N P + W PH + + + +L +++ G G V +VV
Sbjct: 213 SAMTAELSRSVNANKPVIVTGWAPHWMFAKWKLRFLDDPKKVFG-GAEHVDSVVNPSLET 271
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVT 292
K + LK ++ + +M I N + + H D + W G
Sbjct: 272 KAKPVVAFLKKFQWKPGEIDSVMLAI-QNGSKPEAAADAWIAAHADRVNAWTEGAQ 326
>gi|254392834|ref|ZP_05008004.1| glycine betaine ABC transport system permease protein [Streptomyces
clavuligerus ATCC 27064]
gi|294811675|ref|ZP_06770318.1| Glycine betaine ABC transport system permease protein [Streptomyces
clavuligerus ATCC 27064]
gi|326440141|ref|ZP_08214875.1| putative glycine betaine ABC transporter substrate-binding and
permease component [Streptomyces clavuligerus ATCC
27064]
gi|197706491|gb|EDY52303.1| glycine betaine ABC transport system permease protein [Streptomyces
clavuligerus ATCC 27064]
gi|294324274|gb|EFG05917.1| Glycine betaine ABC transport system permease protein [Streptomyces
clavuligerus ATCC 27064]
Length = 598
Score = 165 bits (418), Expect = 7e-39, Method: Composition-based stats.
Identities = 48/259 (18%), Positives = 90/259 (34%), Gaps = 6/259 (2%)
Query: 26 TPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYP 85
V W + A+T + +LE G+ + L + L ID W P
Sbjct: 338 RKVTIGYIPWDEGIASTYLWKEVLERR-GFTVQTQQLEAGALYTGLAGGQIDFQTNSWLP 396
Query: 86 SLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGI 145
+ ++ + LAV G+ S D+ +I GI
Sbjct: 397 VTHDQYWKKYGD-RLEDLGSWYGPTSLELAVPAYVD--GVDSLADLKGRSGTFKGRIIGI 453
Query: 146 EPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINS 205
EP + + + + + +++ S ++++R + P + W PH S
Sbjct: 454 EPSAGMMRLLKEEVLPAYGLEDEYEVVDGSTPGMLAELKRAYQKKEPVLTTLWSPHWAYS 513
Query: 206 DLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNN 265
+ L +E G G+ V+T+ R + P I LK+ K + + I
Sbjct: 514 SYPLKKLGDPKEAWGSGDM-VHTLARKGFSSDHPEIGAWLKDFKLTEKQLTGLEAEIQRA 572
Query: 266 KQDRQF-VGRTMLRTHPDL 283
+ + RT L+ +P +
Sbjct: 573 GKGEEQTAVRTWLKKNPQV 591
>gi|116053250|ref|YP_793573.1| putative ABC transporter, periplasmic substrate-binding protein
[Pseudomonas aeruginosa UCBPP-PA14]
gi|254244016|ref|ZP_04937338.1| hypothetical protein PA2G_04849 [Pseudomonas aeruginosa 2192]
gi|296391951|ref|ZP_06881426.1| putative ABC transporter, periplasmic substrate-binding protein
[Pseudomonas aeruginosa PAb1]
gi|115588471|gb|ABJ14486.1| putative ABC transporter, periplasmic substrate-binding protein
[Pseudomonas aeruginosa UCBPP-PA14]
gi|126197394|gb|EAZ61457.1| hypothetical protein PA2G_04849 [Pseudomonas aeruginosa 2192]
Length = 340
Score = 165 bits (418), Expect = 7e-39, Method: Composition-based stats.
Identities = 59/344 (17%), Positives = 106/344 (30%), Gaps = 46/344 (13%)
Query: 3 KILAVCLFLTTFSISYARDADSC---TPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+ + L L S A C V FA W TT + +LE+ G +T+
Sbjct: 5 RQILAVLALGASLASQTAVAAECPYPGKVVFAGLNWESGMFTTDLLRYVLEKGYGCETDA 64
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+L+ I + W E G + V E ++GA V +
Sbjct: 65 LPGNTVTMENALRQNDIQVTGEQWA-GRSPVWRAAEEAGEVFSVGETVKGATEGWWVPEY 123
Query: 120 -----------GFALGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINN 161
A ++S D+ +YK + Y G +
Sbjct: 124 LVKGDPQRGIEAKAPELRSVADLPRYKALFRDPEEPAKGRFYNCPTGWTCEIVNSQKLKA 183
Query: 162 NKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLN------------- 208
+ + A + I R P +F W P P+
Sbjct: 184 YRLQDSYTNFRTGTGPALDAAISAAFRRGEPVLFYYWSPTPLMGRFKLVQLEEPPFSEKA 243
Query: 209 IHYLPGGEEISGFG----EASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILN 264
L + G A + V D+ DK P + L + ++ + L NE++ +
Sbjct: 244 WATLSDPKNPDPIGSRSLPAKITIGVSRDFHDKAPALVELFRKVEIPLPLFNELLADMAQ 303
Query: 265 NKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
N ++ V LR H ++ +W+ + + +L+ +
Sbjct: 304 NHREVGEVRAQFLRQHREIWSHWVP-------AEVAARLDTSLK 340
>gi|152985908|ref|YP_001351155.1| hypothetical protein PSPA7_5836 [Pseudomonas aeruginosa PA7]
gi|150961066|gb|ABR83091.1| hypothetical protein PSPA7_5836 [Pseudomonas aeruginosa PA7]
Length = 356
Score = 165 bits (418), Expect = 7e-39, Method: Composition-based stats.
Identities = 59/344 (17%), Positives = 102/344 (29%), Gaps = 46/344 (13%)
Query: 3 KILAVCLFLTTFSISYARDADSC---TPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+ L L S A C V FA W TT + +LE+ G +T+
Sbjct: 21 RQFLAVLALGASLASQAAAGAQCPYPGKVVFAGLNWESGMFTTDLLRYVLEKGYGCETDA 80
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+L+ I + W E G + V E ++GA V +
Sbjct: 81 LPGNTVTMESALRQNDIQVTGEQWA-GRSPVWRAAEEAGEVFSVGETVKGATEGWWVPEY 139
Query: 120 -----------GFALGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINN 161
A +KS D+ +YK+ + Y G +
Sbjct: 140 LVEGDPQRGIEAKAPELKSVADLPRYKELFRDPEEPGKGRFYNCPTGWTCEIVNSQKLKA 199
Query: 162 NKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLN------------- 208
K + A + I R P +F W P P+
Sbjct: 200 YKLQDSYTNFRTGTGPALDAAISAAFRRGEPVLFYYWSPTPLMGRYKLVQLEEPPFSAKA 259
Query: 209 IHYLPGGEEISGFG----EASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILN 264
L + G A + V D+ DK P + L + ++ + L N ++ +
Sbjct: 260 WATLSDPKNPDPIGSRSLPAKITIGVSRDFHDKAPALVELFRRVEIPLPLFNALLADMAQ 319
Query: 265 NKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
+ D V L H ++ W+ + + +L+ +
Sbjct: 320 HHHDVGEVRARFLSEHREIWSRWMP-------AEVAARLDASLK 356
>gi|254463270|ref|ZP_05076686.1| glycine betaine transporter, substrate-binding protein
[Rhodobacterales bacterium HTCC2083]
gi|206679859|gb|EDZ44346.1| glycine betaine transporter, substrate-binding protein
[Rhodobacteraceae bacterium HTCC2083]
Length = 325
Score = 165 bits (417), Expect = 7e-39, Method: Composition-based stats.
Identities = 50/332 (15%), Positives = 96/332 (28%), Gaps = 31/332 (9%)
Query: 1 MYKILAVCLFLTTFSISYA---RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M K++ + D +C V + W A TA++ ++E+ G
Sbjct: 1 MKKMVTGAAAAVALTFGANVALADGHACGDVSITEMDWASSAVVTAVSKFLMEQGYGCNV 60
Query: 58 NIKLLAVPVTFRSLKN-KGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
I + SL DI W S + + ++L G +
Sbjct: 61 QIVPSSTVPALTSLAETGEPDILTEVWANSTPSYEPLLADGKLVELANVLSDGGVEAWWI 120
Query: 117 NDVGFA--LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR-LIE 173
+ +++ I +G K + G + + + G
Sbjct: 121 PAYLAESNPELTTWEGIMANPAAVGGKFHDCPSGWACDIINNNNLKALNIDGTGLERFQH 180
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSD-----------------LNIHYLPGGE 216
S + I + P + W P + N
Sbjct: 181 GSGETLQTSIAAAYGDKAPWLGYYWAPTAVLGKYPMVQVKVGEYDAEAHSCNGDVDCADP 240
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
+ S + A V T ++D+ P I+ L+ + F+ A +++ L+N
Sbjct: 241 KYSAYPAAKVVTAASQSFVDEKPAIAELMSKVSFTNAQMGDVLAWRLDNNASYDEAAVYF 300
Query: 277 LRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
L +PD+ WL D +L +
Sbjct: 301 LTNNPDVWSGWLN-------DDAKAKLAALIK 325
>gi|254244023|ref|ZP_04937345.1| hypothetical protein PA2G_04856 [Pseudomonas aeruginosa 2192]
gi|126197401|gb|EAZ61464.1| hypothetical protein PA2G_04856 [Pseudomonas aeruginosa 2192]
Length = 322
Score = 165 bits (417), Expect = 8e-39, Method: Composition-based stats.
Identities = 48/303 (15%), Positives = 101/303 (33%), Gaps = 28/303 (9%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGY 82
+S V+FA W T + +L + G T+ ++L I +F
Sbjct: 30 ESGKAVKFAGLNWESGTLLTELMQFVLAKGYGCTTDSLPGNSITMEQALSTNDIQVFAEE 89
Query: 83 WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV-----------GFALGIKSYQDI 131
W G + V E + GA+ V A ++S D+
Sbjct: 90 WI-GRSDAWNKAAAAGKVVGVGEPIVGAEEGWYVPRYVIEGDPQRKLEAKAPKLRSIADL 148
Query: 132 AKYKKELGA-------KIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
A+Y + + Y G +M+ + + A + +
Sbjct: 149 AQYAEVFRDPEEPGKGRFYNCPAGWTCELENSEMLKSYGLEETFTNFRPGTGPALDAAVL 208
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
R P++F W P P+ ++ L + + + + D+ P + +
Sbjct: 209 SSYRRGEPSLFYYWSPTPLMGRADLVRLEERPGVDK--RIRIQVGLSRTFHDQAPELVAV 266
Query: 245 LKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLE 304
L+ + L N + + ++ D + R L+ HP++ W+ +D ++++E
Sbjct: 267 LEKVNLPAELLNSDLARMAKDRIDAARLAREFLKEHPEVWHAWVD-------EDAAKKIE 319
Query: 305 RFM 307
+
Sbjct: 320 AAL 322
>gi|110634884|ref|YP_675092.1| substrate-binding region of ABC-type glycine betaine transport
system [Mesorhizobium sp. BNC1]
gi|110285868|gb|ABG63927.1| Substrate-binding region of ABC-type glycine betaine transport
system [Chelativorans sp. BNC1]
Length = 342
Score = 165 bits (417), Expect = 8e-39, Method: Composition-based stats.
Identities = 45/329 (13%), Positives = 89/329 (27%), Gaps = 44/329 (13%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKG 75
S + P+R AD W A T + + I + G K + +L
Sbjct: 22 ASAESYCEQGKPLRLADVSWESGAFLTELLTKIFGDGYGCKIEKVSGNSLIMSHALITGD 81
Query: 76 IDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA------------- 122
IDI+ W + + EG+++ A+ V D
Sbjct: 82 IDIYPEQWV-GRTEVMNKARAEGTVRAAGHPYLDAREGWYVPDYVVNGDPERGIEPLAPE 140
Query: 123 -------LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
K + ++ + G + + + S
Sbjct: 141 LKSVEQLADPKIRALFSDPEEPSKGRFLNCPTGWSCERLNTAKLEGYGLDEYYTNFLPGS 200
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE----------------IS 219
A +++ P +F W P + + L
Sbjct: 201 GAALDAEVASSYLRKQPVLFYYWNPTALMGTYKLLQLEEPAYSDECWDGLTSSDPKTQAC 260
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
F V V + D+ P+I +L + NE + + K + L+
Sbjct: 261 AFPLGEVVYDVNVKFADQAPDIIEILSKATIPLETINEALAYMAKEKAEPADAATWFLKN 320
Query: 280 HPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
+ L NW+ + + ++ + +N
Sbjct: 321 YAHLWTNWVS-------TEAAEKINQGLN 342
>gi|289523867|ref|ZP_06440721.1| histidine transporter, periplasmic histidine-binding protein
[Anaerobaculum hydrogeniformans ATCC BAA-1850]
gi|289502523|gb|EFD23687.1| histidine transporter, periplasmic histidine-binding protein
[Anaerobaculum hydrogeniformans ATCC BAA-1850]
Length = 350
Score = 165 bits (417), Expect = 8e-39, Method: Composition-based stats.
Identities = 43/328 (13%), Positives = 99/328 (30%), Gaps = 32/328 (9%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
+ + L + S + V F+D W I + + ++E+ Y+T+
Sbjct: 29 LFSALLVVMLCSGIVSATP---KKVVFSDLSWDSIQFHNRVMAFLMEKGWDYETDFLFSE 85
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+ +L+ + + + W ++ + G + + A+ V
Sbjct: 86 EMPGYVALERGDVHVVLEVWTEGQLEWWQGATKAGKVIDLGTVFPNARSGWYVPYYVAEG 145
Query: 124 GI--------------KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
+ + + + G + D I K
Sbjct: 146 DPEKGIPSVRSIEDIREHWMIFKNPENPEMGRFINAPTGWAAHTINKDKIKGYGLEDKLE 205
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE---------ISG 220
S A + I + + P V WEP P+ +L++ +
Sbjct: 206 PFDTGSATALRTVIVTAYQRHEPIVAYYWEPTPLLGELDMVMIEEPPYDPEIWETTHACA 265
Query: 221 FGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+V V ++ + LL+ ++ NE + + NN D L+ +
Sbjct: 266 SPAFTVAKAVNPAWIQANEEVRGLLERYHMTLEKTNEALAWMKNNGYDVDKTAIWFLKEN 325
Query: 281 PDLLKNWLIGVTTFDGQDPSRQLERFMN 308
DL W+ ++ +++E+ +
Sbjct: 326 TDLWHQWVED------EEKIKRIEKALK 347
>gi|302546698|ref|ZP_07299040.1| glycine betaine/proline ABC transporter, permease/substrate-binding
protein [Streptomyces hygroscopicus ATCC 53653]
gi|302464316|gb|EFL27409.1| glycine betaine/proline ABC transporter, permease/substrate-binding
protein [Streptomyces himastatinicus ATCC 53653]
Length = 873
Score = 165 bits (417), Expect = 9e-39, Method: Composition-based stats.
Identities = 58/294 (19%), Positives = 108/294 (36%), Gaps = 8/294 (2%)
Query: 14 FSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKN 73
+ + + V W + A+T + +LEE G+K ++ V + +
Sbjct: 326 TGPTVSANVGKGQSVNLGYINWDEGVASTFLWKELLEER-GFKPKVQSYDVGALWTGMAA 384
Query: 74 KGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAK 133
ID+ W P+ ++ ++ + +AV G+KS D+
Sbjct: 385 GNIDMQTDAWLPATHATYWAKYKD-KLENLGSWYDKTSLEVAVPSYV--KGVKSLDDLKS 441
Query: 134 YKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPA 193
KI GIEPG + + D + K ++L++ S A SQ+ R P
Sbjct: 442 KSSTFKDKIIGIEPGAGEMKLMQDKVMPGYGLNKDYQLVKGSTAAMLSQLERSYAKKEPI 501
Query: 194 VFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVA 253
W PH + + L + G G+ + T+ R + K P +++ +KN K S
Sbjct: 502 AVTLWSPHWAYNKYKLTKLKDPKGAFGKGD-HIDTIARKGFSKKNPQVAKWMKNFKLSEK 560
Query: 254 LENEMMKLILNNKQ-DRQFVGRTMLRTHPDLLKNW--LIGVTTFDGQDPSRQLE 304
+ I + + Q R L+ +P + + G G+D +
Sbjct: 561 QLTSLEAAIQDAGKGKEQQGVRAWLKDNPGIASKLAPVPGGADQKGKDAGAAPK 614
Score = 151 bits (382), Expect = 9e-35, Method: Composition-based stats.
Identities = 49/259 (18%), Positives = 96/259 (37%), Gaps = 6/259 (2%)
Query: 29 RFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLE 88
+ W + ATT + ILE+ GYK +IK V F + +D+ W P +
Sbjct: 614 KIGYFPWDEDIATTYLWKNILEKR-GYKPSIKQYDVGSMFTGMSTGQVDVEFDGWLPVAQ 672
Query: 89 KFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPG 148
K ++ ++ V +AV +KS D+ KI GIEPG
Sbjct: 673 KQYWDRYKK-NLVDVGSWYDKTSLEIAVPSYV--KDVKSLADLKGKSDLFKGKIIGIEPG 729
Query: 149 NEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLN 208
+ + + K +++ + S A +Q+ R P + W PH S
Sbjct: 730 TGEMKILKSKVLKAYGLDKEYKVSDGSSPAMLAQLERSYAKKEPVAVVLWTPHWAYSKYK 789
Query: 209 IHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQ- 267
+ L ++ G ++T+ + K P + LK + + + + + +
Sbjct: 790 LTKLADPQKAFG-ASNQLHTLANKSFPKKFPEFNGWLKKWHMTEKELASLEQAVQDAGKG 848
Query: 268 DRQFVGRTMLRTHPDLLKN 286
+ + + + +P ++
Sbjct: 849 NEEEGVQKWIDANPGIVDK 867
>gi|224534303|ref|ZP_03674881.1| glycine betaine, L-proline ABC transporter,
glycine/betaine/L-proline-binding protein [Borrelia
spielmanii A14S]
gi|224514405|gb|EEF84721.1| glycine betaine, L-proline ABC transporter,
glycine/betaine/L-proline-binding protein [Borrelia
spielmanii A14S]
Length = 291
Score = 165 bits (417), Expect = 9e-39, Method: Composition-based stats.
Identities = 52/289 (17%), Positives = 108/289 (37%), Gaps = 8/289 (2%)
Query: 1 MYKILA-VCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M+K+ C+ + S + + + V+ A W A T + V+ E +GY I
Sbjct: 1 MHKLFIGFCICIVFLSCDERKSSKNLKSVKIAYVNWGGETAATNVLKVVFE-KIGYNAEI 59
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ V ++ L + +D + W P+ +KF L + + N +G V
Sbjct: 60 FSVTTSVMYQYLASGKVDGTVSSWVPTADKFYYEKL-KTKFVDLGANYEGTIQGFVVPSY 118
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
I S ++ + K+ GI+ G ++ S + L+ +SE
Sbjct: 119 VP---ISSISELKGKGAKFKNKMIGIDAGAGTQIVTEQALDYYGLSK-EYELVPSSESVM 174
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+ + + N + W+PH S +I +L ++ G SV+T+VR +
Sbjct: 175 LASLDSSIKRNEWILVPLWKPHWAFSRYDIKFLDDP-DLIMGGIESVHTLVRLGLENDDL 233
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+ + + ++ L +M + + +++K W+
Sbjct: 234 DAYYVFDHFYWNDDLILPLMDRNDKESGKEYRNAVEFVENNKEIVKMWV 282
>gi|49083762|gb|AAT51134.1| PA5096 [synthetic construct]
Length = 323
Score = 165 bits (417), Expect = 9e-39, Method: Composition-based stats.
Identities = 48/303 (15%), Positives = 98/303 (32%), Gaps = 28/303 (9%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGY 82
+S V+FA W T + +L + G T+ ++L I +F
Sbjct: 30 ESGKAVKFAGLNWESGTLLTELMQFVLAKGYGCTTDSLPGNSITMEQALSTNDIQVFAEE 89
Query: 83 WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV-----------GFALGIKSYQDI 131
W G + V E + GA V A ++S D+
Sbjct: 90 WI-GRSDAWNKAAAAGKVVGVGEPIVGAVEGWYVPRYVIEGDSQRKLEAKAPKLRSIADL 148
Query: 132 AKYKKELGA-------KIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
A+Y + + Y G +M+ + + A + +
Sbjct: 149 AQYAEVFRDPEEPGKGRFYNCPAGWTCELENSEMLKSYGLEETFTNFRPGTGPALDAAVL 208
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
R P +F W P P+ + L + + + + D+ P + +
Sbjct: 209 SSYRRGEPILFYYWSPTPLMGRAGLVRLEERPGVDK--RIRIQVGLSRTFHDQAPELVAV 266
Query: 245 LKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLE 304
L+ + L N + + ++ D + R L+ HP++ W+ +D ++++E
Sbjct: 267 LEKVNLPAELLNSDLARMAKDRIDAARLAREFLKEHPEVWHAWVD-------EDAAKKIE 319
Query: 305 RFM 307
+
Sbjct: 320 AAL 322
>gi|71083989|ref|YP_266709.1| substrate-binding region of ABC-type glycine betaine transport
system [Candidatus Pelagibacter ubique HTCC1062]
gi|91762947|ref|ZP_01264912.1| Substrate-binding region of ABC-type glycine betaine transport
system [Candidatus Pelagibacter ubique HTCC1002]
gi|71063102|gb|AAZ22105.1| Substrate-binding region of ABC-type glycine betaine transport
system [Candidatus Pelagibacter ubique HTCC1062]
gi|91718749|gb|EAS85399.1| Substrate-binding region of ABC-type glycine betaine transport
system [Candidatus Pelagibacter ubique HTCC1002]
Length = 314
Score = 165 bits (417), Expect = 9e-39, Method: Composition-based stats.
Identities = 41/312 (13%), Positives = 89/312 (28%), Gaps = 27/312 (8%)
Query: 1 MYKILAVCLFLTTFSISYAR---DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M KI+++ L +S+A ADS P+ W+ + I E +G
Sbjct: 1 MKKIVSLMSALVISVVSFAGISNAADSKKPIVIPTHNWSSQIVMAHVIGGIFES-MGNNV 59
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+ S++ + + W + K L++G + ++ +
Sbjct: 60 KYVNTDSQAVYESIRLGDVSLSHEVWESAFGKSFTTALDKGGLVDWGDHEARTLEDMGYP 119
Query: 118 DVGFALGI------KSYQDIAKYKKELGAKIYGI------EPGNEGNQRILDMINNNKFS 165
+ G+ + K G P I ++
Sbjct: 120 NWVAEKGLCPGLPDWTALKNPACAKNFTTPDSGGKGRMLEGPQTWHGDLIPQRVDALGLG 179
Query: 166 LKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEP-----------HPINSDLNIHYLPG 214
S A ++++ ++ + +W P G
Sbjct: 180 DLWTVKFAGSADALWAELVAAEKEGRGTIIFNWTPNFTDGAGFTFIDFPPYTAGCRPEDG 239
Query: 215 GEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGR 274
G+ G + + V +D+ P + K + FS + M L+ +K + +
Sbjct: 240 GDGKCGSPDGYLKKAVNADFPKTHPAAAATFKKMSFSTSHIGAMAALVDVDKMTHEDAAK 299
Query: 275 TMLRTHPDLLKN 286
L + +
Sbjct: 300 KWLADNKSVWTP 311
>gi|15600289|ref|NP_253783.1| binding protein component of ABC transporter [Pseudomonas
aeruginosa PAO1]
gi|9951391|gb|AAG08481.1|AE004922_6 probable binding protein component of ABC transporter [Pseudomonas
aeruginosa PAO1]
Length = 322
Score = 165 bits (416), Expect = 1e-38, Method: Composition-based stats.
Identities = 48/303 (15%), Positives = 98/303 (32%), Gaps = 28/303 (9%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGY 82
+S V+FA W T + +L + G T+ ++L I +F
Sbjct: 30 ESGKAVKFAGLNWESGTLLTELMQFVLAKGYGCTTDSLPGNSITMEQALSTNDIQVFAEE 89
Query: 83 WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV-----------GFALGIKSYQDI 131
W G + V E + GA V A ++S D+
Sbjct: 90 WI-GRSDAWNKAAAAGKVVGVGEPIVGAVEGWYVPRYVIEGDPQRKLEAKAPKLRSIADL 148
Query: 132 AKYKKELGA-------KIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
A+Y + + Y G +M+ + + A + +
Sbjct: 149 AQYAEVFRDPEEPGKGRFYNCPAGWTCELENSEMLKSYGLEETFTNFRPGTGPALDAAVL 208
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
R P +F W P P+ + L + + + + D+ P + +
Sbjct: 209 SSYRRGEPILFYYWSPTPLMGRAGLVRLEERPGVDK--RIRIQVGLSRTFHDQAPELVAV 266
Query: 245 LKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLE 304
L+ + L N + + ++ D + R L+ HP++ W+ +D ++++E
Sbjct: 267 LEKVNLPAELLNSDLARMAKDRIDAARLAREFLKEHPEVWHAWVD-------EDAAKKIE 319
Query: 305 RFM 307
+
Sbjct: 320 AAL 322
>gi|254238191|ref|ZP_04931514.1| hypothetical protein PACG_04316 [Pseudomonas aeruginosa C3719]
gi|126170122|gb|EAZ55633.1| hypothetical protein PACG_04316 [Pseudomonas aeruginosa C3719]
Length = 340
Score = 165 bits (416), Expect = 1e-38, Method: Composition-based stats.
Identities = 59/344 (17%), Positives = 106/344 (30%), Gaps = 46/344 (13%)
Query: 3 KILAVCLFLTTFSISYARDADSC---TPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+ + L L S A C V FA W TT + +LE+ G +T+
Sbjct: 5 RQIFAVLALGASLASQTAVAAECPYPGKVVFAGLNWESGMFTTDLLRYVLEKGYGCETDA 64
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+L+ I + W E G + V E ++GA V +
Sbjct: 65 LPGNTVTMENALRQNDIQVTGEQWA-GRSPVWRAAEEAGEVFSVGETVKGATEGWWVPEY 123
Query: 120 -----------GFALGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINN 161
A ++S D+ +YK + Y G +
Sbjct: 124 LVKGDPQRGIEAKAPELRSVADLPRYKALFRDPEEPAKGRFYNCPTGWTCEIVNSQKLKA 183
Query: 162 NKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLN------------- 208
+ + A + I R P +F W P P+
Sbjct: 184 YRLQDSYTNFRTGTGPALDAAISAAFRRGEPVLFYYWSPTPLMGRFKLVQLEEPPFSEKA 243
Query: 209 IHYLPGGEEISGFG----EASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILN 264
L + G A + V D+ DK P + L + ++ + L NE++ +
Sbjct: 244 WATLSDPKNPDPIGSRSLPAKITIGVSRDFHDKAPALVELFRKVEIPLPLFNELLADMAQ 303
Query: 265 NKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
N ++ V LR H ++ +W+ + + +L+ +
Sbjct: 304 NHREVGEVRAQFLRQHREIWSHWVP-------AEVAARLDTSLK 340
>gi|111114967|ref|YP_709585.1| glycine betaine, L-proline ABC transporter, binding protein
[Borrelia afzelii PKo]
gi|110890241|gb|ABH01409.1| glycine betaine, L-proline ABC transporter, binding protein
[Borrelia afzelii PKo]
Length = 294
Score = 165 bits (416), Expect = 1e-38, Method: Composition-based stats.
Identities = 52/287 (18%), Positives = 106/287 (36%), Gaps = 7/287 (2%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+ C+FL S + + + V+ A W A T + V+ E +GY I
Sbjct: 6 KLFIGFCIFLIFLSCDEKKSSKNLKSVKIAYVNWGGETAATNVLKVVFE-KMGYNAEIFS 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V ++ L + +D + W P+ +KF L + + N +G V
Sbjct: 65 VTTSVMYQYLASGKVDGTVSSWVPTADKFYYEKL-KTKFVDLGANYEGTIQGFVVPSYVP 123
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
I S ++ + K+ GI+ G + S + L+ +SE +
Sbjct: 124 ---ISSISELKGKGDKFKNKMIGIDAGAGTQIVTEQALEYYGLSK-EYELVPSSESVMLA 179
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNI 241
+ + N + W+PH S +I +L ++ G SV+T+VR + ++
Sbjct: 180 SLDSSIKRNEWILVPLWKPHWAFSRYDIKFLDDP-DLIMGGIESVHTLVRLGLENDDLDV 238
Query: 242 SRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+ + ++ L +M + + +++K W+
Sbjct: 239 YYVFDHFYWNDDLILPLMDRNDKEPGKEYRNAVEFVENNKEIVKMWV 285
>gi|77460565|ref|YP_350072.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas fluorescens Pf0-1]
gi|77384568|gb|ABA76081.1| Substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas fluorescens Pf0-1]
Length = 337
Score = 165 bits (416), Expect = 1e-38, Method: Composition-based stats.
Identities = 51/342 (14%), Positives = 106/342 (30%), Gaps = 43/342 (12%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+ +L L T + + A+ P+ F D W + T + +I+E+ GY T+
Sbjct: 4 LKTLLGSSLLALTLTAGHVVAAEKTAPIHFGDITWESGSFITEVLRLIVEKGYGYPTDTL 63
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ +L I + W EG + + + ++GA V +
Sbjct: 64 PGSTVSLEAALAKNDIQVIGEEWA-GRSPAWVKAAAEGKVFGLGDTVKGATEGWWVPEYV 122
Query: 121 FA-----------LGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNN 162
+KS D+ +YK + G +
Sbjct: 123 IKGDPERGIKPLAPELKSVADLPRYKDVFKDPEDPSRGRFLNSPTGWTSEIVNSQKLKAY 182
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG------- 215
+ S A +++ + P +F W P P+ + L
Sbjct: 183 ALNDSFVNFRTGSGAALDAEVASSIKRGKPVLFYYWSPTPLLGRFKLVKLEEPPFDAEAW 242
Query: 216 ----------EEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNN 265
+ + AS+ V + + + P + + + + L N+ + +
Sbjct: 243 KTLADANNPNPKGTRSMPASLAIGVSAPFKAQYPELVTFFEKVDLPIDLLNQTLAGMSEK 302
Query: 266 KQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+Q + V LR P + K W+ G D + ++ +
Sbjct: 303 RQQPRQVAEAFLRDQPQVWKPWVPG-------DVANKVSSSL 337
>gi|15600296|ref|NP_253790.1| hypothetical protein PA5103 [Pseudomonas aeruginosa PAO1]
gi|9951399|gb|AAG08488.1|AE004923_4 hypothetical protein PA5103 [Pseudomonas aeruginosa PAO1]
Length = 340
Score = 165 bits (416), Expect = 1e-38, Method: Composition-based stats.
Identities = 59/344 (17%), Positives = 106/344 (30%), Gaps = 46/344 (13%)
Query: 3 KILAVCLFLTTFSISYARDADSC---TPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+ + L L S A C V FA W TT + +LE+ G +T+
Sbjct: 5 RQILAVLALGASLASQTAVAAECPYPGKVVFAGLNWESGMFTTDLLRYVLEKGYGCETDA 64
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+L+ I + W E G + V E ++GA V +
Sbjct: 65 LPGNTVTMENALRQNDIQVTGEQWA-GRSPVWRAAEEAGEVFSVGETVKGATEGWWVPEY 123
Query: 120 -----------GFALGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINN 161
A ++S D+ +YK + Y G +
Sbjct: 124 LVKGDPQRGIEAKAPELRSVADLPRYKALFRDPEEPAKGRFYNCPTGWTCEIVNSQKLKA 183
Query: 162 NKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLN------------- 208
+ + A + I R P +F W P P+
Sbjct: 184 YRLQDSYTNFRTGTGPALDAAISAAFRRGEPVLFYYWSPTPLMGRFKLVQLEEPPFSEKA 243
Query: 209 IHYLPGGEEISGFG----EASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILN 264
L + G A + V D+ DK P + L + ++ + L NE++ +
Sbjct: 244 WATLSDPKNPDPIGSRSLPAKITVGVSRDFHDKAPALVELFRKVEIPLPLFNELLADMAQ 303
Query: 265 NKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
N ++ V LR H ++ +W+ + + +L+ +
Sbjct: 304 NHREVGEVRAQFLRQHREIWSHWVP-------AEVAARLDTSLK 340
>gi|313110141|ref|ZP_07796043.1| putative ABC transporter, periplasmic substrate-binding protein
[Pseudomonas aeruginosa 39016]
gi|310882545|gb|EFQ41139.1| putative ABC transporter, periplasmic substrate-binding protein
[Pseudomonas aeruginosa 39016]
Length = 340
Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats.
Identities = 58/324 (17%), Positives = 100/324 (30%), Gaps = 39/324 (12%)
Query: 3 KILAVCLFLTTFSISYARDADSC---TPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+ + L L S A C V FA W TT + +LE+ G +T+
Sbjct: 5 RQILAVLALGASLASQTAVAAECPYPGKVVFAGLNWESGMFTTDLLRYVLEKGYGCETDA 64
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+L+ I + W E G + V E ++GA V +
Sbjct: 65 LPGNTVTMENALRQNDIQVTGEQWA-GRSPVWRAAEEAGEVFSVGETVKGATEGWWVPEY 123
Query: 120 -----------GFALGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINN 161
A ++S D+ +YK + Y G +
Sbjct: 124 LVKGDPQRGIEAKAPELRSVADLPRYKALFRDPEEPAKGRFYNCPTGWTCEIVNSQKLKA 183
Query: 162 NKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLN------------- 208
+ + A + I R P +F W P P+
Sbjct: 184 YRLQDSYTNFRTGTGPALDAAISAAFRRGEPVLFYYWSPTPLMGRFKLVQLEEPPFSEKA 243
Query: 209 IHYLPGGEEISGFG----EASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILN 264
L + G A + V D+ DK P + L + ++ + L NE++ +
Sbjct: 244 WATLSDPKNPDPIGSRSLPAKITIGVSRDFHDKAPALVELFRKVEIPLPLFNELLADMAQ 303
Query: 265 NKQDRQFVGRTMLRTHPDLLKNWL 288
N ++ V LR H ++ +W+
Sbjct: 304 NHREVGEVRAQFLRQHREIWSHWV 327
>gi|330899045|gb|EGH30464.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. japonica str.
M301072PT]
Length = 322
Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats.
Identities = 53/330 (16%), Positives = 105/330 (31%), Gaps = 33/330 (10%)
Query: 1 MYKILAVCLFLTTFSISYARD-----ADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M K L L S +S PV+FA W T + V+L++ G
Sbjct: 3 MKKALLTTLVSAGLLASAGASQAAGWCESGKPVKFAGLNWESAMLLTDILQVVLDKGYGC 62
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
+ +L I IF W + G + V + GA
Sbjct: 63 TVDALPGNSIAMENALGTNDIQIFAEEWV-GRSEVWNKAAAAGKVVGVGAPIVGAVEGWY 121
Query: 116 VNDV-----------GFALGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILD 157
V A +KS D+A+Y + Y G +
Sbjct: 122 VPRYVIEGDAKRKLEAKAPNLKSISDLAQYSAVFKDQEEPGKGRFYNCPAGWTCELENSE 181
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
M+ + K + A + I + P + W P P+ +++ L +
Sbjct: 182 MLKSYGLESKYTNFRPGTGPALDAAILSSYKRGEPILTYYWSPTPLMGQVDLVRLEE--K 239
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTML 277
+ V + D+ P + +L+ + + L N+ + + + + + + L
Sbjct: 240 AGVNKTIDIKVGVSKVFHDEAPELVAILEKVNLPIDLLNQNLGRMAKERIESPKLAKIFL 299
Query: 278 RTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ HP + W+ +D +++++ +
Sbjct: 300 KEHPVVWHKWVS-------EDAAKKVDASL 322
>gi|26990270|ref|NP_745695.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas putida KT2440]
gi|24985220|gb|AAN69159.1|AE016550_1 amino acid transporter, periplasmic amino acid-binding protein,
putative [Pseudomonas putida KT2440]
Length = 338
Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats.
Identities = 50/346 (14%), Positives = 104/346 (30%), Gaps = 47/346 (13%)
Query: 1 MYKI----LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
M I + L + S A A+ P+ F GW A TT + +I+E GY+
Sbjct: 1 MKSISTLLAGLLLTVGLASTDSAASAEQPAPIHFGAIGWESGALTTEILRLIVERGYGYR 60
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
T+ + +L + + W + G + + + ++ A+ V
Sbjct: 61 TDTLPGSTVSMEVALARNDLQVIAEEWA-GRSPAWVKAEQAGQVFALGDTVKNAEEGWWV 119
Query: 117 NDVGFA-----------LGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDM 158
+ S +D+ +Y + + G
Sbjct: 120 PAYVIEGDAARNLKPVAPELHSVEDLKRYPQVFSDPESPGKGRFLNSPSGWTSETVNSQK 179
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLN---------- 208
+ S A ++I R P +F W P P+
Sbjct: 180 LKAYGLDGLYNNFRSGSGAAMDAEIGSAIRRGKPVLFYYWNPTPLMGRYKLIRLEEPPFD 239
Query: 209 ---IHYLPGGEEISGFG----EASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKL 261
L + G A + V + + P++ + + + + N+ + +
Sbjct: 240 AQAWATLTDPANPNPKGSRSLPAKLSIGVSKAFRENYPDLVSVFEQVDLPIDRLNKALAV 299
Query: 262 ILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ + + T LR + ++ K WL D + ++E +
Sbjct: 300 MSEKRTPPREAALTFLRDNREVWKAWLP-------ADIAAKVEASL 338
>gi|317060036|ref|ZP_07924521.1| glycine betaine/L-proline ABC transporter [Fusobacterium sp. D12]
gi|313685712|gb|EFS22547.1| glycine betaine/L-proline ABC transporter [Fusobacterium sp. D12]
Length = 267
Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats.
Identities = 60/253 (23%), Positives = 102/253 (40%), Gaps = 11/253 (4%)
Query: 29 RFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLE 88
+ W A+T + +L++ GY + L V + S+ D + W P+
Sbjct: 26 TLSYVNWDTEIASTHVVGELLKDK-GYDVRLVPLDNGVMWESIATGEADAMVSAWLPTTH 84
Query: 89 KFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPG 148
+ I+ + NL+GA+ L V A I A K E I GIEPG
Sbjct: 85 FSYYQKH-KTQIEDLGANLEGARIGLVVPVYMAANSI------ADLKHEANQVITGIEPG 137
Query: 149 NEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLN 208
+LK + + +S A +++ N V SW PH + D +
Sbjct: 138 AGVVLSAQKAKKLYP-NLKNWEIQCSSTGAMTVSLKKAIENKKDIVITSWSPHWMFQDFD 196
Query: 209 IHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQD 268
+ YL + + G GE +++T+VR + P + ++LKN ++ E+M I N +
Sbjct: 197 LKYLEDPKGVMGEGE-NIHTIVRKGLQQEKPEVYQILKNFHWTTQDIEEVMLDIK-NGME 254
Query: 269 RQFVGRTMLRTHP 281
+ R + TH
Sbjct: 255 VEKAARKWVDTHK 267
>gi|307331451|ref|ZP_07610568.1| Substrate-binding region of ABC-type glycine betaine transport
system [Streptomyces violaceusniger Tu 4113]
gi|306882894|gb|EFN13963.1| Substrate-binding region of ABC-type glycine betaine transport
system [Streptomyces violaceusniger Tu 4113]
Length = 872
Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats.
Identities = 56/289 (19%), Positives = 107/289 (37%), Gaps = 9/289 (3%)
Query: 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDI 78
+ + V W + A+T + +LE+ G+K ++ V + + ID
Sbjct: 331 SANVGKGQSVNIGYINWDEGVASTFLWKELLEQR-GFKPKVQSYDVGALYTGMAAGNIDF 389
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL 138
W P+ ++ ++ + +AV G+K+ +D+ K
Sbjct: 390 ETDSWLPTTHASYWAKYKD-KLENLGSWYGPTSLEVAVPSYV--KGVKTLEDLEKKSGTF 446
Query: 139 GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
KI GIEPG + + D + K F L++ S A SQ+ R P W
Sbjct: 447 KKKIVGIEPGAGEMKLMQDKVMPGYGLNKNFSLVKGSTAAMLSQLDRSYAKKEPIAVTLW 506
Query: 199 EPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEM 258
PH + ++ L + G G+ + ++ R + P +++ +K+ K +
Sbjct: 507 SPHWAYNKYDLIKLKDTKGAFGKGD-RIDSLARKGFSKDNPQVAKWMKDFKLDEKQLTSL 565
Query: 259 MKLILNNKQ-DRQFVGRTMLRTHPDLLKNWLIGVT--TFDGQDPSRQLE 304
I + + Q R L+ +P L+ L V G+D +
Sbjct: 566 EAAIQDAGKGKEQEGVRAWLKKNPSLVNK-LAPVPGGEQKGKDAGAAPK 613
Score = 153 bits (385), Expect = 4e-35, Method: Composition-based stats.
Identities = 50/259 (19%), Positives = 95/259 (36%), Gaps = 6/259 (2%)
Query: 29 RFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLE 88
+ W + ATT + +LE GYK +IK V F + +D+ W P +
Sbjct: 613 KIGYFPWDEDIATTYLWKNVLERR-GYKPSIKQYDVGSMFTGMSTGQVDVEFDGWLPVAQ 671
Query: 89 KFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPG 148
K ++ ++ V +AV +KS D+ G KI GIEPG
Sbjct: 672 KQYWDRYKK-NLVDVGSWYDKTSLEIAVPSYV--KDVKSLADLKGKASTFGGKIIGIEPG 728
Query: 149 NEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLN 208
+ + + K +++ + S A +++ R P + W PH S
Sbjct: 729 TGEMKLLKGNVLKEYGLDKEYKVSDGSSPAMLAELERSYAKKEPVAVVLWSPHWAYSKYK 788
Query: 209 IHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQ- 267
+ L ++ G ++T+ + K P + LK + + I + +
Sbjct: 789 LTKLADPKKAFG-ASNQLHTLANKSFPKKFPEFNGWLKKWHMTEKELGSLEAAIQDAGKG 847
Query: 268 DRQFVGRTMLRTHPDLLKN 286
+ + + + HP ++
Sbjct: 848 NEEEGAQKWMDAHPGIVDK 866
>gi|108805374|ref|YP_645311.1| twin-arginine translocation pathway signal [Rubrobacter
xylanophilus DSM 9941]
gi|108766617|gb|ABG05499.1| Twin-arginine translocation pathway signal [Rubrobacter
xylanophilus DSM 9941]
Length = 297
Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats.
Identities = 64/283 (22%), Positives = 114/283 (40%), Gaps = 13/283 (4%)
Query: 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGY-KTNIKLLAVPVTFRSLKNKGID 77
+ + W + A +A+ V+ EE LGY K ++L V FRS+ + +D
Sbjct: 24 CSSLAAGRTLTLGYIAWDENVANSALVKVLAEERLGYDKVELRLSGVEEVFRSVASGRVD 83
Query: 78 IFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKE 137
F+ W P+ + + + +Y +AV D + + IA +
Sbjct: 84 AFLDVWLPNHRRLLRTAGRGAILLERPWYEGQTEYGIAVPDYM-----RDVRSIADLDRS 138
Query: 138 LGAKIYGIEPGNEGNQRIL-DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFL 196
I GIEP +RI +I L +L AS A + R R+ P VFL
Sbjct: 139 GARVITGIEPDAVLMRRIRTHVIPAYDLDL---KLAGASTPAMLDALERAYRSREPFVFL 195
Query: 197 SWEPHPINSDLNIHYLPGGEEISGF--GEASVYTVVRSDYLDKCPNISRLLKNIKFSVAL 254
+W PH +N + HYL ++ G +++++++ D D+ P L+ N++ +
Sbjct: 196 AWSPHWMNEVYDFHYLEDPKDAQGDIVDGSTLHSLLSPDLEDRHPAARALIGNMRLTKEQ 255
Query: 255 ENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQ 297
N + IL D + L + + ++ W+ G
Sbjct: 256 INSLELRILEEG-DPRRGVEAWLENNEEAVRPWVEAAKRAGGA 297
>gi|216263962|ref|ZP_03435956.1| glycine betaine, L-proline ABC transporter,
glycine/betaine/L-proline-binding protein [Borrelia
afzelii ACA-1]
gi|215980006|gb|EEC20828.1| glycine betaine, L-proline ABC transporter,
glycine/betaine/L-proline-binding protein [Borrelia
afzelii ACA-1]
Length = 294
Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats.
Identities = 52/287 (18%), Positives = 105/287 (36%), Gaps = 7/287 (2%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+ C+FL S + + + V+ A W A T + V+ E +GY I
Sbjct: 6 KLFIGFCIFLIFLSCDEKKSSKNLKSVKIAYVNWGGETAATNVLKVVFE-KMGYNAEIFS 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V ++ L + +D + W P+ +KF L + + N +G V
Sbjct: 65 VTTSVMYQYLASGKVDGTVSSWVPTADKFYYEKL-KTKFVDLGANYEGTIQGFVVPSYVL 123
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
I S ++ + K+ GI+ G + S + L+ +SE +
Sbjct: 124 ---ISSISELKGKGDKFKNKMIGIDAGAGTQIVTEQALEYYGLSK-EYELVPSSESVMLA 179
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNI 241
+ + N + W+PH S +I +L ++ G SV+T+VR + +
Sbjct: 180 SLDSSIKRNEWILVPLWKPHWAFSRYDIKFLDDP-DLIMGGIESVHTLVRLGLENDDLDA 238
Query: 242 SRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+ + ++ L +M + + +++K W+
Sbjct: 239 YYVFDHFYWNDDLILPLMDRNDKEPGKEYRNAVEFVENNKEIVKMWV 285
>gi|116053243|ref|YP_793566.1| putative binding protein component of ABC transporter [Pseudomonas
aeruginosa UCBPP-PA14]
gi|115588464|gb|ABJ14479.1| putative binding protein component of ABC transporter [Pseudomonas
aeruginosa UCBPP-PA14]
Length = 322
Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats.
Identities = 48/303 (15%), Positives = 99/303 (32%), Gaps = 28/303 (9%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGY 82
+S V+FA W T + +L + G T+ ++L I +F
Sbjct: 30 ESGKAVKFAGLNWESGTLLTELMQFVLAKGYGCTTDSLPGNSITMEQALSTNDIQVFAEE 89
Query: 83 WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV-----------GFALGIKSYQDI 131
W G + V E + GA V A ++S D+
Sbjct: 90 WI-GRSDAWNKAAAAGKVVGVGEPIVGAVEGWYVPRYVIEGDPQRKLEAKAPKLRSIADL 148
Query: 132 AKYKKELGA-------KIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
A+Y + + Y G +M+ + + A + +
Sbjct: 149 AQYAEVFRDPEEPGKGRFYNCPAGWTCELENSEMLKSYGLEETFTNFRPGTGPALDAAVL 208
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
R P +F W P P+ ++ L + + + + D+ P + +
Sbjct: 209 SSYRRGEPILFYYWSPTPLMGRADLVRLEERPGVDK--RIRIQVGLSRTFHDQAPELVAV 266
Query: 245 LKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLE 304
L+ + L N + + ++ D + R L+ HP++ W+ +D ++++E
Sbjct: 267 LEKVNLPAELLNSDLARMAKDRIDAARLAREFLKEHPEVWHAWVD-------EDTAKKIE 319
Query: 305 RFM 307
+
Sbjct: 320 AAL 322
>gi|255263184|ref|ZP_05342526.1| glycine betaine transporter, substrate-binding protein
[Thalassiobium sp. R2A62]
gi|255105519|gb|EET48193.1| glycine betaine transporter, substrate-binding protein
[Thalassiobium sp. R2A62]
Length = 322
Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats.
Identities = 55/329 (16%), Positives = 104/329 (31%), Gaps = 28/329 (8%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M + + LTT S+ C V + W TA+ S ++E+ G +
Sbjct: 1 MKMKMLGAVALTTASLGATSAMADCGEVSITEMDWASSQVVTAVASFLMEQGYGCEVQKV 60
Query: 61 LLAVPVTFRSL-KNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ SL + DI W S + E I+L G +
Sbjct: 61 PSSTVPALTSLAETGEPDILTEVWANSTPAYAGLLEEGKLIELTNVLSDGGVEAWWIPAY 120
Query: 120 GFA--LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR-LIEASE 176
+ +++ I +G K + G + + + G S
Sbjct: 121 LAESNPELTTWEGIMANPAAVGGKFHDCPSGWACDIINNNNLTALGIEGTGLERFQHGSG 180
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE-----------------IS 219
+ I + P + W P + + + GE S
Sbjct: 181 ETLQTSIAAAYADQQPWLGYYWAPTAVLGKYPMVQVQVGEYNADAHTCNGDVDCADPTFS 240
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+ A V T V ++++ P ++ LLKN+ F+ A E++ L+N + L +
Sbjct: 241 AYPAAKVTTAVSGAFMEREPEVAELLKNVSFTNAQMGEVLAWRLDNNASNEEAAVYFLTS 300
Query: 280 HPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
+ D+ +WL + +L +
Sbjct: 301 YKDVWADWLN-------DEAKGKLSALLK 322
>gi|150396970|ref|YP_001327437.1| substrate-binding region of ABC-type glycine betaine transport
system [Sinorhizobium medicae WSM419]
gi|150028485|gb|ABR60602.1| Substrate-binding region of ABC-type glycine betaine transport
system [Sinorhizobium medicae WSM419]
Length = 332
Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats.
Identities = 42/327 (12%), Positives = 96/327 (29%), Gaps = 38/327 (11%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSL 71
++ + AD C V A+ W + +ILE G + TF S+
Sbjct: 13 GICLMAGSSGADECGNVTIAEMDWASAGVAARVDRLILENGYGCSVKLVPGDTMPTFSSM 72
Query: 72 KNK-GIDIFMGYWYPSLEKFIAPYLEEGSIKL-VAENLQGAKYMLAVNDVGFALG----- 124
+K D+ W S+ ++EG + +G +
Sbjct: 73 NDKAEPDLVPELWINSVRTPFDAAVKEGRLVEGARVLSEGGVEGWWIPKFIADAHPKIRT 132
Query: 125 ----IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI-EASELAS 179
+K + ++ ++ + GF+L+ S
Sbjct: 133 VQDALKHPELFPSPDDPAKGAVHNCPSSWNCRFSTANLYKALEGDKAGFQLVDPGSAAGL 192
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE-------------------ISG 220
I + W P + + L G + ++
Sbjct: 193 DGSIAEAFEKKTGWLGYYWAPTAVLGKYEMTLLSFGVDHDKAEWDSCTAVPDCPAPKVNS 252
Query: 221 FGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ + VYTVV + D+ + + ++ A N+++ + N+ + R L
Sbjct: 253 YPVSDVYTVVTGSFADRAGSAMNYVGARQWENATINKVLAWMDQNQATNEDAARYFLGNF 312
Query: 281 PDLLKNWLIGVTTFDGQDPSRQLERFM 307
++ W+ + + +++ +
Sbjct: 313 QEIWTQWVS-------PEVAEKVKAAL 332
>gi|107102766|ref|ZP_01366684.1| hypothetical protein PaerPA_01003833 [Pseudomonas aeruginosa PACS2]
Length = 264
Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats.
Identities = 49/271 (18%), Positives = 103/271 (38%), Gaps = 11/271 (4%)
Query: 20 RDADSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDI 78
A + W+D ATT + + ++ E LGY+ + +A + ++ + +D
Sbjct: 2 AAAADKPVITIGYVDGWSDSVATTHVAAEVIREKLGYEVKLMPVAAGIMWQGVARGKLDA 61
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL 138
+ W P +++ + +A N A+ L V + A I + K
Sbjct: 62 MLSAWLPGTHGAYYEKMKD-KVVNLAINYPDARIGLIVPEYVSANSIAD---LQAQKDAF 117
Query: 139 GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
G ++ GI+ G + + I ++L+ +S +++ R + P V W
Sbjct: 118 GGRVVGIDAGAGVMIKTDEAIKQYGLD---YKLVASSGSGMIAELTRAENEKKPVVVTGW 174
Query: 199 EPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKF-SVALENE 257
PH + + + +L +++ G E V TV K + LK + +
Sbjct: 175 IPHWMFAKWKLKFLDDPKKVYGDTE-HVDTVANPALEAKAKPVWEFLKKFGWRDGNEVGQ 233
Query: 258 MMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+M I + + + +P +K+W+
Sbjct: 234 VMLAI-QEGAKPEDAAKQWVAANPGRVKDWV 263
>gi|225181503|ref|ZP_03734945.1| Substrate-binding region of ABC-type glycine betaine transport
system [Dethiobacter alkaliphilus AHT 1]
gi|225167751|gb|EEG76560.1| Substrate-binding region of ABC-type glycine betaine transport
system [Dethiobacter alkaliphilus AHT 1]
Length = 339
Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats.
Identities = 54/327 (16%), Positives = 107/327 (32%), Gaps = 36/327 (11%)
Query: 9 LFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTF 68
F+ A++A + FA+ W I A+ +ILEE GY+T+ + + ++
Sbjct: 22 FFIAGCVPDSAQEA--KESITFAEGDWDSIRVHNAIARMILEEGYGYQTDARSNSEQLSL 79
Query: 69 RSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA------ 122
L N +D++M W ++ + +G I V+ N + L V
Sbjct: 80 LGLSNGDVDVYMEIWTGNVFDEYNQLVADGDIVQVSVNYDDNRQGLYVPTFVIEGDEERG 139
Query: 123 -----LGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
++S D+ Y +IYG PG + + + S
Sbjct: 140 IEPLAPNLRSIHDLPDYWALFADPDDPAKGRIYGSVPGWFAEDVMQTKMESYGLSDTYNY 199
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI---------SGF 221
+S A + + P V WEP + ++ L + F
Sbjct: 200 FQPSSGTALATALISAIERGEPWVGYYWEPTWVAGKYDLTLLEDKPYNEQAWSDGFRTEF 259
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHP 281
+ V+ D + P+ + S L +E + + N + L
Sbjct: 260 PSQRITIAVQKDLPQEAPDAVEFFSHYSTSSELTSEALAYMEENDATEKEAAIWFLNEFE 319
Query: 282 DLLKNWLIGVTTFDGQDPSRQLERFMN 308
++ W+ + + ++ +N
Sbjct: 320 EIWTGWVP-------AEVADSVKDAIN 339
>gi|188586442|ref|YP_001917987.1| Substrate-binding region of ABC-type glycine betaine transport
system [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179351129|gb|ACB85399.1| Substrate-binding region of ABC-type glycine betaine transport
system [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 291
Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats.
Identities = 67/297 (22%), Positives = 114/297 (38%), Gaps = 17/297 (5%)
Query: 1 MYKILAVCLFLTTFSISYARDA---------DSCTPVRFADTGWTDIAATTAMTSVILEE 51
M K+ V + + T + A +S ++F T WT A T + ILEE
Sbjct: 1 MRKLKLVLVTMITIVLLTACTNGGGGVTAGEESKETIKFGMTDWTSTAVPTEIARQILEE 60
Query: 52 ILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAK 111
GY+T PV F L ++ ID FM W P E+ + E ++ V+ + + A
Sbjct: 61 A-GYETETTNADQPVIFVGLVDEEIDFFMDAWLPYTEEALWDEHGE-DLQKVSASYKEAP 118
Query: 112 YMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
V + + + + +I GI+ G ++ +MI +
Sbjct: 119 LGWVVPEYVEE---DTLDEFLANLDKYNNEIVGIDSGAGISEISKEMIEDLGIGD-ELEF 174
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVR 231
+ +SE A + N P FL W PH + + +I +L G EE +VY +
Sbjct: 175 VPSSEAAMMGEAMSAMDNEEPIAFLGWRPHSMFTQYDIKFLEGQEEYFK--ADNVYVISY 232
Query: 232 SDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
DK P +L + + EMM N + + + ++ + D + L
Sbjct: 233 EGIEDKHPEAYEILSDWSMPIEDLEEMMYEHEENDVEYEVLAEQWIKENRDKVDEML 289
>gi|56696028|ref|YP_166382.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Ruegeria pomeroyi DSS-3]
gi|56677765|gb|AAV94431.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Ruegeria pomeroyi DSS-3]
Length = 336
Score = 163 bits (411), Expect = 4e-38, Method: Composition-based stats.
Identities = 49/316 (15%), Positives = 104/316 (32%), Gaps = 25/316 (7%)
Query: 1 MYKI-LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M ++ L + L ++ A S P++ A WT TT + +L GYK
Sbjct: 21 MKRVGLGLALVALAGGVNAAEMGASDEPIKLAINEWTGQHVTTHVAGEMLRAA-GYKVEY 79
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ F++L + I + W ++ A + EG++ + + A+ +A
Sbjct: 80 VTAGMMNQFQALADGDIHATLEIWSSNVSDEYAKKVAEGTVTEIGDLGLNAREGIAYPAH 139
Query: 120 GFA--LGIKSYQDIAKYKKELGAKIY---GIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
G+ +++ + + + G + L +
Sbjct: 140 VADLCPGLPAWEALKDCAQVFASAETLPMGRLVDYPADWGTPGADRMTGLDLPIKAVPAG 199
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE------------------ 216
SE A +++R P + W+PH S ++ ++
Sbjct: 200 SEGALIAELRASTERKSPLLITFWQPHWAMSAYDVKFIDLPPGEEACFNDASWGPNPNAV 259
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
F + ++ S + +K P +L N + SV + MM I + + V
Sbjct: 260 NDCDFSPSRIFKASWSGFAEKWPAAHEILSNYQLSVEAQQPMMGAIDVDGGKVEEVVAAW 319
Query: 277 LRTHPDLLKNWLIGVT 292
+ + + + T
Sbjct: 320 MTENEGSWRPVVDAAT 335
>gi|224531873|ref|ZP_03672505.1| glycine betaine, L-proline ABC transporter,
glycine/betaine/L-proline-binding protein [Borrelia
valaisiana VS116]
gi|224511338|gb|EEF81744.1| glycine betaine, L-proline ABC transporter,
glycine/betaine/L-proline-binding protein [Borrelia
valaisiana VS116]
Length = 294
Score = 163 bits (411), Expect = 4e-38, Method: Composition-based stats.
Identities = 52/287 (18%), Positives = 105/287 (36%), Gaps = 7/287 (2%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+ C+FL S + + + V+ W A T + V+ E +GY I
Sbjct: 6 KLFIGFCIFLIFLSCDEKKSSKNLKSVKIGYVNWGGETAATNVLKVVFE-KMGYNAEIFS 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V ++ L + +D + W P+ +KF L + + N +G V
Sbjct: 65 VTTSVMYQYLASGKVDGTVSSWVPTADKFYYEKL-KTKFVDLGANYEGTIQGFVVPSYVP 123
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
I S ++ K+ GI+ G +N S + L+ +SE +
Sbjct: 124 ---ISSISELKGKGANFKNKMIGIDAGAGTQIVTEQALNYYGLSK-EYELVPSSESVMLA 179
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNI 241
+ + N + W+PH S +I +L ++ G SV+T+VR + +
Sbjct: 180 SLDSSIKRNEWILVPLWKPHWAFSRYDIKFLDDP-DLIMGGIESVHTLVRLGLENDDIDA 238
Query: 242 SRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+ + ++ L +M + + + +++K W+
Sbjct: 239 YYVFDHFYWNDDLILPLMDRNDKEPGNEYRNAVEFVEKNKEIVKMWV 285
>gi|119952946|ref|YP_945155.1| glycine betaine-binding protein [Borrelia turicatae 91E135]
gi|119861717|gb|AAX17485.1| glycine betaine-binding protein [Borrelia turicatae 91E135]
Length = 298
Score = 163 bits (411), Expect = 4e-38, Method: Composition-based stats.
Identities = 52/296 (17%), Positives = 102/296 (34%), Gaps = 15/296 (5%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCT--------PVRFADTGWTDIAATTAMTSVILEEI 52
M +L + D+ V+ A W T + V+ E
Sbjct: 1 MKGLLISVFISFILILFSCDKNDNSKDNGFKSVRSVKIAYVNWIGETVATNIMKVVFE-K 59
Query: 53 LGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKY 112
+GY I + + ++ L + +D + W P+ +KF + + N +G
Sbjct: 60 IGYNVEILPVTTSIMYQYLASGQVDGMVSAWVPTADKFYYEK-FKDKFVDLGANYEGTLQ 118
Query: 113 MLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
V I S ++ E K+ GI+ G + + + + LI
Sbjct: 119 GFVVPSYV---TISSISELKGRGAEFKNKMIGIDAGAGTQLSVEETLKRYGLDK-EYELI 174
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRS 232
+SE + + + + + W+PH + NI +L +S G S++++VR
Sbjct: 175 SSSESVMLASLESAIKKHEWILVPLWKPHWAFTKYNIKFLDDPL-LSMGGPESIHSLVRI 233
Query: 233 DYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
D P+ L N + L +++ + H + +KNW+
Sbjct: 234 GLEDADPDAYYLFDNFYWGDDLLLPLIEKNYKEPGHEYGNAVEFVDLHKEYVKNWV 289
>gi|121997044|ref|YP_001001831.1| glycine betaine ABC transporter substrate-binding protein
[Halorhodospira halophila SL1]
gi|121588449|gb|ABM61029.1| Substrate-binding region of ABC-type glycine betaine transport
system [Halorhodospira halophila SL1]
Length = 286
Score = 163 bits (411), Expect = 4e-38, Method: Composition-based stats.
Identities = 56/272 (20%), Positives = 96/272 (35%), Gaps = 9/272 (3%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
A + +R T W D T M ++ + + + L ID+
Sbjct: 18 ASAANADEIRIGWTAWADAEFVTRMAEDVITSEFNTDVELVQTDIAPQYTGLAQGDIDLM 77
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAK--YKKE 137
+ W P+ + + I + A V + G+ S +D+ +
Sbjct: 78 LMSWQPTTHEDYVEQFGD-DIVDLGVLYGDAALGWIVPQDLYDEGLTSIEDLKDPEWHDR 136
Query: 138 LGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLS 197
L +I GI+PG + D+I + + LIEAS+ A + + R R V
Sbjct: 137 LDGQIQGIDPGAGLTRLSHDVIEDYDLD---YNLIEASDSAMTAALNRAARRGDAIVVTG 193
Query: 198 WEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENE 257
W PH N+ YL + S G S++ + R + P ++ I+ + L NE
Sbjct: 194 WSPHWKFGAWNLAYLEDPKG-SLGGAESIHAMARQGFEGDHPEVASFASCIEIDIDLLNE 252
Query: 258 MMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
M L + L DL+ W+
Sbjct: 253 YMYLGREEGT--EEAVEQFLDAEADLVDQWVE 282
>gi|330971093|gb|EGH71159.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. aceris str. M302273PT]
Length = 330
Score = 163 bits (411), Expect = 4e-38, Method: Composition-based stats.
Identities = 53/338 (15%), Positives = 107/338 (31%), Gaps = 43/338 (12%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
+ L A A+ P++F W + T + I+E+ GY T+ +
Sbjct: 1 MGCSLLALGLLGQTATAAEKAKPIQFGALTWESGSLITEVLRTIVEKGYGYPTDTLPGST 60
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA-- 122
+L I + W EEG + + ++GA V +
Sbjct: 61 VSLETALAKNDIQVIAEEW-TGRSPVWVKAEEEGKVLGLGNIVKGATEGWWVPEYVIKGD 119
Query: 123 ---------LGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNNKFSL 166
+KS D+A+YK + G + +
Sbjct: 120 AAKGIKPLAPDLKSVADLARYKDVFKDPESPDKGRFLNSPSGWTSEIVNTQKLKAYGLAD 179
Query: 167 KGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG-EEISGFG--- 222
S A +++ R P +F W P P+ + L + +
Sbjct: 180 SFVNFRTGSGAALDAEVASSIRRGKPVLFYYWSPTPLLGKYKLIKLDEPAFDAEAWKTLT 239
Query: 223 -------------EASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDR 269
A++ V +++ + P + + K + F + L N+ + + + +D
Sbjct: 240 DASNPNPRGTSSLAATLSIGVSAEFSKQYPELVSVFKGVDFPIELLNKTLGEMSDKHEDA 299
Query: 270 QFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ V L+ HP++ K WL D + ++ +
Sbjct: 300 KVVAARFLKQHPEVWKAWLP-------ADVATRVSSSL 330
>gi|126728822|ref|ZP_01744637.1| glycine betaine/proline ABC transporter, periplasmic glycine
betaine/proline-binding protein [Sagittula stellata
E-37]
gi|126710752|gb|EBA09803.1| glycine betaine/proline ABC transporter, periplasmic glycine
betaine/proline-binding protein [Sagittula stellata
E-37]
Length = 330
Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats.
Identities = 48/310 (15%), Positives = 90/310 (29%), Gaps = 29/310 (9%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV-PVTFRSLKNKGIDIF 79
DA C V A GW TT + +LE+ G + P +N D+
Sbjct: 28 DAGQCGEVSIAQMGWAAAEVTTNIAKFLLEQGYGCDVTLVQSDTIPAITSVAENGEPDVV 87
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQ-GAKYMLAVNDVGFA--LGIKSYQDIAKYKK 136
W S + E G+I+ + L+ G + +K+ I + +
Sbjct: 88 TNLWLNSGGEAYIKLEEGGTIQRLTSVLEPGGVEGWWIPTSLAEEHPELKTIDGILENPE 147
Query: 137 ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR-LIEASELASFSQIRRDQRNNIPAVF 195
+G++ G ++ G S + + P
Sbjct: 148 LVGSRFNNCPDGWGCRVVSDNLSRALDLEGHGIEVFNHGSGETLATSMGAAVTGGEPWFG 207
Query: 196 LSWEPHPINSDLNIHYLPGGEE-----------------ISGFGEASVYTVVRSDYLDKC 238
W P ++ + G +S F A + T V +++ +
Sbjct: 208 YYWGPTVPLGKYDMTKVDLGGYDEAAFAPLQNPDTPDPQVSDFPAAPILTSVTTEFAQEN 267
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
P ++ N+ F+ + ++ N + V L T D NW+
Sbjct: 268 PEVTEFFTNMTFATDQMSGLLAWKDENNASNEEVAVYFLSTASDTWTNWVNDA------- 320
Query: 299 PSRQLERFMN 308
L +
Sbjct: 321 ARENLSALLK 330
>gi|219684881|ref|ZP_03539823.1| glycine betaine, L-proline ABC transporter,
glycine/betaine/L-proline-binding protein [Borrelia
garinii PBr]
gi|219671826|gb|EED28881.1| glycine betaine, L-proline ABC transporter,
glycine/betaine/L-proline-binding protein [Borrelia
garinii PBr]
Length = 294
Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats.
Identities = 53/287 (18%), Positives = 104/287 (36%), Gaps = 7/287 (2%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+ C+FL S + + + V+ W A T + V+ E +GY I
Sbjct: 6 KLFIGFCIFLIFLSCDEKKSSKNLKSVKIGYVNWGGETAATNVLKVVFE-KMGYNAEIFS 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V ++ L K +D + W P+ +KF L + + N +G V
Sbjct: 65 VTTSVMYQYLATKKVDGTVSSWVPTADKFYYEKL-KTKFVDLGANYEGTIQGFVVPSYVP 123
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
I S ++ + K+ GI+ G ++ S + LI +SE +
Sbjct: 124 ---ISSISELKGKGDKFKNKMIGIDAGAGTQIVTEQALDYYGLSK-EYELIPSSESVMLA 179
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNI 241
+ + N + W+PH S +I L ++ G SV+T+VR + +
Sbjct: 180 SLDSAIKRNEWVLVPLWKPHWAFSRYDIKLLDDP-DLIMGGIESVHTLVRLGLENDDLDA 238
Query: 242 SRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+ + ++ L +M + + +++K W+
Sbjct: 239 YYVFDHFYWNDDLILPLMDRNDKEPGKEYRNAVEFVEKNKEIVKMWV 285
>gi|163737850|ref|ZP_02145267.1| glycine betaine transporter, substrate-binding protein [Phaeobacter
gallaeciensis BS107]
gi|161389376|gb|EDQ13728.1| glycine betaine transporter, substrate-binding protein [Phaeobacter
gallaeciensis BS107]
Length = 320
Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats.
Identities = 46/329 (13%), Positives = 91/329 (27%), Gaps = 30/329 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M +++ + ++ A+ C V W T++ ++E+ G
Sbjct: 1 MKQLVLASVCA--LGMAAPAWAEDCGDVTITQMDWASANVVTSVAKFLMEQGYGCSVTTV 58
Query: 61 LLAVPVTFRSL-KNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ P S+ + DI W + + E ++L G V
Sbjct: 59 PSSTPTALTSVAETGTPDILTELWVNTAPAYADLVAEGKLVELADVLSDGGIEGWWVPQY 118
Query: 120 G--FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKF-SLKGFRLIEASE 176
+ + I K +G + G +M S
Sbjct: 119 VVDAHPEAATLEGILANPKLVGGRFDNCPDGWGCRTVNDNMNQVIDMEGKGIEVFDHGSG 178
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPIN-----------------SDLNIHYLPGGEEIS 219
+ I + P W P + N +S
Sbjct: 179 ETLATAIAAAYADEKPWFGFYWAPTAVLGKFPMVLVDLGKYDADTHTCNSSKECASPGVS 238
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+ A+V T +D+ + P I+ L+ NI F+ N ++ + +N + L
Sbjct: 239 PYPSAAVKTAATADFQQREPEIAELMSNISFTNDQMNGVLAWMEDNNASAEEGAVYFLTN 298
Query: 280 HPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
+ D WL + +L +
Sbjct: 299 NKDQWGGWLN-------DEAHEKLSAILK 320
>gi|237798883|ref|ZP_04587344.1| histidine transporter, periplasmic histidine-binding protein
[Pseudomonas syringae pv. oryzae str. 1_6]
gi|331021737|gb|EGI01794.1| histidine transporter, periplasmic histidine-binding protein
[Pseudomonas syringae pv. oryzae str. 1_6]
Length = 337
Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats.
Identities = 54/322 (16%), Positives = 103/322 (31%), Gaps = 43/322 (13%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFM 80
A+ P++F W + T + ++E+ GY T+ + +L I +
Sbjct: 24 AAEKNAPIQFGALTWESGSLITEVLRTLVEKGYGYPTDTLPGSTVSLETALAKNDIQVIA 83
Query: 81 GYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG-----------FALGIKSYQ 129
W +G + + ++GA V + A +KS
Sbjct: 84 EEW-TGRSPVWVKAEADGKVFGLGNIVKGATEGWWVPEYVIKGDAAKGIKPMAPDLKSVA 142
Query: 130 DIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
D+A+YK + G + S S A ++
Sbjct: 143 DLARYKDVFEDPESPDKGRFLNSPSGWTSEIVNTQKLKAYGLSDSFVNFRTGSGAALDAE 202
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE-EISGFG----------------EAS 225
I R P +F W P P+ + L + + +A+
Sbjct: 203 IGSAIRRGKPVLFYYWSPTPLLGSYKLIKLEEPPFDADAWKTLTDASNPDPRGSSSLDAT 262
Query: 226 VYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLK 285
+ V + + + P + K + F + L N+ + + QD Q V + L+ HPD+ K
Sbjct: 263 LSIGVSAAFSKQYPELVSFFKQVDFPIDLLNQTLAEMSEKHQDPQVVAKAFLKQHPDVWK 322
Query: 286 NWLIGVTTFDGQDPSRQLERFM 307
WL D + ++ +
Sbjct: 323 AWLP-------ADVAARVSSAL 337
>gi|297583677|ref|YP_003699457.1| glycine betaine ABC transporter substrate-binding protein [Bacillus
selenitireducens MLS10]
gi|297142134|gb|ADH98891.1| Substrate-binding region of ABC-type glycine betaine transport
system [Bacillus selenitireducens MLS10]
Length = 283
Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats.
Identities = 59/288 (20%), Positives = 106/288 (36%), Gaps = 11/288 (3%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+ K AV + DS + W + A T M ++LEE GY I
Sbjct: 6 IMKGAAVGSVFFLAACGNNESNDSMGEIEIGYNNWAENIAVTNMWKILLEEQ-GYDVTIT 64
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
L + ++ N IDI M W P ++ E I + + A AV D
Sbjct: 65 PLEKAPIWSAVANDNIDIGMEIWLPITDEPFYEEYNE-DIHIGEMWFEAANLGFAVPDYM 123
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
I S ++ E+ +I GIE G ++ + + + +SE A
Sbjct: 124 P---ITSIDELDTVYDEINGEITGIEAGASISELADQTLEHYGLEVSQTN---SSEAAMM 177
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ + + P V W PH ++ NI YL + G + ++ + R+ + + P+
Sbjct: 178 TALDTAYQAEEPIVVAMWNPHWAFAEYNIRYLEDPKGTFGEPD-DIFFMTRTGFPEDHPD 236
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
I L + + E+M +I + + + + D + W+
Sbjct: 237 ILEWLNTWEMNDENLGELMAMINEQGE--EEGASRWIEENRDTIDTWI 282
>gi|8650111|gb|AAF78097.1|AF111939_1 periplasmic binding protein [Sinorhizobium meliloti]
Length = 346
Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats.
Identities = 55/347 (15%), Positives = 90/347 (25%), Gaps = 47/347 (13%)
Query: 1 MYKILAVCLFLTTFSISYARDA--DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M A + S S A + V FA W A T + IL + + +
Sbjct: 8 MRLTFAAAGLMLAASASGANASYCGDGKTVTFAGIDWESGAFITEVMKTILSKGYDCQVD 67
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
++ N + IF W +EE + V + GA V D
Sbjct: 68 SIPGNSVTLEQATANNDVQIFAEEWL-GRSDVWNKAVEEKKVIAVGKTFVGASEGWFVPD 126
Query: 119 V-----------GFALGIKSYQD---------IAKYKKELGAKIYGIEPGNEGNQRILDM 158
A +KS A ++ + G
Sbjct: 127 YVVHGDPARNIEAKAPDLKSVSQLTDPKIAEIFADPEEPSKGRFLNCPSGWTCEGVSTAK 186
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ K + A + I P F W P I + L
Sbjct: 187 LEAYKLGETYVNFRPGTGTALDAAITSAYLQGEPIFFYYWSPTAILGKFKLIQLEEPAYN 246
Query: 219 -----------------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKL 261
F V V S + + P I +L+ F + N +
Sbjct: 247 EACWKELSSANGKRDEGCAFPSVDVAYGVNSTFASEAPEIVEILEKATFPLDEVNASLAY 306
Query: 262 ILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
+ +NK D L+T D+ W+ + ++E +
Sbjct: 307 MADNKVDATAAAAEFLKTKGDIWSKWVS-------DEARGKIEAGLK 346
>gi|257054194|ref|YP_003132026.1| ABC-type proline/glycine betaine transport system, periplasmic
component [Saccharomonospora viridis DSM 43017]
gi|256584066|gb|ACU95199.1| ABC-type proline/glycine betaine transport system, periplasmic
component [Saccharomonospora viridis DSM 43017]
Length = 299
Score = 162 bits (410), Expect = 6e-38, Method: Composition-based stats.
Identities = 55/296 (18%), Positives = 101/296 (34%), Gaps = 16/296 (5%)
Query: 2 YKILAVCLFLTTFSISYARDA----------DSCTPVRFADTGWTDIAATTAMTSVILEE 51
+ + + + A A + W + A + V LE+
Sbjct: 4 KRFRGLSFIAGLMTAAMALTACGGDSGGGDDGGDKDLTIGYISWDENIALANLFKVQLEQ 63
Query: 52 ILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAK 111
GY +K L TF++L ID+F W P + ++ ++ + GA
Sbjct: 64 R-GYSVELKQLDAGPTFQALSQGDIDLFQDAWLPITHEDYWEQHKD-KVEDLGTWYTGAT 121
Query: 112 YMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
+AV + S D+A++ I GIEPG + D + L
Sbjct: 122 LNIAVPAYVDE--VDSIADLAEHADMFDGTITGIEPGAGLTRITQDEVIPGYGLDGKLSL 179
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVR 231
+S A +++ + P V W PH S ++ L E + G GE ++ V R
Sbjct: 180 QTSSTTAMLTELDSAIKAEEPIVVTLWHPHWAYSRYDLKDLEDPEGLMGEGE-EIHNVGR 238
Query: 232 SDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQ-FVGRTMLRTHPDLLKN 286
+ + P ++ +LK+ S + + I + + + L
Sbjct: 239 KGFSEDFPELAEMLKSFTMSDEMLASLEDAIQQAGTGNELQAVEEWSEENKEALDE 294
>gi|15966453|ref|NP_386806.1| histidine-binding periplasmic signal peptide protein [Sinorhizobium
meliloti 1021]
gi|307300510|ref|ZP_07580290.1| Substrate-binding region of ABC-type glycine betaine transport
system [Sinorhizobium meliloti BL225C]
gi|307318375|ref|ZP_07597810.1| Substrate-binding region of ABC-type glycine betaine transport
system [Sinorhizobium meliloti AK83]
gi|15075724|emb|CAC47279.1| Histidine ABC transporter, periplasmic solute-binding protein
[Sinorhizobium meliloti 1021]
gi|306896057|gb|EFN26808.1| Substrate-binding region of ABC-type glycine betaine transport
system [Sinorhizobium meliloti AK83]
gi|306904676|gb|EFN35260.1| Substrate-binding region of ABC-type glycine betaine transport
system [Sinorhizobium meliloti BL225C]
Length = 344
Score = 162 bits (410), Expect = 6e-38, Method: Composition-based stats.
Identities = 55/347 (15%), Positives = 91/347 (26%), Gaps = 47/347 (13%)
Query: 1 MYKILAVCLFLTTFSISYARDA--DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M A + S S A + V FA W A T + IL + + +
Sbjct: 6 MRLTFAAAGLMLAASASGANASYCGDGKTVTFAGIDWESGAFITEVMKTILSKGYDCQVD 65
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
++ N + IF W +EE + V + GA V D
Sbjct: 66 SIPGNSVTLEQATANNDVQIFAEEWL-GRSDVWNKAVEEKKVIAVGKTFVGASEGWFVPD 124
Query: 119 V-----------GFALGIKSYQD---------IAKYKKELGAKIYGIEPGNEGNQRILDM 158
A +KS A ++ + G
Sbjct: 125 YVVHGDPARNIEAKAPDLKSVSQLTDPKIAEIFADPEEPSKGRFLNCPSGWTCEGVSTAK 184
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ K + A + I P +F W P I + L
Sbjct: 185 LEAYKLGETYVNFRPGTGTALDAAITSAYLQGEPILFYYWSPTAILGKFKLIQLEEPAYN 244
Query: 219 -----------------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKL 261
F V V S + + P I +L+ F + N +
Sbjct: 245 EACWKELSSANGKRDEGCAFPSVDVAYGVNSTFASEAPEIVEILEKATFPLDEVNASLAY 304
Query: 262 ILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
+ +NK D L+T D+ W+ + ++E +
Sbjct: 305 MADNKVDATAAAAEFLKTKGDIWSKWVS-------DEARGKIEAGLK 344
>gi|104781700|ref|YP_608198.1| glycine betaine ABC transporter periplasmic binding protein
[Pseudomonas entomophila L48]
gi|95110687|emb|CAK15400.1| putative glycine betaine ABC transporter, periplasmic binding
protein [Pseudomonas entomophila L48]
Length = 322
Score = 162 bits (409), Expect = 6e-38, Method: Composition-based stats.
Identities = 41/303 (13%), Positives = 96/303 (31%), Gaps = 28/303 (9%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGY 82
+S PV+FA W T + +L+ G T+ +L + I +F
Sbjct: 30 ESGKPVKFAGLNWESGMLLTEVMQFVLKNGYGCDTDSLPGNSISMENALGSNDIQVFAEE 89
Query: 83 WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSY-------------- 128
W + G + V + GA V K
Sbjct: 90 WV-GRSEVWNKAEAAGKVVGVGSPVVGAVEGWYVPRYVIEGDAKRKLEAKAPNLKSIADL 148
Query: 129 ----QDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
Q ++ + Y G +M+ + A + +
Sbjct: 149 GQYAQVFKDPEEPDKGRFYNCPAGWTCELDNSEMLKRYGLENTYTNFRPGTGPALDAAVL 208
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
+ P +F W P P+ ++ L + ++ V + ++ P + +
Sbjct: 209 SSYKRGEPILFYYWSPTPLMGQADLVKLDEKPGVDKSV--TIKVGVSKTFHEQAPELVAV 266
Query: 245 LKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLE 304
L+ + + L N+ + + ++ + + + L+ HP++ W+ +D +++++
Sbjct: 267 LEKVNLPIDLLNQNLARMSRDRIESAELAKLFLKEHPEVWHRWVS-------EDAAKKVD 319
Query: 305 RFM 307
+
Sbjct: 320 AAL 322
>gi|330961929|gb|EGH62189.1| histidine transporter, periplasmic histidine-binding protein
[Pseudomonas syringae pv. maculicola str. ES4326]
Length = 322
Score = 162 bits (409), Expect = 7e-38, Method: Composition-based stats.
Identities = 53/330 (16%), Positives = 105/330 (31%), Gaps = 33/330 (10%)
Query: 1 MYKILAVCLFLTTFSISYARD-----ADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M K L S +S PV+FA W T M VIL++ G
Sbjct: 3 MKKALLTTWVSAGLLASAGASQAAGWCESGKPVKFAGLNWESAMLLTDMLQVILDKGYGC 62
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
+ +L I IF W + G + V + GA
Sbjct: 63 AVDALPGNSIAMENALSTNDIQIFAEEWV-GRSEVWNKAAAAGKVVGVGAPIVGAVEGWY 121
Query: 116 VNDV-----------GFALGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILD 157
V A +KS D+A+Y + Y G +
Sbjct: 122 VPRYVIEGDAKRKLEAKAPNLKSISDLAQYSAVFKDQEEPGKGRFYNCPAGWTCELENSE 181
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
M+ + K + A + I + P + W P P+ +++ L +
Sbjct: 182 MLKSYGLESKYTNFRPGTGPALDAAILSSYKRGEPILTYYWSPTPLMGQVDLVRLEE--K 239
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTML 277
+ V + ++ P + +L+ + + L N+ + + + + + + L
Sbjct: 240 AGVNKTIDIKVGVSKVFHEQAPELVAVLEKVNLPIDLLNQNLGRMAKERIESPKLAKIFL 299
Query: 278 RTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ HP++ W+ +D +++++ +
Sbjct: 300 KEHPEVWHKWVS-------EDAAKKVDASL 322
>gi|330977864|gb|EGH77767.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. aptata str. DSM 50252]
Length = 326
Score = 162 bits (409), Expect = 7e-38, Method: Composition-based stats.
Identities = 54/334 (16%), Positives = 106/334 (31%), Gaps = 43/334 (12%)
Query: 9 LFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTF 68
L A A+ P++F W + T + I+E+ GY T+ +
Sbjct: 1 LLALGLLGQTATAAEKTKPIQFGALTWESGSLITEVLRTIVEKGYGYPTDTLPGSTVSLE 60
Query: 69 RSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA------ 122
+L I + W EEG + + ++GA V +
Sbjct: 61 TALAKNDIQVIAEEW-TGRSPVWVKAEEEGKVLGLGNIVKGATEGWWVPEYVIKGDAAKG 119
Query: 123 -----LGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
+KS D+A+YK + G + +
Sbjct: 120 IKPLAPDLKSVADLARYKDVFKDPESPDKGRFLNSPSGWTSEIVNTQKLKAYGLADSFVN 179
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG-EEISGFG------- 222
S A +++ R P +F W P P+ + L + +
Sbjct: 180 FRTGSGAALDAEVASSIRRGKPVLFYYWSPTPLLGKYKLIKLDEPAFDAEAWKTLTDASN 239
Query: 223 ---------EASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVG 273
A++ V +++ + P + + K + F + L N+ + + + +D + V
Sbjct: 240 PNPRGTSSLAATLSIGVSAEFSKQYPELVTVFKGVDFPIDLLNKTLGEMSDKHEDAKVVA 299
Query: 274 RTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
L+ HPD+ K WL D + ++ +
Sbjct: 300 ARFLKQHPDVWKAWLP-------ADVAERVSSSL 326
>gi|294679155|ref|YP_003579765.1| glycine betaine/L-proline ABC transporter substrate-binding protein
ProX-2 [Rhodobacter capsulatus SB 1003]
gi|294477971|gb|ADE87358.1| glycine betaine/L-proline ABC transporter, substrate-binding
protein ProX-2 [Rhodobacter capsulatus SB 1003]
Length = 333
Score = 162 bits (409), Expect = 7e-38, Method: Composition-based stats.
Identities = 52/340 (15%), Positives = 109/340 (32%), Gaps = 40/340 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDA--DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K A +F+ A + C V A+ W + +ILE G +
Sbjct: 1 MKKPFASVWLTASFAALAAPVMAAEDCGRVSIAEMNWASAGVAAHVDKIILESGYGCEVE 60
Query: 59 IKLLAVPVTFR-SLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAV 116
+ +F + D+ W +++ + + EG + L A L +G + V
Sbjct: 61 LVTGDTMPSFTSMNEKGEPDMAPELWVNAVKVALDTAVAEGRLILAAPLLAEGGEEGWWV 120
Query: 117 NDVGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
+ + ++ G ++ + K
Sbjct: 121 PKYIVDAHPEITTVSAALARPDLFPAPEDPGRGAVHNCPSGWNCQITTENLYRALEAETK 180
Query: 168 GFRLIE-ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG----------- 215
GF L++ S I + + W P I + L G
Sbjct: 181 GFDLVDTGSAAGLDGSIANAHERKLGWLGYYWAPTAILGKYEMVKLDFGVPLDKAHFDAC 240
Query: 216 --------EEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQ 267
+++ + + V TVV + +K ++ K+S A N+++ + N+
Sbjct: 241 TSQPDCPDPKVTAYPVSEVVTVVTRAFAEKAGVAMDYVQTRKWSNATVNQVLAWMEANQG 300
Query: 268 DRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ R L T P+L ++W+ D +++++ +
Sbjct: 301 TNEDGARHFLETCPELWRDWVP-------ADVAQKVKAAL 333
>gi|313108561|ref|ZP_07794562.1| putative glycine betaine-binding protein precursor [Pseudomonas
aeruginosa 39016]
gi|310881064|gb|EFQ39658.1| putative glycine betaine-binding protein precursor [Pseudomonas
aeruginosa 39016]
Length = 270
Score = 162 bits (409), Expect = 7e-38, Method: Composition-based stats.
Identities = 49/267 (18%), Positives = 103/267 (38%), Gaps = 11/267 (4%)
Query: 24 SCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGY 82
+ W+D ATT + + ++ E LGY+ + +A + ++ + +D +
Sbjct: 12 DKPVITIGYVDGWSDSVATTHVAAEVIREKLGYEVKLMPVAAGIMWQGVARGKLDAMLSA 71
Query: 83 WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKI 142
W P +++ + +A N A+ L V + A GI + K G ++
Sbjct: 72 WLPGTHGAYYEKMKD-KVVNLAINYPDARIGLIVPEYVSANGIAD---LQAQKDAFGGRV 127
Query: 143 YGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP 202
GI+ G + + I ++L+ +S +++ R + P V W PH
Sbjct: 128 VGIDAGAGVMIKTDEAIKQYGLD---YKLVASSGSGMIAELTRAENEKKPVVVTGWIPHW 184
Query: 203 INSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKF-SVALENEMMKL 261
+ + + +L +++ G E V TV K + LK + ++M
Sbjct: 185 MFAKWKLKFLDDPKKVYGDTE-HVDTVANPALEAKAKPVWEFLKKFGWKDGNEVGQVMLA 243
Query: 262 ILNNKQDRQFVGRTMLRTHPDLLKNWL 288
I + + + +P +K+W+
Sbjct: 244 I-QEGAKPEDAAKQWVAANPGRVKDWV 269
>gi|297582502|ref|YP_003698282.1| glycine betaine ABC transporter substrate-binding protein [Bacillus
selenitireducens MLS10]
gi|297140959|gb|ADH97716.1| Substrate-binding region of ABC-type glycine betaine transport
system [Bacillus selenitireducens MLS10]
Length = 313
Score = 161 bits (408), Expect = 9e-38, Method: Composition-based stats.
Identities = 57/266 (21%), Positives = 105/266 (39%), Gaps = 8/266 (3%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGY 82
+ + + W + A T M +LEE GY+ ++ LL + + +L N +D+ +
Sbjct: 55 GNGEEITISQISWAENIAVTNMWKYVLEEK-GYEIDLVLLDMGSSMAALDNGELDVNLEV 113
Query: 83 WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKI 142
W P + + A AK L V + + S +D+ ++ +I
Sbjct: 114 WLPVQDANYVEQYGDTVNFSEATWFDNAKVGLVVPEYLED--VNSIEDLNEHADLFNGEI 171
Query: 143 YGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP 202
GIE G + D+I L L+ +SE A S+I V W PH
Sbjct: 172 VGIEAGAGTMEVTEDLIEIYDLDL---ELVPSSEPAMLSEIGNRIEAGEAIVAPLWTPHW 228
Query: 203 INSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI 262
+ S+ ++ +L E + G E ++ R+D+ D P I N K + E++ +
Sbjct: 229 VFSEYDLKFLEDPELVYGDVE-KIHHATRADFADDFPEIQEWFNNWKMTDEEIGELIDYV 287
Query: 263 LNNKQDRQFVGRTMLRTHPDLLKNWL 288
+ + + + DL+ W+
Sbjct: 288 -ESADEPFDGAVEWVDENRDLIDEWV 312
>gi|152988307|ref|YP_001347270.1| putative glycine betaine-binding protein precursor [Pseudomonas
aeruginosa PA7]
gi|150963465|gb|ABR85490.1| probable glycine betaine-binding protein precursor [Pseudomonas
aeruginosa PA7]
Length = 270
Score = 161 bits (408), Expect = 9e-38, Method: Composition-based stats.
Identities = 48/263 (18%), Positives = 99/263 (37%), Gaps = 11/263 (4%)
Query: 28 VRFADTG-WTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPS 86
+ W+D ATT + + ++ E LGY+ + +A + ++ + +D + W P
Sbjct: 16 ITIGYVDGWSDSVATTHVAAEVIREKLGYEVKLMPVAAGIMWQGVARGKLDAMLSAWLPG 75
Query: 87 LEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE 146
+++ + +A N A+ L V + S D+ K G ++ GI+
Sbjct: 76 THGAYYEKMKD-KVVNLAINYPDARIGLIVPEYV---NAGSIADLQAQKDAFGGRVVGID 131
Query: 147 PGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSD 206
G + + I ++L+ +S +++ R + P V W PH + +
Sbjct: 132 AGAGVMIKTDEAIKQYGLD---YKLVASSGSGMIAELTRAENEKKPVVVTGWIPHWMFAK 188
Query: 207 LNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKF-SVALENEMMKLILNN 265
+ +L +++ G E V TV K + LK + +M I
Sbjct: 189 WKLKFLDDPKKVYGDTE-HVDTVANPALEAKARPVWEFLKKFGWKDGNEVGRVMLAI-QE 246
Query: 266 KQDRQFVGRTMLRTHPDLLKNWL 288
+ + + +P + WL
Sbjct: 247 GAKPEDAAKQWVAANPQRVGEWL 269
>gi|258404489|ref|YP_003197231.1| Substrate-binding region of ABC-type glycine betaine transport
system [Desulfohalobium retbaense DSM 5692]
gi|257796716|gb|ACV67653.1| Substrate-binding region of ABC-type glycine betaine transport
system [Desulfohalobium retbaense DSM 5692]
Length = 282
Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats.
Identities = 50/287 (17%), Positives = 109/287 (37%), Gaps = 10/287 (3%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+ K++ + + + + +R W + A + M ++LEE GY +
Sbjct: 4 LQKMVTLLIVGIVLGLCAHPASAKEQTLRIGMNNWAENVAVSNMWKLLLEER-GYDVELM 62
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ V + + + +DI M W P+ +K + + + + + L V
Sbjct: 63 DVGNAVMYGGVASGDLDIGMEVWLPTADKPMVERFGD-QFDIQEPWYKNTRLGLVVPAYV 121
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
I S +D+ + + +I+GI+ G+ N D I E+SE A
Sbjct: 122 ---DIDSIEDLKTQAEAINNEIFGIDSGSSLNALTRDAIKEYDLD---VEFTESSEPAML 175
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
++ + + P V W PH ++ ++ YL + G G+ ++ + R + +
Sbjct: 176 GRLDQSYQAQEPVVVTLWNPHWSFAEYDLKYLEDPANVYGEGD-DIFFITREGFAEDFGP 234
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
+ + + A + +MK I + D + + L+ +W
Sbjct: 235 VLEWMNTWFMTDAQLSSLMKTIKDTG-DPVKGASMWIEDNQKLVDSW 280
>gi|307544047|ref|YP_003896526.1| ABC transporter periplasmic protein [Halomonas elongata DSM 2581]
gi|307216071|emb|CBV41341.1| ABC-type transport system periplasmic substrate-binding protein
[Halomonas elongata DSM 2581]
Length = 289
Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats.
Identities = 49/274 (17%), Positives = 95/274 (34%), Gaps = 7/274 (2%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGY 82
+ W + A M ++LEE GY + ++ + ++ IDI M
Sbjct: 22 AQDKNLVIGTNNWAENIAVANMWKILLEEEYGYDVELSNVSKNALYAAMSQGDIDISMEI 81
Query: 83 WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKK-ELGAK 141
W P +K + +++ +G L V I ++ A + +
Sbjct: 82 WLPITDKPFLE-PYKDELQVHDAWYEGTGLGLVVPGYVDIDSIPELKEHADEYEYQGSPS 140
Query: 142 IYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPH 201
I GI+ G+ + I + + +S A + + + P V W PH
Sbjct: 141 ILGIDSGSAIAGLTDEAIEQYEL---PMSQVNSSGPAMMAALDGAYASQEPIVVTLWSPH 197
Query: 202 PINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKL 261
++ ++ YL + + G E ++Y R D+ P ++ +L K +M
Sbjct: 198 WAFAEYDLKYLEDPKGVYGENE-TIYWFSRGDFASDDPWLTEVLNAWKMDDDTLGGLMAT 256
Query: 262 ILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFD 295
I D + + H D + WL +
Sbjct: 257 IEEVG-DPVEGAQQWIDNHRDTIDQWLAASEAAN 289
>gi|282856694|ref|ZP_06265960.1| substrate-binding region of ABC-type glycine betaine transport
system [Pyramidobacter piscolens W5455]
gi|282585459|gb|EFB90761.1| substrate-binding region of ABC-type glycine betaine transport
system [Pyramidobacter piscolens W5455]
Length = 325
Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats.
Identities = 59/334 (17%), Positives = 106/334 (31%), Gaps = 36/334 (10%)
Query: 1 MYKILAVC--------LFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEI 52
M K + T + FAD GW I A+ +I E++
Sbjct: 1 MKKTTRSLLLLAMLLPCVSAGCAAGGTATGKEKTALTFADVGWDSIKLNNALAGLIAEKV 60
Query: 53 LGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKY 112
GY + P++ +L IDI M W ++ AP L+ G + N +
Sbjct: 61 FGYTWQETPGSTPISHEALLKGEIDIHMEEWTTNIRS-YAPDLQAGRFTELGVNFDDNRQ 119
Query: 113 MLAVNDVGFA--LGIKSYQDIAKYKKELGAK-------IYGIEPGNEGNQRILDMINNNK 163
+ +KS +D+A+Y + IYG G E + + I
Sbjct: 120 GFYIPKYVADRCPDLKSVKDLARYAELFPDPEDASKGIIYGGIVGWEITEIMNKKIAAYG 179
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPG-GEEISGF- 221
S+ + + P V WEP + + L + +
Sbjct: 180 LDKSYNYFASGSDAVLIAAMVSAWDKKAPIVAYYWEPTWLLGKYDFVLLEDEPYDAERYH 239
Query: 222 ------GEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRT 275
+V V +D+ P L + S A+ +E + + +
Sbjct: 240 EGYGACPSVTVTVAVSNDFAASNPEFCAFLAKFEMSSAMISEALAYMNTTNAGYEEAA-E 298
Query: 276 ML--RTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
L ++HP+LL WL + + ++ +
Sbjct: 299 WLLTKSHPELLDRWLS-------PEQAAKVRAAL 325
>gi|294628454|ref|ZP_06707014.1| glycine betaine/proline ABC transporter, permease/substrate-binding
protein [Streptomyces sp. e14]
gi|292831787|gb|EFF90136.1| glycine betaine/proline ABC transporter, permease/substrate-binding
protein [Streptomyces sp. e14]
Length = 871
Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats.
Identities = 59/310 (19%), Positives = 107/310 (34%), Gaps = 17/310 (5%)
Query: 4 ILAVCLFLTTFSISYAR----------DADSCTPVRFADTGWTDIAATTAMTSVILEEIL 53
++ + L + + D + W + A+T + ILE+
Sbjct: 306 VVVLALVAGGMGVFGSGSGSATAGGGTDVGKGKKITLGYIPWDEGVASTFLWKEILEQR- 364
Query: 54 GYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
GY+ + + SL +D W P+ + ++ +
Sbjct: 365 GYQVEARQFDAGPLYTSLAQGSVDFETDSWLPTTHAQYWKKYGK-QLEDLGSWYGPTSLE 423
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
L+V + S D+ E G KI GIE + + K +++++
Sbjct: 424 LSVPAY--MKDVDSLDDLKGKAAEFGGKITGIESSAGEMGLLKSKVLKEYGLDKEYKVVD 481
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+S A ++++R P V W PH SD + L + G G+ V+T+ R
Sbjct: 482 SSTPAMLAELKRAYSKKEPVVVTLWSPHWAYSDYQLKKLKDPKGAWGEGDG-VHTLARKG 540
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQD-RQFVGRTMLRTHPDLLKNWLIGVT 292
+ P + LKN K + I + +Q RT L++ P L+ L V
Sbjct: 541 FTADNPVVGSWLKNFKLGEKQLTGLESAINKAGKGRQQDAVRTWLKSDPGLVDK-LAPVP 599
Query: 293 TFDGQDPSRQ 302
G P+
Sbjct: 600 GGSGAKPAEA 609
Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats.
Identities = 62/270 (22%), Positives = 111/270 (41%), Gaps = 6/270 (2%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNK 74
S A+ A++ + A W + A T + +LE GYK N+K + V + L
Sbjct: 600 GGSGAKPAEAGRALNVAWFPWDEDIAVTHLWKTVLERR-GYKLNLKQMDVGPVYTGLAGG 658
Query: 75 GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKY 134
ID+ W P +K + +K + Q +AV +KS D+
Sbjct: 659 DIDLNFDAWLPYAQKNYWDK-SKDRLKDLGTWYQPTSLEIAVPSYV--KDVKSLADLKGK 715
Query: 135 KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAV 194
G KI GIEPG + + K +++++ S A ++++R P
Sbjct: 716 SSLFGGKIIGIEPGTGEMDLLKKKVLPGYGLDKEYKVVDGSTPAMLAELKRAYAKKQPVA 775
Query: 195 FLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVAL 254
+ W PH S ++ L G+++ G G +V T+ + ++ P +++ +KN + S A
Sbjct: 776 VVLWSPHWAYSRYDLTKLADGKKLFGVG-NTVRTISSLKFPEQYPQLTKWIKNFRMSEAE 834
Query: 255 ENEMMKLILNNKQDRQF-VGRTMLRTHPDL 283
+ I + Q + L HPD+
Sbjct: 835 LGSLESEINQHGQGHEDQAVDAWLGQHPDV 864
>gi|203284069|ref|YP_002221809.1| glycine betaine/L-proline transport system substrate-binding
protein [Borrelia duttonii Ly]
gi|201083512|gb|ACH93103.1| glycine betaine/L-proline transport system substrate-binding
protein [Borrelia duttonii Ly]
Length = 298
Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats.
Identities = 53/296 (17%), Positives = 101/296 (34%), Gaps = 15/296 (5%)
Query: 1 MYKILAVCLFLTTFSISYARDADSC--------TPVRFADTGWTDIAATTAMTSVILEEI 52
M I + DS V+ A W T + V+ E
Sbjct: 1 MKGIFIPVVVSFVLIFVACSKDDSSDNGNPKSLKSVKIAYVNWIGETIATNIVRVVFE-R 59
Query: 53 LGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKY 112
+GY I + + ++ L + +D + W P+ +KF + + N +G
Sbjct: 60 IGYNVEILPVTTSIMYQYLASGRVDGMVSAWVPTADKFYYEK-FKDKFVDLGANYEGTLQ 118
Query: 113 MLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
V I S ++ E K+ GI+ G + + +N S + LI
Sbjct: 119 GFVVPSYV---TISSISELKGRGSEFKNKMIGIDAGAGTQLSVEETLNRYGLSE-EYELI 174
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRS 232
+SE + + + W+PH +I +L +S G S++++V+
Sbjct: 175 SSSESVMLASLESAINKQEWILVPLWQPHWAFVKYDIKFLDDPL-LSMGGPESIHSLVKL 233
Query: 233 DYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+ P+ L N + L +++ + +H D +KNW+
Sbjct: 234 GLQESDPDAYYLFDNFYWGDDLLLPLIEKNYKEPGQEYKNAVEFVDSHKDYIKNWV 289
>gi|150397781|ref|YP_001328248.1| substrate-binding region of ABC-type glycine betaine transport
system [Sinorhizobium medicae WSM419]
gi|150029296|gb|ABR61413.1| Substrate-binding region of ABC-type glycine betaine transport
system [Sinorhizobium medicae WSM419]
Length = 344
Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats.
Identities = 51/346 (14%), Positives = 88/346 (25%), Gaps = 47/346 (13%)
Query: 1 MYKILAVCLFLTTFSISYARDA--DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M +A + S A + V FA W A T + IL + + +
Sbjct: 6 MKLTVAAAGLMLAASAGGANASYCGDGKTVTFAGIDWESGAFITEVMKTILSKGYDCQVD 65
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
++ N + IF W +EE + V + GA V D
Sbjct: 66 SIPGNSVTLEQATANNDVQIFAEEWL-GRSDIWNKAVEEKKVVAVGKTFVGASEGWFVPD 124
Query: 119 VGFA--------------------LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
K + A ++ + G
Sbjct: 125 YVVKGDPARNIEPKAPDLKSVSQLADPKIAEIFADPEEPSKGRFLNCPSGWTCEGVSTAK 184
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ K + A + I P +F W P I + L
Sbjct: 185 LEAYKLGESYVNFRPGTGTALDAAITSAYLQGEPILFYYWSPTAIMGKYKLIQLEEPPYN 244
Query: 219 -----------------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKL 261
F V V S + + P I +L+ F + N +
Sbjct: 245 EACWKELSSANGKRDEGCAFPSVDVSYGVNSTFASEAPEIIEILEKATFPLEEVNASLAY 304
Query: 262 ILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ +NK D L+ D+ W+ + ++E +
Sbjct: 305 MTDNKVDATAAAAQFLKAKGDIWGKWVS-------DEARGKIEAGL 343
>gi|149181989|ref|ZP_01860476.1| glycine betaine ABC transporter substrate-binding protein [Bacillus
sp. SG-1]
gi|148850334|gb|EDL64497.1| glycine betaine ABC transporter substrate-binding protein [Bacillus
sp. SG-1]
Length = 296
Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats.
Identities = 67/302 (22%), Positives = 108/302 (35%), Gaps = 26/302 (8%)
Query: 1 MYK------ILAVCLFLTTFSISYARDAD----------SCTPVRFADTGWTDIAATTAM 44
M K ++ L + + V F T WT T +
Sbjct: 1 MKKWKIGFIMILTAFLLIGCGTGNNDEGEDNAEQNGGNNEGVTVTFGVTPWTSTVPPTKV 60
Query: 45 TSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA 104
+ILE+ +GY N + L +D+FM W P + + + A
Sbjct: 61 AKLILED-MGYTVNETKADAGGVYTGLARGDLDVFMDAWLPVMHANYMEKYGD-KLDDTA 118
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKF 164
+ + + GI+S +DI + G KIYGIE G +MI
Sbjct: 119 VSYTEGELGWVIPTYVE--GIESVEDIKGKEDLFGGKIYGIEEGAGMTVTSKEMIEELGL 176
Query: 165 SLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEA 224
L + +SE +Q +R N P +FL W PHP+ ++ ++ L EE +
Sbjct: 177 DL---EYVASSEGGMLAQAQRMMGNEEPVLFLGWRPHPMFANYDLKVLTSPEEFFQ--TS 231
Query: 225 SVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLL 284
V+ + D D+ L K V +M+ I QD + V + + H D +
Sbjct: 232 EVHVITNKDLKDEAAEAYEFLSKWKMPVKDIEDMIVKID-EGQDAEEVAQEWIDNHQDQV 290
Query: 285 KN 286
K
Sbjct: 291 KE 292
>gi|227823270|ref|YP_002827242.1| putative substrate-binding component of ABC transporter
[Sinorhizobium fredii NGR234]
gi|227342271|gb|ACP26489.1| putative substrate-binding component of ABC transporter
[Sinorhizobium fredii NGR234]
Length = 344
Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats.
Identities = 55/347 (15%), Positives = 92/347 (26%), Gaps = 47/347 (13%)
Query: 1 MYKILAVCLFLTTFSISYARDA--DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M A + S A + V FA W A T + IL + + +
Sbjct: 6 MKLTFAAAGLMLAASAGSANASYCGDGKTVTFAGIDWESGAFITEVMKTILAKGYDCQVD 65
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
++ N + IF W +EE ++ V + GA V D
Sbjct: 66 SIPGNSVTLEQATANNDVQIFAEEWL-GRSDIWNKAVEEKNVVAVGKTFVGASEGWFVPD 124
Query: 119 V-----------GFALGIKSYQD---------IAKYKKELGAKIYGIEPGNEGNQRILDM 158
A +KS A ++ + G
Sbjct: 125 YVVHGDPARNIEAKAPDLKSVSQLSDQKIVEVFADPEEPSKGRFLNCPSGWTCEGVSTAK 184
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ K + A S I P +F W P I + L
Sbjct: 185 LEAYKLGEAYVNFRPGTGTALDSAITSAYLQGEPILFYYWSPTAIMGKFKLVQLEEPAYN 244
Query: 219 -----------------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKL 261
F V V S + + P I +L+ F + N +
Sbjct: 245 EACWKELSSANGKRDQGCAFPSVDVAYGVNSTFASEAPEIIAILEKATFPLEDVNGSLAY 304
Query: 262 ILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
+ +NK D L+T D+ W+ ++ ++E +
Sbjct: 305 MADNKVDATAAAAEFLKTKADIWGKWVS-------EEARGKIEASLK 344
>gi|146278860|ref|YP_001169019.1| substrate-binding region of ABC-type glycine betaine transport
system [Rhodobacter sphaeroides ATCC 17025]
gi|145557101|gb|ABP71714.1| Substrate-binding region of ABC-type glycine betaine transport
system [Rhodobacter sphaeroides ATCC 17025]
Length = 333
Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats.
Identities = 42/297 (14%), Positives = 89/297 (29%), Gaps = 31/297 (10%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFR-SLKNKGIDIFMG 81
++C + A+ W + +ILEE G + TF + D+
Sbjct: 25 ETCGRISIAEMNWASAGVAAQVDRIILEEAFGCDVELVTGDTMPTFTSMNEKGEPDMAPE 84
Query: 82 YWYPSLEKFIAPYLEEGSIKLVAENLQ-GAKYMLAVNDVGFALG---------IKSYQDI 131
W ++ + +EEG + + A L+ G + + +
Sbjct: 85 MWVNAVRAPLDAAVEEGRLVIAAPILEEGGIEGWWIPRYLAEAHPEIDSVKAALARPELF 144
Query: 132 AKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE-ASELASFSQIRRDQRNN 190
+ ++ PG ++ +GF L++ S I
Sbjct: 145 PAPEDPSVGAVHNCPPGWNCQISTENLFRALDAESRGFTLVDTGSSAGLDGSIANAYERR 204
Query: 191 IPAVFLSWEPHPINSDLNIH-------------------YLPGGEEISGFGEASVYTVVR 231
W P I ++ ++ + + V+TVV
Sbjct: 205 AGWFGYYWAPTAILGKYDMVRLPFSVPHDKAEWDSCTAVPDCAEPSVNAYPVSEVFTVVT 264
Query: 232 SDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+ +K + ++S ++ + N+ + R L T+P+L + WL
Sbjct: 265 PAFAEKAGVAMDYVGARRWSNGTVGAVLAWMDENQATNEEAARHFLETYPELWRAWL 321
>gi|163734593|ref|ZP_02142032.1| glycine betaine transporter, substrate-binding protein [Roseobacter
litoralis Och 149]
gi|161392086|gb|EDQ16416.1| glycine betaine transporter, substrate-binding protein [Roseobacter
litoralis Och 149]
Length = 315
Score = 161 bits (406), Expect = 2e-37, Method: Composition-based stats.
Identities = 40/313 (12%), Positives = 92/313 (29%), Gaps = 26/313 (8%)
Query: 1 MYKILAVCLF-LTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M ++ + A DS P+ W+ + + I EE +G
Sbjct: 1 MKRLTTALATGILACMPLAAFAEDSSDPIVIPIHNWSSQIVMSHVVGQIFEE-MGNNVEF 59
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ S++ + + M W + LE+G + ++ +
Sbjct: 60 VTTDSQAVYESVRLGDVTLEMEVWEGAFGASFRAALEKGGLHDAGDHNAVTREDWWYPMW 119
Query: 120 G--FALGIKSYQDIAKYKKELGAKIYGIEPGN---EGNQRILDMINNNKFSLKGFRLIEA 174
G+ S++ + + + G + + + +
Sbjct: 120 TKDACPGLPSWEALNECAEIFATPETGDKGRYLDGPVDWLKHGQERVEALEMDFVVVNAG 179
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG------------------- 215
S A +++I + + P V +W P+ + ++
Sbjct: 180 SAAALWAEIGAAEADKRPIVVFNWTPNFAEAVWPGEFVEFPEWVDGCDKDPSVGPNPNAL 239
Query: 216 EEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRT 275
+ + + +K P L I F+ A +M KL+ + + +
Sbjct: 240 YDCGNPAKGYMKKAAWDGMQEKWPAAYSTLTKISFTNAQIAQMAKLVDVDDYEPEEAAEI 299
Query: 276 MLRTHPDLLKNWL 288
L +PD+ + WL
Sbjct: 300 WLEENPDVWQPWL 312
>gi|254302261|ref|ZP_04969619.1| glycine betaine ABC superfamily ATP binding cassette transporter
membrane protein [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148322453|gb|EDK87703.1| glycine betaine ABC superfamily ATP binding cassette transporter
membrane protein [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 514
Score = 161 bits (406), Expect = 2e-37, Method: Composition-based stats.
Identities = 42/298 (14%), Positives = 95/298 (31%), Gaps = 31/298 (10%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL- 61
K++ + LF+ F ++ ++ + A T+ M + ++E+ K NI
Sbjct: 220 KLIILGLFIVIFGAYFSLNSKKDKTINIATKPMTEGYILGQMLTELIEQDTDLKVNITNG 279
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP---------------YLEEGSIKLVA 104
++ D++ Y S E + Y E+ +++ V
Sbjct: 280 VGGGTSNIHPAIVKGEFDLYPEYTGTSWEAVLKKEDSYDESKFDELQKEYKEKYNLEYVN 339
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNK 163
Y LAVN + + + K I+G E E ++
Sbjct: 340 LYGFNNTYGLAVNKDIAEKY--NLKTYSDLSKVSNNLIFGAEYDFFEREDGYKELQKVYN 397
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
K + ++ V + + + ++ L ++ +
Sbjct: 398 MDFKKK------IDMDIGLKYQAIKDKKIDVMVIFTTDGQLAVSDVIVLEDDKK--MYPS 449
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
TVVRS+ L + P + +L+ + ++ + + + + V R L+
Sbjct: 450 YRAGTVVRSEILSEYPELKPVLEKLNNILDDKTMADLNYQVESEGKKPEDVAREYLQE 507
>gi|87125043|ref|ZP_01080890.1| ABC transporter binding protein, glycine betaine/proline family
protein [Synechococcus sp. RS9917]
gi|86167363|gb|EAQ68623.1| ABC transporter binding protein, glycine betaine/proline family
protein [Synechococcus sp. RS9917]
Length = 322
Score = 161 bits (406), Expect = 2e-37, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 98/274 (35%), Gaps = 9/274 (3%)
Query: 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDI 78
A A +R + W D + + ++++ + L + + + S+ +D+
Sbjct: 50 ASSASGRPTLRMGWSPWADAEVVSLIAQQVIQQAYDIQVERVLADIGIQYASVARGDLDM 109
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDI--AKYKK 136
+ W P + + + + G + V D ++S ++
Sbjct: 110 MLMAWLPLTHRDYWTRVRD-RVVDFGSMYSG-RLGWVVPDYVSESEVRSIPNLGDPAIAS 167
Query: 137 ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFL 196
G ++ GI+PG+ NQ + + +L+ +S A + + + R V
Sbjct: 168 RFGDQVQGIDPGSGLNQASEEALRVYNLRD--LKLVSSSSAAMTAVLDQAIRQQRWVVVT 225
Query: 197 SWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALEN 256
SW PH + + + +L + + G G ++ + R P ++ L +
Sbjct: 226 SWTPHWMFARYKLRFLDDPDRVFG-GIEWIHALGRQQLDLDIPEVAGFLTRFHLPDRELS 284
Query: 257 EMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIG 290
+++ N+ + L HP ++ W G
Sbjct: 285 DLLLA--ANETSAEAAVEAYLARHPARVRYWTTG 316
>gi|296388270|ref|ZP_06877745.1| putative glycine betaine-binding protein precursor [Pseudomonas
aeruginosa PAb1]
Length = 256
Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats.
Identities = 48/263 (18%), Positives = 102/263 (38%), Gaps = 11/263 (4%)
Query: 28 VRFADTG-WTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPS 86
+ W+D ATT + + ++ E LGY+ + +A + ++ + +D + W P
Sbjct: 2 ITIGYVDGWSDSVATTHVAAEVIREKLGYEVKLMPVAAGIMWQGVARGKLDAMLSAWLPG 61
Query: 87 LEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE 146
+++ + +A N A+ L V + A I + K G ++ GI+
Sbjct: 62 THGAYYEKMKD-KVVNLAINYPDARIGLIVPEYVSANSIAD---LQAQKDAFGGRVVGID 117
Query: 147 PGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSD 206
G + + I ++L+ +S +++ R + P V W PH + +
Sbjct: 118 AGAGVMIKTDEAIKQYGLD---YKLVASSGSGMIAELTRAENEKKPVVVTGWIPHWMFAK 174
Query: 207 LNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKF-SVALENEMMKLILNN 265
+ +L +++ G E V TV K + LK + ++M I
Sbjct: 175 WKLKFLDDPKKVYGDTE-HVDTVANPALEAKAKPVWEFLKKFGWKDGNEVGQVMLAI-QE 232
Query: 266 KQDRQFVGRTMLRTHPDLLKNWL 288
+ + + +P +K+W+
Sbjct: 233 GAKPEDAAKQWVAANPGRVKDWV 255
>gi|254511802|ref|ZP_05123869.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Rhodobacteraceae bacterium
KLH11]
gi|221535513|gb|EEE38501.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Rhodobacteraceae bacterium
KLH11]
Length = 316
Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats.
Identities = 49/316 (15%), Positives = 104/316 (32%), Gaps = 25/316 (7%)
Query: 1 MYKILAVCLFLTTFSISYARDADS-CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M K+ L + ++A D + P++ A WT TT + +L+ GY
Sbjct: 1 MKKLSVSLLAIAVAGSAHAADMGAVDEPIKLAINEWTGQHVTTHVAGEMLKAA-GYNVEY 59
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ F++L + ID + W ++ A ++EG++ + + AK +A
Sbjct: 60 VTAGMMNQFQALADGDIDATLEIWSSNVSDEYAKKVDEGTVVEIGDLGLNAKEGIAYPAH 119
Query: 120 GFA--LGIKSYQDIAKYKKELGAKIY---GIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
G+ +++ + + G + L +
Sbjct: 120 VAELCPGLPAWEALKDCAQIFATAETLPGGRLVDYPADWGTPGADRMTGLELPFKAVPAG 179
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE------------------ 216
SE A +++R P + W+PH S ++ ++
Sbjct: 180 SEGALIAELRASTERKSPLLITFWQPHWAMSAYDVQFVDLPVGEEACFNDPAWGPNPNAV 239
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
F + ++ + DK P +L N + +V + MM I + + V
Sbjct: 240 NDCDFSPSRIFKAGWNGLEDKWPAAYEILSNYQLAVEDQQPMMGAIDVDGGSVEEVVAAW 299
Query: 277 LRTHPDLLKNWLIGVT 292
+ + + + T
Sbjct: 300 MAENEGKWRPVVDAAT 315
>gi|203287608|ref|YP_002222623.1| glycine betaine/L-proline transport system substrate-binding
protein; lipoprotein [Borrelia recurrentis A1]
gi|201084828|gb|ACH94402.1| glycine betaine/L-proline transport system substrate-binding
protein; lipoprotein [Borrelia recurrentis A1]
Length = 298
Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats.
Identities = 53/296 (17%), Positives = 100/296 (33%), Gaps = 15/296 (5%)
Query: 1 MYKILAVCLFLTTFSISYARDADSC--------TPVRFADTGWTDIAATTAMTSVILEEI 52
M I DS V+ A W T + V+ E
Sbjct: 1 MKGIFIPVFVSFVLIFVACSKDDSSDNGNPKSLKSVKIAYVNWIGETIATNIVRVVFE-R 59
Query: 53 LGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKY 112
+GY I + + ++ L + +D + W P+ +KF + + N +G
Sbjct: 60 IGYNVEILPVTTSIMYQYLASGRVDGMVSSWVPTADKFYYEK-FKDKFVDLGANYEGTLQ 118
Query: 113 MLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
V I S ++ E K+ GI+ G + + +N S + LI
Sbjct: 119 GFVVPSYV---TISSISELKGRGSEFKNKVIGIDAGAGTQLSVEETLNRYGLSK-EYELI 174
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRS 232
+SE + + + W+PH +I +L +S G S++++V+
Sbjct: 175 SSSESVMLASLESAINKQEWILVPLWQPHWAFVKYDIKFLDDPL-LSMGGPESIHSLVKL 233
Query: 233 DYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+ P+ L N + L +++ + +H D +KNW+
Sbjct: 234 GLQESDPDAYYLFDNFYWGDDLLLPLIEKNYKEPGQEYKNAVEFVDSHKDYIKNWV 289
>gi|293392811|ref|ZP_06637129.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Serratia odorifera DSM
4582]
gi|291424670|gb|EFE97881.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Serratia odorifera DSM
4582]
Length = 326
Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats.
Identities = 52/322 (16%), Positives = 107/322 (33%), Gaps = 29/322 (9%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
++A+ L + S A +S PV+FA W T + +L++ KT+
Sbjct: 16 LIALGLTFASSSAKAAGWCESGKPVKFAGLNWESGMLLTDIMQYVLQKGYDCKTDALPGN 75
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA- 122
+++ I +F W + + G V + GA V
Sbjct: 76 SITMEQAVGTNDIQVFAEEWI-GRSEVWNKAEKAGKAVSVGAPIVGAVEGWYVPRYVVEG 134
Query: 123 ----------LGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNNKFS 165
+KS D+AKY + + Y G ++ K
Sbjct: 135 DAKRNIKPSAPDLKSIPDLAKYAQVFKDQEEPNKGRFYNCPAGWTCELDNTAILKKFKLD 194
Query: 166 LKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEAS 225
K + A + I R P +F W P P+ L++ L
Sbjct: 195 DKLTNFRPGTGPALDTAILSSYRRGEPILFYYWSPTPLMGQLDLVKLEEPG---VDKNIQ 251
Query: 226 VYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLK 285
+ + S + + P + +L I + L N+ + + + + + HP++ +
Sbjct: 252 IKVGLSSVFNQQAPELVAVLGKINLPLDLLNQNLARMSKERIRSDKLALEFFKQHPEIWQ 311
Query: 286 NWLIGVTTFDGQDPSRQLERFM 307
+W+ +D +++++ +
Sbjct: 312 SWVS-------EDAAKKIQASL 326
>gi|107025649|ref|YP_623160.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia cenocepacia AU 1054]
gi|105895023|gb|ABF78187.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia cenocepacia AU 1054]
Length = 287
Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats.
Identities = 61/296 (20%), Positives = 117/296 (39%), Gaps = 13/296 (4%)
Query: 1 MY---KILAVCLFLTTFSISYARDADSCTPVRFADT-GWTDIAATTAMTSVILEEILGYK 56
M K+L ++S + AD+ ++ GW D AT+ + + ++E+ LGY+
Sbjct: 1 MKLFGKLLWTGALSAMVALSASALADTKPTLKIGYVEGWDDSVATSNVAARVIEKKLGYE 60
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ +A + ++ + +D + W P + + + N AK L V
Sbjct: 61 VKLVPVAAGIMWQGVARGDLDATLSAWLPVTHGSYWDEY-KAKVVDLGANFPDAKIGLIV 119
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
A KS D+ K G +I GI+ G ++ D I + + + L+ +S
Sbjct: 120 PAYVKA---KSIDDLNAEKGSFGGRIVGIDAGAGVMRKTDDAIKSYGLN---YTLMPSSG 173
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
A +++ R N P + W PH + + + +L +++ G G V +VV
Sbjct: 174 SAMTAELSRSVGANKPVIVTGWAPHWMFAKWKLRFLEDPKKVFG-GAEHVDSVVNPGLET 232
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVT 292
K + LK ++ + +M I N + + H D + +W G
Sbjct: 233 KAKPVVAFLKKFQWKPGEIDSVMLAI-QNGSKPEVAADAWIAAHADRVNSWTEGAQ 287
>gi|167033368|ref|YP_001668599.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas putida GB-1]
gi|166859856|gb|ABY98263.1| Substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas putida GB-1]
Length = 338
Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats.
Identities = 48/325 (14%), Positives = 99/325 (30%), Gaps = 43/325 (13%)
Query: 18 YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGID 77
A A+ P+ F GW A TT + +I+E GY T+ + +L +
Sbjct: 22 SAASAERSEPIHFGAIGWESGALTTEILRLIVERGYGYTTDTLPGSTVSMEVALARNDLQ 81
Query: 78 IFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA-----------LGIK 126
+ W + G + + + ++ A+ V ++
Sbjct: 82 VIAEEWA-GRSPAWVKAEQAGQVFALGDTVKNAEEGWWVPAYVIEGDAARKLKPLAPQLR 140
Query: 127 SYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
S +D+ +Y + + G + + S A
Sbjct: 141 SVEDLKRYPQVFRDPESPDKGRFLNSPSGWTSETVNSQKLKAYGLNDLYTNFRSGSGAAM 200
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE-EISGFG---------------- 222
++I R P +F W P P+ + L +
Sbjct: 201 DAEIGSAIRRGQPVLFYYWNPTPLMGRYKLVRLQEPPFNAQAWATLTDAGNPNPKGSRSL 260
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPD 282
A + V + D P++ + + + + N+ + + + + T LR +PD
Sbjct: 261 PAKLSIGVSKVFRDSYPDLVSVFERVDLPIDRLNQALAAMSEKRTPPRDAALTFLRDNPD 320
Query: 283 LLKNWLIGVTTFDGQDPSRQLERFM 307
+ K WL D + ++E +
Sbjct: 321 VWKTWLP-------ADIAAKVEASL 338
>gi|163737566|ref|ZP_02144983.1| glycine betaine transporter, substrate-binding protein [Phaeobacter
gallaeciensis BS107]
gi|161389092|gb|EDQ13444.1| glycine betaine transporter, substrate-binding protein [Phaeobacter
gallaeciensis BS107]
Length = 323
Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats.
Identities = 51/313 (16%), Positives = 90/313 (28%), Gaps = 22/313 (7%)
Query: 1 MYKI-LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M+KI + + A AD C V W TA+ ++EE G
Sbjct: 1 MFKISTGLGCVFAAAITASAAQADDCGEVSIMQGDWGSAQIVTAVAKFLMEEGYGCDVTA 60
Query: 60 KLLAVPVTF-RSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
L+ + DI W + I + G V +
Sbjct: 61 MPLSSNPALASVSETGEPDILTEIWTNGAPAYQGLVDSGAIIPVTEVLSDGGVEGFFVPN 120
Query: 119 VG--FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKF-SLKGFRLIEAS 175
+ + + IA + +G + + G +++ + S
Sbjct: 121 YLVEEHPELATIEGIAANPELVGNRFHNCPEGWTCLNVSTNLMKAGGLIDAGIENFVHGS 180
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSD-----------------LNIHYLPGGEEI 218
+ I N P W P + NI +
Sbjct: 181 GETLAASIAAAYENKEPWFGFYWAPTSVLGKYPMTLVDMGPHDPEKHACNITAECDTPAM 240
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLR 278
S F + V TV+ +++ + IS L+ N+ F+ A E + + +N L
Sbjct: 241 SAFPRSEVVTVLSKEFMAENAEISELMTNLSFTNAQMGETLAWVEDNNASYDEGAVHFLT 300
Query: 279 THPDLLKNWLIGV 291
T+ D+ WL
Sbjct: 301 TYKDVWGAWLNDA 313
>gi|116693169|ref|YP_838702.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia cenocepacia HI2424]
gi|206564153|ref|YP_002234916.1| hypothetical protein BCAM2317 [Burkholderia cenocepacia J2315]
gi|116651169|gb|ABK11809.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia cenocepacia HI2424]
gi|198040193|emb|CAR56176.1| putative exported protein [Burkholderia cenocepacia J2315]
Length = 287
Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats.
Identities = 61/296 (20%), Positives = 117/296 (39%), Gaps = 13/296 (4%)
Query: 1 MY---KILAVCLFLTTFSISYARDADSCTPVRFADT-GWTDIAATTAMTSVILEEILGYK 56
M K+L ++S + AD+ ++ GW D AT+ + + ++E+ LGY+
Sbjct: 1 MKLFGKLLWTGALSAMVALSASALADTKPTLKIGYVEGWDDSVATSNVAARVIEKKLGYE 60
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ +A + ++ + +D + W P + + + N AK L V
Sbjct: 61 VKLVPVAAGIMWQGVARGDLDATLSAWLPVTHGSYWDEY-KAKVVDLGANFPDAKIGLIV 119
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
A KS D+ K G +I GI+ G ++ D I + + + L+ +S
Sbjct: 120 PAYVKA---KSIDDLNAEKGSFGGRIVGIDAGAGVMRKTDDAIKSYGLN---YTLMPSSG 173
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
A +++ R N P + W PH + + + +L +++ G G V +VV
Sbjct: 174 SAMTAELSRSVGANKPVIVTGWAPHWMFAKWKLRFLEDPKKVFG-GAEHVDSVVNPGLET 232
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVT 292
K + LK ++ + +M I N + + H D + +W G
Sbjct: 233 KAKPVVAFLKKFQWKPGEIDSVMLAI-QNGSKPEAAADAWIAAHADRVNSWTEGAQ 287
>gi|149913955|ref|ZP_01902487.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Roseobacter sp. AzwK-3b]
gi|149812239|gb|EDM72070.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Roseobacter sp. AzwK-3b]
Length = 331
Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats.
Identities = 41/304 (13%), Positives = 91/304 (29%), Gaps = 19/304 (6%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
++A L + S +S P++ WT + + ++L + +GY
Sbjct: 25 LVATSLIASASVASGQSVPESTDPIKVVLNDWTGQLFSANVAGLLL-QEMGYNVEYVSAG 83
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA- 122
L+ + W ++ L G + + K
Sbjct: 84 ALPQHVGLQQGNLHFVSEVWSNNVGDIYPKALAAGEVVNLGSLGLDLKEGWVYPPYMEEV 143
Query: 123 -LGIKSYQDIAKYKKELGAKIY---GIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
G+ Y+ + A G + + + SE A
Sbjct: 144 CPGLPDYRALYDCAPAFAAPETFPKGRLITYPADWGTRSRDLVATIDMPLEPIAGGSEGA 203
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE-------------EISGFGEAS 225
+++R P + + ++PH I S+ ++++ GF +A+
Sbjct: 204 MIAELRSAIDAQQPILMMMYQPHWIFSEYELNFVEWNPIEGECVEESQMRETACGFQQAT 263
Query: 226 VYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLK 285
VV + + P R+L + + A EN + + + + + + K
Sbjct: 264 ADKVVWGGFEAEWPAAFRMLSALTLTNADENAAILAVDTQGAQVEDIAADWVAKNEATWK 323
Query: 286 NWLI 289
W+
Sbjct: 324 PWIE 327
>gi|271963331|ref|YP_003337527.1| proline/glycine betaine ABC transporter periplasmic component-like
protein [Streptosporangium roseum DSM 43021]
gi|270506506|gb|ACZ84784.1| ABC-type proline/glycine betaine transport systems periplasmic
components-like protein [Streptosporangium roseum DSM
43021]
Length = 330
Score = 160 bits (404), Expect = 3e-37, Method: Composition-based stats.
Identities = 52/295 (17%), Positives = 100/295 (33%), Gaps = 21/295 (7%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSL 71
T+ + + + VR A W A+ A+ S +LE+ LGYK K LA V++
Sbjct: 37 TSAGAAGSSTPAAGGTVRIAINPWAGYEASAAVLSYLLEKELGYKVEKKELAEQVSWEGF 96
Query: 72 KNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKY--MLAVNDVGFA--LGIKS 127
++ +D+ + W + E V G K + GI
Sbjct: 97 ESGDVDLIVENWG---HDDLKKTFIEEKKVAVEAGPTGNKGVIGWYIPKWMTEKYPGITD 153
Query: 128 YQDIAKYKKELGAKIYGIEP---GNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
Y+++ KY G + + + + L ++ SE A
Sbjct: 154 YKNLNKYAALFTTSESGGKGQLLFGDPSYVSNEEAIIKNLKLDYKVVVGGSEAALIESAT 213
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE-----------ISGFGEASVYTVVRSD 233
+ QR P +F W+PH + + + + + E + +
Sbjct: 214 QAQRQRKPLLFYFWDPHWLFDRVELVRVNLPPHTDGCDADPKKVACDYAELDLDKIASKR 273
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+ D L+KN ++ +N + I N+ + R + +P + W+
Sbjct: 274 FADTGGKAYELVKNFSWTNEAQNAVANGITNDGLSPEDAARKWVEANPAVWAPWI 328
>gi|114769477|ref|ZP_01447103.1| glycine betaine/proline ABC transporter, periplasmic glycine
betaine/proline-binding protein [alpha proteobacterium
HTCC2255]
gi|114550394|gb|EAU53275.1| glycine betaine/proline ABC transporter, periplasmic glycine
betaine/proline-binding protein [alpha proteobacterium
HTCC2255]
Length = 346
Score = 160 bits (403), Expect = 3e-37, Method: Composition-based stats.
Identities = 48/329 (14%), Positives = 95/329 (28%), Gaps = 28/329 (8%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M + S + C V + W A TA+ + ++ + G +
Sbjct: 25 MKIKMFAATAAMALSFGATSASADCGEVSITEMDWASSAVVTAVANFLMTQGYGCDVQVV 84
Query: 61 LLAVPVTFRSL-KNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ SL + D+ W S + E ++L G +
Sbjct: 85 PSSTVPALTSLAETGKPDLLTEVWANSTPSYEPLRAEGKLVELTNVLSDGGVEAWWIPAY 144
Query: 120 GFA--LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR-LIEASE 176
+ ++ I +G K + G + + + G S
Sbjct: 145 LAESNPELTTWDGIMANPSAVGGKFHDCPSGWACDIINNNNLKAAGAEAGGLERFQHGSG 204
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG-----------------EEIS 219
+ I + P W P + + + S
Sbjct: 205 ETLQTSIAAAYADQAPWFGYYWAPTAVLGKYPMVRVEVPAYNADSHACNGDVDCSNPGFS 264
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+ A V T ++D+ P ++ L+KN+ F+ A +++ L+N L T
Sbjct: 265 AYPAAKVVTAASGAFMDREPEVAALMKNVAFTNAQMGDVLAWRLDNNASYDEAAVYFLTT 324
Query: 280 HPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
+ D+ +WL D +L +N
Sbjct: 325 YKDVWGDWLS-------ADAKGKLAAILN 346
>gi|93005914|ref|YP_580351.1| substrate-binding region of ABC-type glycine betaine transport
system [Psychrobacter cryohalolentis K5]
gi|92393592|gb|ABE74867.1| Substrate-binding region of ABC-type glycine betaine transport
system [Psychrobacter cryohalolentis K5]
Length = 646
Score = 160 bits (403), Expect = 3e-37, Method: Composition-based stats.
Identities = 48/315 (15%), Positives = 96/315 (30%), Gaps = 33/315 (10%)
Query: 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDI 78
A P++F W T+ + I+E G + A P +L I I
Sbjct: 23 AAVPTCQAPIKFGALTWESGQFTSGVLKYIIESGYGCQVEEVPGAGPALETALSQDDIQI 82
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG--FALGIKSYQDIAKYKK 136
W + + GA V G++ YQD+ KY +
Sbjct: 83 IGEQWVGRSPIMTQAIEQNKVAVIGDTLKGGATQGWYVPKYVLDENPGLRRYQDLPKYAE 142
Query: 137 ELGA-------KIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRN 189
+ G ++ N + A ++I
Sbjct: 143 LFKDPENPSKSRFMNCPSGWTCEIFNTRLLKNTGLESDFNNAHPGTGAALDAEIASAFEQ 202
Query: 190 NIPAVFLSWEPHPINSDLNIHYLPGG--EEISG---------------FGEASVYTVVRS 232
+ P +F W+P + + + L ++ F + + V +
Sbjct: 203 HKPLLFYYWQPTGLMAKYDFAALEFPAHDDACWQDLLLADGTADCVSGFPVSPLGIAVST 262
Query: 233 DYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVT 292
+++ P ++ + K I+FS A N + + +K+ + LR +P + + WL
Sbjct: 263 PFINANPELADVFKKIQFSPAELNGAILEMSESKRSGEEQAFVFLRDNPQVWQQWLS--- 319
Query: 293 TFDGQDPSRQLERFM 307
+ + L +
Sbjct: 320 ----DEAATNLAAKL 330
>gi|33602766|ref|NP_890326.1| putative solute-binding periplasmic protein [Bordetella
bronchiseptica RB50]
gi|33577208|emb|CAE35765.1| putative solute-binding periplasmic protein [Bordetella
bronchiseptica RB50]
Length = 332
Score = 160 bits (403), Expect = 4e-37, Method: Composition-based stats.
Identities = 46/318 (14%), Positives = 89/318 (27%), Gaps = 34/318 (10%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKG 75
A + PVRF+ W + ILE+ G KT +++ +L+
Sbjct: 23 APSASACEIDRPVRFSGLNWESNLVMVGIQRFILEKGYGCKTAMEIGETLPMLAALQRGD 82
Query: 76 IDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIK--------- 126
+D+ W +E L G + V A V
Sbjct: 83 VDVTPEVWPGQIEGAWKKALASGKVLGVGHVFT-AGEGWYVPRYTVERHPDLRRAADLQR 141
Query: 127 SYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRD 186
+ +IYG G +++ + S A + I
Sbjct: 142 YKSTFTDPEDPAKGRIYGCPAGWACGTLNENLLKALQLEHDYNLFAPGSGAAQKAAIMSA 201
Query: 187 QRNNIPAVFLSWEPHPINSDLN-------------IHYLPGGEEISGFG----EASVYTV 229
+ VF W P + L+ + V T
Sbjct: 202 YKRKRDIVFYYWTPTALVGALDLVKLQLPAFDQAAYTCMTDPRCAKPVPTEFKPNPVVTG 261
Query: 230 VRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+ +D+ + P + R + + + + N K + LR + D+ K W+
Sbjct: 262 LNADFARQAPALHRFFEALTVPDEAIGATLGWLENEKAEADDAALYFLRQYGDVWKKWVP 321
Query: 290 GVTTFDGQDPSRQLERFM 307
D +++++ +
Sbjct: 322 -------ADVAQRVQAAL 332
>gi|115359234|ref|YP_776372.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia ambifaria AMMD]
gi|115284522|gb|ABI90038.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia ambifaria AMMD]
Length = 287
Score = 160 bits (403), Expect = 4e-37, Method: Composition-based stats.
Identities = 63/296 (21%), Positives = 118/296 (39%), Gaps = 13/296 (4%)
Query: 1 MY---KILAVCLFLTTFSISYARDADSCTPVRFADT-GWTDIAATTAMTSVILEEILGYK 56
M K+L ++S + AD+ ++ GW D AT+ + + ++E+ LGY+
Sbjct: 1 MKLFGKLLWTGAVSAMVALSASALADTKPTLKIGYVEGWDDSVATSNVAARVIEKKLGYE 60
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ +A + ++ + +D + W P + + V N AK L V
Sbjct: 61 VKLVPVAAGIMWQGVARGDLDATLSAWLPVTHGSYWSEY-KSKVVDVGANFPDAKIGLIV 119
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
D A KS +D+ K G +I GI+ G ++ + I N + L+ +S
Sbjct: 120 PDYVKA---KSIEDLNAEKSSFGGRIVGIDAGAGVMRKTDEAIKNYGL---SYTLMPSSG 173
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
A +++ R N P + W PH + + + +L +++ G G V +VV
Sbjct: 174 SAMTAELSRSVSANKPVIVTGWAPHWMFAKWKLRFLEDPKKVFG-GAEHVDSVVNPQLET 232
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVT 292
K + LK ++ + +M I N + + H D + +W G
Sbjct: 233 KAKPVVAFLKKFQWKPGEIDSVMLAI-QNGSKPEAAADAWIAAHADRVNSWTEGAQ 287
>gi|56696432|ref|YP_166789.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Ruegeria pomeroyi DSS-3]
gi|56678169|gb|AAV94835.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Ruegeria pomeroyi DSS-3]
Length = 333
Score = 160 bits (403), Expect = 4e-37, Method: Composition-based stats.
Identities = 41/314 (13%), Positives = 87/314 (27%), Gaps = 25/314 (7%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M A ADS P+ W+ + + I EE +G
Sbjct: 21 MKTFTTALATGVLALCPLAALADSSDPIVIPIHNWSSQIVMSNVVGQIFEE-MGVAVEFV 79
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ S++ + + + W + LE+G I V ++ +
Sbjct: 80 TTDSQAVYESVRLGDVTLELEVWEGAFGASFRAALEKGGIVDVGDHDAVTREDWWYPMWT 139
Query: 121 --FALGIKSYQDIAKYKKELGAKIYGIEPGN---EGNQRILDMINNNKFSLKGFRLIEAS 175
G+ ++ + G + + + + S
Sbjct: 140 KDACPGLPDWKALNDCAAVFATAETGDKGRYLDGPVDWLKHGKERVEALGMNFEVINAGS 199
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG-------------------E 216
A +++I + + P V +W P+ + ++
Sbjct: 200 AAALWAEIGAAEADKRPVVVFNWTPNFAEAVWPGEFVEFPEWVDGCDKDPAVGPNPDALY 259
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
+ + K P+ +L I F+ EM KL+ ++ +
Sbjct: 260 DCGNPATGYLKKAAWEGMEAKWPDAYAVLTRISFTNPQIAEMAKLVDVDEMEPDEAAEAW 319
Query: 277 LRTHPDLLKNWLIG 290
L + D+ + WL G
Sbjct: 320 LEANEDVWRPWLDG 333
>gi|325000532|ref|ZP_08121644.1| Substrate-binding region of ABC-type glycine betaine transport
system [Pseudonocardia sp. P1]
Length = 324
Score = 160 bits (403), Expect = 4e-37, Method: Composition-based stats.
Identities = 47/305 (15%), Positives = 101/305 (33%), Gaps = 24/305 (7%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL--EEILGY-KTNI 59
+++ + + + A VR W+ T A+ + ++ LG +
Sbjct: 22 RLVTALVAVLVTATGCAASGSDGPTVRLTQFPWSAAKVTNAILAEVVAGHPELGVGELKT 81
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ + + +D P+ + A E + LV GA+ V
Sbjct: 82 IQVGPATAWAGAQRGDVDALTEVAMPNQSELAAKA--EDRVGLVHPTYDGAEQGWYVPSY 139
Query: 120 GFALG-----IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
G + S + Y LG ++ +P + + +L + +
Sbjct: 140 ALEPGGPLAGLTSVSQLNDYADALGNRLVDSDPSFLTTEYNTKRLAGYGLNL---EQVTS 196
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE-----------EISGFGE 223
SE A +++RR P + + PH + ++ + L +
Sbjct: 197 SEAAQIAELRRAYERRQPILVYLYRPHYVFEEMELTRLSEPNPPRDDCYTTGDGACAMPD 256
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDL 283
S +T D P LL+ + + +M+K + + D + V R + +PD
Sbjct: 257 YSAWTAAAGDLGATAPRFDALLRRFELPLDDVEKMLKRVDVDNADVETVARDYVAANPDR 316
Query: 284 LKNWL 288
++ W+
Sbjct: 317 VREWV 321
>gi|170697167|ref|ZP_02888262.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia ambifaria IOP40-10]
gi|170138003|gb|EDT06236.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia ambifaria IOP40-10]
Length = 287
Score = 160 bits (403), Expect = 4e-37, Method: Composition-based stats.
Identities = 63/294 (21%), Positives = 118/294 (40%), Gaps = 13/294 (4%)
Query: 1 MY---KILAVCLFLTTFSISYARDADSCTPVRFADT-GWTDIAATTAMTSVILEEILGYK 56
M K+L ++S + AD+ ++ GW D AT+ + + ++E+ LGY+
Sbjct: 1 MKLFGKLLWTGAVSAMVALSASALADTKPTLKIGYVEGWDDSVATSNVAARVIEKKLGYE 60
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ +A + ++ + +D + W P + + V N AK L V
Sbjct: 61 VKLVPVAAGIMWQGVARGDLDATLSAWLPVTHGSYWSEY-KSKVVDVGANFPDAKIGLIV 119
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
D A KS +D+ K G +I GI+ G ++ + I N + L+ +S
Sbjct: 120 PDYVKA---KSIEDLNAEKSSFGGRIVGIDAGAGVMRKTDEAIKNYGL---SYTLMPSSG 173
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
A +++ R N P + W PH + + + +L +++ G G V +VV
Sbjct: 174 SAMTAELSRSVSANKPVIVTGWAPHWMFAKWKLRFLEDPKKVFG-GAEHVDSVVNPQLET 232
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIG 290
K + LK ++ + +M I N + + H D + +W G
Sbjct: 233 KAKPVVAFLKKFQWKPGEIDSVMLAI-QNGSKPEAAADAWIAAHADRVNSWTEG 285
>gi|172064024|ref|YP_001811675.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia ambifaria MC40-6]
gi|171996541|gb|ACB67459.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia ambifaria MC40-6]
Length = 287
Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats.
Identities = 62/294 (21%), Positives = 117/294 (39%), Gaps = 13/294 (4%)
Query: 1 MY---KILAVCLFLTTFSISYARDADSCTPVRFADT-GWTDIAATTAMTSVILEEILGYK 56
M K+L ++S + AD+ ++ GW D AT+ + + ++E+ LGY+
Sbjct: 1 MKLFGKLLWTGAVSAMVALSASALADTKPTLKIGYVEGWDDSVATSNVAARVIEKKLGYE 60
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ +A + ++ + +D + W P + + V N AK L V
Sbjct: 61 VKLVPVAAGIMWQGVARGDLDATLSAWLPVTHGSYWSEY-KSKVVDVGANFPDAKIGLIV 119
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
D A KS D+ K G +I GI+ G ++ + I + + L+ +S
Sbjct: 120 PDYVKA---KSIDDLNAEKSSFGGRIVGIDAGAGVMRKTDEAIKSYGL---SYTLMPSSG 173
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
A +++ R N P + W PH + + + +L +++ G G V +VV
Sbjct: 174 SAMTAELSRSVSANKPVIVTGWAPHWMFAKWKLRFLEDPKKVFG-GAEHVDSVVNPQLET 232
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIG 290
K + LK ++ + +M I N + + H D + +W G
Sbjct: 233 KAKPVVAFLKKFQWKPGEIDSVMLAI-QNGSKPEAAADAWIAAHADRVNSWTEG 285
>gi|163856029|ref|YP_001630327.1| glycine betaine-binding periplasmic protein precursor [Bordetella
petrii DSM 12804]
gi|163259757|emb|CAP42058.1| Glycine betaine-binding periplasmic protein precursor [Bordetella
petrii]
Length = 335
Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats.
Identities = 40/318 (12%), Positives = 95/318 (29%), Gaps = 34/318 (10%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKG 75
+ A + PVRF+ W + I+E G T++++ +L+ +
Sbjct: 26 AAAAPQCEIDQPVRFSGLNWESNLVLAGIERFIVEHGYGCATSVEIGETLAMLAALQRRD 85
Query: 76 IDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIK--------- 126
+D+ W +E L+ G + A +
Sbjct: 86 VDVTPEVWPGQIEVAWDKALKSGKVLAAGHVY-DAGEGWYIPRYTAERHPDLKSAADLAR 144
Query: 127 SYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRD 186
+ A + +IYG G +++ K + S A + I
Sbjct: 145 YTKVFADPEDPSRGRIYGCPAGWACGTLNTNLLKALKLDSQYAMFAPGSGAAQKAAIVSA 204
Query: 187 QRNNIPAVFLSWEPHPINSDLN-------------IHYLPGGEEISGFG----EASVYTV 229
+ VF W P + L+ + + V T
Sbjct: 205 YKRKRDIVFYYWTPTALVGALDLVKLQLPAFDQAAYTCMTDPKCEHPVPTEFKANKVVTG 264
Query: 230 VRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+ +++ + P + + ++ + + N + + + LR +PD+ + W+
Sbjct: 265 LNAEFARQAPQLKTFFDKLSVPAPAIDDTLGWLENQGAEPEDAAQYFLRKYPDVWRKWVP 324
Query: 290 GVTTFDGQDPSRQLERFM 307
+ + +++ +
Sbjct: 325 -------AEVAERVQSSL 335
>gi|33594441|ref|NP_882085.1| putative solute-binding periplasmic protein [Bordetella pertussis
Tohama I]
gi|33564516|emb|CAE43831.1| putative solute-binding periplasmic protein [Bordetella pertussis
Tohama I]
gi|332383852|gb|AEE68699.1| putative solute-binding periplasmic protein [Bordetella pertussis
CS]
Length = 332
Score = 159 bits (402), Expect = 5e-37, Method: Composition-based stats.
Identities = 46/318 (14%), Positives = 89/318 (27%), Gaps = 34/318 (10%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKG 75
A + PVRF+ W + ILE+ G KT +++ +L+
Sbjct: 23 APSASACEIDRPVRFSGLNWESNLVMVGIQRFILEKGYGCKTAMEIGETLPMLAALQRGD 82
Query: 76 IDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIK--------- 126
+D+ W +E L G + V A V
Sbjct: 83 VDVTPEVWPGQIEGAWKKALASGKVLGVGHVFT-AGEGWYVPRYTVERHPDLRQAADLQR 141
Query: 127 SYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRD 186
+ +IYG G +++ + S A + I
Sbjct: 142 YKSTFTDPEDPAKGRIYGCPAGWACGTLNENLLKALQLEHDYNLFAPGSGAAQKAAIMSA 201
Query: 187 QRNNIPAVFLSWEPHPINSDLN-------------IHYLPGGEEISGFG----EASVYTV 229
+ VF W P + L+ + V T
Sbjct: 202 YKRKRDIVFYYWTPTALVGALDLVKLQLPAFDQAAYTCMTDPRCAKPVPTEFKPNPVVTG 261
Query: 230 VRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+ +D+ + P + R + + + + N K + LR + D+ K W+
Sbjct: 262 LNADFARQAPALHRFFEALTVPDEAIGATLGWLENEKAEADDAALYFLRQYGDVWKKWVP 321
Query: 290 GVTTFDGQDPSRQLERFM 307
D +++++ +
Sbjct: 322 -------ADVAQRVQAAL 332
>gi|70729971|ref|YP_259710.1| histidine transporter, periplasmic histidine-binding protein
[Pseudomonas fluorescens Pf-5]
gi|68344270|gb|AAY91876.1| histidine transporter, periplasmic histidine-binding protein
[Pseudomonas fluorescens Pf-5]
Length = 337
Score = 159 bits (401), Expect = 6e-37, Method: Composition-based stats.
Identities = 45/320 (14%), Positives = 98/320 (30%), Gaps = 43/320 (13%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGY 82
+ P+ FAD W + T + +++E+ G T+ +L N I +
Sbjct: 26 AAPQPIHFADLNWESGSLITEILRIMVEQGYGLPTDTLPGTTITLETALANNDIQVIGEE 85
Query: 83 WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA-----------LGIKSYQDI 131
W EG ++ + + ++GA V + ++S D+
Sbjct: 86 WA-GRSPVWVKAEAEGKVQALGDTVKGATEGWWVPEYVIKGDPAKGIKPLAPELRSVTDL 144
Query: 132 AKYKKELGA-------KIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
A+YK + G + S A ++I
Sbjct: 145 ARYKDVFKDPESPDKGRFLNSPIGWTSEIVNQQKLKAYGLQDSYVNFRSGSGAALDAEIS 204
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE-EISGFG----------------EASVY 227
R P +F W P P+ + L + + + +
Sbjct: 205 SAIRRGKPILFYYWSPTPLLGRFKLVQLQEPPFDAEAWKTLTDAANPNPRPTRSLASRLS 264
Query: 228 TVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
V + + + P +++ + + N + + N + R L+ HPD+ + W
Sbjct: 265 IGVSTPFQKQYPQLAQFFAKVDLPIEPLNRALAQMSENHSAPRDAARAFLKQHPDVWRAW 324
Query: 288 LIGVTTFDGQDPSRQLERFM 307
+ +D + ++ +
Sbjct: 325 VP-------RDVADRIAATL 337
>gi|170737568|ref|YP_001778828.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia cenocepacia MC0-3]
gi|169819756|gb|ACA94338.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia cenocepacia MC0-3]
Length = 287
Score = 159 bits (401), Expect = 6e-37, Method: Composition-based stats.
Identities = 63/296 (21%), Positives = 118/296 (39%), Gaps = 13/296 (4%)
Query: 1 MY---KILAVCLFLTTFSISYARDADSCTPVRFADT-GWTDIAATTAMTSVILEEILGYK 56
M K+L ++S + AD+ ++ GW D AT+ + + ++E+ LGY+
Sbjct: 1 MKLFGKMLWTGALSAMVALSASALADTKPTLKIGYVEGWDDSVATSNVAARVIEKKLGYE 60
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ +A + ++ + +D + W P + + V N AK L V
Sbjct: 61 VKLVPVAAGIMWQGVARGDLDATLSAWLPVTHGSYWSEY-KSKVVDVGANFPDAKIGLIV 119
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
D A KS +D+ K G +I GI+ G ++ + I N + L+ +S
Sbjct: 120 PDYVKA---KSIEDLNAEKSSFGGRIVGIDAGAGVMRKTDEAIKNYGL---SYTLMPSSG 173
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
A +++ R N P + W PH + + + +L +++ G G V +VV
Sbjct: 174 SAMTAELSRSVGANKPVIVTGWAPHWMFAKWKLRFLEDPKKVFG-GAEHVDSVVNPGLET 232
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVT 292
K + LK ++ + +M I N + + H D + +W G
Sbjct: 233 KAKPVVAFLKKFQWKPGEIDSVMLAI-QNGSKPEAAADAWIAAHADRVNSWTEGAQ 287
>gi|323694649|ref|ZP_08108813.1| ABC transporter permease [Clostridium symbiosum WAL-14673]
gi|323501289|gb|EGB17187.1| ABC transporter permease [Clostridium symbiosum WAL-14673]
Length = 613
Score = 159 bits (401), Expect = 6e-37, Method: Composition-based stats.
Identities = 61/326 (18%), Positives = 104/326 (31%), Gaps = 36/326 (11%)
Query: 10 FLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFR 69
+ T A + + FAD GW + A+ ++ E GY + P+
Sbjct: 1 MVLTLGAGLAGCSTKSREIAFADVGWDSVKFHNAVAGLVAESAFGYTWKEMPGSSPIMHE 60
Query: 70 SLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA------- 122
+LKN ID+ M W +L + K + N V
Sbjct: 61 ALKNGEIDVNMEEWTDNLSTYYEDRDAGL-FKDLGTNFGDNIQGFYVPRYVIEGDPERGI 119
Query: 123 ----LGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
G+K+ QD+ KY +IYG PG E N+ + + N +
Sbjct: 120 EPMAPGLKTVQDLKKYADVFPDDEKPGMGRIYGAIPGWEINEIMQKKVKFNGLDSQYNYF 179
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF---------G 222
S+ A + P V WEP + ++ L +
Sbjct: 180 QPGSDAALSAAFTSAFEKGEPIVGYYWEPTWLTGKYDMVLLEDYPYVDLEKYKAGETACP 239
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI-LNNKQDRQFVGRTMLRTHP 281
V V + + ++ P LK + S AL +E + + N + L H
Sbjct: 240 SVDVTVGVSNQFYEEEPEFCEFLKKYETSSALTSEALAYMQDNEGVTYTDTAKWFLTEHS 299
Query: 282 DLLKNWLIGVTTFDGQDPSRQLERFM 307
+L+ WL +D + + +
Sbjct: 300 ELIDQWLP-------EDKAEDVRGAL 318
>gi|34762738|ref|ZP_00143727.1| Glycine betaine transport system permease protein; Glycine
betaine-binding protein [Fusobacterium nucleatum subsp.
vincentii ATCC 49256]
gi|27887588|gb|EAA24668.1| Glycine betaine transport system permease protein; Glycine
betaine-binding protein [Fusobacterium nucleatum subsp.
vincentii ATCC 49256]
Length = 513
Score = 159 bits (401), Expect = 6e-37, Method: Composition-based stats.
Identities = 40/298 (13%), Positives = 95/298 (31%), Gaps = 31/298 (10%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL- 61
K++ + LF+ F ++ ++ + A T+ M + ++E+ K NI
Sbjct: 219 KLIILGLFIVMFGAYFSLNSKKNKTINIATKPMTEGYILGQMLTELIEQDTDLKVNITNG 278
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP---------------YLEEGSIKLVA 104
++ D++ Y S E + Y E+ +++
Sbjct: 279 VGGGTSNIHPAIVKGEFDLYPEYTGTSWEAVLKKEASYDESKFDELQKEYKEKYNLEYAN 338
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNK 163
Y LAVN + + + K I+G E E ++
Sbjct: 339 LYGFNNTYGLAVNKDIAEKY--NLKTYSDLAKVSNNLIFGAEYDFFEREDGYKELQKVYN 396
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+ + + ++ V + + + ++ L + + +
Sbjct: 397 MNF------KKQIDMDIGLKYQAMKDKKIDVMVIFTTDGQLAISDVVVLED--DKNMYPS 448
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
TVVRS+ L + P + +L+ + ++ + + + + V R L+
Sbjct: 449 YRAGTVVRSEILSEYPELKPVLEKLNNILDDKTMADLNYQVESEGKKPEDVAREYLQE 506
>gi|148238700|ref|YP_001224087.1| ABC-type proline/glycine betaine transport systems, periplasmic
components [Synechococcus sp. WH 7803]
gi|147847239|emb|CAK22790.1| ABC-type proline/glycine betaine transport systems, periplasmic
components [Synechococcus sp. WH 7803]
Length = 322
Score = 159 bits (401), Expect = 6e-37, Method: Composition-based stats.
Identities = 44/273 (16%), Positives = 103/273 (37%), Gaps = 9/273 (3%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
A +P+R + W D + + ++++ + L + + + SL +D+
Sbjct: 52 TSASIGSPLRLGWSPWADAEVISLIAQKVIQQAYNIEVERVLADIGIQYASLARGDLDMM 111
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDI--AKYKKE 137
+ W P + + E + G + V D + S Q +
Sbjct: 112 LMAWLPLTHRDYWRRVRE-RVIDFGSMYAG-RLGWVVPDYVSKAELSSIQQLQNPALAAR 169
Query: 138 LGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLS 197
++ GI+PG+ NQ + + + + + L+ +S A + + + R + S
Sbjct: 170 FNNRVQGIDPGSGLNQASAEALKSYQLND--LNLVASSSAAMTAVLDQAIRREQWVIVTS 227
Query: 198 WEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENE 257
W PH + + + +L + + G G ++ + R + P+++ L ++
Sbjct: 228 WMPHWMFARYKLRFLDDPKRVFG-GIEWIHALGRPSLDVEAPDVAAFLTRFHLPDQEMSD 286
Query: 258 MMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIG 290
++ N++ + L THP ++ W G
Sbjct: 287 LLLKA--NERSAERAVDDYLETHPARVRYWTTG 317
>gi|289625970|ref|ZP_06458924.1| histidine transporter, periplasmic histidine-binding protein
[Pseudomonas syringae pv. aesculi str. NCPPB3681]
gi|330869367|gb|EGH04076.1| histidine transporter, periplasmic histidine-binding protein
[Pseudomonas syringae pv. aesculi str. 0893_23]
Length = 332
Score = 159 bits (401), Expect = 6e-37, Method: Composition-based stats.
Identities = 49/324 (15%), Positives = 102/324 (31%), Gaps = 43/324 (13%)
Query: 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDI 78
A A+ P++F W + T + ++E+ GY+T+ + +L I +
Sbjct: 17 AGAAEKNAPIQFGALTWESGSLITEVLRTLVEKGYGYRTDTLPGSTVSLETALAKNDIQV 76
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA-----------LGIKS 127
W +G + + ++GA V + +KS
Sbjct: 77 IAEEW-TGRSPVWVKAEADGKVLGLGNIVKGATEGWWVPEYVIKGDAAKGIKPVAPDLKS 135
Query: 128 YQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
D+A+YK + G + + S A
Sbjct: 136 VADLARYKDVFKDPESPDKGRFLNSPSGWTSEIVNTQKLKAYGLTDSFVNFRTGSGAALD 195
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG-EEISGFG----------------E 223
+++ R P +F W P P+ + L + +
Sbjct: 196 AEVASAIRRGKPVLFYYWSPTPLLGKYKLIKLEEPAFDAEAWKTLTDASNPNPRGTSSLA 255
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDL 283
A + V +++ + P + + KN+ F + L N + + + +D L+ HP++
Sbjct: 256 AKLSIGVSAEFSKQYPELVSVFKNVDFPIDLLNRTLGEMSDKHEDPGVAAARFLKQHPEV 315
Query: 284 LKNWLIGVTTFDGQDPSRQLERFM 307
K WL D + ++ +
Sbjct: 316 WKAWLP-------ADVAAKVSHSL 332
>gi|167572349|ref|ZP_02365223.1| ABC transporter, periplasmic glycine/betaine-binding protein
[Burkholderia oklahomensis C6786]
Length = 287
Score = 159 bits (401), Expect = 6e-37, Method: Composition-based stats.
Identities = 58/292 (19%), Positives = 113/292 (38%), Gaps = 13/292 (4%)
Query: 1 MY---KILAVCLFLTTFSISYARDADSCTPVRFADT-GWTDIAATTAMTSVILEEILGYK 56
M K++ L +++ AD+ ++ GW D AT+ + + I+E LGY
Sbjct: 1 MKFLAKLMGCGLLSMMLAVASPVQADTKPTLKIGYVEGWDDSVATSNVAARIIETRLGYP 60
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ +A V ++ + +D + W P + + + + N AK L V
Sbjct: 61 VQLVPVAAGVMWQGVARGDLDATLSAWLPVTQGAYWD-QFKTKVVDLGTNFPDAKIGLIV 119
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
A I+ + K + +++ GI+ G ++ D I + + L+ +S
Sbjct: 120 PSYVKAKTIED---LNAEKADFASRVVGIDAGAGVMRKTDDAIKAYGLN---YSLMPSSG 173
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
A +++ R N P V W PH + + + +L +++ G E V +VV
Sbjct: 174 SAMTAELARSIHANKPVVVTGWAPHWMFAKWKLRFLDDPKKVYGEAE-HVDSVVNPALET 232
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
K + LK ++ + +M I N + H D + W+
Sbjct: 233 KAKPVVAFLKKFQWKPGEIDGVMLAI-QNGSKPAAAADAWIAAHGDRVGEWV 283
>gi|110677432|ref|YP_680439.1| glycine betaine transporter, substrate-binding protein [Roseobacter
denitrificans OCh 114]
gi|109453548|gb|ABG29753.1| glycine betaine transporter, substrate-binding protein [Roseobacter
denitrificans OCh 114]
Length = 315
Score = 159 bits (401), Expect = 6e-37, Method: Composition-based stats.
Identities = 39/313 (12%), Positives = 90/313 (28%), Gaps = 25/313 (7%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K ADS P+ W+ + + + EE +G
Sbjct: 1 MNKFTTALATGVLAFAPAFAMADSDDPIIIPIHNWSSQIVMSNVVGQMFEE-MGLNVEYV 59
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ S++ + + M W + +E+G I ++ +
Sbjct: 60 TTDSQAVYESIRLGDVTLGMEVWEGAFGASFRAAMEKGGIVDAGDHNAVTREDWWYPMWT 119
Query: 121 --FALGIKSYQDIAKYKKELGAKIYGIEPGN---EGNQRILDMINNNKFSLKGFRLIEAS 175
G+ S++ + + + G + + + + S
Sbjct: 120 KDACPGLPSWEALNECAEIFATPETGDKGRYLDGPVDWLKHGKERVEALGMDFEVINAGS 179
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG-------------------E 216
A +++I + + P V +W P+ + ++
Sbjct: 180 AAALWAEIGAAEADKRPIVVFNWTPNFAEAVWPGEFVEFPEWVDGCDKDPAVGPNPDALY 239
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
+ + + +K P+ +L+ I F+ +M KL+ + +
Sbjct: 240 DCGNPADGYMKKAAWEGMEEKWPDAFAVLQRISFTNPQIAQMAKLVDIEDYEPEEAAEIW 299
Query: 277 LRTHPDLLKNWLI 289
L + DL + WL
Sbjct: 300 LEENEDLWRPWLD 312
>gi|71734641|ref|YP_274509.1| histidine transporter, periplasmic histidine-binding protein
[Pseudomonas syringae pv. phaseolicola 1448A]
gi|71555194|gb|AAZ34405.1| histidine transporter, periplasmic histidine-binding protein
[Pseudomonas syringae pv. phaseolicola 1448A]
Length = 340
Score = 159 bits (401), Expect = 6e-37, Method: Composition-based stats.
Identities = 43/330 (13%), Positives = 100/330 (30%), Gaps = 33/330 (10%)
Query: 1 MYKILAVCLFLTTFSISYARD-----ADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
+ K L L A +S PV+FA W T + ++L++ G
Sbjct: 21 IRKNLTATLIALGLFAGSAASQAAGWCESGKPVKFAGLNWESGMLLTDILQILLKDGYGC 80
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
+ +L N I + W + G + V + GA
Sbjct: 81 AIDTLPGNSITMESALSNNDIQVLAEEWI-GRSEVWNKAAASGKVVGVGAPIIGATEGWY 139
Query: 116 VNDVGFALGIKSYQD------------------IAKYKKELGAKIYGIEPGNEGNQRILD 157
V K ++ + Y G +
Sbjct: 140 VPRYLVEGDAKRNLKPKAPDLKKIADLTQYVALFKDPEEPDKGRFYNCPAGWTCELENSE 199
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
M+ + + A + + + P +F W P P+ +++ L
Sbjct: 200 MLKSYGLEASYTNFRPGTGPALDAAVLSSYKRGEPILFYYWSPTPLMGQVDLLKLEEKPG 259
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTML 277
+ + S+ + + + ++ P + +L+ + + L N+ + + + D + +
Sbjct: 260 VDK--KISIQVGLSNVFHEQAPELVAVLEKVNLPIDLLNQNLARMSKERIDSPKLAKIFF 317
Query: 278 RTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ HP++ W+ ++++E +
Sbjct: 318 KEHPEIWHTWVSDA-------AAKKIEATL 340
>gi|332286150|ref|YP_004418061.1| substrate-binding region of ABC-type glycine betaine transport
system [Pusillimonas sp. T7-7]
gi|330430103|gb|AEC21437.1| substrate-binding region of ABC-type glycine betaine transport
system [Pusillimonas sp. T7-7]
Length = 654
Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats.
Identities = 51/330 (15%), Positives = 93/330 (28%), Gaps = 42/330 (12%)
Query: 1 MY---KILAVCLFLTTFSISYARDA-----DSCTPVRFADTGWTDIAATTAMTSVILEEI 52
M + L F + A A + PV+ AD W + TT + +L
Sbjct: 1 MKQLLRALGAVAVCLAFMLPVAGRAQTVSCNGGQPVKLADLSWESASFTTHVVGKLLSMG 60
Query: 53 LGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKY 112
G T + A +L + I W E + + GA+
Sbjct: 61 YGCATQVVPGASAAIESALVQNDLQIIAEMWSGRSEIIEQAIQQGKVRIVGDTLAGGAEQ 120
Query: 113 MLAVNDV-----------GFALGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQR 154
V D A + S++D+ KY + G +
Sbjct: 121 GWYVPDYLVHGDPERGIKAQAPDLHSWRDLPKYSALFTDPEEPGKGRFLNCPSGWVCEKT 180
Query: 155 ILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHY-LP 213
++ + + A + I P +F W+P + + H
Sbjct: 181 NSRLLRLHGLEKDYTNFRAGTGAALDAAISSAYDRGQPILFYYWQPAGLMAKYKFHKIEQ 240
Query: 214 GGEEISGFGE---------------ASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEM 258
+ A + V + + + P + + ++F L N M
Sbjct: 241 DPFNQQCWDTIVSGKGELCSSDFLLARLAVAVSAPFATQSPELMAFFEKLQFKPELLNRM 300
Query: 259 MKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+ + + + LR HPD+ WL
Sbjct: 301 ILEMTETRASGDAMADRFLREHPDVWHAWL 330
>gi|126725658|ref|ZP_01741500.1| glycine betaine/proline ABC transporter, periplasmic glycine
betaine/proline-binding protein [Rhodobacterales
bacterium HTCC2150]
gi|126704862|gb|EBA03953.1| glycine betaine/proline ABC transporter, periplasmic glycine
betaine/proline-binding protein [Rhodobacterales
bacterium HTCC2150]
Length = 322
Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats.
Identities = 45/329 (13%), Positives = 92/329 (27%), Gaps = 28/329 (8%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K+ ++ C V + W A TA+ + I+E+ G
Sbjct: 1 MKKMFTGVAAAAALTMGANAAYADCGDVTITEMNWASSAVVTAVATFIMEQGYGCSVQKV 60
Query: 61 LLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ + DI W S + E ++L G +
Sbjct: 61 PSSTVTAITSITETGEPDILTEVWSNSTPSYPGLVAEGKLVELADVLSDGGVEAWWIPAY 120
Query: 120 GFA--LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR-LIEASE 176
+ +++ I +G K + G + + + G S
Sbjct: 121 LAESNPELTTWEGIMANPAAVGGKFHDCPSGWACDIINNNNLIAAGAEAGGLERFQHGSG 180
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISG---------------- 220
+ I + P W P + + + +
Sbjct: 181 ETLQTSIAAAYADKAPWFGYYWAPTAVLGKYPMVAVEVPAYNAEGHACNGVDGCENPVFG 240
Query: 221 -FGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+ + V T ++++ P + L++N+ F+ A E++ L+N L
Sbjct: 241 AYPASKVVTAAAGSFVEREPAAAELMRNVAFTNAQMGEVLAWRLDNNASYDEAAVYFLTN 300
Query: 280 HPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
+ D+ WL D +L +N
Sbjct: 301 YKDVWAGWLS-------DDAKSRLAAILN 322
>gi|262066122|ref|ZP_06025734.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Fusobacterium
periodonticum ATCC 33693]
gi|291380217|gb|EFE87735.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Fusobacterium
periodonticum ATCC 33693]
Length = 514
Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats.
Identities = 42/298 (14%), Positives = 96/298 (32%), Gaps = 31/298 (10%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL- 61
K++ + LF+ F ++ ++ + A T+ M + ++E+ K NI
Sbjct: 220 KLIILGLFIVIFGAYFSLNSKKDKTINIATKPMTEGYILGQMLTELIEQDTDLKVNITNG 279
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP---------------YLEEGSIKLVA 104
++ D++ Y S E + Y E+ +++ V
Sbjct: 280 VGGGTSNIHPAIVKGEFDLYPEYTGTSWEAVLKKEASYDESKFDELQKEYKEKYNLEYVN 339
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNK 163
Y LAVN + + + K I+G E E +++
Sbjct: 340 LYGFNNTYGLAVNKDIAEKY--NLKTYSDLAKVSNNLIFGAEYDFFEREDGYIELQKVYN 397
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
K + ++ V + + + ++ L ++ +
Sbjct: 398 IDFKKK------IDMDIGLKYQAMKDKKIDVMVIFTTDGQLAISDVVVLEDDKK--MYPS 449
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
TVVRS+ L + P + +L+ + ++ + + + + V R L+
Sbjct: 450 YRAGTVVRSEILSEYPELKPVLEKLNNILDDKTMADLNYQVESEGKKPEDVAREYLQE 507
>gi|167565247|ref|ZP_02358163.1| ABC transporter, periplasmic glycine/betaine-binding protein
[Burkholderia oklahomensis EO147]
Length = 287
Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats.
Identities = 58/292 (19%), Positives = 112/292 (38%), Gaps = 13/292 (4%)
Query: 1 MY---KILAVCLFLTTFSISYARDADSCTPVRFADT-GWTDIAATTAMTSVILEEILGYK 56
M K++ L +++ AD+ ++ GW D AT+ + + I+E LGY
Sbjct: 1 MKFLAKLMGCGLLSMMLAVASPVQADTKPTLKIGYVEGWDDSVATSNVAARIIETRLGYP 60
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ +A V ++ + +D + W P + + + + N AK L V
Sbjct: 61 VQLVPVAAGVMWQGVARGDLDATLSAWLPVTQGAYWD-QFKTKVVDLGTNFPDAKIGLIV 119
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
A I+ + K + ++ GI+ G ++ D I + + L+ +S
Sbjct: 120 PSYVKAKTIED---LNAEKADFAGRVVGIDAGAGVMRKTDDAIKAYGLN---YSLMPSSG 173
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
A +++ R N P V W PH + + + +L +++ G E V +VV
Sbjct: 174 SAMTAELARSIHANKPVVVTGWAPHWMFAKWKLRFLDDPKKVYGEAE-HVDSVVNPALET 232
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
K + LK ++ + +M I N + H D + W+
Sbjct: 233 KAKPVVAFLKKFQWKPGEIDGVMLAI-QNGSKPAAAADAWIAAHGDRVGEWV 283
>gi|161520105|ref|YP_001583532.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia multivorans ATCC 17616]
gi|189353716|ref|YP_001949343.1| glycine betaine/proline transport system substrate-binding protein
[Burkholderia multivorans ATCC 17616]
gi|221200348|ref|ZP_03573390.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia multivorans CGD2M]
gi|221206027|ref|ZP_03579041.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia multivorans CGD2]
gi|160344155|gb|ABX17240.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia multivorans ATCC 17616]
gi|189337738|dbj|BAG46807.1| glycine betaine/proline transport system substrate-binding protein
[Burkholderia multivorans ATCC 17616]
gi|221174039|gb|EEE06472.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia multivorans CGD2]
gi|221179689|gb|EEE12094.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia multivorans CGD2M]
Length = 287
Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats.
Identities = 63/296 (21%), Positives = 117/296 (39%), Gaps = 13/296 (4%)
Query: 1 MY---KILAVCLFLTTFSISYARDADSCTPVRFADT-GWTDIAATTAMTSVILEEILGYK 56
M K+L ++S + AD+ ++ GW D AT+ + + ++E+ LGY+
Sbjct: 1 MKLLGKLLWTGALSAMVALSASALADTKPTLKIGYVEGWDDSVATSNVAARVIEKKLGYQ 60
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ +A + ++ + +D + W P + + V N AK L V
Sbjct: 61 VQLVPVAAGIMWQGVARGDLDATLSAWLPVTHGSYWSEY-KSKVVDVGANFPDAKIGLIV 119
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
D A KS +D+ K G +I GI+ G ++ + I N + L+ +S
Sbjct: 120 PDYVKA---KSIEDLNAEKSSFGGRIVGIDAGAGVMRKTDEAIKNYGL---SYTLMPSSG 173
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
A +++ R N P + W PH + + + +L +++ G G V +VV
Sbjct: 174 SAMTAELSRSVSANKPVIVTGWAPHWMFAKWKLRFLEDPKKVFG-GAEHVDSVVNPQLET 232
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVT 292
K + LK ++ + +M I N + + H D + W G
Sbjct: 233 KAKPVVAFLKKFQWKPGEIDSVMLAI-QNGAKPEAAADAWIAAHADRVNAWTEGAQ 287
>gi|221209382|ref|ZP_03582363.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia multivorans CGD1]
gi|221170070|gb|EEE02536.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia multivorans CGD1]
Length = 287
Score = 158 bits (400), Expect = 8e-37, Method: Composition-based stats.
Identities = 64/296 (21%), Positives = 118/296 (39%), Gaps = 13/296 (4%)
Query: 1 MY---KILAVCLFLTTFSISYARDADSCTPVRFADT-GWTDIAATTAMTSVILEEILGYK 56
M K+L ++S + AD+ ++ GW D AT+ + + ++E+ LGY+
Sbjct: 1 MKLLGKLLWTGALSAMVALSASALADTKPTLKIGYVEGWDDSVATSNVAARVIEKKLGYQ 60
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ +A + ++ + +D + W P +G + V N AK L V
Sbjct: 61 VQLVPVAAGIMWQGVARGDLDATLSAWLPVTHGSYWSEY-KGKVVDVGANFPDAKIGLIV 119
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
D A KS +D+ K G +I GI+ G ++ + I N + L+ +S
Sbjct: 120 PDYVKA---KSIEDLNAEKSSFGGRIVGIDAGAGVMRKTDEAIKNYGL---SYTLMPSSG 173
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
A +++ R N P + W PH + + + +L +++ G G V +VV
Sbjct: 174 SAMTAELSRSVSANKPVIVTGWAPHWMFAKWKLRFLEDPKKVFG-GAEHVDSVVNPQLET 232
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVT 292
K + LK ++ + +M I N + + H D + W G
Sbjct: 233 KAKPVVAFLKKFQWKPGEIDSVMLAI-QNGAKPEAAADAWIAAHADRVNAWTEGAQ 287
>gi|28868806|ref|NP_791425.1| ABC transporter periplasmic substrate-binding protein [Pseudomonas
syringae pv. tomato str. DC3000]
gi|28852045|gb|AAO55120.1| ABC transporter, periplasmic substrate-binding protein, putative
[Pseudomonas syringae pv. tomato str. DC3000]
Length = 337
Score = 158 bits (400), Expect = 8e-37, Method: Composition-based stats.
Identities = 51/340 (15%), Positives = 110/340 (32%), Gaps = 43/340 (12%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL 62
++L+ L + + A A+ P++F W + T + I+E+ GY T+
Sbjct: 6 RLLSCSLLALGLASAPAMSAEKARPIQFGALTWESGSLITEVLRTIVEKGYGYPTDTLPG 65
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG-- 120
+ +L I + W EG + + + ++ A V +
Sbjct: 66 STVSLETALAKNDIQVIAEEW-TGRSPVWVKAEAEGKVLGLGDIVKHADEGWWVPEYVIK 124
Query: 121 ---------FALGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNNKF 164
A +K+ +D+A+YK + G +
Sbjct: 125 GDAAKGIKPMAPELKTVEDLARYKDVFKDPESPEKGRFLNSPSGWTSEIVNTQKLKAYGL 184
Query: 165 SLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG-EEISGFG- 222
+ S A +++ R P +F W P P+ L + +
Sbjct: 185 NDSFVNFRTGSGAALDAEVAAAIRLGKPVLFYYWSPTPLLGTYKFIKLQEPAFDAEAWKT 244
Query: 223 ---------------EASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQ 267
A++ V +++ + P + + K + F + L N+ + + +
Sbjct: 245 LTDASNPNPRGTSSLAATLSIGVSAEFSKQYPELVSVFKQVDFPIGLLNQTLSDMSKKHE 304
Query: 268 DRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
D + L+ +PD+ K WL D + ++ +
Sbjct: 305 DPKVAATRFLKQNPDVWKTWLP-------ADVASRVSAAL 337
>gi|88807959|ref|ZP_01123470.1| ABC transporter binding protein, glycine betaine/proline family
protein [Synechococcus sp. WH 7805]
gi|88787998|gb|EAR19154.1| ABC transporter binding protein, glycine betaine/proline family
protein [Synechococcus sp. WH 7805]
Length = 322
Score = 158 bits (400), Expect = 9e-37, Method: Composition-based stats.
Identities = 41/273 (15%), Positives = 102/273 (37%), Gaps = 9/273 (3%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
A + +P+R + W D + + ++++ + L + + + S+ +D+
Sbjct: 52 TSALTGSPLRLGWSPWADAEVISLIAQKVIQQAYNIEVERVLADIGIQYASVARGDLDMM 111
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKY--KKE 137
+ W P + + + + G + V D + S Q +
Sbjct: 112 LMAWLPLTHRDYWQRVRD-RVLDFGSMYSG-RLGWVVPDYIPKAELSSIQQLRDPALAAR 169
Query: 138 LGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLS 197
++ GI+PG+ NQ + + + + + L+ +S A + + + R + S
Sbjct: 170 FQNRVQGIDPGSGLNQASAEALKSYQLND--LDLVASSSAAMTAVLDQAIRREQWVIVTS 227
Query: 198 WEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENE 257
W PH + + + +L + + G G ++ + R P+++ L ++
Sbjct: 228 WMPHWMFARYKLRFLEDPKRVFG-GIERIHALGRPSLDLDAPDLADFLTRFHLPDQEMSD 286
Query: 258 MMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIG 290
++ + + + L THP ++ W G
Sbjct: 287 LLLKAND--RSAEIAVDEYLDTHPARVRYWTTG 317
>gi|171315426|ref|ZP_02904663.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia ambifaria MEX-5]
gi|171099426|gb|EDT44161.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia ambifaria MEX-5]
Length = 287
Score = 158 bits (399), Expect = 9e-37, Method: Composition-based stats.
Identities = 61/294 (20%), Positives = 116/294 (39%), Gaps = 13/294 (4%)
Query: 1 MY---KILAVCLFLTTFSISYARDADSCTPVRFADT-GWTDIAATTAMTSVILEEILGYK 56
M K+L ++S + AD+ ++ GW D AT+ + + ++E+ LGY+
Sbjct: 1 MKLFGKLLWTGAVSAMVALSASALADTKPTLKIGYVEGWDDSVATSNVAARVIEKKLGYE 60
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ +A + ++ + +D + W P + + V N AK L V
Sbjct: 61 VKLVPVAAGIMWQGVARGDLDATLSAWLPVTHGSYWDEY-KAKVVDVGANFPDAKIGLIV 119
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
A KS D+ K G +I GI+ G ++ + I + + L+ +S
Sbjct: 120 PAYVKA---KSIDDLNAEKSSFGGRIVGIDAGAGVMRKTDEAIKSYGL---SYTLMPSSG 173
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
A +++ R N P + W PH + + + +L +++ G G V +VV
Sbjct: 174 SAMTAELSRSVSANKPVIVTGWAPHWMFAKWKLRFLEDPKKVFG-GAEHVDSVVNPQLET 232
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIG 290
K + LK ++ + +M I N + + H D + +W G
Sbjct: 233 KAKPVVAFLKKFQWKPGEIDSVMLAI-QNGSKPEAAADAWIAAHADRVNSWTEG 285
>gi|124381195|ref|YP_001024800.1| quaternary amine ABC transporter periplasmic substrate-binding
protein [Burkholderia mallei NCTC 10229]
gi|167002661|ref|ZP_02268451.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
mallei PRL-20]
gi|254355809|ref|ZP_04972088.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
mallei 2002721280]
gi|124289215|gb|ABM98484.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
mallei NCTC 10229]
gi|148024780|gb|EDK82963.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
mallei 2002721280]
gi|243061706|gb|EES43892.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
mallei PRL-20]
Length = 297
Score = 158 bits (399), Expect = 9e-37, Method: Composition-based stats.
Identities = 88/284 (30%), Positives = 139/284 (48%), Gaps = 47/284 (16%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWY 84
C VR A GWTDI AT A+ V+L+ LGY+ ++ L+VP+T++ LK +D+F+G W
Sbjct: 59 CRDVRMAGPGWTDIEATNALAGVVLKA-LGYRQSVSNLSVPITYQGLKKGQLDVFLGNWM 117
Query: 85 PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYG 144
P+ + P+++ +I ++ NL AK+ LAV D A G+ S+ D+AKY + GAKIYG
Sbjct: 118 PAQAPLVKPFVDARAIDVLHANLSHAKFTLAVPDYVAAAGVHSFADLAKYAQRFGAKIYG 177
Query: 145 IEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPIN 204
IEPG NQ I M+ + ++L+E+SE +Q+ R
Sbjct: 178 IEPGAPANQNISRMLADKALGPANWQLVESSETGMLTQVERA------------------ 219
Query: 205 SDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILN 264
D+ +C N++RL + + F+V LEN M+ +L
Sbjct: 220 ----------------------------DFASQCANLARLFRQMTFTVDLENGMIAAMLQ 251
Query: 265 NKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
K+ + LR +P L++ WL GV T G + ++
Sbjct: 252 GKRSAVDAAQHALRANPSLVEAWLDGVRTASGAPGLPAVRAALD 295
>gi|33597863|ref|NP_885506.1| putative solute-binding periplasmic protein [Bordetella
parapertussis 12822]
gi|33574292|emb|CAE38625.1| putative solute-binding periplasmic protein [Bordetella
parapertussis]
Length = 332
Score = 158 bits (399), Expect = 9e-37, Method: Composition-based stats.
Identities = 45/318 (14%), Positives = 89/318 (27%), Gaps = 34/318 (10%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKG 75
A + PVRF+ W + ILE+ G KT +++ +L+
Sbjct: 23 APSASACEIDRPVRFSGLNWESNLVMVGIQRFILEKGYGCKTAMEIGETLPMLAALQRGD 82
Query: 76 IDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIK--------- 126
+D+ W +E L G + V A V
Sbjct: 83 VDVTPEVWPGQIEGAWKKALASGKVLGVGHVFT-AGEGWYVPRYTVERHPDLRQAADLQR 141
Query: 127 SYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRD 186
+ +IYG G +++ + S A + I
Sbjct: 142 YKSTFTDPEDPAKGRIYGCPAGWACGTLNENLLKALQLEHDYNLFAPGSGAAQKAAIMSA 201
Query: 187 QRNNIPAVFLSWEPHPINSDLN-------------IHYLPGGEEISGFG----EASVYTV 229
+ VF W P + L+ + V T
Sbjct: 202 YKRKRDIVFYYWTPTALVGALDLVKLQLPAFDQAAYTCMTDPRCAKPVPTEFKPNPVVTG 261
Query: 230 VRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+ +D+ + P + R + + + + N K + LR + ++ K W+
Sbjct: 262 LNADFARQAPALHRFFEALTVPDEAIGATLGWLENEKAEADDAALYFLRQYGEIWKKWVP 321
Query: 290 GVTTFDGQDPSRQLERFM 307
D +++++ +
Sbjct: 322 -------ADVAQRVQAAL 332
>gi|187935334|ref|YP_001887112.1| glycine betaine/carnitine/choline transport system permease protein
opucb [Clostridium botulinum B str. Eklund 17B]
gi|187723487|gb|ACD24708.1| glycine betaine/carnitine/choline transport system permease protein
opucb [Clostridium botulinum B str. Eklund 17B]
Length = 523
Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats.
Identities = 48/297 (16%), Positives = 102/297 (34%), Gaps = 31/297 (10%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--L 62
L C+ L F I+ ++ + +T+ + S +E+ K
Sbjct: 234 LTACIILGIFVITNISTNNNSKTITIGSKDYTEQEILCNIFSEAIEQNTDISVKRKSALG 293
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIA----------------PYLEEGSIKLVAEN 106
+ F +LK+ ID+++ Y + + ++ +I+++ +
Sbjct: 294 GTQICFSALKSGDIDMYVDYSGTCYGDTLKYTPISDVEKIYDTVKTDFKDKFNIEVLNQM 353
Query: 107 LQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFS 165
Y LAV +K+ DIAK EL I I+ + F+
Sbjct: 354 GFNNTYTLAVKKETAEKYNLKTISDIAKVGDEL--TISPCLEFLNREDGIIGLKKTYNFN 411
Query: 166 LKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEAS 225
K I+ S NN V ++ + ++ L +
Sbjct: 412 FKNEIGIDGSPK------YTALMNNESDVIDAFSTDGLLKKFDLTVLEDDKNFF--PPYY 463
Query: 226 VYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+VR + L+K P I+ +++ I + + ++ + ++D + V R L+ +
Sbjct: 464 AIPLVRGETLEKYPEITPIIEEIAPLLTNEVMMDLNYQVDELRKDPKDVAREFLQEN 520
>gi|188589170|ref|YP_001922048.1| glycine betaine/carnitine/choline transport system permease protein
opucb [Clostridium botulinum E3 str. Alaska E43]
gi|188499451|gb|ACD52587.1| glycine betaine/carnitine/choline transport system permease protein
opucb [Clostridium botulinum E3 str. Alaska E43]
Length = 523
Score = 158 bits (398), Expect = 1e-36, Method: Composition-based stats.
Identities = 47/297 (15%), Positives = 101/297 (34%), Gaps = 31/297 (10%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--L 62
L C+ L F I+ + + +T+ + S +E+ K
Sbjct: 234 LTACIILGIFVITNISTNSNSKTITIGSKDFTEQEILCNIFSEAIEQNTDISVKRKSALG 293
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIA----------------PYLEEGSIKLVAEN 106
+ F +LK+ ID+++ Y + + ++ +I+++ +
Sbjct: 294 GTQICFSALKSGDIDMYVDYSGTCYGDTLKYSPISDVEKIYDTVKTDFKDKFNIEVLNQM 353
Query: 107 LQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFS 165
Y LAV +K+ DIAK EL I I+ + F+
Sbjct: 354 GFNNTYTLAVKKDTAEKYNLKTISDIAKVGDEL--TISPCLEFLNREDGIIGLKKTYNFN 411
Query: 166 LKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEAS 225
K I+ S NN V ++ + ++ L +
Sbjct: 412 FKNEIGIDGSPK------YTALMNNESDVIDAFSTDGLLKKFDLTVLEDDKNFF--PPYY 463
Query: 226 VYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+V+ + L+K P I+ +++ I + + ++ + ++D + V R L+ +
Sbjct: 464 AIPLVKGETLEKYPEIAPIIEEIAPLLTNEVMIDLNYQVDELRKDPKDVAREFLQEN 520
>gi|76818545|ref|YP_337268.1| ABC transporter periplasmic glycine/betaine-binding protein
[Burkholderia pseudomallei 1710b]
gi|167741659|ref|ZP_02414433.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 14]
gi|237508489|ref|ZP_04521204.1| ABC transporter, quaternary amine uptake transporter [Burkholderia
pseudomallei MSHR346]
gi|254182313|ref|ZP_04888908.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 1655]
gi|254263114|ref|ZP_04953979.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 1710a]
gi|254299817|ref|ZP_04967265.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 406e]
gi|76583018|gb|ABA52492.1| ABC transporter, periplasmic glycine/betaine-binding protein
[Burkholderia pseudomallei 1710b]
gi|157809706|gb|EDO86876.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 406e]
gi|184212849|gb|EDU09892.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 1655]
gi|235000694|gb|EEP50118.1| ABC transporter, quaternary amine uptake transporter [Burkholderia
pseudomallei MSHR346]
gi|254214116|gb|EET03501.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 1710a]
Length = 287
Score = 158 bits (398), Expect = 1e-36, Method: Composition-based stats.
Identities = 58/292 (19%), Positives = 108/292 (36%), Gaps = 13/292 (4%)
Query: 1 MY---KILAVCLFLTTFSISYARDADSCTPVRFADT-GWTDIAATTAMTSVILEEILGYK 56
M K++ + + AD+ ++ GW D AT+ + + I+E LGY
Sbjct: 1 MKFLTKLIGCGVLAMMLAAVAPAQADTKPTLKIGYVEGWDDSVATSNVAARIIETKLGYP 60
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ +A V ++ + +D + W P + + + + N AK L V
Sbjct: 61 VQLVPVAAGVMWQGVARGDLDATLSAWLPVTQGAYWE-QFKTKVVNLGTNFPDAKIGLIV 119
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
A I + K + +I GI+ G ++ D I + + L+ +S
Sbjct: 120 PAYVKAKTIAD---LNAQKNDFAGRIVGIDAGAGVMRKTDDAIKAYGLN---YSLMPSSG 173
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
A +++ R +N V W PH + + + +L +++ G E V VV
Sbjct: 174 SAMTAELARSIHSNKAVVVTGWAPHWMFAKWKLRFLDDPKKVYGEAE-HVDNVVNPALET 232
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
K + LK ++ + +M I N + H D + WL
Sbjct: 233 KAQPVVAFLKKFQWKPGEIDGVMLAI-QNGSKPAAAADAWIAAHGDRVGEWL 283
>gi|19705305|ref|NP_602800.1| glycine betaine transport system permease protein [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
gi|19713272|gb|AAL94099.1| Glycine betaine transport system permease protein [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
Length = 513
Score = 158 bits (398), Expect = 1e-36, Method: Composition-based stats.
Identities = 39/298 (13%), Positives = 96/298 (32%), Gaps = 31/298 (10%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL- 61
K++ + LF+ F ++ ++ + A T+ M + ++E+ K NI
Sbjct: 219 KVIILGLFIVIFGAYFSLNSKKDKTINIATKPMTEGYILGQMLTELIEQDTDLKVNITNG 278
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP---------------YLEEGSIKLVA 104
++ D++ Y S E + Y E+ +++ +
Sbjct: 279 VGGGTSNIHPAIVKGEFDLYPEYTGTSWETVLKKEGSYDESKFDELQKEYKEKYNLEYIN 338
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNK 163
Y LAVN + + + K I+G E E ++
Sbjct: 339 LYGFNNTYGLAVNKDIAKKY--NLKTYSDLAKASNNLIFGAEYDFFEREDGYKELQKVYN 396
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+ + + ++ V + + + ++ L ++ +
Sbjct: 397 MNF------KKQIDMDIGLKYQAMKDKKIDVMVIFTTDGQLAISDVVVLEDDKK--MYPS 448
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
TV+RS+ L + P + +L+ + ++ + + + + V R L+
Sbjct: 449 YRAGTVIRSEILSEYPELKPVLEKLNNILDDKTMADLNYQVESEGKKPEDVAREYLQE 506
>gi|257484600|ref|ZP_05638641.1| histidine transporter, periplasmic histidine-binding protein
[Pseudomonas syringae pv. tabaci ATCC 11528]
gi|331008116|gb|EGH88173.1| histidine transporter, periplasmic histidine-binding protein
[Pseudomonas syringae pv. tabaci ATCC 11528]
Length = 322
Score = 158 bits (398), Expect = 1e-36, Method: Composition-based stats.
Identities = 43/330 (13%), Positives = 100/330 (30%), Gaps = 33/330 (10%)
Query: 1 MYKILAVCLFLTTFSISYARD-----ADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
+ K L L A +S PV+FA W T + ++L++ G
Sbjct: 3 IRKNLTATLIALGLFAGSAASQAAGWCESGKPVKFAGLNWESGMLLTDILQILLKDGYGC 62
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
+ +L N I + W + G + V + GA
Sbjct: 63 AIDTLPGNSITMESALSNNDIQVLAEEWI-GRSEVWNKASASGKVVGVGAPIIGATEGWY 121
Query: 116 VNDVGFALGIKSYQD------------------IAKYKKELGAKIYGIEPGNEGNQRILD 157
V K ++ + Y G +
Sbjct: 122 VPRYLVEGDAKRNLKPKAPDLKKIADLTQYVALFKDPEEPDKGRFYNCPAGWTCELENSE 181
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
M+ + + A + + + P +F W P P+ +++ L
Sbjct: 182 MLKSYGLEASYTNFRPGTGPALDAAVLSSYKRGEPILFYYWSPTPLMGQVDLLKLEEKPG 241
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTML 277
+ + S+ + + + ++ P + +L+ + + L N+ + + + D + +
Sbjct: 242 VDK--KISIQVGLSNVFHEQAPELVAVLEKVNLPIDLLNQNLARMSKERIDSPKLAKIFF 299
Query: 278 RTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ HP++ W+ ++++E +
Sbjct: 300 KEHPEIWHTWVSDA-------AAKKIEATL 322
>gi|255264708|ref|ZP_05344050.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Thalassiobium sp. R2A62]
gi|255107043|gb|EET49717.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Thalassiobium sp. R2A62]
Length = 316
Score = 158 bits (398), Expect = 1e-36, Method: Composition-based stats.
Identities = 45/317 (14%), Positives = 91/317 (28%), Gaps = 29/317 (9%)
Query: 1 MYKILAVCLFLTTFSISYA----RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
M K A DS P+ W+ + + ILEE G
Sbjct: 1 MKKFTTALTAGVLAIAPIAAMAAGHGDSDDPIVIPIHNWSSQIVMSNVVGQILEEA-GNN 59
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ S++ + + + W + LE+G I V ++ +
Sbjct: 60 VEYVTTDSQAVYESVRLGDVTLELEVWEGAFGASFRAALEKGGIVDVGDHNAVTREDWWY 119
Query: 117 NDVG--FALGIKSYQDIAKYKKELGAKIYGIEPGN---EGNQRILDMINNNKFSLKGFRL 171
G+ S++ + G + + + +
Sbjct: 120 PMWTKDACPGLPSWEALNDCAALFATPETGDKGRYLDGPVDWLKHGQERVAALDMNFVVV 179
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG---------------- 215
S A +++I + + P V +W P+ + ++
Sbjct: 180 NAGSAAALWAEIGAAEADKRPVVVFNWTPNFAEAVWPGEFVEFPAWEDGCDKDPAVGPNP 239
Query: 216 ---EEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
+ + +K PN +L+NI F+ EM KL+ ++ + +
Sbjct: 240 DALYDCGNPATGYLKKAAWDGMEEKWPNAYGILENISFTNPQIAEMAKLVDIDELEPEDA 299
Query: 273 GRTMLRTHPDLLKNWLI 289
L + D+ K WL
Sbjct: 300 AAEWLEANEDVWKTWLN 316
>gi|319779829|ref|YP_004139305.1| substrate-binding region of ABC-type glycine betaine transport
system [Mesorhizobium ciceri biovar biserrulae WSM1271]
gi|317165717|gb|ADV09255.1| Substrate-binding region of ABC-type glycine betaine transport
system [Mesorhizobium ciceri biovar biserrulae WSM1271]
Length = 334
Score = 158 bits (398), Expect = 1e-36, Method: Composition-based stats.
Identities = 47/342 (13%), Positives = 97/342 (28%), Gaps = 43/342 (12%)
Query: 1 MYKI--LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M + A CL + A A +C + + W ++ IL+ G
Sbjct: 1 MKNLPLAAACLTILVLESLPANAASNCGELTISSMNWQSAEVLASLDKFILKAGFGCDAE 60
Query: 59 IKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAV 116
I P ++ D+ W L +A ++ G + L G +
Sbjct: 61 ILEGDTVPTVTSMIEKGKPDVAPEIWVDLLPDVVATGIKLGKLVETGAALKDGGVNGWWI 120
Query: 117 NDVGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
+K + + ++ G +
Sbjct: 121 PKYVSEAHPDIKTIADALKHPELFPAPEDSSKGAVFNGPQGWGATVVTTQLFKAYGAEKA 180
Query: 168 GFRLIE-ASELASFSQIRRDQRNNIPAVFLSWEPHPI-------------------NSDL 207
GF LI+ S I + + + W P I
Sbjct: 181 GFTLIDTGSAAGLDGSIAKSYERHQGWLGFYWAPTSILGKYEMVKLDFGVPYNQAEWKRC 240
Query: 208 NIHYLPGGEEISGFGEASVYTVVRSDYLDK-CPNISRLLKNIKFSVALENEMMKLILNNK 266
N + + + + V T+V + D+ P + L+ +S N ++ + +N+
Sbjct: 241 NTVADCADPKPNVWPQDRVKTIVTKGFSDRTDPAVMEYLQTRSWSNDTVNGLLTWMTDNQ 300
Query: 267 QDRQFVGRTMLRTHPDLLKNWLI-GVTTFDGQDPSRQLERFM 307
+ L+T D+ W+ GV + +++ +
Sbjct: 301 ATGDDAAKYFLKTREDIWAKWVPVGV--------AGKIKAAL 334
>gi|301383362|ref|ZP_07231780.1| ABC transporter, periplasmic substrate-binding protein, putative
[Pseudomonas syringae pv. tomato Max13]
gi|302058806|ref|ZP_07250347.1| ABC transporter, periplasmic substrate-binding protein, putative
[Pseudomonas syringae pv. tomato K40]
gi|302134495|ref|ZP_07260485.1| ABC transporter, periplasmic substrate-binding protein, putative
[Pseudomonas syringae pv. tomato NCPPB 1108]
Length = 337
Score = 158 bits (398), Expect = 1e-36, Method: Composition-based stats.
Identities = 51/340 (15%), Positives = 110/340 (32%), Gaps = 43/340 (12%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL 62
++L+ L + + A A+ P++F W + T + I+E+ GY T+
Sbjct: 6 RLLSCSLLALGLASAPAMSAEKARPIQFGALTWESGSLITEVLRAIVEKGYGYPTDTLPG 65
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG-- 120
+ +L I + W EG + + + ++ A V +
Sbjct: 66 STVSLETALAKNDIQVIAEEWA-GRSPVWVKAEAEGKVLGLGDIVKHADEGWWVPEYVIK 124
Query: 121 ---------FALGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNNKF 164
A +K+ +D+A+YK + G +
Sbjct: 125 GDAAKGIKPMAPELKTVEDLARYKDVFKDPESPEKGRFLNSPSGWTSEIVNTQKLKAYGL 184
Query: 165 SLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG-EEISGFG- 222
+ S A +++ R P +F W P P+ L + +
Sbjct: 185 NDSFVNFRTGSGAALDAEVAAAIRLGKPVLFYYWSPTPLLGTYKFIKLQEPAFDAEAWKT 244
Query: 223 ---------------EASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQ 267
A++ V +++ + P + + K + F + L N+ + + +
Sbjct: 245 LTDASNPNPRGTSSLAATLSIGVSAEFSKQYPELVSVFKQVDFPIGLLNQTLSDMSKKHE 304
Query: 268 DRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
D + L+ +PD+ K WL D + ++ +
Sbjct: 305 DPKVAATRFLKQNPDVWKTWLP-------ADVASRVSAAL 337
>gi|237742950|ref|ZP_04573431.1| glycine betaine transport system permease [Fusobacterium sp.
4_1_13]
gi|229430598|gb|EEO40810.1| glycine betaine transport system permease [Fusobacterium sp.
4_1_13]
Length = 513
Score = 158 bits (398), Expect = 1e-36, Method: Composition-based stats.
Identities = 40/298 (13%), Positives = 97/298 (32%), Gaps = 31/298 (10%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL- 61
K++ + LF+ F + ++ ++ + A T+ M + ++E+ K NI
Sbjct: 219 KVIILGLFIVIFGVYFSLNSKKDKTINIATKPMTEGYILGQMLTELIEQDTDLKVNITNG 278
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP---------------YLEEGSIKLVA 104
++ D++ Y S E + Y E+ +++ V
Sbjct: 279 VGGGTSNIHPAIVKGEFDLYPEYTGTSWEAVLKKEGSYDESKFDELQKEYKEKYNLEYVN 338
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNK 163
Y LAVN + + + K I+G E E ++
Sbjct: 339 LYGFNNTYGLAVNKDIAKKY--NLKTYSDLAKVSNNLIFGAEYDFFEREDGYKELQKVYN 396
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+ + + ++ V + + + ++ L ++ +
Sbjct: 397 MNF------KKQIDMDIGLKYQAMKDKKIDVMVIFTTDGQLAISDVVVLEDDKK--MYPS 448
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
TV+RS+ L + P + +L+ + ++ + + + + V R L+
Sbjct: 449 YRAGTVIRSEILSEYPELKPVLEKLNNILDDKTMADLNYQVESEGKKPEDVAREYLQE 506
>gi|121597292|ref|YP_990301.1| quaternary amine ABC transporter periplasmic substrate-binding
protein [Burkholderia mallei SAVP1]
gi|126447171|ref|YP_001079141.1| quaternary amine ABC transporter periplasmic substrate-binding
protein [Burkholderia mallei NCTC 10247]
gi|121225090|gb|ABM48621.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
mallei SAVP1]
gi|126240025|gb|ABO03137.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
mallei NCTC 10247]
Length = 288
Score = 158 bits (398), Expect = 1e-36, Method: Composition-based stats.
Identities = 88/284 (30%), Positives = 139/284 (48%), Gaps = 47/284 (16%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWY 84
C VR A GWTDI AT A+ V+L+ LGY+ ++ L+VP+T++ LK +D+F+G W
Sbjct: 50 CRDVRMAGPGWTDIEATNALAGVVLKA-LGYRQSVSNLSVPITYQGLKKGQLDVFLGNWM 108
Query: 85 PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYG 144
P+ + P+++ +I ++ NL AK+ LAV D A G+ S+ D+AKY + GAKIYG
Sbjct: 109 PAQAPLVKPFVDARAIDVLHANLSHAKFTLAVPDYVAAAGVHSFADLAKYAQRFGAKIYG 168
Query: 145 IEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPIN 204
IEPG NQ I M+ + ++L+E+SE +Q+ R
Sbjct: 169 IEPGAPANQNISRMLADKALGPANWQLVESSETGMLTQVERA------------------ 210
Query: 205 SDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILN 264
D+ +C N++RL + + F+V LEN M+ +L
Sbjct: 211 ----------------------------DFASQCANLARLFRQMTFTVDLENGMIAAMLQ 242
Query: 265 NKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
K+ + LR +P L++ WL GV T G + ++
Sbjct: 243 GKRSAVDAAQHALRANPSLVEAWLDGVRTASGAPGLPAVRAALD 286
>gi|53717109|ref|YP_105252.1| ABC transporter, periplasmic glycine/betaine-binding protein
[Burkholderia mallei ATCC 23344]
gi|53721592|ref|YP_110577.1| hypothetical protein BPSS0556 [Burkholderia pseudomallei K96243]
gi|67640451|ref|ZP_00439257.1| ABC transporter, quaternary amine uptake transporter [Burkholderia
mallei GB8 horse 4]
gi|121598022|ref|YP_990306.1| quaternary amine ABC transporter periplasmic substrate-binding
protein [Burkholderia mallei SAVP1]
gi|124381642|ref|YP_001024805.1| quaternary amine ABC transporter periplasmic substrate-binding
protein [Burkholderia mallei NCTC 10229]
gi|126444469|ref|YP_001061836.1| quaternary amine ABC transporter periplasmic substrate-binding
protein [Burkholderia pseudomallei 668]
gi|126446876|ref|YP_001079146.1| quaternary amine ABC transporter periplasmic substrate-binding
protein [Burkholderia mallei NCTC 10247]
gi|126457885|ref|YP_001074785.1| quaternary amine ABC transporter periplasmic substrate-binding
protein [Burkholderia pseudomallei 1106a]
gi|134284180|ref|ZP_01770873.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 305]
gi|167002656|ref|ZP_02268446.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
mallei PRL-20]
gi|167722691|ref|ZP_02405927.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei DM98]
gi|167818851|ref|ZP_02450531.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 91]
gi|167827225|ref|ZP_02458696.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 9]
gi|167848717|ref|ZP_02474225.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei B7210]
gi|167897310|ref|ZP_02484712.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 7894]
gi|167905671|ref|ZP_02492876.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei NCTC 13177]
gi|167913975|ref|ZP_02501066.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 112]
gi|167921889|ref|ZP_02508980.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei BCC215]
gi|217425557|ref|ZP_03457050.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 576]
gi|226194900|ref|ZP_03790491.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei Pakistan 9]
gi|242311011|ref|ZP_04810028.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 1106b]
gi|254175850|ref|ZP_04882509.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
mallei ATCC 10399]
gi|254187376|ref|ZP_04893889.1| OpuABC [Burkholderia pseudomallei Pasteur 52237]
gi|254198724|ref|ZP_04905144.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei S13]
gi|254203214|ref|ZP_04909576.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
mallei FMH]
gi|254208549|ref|ZP_04914898.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
mallei JHU]
gi|254355812|ref|ZP_04972091.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
mallei 2002721280]
gi|52212006|emb|CAH38013.1| putative exported protein [Burkholderia pseudomallei K96243]
gi|52423079|gb|AAU46649.1| ABC transporter, periplasmic glycine/betaine-binding protein
[Burkholderia mallei ATCC 23344]
gi|121225820|gb|ABM49351.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
mallei SAVP1]
gi|124289662|gb|ABM98931.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
mallei NCTC 10229]
gi|126223960|gb|ABN87465.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 668]
gi|126231653|gb|ABN95066.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 1106a]
gi|126239730|gb|ABO02842.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
mallei NCTC 10247]
gi|134244498|gb|EBA44603.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 305]
gi|147746259|gb|EDK53337.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
mallei FMH]
gi|147751236|gb|EDK58304.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
mallei JHU]
gi|148024783|gb|EDK82966.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
mallei 2002721280]
gi|157935057|gb|EDO90727.1| OpuABC [Burkholderia pseudomallei Pasteur 52237]
gi|160696893|gb|EDP86863.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
mallei ATCC 10399]
gi|169655463|gb|EDS88156.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei S13]
gi|217391520|gb|EEC31549.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 576]
gi|225932705|gb|EEH28701.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei Pakistan 9]
gi|238521167|gb|EEP84621.1| ABC transporter, quaternary amine uptake transporter [Burkholderia
mallei GB8 horse 4]
gi|242134250|gb|EES20653.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
pseudomallei 1106b]
gi|243061701|gb|EES43887.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
mallei PRL-20]
Length = 287
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 58/292 (19%), Positives = 108/292 (36%), Gaps = 13/292 (4%)
Query: 1 MY---KILAVCLFLTTFSISYARDADSCTPVRFADT-GWTDIAATTAMTSVILEEILGYK 56
M K++ + + AD+ ++ GW D AT+ + + I+E LGY
Sbjct: 1 MKFLTKLIGCGVLAMMLAAVAPTQADTKPTLKIGYVEGWDDSVATSNVAARIIETKLGYP 60
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ +A V ++ + +D + W P + + + + N AK L V
Sbjct: 61 VQLVPVAAGVMWQGVARGDLDATLSAWLPVTQGAYWE-QFKTKVVNLGTNFPDAKIGLIV 119
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
A I + K + +I GI+ G ++ D I + + L+ +S
Sbjct: 120 PAYVKAKTIAD---LNAQKNDFAGRIVGIDAGAGVMRKTDDAIKAYGLN---YSLMPSSG 173
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
A +++ R +N V W PH + + + +L +++ G E V VV
Sbjct: 174 SAMTAELARSIHSNKAVVVTGWAPHWMFAKWKLRFLDDPKKVYGEAE-HVDNVVNPALET 232
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
K + LK ++ + +M I N + H D + WL
Sbjct: 233 KAQPVVAFLKKFQWKPGEIDGVMLAI-QNGSKPAAAADAWIAAHGDRVGEWL 283
>gi|108805375|ref|YP_645312.1| substrate-binding region of ABC-type glycine betaine transport
system [Rubrobacter xylanophilus DSM 9941]
gi|108766618|gb|ABG05500.1| Substrate-binding region of ABC-type glycine betaine transport
system [Rubrobacter xylanophilus DSM 9941]
Length = 301
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 65/271 (23%), Positives = 121/271 (44%), Gaps = 14/271 (5%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEILGY-KTNIKLLAVPVTFRSLKNKGIDIFMGYWYP 85
+ GWT+ A + +T V+LEE LGY K ++ L + F+ + +D F W P
Sbjct: 36 ELTLGTIGWTENVAVSNLTKVLLEEELGYEKVELQTLDLGPLFKGVATGDLDAFQDVWLP 95
Query: 86 SLEKFIAPYLEEGSIKLVAENLQG-AKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYG 144
+ ++ E ++L+ +G KY +A D + + + ++ +I G
Sbjct: 96 NNRNYLNE--VEEDVELLKPWYKGETKYGIAALDYM------NIDSLTELERAGTNEIVG 147
Query: 145 IEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPIN 204
IEPG + +I +++ ++ L+ F+L+E+S A + + N P +FL+W PH +N
Sbjct: 148 IEPGASFHPQIRNVVF-KEYGLENFKLVESSTAAMLAAVEEASSNKEPILFLAWSPHWMN 206
Query: 205 SDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI 262
+I YL ++ + + TVV D D+ P LK + + N + I
Sbjct: 207 EVYDIVYLKDPKDAQGKFNDSSRITTVVNEDLSDEEPVAYAFLKAVSLNEEQLNSLELEI 266
Query: 263 LNNKQD-RQFVGRTMLRTHPDLLKNWLIGVT 292
QD + L + D+++ W+
Sbjct: 267 KRAGQDEPVKGVKNWLEKNRDVVRPWVQAAK 297
>gi|331017343|gb|EGH97399.1| ABC transporter, periplasmic substrate-binding protein, putative
[Pseudomonas syringae pv. lachrymans str. M302278PT]
Length = 337
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 51/340 (15%), Positives = 111/340 (32%), Gaps = 43/340 (12%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL 62
++L+ L + + A A+ P++F W + T + I+E+ GY T+
Sbjct: 6 RLLSCSLLALGLASAPAMSAEKARPIQFGALTWESGSLITEVLRTIVEKGYGYPTDTLPG 65
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG-- 120
+ +L I + W EG + + + ++ A V +
Sbjct: 66 STVSLETALAKNDIQVIAEEW-TGRSPVWVKAEAEGKVLGLGDIVKHADEGWWVPEYVIK 124
Query: 121 ---------FALGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNNKF 164
A +K+ +D+A+YK + G +
Sbjct: 125 GDAAKGIKPMAPELKTVEDLARYKDVFKDPESPEKGRFLNSPSGWTSEIVNTQKLKAYGL 184
Query: 165 SLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG-EEISGFG- 222
+ S A +++ R P +F W P P+ L + +
Sbjct: 185 NDSFVNFRTGSGAALDAEVAAAIRLGKPVLFYYWSPTPLLGTYKFIKLQEPAFDAEAWKT 244
Query: 223 ---------------EASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQ 267
A++ V +++ + P + + K + F + L N+ + + +
Sbjct: 245 LTDASNPNPRGTSSLAATLSIGVSAEFSKQYPELVSVFKQVDFPIGLLNQTLSDMSKKHE 304
Query: 268 DRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
D + + L+ +PD+ K WL D + ++ +
Sbjct: 305 DPKVAATSFLKQNPDVWKTWLP-------ADVASRVSAAL 337
>gi|330892046|gb|EGH24707.1| histidine transporter, periplasmic histidine-binding protein
[Pseudomonas syringae pv. mori str. 301020]
gi|330987273|gb|EGH85376.1| histidine transporter, periplasmic histidine-binding protein
[Pseudomonas syringae pv. lachrymans str. M301315]
Length = 322
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 43/330 (13%), Positives = 100/330 (30%), Gaps = 33/330 (10%)
Query: 1 MYKILAVCLFLTTFSISYARD-----ADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
+ K L L A +S PV+FA W T + ++L++ G
Sbjct: 3 IRKNLTATLIALGLFAGSAASQAAGWCESGKPVKFAGLNWESGMLLTDILQILLKDGYGC 62
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
+ +L N I + W + G + V + GA
Sbjct: 63 AIDTLPGNSITMESALSNNDIQVLAEEWI-GRSEVWNKAAASGKVVGVGAPIIGATEGWY 121
Query: 116 VNDVGFALGIKSYQD------------------IAKYKKELGAKIYGIEPGNEGNQRILD 157
V K ++ + Y G +
Sbjct: 122 VPRYLVEGDAKRNLKPKAPDLKKIADLTQYVALFKDPEEPDKGRFYNCPAGWTCELENSE 181
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
M+ + + A + + + P +F W P P+ +++ L
Sbjct: 182 MLKSYGLEASYTNFRPGTGPALDAAVLSSYKRGEPILFYYWSPTPLMGQVDLLKLEEKPG 241
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTML 277
+ + S+ + + + ++ P + +L+ + + L N+ + + + D + +
Sbjct: 242 VDK--KISIQVGLSNVFHEQAPELVAVLEKVNLPIDLLNQNLARMSKERIDSPKLAKIFF 299
Query: 278 RTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ HP++ W+ ++++E +
Sbjct: 300 KEHPEIWHTWVSDA-------AAKKIEATL 322
>gi|294495021|ref|YP_003541514.1| substrate-binding region of ABC-type glycine betaine transporter
[Methanohalophilus mahii DSM 5219]
gi|292666020|gb|ADE35869.1| Substrate-binding region of ABC-type glycine betaine transport
system [Methanohalophilus mahii DSM 5219]
Length = 298
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 57/298 (19%), Positives = 103/298 (34%), Gaps = 17/298 (5%)
Query: 1 MY----KILAVCLFLTTFSISYARDADSCTP--------VRFADTGWTDIAATTAMTSVI 48
M KILA + + TP VR W D AT + I
Sbjct: 1 MKYKLLKILACLIVAIALIGAGCTSQSDETPSEETTEEPVRIGVVQWDDSRATGNVFLHI 60
Query: 49 LEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQ 108
L+E GY+ + +++ ID+ + W P+ + + +
Sbjct: 61 LDEG-GYEYETVSADLGGLYQATSQGDIDVLIQAWLPATQASYWDQYGDS-LNKAQVVSS 118
Query: 109 GAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
GAK LAV D + GI + +D+ + KI GIEPG + L+
Sbjct: 119 GAKIGLAVPDYVYDSGITTVEDLKGNASKFDGKITGIEPGAGIMVTTEQALEEYN--LEE 176
Query: 169 FRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYT 228
+ L +S + + ++ + N V W PH + + + G ++
Sbjct: 177 YELYSSSTVGMATTLQDNLDNEEWIVATLWRPHWTFARMEGLQFLEDPKGIYGGSDNLVI 236
Query: 229 VVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKN 286
+ R + + P +L++N + + +M I Q + L +P+
Sbjct: 237 LTRPGFEEDRPEFYQLIQNYEMDLNDIESIMIAID-EGQSPEEAASDWLTENPEKYDE 293
>gi|237743266|ref|ZP_04573747.1| glycine betaine transport system permease [Fusobacterium sp. 7_1]
gi|229433045|gb|EEO43257.1| glycine betaine transport system permease [Fusobacterium sp. 7_1]
Length = 513
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 40/298 (13%), Positives = 96/298 (32%), Gaps = 31/298 (10%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL- 61
K++ + LF+ F ++ ++ + A T+ M + ++E+ K NI
Sbjct: 219 KLIILGLFIVIFGAYFSLNSKKNKTINIATKPMTEGYILGQMLTELIEQDTDLKVNITNG 278
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP---------------YLEEGSIKLVA 104
++ D++ Y S E + Y E+ +++ V
Sbjct: 279 VGGGTSNIHPAIVKGEFDLYPEYTGTSWEAVLKKEASYNESKFDELQKEYKEKYNLEYVN 338
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNK 163
Y LAVN + + + K I+G E E ++
Sbjct: 339 LYGFNNTYGLAVNKDIAEKY--NLKTYSDLAKVSNNLIFGAEYDFFEREDGYKELQKVYN 396
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+ + + ++ V + + + ++ L ++ +
Sbjct: 397 MNF------KKQIDMDIGLKYQAMKDKKIDVMVIFTTDGQLAISDVVVLKDDKK--MYPS 448
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
TV+RS+ L + P + +L+ + ++ + + + + V R L+
Sbjct: 449 YRAGTVIRSEILSEYPELKPVLEKLNNILDDKTMADLNYQVESKGKKPEDVAREYLQE 506
>gi|205373640|ref|ZP_03226443.1| hypothetical protein Bcoam_10355 [Bacillus coahuilensis m4-4]
Length = 296
Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats.
Identities = 51/299 (17%), Positives = 96/299 (32%), Gaps = 33/299 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K L V + +F IS + + P+ + WT+ T + + LEE Y+ +K
Sbjct: 1 MKKSLLVVALILSFIISACSNNEGKDPIVVSGKNWTEQYILTYVIAEYLEENTDYEIELK 60
Query: 61 L--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP------------------YLEEGSI 100
V V +L+ ID+++ Y LE + Y E+ +
Sbjct: 61 EGLGEVAVLTPALEKGEIDVYVEYTGTGLEAVLKDPAKEGESAEEVFDRVNKGYQEQYNA 120
Query: 101 KLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN 160
K + Y LA+ GI++ P E + +
Sbjct: 121 KWLEPLGFQNTYTLALR---ADEGIEAKTYSDLVPVANELVFGAPHPFYERTDGFDALKD 177
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISG 220
F KG + + + +N V + N+ +
Sbjct: 178 KYGFEFKGTESFDPNI------MYEAVKNGEVDVITGFTTDARIDQYNLIATEDDLGLF- 230
Query: 221 FGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+VR + L++ P++ L + + + M + +K+D + V R L
Sbjct: 231 -PPYYAAPIVRMEVLEEYPDLEDTLNKLAGQITEEDMRAMNGRVDIDKEDYRTVARDFL 288
>gi|296328553|ref|ZP_06871072.1| glycine betaine/proline ABC superfamily ATP binding cassette
transporter, ABC protein [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
gi|296154362|gb|EFG95161.1| glycine betaine/proline ABC superfamily ATP binding cassette
transporter, ABC protein [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
Length = 513
Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats.
Identities = 40/298 (13%), Positives = 96/298 (32%), Gaps = 31/298 (10%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL- 61
K++ + LF+ F ++ ++ + A T+ M + ++E+ K NI
Sbjct: 219 KVIILGLFIVIFGAYFSLNSKKDKTINIATKPMTEGYILGQMLTELIEQDTDLKVNITNG 278
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP---------------YLEEGSIKLVA 104
++ D++ Y S E + Y E+ +++ V
Sbjct: 279 VGGGTSNIHPAIVKGEFDLYPEYTGTSWEAVLKKEASYDESKFDELQKEYKEKYNLEYVN 338
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNK 163
Y LAVN + + + K I+G E E ++
Sbjct: 339 LYGFNNTYGLAVNKDIAKKY--NLKTYSDLAKVSNNLIFGAEYDFFEREDGYKELQKVYN 396
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+ + + ++ V + + + ++ L ++ +
Sbjct: 397 MNF------KKQIDMDIGLKYQAMKDKKIDVMVIFTTDGQLAISDVVVLEDDKK--MYPS 448
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
TV+RS+ L + P + +L+ + ++ + + + + V R L+
Sbjct: 449 YRAGTVIRSEILSEYPELKPVLEKLNNILDDKTMADLNYQVESEGKKPEDVAREYLQE 506
>gi|289647971|ref|ZP_06479314.1| histidine transporter, periplasmic histidine-binding protein
[Pseudomonas syringae pv. aesculi str. 2250]
Length = 332
Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats.
Identities = 49/324 (15%), Positives = 103/324 (31%), Gaps = 43/324 (13%)
Query: 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDI 78
A A+ P++F W + T + ++E+ GY+T+ + +L I +
Sbjct: 17 AGAAEKNAPIQFGALTWESGSLITEVLRTLVEKGYGYRTDTLPGSTVSLETALAKNDIQV 76
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA-----------LGIKS 127
W +G + + ++GA V + +KS
Sbjct: 77 IAEEW-TGRSPVWVKAEADGKVLGLGNIVKGATEGWWVPEYVIKGDAAKGIKPVAPDLKS 135
Query: 128 YQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
D+A+YK + G + + + S A
Sbjct: 136 VADLARYKDVFKDPESPDKGRFLNSPSGWTSEIVNTQKLKAHGLTDSFVNFRTGSGAALD 195
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG-EEISGFG----------------E 223
+++ R P +F W P P+ + L + +
Sbjct: 196 AEVASAIRRGKPVLFYYWSPTPLLGKYKLIKLEEPAFDAEAWKTLTDASNPNPRGTSSLA 255
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDL 283
A + V +++ + P + + KN+ F + L N + + + +D L+ HP++
Sbjct: 256 AKLSIGVSAEFSKQYPELVSVFKNVDFPIDLLNRTLGEMSDKHEDPGVAAARFLKQHPEV 315
Query: 284 LKNWLIGVTTFDGQDPSRQLERFM 307
K WL D + ++ +
Sbjct: 316 WKAWLP-------ADVAAKVSHSL 332
>gi|289578807|ref|YP_003477434.1| substrate-binding region of ABC-type glycine betaine transporter
[Thermoanaerobacter italicus Ab9]
gi|289528520|gb|ADD02872.1| Substrate-binding region of ABC-type glycine betaine transport
system [Thermoanaerobacter italicus Ab9]
Length = 304
Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats.
Identities = 54/311 (17%), Positives = 98/311 (31%), Gaps = 43/311 (13%)
Query: 1 MYKILAVCLFLTTFSISYARDA------DSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
M +IL + L A ++ V +T+ M + ++E
Sbjct: 1 MKRILLLSLVFILAVTFMASCGIGSSQRNTSDTVVVGSKNFTEQIIVANMVAEMIEAHTD 60
Query: 55 YKT--NIKLLAVPVTFRSLKNK----GIDIFMGYWYPSLEKFI----------------A 92
K + L V F ++K GIDI++ Y L +
Sbjct: 61 LKVVRKLNLGGTNVNFEAIKRGGANNGIDIYVEYTGTGLVDILGMEPTTDPEKAYETVKK 120
Query: 93 PYLEEGSIKLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEG 151
Y ++ +I + Y LAV D +K++ D+AK +L
Sbjct: 121 EYKDKWNIVWLKPLGFNNTYTLAVKDELAKQYNLKTFSDLAKISDKLIL---------GA 171
Query: 152 NQRILDMINNNKFSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIH 210
+ L+ + K + + S I NN V ++ + +
Sbjct: 172 SMEFLERPDGYPGLQKVYNFKFKDAKSMDSGIRYTAIDNNEVQVIDAFSTDGLLVSHKLK 231
Query: 211 YLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQD 268
L + F ++R D LDK P + +L + + S E+ + QD
Sbjct: 232 ILED--DKHFFPPYYAVPIIRQDVLDKHPELKDVLNKLANQISDEEMQELNYKVDGRGQD 289
Query: 269 RQFVGRTMLRT 279
V + L+
Sbjct: 290 AAKVAKEFLKE 300
>gi|260430955|ref|ZP_05784926.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Silicibacter lacuscaerulensis
ITI-1157]
gi|260414783|gb|EEX08042.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Silicibacter lacuscaerulensis
ITI-1157]
Length = 316
Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats.
Identities = 52/316 (16%), Positives = 103/316 (32%), Gaps = 25/316 (7%)
Query: 1 MYKILAVCLFLTTFSISYARDADS-CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M K+ L + +A + + P++ A WT TT + +LE GY
Sbjct: 1 MKKLSVSLLAVVAAGAVHAAEMGAVDEPIKLAINEWTGQHVTTHVAGEMLEAA-GYNVEY 59
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ F++L + ID + W ++ A + EG++ + + AK +A
Sbjct: 60 VTAGMMNQFQALADGDIDATLEIWSSNVSDEYAKKIAEGTVVEIGDLGLDAKEGIAYPAH 119
Query: 120 GFA--LGIKSYQDIAKYKKELGAKIY---GIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
G+ +++ + + G + L +
Sbjct: 120 VADLCPGLPAWEALKDCAQVFATAETLPMGRLVDYPADWGTPGADRMAGLDLPFKAVPAG 179
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE------------------ 216
SE A +++R P + W+PH S ++ ++
Sbjct: 180 SEGALIAELRASTERKSPLLITFWQPHWAMSAYDVKFVDLPPGEEACFTDPAWGPNPNAV 239
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
F + ++ S DK P +L N + SV + MM I + + V
Sbjct: 240 NDCDFAPSRIFKAAWSGMADKWPAAYEILSNYQLSVEDQQPMMGAIDVDGGKVEEVVADW 299
Query: 277 LRTHPDLLKNWLIGVT 292
+ + D + + T
Sbjct: 300 MAQNEDKWRPVVDAAT 315
>gi|307946986|ref|ZP_07662321.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Roseibium sp. TrichSKD4]
gi|307770650|gb|EFO29876.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Roseibium sp. TrichSKD4]
Length = 316
Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats.
Identities = 40/308 (12%), Positives = 85/308 (27%), Gaps = 25/308 (8%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
+ + + A DS P+ W+ + + I EE +G
Sbjct: 6 ILAAAAVFVGGLGGAVAKDSRDPIIIPVHNWSSQIVMSNVVGQIFEE-MGNIVEYVTTDS 64
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA-- 122
+ S++ + + M W + LE+G I ++ +
Sbjct: 65 QAVYESVRLGDVSLEMEVWEGAFGASFRAALEKGGIHDAGDHDAVTREDWWYPLWTKESC 124
Query: 123 LGIKSYQDIAKYKKELGAKIYGIEPGN---EGNQRILDMINNNKFSLKGFRLIEASELAS 179
G+ +Q + G + + + L + S A
Sbjct: 125 PGLPDWQALNDCAHLFATVETGTKGRYLDGPVDWLKHGKERADALGLNFTVINAGSAAAL 184
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG-------------------EEISG 220
+++I Q P + +W P+ + ++ +
Sbjct: 185 WAEIGAAQAKKKPVLVFNWTPNFAEAVWPGEFVEFPAWEDGCDTDPSKGPNPEALYDCGN 244
Query: 221 FGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ DK P L I F+ EM KL+ ++ + L +
Sbjct: 245 PAAGYLKKAAWDGMKDKWPAAYCALTKISFTNPQIAEMAKLVDTDELEPDEAAEQWLDAN 304
Query: 281 PDLLKNWL 288
D++ W+
Sbjct: 305 RDVVDPWI 312
>gi|78061430|ref|YP_371338.1| ABC proline/glycine betaine transporter, periplasmic ligand binding
protein [Burkholderia sp. 383]
gi|77969315|gb|ABB10694.1| ABC proline/glycine betaine transporter, periplasmic ligand binding
protein [Burkholderia sp. 383]
Length = 287
Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats.
Identities = 57/272 (20%), Positives = 112/272 (41%), Gaps = 12/272 (4%)
Query: 1 MY---KILAVCLFLTTFSISYARDADSCTPVRFADT-GWTDIAATTAMTSVILEEILGYK 56
M K+L ++S + AD+ ++ GW D AT+ + + ++E+ LGY+
Sbjct: 1 MKLFGKLLWTGALSAMVALSASALADTKPTLKIGYVEGWDDSVATSNVAARVIEKKLGYQ 60
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ +A + ++ + +D + W P + + + N AK L V
Sbjct: 61 VQLVPVAAGIMWQGVARGDLDATLSAWLPVTHGSYWGEY-KTKVVDLGANFPDAKIGLIV 119
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
D A KS D+ K + +I GI+ G ++ D I + + + L+ +S
Sbjct: 120 PDYVKA---KSIDDLNAEKSDFSGRIVGIDAGAGVMRKTDDAIKSYGLN---YTLMPSSG 173
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
A +++ R +N P + W PH + + + +L +++ G G V +VV
Sbjct: 174 GAMTAELARSVGSNKPVIVTGWAPHWMFAKWKLRFLEDPKKVFG-GAEHVDSVVNPGLET 232
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQD 268
K + LK ++ + +M I N +
Sbjct: 233 KAKPVVAFLKKFQWKPGEIDSVMLAIQNGSKP 264
>gi|297545027|ref|YP_003677329.1| glycine betaine ABC transporter substrate-binding protein
[Thermoanaerobacter mathranii subsp. mathranii str. A3]
gi|296842802|gb|ADH61318.1| Substrate-binding region of ABC-type glycine betaine transport
system [Thermoanaerobacter mathranii subsp. mathranii
str. A3]
Length = 304
Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats.
Identities = 53/311 (17%), Positives = 97/311 (31%), Gaps = 43/311 (13%)
Query: 1 MYKILAVCLFLTTFSISYARDA------DSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
M +IL + L A ++ V +T+ M + ++E
Sbjct: 1 MKRILLLSLVFILAVTFMASCGIGSSQRNANDTVVVGSKNFTEQIIVANMVAEMIEAHTD 60
Query: 55 YKT--NIKLLAVPVTFRSLKNK----GIDIFMGYWYPSLEKFI----------------A 92
K + L V F ++K GIDI++ Y L +
Sbjct: 61 LKVVRKLNLGGTNVNFEAIKRGGANNGIDIYVEYTGTGLVDILGMEPTTDPEKAYETVKK 120
Query: 93 PYLEEGSIKLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEG 151
Y ++ +I + Y LAV D +K++ D+AK +L
Sbjct: 121 EYKDKWNIVWLKPLGFNNTYTLAVKDELAKQYNLKTFSDLAKISDKLIL---------GA 171
Query: 152 NQRILDMINNNKFSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIH 210
L+ + K + + S I NN V ++ + +
Sbjct: 172 TMEFLERPDGYPGLQKVYNFKFKDAKSMDSGIRYTAIDNNEVQVIDAFSTDGLLVSHKLK 231
Query: 211 YLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQD 268
L + F ++R D LDK P + +L + + S ++ + QD
Sbjct: 232 ILED--DKHFFPPYYAVPIIRQDVLDKHPELKDVLNKLANQISDEEMQKLNYKVDGEGQD 289
Query: 269 RQFVGRTMLRT 279
V + L+
Sbjct: 290 AAKVAKEFLKE 300
>gi|104781567|ref|YP_608065.1| amino acid transporter periplasmic amino acid-binding protein
[Pseudomonas entomophila L48]
gi|95110554|emb|CAK15262.1| putative amino acid transporter, periplasmic amino acid-binding
protein [Pseudomonas entomophila L48]
Length = 338
Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats.
Identities = 52/325 (16%), Positives = 98/325 (30%), Gaps = 43/325 (13%)
Query: 18 YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGID 77
A A P+ F GW A TT + I+E GY T+ + +L +
Sbjct: 22 SAAAAKQPAPIHFGAIGWESGALTTEILRFIVEHGYGYPTDTLPGSTVSMEVALARNDLQ 81
Query: 78 IFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV-----------GFALGIK 126
+ W + G + + + ++ A+ V A +
Sbjct: 82 VIAEEWA-GRSPAWVKAEQAGQVFALGDTVKNAEEGWWVPAYVIKGDAARNLKALAPDLH 140
Query: 127 SYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
D+ +Y + + G + S A
Sbjct: 141 HVADLKRYPEVFKDPEAPGKGRFLNSPSGWTSETVNSQKLKAYGLDGLYNNFRSGSGAAL 200
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE-EISGFG---------------- 222
++I R P +F W P P+ ++ L + S +
Sbjct: 201 DAEIAAQIRLGKPVLFYYWSPTPLIGRYDLVRLEEPPFDASAWATLTDAANPNPKGSRSL 260
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPD 282
A + V + D P + L + + + L N+ + + +Q + T LR HP+
Sbjct: 261 PAKLSIGVSKAFHDTHPELVALFEKVDLPIDLLNKALARMSELRQKPREAALTFLRDHPE 320
Query: 283 LLKNWLIGVTTFDGQDPSRQLERFM 307
+ K WL D + ++E +
Sbjct: 321 VWKAWLP-------ADSAAKVEAAL 338
>gi|33862828|ref|NP_894388.1| glycine betaine/proline ABC transporter substrate-binding protein
[Prochlorococcus marinus str. MIT 9313]
gi|33634744|emb|CAE20730.1| ABC transporter substrate binding protein, glycine betaine/proline
family [Prochlorococcus marinus str. MIT 9313]
Length = 302
Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats.
Identities = 46/302 (15%), Positives = 100/302 (33%), Gaps = 10/302 (3%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL 62
+ L++ + + +R T W D + M ++E +
Sbjct: 8 RNLSLVIAGVLMTGLSGCSNAKPDQLRIGWTAWADADVVSLMAEKLIESHYEQPVERVMA 67
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
+ + + S+ +D+ + W P + + + + G + V D
Sbjct: 68 DIGIQYDSVARGKLDLMLMAWLPKTHDKYWQKVSD-RVVDLGTMYSG-RIGWVVPDYVPK 125
Query: 123 LGIKSYQDI--AKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
I S D+ K + + GI+PG+ Q + S +LI AS A
Sbjct: 126 QRIGSIGDLSDPKIANDFNNTVQGIDPGSGLMQASEQALTAYDLSD--LKLISASGAAMT 183
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ + R ++ V W PH + + + +L + + G E ++ + R P
Sbjct: 184 AVLDRAINDDRWVVVTGWTPHWMFARYKLRFLKDPKSVFGGQEG-IHAIARLGLDKDHPK 242
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPS 300
+ K S + M+ + + + + + W+ G T + +D
Sbjct: 243 VVAFFTRFKLSDGQLDTMLL--DAQNTSTEEAVNNYIANNRNQIDYWMNG-TMQEPKDRE 299
Query: 301 RQ 302
+
Sbjct: 300 AK 301
>gi|260495111|ref|ZP_05815240.1| glycine betaine transport system permease [Fusobacterium sp.
3_1_33]
gi|260197554|gb|EEW95072.1| glycine betaine transport system permease [Fusobacterium sp.
3_1_33]
Length = 513
Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats.
Identities = 40/298 (13%), Positives = 95/298 (31%), Gaps = 31/298 (10%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL- 61
K++ + LF+ F ++ + + A T+ M + ++E+ K NI
Sbjct: 219 KLIILGLFIVIFGAYFSLNLKKDKTINIATKPMTEGYILGQMLTELIEQDTDLKVNITNG 278
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP---------------YLEEGSIKLVA 104
++ D++ Y S E + Y E+ +++ V
Sbjct: 279 VGGGTSNIHPAIVKGEFDLYPEYTGTSWEAVLKKEASYNESKFDELQKEYKEKYNLEYVN 338
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNK 163
Y LAVN + + + K I+G E E ++
Sbjct: 339 LYGFNNTYGLAVNKDIAKKY--NLKTYSDLAKVSNNLIFGAEYDFFEREDGYKELQKVYN 396
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+ + + ++ V + + + ++ L ++ +
Sbjct: 397 MNF------KKQIDMDIGLKYQAMKDKKIDVMVIFTTDGQLAISDVVVLEDDKK--MYPS 448
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
TV+RS+ L + P + +L+ + ++ + + + + V R L+
Sbjct: 449 YRAGTVIRSEILSEYPELKPVLEKLNNILDDKTMADLNYQVESEGKKPEDVAREYLQE 506
>gi|332978589|gb|EGK15295.1| glycine/betaine ABC superfamily ATP binding cassette transporter,
substrate-binding protein [Psychrobacter sp. 1501(2011)]
Length = 662
Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats.
Identities = 46/325 (14%), Positives = 105/325 (32%), Gaps = 39/325 (12%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKG 75
+ A D +P++F W +A+ +I EE G T P +L
Sbjct: 22 VFAACGDDQNSPIKFGSLTWESGQFISAVLQIIAEEGYGCTTESVPGTGPALETALSQDD 81
Query: 76 IDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA--LGIKSYQDIAK 133
I + W + + + + GA V +K Y+++A+
Sbjct: 82 IQVIGEQWVGRSPIMEEAIAADKAAVIGSTLQGGATQGWYVPKYVLEENPELKDYKNLAR 141
Query: 134 YKKELGA-------KIYGIEPGNEGNQRILDMINNNKF------SLKGFRLIEASELASF 180
+ + G ++ N +K + + A
Sbjct: 142 FSHLFTDPENPKNARFMNCPTGWTCEVFNSHLLKNLGLTQPNAQGVKFNNVHPGTGAALD 201
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE-----------------ISGFGE 223
++I + P +F W+P + + + + + +SGF
Sbjct: 202 AEISSAFEQHKPLLFYYWQPTGLMAKYDFAPIAFPKHDEKCWDKLLDAKSNTDCVSGFPV 261
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDL 283
+ + V ++ + P + ++FS N + + +K+ + + L+ +P++
Sbjct: 262 SELGIAVSKPFMSQQPQLLEAFNKVQFSPDTLNGAILEMNESKRSGEEQAKLFLQQNPEV 321
Query: 284 LKNWLIGVTTFDGQDPSRQLERFMN 308
K+WL + + +L +N
Sbjct: 322 WKDWLT-------PEAANRLASSLN 339
>gi|256028621|ref|ZP_05442455.1| glycine betaine transport system permease protein [Fusobacterium
sp. D11]
gi|289766539|ref|ZP_06525917.1| glycine betaine transport system permease [Fusobacterium sp. D11]
gi|289718094|gb|EFD82106.1| glycine betaine transport system permease [Fusobacterium sp. D11]
Length = 513
Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats.
Identities = 41/298 (13%), Positives = 95/298 (31%), Gaps = 31/298 (10%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL- 61
K++ + LF+ F + ++ ++ + A T+ M + ++E+ K NI
Sbjct: 219 KLIILGLFIVIFGVYFSLNSKKDKTINIATKPMTEGYILGQMLTELIEQDTDLKVNITNG 278
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP---------------YLEEGSIKLVA 104
++ D++ Y S E + Y E+ +++
Sbjct: 279 VGGGTSNIHPAIVKGEFDLYPEYTGTSWEAVLKKEASYDESKFDELQKEYKEKYNLEYAN 338
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNK 163
Y LAVN + + + K I+G E E ++
Sbjct: 339 LYGFNNTYGLAVNKDIAEKY--NLKTYSDLAKVSNNLIFGAEYDFFEREDGYKELQKVYN 396
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
K + ++ V + + + ++ L ++ +
Sbjct: 397 IDFKKK------IDMDIGLKYQAMKDKKIDVMVIFTTDGQLAVSDVIVLEDDKK--MYPS 448
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
TVVRS+ L + P + +L+ + ++ + + + + V R L+
Sbjct: 449 YRAGTVVRSEILSEYPELKPVLEKLNNILDDKTMADLNYQVESKGKKPEDVAREYLQE 506
>gi|83716434|ref|YP_440053.1| ABC transporter periplasmic glycine/betaine-binding protein
[Burkholderia thailandensis E264]
gi|167616754|ref|ZP_02385385.1| ABC transporter, periplasmic glycine/betaine-binding protein
[Burkholderia thailandensis Bt4]
gi|257143241|ref|ZP_05591503.1| ABC transporter, periplasmic glycine/betaine-binding protein
[Burkholderia thailandensis E264]
gi|83650259|gb|ABC34323.1| ABC transporter, periplasmic glycine/betaine-binding protein
[Burkholderia thailandensis E264]
Length = 287
Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats.
Identities = 58/292 (19%), Positives = 110/292 (37%), Gaps = 13/292 (4%)
Query: 1 MY---KILAVCLFLTTFSISYARDADSCTPVRFADT-GWTDIAATTAMTSVILEEILGYK 56
M K++ + + + AD+ ++ GW D AT+ + + I+E LGY
Sbjct: 1 MKFLTKLMGCGVLSMMLAAAAPVQADTKPTLKIGYVEGWDDSVATSNVAARIIETKLGYP 60
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ +A V ++ + +D + W P + + + + N AK L V
Sbjct: 61 VQLVPVAAGVMWQGVARGDLDATLSAWLPVTQGAYWE-QFKTKVVDLGTNFPDAKIGLIV 119
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ A I + K E +I GI+ G ++ D I + + L+ +S
Sbjct: 120 PNYVKAKTIAD---LNAEKDEFAGRIVGIDAGAGVMRKTDDAIKAYGLN---YSLMPSSG 173
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
A +++ R N V W PH + + + +L +++ G E V +VV
Sbjct: 174 SAMTAELARSIHANKAVVVTGWAPHWMFAKWKLRFLDDPKKVYGEAE-HVDSVVNPALET 232
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
K + LK ++ + +M I + + H D + WL
Sbjct: 233 KAKPVVAFLKKFQWKPGEIDGVMLSI-QSGSKPAAAADAWIAAHGDRVGEWL 283
>gi|254467205|ref|ZP_05080616.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Rhodobacterales bacterium
Y4I]
gi|206688113|gb|EDZ48595.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Rhodobacterales bacterium
Y4I]
Length = 321
Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats.
Identities = 44/307 (14%), Positives = 97/307 (31%), Gaps = 24/307 (7%)
Query: 9 LFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTF 68
+ + S A D+ P++ A WT TT + +L+ GY + F
Sbjct: 15 MTVAAGIASAAELGDTSKPIKLAVNEWTGQHVTTHIAGEMLKAA-GYDVEYVSAGMMNQF 73
Query: 69 RSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA--LGIK 126
+++ + I + W ++ A +EEG++ + + A+ +A G+
Sbjct: 74 QAIADGDIHATLEIWSSNVSDEYAKKIEEGTVVELGDLELNAREGIAYPAHVAEICPGLP 133
Query: 127 SYQDIAKYKKELGAKIY---GIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
+++ + + G + L + SE A ++
Sbjct: 134 AWEALKDCAMQFATAETLPEGRLVDYPADWGTPGADRMTGLGLPFKAVPAGSEAALIVEL 193
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE------------------EISGFGEAS 225
R P + W+PH S ++ ++ F +
Sbjct: 194 RAATERKTPLLITFWQPHWAMSAYDVKFVDLPPGEEACFSDPAWGPNPDAVNDCDFSPSR 253
Query: 226 VYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLK 285
++ S + P +L N +V + MM + + + V + + D +
Sbjct: 254 IFKAAWSGMEETWPAAYEILSNYTLAVEDQQPMMGAVDVDGGKVEEVVAEWMAANEDKWR 313
Query: 286 NWLIGVT 292
+ T
Sbjct: 314 PVVDAAT 320
>gi|294339046|emb|CAZ87395.1| Putative ABC-type glycine betaine transport systems, periplasmic
component [Thiomonas sp. 3As]
Length = 286
Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats.
Identities = 47/271 (17%), Positives = 93/271 (34%), Gaps = 9/271 (3%)
Query: 20 RDADSCTPVRFADT-GWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDI 78
A PV W TT + + I+++ LGY T++ + ++ + D
Sbjct: 23 AFAADKAPVSMTYVASWPSSNITTHIAARIIQKKLGYPTHLTSTDAGPMWAAVASGRADA 82
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL 138
+ W P+ + ++ + + +G LAV I + ++ + +
Sbjct: 83 MLTAWLPTTHQVYWDKYKK-DVVDLGAITEGTWLGLAVPKYVP---INTIAELETHHAKF 138
Query: 139 GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
+I GIE G I L+ +S A +Q++R V +W
Sbjct: 139 KNRITGIEAGAGIMINTQKAIKAYDLKDM--ELLTSSTAAMQAQLKRAVERKDWIVVTAW 196
Query: 199 EPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEM 258
+P I + + L + I G + ++ P + + L++ K + M
Sbjct: 197 KPLGIWAQFPLKTLEDPKHIYGV-SGHIDAIINPKLEKSAPRVVQFLRDFKLPLDDIQAM 255
Query: 259 MKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
M LN + V + H + W
Sbjct: 256 MVE-LNGGKSMPEVTAQWISAHQAQVDGWTK 285
>gi|254417230|ref|ZP_05030975.1| ABC transporter, QAT family, substrate-binding protein, putative
[Microcoleus chthonoplastes PCC 7420]
gi|196176036|gb|EDX71055.1| ABC transporter, QAT family, substrate-binding protein, putative
[Microcoleus chthonoplastes PCC 7420]
Length = 298
Score = 156 bits (393), Expect = 5e-36, Method: Composition-based stats.
Identities = 41/297 (13%), Positives = 87/297 (29%), Gaps = 29/297 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M + + + + + ++ +T+ M +++LE G+ K
Sbjct: 4 MRRTVTLIGLAVLTMLFAIACQGGGSAIKVGSKDFTEQFILGEMYALVLENQ-GFDVERK 62
Query: 61 --LLAVPVTFRSLKNKGIDIFMGYWYPS----------------LEKFIAPYLEEGSIKL 102
L PV L++ ID++ Y + + Y E+ ++
Sbjct: 63 LNLGGTPVAQAGLESGQIDLYPEYTGTALLTVLNRPVSSDSQQVYQTVADSYQEKYNLVW 122
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
+ L + G + + I+ + P E + L +
Sbjct: 123 LEPAPMNNTQALVMTPEGAKDY--NIETISDMVDQASQLTLIGPPEFEVREDGLPGLKQV 180
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
+ + I + V +++ S N+ L +
Sbjct: 181 YGDFQLKKFIPTDPGLR----YQALSEGQADVAVAFGTDGEISAFNLVVLEDNQNFF--P 234
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
V VVR + L+K P I L + K + + + K++ V R L
Sbjct: 235 PYQVAPVVRQETLEKHPGIRDALNQLAPKLTNETMRRLNYEVSGKKREPAEVAREFL 291
>gi|154251521|ref|YP_001412345.1| substrate-binding region of ABC-type glycine betaine transport
system [Parvibaculum lavamentivorans DS-1]
gi|154155471|gb|ABS62688.1| Substrate-binding region of ABC-type glycine betaine transport
system [Parvibaculum lavamentivorans DS-1]
Length = 633
Score = 156 bits (393), Expect = 5e-36, Method: Composition-based stats.
Identities = 48/312 (15%), Positives = 94/312 (30%), Gaps = 38/312 (12%)
Query: 15 SISYARDADSC---TPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSL 71
S A A SC PV F W A T + +I+E G +T++ + L
Sbjct: 19 FPSGAAAAPSCAIDRPVMFGGLDWDSNAFHTELARLIIERGYGCETDVLPGSTLPLVTGL 78
Query: 72 KNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA--------- 122
ID+ M W ++ + LE G++ + N A V
Sbjct: 79 GQGDIDVLMEIWRDNVTEPWNEALEAGTVVSLGTNFPDAVQGWYVPRYVIEGDAARGIEP 138
Query: 123 --LGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
++S D+ ++ + Y G ++ +
Sbjct: 139 MAPDLRSVSDLKQHAALFRDPEQPGKGRFYNCILGWSCEEQSTRKLEGYGLDRFYTNFRP 198
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISG------------- 220
+ A + I P V W P + ++ L
Sbjct: 199 GTGAALAAAIASAYERGEPVVAYYWGPTWVLGTYDLVKLEEPPYSEEAWNAFNADPKRNP 258
Query: 221 ---FGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNN-KQDRQFVGRTM 276
F V + + ++ P I+ L+ + + + +E + + N + +
Sbjct: 259 PVAFPTVEVIIGANARFAERAPEITAFLRAYETTGQMTSEALAYMQANSEASARDAALHF 318
Query: 277 LRTHPDLLKNWL 288
+ T PD+ + W+
Sbjct: 319 IETRPDIWRQWV 330
>gi|330810198|ref|YP_004354660.1| ABC transporter periplasmic protein [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|327378306|gb|AEA69656.1| putative ABC transporter, periplasmic component [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 336
Score = 156 bits (393), Expect = 5e-36, Method: Composition-based stats.
Identities = 49/345 (14%), Positives = 105/345 (30%), Gaps = 47/345 (13%)
Query: 1 MYKI---LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M ++ LA A + P+ FAD W + T + +I+E+ G +T
Sbjct: 1 MKRVRQWLAAWATFAVLVSPLPASAATA-PIHFADLNWESGSLITDILRIIVEKGYGLQT 59
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+ +L N I + W EG + + + ++GA V
Sbjct: 60 DTLPGTTITLETALANNDIQVIGEEWA-GRSPVWVKAEAEGKVVALGDTVKGATEGWWVP 118
Query: 118 DVGFA-----------LGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMI 159
+ ++S +D+A+YK + G +
Sbjct: 119 EYVIKGDPAKGIKPLAPDLRSVEDLARYKHVFKDPESPDKGRFLNSPIGWTSEVVNKQKL 178
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE-EI 218
S S A ++I R P +F W P P+ + L +
Sbjct: 179 KAYGLSDSYVNFRSGSGAALDAEISSTIRRGKPILFYYWSPTPLLGRFKLVQLQEPPFDA 238
Query: 219 SGFG----------------EASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI 262
+ + + V + + + P+I+ + + N+ + +
Sbjct: 239 EAWKTLTDADNPNPKPTRSLASKLSIGVSAPFQKQYPDIAEFFSKVDLPIEPLNKALADM 298
Query: 263 LNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ + L+ HP + + WL ++ + ++ +
Sbjct: 299 SEKRTPPREAAEAFLKAHPQVWQAWLP-------KEVADKVSAGL 336
>gi|167584667|ref|ZP_02377055.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia ubonensis Bu]
Length = 287
Score = 156 bits (393), Expect = 5e-36, Method: Composition-based stats.
Identities = 62/296 (20%), Positives = 116/296 (39%), Gaps = 13/296 (4%)
Query: 1 MY---KILAVCLFLTTFSISYARDADSCTPVRFADT-GWTDIAATTAMTSVILEEILGYK 56
M K+L ++S + AD+ ++ GW D AT+ + + I+E+ LGY+
Sbjct: 1 MKLFGKLLYAGALSAMVALSASALADTKPTLKIGYVEGWDDSVATSNVAARIIEKKLGYQ 60
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ +A V ++ + +D + W P + + + N AK L V
Sbjct: 61 VQLVPVAAGVMWQGVARGDLDATLSAWLPVTHGSYWDQY-KAKVVDLGANFNDAKIGLIV 119
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
A KS ++ K + G +I GI+ G ++ + I N + + L+ +S
Sbjct: 120 PAYVKA---KSIDELNAEKADFGGRIVGIDAGAGVMRKTDEAIKNYGLN---YSLMPSSG 173
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
A +++ R N P + W PH + + + +L +++ G G V +V
Sbjct: 174 SAMTAELARSVNANKPVIVTGWAPHWMFAKWKLRFLDDPKKVFG-GAEHVDSVANPGLET 232
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVT 292
K + LK ++ + +M I N + H D + W GV
Sbjct: 233 KAKPVVAFLKKFQWKPGEIDSVMLAI-QNGSKPDAAADAWIAAHADRVNAWTEGVQ 287
>gi|167039848|ref|YP_001662833.1| glycine betaine ABC transporter substrate-binding protein
[Thermoanaerobacter sp. X514]
gi|300915383|ref|ZP_07132697.1| Substrate-binding region of ABC-type glycine betaine transport
system [Thermoanaerobacter sp. X561]
gi|307724828|ref|YP_003904579.1| Substrate-binding region of ABC-type glycine betaine transport
system [Thermoanaerobacter sp. X513]
gi|166854088|gb|ABY92497.1| Substrate-binding region of ABC-type glycine betaine transport
system [Thermoanaerobacter sp. X514]
gi|300888659|gb|EFK83807.1| Substrate-binding region of ABC-type glycine betaine transport
system [Thermoanaerobacter sp. X561]
gi|307581889|gb|ADN55288.1| Substrate-binding region of ABC-type glycine betaine transport
system [Thermoanaerobacter sp. X513]
Length = 304
Score = 156 bits (393), Expect = 5e-36, Method: Composition-based stats.
Identities = 52/311 (16%), Positives = 96/311 (30%), Gaps = 43/311 (13%)
Query: 1 MYKILAVCLFLTTFSISYARDA------DSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
M +IL + L A ++ V +T+ M + ++E
Sbjct: 1 MKRILLLSLVFILAVTFMASCGIGSSQRNANDTVVVGSKNFTEQIIVANMVAEMIEAHTD 60
Query: 55 YKT--NIKLLAVPVTFRSLKNK----GIDIFMGYWYPSLEKFI----------------A 92
K + L V F ++K GIDI++ Y L +
Sbjct: 61 LKVVRKLNLGGTNVNFEAIKRGGANNGIDIYVEYTGTGLVDILGMEPTTDPEKAYETVKK 120
Query: 93 PYLEEGSIKLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEG 151
Y ++ +I + Y LAV D +K++ D+AK +L
Sbjct: 121 EYKDKWNIVWLKPLGFNNTYTLAVKDELAKQYNLKTFSDLAKISDKLIL---------GA 171
Query: 152 NQRILDMINNNKFSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIH 210
L+ + K + + I NN V ++ + +
Sbjct: 172 TMEFLERPDGYPGLQKVYNFKFKHTKSMDMGIRYTAIDNNEVQVIDAFATDGLLVSHKLK 231
Query: 211 YLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQD 268
L + F ++R D LDK P + +L + + S ++ + QD
Sbjct: 232 ILED--DKHFFPPYYAAPIIRQDVLDKHPELKDVLNKLANQISDEEMQKLNYKVDGEGQD 289
Query: 269 RQFVGRTMLRT 279
V + L+
Sbjct: 290 PAKVAKEFLKE 300
>gi|307265979|ref|ZP_07547527.1| Substrate-binding region of ABC-type glycine betaine transport
system [Thermoanaerobacter wiegelii Rt8.B1]
gi|306919043|gb|EFN49269.1| Substrate-binding region of ABC-type glycine betaine transport
system [Thermoanaerobacter wiegelii Rt8.B1]
Length = 304
Score = 156 bits (393), Expect = 6e-36, Method: Composition-based stats.
Identities = 54/311 (17%), Positives = 97/311 (31%), Gaps = 43/311 (13%)
Query: 1 MYKILAVCLFLTTFSISYARDA------DSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
M +IL + L A ++ V +T+ M + ++E
Sbjct: 1 MKRILLLSLVFILAVTFMASCGIGSSQRNANDTVVVGSKNFTEQIIVANMVADMIEAHTN 60
Query: 55 YKTNIK--LLAVPVTFRSLKNK----GIDIFMGYWYPSLEKFI----------------A 92
K K L V F ++K GIDI++ Y L +
Sbjct: 61 LKVERKLNLGGTNVNFEAIKRGGANNGIDIYVEYTGTGLVDILGMKPTTDPEKAYETVKK 120
Query: 93 PYLEEGSIKLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEG 151
Y ++ +I + Y LAV D +K++ D+AK +L
Sbjct: 121 EYKDKWNIVWLKPLGFNNTYTLAVKDELAKQYNLKTFSDLAKISDKLIL---------GA 171
Query: 152 NQRILDMINNNKFSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIH 210
L+ + K + + S I NN V ++ + +
Sbjct: 172 TMEFLERPDGYPGLQKVYNFKFKDAKSMDSGIRYTAIDNNEVQVIDAFSTDGLLVSHKLK 231
Query: 211 YLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQD 268
L + F ++R D LDK P + +L + + S ++ + QD
Sbjct: 232 ILED--DKHFFPPYYAVPIIRQDVLDKHPELKDVLNKLANQISDEEMQKLNYKVDGEGQD 289
Query: 269 RQFVGRTMLRT 279
V + L+
Sbjct: 290 AAKVAKEFLKE 300
>gi|15594489|ref|NP_212278.1| glycine betaine, L-proline ABC transporter,
glycine/betaine/L-proline-binding protein (proX)
[Borrelia burgdorferi B31]
gi|195941878|ref|ZP_03087260.1| glycine betaine, L-proline ABC transporter,
glycine/betaine/L-proline-binding protein (proX)
[Borrelia burgdorferi 80a]
gi|226320664|ref|ZP_03796222.1| glycine betaine, L-proline ABC transporter,
glycine/betaine/L-proline-binding protein [Borrelia
burgdorferi 29805]
gi|2688024|gb|AAC66525.1| glycine betaine, L-proline ABC transporter,
glycine/betaine/L-proline-binding protein (proX)
[Borrelia burgdorferi B31]
gi|226233880|gb|EEH32603.1| glycine betaine, L-proline ABC transporter,
glycine/betaine/L-proline-binding protein [Borrelia
burgdorferi 29805]
Length = 290
Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats.
Identities = 49/263 (18%), Positives = 96/263 (36%), Gaps = 7/263 (2%)
Query: 26 TPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYP 85
V+ W A T + V+ E +GY I + + ++ L + ID + W P
Sbjct: 26 KSVKIGYVNWGGETAATNVLKVVFE-KMGYNAEIFSVTTSIMYQYLASGKIDGTVSSWVP 84
Query: 86 SLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGI 145
+ +KF L + + N +G V I S ++ + K+ GI
Sbjct: 85 TADKFYYEKL-KTKFVDLGANYEGTIQGFVVPSYVP---ISSISELKGKGDKFKNKMIGI 140
Query: 146 EPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINS 205
+ G +N S + L+ +SE + + + N + W+PH S
Sbjct: 141 DAGAGTQIVTEQALNYYGLSK-EYELVPSSESVMLASLDSSIKRNEWILVPLWKPHWAFS 199
Query: 206 DLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNN 265
+I +L ++ G SV+T+VR + + + + +S L +M
Sbjct: 200 RYDIKFLDDP-DLIMGGIESVHTLVRLGLENDDFDAYYVFDHFYWSDDLILPLMDKNDKE 258
Query: 266 KQDRQFVGRTMLRTHPDLLKNWL 288
+ + +++K W+
Sbjct: 259 PGKEYRNAVEFVEKNKEIVKTWV 281
>gi|256846922|ref|ZP_05552376.1| glycine betaine transport system permease [Fusobacterium sp.
3_1_36A2]
gi|294784263|ref|ZP_06749558.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Fusobacterium sp.
3_1_27]
gi|256717720|gb|EEU31279.1| glycine betaine transport system permease [Fusobacterium sp.
3_1_36A2]
gi|294488129|gb|EFG35480.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Fusobacterium sp.
3_1_27]
Length = 513
Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats.
Identities = 40/298 (13%), Positives = 96/298 (32%), Gaps = 31/298 (10%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL- 61
K++ + LF+ F ++ ++ + A T+ M + ++E+ K NI
Sbjct: 219 KLIILGLFIVIFGAYFSLNSKKDKTINIATKPMTEGYILGQMLTELIEQDTDLKVNITNG 278
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP---------------YLEEGSIKLVA 104
++ D++ Y S E + Y E+ +++
Sbjct: 279 VGGGTSNIHPAIVKGEFDLYPEYTGTSWEAVLKKEASYDESKFDELQKEYKEKYNLEYAN 338
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNK 163
Y LAVN + + + K I+G E E ++
Sbjct: 339 LYGFNNTYGLAVNKDIAEKY--NLKTYSDLAKISNNLIFGAEYDFFEREDGYKELQKVYN 396
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+ + + ++ V + + + ++ L ++ +
Sbjct: 397 INF------KKQIDMDIGLKYQAMKDKKIDVMVIFTTDGQLAISDVLVLEDDKK--MYPS 448
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
TVVRS+ L + P + +L+ + + ++ + + + + V R L+
Sbjct: 449 YRAGTVVRSEILSEYPELKPILEKLNNILDDKIMADLNYQVESKGKKPEDVAREYLQE 506
>gi|53717098|ref|YP_105257.1| putative ABC transporter, periplasmic glycine/betaine-binding
protein [Burkholderia mallei ATCC 23344]
gi|52423068|gb|AAU46638.1| putative ABC transporter, periplasmic glycine/betaine-binding
protein [Burkholderia mallei ATCC 23344]
Length = 284
Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats.
Identities = 87/284 (30%), Positives = 139/284 (48%), Gaps = 47/284 (16%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWY 84
C +R A GWTDI AT A+ V+L+ LGY+ ++ L+VP+T++ LK +D+F+G W
Sbjct: 46 CRDMRMAGPGWTDIEATNALAGVVLKA-LGYRQSVSNLSVPITYQGLKKGQLDVFLGNWM 104
Query: 85 PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYG 144
P+ + P+++ +I ++ NL AK+ LAV D A G+ S+ D+AKY + GAKIYG
Sbjct: 105 PAQAPLVKPFVDARAIDVLHANLSHAKFTLAVPDYVAAAGVHSFADLAKYAQRFGAKIYG 164
Query: 145 IEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPIN 204
IEPG NQ I M+ + ++L+E+SE +Q+ R
Sbjct: 165 IEPGAPANQNISRMLADKALGPANWQLVESSETGMLTQVERA------------------ 206
Query: 205 SDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILN 264
D+ +C N++RL + + F+V LEN M+ +L
Sbjct: 207 ----------------------------DFASQCANLARLFRQMTFTVDLENGMIAAMLQ 238
Query: 265 NKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
K+ + LR +P L++ WL GV T G + ++
Sbjct: 239 GKRSAVDAAQHALRANPSLVEAWLDGVRTASGAPGLPAVRAALD 282
>gi|313498506|gb|ADR59872.1| Substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas putida BIRD-1]
Length = 338
Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats.
Identities = 50/346 (14%), Positives = 103/346 (29%), Gaps = 47/346 (13%)
Query: 1 MYKI----LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
M I + L + S A A+ P+ F GW A TT + +I+E GY
Sbjct: 1 MKSISTLLAGLLLTVGLASSDSAASAEQPAPIHFGAIGWESGALTTEILRLIVERGYGYT 60
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
T+ + +L + + W + G + + + ++ A+ V
Sbjct: 61 TDTLPGSTVSMEVALARNDLQVIAEEWA-GRSPAWVKAEQAGQVFALGDTVKNAEEGWWV 119
Query: 117 NDVGFA-----------LGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDM 158
+ S +D+ +Y + + G
Sbjct: 120 PAYVIEGDAARNLKPVAPELHSVEDLKRYPQVFSDPESPGKGRFLNSPSGWTSETVNSQK 179
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLN---------- 208
+ S A ++I R P +F W P P+
Sbjct: 180 LKAYGLDGLYNNFRSGSGAAMDAEIGSAIRRGKPVLFYYWNPTPLMGRYKLIRLEEPPFD 239
Query: 209 ---IHYLPGGEEISGFG----EASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKL 261
L + G A + V + + P++ + + + + N+ + +
Sbjct: 240 AQAWATLTDPANPNPKGSRSLPAKLSIGVSKAFRENYPDLVSVFEQVDLPIDRLNKALAV 299
Query: 262 ILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ + + T LR + ++ K WL D + ++E +
Sbjct: 300 MSEKRTPPREAALTFLRDNREVWKAWLP-------ADIAAKVEATL 338
>gi|238563204|ref|ZP_04610436.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
mallei GB8 horse 4]
gi|254175813|ref|ZP_04882472.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
mallei ATCC 10399]
gi|254203219|ref|ZP_04909581.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
mallei FMH]
gi|254208554|ref|ZP_04914903.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
mallei JHU]
gi|147746264|gb|EDK53342.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
mallei FMH]
gi|147751241|gb|EDK58309.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
mallei JHU]
gi|160696856|gb|EDP86826.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
mallei ATCC 10399]
gi|238521172|gb|EEP84626.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
mallei GB8 horse 4]
Length = 297
Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats.
Identities = 87/284 (30%), Positives = 139/284 (48%), Gaps = 47/284 (16%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWY 84
C +R A GWTDI AT A+ V+L+ LGY+ ++ L+VP+T++ LK +D+F+G W
Sbjct: 59 CRDMRMAGPGWTDIEATNALAGVVLKA-LGYRQSVSNLSVPITYQGLKKGQLDVFLGNWM 117
Query: 85 PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYG 144
P+ + P+++ +I ++ NL AK+ LAV D A G+ S+ D+AKY + GAKIYG
Sbjct: 118 PAQAPLVKPFVDARAIDVLHANLSHAKFTLAVPDYVAAAGVHSFADLAKYAQRFGAKIYG 177
Query: 145 IEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPIN 204
IEPG NQ I M+ + ++L+E+SE +Q+ R
Sbjct: 178 IEPGAPANQNISRMLADKALGPANWQLVESSETGMLTQVERA------------------ 219
Query: 205 SDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILN 264
D+ +C N++RL + + F+V LEN M+ +L
Sbjct: 220 ----------------------------DFASQCANLARLFRQMTFTVDLENGMIAAMLQ 251
Query: 265 NKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
K+ + LR +P L++ WL GV T G + ++
Sbjct: 252 GKRSAVDAAQHALRANPSLVEAWLDGVRTASGAPGLPAVRAALD 295
>gi|114706925|ref|ZP_01439824.1| ABC proline/glycine betaine transporter, periplasmic
substrate-binding protein [Fulvimarina pelagi HTCC2506]
gi|114537475|gb|EAU40600.1| ABC proline/glycine betaine transporter, periplasmic
substrate-binding protein [Fulvimarina pelagi HTCC2506]
Length = 332
Score = 155 bits (392), Expect = 7e-36, Method: Composition-based stats.
Identities = 42/339 (12%), Positives = 101/339 (29%), Gaps = 39/339 (11%)
Query: 1 MYKILAVCLFLT-TFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M +L + + F + A A + ++ W A+ +ILEE ++
Sbjct: 1 MKFLLTSTVIVAGLFGAATAASAQDSCDITISNMNWASAEVMAAIDKIILEEGYDCSASL 60
Query: 60 KLLAVPVTF-RSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVN 117
TF + + D+ W + I EEG+++ AE L G + +
Sbjct: 61 LPGDTMPTFASMTEKQQPDVAPEMWVNQFREQIDSAAEEGTVQFAAEVLTDGGEEGFWIP 120
Query: 118 DVGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
+ + + G ++ + +G
Sbjct: 121 QYFAEAHPEIKTVADAFAHPELFPSAEDPSKGAFHNCPAGWGCQITSANLFDAFDAEEQG 180
Query: 169 FRLIE-ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIH----------------- 210
F L++ S I + +N P W P + +
Sbjct: 181 FVLVDTGSAAGLDGSIAKAFQNEEPWFGYYWAPTAVLGKYPMVKLDFGVEHDPEEWQNCT 240
Query: 211 --YLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQD 268
+ + + ++ VYT+V + ++ +S + N+++ +N+
Sbjct: 241 TVADCEDPQKNAWTKSEVYTIVTPAVAEMGNGVTEYFNTRSWSNDVVNKLLAWKDDNQAT 300
Query: 269 RQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ L ++ W+ + + +++ +
Sbjct: 301 GEDTAYYFLENSENVWSEWVS-------PEAAEKIKAAL 332
>gi|167748585|ref|ZP_02420712.1| hypothetical protein ANACAC_03358 [Anaerostipes caccae DSM 14662]
gi|167651899|gb|EDR96028.1| hypothetical protein ANACAC_03358 [Anaerostipes caccae DSM 14662]
Length = 512
Score = 155 bits (392), Expect = 7e-36, Method: Composition-based stats.
Identities = 38/296 (12%), Positives = 85/296 (28%), Gaps = 31/296 (10%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
++ V + + V A T+ M S+++E+ G T +
Sbjct: 221 LILVLVIAAALTAGAFWGQKKKDTVHIATKPMTEQYVLGEMLSILIEQETGLNTELTQGV 280
Query: 62 -LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP---------------YLEEGSIKLVAE 105
+++ DI+ Y + Y E+ ++ +
Sbjct: 281 GGGTSNIQPAMEKGEFDIYPEYTGTGWNMVLKKSGIYTEDMFGQLKAGYEEKCGMQWLGM 340
Query: 106 NLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKF 164
Y LAV + + + K+ G +G E E + F
Sbjct: 341 YGFNNTYGLAVRRETAEKY--NLRTYSDLKRAAGQLTFGAEYDFFEREDGYDALCKTYGF 398
Query: 165 SLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEA 224
+ + + V + S ++ L + + +
Sbjct: 399 KF------KNTMDMDIGLKYKAIGQKKIDVMNIFTTDGQLSVSDVVVLKD--DKNFYPSY 450
Query: 225 SVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLR 278
S VVR D L++ P + + + + S L ++ + K++ + L+
Sbjct: 451 SCGNVVRDDVLNEHPELKAVFQKLNGILSDELMAKINYEVETKKKEPKEAAEDFLK 506
>gi|51598406|ref|YP_072594.1| glycine betaine, L-proline ABC transporter, binding protein
[Borrelia garinii PBi]
gi|51572977|gb|AAU07002.1| glycine betaine, L-proline ABC transporter, binding protein
[Borrelia garinii PBi]
Length = 294
Score = 155 bits (392), Expect = 7e-36, Method: Composition-based stats.
Identities = 47/263 (17%), Positives = 94/263 (35%), Gaps = 7/263 (2%)
Query: 26 TPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYP 85
V+ W A T + V+ E +GY I + V ++ L +D + W P
Sbjct: 30 KSVKIGYVNWGGETAATNVLKVVFE-KMGYNAEIFSVTTSVMYQYLATGKVDGTVSSWIP 88
Query: 86 SLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGI 145
+ +KF L + + N +G V I S ++ + K+ GI
Sbjct: 89 TADKFYYEKL-KTKFVDLGSNYEGTIQGFVVPSYVP---ISSISELKGKGDKFKNKMIGI 144
Query: 146 EPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINS 205
+ G ++ S + L+ +SE + + + N + W+PH S
Sbjct: 145 DAGAGTQIVTEQALDYYGLSK-EYELVPSSESVMLASLDSAIKRNEWVLVPLWKPHWAFS 203
Query: 206 DLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNN 265
+I L ++ G SV+T+VR + + + + ++ L +M
Sbjct: 204 RYDIKLLDDP-DLIMGGIESVHTLVRLGLENDDLDAYYVFDHFYWNDDLILPLMDRNDKE 262
Query: 266 KQDRQFVGRTMLRTHPDLLKNWL 288
+ + +++K W+
Sbjct: 263 PGKEYRNAVEFVEKNKEIVKMWV 285
>gi|296269117|ref|YP_003651749.1| glycine betaine ABC transporter substrate-binding protein
[Thermobispora bispora DSM 43833]
gi|296091904|gb|ADG87856.1| Substrate-binding region of ABC-type glycine betaine transport
system [Thermobispora bispora DSM 43833]
Length = 317
Score = 155 bits (391), Expect = 8e-36, Method: Composition-based stats.
Identities = 36/290 (12%), Positives = 90/290 (31%), Gaps = 21/290 (7%)
Query: 17 SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGI 76
+ + VR A W A+ A+ + +L+ LGYK +++ ++ +
Sbjct: 29 AGTPSPEGARTVRIALHPWIGYEASAAVVAYLLKRELGYKVEYVRGTEAESWKGFEDGTV 88
Query: 77 DIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKY--MLAVNDVGFA--LGIKSYQDIA 132
D+ + W + + + V+ G + V + + +YQ +
Sbjct: 89 DVIIENWG---HQDLKREYIDQKKVAVSAGPTGNRGVIGWYVPEWMAQRYPELTTYQGLI 145
Query: 133 KYKKELGAKIYGIEPGNEGNQ---RILDMINNNKFSLKGFRLIEASELASFSQIRRDQRN 189
++ + + G D L + E R+ +N
Sbjct: 146 EHYRLFRTEKSGNLGQLLAGDPSFVSHDEALIRNLKLPFKVVYTKGEGELIEAARKATQN 205
Query: 190 NIPAVFLSWEPHPINSDLNIHYLPGGEEI-----------SGFGEASVYTVVRSDYLDKC 238
P + +EP + L + + + + +V + + +
Sbjct: 206 RSPLLMYFYEPQWLFKQLKLVKVNLPPYALGCDKDPERVACDYPPYLLDKIVSARFAENG 265
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
L+KN ++ ++ + + N R + + + ++WL
Sbjct: 266 GKAYELIKNFTWTNEDQSAVAYDMAVNNMSADDAARKWIEANKVVWQSWL 315
>gi|163732477|ref|ZP_02139922.1| glycine betaine/L-proline ABC transporter, substrate binding
protein, putative [Roseobacter litoralis Och 149]
gi|161393837|gb|EDQ18161.1| glycine betaine/L-proline ABC transporter, substrate binding
protein, putative [Roseobacter litoralis Och 149]
Length = 319
Score = 155 bits (391), Expect = 8e-36, Method: Composition-based stats.
Identities = 42/321 (13%), Positives = 91/321 (28%), Gaps = 37/321 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M ++L + A + V+ WT A + ++E +G
Sbjct: 1 MKRVLISATAALAL---CSTPALAAEEVKIGVPSWTGAQAIAHLLGAVVEMRIGGTVEYV 57
Query: 61 LLAVPVTFRSLK--NKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
F+++ ID+ W P+ E F Y++E ++ N V+
Sbjct: 58 PGNNATIFQAMDQGKGDIDVHPDVWLPNQESFTKKYVDEAGTVTLSSNPYEGNQGFCVSQ 117
Query: 119 VGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
+ + +++ PG + + L
Sbjct: 118 DFAKANDISDIADLGRPDVAALMDSDGDGKGEMWIGAPGWASANVNEVKVRDYGL-LDFI 176
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLP----GGEEISGFGEAS 225
I A E ++I+ F ++PH + ++ + E+ F +
Sbjct: 177 EPIRAEESVKTARIKDSITKGEGYAFYCYKPHAVWFMFDVEMVSEPAFDPEKYVMFQPSD 236
Query: 226 ------------------VYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQ 267
V + ++ P I+ + + + I +
Sbjct: 237 DADWYEKSTVASKDALKDVQIAWSNSLPERSPAIAEFFERFSLTADDVSGFAYEISGQGR 296
Query: 268 DRQFVGRTMLRTHPDLLKNWL 288
D V R + +P+ + WL
Sbjct: 297 DPAEVAREWVEANPERVDGWL 317
>gi|312148065|gb|ADQ30724.1| glycine betaine, L-proline ABC transporter,
glycine/betaine/L-proline-binding protein [Borrelia
burgdorferi JD1]
Length = 290
Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats.
Identities = 47/263 (17%), Positives = 95/263 (36%), Gaps = 7/263 (2%)
Query: 26 TPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYP 85
V+ W A T + V+ E +GY I + + ++ L + ID + W P
Sbjct: 26 KSVKIGYVNWGGETAATNVLKVVFE-KMGYNAEIFSVTTSIMYQYLASGKIDGTVSSWVP 84
Query: 86 SLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGI 145
+ +KF L + + N +G V I S ++ + K+ GI
Sbjct: 85 TADKFYYEKL-KTKFVDLGANYEGTIQGFVVPSYVP---ISSISELKGKGAKFKNKMIGI 140
Query: 146 EPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINS 205
+ G ++ S + L+ +SE + + + N + W+PH S
Sbjct: 141 DAGAGTQIVTEQALDYYGLSK-EYELVPSSESVMLASLDSSIKRNEWILVPLWKPHWAFS 199
Query: 206 DLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNN 265
+I +L ++ G SV+T+VR + + + + + L +M
Sbjct: 200 RYDIKFLDDP-DLIMGGIESVHTLVRLGLENDDFDAYYVFDHFYWGDDLILPLMDRNDKE 258
Query: 266 KQDRQFVGRTMLRTHPDLLKNWL 288
+ + +++K W+
Sbjct: 259 PGKEYRNAVEFVEKNKEIVKTWV 281
>gi|83951780|ref|ZP_00960512.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Roseovarius nubinhibens ISM]
gi|83836786|gb|EAP76083.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Roseovarius nubinhibens ISM]
Length = 316
Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats.
Identities = 50/316 (15%), Positives = 107/316 (33%), Gaps = 25/316 (7%)
Query: 1 MYKILAVCLFLTTFSISYARDADS-CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M K + + S +A + + P++ A WT TT + +L+ GYK +
Sbjct: 1 MNKFVLGAVAAMLASAGHAAEMGAVDEPIKLAVNEWTGQHVTTHVAGEMLKAA-GYKVDY 59
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ F++L + + + W ++ A + EG++ + + AK +A
Sbjct: 60 VTAGMMNQFQALADGDLHATLEIWSSNVSDEYAKKIGEGTVVEIGDLGLDAKEGIAYPAH 119
Query: 120 GFA--LGIKSYQDIAKYKKELGAKIY---GIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
G+ +++ + A G + F L +
Sbjct: 120 VEELCPGLPNWEALRDCAGVFAAAETLPAGRLVDYPADWGTPGADRMKGFDLPFKAVPAG 179
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI---------------- 218
SE A +++R P + W+PH S ++ ++ E
Sbjct: 180 SEGALIAELRASTEKKSPLLITFWQPHWAMSAYDVKFVDLPEGNEECFNDPAWGTNPNAT 239
Query: 219 --SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
F + ++ S + +K P + +L N + +V + MM + + + V
Sbjct: 240 HDCDFAPSRIFKASWSGFAEKWPAAAEILTNYQLAVEDQQPMMGKVDVDGMAVEEVVAAW 299
Query: 277 LRTHPDLLKNWLIGVT 292
+ + K + T
Sbjct: 300 MAENEGKWKPVVDAAT 315
>gi|149203449|ref|ZP_01880419.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Roseovarius sp. TM1035]
gi|149143282|gb|EDM31321.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Roseovarius sp. TM1035]
Length = 313
Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats.
Identities = 38/291 (13%), Positives = 86/291 (29%), Gaps = 25/291 (8%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGY 82
DS P+ W+ + + I E +G + S++ + + M
Sbjct: 24 DSEDPIVIPIHNWSSQIVMSNVVGQIFES-MGNNVEYVSTDSQSVYESVRLGDVALEMEV 82
Query: 83 WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG--FALGIKSYQDIAKYKKELGA 140
W + LE+G + ++ + G+ +Q + +
Sbjct: 83 WEGAFGASFRAALEKGGLHDAGDHNAVTREDWWYPMWTKEACPGLPDWQALNECAALFAT 142
Query: 141 KIYGIEP---GNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLS 197
G G + D + + + S A +++I ++ P V +
Sbjct: 143 PETGDAGRFLGGPVDWLKHDQERVDGLGMNFKVVNAGSAAALWAEIGAAEKTKKPIVVFN 202
Query: 198 WEPHPINSDLNIHYLPGG-------------------EEISGFGEASVYTVVRSDYLDKC 238
W P+ + ++ + + +K
Sbjct: 203 WTPNFAEAVWPGEFVEFPTWVEGCDKDPAVGPNPDKTYDCGNPANGYMKKAAWDGMKEKW 262
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
P+ +L I F+ EM KL+ ++ + + L + D+ K W+
Sbjct: 263 PDAYEMLTKISFTNPQIAEMAKLVDIDEMEPEEAATHWLEENGDVWKVWIN 313
>gi|310830349|ref|YP_003965449.1| substrate-binding region of ABC-type glycine betaine transport
system [Ketogulonicigenium vulgare Y25]
gi|308753255|gb|ADO44398.1| substrate-binding region of ABC-type glycine betaine transport
system [Ketogulonicigenium vulgare Y25]
Length = 335
Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats.
Identities = 49/324 (15%), Positives = 94/324 (29%), Gaps = 35/324 (10%)
Query: 1 MYKILAVCLFLTTFSISYA----RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
M K++ + S A +D C V A+ W + ++LEE G +
Sbjct: 1 MTKLVYASVLAIAASAMAAPAFAQDNQECGRVTIAEMNWASAGVAAWVDKIVLEEGFGCQ 60
Query: 57 TNIKLLAVPVTFR-SLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYML 114
+ TF + D+ W +++ + + EG + ++E L G
Sbjct: 61 VELVTGDTMPTFTSMNERGQPDVAPELWINAVKDPLEAAVAEGRLITLSEILTDGGVEGW 120
Query: 115 AVNDVGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFS 165
V ++ + IY G ++
Sbjct: 121 WVPAYFAEANPEITSVEQALQHPDLFPAPENAARGGIYTCPAGWACQITTENLFRALDAE 180
Query: 166 LKGFRLIE-ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISG---- 220
+GF L+E S I P + W P + ++ LP ++
Sbjct: 181 AQGFDLVETGSAAGLDGSIGNAYARGEPWLGYYWAPTAVLGMYDMVMLPFEVDVDEQHFV 240
Query: 221 ---------------FGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNN 265
+ A V+TVV + P L+ + N ++ + N
Sbjct: 241 ECISVVGCPDPQVTAYPVAEVFTVVTQQMAENNPVAVGYLETRAWGNDTVNAILAWQMEN 300
Query: 266 KQDRQFVGRTMLRTHPDLLKNWLI 289
+ + P++ WL
Sbjct: 301 QATNEDAAWWFFENFPEVWGAWLS 324
>gi|223889132|ref|ZP_03623721.1| glycine betaine, L-proline ABC transporter,
glycine/betaine/L-proline-binding protein [Borrelia
burgdorferi 64b]
gi|223885381|gb|EEF56482.1| glycine betaine, L-proline ABC transporter,
glycine/betaine/L-proline-binding protein [Borrelia
burgdorferi 64b]
Length = 290
Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats.
Identities = 48/263 (18%), Positives = 95/263 (36%), Gaps = 7/263 (2%)
Query: 26 TPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYP 85
V+ W A T + V+ E +GY I + + ++ L + ID + W P
Sbjct: 26 KSVKIGYVNWGGETAATNVLKVVFE-KMGYNAEIFSVTTSIMYQYLASGKIDGTVSSWVP 84
Query: 86 SLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGI 145
+ +KF L + + N +G V I S ++ + K+ GI
Sbjct: 85 TADKFYYEKL-KTKFVDLGANYEGTIQGFVVPSYVP---ISSISELKGKGDKFKNKMIGI 140
Query: 146 EPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINS 205
+ G +N S + L+ +SE + + + N + W+PH S
Sbjct: 141 DAGAGTQIVTEQALNYYGLSK-EYELVPSSESVMLASLDSSIKRNEWILVPLWKPHWAFS 199
Query: 206 DLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNN 265
+I +L ++ G SV+T+VR + + + + + L +M
Sbjct: 200 RYDIKFLDDP-DLIMGGIESVHTLVRLGLENDDFDAYYVFDHFYWGDDLILPLMDRNDKE 258
Query: 266 KQDRQFVGRTMLRTHPDLLKNWL 288
+ + +++K W+
Sbjct: 259 PGKEYRNAVEFVEKNKEIVKTWV 281
>gi|325518059|gb|EGC97859.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia sp. TJI49]
Length = 287
Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats.
Identities = 63/296 (21%), Positives = 116/296 (39%), Gaps = 13/296 (4%)
Query: 1 MY---KILAVCLFLTTFSISYARDADSCTPVRFADT-GWTDIAATTAMTSVILEEILGYK 56
M K+L ++S + AD+ ++ GW D AT+ + + I+E+ LGY
Sbjct: 1 MKLLGKLLWTGALSAMVALSASALADTKPTLKIGYVEGWDDSVATSNVAARIIEKKLGYP 60
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ +A V ++ + +D + W P + + + + N AK L V
Sbjct: 61 VQLVPVAAGVMWQGVARGDLDGTLSAWLPVTQGAYWD-QFKTKVVNLGTNFPDAKIGLIV 119
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
A KS D+ K + G +I GI+ G ++ D I + + + L+ +S
Sbjct: 120 PAYVKA---KSIDDLNAEKGDFGGRIVGIDAGAGVMRKTDDAIKSYGLN---YTLMPSSG 173
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
A +++ R N V W PH + + + +L +++ G E V +VV
Sbjct: 174 SAMTAELARSIHANKAVVITGWAPHWMFAKWKLRFLEDPKKVYGEAE-HVDSVVNPALET 232
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVT 292
K + LK ++ + +M I N + + H D + W G
Sbjct: 233 KAKPVVAFLKKFQWKPGEIDSVMLSI-QNGSKPEAAADAWIAAHADRVNAWTEGAQ 287
>gi|126665914|ref|ZP_01736895.1| Substrate-binding region of ABC-type glycine betaine transport
system [Marinobacter sp. ELB17]
gi|126629848|gb|EBA00465.1| Substrate-binding region of ABC-type glycine betaine transport
system [Marinobacter sp. ELB17]
Length = 309
Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats.
Identities = 44/309 (14%), Positives = 90/309 (29%), Gaps = 24/309 (7%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+ K+ + + ADS P+ A WT + I E +G +
Sbjct: 4 LNKLATAAAVSSLVLGATVAQADSKEPIVIATHNWTSQITMAYVIGGIFES-IGDNVSYV 62
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ S++N + I W + K L+ G I V + +
Sbjct: 63 PADSQAVYESVRNGDVTIAHEVWQSTFGKSFNNALDAGGIIDVGTHASATQEEWWYPAYV 122
Query: 121 --FALGIKSYQDIAKYKKELGAKIYGI------EPGNEGNQRILDMINNNKFSLKGFRLI 172
G+ S++ + + G P + Q LD I +
Sbjct: 123 GDLCPGLPSWEALNDCAELFATPGSGGKGRYLDGPMDWHGQETLDRIEA--LDMNFTAKF 180
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE-------------EIS 219
S A ++++ ++N V +W P+ ++ ++ +
Sbjct: 181 AGSSGALWAELESAAKDNRAVVVFNWSPNFTDAGDGGSFVKFPAYTDGCKKADGGDGKCG 240
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+ K P ++ N+ F+ + M L+ + + L
Sbjct: 241 SPPAGWLKKAAYYQMPAKWPTAYKIFNNVSFTKSDIGNMAALVDIDGMTHEAAATKWLAD 300
Query: 280 HPDLLKNWL 288
+ K WL
Sbjct: 301 NEATWKAWL 309
>gi|224532801|ref|ZP_03673417.1| glycine betaine, L-proline ABC transporter,
glycine/betaine/L-proline-binding protein [Borrelia
burgdorferi WI91-23]
gi|224512289|gb|EEF82674.1| glycine betaine, L-proline ABC transporter,
glycine/betaine/L-proline-binding protein [Borrelia
burgdorferi WI91-23]
Length = 290
Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats.
Identities = 48/263 (18%), Positives = 95/263 (36%), Gaps = 7/263 (2%)
Query: 26 TPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYP 85
V+ W A T + V+ E +GY I + + ++ L + ID + W P
Sbjct: 26 KSVKIGYVNWGGETAATNVLKVVFE-KMGYNAEIFSVTTSIMYQYLASGKIDGTVSSWVP 84
Query: 86 SLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGI 145
+ +KF L + + N +G V I S ++ + K+ GI
Sbjct: 85 TADKFYYEKL-KTKFVDLGANYEGTIQGFVVPSYVP---ISSISELKGKGDKFKNKMIGI 140
Query: 146 EPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINS 205
+ G +N S + L+ +SE + + + N + W+PH S
Sbjct: 141 DAGAGTQIVTEQALNYYGLSK-EYELVPSSESVMLASLDSSIKRNEWILVPLWKPHWAFS 199
Query: 206 DLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNN 265
+I +L ++ G SV+T+VR + + + + + L +M
Sbjct: 200 RYDIKFLDDP-DLIMGGIESVHTLVRLGLENDDFDAYYVFDHFYWGDDLILPLMDRNDKE 258
Query: 266 KQDRQFVGRTMLRTHPDLLKNWL 288
+ + +++K W+
Sbjct: 259 PGKEYRNAVEFVEKNKEIVKTWV 281
>gi|167578613|ref|ZP_02371487.1| ABC transporter, periplasmic glycine/betaine-binding protein
[Burkholderia thailandensis TXDOH]
Length = 287
Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats.
Identities = 59/292 (20%), Positives = 110/292 (37%), Gaps = 13/292 (4%)
Query: 1 MY---KILAVCLFLTTFSISYARDADSCTPVRFADT-GWTDIAATTAMTSVILEEILGYK 56
M K++ + + + AD+ ++ GW D AT+ + + I+E LGY
Sbjct: 1 MKFLTKLMGCGVLSMMLAAAAPVQADTKPTLKIGYVEGWDDSVATSNVAARIIETKLGYP 60
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ +A V ++ + +D + W P + + + + N AK L V
Sbjct: 61 VQLVPVAAGVMWQGVARGDLDATLSAWLPVTQGAYWE-QFKTKVVDLGTNFPDAKIGLIV 119
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ A I + K E A+I GI+ G ++ D I + + L+ +S
Sbjct: 120 PNYVKAKTIAD---LNAEKDEFAARIVGIDAGAGVMRKTDDAIKEYGLN---YSLMPSSG 173
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
A +++ R N V W PH + + + +L + + G E V +VV
Sbjct: 174 SAMTAELARSIHANKAVVVTGWAPHWMFAKWKLRFLDDPKRVYGEAE-HVDSVVNPALET 232
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
K + LK ++ + +M I + + H D + WL
Sbjct: 233 KAKPVVAFLKKFQWKPGEIDGVMLSI-QSGSKPAAAADAWIAAHGDRVGEWL 283
>gi|216264817|ref|ZP_03436809.1| glycine betaine, L-proline ABC transporter,
glycine/betaine/L-proline-binding protein [Borrelia
burgdorferi 156a]
gi|221217419|ref|ZP_03588890.1| glycine betaine, L-proline ABC transporter,
glycine/betaine/L-proline-binding protein [Borrelia
burgdorferi 72a]
gi|224534014|ref|ZP_03674598.1| glycine betaine, L-proline ABC transporter,
glycine/betaine/L-proline-binding protein [Borrelia
burgdorferi CA-11.2a]
gi|225549326|ref|ZP_03770299.1| glycine betaine, L-proline ABC transporter,
glycine/betaine/L-proline-binding protein [Borrelia
burgdorferi 94a]
gi|225549863|ref|ZP_03770825.1| glycine betaine, L-proline ABC transporter,
glycine/betaine/L-proline-binding protein [Borrelia
burgdorferi 118a]
gi|215981290|gb|EEC22097.1| glycine betaine, L-proline ABC transporter,
glycine/betaine/L-proline-binding protein [Borrelia
burgdorferi 156a]
gi|221192697|gb|EEE18913.1| glycine betaine, L-proline ABC transporter,
glycine/betaine/L-proline-binding protein [Borrelia
burgdorferi 72a]
gi|224512850|gb|EEF83217.1| glycine betaine, L-proline ABC transporter,
glycine/betaine/L-proline-binding protein [Borrelia
burgdorferi CA-11.2a]
gi|225369554|gb|EEG99005.1| glycine betaine, L-proline ABC transporter,
glycine/betaine/L-proline-binding protein [Borrelia
burgdorferi 118a]
gi|225370184|gb|EEG99624.1| glycine betaine, L-proline ABC transporter,
glycine/betaine/L-proline-binding protein [Borrelia
burgdorferi 94a]
Length = 290
Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats.
Identities = 48/263 (18%), Positives = 95/263 (36%), Gaps = 7/263 (2%)
Query: 26 TPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYP 85
V+ W A T + V+ E +GY I + + ++ L + ID + W P
Sbjct: 26 KSVKIGYVNWGGETAATNVLKVVFE-KMGYNAEIFSVTTSIMYQYLASGKIDGTVSSWVP 84
Query: 86 SLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGI 145
+ +KF L + + N +G V I S ++ + K+ GI
Sbjct: 85 TADKFYYEKL-KTKFVDLGANYEGTIQGFVVPSYVP---ISSISELKGKGDKFKNKMIGI 140
Query: 146 EPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINS 205
+ G +N S + L+ +SE + + + N + W+PH S
Sbjct: 141 DAGAGTQIVTEQALNYYGLSK-EYELVPSSESVMLASLDSSIKRNEWILVPLWKPHWAFS 199
Query: 206 DLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNN 265
+I +L ++ G SV+T+VR + + + + + L +M
Sbjct: 200 RYDIKFLDDP-DLIMGGIESVHTLVRLGLENDDFDAYYVFDHFYWGDDLILPLMDRNDKE 258
Query: 266 KQDRQFVGRTMLRTHPDLLKNWL 288
+ + +++K W+
Sbjct: 259 PGKEYRNAVEFVEKNKEIVKTWV 281
>gi|148653178|ref|YP_001280271.1| glycine betaine ABC transporter substrate-binding protein
[Psychrobacter sp. PRwf-1]
gi|148572262|gb|ABQ94321.1| Substrate-binding region of ABC-type glycine betaine transport
system [Psychrobacter sp. PRwf-1]
Length = 652
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 55/337 (16%), Positives = 113/337 (33%), Gaps = 39/337 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
+L +CL + + + A A PV+F W +++ +I E+ G T++ A
Sbjct: 3 LLLLCLSMWSAPVMAACGAGDGKPVKFGSLTWESGQFISSVLQIIAEDGYGCDTDLVPGA 62
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA- 122
P +L I + W + + GA V
Sbjct: 63 GPALETALAQDDIQVIGEQWVGRSPIMEEAIAANKAAVIGDTLQGGATQGWYVPKYVLDD 122
Query: 123 -LGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNNKF------SLKG 168
G+KSYQD+ KY + G ++ N +K
Sbjct: 123 NPGLKSYQDLPKYAHLFTDPEDPTNARFLNCPTGWTCEIFNTHLLKNTGLTTPNSEGIKF 182
Query: 169 FRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNI-----------------HY 211
+ + A + I P +F W+P + + +
Sbjct: 183 NNVHPGTGAALDAAIASAFEQRRPLLFYYWQPTGLMAKYDFAELAFAKHDELCWDKLLDA 242
Query: 212 LPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQF 271
+ +SGF +++ V + +++ P ++ K ++F+ N + + NK+ +
Sbjct: 243 ESQTDCVSGFPVSNLGIAVSTPFINTYPQLATAFKKVQFAPDTLNGAILQMSENKRSGEA 302
Query: 272 VGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
R L+ +P L + W+ + +++L +N
Sbjct: 303 QARLFLQQNPKLWQQWVT-------PEAAQKLATALN 332
>gi|312149472|gb|ADQ29543.1| glycine betaine, L-proline ABC transporter,
glycine/betaine/L-proline-binding protein [Borrelia
burgdorferi N40]
Length = 290
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 47/263 (17%), Positives = 95/263 (36%), Gaps = 7/263 (2%)
Query: 26 TPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYP 85
V+ W A T + V+ E +GY I + + ++ L + +D + W P
Sbjct: 26 KSVKIGYVNWGGETAATNVLKVVFE-KMGYNAEIFSVTTSIMYQYLASGKVDGTVSSWVP 84
Query: 86 SLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGI 145
+ +KF L + + N +G V I S ++ + K+ GI
Sbjct: 85 TADKFYYEKL-KTKFVDLGANYEGTIQGFVVPSYVP---ISSISELKGKGDKFKNKMIGI 140
Query: 146 EPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINS 205
+ G +N S + L+ +SE + + + N + W+PH S
Sbjct: 141 DAGAGTQIVTEQALNYYGLSK-EYELVPSSESVMLASLDSSIKRNEWILVPLWKPHWAFS 199
Query: 206 DLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNN 265
+I +L ++ G SV+T+VR + + + + + L +M
Sbjct: 200 RYDIKFLDDP-DLIMGGIESVHTLVRLGLENDDFDAYYVFDHFYWGDDLILPLMDRNDKE 258
Query: 266 KQDRQFVGRTMLRTHPDLLKNWL 288
+ + +++K W+
Sbjct: 259 PGKEYRNAVEFVEKNKEIVKTWV 281
>gi|218249260|ref|YP_002374672.1| glycine betaine, L-proline ABC transporter,
glycine/betaine/L-proline-binding protein [Borrelia
burgdorferi ZS7]
gi|226321945|ref|ZP_03797470.1| glycine betaine, L-proline ABC transporter,
glycine/betaine/L-proline-binding protein [Borrelia
burgdorferi Bol26]
gi|218164448|gb|ACK74509.1| glycine betaine, L-proline ABC transporter,
glycine/betaine/L-proline-binding protein [Borrelia
burgdorferi ZS7]
gi|226232535|gb|EEH31289.1| glycine betaine, L-proline ABC transporter,
glycine/betaine/L-proline-binding protein [Borrelia
burgdorferi Bol26]
Length = 290
Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats.
Identities = 48/263 (18%), Positives = 96/263 (36%), Gaps = 7/263 (2%)
Query: 26 TPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYP 85
V+ W A T + V+ E +GY I + + ++ L + ID + W P
Sbjct: 26 KSVKIGYVNWGGETAATNVLKVVFE-KMGYNAEIFSVTTSIMYQYLASGKIDGTVSSWVP 84
Query: 86 SLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGI 145
+ +KF L + + N +G V I S ++ + K+ GI
Sbjct: 85 TADKFYYEKL-KTKFVDLGANYEGTIQGFVVPSYVP---ISSISELKGKGDKFKNKMIGI 140
Query: 146 EPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINS 205
+ G +N S + L+ +SE + + + N + W+PH S
Sbjct: 141 DAGAGTQIVTEQALNYYGLSK-EYELVPSSESVMLASLDSSIKRNEWILVPLWKPHWAFS 199
Query: 206 DLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNN 265
+I +L ++ G SV+T+VR + + + + +S L ++
Sbjct: 200 RYDIKFLDDP-DLIMGGIESVHTLVRLGLENDDFDAYYVFDHFYWSDDLILPLIDKNDKE 258
Query: 266 KQDRQFVGRTMLRTHPDLLKNWL 288
+ + +++K W+
Sbjct: 259 PGKEYRNAVEFVEKNKEIVKTWV 281
>gi|254455130|ref|ZP_05068565.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Octadecabacter antarcticus
238]
gi|198263540|gb|EDY87812.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Octadecabacter antarcticus
238]
Length = 309
Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats.
Identities = 40/310 (12%), Positives = 92/310 (29%), Gaps = 25/310 (8%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
+ A L L+ + ADS P+ W+ + + ILE+ G
Sbjct: 1 LTAGVLALSPLTAFADAHADSTDPIVIPIHNWSSQIVMSNVVGQILEQQ-GAFVEYVTTD 59
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG--F 121
+ S++ + + W + LE+G I V ++ +
Sbjct: 60 SQAVYESVRLGDVTFELEVWEGAFGASYRAALEKGGIVEVTDHNAVTREDWWYPMWTKDA 119
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGN---EGNQRILDMINNNKFSLKGFRLIEASELA 178
G+ ++ + G + + + + S A
Sbjct: 120 CPGLPDWEALNACAAVFATAETGDQGRYLDGPVDWLKHGQERVEALDMNFVVVNAGSAAA 179
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG-------------------EEIS 219
+++I + + P V +W P+ + ++ +
Sbjct: 180 LWAEIGAAEADRRPVVVFNWTPNFAEAVWPGEFVEFPPHEEGCDTDPSVGVNPDALYDCG 239
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+ +K P+ LL+ + F+ EM +L+ ++ + L
Sbjct: 240 NPANGYLKIAAWDGMEEKWPSAYALLEQVSFTNPQIAEMARLVDIDELEPDEAAEVWLEA 299
Query: 280 HPDLLKNWLI 289
+PD+ +W+
Sbjct: 300 NPDVWGSWVN 309
>gi|119947030|ref|YP_944710.1| substrate-binding region of ABC-type glycine betaine transport
system [Psychromonas ingrahamii 37]
gi|119865634|gb|ABM05111.1| Substrate-binding region of ABC-type glycine betaine transport
system [Psychromonas ingrahamii 37]
Length = 310
Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats.
Identities = 48/310 (15%), Positives = 94/310 (30%), Gaps = 25/310 (8%)
Query: 1 MYKI-LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+ K+ A + + A+ DS P+ WT + I E +G +
Sbjct: 4 LKKLATAAAVSSLVLGATVAQAEDSKEPIVIPTHNWTSQITMAYVIGGIFES-IGDNVSY 62
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ S++N + I W + K L+ G I V ++ ++
Sbjct: 63 VPADSQAVYESIRNGDVTIAHEIWQSTFGKSFNNALDAGGIIDVGKHAAVSQEEWWYPAY 122
Query: 120 G--FALGIKSYQDIAKYKKELGAKIYGI------EPGNEGNQRILDMINNNKFSLKGFRL 171
G+ S++ + + G P + Q LD I +
Sbjct: 123 VGELCPGLPSWKALNDCSELFATAGSGGKGRYLDGPMDWHGQETLDRIEA--LDMNFTAK 180
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINS------------DLNIHYLPGGEEIS 219
S A ++++ ++N V +W P+ ++ GG+
Sbjct: 181 FAGSSGALWAELESAAKDNRAVVVFNWSPNFTDAGDGGSFVEFPAYSDGCKVSAGGDGKC 240
Query: 220 GFGEA-SVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLR 278
G A + K P ++ I F+ M L+ + + L
Sbjct: 241 GSPAAGWLKKAAYYQMPAKWPAAYKIFNQISFTKGDIGNMAALVDIDGMSHEEAATKWLA 300
Query: 279 THPDLLKNWL 288
+ K+WL
Sbjct: 301 DNEAKWKSWL 310
>gi|159185902|ref|NP_356822.2| ABC transporter, substrate binding protein (proline/glycine
betaine) [Agrobacterium tumefaciens str. C58]
gi|159141036|gb|AAK89607.2| ABC transporter, substrate binding protein (proline/glycine
betaine) [Agrobacterium tumefaciens str. C58]
Length = 345
Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats.
Identities = 54/347 (15%), Positives = 93/347 (26%), Gaps = 49/347 (14%)
Query: 3 KILAVCLFLTTFSISYARDAD----SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
KI L + + A A+ + + FA W + T + IL + K +
Sbjct: 7 KIALATTALVMGAYAGAARAEGYCSAGKTITFAGIDWESGSFITEVMKEILSKGYDCKVD 66
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
++ N + IF W E G +K V + GA V +
Sbjct: 67 SIPGNSVTLEQATANNDVQIFAEEWI-GRSDVWNKAAEAGQVKSVGKTFVGAAEGWFVPE 125
Query: 119 V-----------GFALGIKSYQD---------IAKYKKELGAKIYGIEPGNEGNQRILDM 158
A +KS ++ + G
Sbjct: 126 YLVKGDPAKGIAAKAPDLKSVDQLSDPKIVELFRDPEEPTKGRFLNCPSGWTCEGVNTAK 185
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ K + A + I P +F W P I + L
Sbjct: 186 LQAYKLDGNYVNFRPGTGTALDAAIAAGYLQGEPMLFYYWSPTAIMGKYKLIQLQEPAYS 245
Query: 219 -----------------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKL 261
F V V S + P I +L+ F +A N +
Sbjct: 246 ESCWKELTSADGKRDAGCAFPSVEVAYGVNSTFAKDAPEIIAILEKATFPLAEINASLAY 305
Query: 262 ILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
+ + + D +T L+T D+ W+ D ++E +
Sbjct: 306 MTDKQVDATAAAKTFLQTKADIWGGWVS-------ADAKARIEAAVK 345
>gi|134098792|ref|YP_001104453.1| glycine betaine transport system permease protein
[Saccharopolyspora erythraea NRRL 2338]
gi|291005854|ref|ZP_06563827.1| glycine betaine transport system permease protein
[Saccharopolyspora erythraea NRRL 2338]
gi|133911415|emb|CAM01528.1| glycine betaine transport system permease protein
[Saccharopolyspora erythraea NRRL 2338]
Length = 298
Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats.
Identities = 50/276 (18%), Positives = 93/276 (33%), Gaps = 10/276 (3%)
Query: 13 TFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLK 72
A + W + A T + V+LEE GY+ L + L
Sbjct: 26 GCGGRQAETGQEAKRITIGYIAWDEDIAVTNLFKVLLEEQ-GYQVTTTELEAGPVYAGLA 84
Query: 73 NKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIA 132
ID+F+ W P I+ + A +AV + I S D+
Sbjct: 85 QGNIDLFLDAWLPETHSDYWKQYSG-QIEDLGVWYDQATLNIAVPNYL--TDINSIADLK 141
Query: 133 KYKKELGAKIYGIEPGNEGNQRI-LDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI 191
+ G I GI+PG ++ + I + + L +S A + + + +
Sbjct: 142 GRSGQFGGVITGIDPGAGLSRITKNNAIPQYQLD---YTLQTSSTTAMLASLEKAINEHK 198
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFS 251
P V W PH + I L G E +++V R+ + P ++ ++K +
Sbjct: 199 PIVVTLWHPHWAYARYPIKDLQDPLGAMGQAE-EIHSVGRAGFSQDFPQVTEMVKKFRLD 257
Query: 252 VALENEMMKLILNN-KQDRQFVGRTMLRTHPDLLKN 286
+ + + + K R +P ++
Sbjct: 258 DQTLSSLENAVNSAPKGQEAAAARKWADENPQVISA 293
>gi|238563941|ref|ZP_00437996.2| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia mallei
GB8 horse 4]
gi|238519635|gb|EEP83105.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia mallei
GB8 horse 4]
Length = 261
Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats.
Identities = 108/232 (46%), Positives = 152/232 (65%), Gaps = 4/232 (1%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
DA +C VRFAD GWTDIAATT + S +L LGY + +VP+TF +K+K ID+F
Sbjct: 31 GDAPTCKAVRFADVGWTDIAATTGLASTML-AGLGYAPTKTIASVPITFAGIKSKQIDVF 89
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL 138
+GYW P+++ IAP+ + G+IK++A NL GAKY LAV D + G+KS+ DI KY +L
Sbjct: 90 LGYWSPTMDPMIAPFTKAGTIKVLAAPNLTGAKYTLAVPDYVYQGGLKSFADIQKYADKL 149
Query: 139 GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
+IYGIEPGN+GN I MI+ N+F L F+L+E+SE ++ R R+ VFL W
Sbjct: 150 NGRIYGIEPGNDGNALIKKMIDGNQFGLGKFKLVESSEAGMLVEVNRAIRDKQWIVFLGW 209
Query: 199 EPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNI 248
EPHP+N + I YL GG+++ +GEA V T DY +CPN+++ + N+
Sbjct: 210 EPHPMNVQMKIDYLSGGDDVFGPNYGEAKVLTATPPDYAARCPNVAKFVSNL 261
>gi|225018511|ref|ZP_03707703.1| hypothetical protein CLOSTMETH_02458 [Clostridium methylpentosum
DSM 5476]
gi|224948712|gb|EEG29921.1| hypothetical protein CLOSTMETH_02458 [Clostridium methylpentosum
DSM 5476]
Length = 512
Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats.
Identities = 35/300 (11%), Positives = 85/300 (28%), Gaps = 33/300 (11%)
Query: 3 KILAVCLFLTTFSISYAR--DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+I A L I + S + A T+ M +++E+ G +
Sbjct: 218 RIFAAVALLLCAGIIGGSLLQSQSKETLHIATKPMTEQYILGEMLDILIEQDTGLNVQLT 277
Query: 61 L---LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIA---------------PYLEEGSIKL 102
+++ D++ Y + Y ++ ++
Sbjct: 278 QGVGGGTSNIQPAMEKGEFDLYPEYTGTGWNMVLKQSGLYTEDLFDTMQGEYQDKLGVQW 337
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINN 161
V Y L V + + + K+ I+G E E + +
Sbjct: 338 VGMYGFNNTYGLVVRREIAEKY--NLKTYSDLKRVADQLIFGAEYDFFEREDGYNALCDT 395
Query: 162 NKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
+ + + V + + S ++ L + S +
Sbjct: 396 YGLKF------KETMDLDIGLKYQAINQGKIDVMVIFTTDGQLSVSDVVVLED--DKSFY 447
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
V+R+ L + P + +L+ + + +M + + +++ + V LR
Sbjct: 448 PSYLCGNVIRTQVLQEHPELEAVLRKLSGAITDESMAQMNYAVESEEKEPREVAEQFLRN 507
>gi|302524981|ref|ZP_07277323.1| glycine betaine transport system permease [Streptomyces sp. AA4]
gi|302433876|gb|EFL05692.1| glycine betaine transport system permease [Streptomyces sp. AA4]
Length = 302
Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats.
Identities = 59/294 (20%), Positives = 99/294 (33%), Gaps = 15/294 (5%)
Query: 3 KILAVCLFLTTFSISYAR---------DADSCTPVRFADTGWTDIAATTAMTSVILEEIL 53
+ILAV +T A ++ V W + A T++ +LEE
Sbjct: 9 RILAVGAAVTALVGLTAACGGRESQSGNSQEAKSVTIGYINWDEDVALTSLYQAVLEEK- 67
Query: 54 GYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
GYK ++L V + L +D+F+ W P+ K + ++ + A
Sbjct: 68 GYKVKTQMLDVGPIYAGLAKGDVDLFLDSWLPATHKQYWDQY-QNQLEDLGVWYDNATLN 126
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
LAV D + S D+ G KI GIE + L
Sbjct: 127 LAVPDYVSD--VNSIADLKDKASMFGGKITGIEASAGETGIVQKDAIPQYGLDGAMTLQN 184
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+S A + + + P V W PH S + L + G GE ++ + R
Sbjct: 185 SSTTAMLAALDSSIKAKKPIVVTLWHPHWAYSRYQLKDLKDPKGAMGKGE-QIHALGRKG 243
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNN-KQDRQFVGRTMLRTHPDLLKN 286
+ P ++ + K +K S A + I K + + H +
Sbjct: 244 FEKDFPALAGVAKKLKMSDADLGSLEDAIQKAPKGQEKAAAKQWADQHKQFVDQ 297
>gi|254453246|ref|ZP_05066683.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Octadecabacter antarcticus
238]
gi|198267652|gb|EDY91922.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Octadecabacter antarcticus
238]
Length = 323
Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats.
Identities = 46/311 (14%), Positives = 96/311 (30%), Gaps = 24/311 (7%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
L + + + + P++ A WT +T + +L GY
Sbjct: 13 LGTAVIAMAGAATAVELGATDEPIKLAINEWTGQHISTHIGGELLRAA-GYDVEYITAGN 71
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA-- 122
+L + I + W ++ E G I + +
Sbjct: 72 YPQHTALADGDIHATLEVWMNNVGDIYPQMKEAGQIVDIGPLGLTTREGWMYPKHMEETC 131
Query: 123 LGIKSYQDIAKYKKELGAKIY---GIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
G+ S++ + + E+ G G + +L+ + SE A
Sbjct: 132 PGLPSWEALVACQAEMITAETFPKGRILGYPADWGTRSADIIESLALEYKAVPAGSEGAL 191
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG-------EEISGFGEASVY----- 227
+++R P V + W PH I S+++ ++ + + +
Sbjct: 192 VAELRSSIAQKTPLVMMFWAPHWIFSEVDAGWVDLPAYDPACDTDPTWGPNPNATGDCGV 251
Query: 228 ------TVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHP 281
V S + +K P +L ++ A + MMK I + + + V + +
Sbjct: 252 EAPVTMKVAWSGFEEKWPAAWEILSALQIDTAQQEAMMKAIDQDGEAIEDVVAAWIDENK 311
Query: 282 DLLKNWLIGVT 292
D W+ T
Sbjct: 312 DTWTPWVETAT 322
>gi|209552026|ref|YP_002283942.1| substrate-binding region of ABC-type glycine betaine transporter
[Rhizobium leguminosarum bv. trifolii WSM2304]
gi|209539619|gb|ACI59550.1| Substrate-binding region of ABC-type glycine betaine transport
system [Rhizobium leguminosarum bv. trifolii WSM2304]
Length = 318
Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats.
Identities = 37/313 (11%), Positives = 92/313 (29%), Gaps = 27/313 (8%)
Query: 1 MYKILAVCLFLTTFSISY---ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M +++ + + + A +S ++ W+ +A T + +VIL GYK
Sbjct: 1 MKRLMTSAIMALSVMTASPSMAFQPESDQTIKLMIADWSSMAIDTEILNVIL-STYGYKV 59
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+ + + + I + W + + + L G I + E AK
Sbjct: 60 EKVVADDTARYPGFEAGDLTIALETWQTTQNEVFSASLATGKILDMGELGPHAKEDWWYP 119
Query: 118 DVGFA--LGIKSYQDIAKYKKELGAKIY---GIEPGNEGNQRILDMINNNKFSLKGFRLI 172
G+ ++ + + G G + D L +
Sbjct: 120 AYMEEKCPGLPDWKALKNCAEAFSTPETAPKGRYLGAPVSWGGYDEERIKALDLPFEVVH 179
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE--------------- 217
++ A F++++ P + +EPH + ++
Sbjct: 180 AGTDAAMFAELKSAYERKAPIILWVYEPHWAPTVFKGSFIKFPAYEPACYTDAAWGVNPK 239
Query: 218 ---ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGR 274
E + + +D P + + +++ + N + + V
Sbjct: 240 AAYDCSKPEGWIKKMAWADGEKVWPCAYDITRKFTIDGKELGQLVYEVDVNGRSVEEVAM 299
Query: 275 TMLRTHPDLLKNW 287
+ + ++W
Sbjct: 300 EWAKKNEATWRSW 312
>gi|255308260|ref|ZP_05352431.1| putative osmoprotectant ABC transporter,substrate-binding/permease
protein [Clostridium difficile ATCC 43255]
Length = 511
Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats.
Identities = 43/297 (14%), Positives = 86/297 (28%), Gaps = 31/297 (10%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
IL + + SY + + A T+ M +++E+ G I
Sbjct: 221 ILGSLILIVIIFTSYLFNPSKTQTIHIATKPMTEQYILGEMLDILIEKNTGLNVEITQGV 280
Query: 62 -LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP---------------YLEEGSIKLVAE 105
+++N DI+ Y + Y + ++
Sbjct: 281 GGGTSNIQPAMENGEFDIYPEYTGTGWNMVLKKNELYTESMFSKLQSEYKTKLKMQWTGM 340
Query: 106 NLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKF 164
Y LAV + ++I K +G E E + N
Sbjct: 341 YGFSNSYALAVRKEVADKY--NLKNITDLKDVSSKLTFGAEYDFYEREDGYTPLCNTYGL 398
Query: 165 SLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEA 224
+ K + + V + S ++ L + + +
Sbjct: 399 NFKD------TVDLDIGLKYQAINEGKIDVMPIFTTDGQYSVSDVVVLKD--DKNFYPSY 450
Query: 225 SVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
VVRS+ L++ P +S++ K + + +M + NN + + V R L
Sbjct: 451 QCGNVVRSEVLEENPELSKVFKMVGDILTDKEMAKMNYDVENNNLEPREVAREFLNK 507
>gi|134292131|ref|YP_001115867.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia vietnamiensis G4]
gi|134135288|gb|ABO56402.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia vietnamiensis G4]
Length = 287
Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats.
Identities = 57/272 (20%), Positives = 109/272 (40%), Gaps = 12/272 (4%)
Query: 1 MY---KILAVCLFLTTFSISYARDADSCTPVRFADT-GWTDIAATTAMTSVILEEILGYK 56
M K+L ++S + AD+ ++ GW D AT+ + + ++E+ LGY
Sbjct: 1 MKLFGKLLWAGAVSAMVTLSASAIADTKPTLKIGYVEGWDDSVATSNVAARVIEKKLGYH 60
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ +A + ++ + +D + W P + + + N AK L V
Sbjct: 61 VQLVPVAAGIMWQGVARGDLDATLSAWLPVTHGSYWSEY-KTKVVDLGVNFPDAKIGLIV 119
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
D A KS D+ K G +I GI+ G ++ + I + + L+ +S
Sbjct: 120 PDYVKA---KSIDDLNAEKSSFGGRIVGIDAGAGVMRKTDEAIKSYGL---SYTLMPSSG 173
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
A +++ R N P + W PH + + + +L +++ G G V +VV
Sbjct: 174 SAMTAELSRSVGANKPVIVTGWAPHWMFAKWKLRFLDDPKKVFG-GAEHVDSVVNPQLET 232
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQD 268
K + LK ++ + +M I N +
Sbjct: 233 KAKPVVVFLKKFQWKPGEIDSVMLAIQNGSKP 264
>gi|326798241|ref|YP_004316060.1| glycine/betaine ABC transporter periplasmic protein
[Sphingobacterium sp. 21]
gi|326549005|gb|ADZ77390.1| ABC-type glycine betaine transport, periplasmic subunit
[Sphingobacterium sp. 21]
Length = 274
Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats.
Identities = 50/263 (19%), Positives = 102/263 (38%), Gaps = 12/263 (4%)
Query: 26 TPVRFADT-GWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWY 84
+ GW + A T + L GY ++ A + F S+ N D +M W
Sbjct: 17 KRISLGVVSGWAEGEAMTLVAQEAL-NRAGYHVVLQKAAPNLLFASMDNGDTDAYMDVWL 75
Query: 85 PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYG 144
P I +GA L V D I S ++ K+K + G ++ G
Sbjct: 76 PKTHG--DKVARFSKIHSTGIIYEGALLGLVVPDYV---TINSIDELNKHKNQFGGRMIG 130
Query: 145 IEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPIN 204
IE G+ ++ + + +S +A S++++ R + W+PH +
Sbjct: 131 IERGSGIAAATDRVLTEYNLD---YVQLNSSTVAMISELQKAVREKRWIIVTGWKPHWMF 187
Query: 205 SDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILN 264
+ ++ +L +++ G E + VR + P + + I F ++++ +
Sbjct: 188 ARFDLKFLKDPKQVYGEAE-RIEAYVREGLDKEFPEVYGFFQQISFDDETMSDLLAKMEE 246
Query: 265 NKQDRQFVGRTMLRTHPDLLKNW 287
+K +++ + + H DL+ W
Sbjct: 247 SK-NQKETAKQWVDEHQDLVNTW 268
>gi|86358107|ref|YP_469999.1| putative amino acid ABC transporter, substrate-binding protein
[Rhizobium etli CFN 42]
gi|86282209|gb|ABC91272.1| putative amino acid ABC transporter, substrate-binding protein
[Rhizobium etli CFN 42]
Length = 332
Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats.
Identities = 56/339 (16%), Positives = 105/339 (30%), Gaps = 39/339 (11%)
Query: 1 MYKILAVCLFLTTFSISYAR-DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M +L +F F + A +A C V A+ W +ILE+ G I
Sbjct: 1 MKTLLISAVFAAAFFSATAPAEAAECGKVSIAEMKWASAGIAANFDKIILEKGYGCSVTI 60
Query: 60 KLLAVPVTF-RSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVN 117
TF + DI YW S+ + + G + AE L GA +
Sbjct: 61 VDGDTLPTFASMNEKNTPDIASEYWINSVRALLDQAINTGRLVQGAEILADGAVEGWFIP 120
Query: 118 DVGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
+K + +Y + KG
Sbjct: 121 KFIADANPDIRSVEDALKHPELFPAEDNPSKGAVYNCPADWSCQISTTSLFKALAADKKG 180
Query: 169 FRLIE-ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG------------ 215
F L+E S + I R N I + W P I ++ L G
Sbjct: 181 FELVETGSPQRLDASIARAFDNKIGWLGYYWAPTAILGKYDMTRLSFGVSHNKAEWDRCT 240
Query: 216 -------EEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQD 268
+++ + + +T++ + + ++ LK K+ N+++ N++
Sbjct: 241 AVAGCIRPQLNSYPVSRAFTLMTRSFASRAGPVTTYLKTRKWDNETINQVLAWQDENRES 300
Query: 269 RQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ LR + +L W+ D + +++ +
Sbjct: 301 NEDAAIYFLRNYENLWMKWVP-------ADVAEKVKASL 332
>gi|126740665|ref|ZP_01756351.1| ABC transporter binding protein [Roseobacter sp. SK209-2-6]
gi|126718180|gb|EBA14896.1| ABC transporter binding protein [Roseobacter sp. SK209-2-6]
Length = 315
Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats.
Identities = 48/309 (15%), Positives = 91/309 (29%), Gaps = 24/309 (7%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
+LA T S S A A+S P+R W+ T + IL+E GYK
Sbjct: 7 VLAALTLATAVSTSSAWAAESSDPIRLTLHDWSGQLINTKIMGSILQEA-GYKVEYVQAD 65
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA- 122
F LK + + M W + + + G + E A
Sbjct: 66 YIAQFAGLKTGDLHLAMEIWETTGREALDEATASGKVVNAGETGLMAIEEWWFPAYMKDH 125
Query: 123 -LGIKSYQDIAKYKKELGAKI---YGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
G+ +Q + + +E YG G D L + ++ A
Sbjct: 126 CPGLPDWQALKECSEEFSTAETSPYGRYVGGPVTWGGFDEERVEALELDFEVVHAGTDAA 185
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE------------------ISG 220
F+++ + P V + PH + ++ G
Sbjct: 186 LFAELESAYQRKDPIVLWVYVPHWAPAKYEGEFVEFPPYSAECYADPSVGVNPDMAYDCG 245
Query: 221 FGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
++ + + P ++++ + S + M+ + V T + +
Sbjct: 246 KPRGPIWKAAWAGLPETWPGAYEIIQDYRISNEEMSAMVGKADLEGVEIDTVVSTWMSEN 305
Query: 281 PDLLKNWLI 289
D W+
Sbjct: 306 KDRWSGWIN 314
>gi|298292115|ref|YP_003694054.1| substrate-binding region of ABC-type glycine betaine transporter
[Starkeya novella DSM 506]
gi|296928626|gb|ADH89435.1| Substrate-binding region of ABC-type glycine betaine transport
system [Starkeya novella DSM 506]
Length = 284
Score = 153 bits (385), Expect = 4e-35, Method: Composition-based stats.
Identities = 56/272 (20%), Positives = 106/272 (38%), Gaps = 9/272 (3%)
Query: 18 YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGID 77
+ A W+D T + +LE+ GY I L+ ++++ D
Sbjct: 22 MGAAQAEKKDLTIAYVEWSDAVVATNIIKTVLEDK-GYTVKIVPLSGAAMWQAVATGEAD 80
Query: 78 IFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKE 137
+ W P+ +G + + N+ GAK AV I + +DI K +
Sbjct: 81 AMVAAWLPATHAAY-NAKLKGKVVDLGPNVTGAKIGWAVPTYV---DIATIEDIKKDPAK 136
Query: 138 LGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLS 197
G K+ GI+PG + I + +L+E S+ + ++ P V +
Sbjct: 137 FGGKVIGIDPGAGLMKASEKAIKDYDL---PVKLVEGSDATMVAALKDAAAKKEPIVVTT 193
Query: 198 WEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENE 257
W PH + ++ ++ YL + + G GE +V TVV + ++ P ++L N S+ E +
Sbjct: 194 WTPHWMFAEWDLKYLADPKGVFG-GEETVNTVVSTKLKEEAPEAYKILDNFSLSLDDEQK 252
Query: 258 MMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+M D + + + + W
Sbjct: 253 VMVENNKPGADPAATAKAWVAANKAKVDAWTK 284
>gi|73538638|ref|YP_299005.1| substrate-binding region of ABC-type glycine betaine transport
system [Ralstonia eutropha JMP134]
gi|72121975|gb|AAZ64161.1| Substrate-binding region of ABC-type glycine betaine transport
system [Ralstonia eutropha JMP134]
Length = 287
Score = 153 bits (385), Expect = 4e-35, Method: Composition-based stats.
Identities = 58/294 (19%), Positives = 110/294 (37%), Gaps = 13/294 (4%)
Query: 1 MY---KILAVCLFLTTFSISYARDADSCTPVRFADT-GWTDIAATTAMTSVILEEILGYK 56
M K+L + S D+ ++ GW D ATT + + I+E+ LGY
Sbjct: 1 MKLLSKLLFTGAASVMLTWSAFALGDTKPTLKIGYVEGWDDSVATTNVAARIIEKKLGYP 60
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ LA V ++ + +D + W P + + + + N A+ L V
Sbjct: 61 VQLVPLAAGVMWQGVARGDLDATLSAWLPVTQGAYWD-QFKTKVVNLGPNFTEARIGLIV 119
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
++ KS D+ K +I GI+ G ++ D I + + L+ +S
Sbjct: 120 P---ASVTAKSIDDLNAQKAAFEGRIVGIDAGAGVMRKASDAIKSYGL---SYSLMPSSG 173
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
A +++ R N P + W PH + + + +L +++ G E V +V
Sbjct: 174 SAMTAELARAMNANKPVIVTGWAPHWMFAKWKLRFLDDPKKVFGDAE-HVDNIVNPGLEA 232
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIG 290
K + LK ++ + +M I + + + + WL G
Sbjct: 233 KAKPVVVFLKKFQWKPGEIDSVMLAI-QGGTKPDAAADAWIAANAERVNAWLEG 285
>gi|159039028|ref|YP_001538281.1| substrate-binding region of ABC-type glycine betaine transport
system [Salinispora arenicola CNS-205]
gi|157917863|gb|ABV99290.1| Substrate-binding region of ABC-type glycine betaine transport
system [Salinispora arenicola CNS-205]
Length = 303
Score = 153 bits (385), Expect = 4e-35, Method: Composition-based stats.
Identities = 51/262 (19%), Positives = 93/262 (35%), Gaps = 6/262 (2%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMG 81
A + W + A + + S +L + G++ ++K + V ++ L ID+F+
Sbjct: 38 AAVEKKITIGYMAWDEAVAASYLWSDLL-QKQGFEVDLKNVEAGVVYQGLAAGDIDLFLD 96
Query: 82 YWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAK 141
W P + ++ + A +AV G+ S D+A +
Sbjct: 97 GWLPQTHASYWERYSD-DLEKIGVWYDNASLSIAVPQYV--TGVDSLADLAGNADTFDGE 153
Query: 142 IYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPH 201
I GIEPG D + L +S A + + ++ P V W PH
Sbjct: 154 IIGIEPGAGLTAATQDKVIPEYGMTGKLDLKTSSTPAMLAALDGAIKDEKPIVVTLWHPH 213
Query: 202 PINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKL 261
+ + L + G E + T+ R + P + +LK S + L
Sbjct: 214 WAYAKYQLKDLADPKGTLGQAE-EITTLARKGFSADFPEATEMLKKFTMSDDQLGSLEDL 272
Query: 262 ILNNKQDRQF-VGRTMLRTHPD 282
+ N D + L+ +PD
Sbjct: 273 MFNVHADNEEKAVEEWLKANPD 294
>gi|255657167|ref|ZP_05402576.1| putative osmoprotectant ABC transporter,substrate-binding/permease
protein [Clostridium difficile QCD-23m63]
gi|296451995|ref|ZP_06893710.1| glycine betaine/proline ABC superfamily ATP binding cassette
transporter, binding protein [Clostridium difficile
NAP08]
gi|296879609|ref|ZP_06903588.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Clostridium difficile NAP07]
gi|296259186|gb|EFH06066.1| glycine betaine/proline ABC superfamily ATP binding cassette
transporter, binding protein [Clostridium difficile
NAP08]
gi|296429412|gb|EFH15280.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Clostridium difficile NAP07]
Length = 511
Score = 153 bits (385), Expect = 4e-35, Method: Composition-based stats.
Identities = 44/297 (14%), Positives = 88/297 (29%), Gaps = 31/297 (10%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
IL + + T SY + + A T+ M +++E+ G K I
Sbjct: 221 ILGSLILIVTIFTSYLFNPSKTQTIHIATKPMTEQYILGEMLDILIEKNTGLKVEITQGV 280
Query: 62 -LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP---------------YLEEGSIKLVAE 105
+++N DI+ Y + Y + ++
Sbjct: 281 GGGTSNIQPAMENGEFDIYPEYTGTGWNMVLKKNELYTENMFSKLQSEYKNKLKMQWTGM 340
Query: 106 NLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKF 164
Y LAV + ++I+ K +G E E + N
Sbjct: 341 YGFSNSYALAVRKEVADKY--NLKNISDLKDVSSKLTFGAEYDFYEREDGYTPLCNTYGL 398
Query: 165 SLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEA 224
+ K + + V + S ++ L + + +
Sbjct: 399 NFKD------TVDLDIGLKYQAINEGKIDVMPIFTTDGQYSVSDVIVLKD--DKNFYPSY 450
Query: 225 SVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
VVR + L++ P +S++ K + + +M + NN + + V R L
Sbjct: 451 QCGNVVRLEVLEENPELSKVFKMVGDILTDKEMAKMNYDVENNNLEPREVAREFLNK 507
>gi|254469277|ref|ZP_05082682.1| ABC transporter binding protein [Pseudovibrio sp. JE062]
gi|211961112|gb|EEA96307.1| ABC transporter binding protein [Pseudovibrio sp. JE062]
Length = 313
Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats.
Identities = 45/307 (14%), Positives = 95/307 (30%), Gaps = 24/307 (7%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP 65
+V L + + D +S P++ W+ TT + +L+ GY
Sbjct: 8 SVALVMALSISAANADVESLDPIKITTHDWSGQIITTTIMGEVLKRA-GYNIEYVQADYI 66
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA--L 123
F LK + + M W + + + +E G++ + E+ A
Sbjct: 67 AQFAGLKTGDLHVAMEIWETTGREAMDEAIETGNVVSLGESGMIAIEEWWYPSYMEDVCP 126
Query: 124 GIKSYQDIAKYKKELGAKIY---GIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
G+ ++ + +E G G D L + ++ A F
Sbjct: 127 GLPDWEALKDCAEEFSTAETAPLGRYLGGPVTWGGFDEERVEALELDFEVVHAGTDAALF 186
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE------------------ISGFG 222
+++ + P + +EPH + + ++ G
Sbjct: 187 AELESAYQRKAPIILWLYEPHWAPAKYDGKFIEFPPYSAACYQDATTGVNTSAAYDCGKP 246
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPD 282
++ V + K P ++ + N S A + M+ + Q V L + +
Sbjct: 247 TGPIWKVAWAGLGQKWPGAAQAISNFHVSNAEMSAMISKVDLEGQAVDAVVGEWLSANEE 306
Query: 283 LLKNWLI 289
+ WL
Sbjct: 307 RWQGWLK 313
>gi|289523666|ref|ZP_06440520.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289503358|gb|EFD24522.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 307
Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats.
Identities = 43/311 (13%), Positives = 89/311 (28%), Gaps = 42/311 (13%)
Query: 1 MYKILAVCLFLTT-------FSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL 53
M K+ + FS + +S V +T+ M + ++E
Sbjct: 3 MRKLSLAIFLVLFAISQVFCFSSTSYGAGESAGKVVVGSKNFTEQMVVGHMVAELIEAHT 62
Query: 54 GYKTNIK--LLAVPVTFRSLKNKG----IDIFMGYWYPSLEKFI---------------- 91
K K L V F +LK IDI++ Y L +
Sbjct: 63 DLKVERKLHLGGTNVCFEALKRGSANNGIDIYVEYTGTGLVNILQMESKTDPQEVYEIVK 122
Query: 92 APYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGI-EPGNE 150
+ + ++ + Y LAV + Q + K ++G E
Sbjct: 123 KEFEDRWNLIWLEPWGFNNTYTLAVKEEFAKEN--DIQTFSDLGKLADKLVFGCTMEFAE 180
Query: 151 GNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIH 210
+ +S K + + N++ V ++ + +
Sbjct: 181 RSDGYPGFKRAYGYSFKEVK------AMDPGLMYSAIDNDLVQVISAFATDGLLVAHKLK 234
Query: 211 YLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQD 268
L + +V + L + P I +L + + ++ ++ +D
Sbjct: 235 ILKDDKNFF--PPYFAAPLVNGEVLKRYPQIGDVLNRLANSITDEDMQQLNYMVDGEGRD 292
Query: 269 RQFVGRTMLRT 279
V R+ L+
Sbjct: 293 AAEVARSFLKE 303
>gi|172056534|ref|YP_001812994.1| substrate-binding region of ABC-type glycine betaine transport
system [Exiguobacterium sibiricum 255-15]
gi|171989055|gb|ACB59977.1| Substrate-binding region of ABC-type glycine betaine transport
system [Exiguobacterium sibiricum 255-15]
Length = 527
Score = 152 bits (384), Expect = 6e-35, Method: Composition-based stats.
Identities = 38/305 (12%), Positives = 86/305 (28%), Gaps = 29/305 (9%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--I 59
KI + + A + +T+ M + ++E+ + +
Sbjct: 232 KKIAIAAIVFLLIGGTVAYSFLKTDKIVIGSKNFTEQLILGNMLADLIEDKTDLEVERQL 291
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPY----------------LEEGSIKLV 103
L V + +L+ ID ++ Y L + E+ + ++
Sbjct: 292 NLGGTKVAYGALETGEIDAYVEYTGTLLIDVLKQKLETDPEAVYKKVGKMIPEKSQVDVL 351
Query: 104 AENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK 163
Y LA+ + + ++ I G + +
Sbjct: 352 EPIGFNNTYALAMTK--EDIKKYDLKTVSDMAGVSNRLILGSTIEFANREDGYLGLKEKY 409
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+K + N V S+ + ++ L + F
Sbjct: 410 PDMKFKDVQPVDGGLR----YTALTNGKTNVIDSFSTDGLLKKFDLTVLED--DKEFFPP 463
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTHP 281
+VR + L++ P + +L + K + E+ K+ + V R L
Sbjct: 464 YYAVPIVRQETLEEHPELKEVLNLLKDKITDKKMQELNFKADVEKERPEDVAREFLIE-E 522
Query: 282 DLLKN 286
+L+K
Sbjct: 523 ELIKK 527
>gi|325970475|ref|YP_004246666.1| glycine/betaine ABC transporter periplasmic protein [Spirochaeta
sp. Buddy]
gi|324025713|gb|ADY12472.1| ABC-type glycine betaine transport, periplasmic subunit
[Spirochaeta sp. Buddy]
Length = 298
Score = 152 bits (383), Expect = 7e-35, Method: Composition-based stats.
Identities = 42/295 (14%), Positives = 85/295 (28%), Gaps = 30/295 (10%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLL 62
+ + L L +I + + + + M S ++E K + L
Sbjct: 8 ITLVLTLALAAILFFTSCAKDDTITIGSKDFGENIVIAEMLSQLIEAHTPLKVNRKLNLG 67
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIA----------------PYLEEGSIKLVAEN 106
V F ++KN IDI+ Y L + +L++ I +
Sbjct: 68 GTFVNFNAIKNGQIDIYPEYTGTGLTAHLKMDVVNDPEQSYSIVSEEFLKQWDIVWLEPF 127
Query: 107 LQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFS 165
Y LAV + + + G ++G E + ++
Sbjct: 128 GFNNTYTLAVTPEVYEQYK--VETYSDLIPYAGELVFGAEHEFFDRQDGFDGLVEVYGL- 184
Query: 166 LKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEAS 225
+ + S + V ++ N+ L
Sbjct: 185 ----QFKGEPMKLNASLKYQAIGRGDMDVTDAFATDGPIKQYNLKILEDDLGFF--PPYH 238
Query: 226 VYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
+VR + LDK P + +L + K A ++ L+ + + V L+
Sbjct: 239 AAPIVRKEVLDKHPELKTVLNMLGGKLDDATMTDLNYLVDVEGESVENVATEFLK 293
>gi|326332737|ref|ZP_08198998.1| putative glycine betaine-binding lipoprotein [Nocardioidaceae
bacterium Broad-1]
gi|325949436|gb|EGD41515.1| putative glycine betaine-binding lipoprotein [Nocardioidaceae
bacterium Broad-1]
Length = 317
Score = 152 bits (383), Expect = 7e-35, Method: Composition-based stats.
Identities = 50/288 (17%), Positives = 100/288 (34%), Gaps = 18/288 (6%)
Query: 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDI 78
A DA +C + A W A+ + + E LG K + K L V+++ +D+
Sbjct: 28 AADAGNCGDLNMAVNPWVGYEASAYVVGYVAETELGCKVDYKELKEDVSWQGFGTGDVDV 87
Query: 79 FMGYWY--PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG-----IKSYQDI 131
+ W +KF+ +GS N V K+
Sbjct: 88 VIEDWGHPDLEKKFVKDKGGDGSATDFGPNGNQGIIHWYVPPWLAEAHPDILDYKNLNKY 147
Query: 132 AKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI 191
AK + G G + + D N L + SE AS ++ + +
Sbjct: 148 AKQFATSESDGKGQFLGADPSYVQFDEAIVNNLDLNFKVVFSGSEAASIQAFKKAEADKE 207
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEE-----------ISGFGEASVYTVVRSDYLDKCPN 240
+ +EP + +++ + + + E + VV + + + +
Sbjct: 208 FLIGYFYEPQGLFAEVPLKAVKLPPYTEGCQDVPAEVACDYPETELKKVVSTSWAESDSS 267
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
L+KN ++ +N + K I ++ D + + + +PD + WL
Sbjct: 268 AVDLVKNFTWTNDDQNLVAKYISTDQMDPEEAAKKWVEDNPDKVDAWL 315
>gi|255102361|ref|ZP_05331338.1| putative osmoprotectant ABC transporter,substrate-binding/permease
protein [Clostridium difficile QCD-63q42]
Length = 511
Score = 152 bits (383), Expect = 7e-35, Method: Composition-based stats.
Identities = 43/297 (14%), Positives = 86/297 (28%), Gaps = 31/297 (10%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
IL + + T SY + + A T+ M +++E+ G I
Sbjct: 221 ILGSLILIATIFTSYLFNPSKTQTIHIATKPMTEQYILGEMLDILIEKNTGLNVEITQGV 280
Query: 62 -LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP---------------YLEEGSIKLVAE 105
++KN DI+ Y + Y + ++
Sbjct: 281 GGGTSNIQPAMKNGEFDIYPEYTGTGWNMVLKKNELYTESMFSKLQSEYKTKLKMQWTGM 340
Query: 106 NLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKF 164
Y LAV + ++I K +G E E + N
Sbjct: 341 YGFSNSYALAVRKEVADKY--NLKNITDLKDVSSKLTFGAEYDFYEREDGYTPLCNTYGL 398
Query: 165 SLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEA 224
+ + + + V + S ++ L + + +
Sbjct: 399 NF------KDTVDLDIGLKYQAINEGKIDVMPIFTTDGQYSVSDVVVLKD--DKNFYPSY 450
Query: 225 SVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
VVR + L++ P +S++ K + + +M + NN + + V R L
Sbjct: 451 QCGNVVRLEVLEENPELSKVFKMVGDILTDKEMAKMNYDVENNNLEPREVAREFLNK 507
>gi|110635306|ref|YP_675514.1| substrate-binding region of ABC-type glycine betaine transport
system [Mesorhizobium sp. BNC1]
gi|110286290|gb|ABG64349.1| Substrate-binding region of ABC-type glycine betaine transport
system [Chelativorans sp. BNC1]
Length = 343
Score = 152 bits (383), Expect = 7e-35, Method: Composition-based stats.
Identities = 40/301 (13%), Positives = 87/301 (28%), Gaps = 33/301 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-- 58
M K + + + + A A + +T+ + + LE G
Sbjct: 51 MRKSALIAASIVSLAFGMAAHAA--DKIVVGTKNFTEQYILGEIYAGALENA-GIPVERK 107
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPS----------------LEKFIAPYLEEGSIKL 102
I L + ++L + ID++ Y + + Y + +
Sbjct: 108 INLGGTLIAHQALVSGDIDMYPEYTGTALISVVKGPVSSDADAVYKTVQDHYAKNFQLTW 167
Query: 103 VAENLQGAKYMLAV-NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINN 161
+ Y L V + +K+ D++K K+L + + +
Sbjct: 168 LKPAGINNGYALIVGPETAAKYNLKTMSDLSKVSKDLVLG--AGPEFADRTDGLPGLKAK 225
Query: 162 NKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
K FR A V + +D L + +
Sbjct: 226 YGMEFKEFRQF-----AKLGLRYDALAAGQIQVGNGFATDWQIADKKFVSLADDKGLF-- 278
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
V ++R D L + P +L + + ++ L+ + ++ + V L+
Sbjct: 279 PPYYVAPIIRDDILKQFPGAEDVLNKVSAVLDNQVMQQLNALVERDHEEAKDVAAEFLKQ 338
Query: 280 H 280
H
Sbjct: 339 H 339
>gi|124023399|ref|YP_001017706.1| glycine/betaine ABC transporter substrate-binding protein
[Prochlorococcus marinus str. MIT 9303]
gi|123963685|gb|ABM78441.1| ABC transporter substrate binding protein, glycine betaine/proline
family protein [Prochlorococcus marinus str. MIT 9303]
Length = 284
Score = 152 bits (383), Expect = 7e-35, Method: Composition-based stats.
Identities = 45/291 (15%), Positives = 95/291 (32%), Gaps = 10/291 (3%)
Query: 14 FSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKN 73
+ +R T W D + M ++E + + + + S+
Sbjct: 1 MTGLSGCSNAKPDQLRIGWTAWADADVVSLMAEKLIESHYEQPVERVMADIGIQYDSVAR 60
Query: 74 KGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDI-- 131
+D+ + W P + + + + G + V D I S D+
Sbjct: 61 GKLDLMLMAWLPKTHDKYWQKVSD-RVVDLGTMYSG-RIGWVVPDYVPKQRIGSISDLSD 118
Query: 132 AKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI 191
K + + GI+PG+ Q + S +LI AS A + + R ++
Sbjct: 119 PKIANDFNNTVQGIDPGSGLMQASEKALTAYDLSD--LKLISASGAAMTAVLDRAINDDR 176
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFS 251
V W PH + + + +L + + G E ++ + R P + K S
Sbjct: 177 WVVVTGWTPHWMFARYKLRFLKDPKSVFGGQEG-IHAIARLGLDKDHPKVVAFFTRFKLS 235
Query: 252 VALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQ 302
+ M+ + + + + + W+ G T + +D +
Sbjct: 236 DGQLDAMLL--DAENTSTEEAVNNYIANNRNQIDYWMNG-TMQEPKDREAK 283
>gi|291299894|ref|YP_003511172.1| Substrate-binding region of ABC-type glycine betaine transporter
[Stackebrandtia nassauensis DSM 44728]
gi|290569114|gb|ADD42079.1| Substrate-binding region of ABC-type glycine betaine transport
system [Stackebrandtia nassauensis DSM 44728]
Length = 314
Score = 151 bits (382), Expect = 9e-35, Method: Composition-based stats.
Identities = 54/305 (17%), Positives = 102/305 (33%), Gaps = 21/305 (6%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
LAV + T + A V A WT A+ A+ +LE L + + K L
Sbjct: 9 LAVGVMAATSACGGATTDSGGDKVNIAINPWTGYEASAAVIQYLLENELDVEVDTKELKE 68
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKY--MLAVNDVGFA 122
++ + +G D + + V G K V
Sbjct: 69 ENAWQGFEREGDDGVDVIVEDWQHTDLRKKYIDDKKVAVNAGTTGNKGLIGWYVPTWMLK 128
Query: 123 LG-----IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
K+ AK + +K G + + + + L ++ SE
Sbjct: 129 KYPGIDEWKNLNKYAKDLETSESKGKGQLLFGDKSYVSNEEALIDNLGLDYEVVVGGSEN 188
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE--------------ISGFGE 223
A ++ ++ P +F W+PH + D+ + + E + E
Sbjct: 189 ALIEAAQQSEKQQEPLLFYFWDPHWLFEDVELTRVKLPEYSDDTTQCPTDPKKVKCDYPE 248
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDL 283
+ T+V D+ D + +L+KN +++ +N + IL N + + + D+
Sbjct: 249 MDLETIVSKDFADNGGDAYKLVKNFEWTNEDQNSVALDILKNDMKPEEAAEKWVNANKDV 308
Query: 284 LKNWL 288
K WL
Sbjct: 309 WKKWL 313
>gi|86137729|ref|ZP_01056305.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Roseobacter sp. MED193]
gi|85825321|gb|EAQ45520.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Roseobacter sp. MED193]
Length = 319
Score = 151 bits (382), Expect = 9e-35, Method: Composition-based stats.
Identities = 49/319 (15%), Positives = 97/319 (30%), Gaps = 28/319 (8%)
Query: 1 MYKILAVCLFLTTFSISYARDADS----CTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
M K C+ + ++ P++ A WT TT + +L+ GYK
Sbjct: 1 MKKTTFACVLGAASLAAGLGNSAELGAVDQPIKLAINEWTGQHVTTHIAGEMLKAA-GYK 59
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ F+++ + I + W ++ A + EGSI + + AK +A
Sbjct: 60 VEYVTAGMLNQFQAIADGEIHATLEIWSSNVSDEYAIKISEGSIVDLGDLELAAKEGIAY 119
Query: 117 NDVGFA--LGIKSYQDIAKYKKELGAKIY---GIEPGNEGNQRILDMINNNKFSLKGFRL 171
G+ +++ + A G + L +
Sbjct: 120 PAHVAELCPGLPAWEALKDCAPLFAAAETLPAGRLVDYPADWGTPGADRMTGLELPFKAI 179
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG---------------- 215
SE A +++R P + W+PH S ++ ++
Sbjct: 180 PAGSEGALIAELRASSERKTPLLVTFWQPHWAMSAYDVKFVDLPAGEEACFNDPAWGPNP 239
Query: 216 --EEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVG 273
F + S + P +L N SVA + MM + + + V
Sbjct: 240 NAINDCDFSSTLISKAAWSGMAETWPAAYEILSNYTLSVADQQPMMGAVDVDGGKVEEVV 299
Query: 274 RTMLRTHPDLLKNWLIGVT 292
+ + + + T
Sbjct: 300 GAWMEANEASWRPVVDAAT 318
>gi|182417883|ref|ZP_02949194.1| glycine betaine/carnitine/choline ABC transporter,
substrate-binding protein [Clostridium butyricum 5521]
gi|237669397|ref|ZP_04529379.1| glycine betaine/carnitine/choline transport system permease protein
opucb [Clostridium butyricum E4 str. BoNT E BL5262]
gi|182378192|gb|EDT75726.1| glycine betaine/carnitine/choline ABC transporter,
substrate-binding protein [Clostridium butyricum 5521]
gi|237655284|gb|EEP52842.1| glycine betaine/carnitine/choline transport system permease protein
opucb [Clostridium butyricum E4 str. BoNT E BL5262]
Length = 527
Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats.
Identities = 40/296 (13%), Positives = 87/296 (29%), Gaps = 32/296 (10%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--L 61
++ + + S S + A +T+ M ++E K L
Sbjct: 235 LVTSLILIVIILFSTNVFNKSSNKIVIASKNFTEQIILGNMLEQLIEAKTDIDVETKLNL 294
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL-----------------EEGSIKLVA 104
V + +LK+ +D+++ Y + + E+ +I+ +
Sbjct: 295 GGTQVAYSALKSGSVDLYVEYTGTAYVNLLDIKDGNTNPDEVYKKVNEIFKEKENIEFLD 354
Query: 105 ENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK 163
Y L V +KS D+ K +E +L +
Sbjct: 355 PLGFNNTYALVVRKDTAEKYNLKSISDLEKVSEEFLMGPT--IEFANREDGLLGLDKAYN 412
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+ K + I+ NN V ++ + + L +
Sbjct: 413 LNFKKVKPIDG------GLRYTALMNNESDVIDAFTTDGLLDKFGLKVLEDDKNFF--PP 464
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
++R D L + P + +L + K + ++ + N +D + V L
Sbjct: 465 YYAAPLIRMDTLKEHPELEEVLNLLSNKITDEKMRKLNYEVDVNGRDPKVVANEFL 520
>gi|116249195|ref|YP_765036.1| putative substrate-binding component of ABC transporter [Rhizobium
leguminosarum bv. viciae 3841]
gi|241113192|ref|YP_002973027.1| Substrate-binding region of ABC-type glycine betaine transport
system [Rhizobium leguminosarum bv. trifolii WSM1325]
gi|115253845|emb|CAK12240.1| putative substrate-binding component of ABC transporter [Rhizobium
leguminosarum bv. viciae 3841]
gi|240861400|gb|ACS59066.1| Substrate-binding region of ABC-type glycine betaine transport
system [Rhizobium leguminosarum bv. trifolii WSM1325]
Length = 283
Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats.
Identities = 43/288 (14%), Positives = 98/288 (34%), Gaps = 12/288 (4%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M + +S + W D+ T +T +LE+ GY +
Sbjct: 1 MKTLWKALCAAAMIGVSILPARAEEKTITMGTMSWEDLTPITGITKKVLEDA-GYTVKVT 59
Query: 61 LLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ + + +L I + + + + ++ ++ G +AV
Sbjct: 60 EFSEWGIAYAALAKGDIQVLTSQTDYVAQDYWDK--NKNRLEKISPVSHGLYQGVAVPKY 117
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
I S + + + + KI GIEPG + + + + L +L+E S A
Sbjct: 118 VP---IDSLEQLNENADKFSGKIIGIEPGAGLMRDTSNAVKDYGLKL---QLVEGSTAAM 171
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+ ++ WEP + + YL + + ++ Y + + + P
Sbjct: 172 TAALKSAYDRKEWIAVTIWEPSWMVQKYEVKYLKDPKGVFPPPQSY-YWIGHKGFSAENP 230
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
+ ++ ++ +A + + N + + + H DL+K W
Sbjct: 231 HAREVMASVYVPIADITAINGAV-NEGKTMDQAVQDWIGAHADLIKRW 277
>gi|294339048|emb|CAZ87397.1| putative ABC-type proline/glycine betaine transport systems,
periplasmic component [Thiomonas sp. 3As]
Length = 294
Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats.
Identities = 49/275 (17%), Positives = 98/275 (35%), Gaps = 9/275 (3%)
Query: 9 LFLTTFSISYARDADSCTPVRFAD-TGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVT 67
L + + +A + +P+R W + M + + + G +
Sbjct: 23 LAAGSLLLPWAVAQAAPSPIRLGYVKAWPSSNIPSNMVAAYVRKRFGIPVELVSSEPGPM 82
Query: 68 FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKS 127
+ ++ + D+ + W P + L + + QG + L + D +K+
Sbjct: 83 WEAVASGRTDLTLTVWLPGTSEVYYHKLR-NKLVHLGAYYQGTRLGLTLPDYVP---VKT 138
Query: 128 YQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQ 187
+ + + KIYG+E G+ N I L+ +S A Q++R
Sbjct: 139 IAQLQSHHAQFHDKIYGVESGSVVNMMANKAIKTYHL--APMELVSSSTAAMTVQLKRAI 196
Query: 188 RNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKN 247
V W+P I +D +H+L E + G G + TV+ + P + L+
Sbjct: 197 ARQDWIVVTGWQPLWIWADFKLHFLDDPEGVFG-GVGHMDTVINPQLQRRAPQVVDWLRT 255
Query: 248 IKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPD 282
+ A M+ + N Q + + L P+
Sbjct: 256 FRLPQAELASMLLQLS-NGQSVEQIAEQWLARQPE 289
>gi|126740065|ref|ZP_01755755.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Roseobacter sp. SK209-2-6]
gi|126718884|gb|EBA15596.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Roseobacter sp. SK209-2-6]
Length = 320
Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats.
Identities = 47/320 (14%), Positives = 99/320 (30%), Gaps = 29/320 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSC-----TPVRFADTGWTDIAATTAMTSVILEEILGY 55
M K+ L S++ + P++ A WT TT + +L+ GY
Sbjct: 1 MMKLATFTSVLGAASLAAGVAGAADLGAVDKPIKLAVNEWTGQHVTTHIAGEMLKAA-GY 59
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
+ F+++ + I + W ++ A + EG+I + + AK +A
Sbjct: 60 NVEYVTAGMMNQFQAIADGEIHATLEIWSSNVSDEYANKISEGTIVELGDLELDAKEGIA 119
Query: 116 VNDVGFA--LGIKSYQDIAKYKKELGAKIY---GIEPGNEGNQRILDMINNNKFSLKGFR 170
G+ +++ + + G + L
Sbjct: 120 YPAHVAELCPGLPAWEALKNCAPLFASAETLPAGRLVDYPADWGTPGADRMTGLELPFKA 179
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE-------------- 216
+ SE A +++R P + W+PH S ++ ++
Sbjct: 180 VPAGSEGALIAELRASTERKTPLLVTFWQPHWAMSAYDVKFVDLPVGEDACFNDPAWGPN 239
Query: 217 ----EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
F + ++ S + P +L N +V + MM I + + V
Sbjct: 240 PNAVNDCDFAPSRIFKAAWSGTAETWPAAFEILTNYTLAVEHQQPMMGAIDVDGGSVEEV 299
Query: 273 GRTMLRTHPDLLKNWLIGVT 292
+ + D + + T
Sbjct: 300 VAAWMAANEDSWRPVVDAAT 319
>gi|167841973|ref|ZP_02468657.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
periplasmic substrate-binding protein [Burkholderia
thailandensis MSMB43]
Length = 287
Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats.
Identities = 57/292 (19%), Positives = 107/292 (36%), Gaps = 13/292 (4%)
Query: 1 MY---KILAVCLFLTTFSISYARDADSCTPVRFADT-GWTDIAATTAMTSVILEEILGYK 56
M K++ + + + AD+ ++ GW D AT+ + + I+E LGY
Sbjct: 1 MKFLTKLMGCGVLSMMLAAAAPAQADTKPTLKIGYVEGWDDSVATSNVAARIIETKLGYP 60
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ +A V ++ + +D + W P + + + + N AK L V
Sbjct: 61 VQLVPVAAGVMWQGVARGDLDATLSAWLPVTQGAYWD-QFKTKVVDLGTNFPDAKIGLIV 119
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
A I + K + +I GI+ G ++ D I + + L+ +S
Sbjct: 120 PIYVKAKTIAD---LDAQKSDFAGRIVGIDAGAGVMRKTDDAIKAYGLN---YSLMPSSG 173
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
A +++ R N V W PH + + + +L +++ G E V V
Sbjct: 174 SAMTAELARSIHANKAVVVTGWAPHWMFAKWKLRFLDDPKKVYGEAE-HVDNVANPALET 232
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
K + LK ++ + +M I N + H D + WL
Sbjct: 233 KAKPVVAFLKKFQWKPGEIDGVMLAI-QNGSKPAAAADAWIAAHGDRVGEWL 283
>gi|251780296|ref|ZP_04823216.1| glycine betaine/carnitine/choline transport system permease protein
opucb [Clostridium botulinum E1 str. 'BoNT E Beluga']
gi|243084611|gb|EES50501.1| glycine betaine/carnitine/choline transport system permease protein
opucb [Clostridium botulinum E1 str. 'BoNT E Beluga']
Length = 523
Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats.
Identities = 49/302 (16%), Positives = 105/302 (34%), Gaps = 33/302 (10%)
Query: 2 YKILAV--CLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
ILA+ C+ L F I+ ++ + +T+ + S +E+
Sbjct: 229 KSILALTGCIILGIFVITNISTNNNSKTITIGSKDYTEQEILCNIFSEAIEKNTDISVKR 288
Query: 60 KL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIA----------------PYLEEGSIK 101
K + F +LK+ ID+++ Y + + ++ +I+
Sbjct: 289 KSALGGTQICFSALKSGDIDMYVDYSGTCYGDTLKYPPISDVEKVYDTVKTDFKDKFNIE 348
Query: 102 LVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN 160
++ + Y LAV +K+ DIAK EL I I+ +
Sbjct: 349 VLNQMGFNNTYTLAVKKETAEKYNLKTISDIAKVGDEL--TISPSLEFLNREDGIIGLKK 406
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISG 220
F+ K I+ S NN V ++ + ++ L +
Sbjct: 407 TYNFNFKNEIGIDGSPK------YAALMNNESDVIDAFLTDGLLKKFDLTVLEDDKNFF- 459
Query: 221 FGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLR 278
+V+ + L+K P I+ +++ I + + ++ + ++D + V R L+
Sbjct: 460 -PPYYAIPLVKGETLEKYPEIAPIIEEIAPLLTNEVMIDLNYQVDELRKDPKDVAREFLQ 518
Query: 279 TH 280
+
Sbjct: 519 AN 520
>gi|219685901|ref|ZP_03540706.1| glycine betaine, L-proline ABC transporter, binding protein
[Borrelia garinii Far04]
gi|219672569|gb|EED29603.1| glycine betaine, L-proline ABC transporter, binding protein
[Borrelia garinii Far04]
Length = 275
Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats.
Identities = 51/277 (18%), Positives = 96/277 (34%), Gaps = 7/277 (2%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+ C+FL S + + + V+ W A T + V+ E +GY I
Sbjct: 6 KLFIGFCIFLIFLSCDEKKSSKNLKSVKIGYVNWGGETAATNVLKVVFE-KMGYNAEIFS 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V ++ L K +D + W P+ +KF L + + N +G V
Sbjct: 65 VTTSVMYQYLATKKVDGTVSSWVPTADKFYYEKL-KTKFVDLGANYEGTIQGFVVPSYVP 123
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
I S ++ + K+ GI+ G ++ S + LI +SE +
Sbjct: 124 ---ISSISELKGKGDKFKNKMIGIDAGAGTQIVTEQALDYYGLSK-EYELIPSSESVMLA 179
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNI 241
+ + N + W+PH S +I L ++ G SV+T+VR + +
Sbjct: 180 SLDSAIKRNEWVLVPLWKPHWAFSRYDIKLLDDP-DLIMGGIESVHTLVRLGLENDDLDA 238
Query: 242 SRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLR 278
+ ++ L +M +
Sbjct: 239 YYVFDQFYWNDDLILPLMDRNDKEPGKEYRNAVEFVE 275
>gi|159185969|ref|NP_356684.2| ABC transporter, substrate binding protein (glycine-betaine)
[Agrobacterium tumefaciens str. C58]
gi|159141103|gb|AAK89469.2| ABC transporter, substrate binding protein (glycine-betaine)
[Agrobacterium tumefaciens str. C58]
Length = 292
Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats.
Identities = 45/288 (15%), Positives = 100/288 (34%), Gaps = 12/288 (4%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M I V ++ + W D+ T +T +LE+ GY +
Sbjct: 10 MKTIWKVLCAAAMVGMTVFSAKAEEKTITVGTMSWEDLTPITGITKKVLEDS-GYTVKVV 68
Query: 61 LLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ + + +L I + + + + ++ ++ G +AV
Sbjct: 69 SFSEWGIAYAALSKGDIQLLASQTDYVAQDYWDK--NKRRLEKISPVSHGLYQAIAVPKY 126
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
I S + + G KI GIEPG+ + + L +L+E S A
Sbjct: 127 V---TIDSMDQLNDNADKFGGKIIGIEPGSGLMRDAGKAAKDYGLKL---QLVEGSTAAM 180
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+ ++ WEP + ++ +L + + ++ Y + + + + P
Sbjct: 181 TAALKSAIDRKEWVAVTVWEPSWMMQRYDVKFLKDPKGVFPPPQSY-YWIGQKGFSAEYP 239
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
+ ++ ++ +A + + N+ + + +H DLLK W
Sbjct: 240 HAREVIASVYVPLADITAINGAV-NDGKTMDQAVKEWTDSHADLLKRW 286
>gi|297192567|ref|ZP_06909965.1| glycine betaine-binding lipoprotein [Streptomyces pristinaespiralis
ATCC 25486]
gi|197718107|gb|EDY62015.1| glycine betaine-binding lipoprotein [Streptomyces pristinaespiralis
ATCC 25486]
Length = 320
Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats.
Identities = 59/312 (18%), Positives = 108/312 (34%), Gaps = 28/312 (8%)
Query: 3 KILAVCLFLTTFSISYARDADSCT---------PVRFADTGWTDIAATTAMTSVILEEIL 53
+ AV L S+S A++ V+ W A TA+ S ILEE L
Sbjct: 8 RTTAVAAALGVLSLSACSAAETGKSQDAAGGEKTVKLTVPSWVGAQANTAVASYILEEEL 67
Query: 54 GYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQ-GAKY 112
GYK + + + + +L ID M W K Y+E+ + +L
Sbjct: 68 GYKVKTQQMGEVLAWDALSKGDIDAIMEDWG--HPKEEKQYVEDRKTVVKGGDLGVEGHI 125
Query: 113 MLAVNDVGFA--LGIKSYQDIAKYKKELGAKIYGIEPG---NEGNQRILDMINNNKFSLK 167
V + ++++ KY KEL G + + D L
Sbjct: 126 GWFVPKYFADKHPDVTDWKNLDKYAKELATAESGGKGELLEGSPDYVTNDDAIIKNLGLN 185
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE---------- 217
SE A + I++ + P + W P +N+ +++ + E
Sbjct: 186 LKTNYAGSEAAQITAIQKYVKAKKPFLTYWWTPQWLNAQVDLVEVKLPEYKEGCDADPKK 245
Query: 218 -ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
+ + + +D+ + LKN K++ +NE+ ++I K +
Sbjct: 246 IACAYPNTPLQKFLNADFAKNGGEAAEFLKNFKWTTEQQNEVAQMIAGEKMSPEAAAEKW 305
Query: 277 LRTHPDLLKNWL 288
++ + K WL
Sbjct: 306 VKANEATWKQWL 317
>gi|17548285|ref|NP_521625.1| putative glycine betaine transmembrane and periplasmic ABC
transporter protein [Ralstonia solanacearum GMI1000]
gi|17430531|emb|CAD17215.1| putative glycine betaine transmembrane and periplasmic abc
transporter protein [Ralstonia solanacearum GMI1000]
Length = 289
Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats.
Identities = 60/294 (20%), Positives = 112/294 (38%), Gaps = 13/294 (4%)
Query: 1 MY---KILAVCLFLTTFSISYARDADSCTPVRFADT-GWTDIAATTAMTSVILEEILGYK 56
M K++ + S + ++ GW D ATT + + I+E+ LGY
Sbjct: 1 MKFLEKLVFASAASVMLTWSAFALGATKPGLKIGYVEGWDDSVATTNVAARIIEKKLGYP 60
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ +A V ++ + +D + W P + + + + N A+ L V
Sbjct: 61 VQLVPVAAGVMWQGVARGDLDATLSAWLPVTQGAYWD-QFKTKVVDLGPNFTEARIGLIV 119
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ G K+ +D+ K +I GI+ G ++ D I + + + L+ +S
Sbjct: 120 PES---AGAKTIEDLNAQKSAFEGRIVGIDAGAGVMRKAGDAIKSYGLN---YSLMPSSG 173
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
A +++ R N P V W PH + + + +L +++ G E V VV
Sbjct: 174 SAMTAELARSMNANKPIVVTGWAPHWMFAKWKLRFLEDPKKVFGDSE-HVDNVVNPGLET 232
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIG 290
K + LK ++ + +M I N + H D + WL G
Sbjct: 233 KAKPVVTFLKKFQWKPGEIDSVMLAI-QNGTKPDAAADAWIAAHADRVNAWLEG 285
>gi|163758502|ref|ZP_02165590.1| glycine betaine/L-proline ABC transporter, substrate binding
protein, putative [Hoeflea phototrophica DFL-43]
gi|162284791|gb|EDQ35074.1| glycine betaine/L-proline ABC transporter, substrate binding
protein, putative [Hoeflea phototrophica DFL-43]
Length = 319
Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats.
Identities = 45/314 (14%), Positives = 93/314 (29%), Gaps = 34/314 (10%)
Query: 8 CLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVT 67
LT +S V+ WT A + ++E +G +
Sbjct: 5 ATLLTATLLSVISAPALAESVKIGVPSWTGAQAIAHILGTVVENRIGGEVEYVPGNNATI 64
Query: 68 FRSLK--NKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
F+++ ID+ W P+ E F Y++E ++ N V+ A
Sbjct: 65 FQAMDQGKGDIDVHPDVWLPNQESFTKQYVDEAGTVTLSSNPYQGNQGFCVSKDFAAANN 124
Query: 126 KSYQD---------IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ + +++ PG + + L I A E
Sbjct: 125 ITDIADLGRPDVAALMDSDGNGKGEMWIGAPGWASANVNEVKVRDYGL-LDFVEPIRAEE 183
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG-------------EEISGFGE 223
++I+ F +EPH + ++ L ++ + +
Sbjct: 184 SVKTARIKDSIAKGEGYAFYCYEPHAVWYMFDVVMLSEPTYDPAKYVMIQPSDDADWYEK 243
Query: 224 ASVYT---------VVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGR 274
++V T + ++ P I+ + S + I +D V +
Sbjct: 244 STVATKDDLKKVQIAWSNSLPERSPAIAEFFQRFSLSADDVSNFAYEISGKGRDPAEVAK 303
Query: 275 TMLRTHPDLLKNWL 288
+ +PD + WL
Sbjct: 304 EWMEANPDRVDAWL 317
>gi|56807484|ref|ZP_00365427.1| COG2113: ABC-type proline/glycine betaine transport systems,
periplasmic components [Streptococcus pyogenes M49 591]
Length = 452
Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats.
Identities = 51/241 (21%), Positives = 89/241 (36%), Gaps = 9/241 (3%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
+ + + AD V A W A+T + + +L+ GY + L
Sbjct: 221 VFLIAALGRGIMAMTSGMADKGETVNIAYVQWDSEVASTHVIAEVLKNE-GYHVTLTPLD 279
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
V ++++ N D W P + + + NL+G K LAV
Sbjct: 280 NAVMWQTVANGNADFSTSAWLPVTHGQQYQKY-KSKLDDLGPNLKGTKLGLAVPKYM--- 335
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
I K+ KI GIEPG + +L + L+ AS A + +
Sbjct: 336 --TDVNSIEDLSKQADQKITGIEPGAGIMAAAQKTLKEYH-NLSSWELVAASTGAMTTSL 392
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
+ + P V +W PH + + ++ YL +E G E ++ T+ R PN+ +
Sbjct: 393 DQAIKKKDPIVVTAWSPHWMFAKYDLKYLKDPKETFGSTE-NINTIARKGLKKDLPNVYK 451
Query: 244 L 244
+
Sbjct: 452 I 452
>gi|297616823|ref|YP_003701982.1| substrate-binding region of ABC-type glycine betaine transporter
[Syntrophothermus lipocalidus DSM 12680]
gi|297144660|gb|ADI01417.1| Substrate-binding region of ABC-type glycine betaine transport
system [Syntrophothermus lipocalidus DSM 12680]
Length = 305
Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats.
Identities = 45/311 (14%), Positives = 87/311 (27%), Gaps = 42/311 (13%)
Query: 1 MYK-------ILAVCLFLTTFSISY----ARDADSCTPVRFADTGWTDIAATTAMTSVIL 49
M K +L + + D+ V +T+ M + ++
Sbjct: 1 MKKQFLRGLWLLLTVFLVVGLTAGCESRSTSDSGKGGVVTVGSKNFTENIIMGEMMAQVI 60
Query: 50 EEILGYKT--NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIA--------------- 92
E K + L V ++ LK +D + Y L +
Sbjct: 61 EAKTDLKVNRKLNLGGTLVCWQGLKKGELDFYPDYTGTGLMAILKRDVITDPDEVYRIVQ 120
Query: 93 -PYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEG 151
Y ++ IK + Y +AV + K + +
Sbjct: 121 EEYNKQFKIKWLEPFGFNDTYAIAVREEFAEQNNLKTISDLKPYAK--------DLIFCA 172
Query: 152 NQRILDMINNNKFSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIH 210
Q + + + + L A + + + + V ++ +
Sbjct: 173 EQEFYNRKDGFPGFSETYGLTFKETKAMETSLKYKAVADKKADVIDAFSTDGELISYRMT 232
Query: 211 YLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQD 268
L + F VVR D L+K P + L ++ K S A +M L+ +D
Sbjct: 233 ILED--DKHFFPPYYCAPVVRMDTLEKYPELESALNSLGGKISEADMQQMNYLVKEKGED 290
Query: 269 RQFVGRTMLRT 279
V L+
Sbjct: 291 PAKVAADFLKN 301
>gi|150017718|ref|YP_001309972.1| glycine/betaine ABC transporter substrate-binding protein
[Clostridium beijerinckii NCIMB 8052]
gi|149904183|gb|ABR35016.1| Substrate-binding region of ABC-type glycine betaine transport
system [Clostridium beijerinckii NCIMB 8052]
Length = 524
Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats.
Identities = 41/301 (13%), Positives = 99/301 (32%), Gaps = 34/301 (11%)
Query: 4 ILAVCLFLTTFSISYARDA---DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
ILA + + + + + + +T+ + S ++E N K
Sbjct: 231 ILAATACVLIGIFAVSGLSKKISNKKVITIGSKDFTEQEILGNILSELIERKTDISVNRK 290
Query: 61 L--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFI----------------APYLEEGSIKL 102
V F +++N +D+ + Y + + + ++ +I++
Sbjct: 291 FALGGTQVIFSAMQNGDVDMSVDYTGTAYGDELKYKPISDVEEVYNTVKKDFKDKYNIEV 350
Query: 103 VAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINN 161
+ + Y LAV +K+ D++K ++ A ++ +
Sbjct: 351 LKQMGFNNTYTLAVTKETAKKYNLKTISDLSKVSSDITATTTL--EFLNREDGLVGLAKK 408
Query: 162 NKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
+ K I+ S N V ++ + ++ L +
Sbjct: 409 YNLNFKNTVGIDGSPR------YAALMNKESDVIDAFSTDGLLKKYDLSVLKDDKNFF-- 460
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
VVR++ L K P I L++ + + + +E+ + K+D + V L+
Sbjct: 461 PPYYAVPVVRAETLKKYPEIQPLVEEVGDLLNNDVMSELNYEVDELKKDPKDVAVEFLQK 520
Query: 280 H 280
+
Sbjct: 521 N 521
>gi|126700835|ref|YP_001089732.1| putative osmoprotectant ABC transporter substrate-binding/permease
[Clostridium difficile 630]
gi|115252272|emb|CAJ70113.1| ABC-type transport system, glycine betaine/carnitine/choline
permease [Clostridium difficile]
Length = 511
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 42/297 (14%), Positives = 87/297 (29%), Gaps = 31/297 (10%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
IL + + T SY + + A T+ M +++E+ G I
Sbjct: 221 ILGSLILIATIFTSYLFNPSKTQTIHIATKPMTEQYILGEMLDILIEKNTGLNVEITQGV 280
Query: 62 -LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP---------------YLEEGSIKLVAE 105
+++N DI+ Y + Y + ++
Sbjct: 281 GGGTSNIQPAMENGEFDIYPEYTGTGWNMVLKKNELYTESMFSKLQSEYKTKLKMQWTGM 340
Query: 106 NLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKF 164
Y LAV + ++I K +G E E + N
Sbjct: 341 YGFSNSYALAVRKEVADKY--NLKNITDLKDVSSKLTFGAEYDFYEREDGYTPLCNTYGL 398
Query: 165 SLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEA 224
+ + + + + V + S ++ L + + +
Sbjct: 399 NF------KDTVDLDIGLKYQAINESKIDVMPIFTTDGQYSVSDVVVLKD--DKNFYPSY 450
Query: 225 SVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
VVR + L++ P +S++ K + + +M + NN + + V R L
Sbjct: 451 QCGNVVRLEVLEENPELSKVFKMVGDILTDKEMAKMNYDVENNNLEPREVAREFLNK 507
>gi|260432659|ref|ZP_05786630.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Silicibacter lacuscaerulensis
ITI-1157]
gi|260416487|gb|EEX09746.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Silicibacter lacuscaerulensis
ITI-1157]
Length = 316
Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats.
Identities = 42/320 (13%), Positives = 101/320 (31%), Gaps = 36/320 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K+ L + V W + AT + V +E+ LG + ++
Sbjct: 1 MNKLT----MLLGGASMALAAPALAADVVIGVPNWPSVNATAHILKVAIEQNLGLEVELQ 56
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
P+ F ++ + + + W P+ + Y++E + N A + V+
Sbjct: 57 NGTNPIVFEAMDSGAMHVHPEVWLPNQQNLHDTYVKEKGTVALNPNGVEAFQGMCVDKAT 116
Query: 121 FALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
+ + +++ PG + + L
Sbjct: 117 ADANGITSIDDLTNPDIAALFDSDGDGQGELWIGAPGWASTNVEKIRAKSYGYDQVF-EL 175
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS------------ 219
E E +++ + + P V + PH + ++ L +
Sbjct: 176 TEIDETVAYANLDNAIKAGKPWVGFCYTPHYVFQLHDLQVLEEPPYDAAKWKVIQPTDDP 235
Query: 220 ----------GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDR 269
+ +A ++ + P ++R+L N+K + +EM ++ +++D
Sbjct: 236 DWLEKSEAGVAWDKAYLHLHYAKSLENDFPEVARMLANMKLTTDQVSEMTYALVIDEKDP 295
Query: 270 QFVGRTMLRTHPDLLKNWLI 289
Q + + D + W+
Sbjct: 296 QAYAEEWVAANEDAVLGWMS 315
>gi|297180195|gb|ADI16416.1| ABC-type proline/glycine betaine transport systems, periplasmic
components [uncultured bacterium HF770_09N20]
Length = 317
Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats.
Identities = 38/309 (12%), Positives = 87/309 (28%), Gaps = 25/309 (8%)
Query: 3 KILAVCLFLTTFSISYAR--DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
K L L T + + ADS P+ W+ + I E +G
Sbjct: 7 KTLGAMLVSTMLAFGASAVKAADSSAPIVIPTHNWSSQVVMAYVIGGIFES-MGNNVEYV 65
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ S++ + I W + + +G + + + V
Sbjct: 66 SADTQAVYESIRQGDVTISHEVWQSTFGASFYAAMAKGGVIDAGTHAAKTLEEVGVPQWV 125
Query: 121 ----FALGIKSYQDIAKYKKELGAKIYGI------EPGNEGNQRILDMINNNKFSLKGFR 170
G+ +++ + K G P + Q D +
Sbjct: 126 IDQDLCPGLPNWEALKNCKDVFATADSGGKGRILEGPQSWHGQEYPDRVEAL-LGDDYTV 184
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINS-----------DLNIHYLPGGEEIS 219
A ++++ ++ + +W P+ ++ L GG+
Sbjct: 185 KFAGGADALWAELAAAKKEGRGTIVFNWTPNFTDAEGFVFIEWPPYYLGCRKQDGGDSKC 244
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
G + + P + + F+ +M L+ + + G+ L
Sbjct: 245 GSPIGWLKKAANYKFPKTHPAAYTMFSRLSFNAGQIGQMAALVDIDGLTHEEAGKKWLAD 304
Query: 280 HPDLLKNWL 288
+ D+ K ++
Sbjct: 305 NEDVWKPFV 313
>gi|225568762|ref|ZP_03777787.1| hypothetical protein CLOHYLEM_04841 [Clostridium hylemonae DSM
15053]
gi|225162261|gb|EEG74880.1| hypothetical protein CLOHYLEM_04841 [Clostridium hylemonae DSM
15053]
Length = 511
Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats.
Identities = 37/298 (12%), Positives = 85/298 (28%), Gaps = 32/298 (10%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL- 61
K+ A L L ++ A + ++ A T+ M S+++E+ G +T +
Sbjct: 220 KVTAAVLCLALI-VAGALNFHKKDTIQIATKPMTEQYILGEMLSLLIEQDTGLETEVTQG 278
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP---------------YLEEGSIKLVA 104
+++ DI+ Y + Y ++ ++
Sbjct: 279 VGGGTSNIQPAMEKGEFDIYPEYTGTGWNMVLKKNGLYTEDLFEDMEKEYKDKYGMQWEG 338
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNK 163
Y LAV + + +K +G E E + +
Sbjct: 339 MYGFNNTYGLAVRKETARQY--GLKTYSDLQKVADKLTFGAEYDFFEREDGYDALCDAYG 396
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
F + + + + S ++ L ++ +
Sbjct: 397 FRFGN------TMDLDIGLKYQAVNQGKIDAVIIFTTDGQLSTSDVTVLED--DLQFYPS 448
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
VVRS+ L + P + + + + A E+ + + V + L+
Sbjct: 449 YMCGNVVRSEVLKEHPQLQDVFDKVAGILTDARMAELNNKVEAEGMEPADVAKQFLKE 506
>gi|86361125|ref|YP_473012.1| glycine betaine/L-proline ABC transporter, substrate-binding
protein [Rhizobium etli CFN 42]
gi|86285227|gb|ABC94285.1| probable glycine betaine/L-proline ABC transporter,
substrate-binding protein [Rhizobium etli CFN 42]
Length = 283
Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats.
Identities = 43/288 (14%), Positives = 98/288 (34%), Gaps = 12/288 (4%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M + +S + W D+ T +T +LE+ GY +
Sbjct: 1 MKTLWKALCAAAVIGMSILPARAEEKTITLGTMSWEDLTPITGITKKVLEDA-GYTVKVT 59
Query: 61 LLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ + + +L I + + + ++ ++ G +AV
Sbjct: 60 EFSEWGIAYAALAKGDIQALTSQTDYVAQDYWDK--NKNRLEKISPVSHGLYQGVAVPKY 117
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
I S + + + + G KI GIEPG + + + L +L+E S A
Sbjct: 118 VP---IDSLEQLNENADKFGGKIIGIEPGAGLMRDTSNAVKEYGLKL---QLVEGSTAAM 171
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+ ++ WEP + + YL + + ++ Y + + ++ P
Sbjct: 172 TAALKSAYDRQEWIAVTIWEPSWMVQKYEVKYLKDPKGVFPPPQSY-YWIGHKGFSEEYP 230
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
+ ++ ++ +A + + + + + + H DL+K W
Sbjct: 231 HAREVMASVYVPIADITTINGEV-KDGKTMDQAVQDWIGAHADLIKRW 277
>gi|229017594|ref|ZP_04174488.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus
AH1273]
gi|228743663|gb|EEL93769.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus
AH1273]
Length = 544
Score = 149 bits (377), Expect = 4e-34, Method: Composition-based stats.
Identities = 32/292 (10%), Positives = 85/292 (29%), Gaps = 16/292 (5%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+++ + + + A ++ M ++E+ + +K
Sbjct: 209 KRVILTICIVVVMIAAPFLWNTQKKDIVIAGKLGSEPEILIQMYKQLIEQDTDLQVELKP 268
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAE---NLQGAKYMLAV 116
F +LK+ +DI+ + +L F+ + + V E KY + +
Sbjct: 269 GLGKTAFVFEALKSGEVDIYPEFSGTALSTFVKEEPKSTNRDEVYEQARIGMENKYNMVM 328
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGI------EPGNEGNQRILDMINNNKFSLKGFR 170
+ K + E D + K K +
Sbjct: 329 LKPMEYNNTYALAMPKKIADQNNINTISDLGKIAQEAKVGFTLEFADREDGYKGMQKLYN 388
Query: 171 LIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV 229
++ ++ ++ V ++ + L + + +
Sbjct: 389 YKFSNVKTMEPKLRYSAIQSGDVNVIDAYSTDSELEQYGLKVLKDDKGLF--PPYQGAPL 446
Query: 230 VRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+R + L K P + ++L + K + +M + N + + V + L+
Sbjct: 447 LRKETLQKYPELEKVLNKLSGKITDEEMRKMNYEVNVNGKSSEEVAKQFLQK 498
>gi|116074545|ref|ZP_01471806.1| ABC transporter binding protein, glycine betaine/proline family
[Synechococcus sp. RS9916]
gi|116067767|gb|EAU73520.1| ABC transporter binding protein, glycine betaine/proline family
[Synechococcus sp. RS9916]
Length = 315
Score = 149 bits (377), Expect = 4e-34, Method: Composition-based stats.
Identities = 43/270 (15%), Positives = 101/270 (37%), Gaps = 9/270 (3%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGY 82
D P+R + W+D + M + ++ L + + + ++S+ +D+ +
Sbjct: 51 DRNQPLRLGWSAWSDAEVVSLMAAELIRSALNQPVERVMADIGIQYQSVARGDLDLMLMA 110
Query: 83 WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKY--KKELGA 140
W P+ + + + + + G V D I S + ++ +
Sbjct: 111 WLPATHRDYWTRIRD-QVLDLGPIYSGTL-GWIVPDYVPDDVISSIRQLSDPALASQFDN 168
Query: 141 KIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEP 200
++ GI+PG+ NQ LD + + + L+ +S A + + + + SW P
Sbjct: 169 RVQGIDPGSGLNQASLDALKRYRLN--NMELVPSSSAAMAAVLAQAIEQERWLIATSWTP 226
Query: 201 HPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMK 260
H + + + +L E + G G ++ + R + P+++ L ++++
Sbjct: 227 HWMFARFKLRFLEDPERVFG-GTERIHALARLGLDQQVPDVTDFLSRFHLPSEDLDQLLL 285
Query: 261 LILNNKQDRQFVGRTMLRTHPDLLKNWLIG 290
T L P ++ W+ G
Sbjct: 286 QAQT--TSPDDAVTTYLANQPKRVEYWITG 313
>gi|229023811|ref|ZP_04180296.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus
AH1272]
gi|228737496|gb|EEL88006.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus
AH1272]
Length = 503
Score = 149 bits (377), Expect = 4e-34, Method: Composition-based stats.
Identities = 32/292 (10%), Positives = 85/292 (29%), Gaps = 16/292 (5%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+++ + + + A ++ M ++E+ + +K
Sbjct: 209 KRVILTICIVVVMIAAPFLWNTQKKDIVIAGKLGSEPEILIQMYKQLIEQDTDLQVELKP 268
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAE---NLQGAKYMLAV 116
F +LK+ +DI+ + +L F+ + + V E KY + +
Sbjct: 269 GLGKTAFVFEALKSGEVDIYPEFSGTALSTFVKEEPKSTNRDEVYEQARIGMENKYNMVM 328
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGI------EPGNEGNQRILDMINNNKFSLKGFR 170
+ K + E D + K K +
Sbjct: 329 LKPMEYNNTYALAMPKKIADQNNINTISDLGKIAQEAKVGFTLEFADREDGYKGMQKLYN 388
Query: 171 LIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV 229
++ ++ ++ V ++ + L + + +
Sbjct: 389 YKFSNVKTMEPKLRYSAIQSGDVNVIDAYSTDSELEQYGLKVLKDDKGLF--PPYQGAPL 446
Query: 230 VRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+R + L K P + ++L + K + +M + N + + V + L+
Sbjct: 447 LRKETLQKYPELEKVLNKLSGKITDEEMRKMNYEVNVNGKSSEEVAKQFLQK 498
>gi|229133109|ref|ZP_04261945.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus
BDRD-ST196]
gi|228650318|gb|EEL06317.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus
BDRD-ST196]
Length = 503
Score = 149 bits (376), Expect = 5e-34, Method: Composition-based stats.
Identities = 30/300 (10%), Positives = 85/300 (28%), Gaps = 32/300 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+++ + + + A ++ M ++E+ + +K
Sbjct: 209 KRVILTICIVVVMIAAPFLWNTEKKDIVIAGKLGSEPEILIQMYKQLIEQDTDLQVELKP 268
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL-----------------EEGSIKL 102
F +LK+ +DI+ + +L F+ ++ ++ +
Sbjct: 269 GLGKTAFVFEALKSGEVDIYPEFSGTALSTFVKEEPKSTNRDEVYEQARIGMEKKYNMVM 328
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
+ Y LA+ + E D +
Sbjct: 329 LRPMEYNNTYALAMPKKIADQNNINTI--------SDLGKVAQEAKVGFTLEFADREDGY 380
Query: 163 KFSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
K K + ++ ++ ++ V ++ + L + +
Sbjct: 381 KGMQKLYNYKFSNVKTMEPKLRYSAIQSGDVNVIDAYSTDSELEQYGLKVLKDDKGLF-- 438
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++R + L K P + ++L + K + +M + N + + V + L+
Sbjct: 439 PPYQGAPLLRKETLQKYPELEKVLNKLSGKITDEEMRKMNYEVNVNGKSSEEVAKQFLQK 498
>gi|300780047|ref|ZP_07089903.1| glycine betaine ABC superfamily ATP binding cassette transporter,
binding protein [Corynebacterium genitalium ATCC 33030]
gi|300534157|gb|EFK55216.1| glycine betaine ABC superfamily ATP binding cassette transporter,
binding protein [Corynebacterium genitalium ATCC 33030]
Length = 301
Score = 149 bits (376), Expect = 5e-34, Method: Composition-based stats.
Identities = 57/301 (18%), Positives = 103/301 (34%), Gaps = 22/301 (7%)
Query: 1 MYKILAVCLFLTTFSISYARDA-----------DSCTPVRFAD-TGWTDIAATTAMTSVI 48
+ K LA T A + WTD +T +
Sbjct: 3 IRKTLATLSAATLIFGLTACSDSGDTASSEGGDGDKGTITLGYLPSWTDGLSTAYLLENK 62
Query: 49 LEEILGYKTNI-KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL 107
LE GY L V + L ID++ W + I+ +
Sbjct: 63 LEAA-GYTVEHETLTDAAVLYAGLAKGDIDLYPSAWPEKTHAQYMDKYSD-DIEDLGAYY 120
Query: 108 QGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
A AV + I S +D+ + G K+ GIEPG + + I
Sbjct: 121 DNALLTWAVPEYMED--INSIEDLKGKADDFGGKVVGIEPGAGLTKASEEAITEYGLDAD 178
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
G+ L +S A S+++ V W P NS + L + G E+ ++
Sbjct: 179 GYSLSTSSTPAMLSELQTAVDGEKDIVVTLWRPFWANSKFPVKDLEDPKGALGEPES-LH 237
Query: 228 TVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILN---NKQDRQFVGRTMLRTHPDLL 284
+ R + + P +++ L+++K S + ++N ++ + + L +PD++
Sbjct: 238 WLARGGFAEDNPEVAKWLEDLKLSDDEYGSLEDTVVNEYGEGKEPEAI-EAWLGENPDIV 296
Query: 285 K 285
K
Sbjct: 297 K 297
>gi|159037258|ref|YP_001536511.1| substrate-binding region of ABC-type glycine betaine transport
system [Salinispora arenicola CNS-205]
gi|157916093|gb|ABV97520.1| Substrate-binding region of ABC-type glycine betaine transport
system [Salinispora arenicola CNS-205]
Length = 324
Score = 149 bits (376), Expect = 5e-34, Method: Composition-based stats.
Identities = 44/306 (14%), Positives = 91/306 (29%), Gaps = 24/306 (7%)
Query: 5 LAVCLFLTTFS-----ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
L LT S A D+ C A W A A+ + + E LG
Sbjct: 18 TVAALALTACGGAKVESSDAADSGDCGTFTIAINPWVGYEANAAVIAHVAETELGCTVVK 77
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSI-KLVAENLQGAKYMLAVND 118
K L + ++ +D + W + Y+E+ V
Sbjct: 78 KDLKEEIAWQGFGTGQVDAIVENWG--HDDLKKKYIEDQKTAVDAGSTGVEGVIGWYVPP 135
Query: 119 VGFA--LGIKSYQDIAKYKKELGAKIYGIEPG---NEGNQRILDMINNNKFSLKGFRLIE 173
I + ++ KY G + + + D L +
Sbjct: 136 WMAEEYPDITDWNNLNKYASLFETTESGGKGQLLDGDPSFVTNDEALVKNLELDYKVVYA 195
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE-----------ISGFG 222
SE A R+ ++ P + ++P S++ + + E +
Sbjct: 196 GSEPALIQAFRQAEKEKKPVLGYFYDPQWFLSEVELVKVNLPEYQEGCDADPEKVACDYP 255
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPD 282
+ +V + D +L+ N ++ +N + + I + + + + + D
Sbjct: 256 VYDLDKIVSKSFADANGPAYQLVNNFTWTNEDQNLVARYIAQDNMSPEEAAKKWVEANKD 315
Query: 283 LLKNWL 288
++ WL
Sbjct: 316 KVEAWL 321
>gi|254976811|ref|ZP_05273283.1| putative osmoprotectant ABC transporter,substrate-binding/permease
protein [Clostridium difficile QCD-66c26]
gi|255094196|ref|ZP_05323674.1| putative osmoprotectant ABC transporter,substrate-binding/permease
protein [Clostridium difficile CIP 107932]
gi|255315950|ref|ZP_05357533.1| putative osmoprotectant ABC transporter,substrate-binding/permease
protein [Clostridium difficile QCD-76w55]
gi|255518608|ref|ZP_05386284.1| putative osmoprotectant ABC transporter,substrate-binding/permease
protein [Clostridium difficile QCD-97b34]
gi|255651728|ref|ZP_05398630.1| putative osmoprotectant ABC transporter,substrate-binding/permease
protein [Clostridium difficile QCD-37x79]
gi|260684758|ref|YP_003216043.1| putative osmoprotectant ABC transporter substrate-binding/permease
[Clostridium difficile CD196]
gi|260688416|ref|YP_003219550.1| putative osmoprotectant ABC transporter substrate-binding/permease
[Clostridium difficile R20291]
gi|306521526|ref|ZP_07407873.1| putative osmoprotectant ABC transporter, substrate-binding/permease
protein [Clostridium difficile QCD-32g58]
gi|260210921|emb|CBA66152.1| putative osmoprotectant ABC transporter, substrate-binding/permease
protein [Clostridium difficile CD196]
gi|260214433|emb|CBE06872.1| putative osmoprotectant ABC transporter, substrate-binding/permease
protein [Clostridium difficile R20291]
Length = 511
Score = 149 bits (375), Expect = 6e-34, Method: Composition-based stats.
Identities = 42/297 (14%), Positives = 85/297 (28%), Gaps = 31/297 (10%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
IL + + T SY + + A T+ M +++E+ G I
Sbjct: 221 ILGSLILIATIFTSYLFNPSKTQTIHIATKPMTEQYILGEMLDILIEKNTGLNVEITQGI 280
Query: 62 -LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP---------------YLEEGSIKLVAE 105
+++N DI+ Y + Y + ++
Sbjct: 281 GGGTSNIQPAMENGEFDIYPEYTGTGWNMVLKKNELYTESMFSKLQSEYKTKLKMQWTGM 340
Query: 106 NLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKF 164
Y LAV + ++I+ K +G E E + N
Sbjct: 341 YGFSNSYALAVRKEVADKY--NLKNISDLKNVSSKLTFGAEYDFYEREDGYTPLCNTYGL 398
Query: 165 SLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEA 224
+ K + + V + S ++ L + + +
Sbjct: 399 NFKD------TVDLDIGLKYQAINEGKIDVMPIFTTDGQYSVSDVIVLKD--DKNFYPSY 450
Query: 225 SVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
VVR + L++ P +S + K + + +M + NN + + V L
Sbjct: 451 QCGNVVRLEVLEENPELSEVFKMVGDILTDKEMAKMNYDVENNNLEPREVACEFLNK 507
>gi|164687917|ref|ZP_02211945.1| hypothetical protein CLOBAR_01562 [Clostridium bartlettii DSM
16795]
gi|164602330|gb|EDQ95795.1| hypothetical protein CLOBAR_01562 [Clostridium bartlettii DSM
16795]
Length = 529
Score = 149 bits (375), Expect = 6e-34, Method: Composition-based stats.
Identities = 43/302 (14%), Positives = 87/302 (28%), Gaps = 34/302 (11%)
Query: 2 YKILAVCLFLTTFSISYA----RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
K++ V L I + +T+ + + +LEE Y
Sbjct: 233 RKVIGVATALVLVFIGCGRYFFSSFAQKDTIVVGSKDYTEQLILGNIYADLLEEYTDYNI 292
Query: 58 NIKLL-AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL----------------EEGSI 100
K+ V + S+ K +DI Y L + + +
Sbjct: 293 ERKMNLGTAVLWNSMVEKKVDICADYTGTILVNIMKEEPKGSAEDVYNHVKESVAKNYDL 352
Query: 101 KLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI 159
KL+ Y LA+ + IK+Y D+ KY E + +
Sbjct: 353 KLLDPLGFNNTYTLAMEEDVAEKYNIKTYSDLVKYSDEFVFSPTLA--FENREDGLPGLT 410
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
+ K + ++ S + + V ++ + + L + +
Sbjct: 411 KVYNMNFKDVKSMDGSLR------YQALTSGQAQVIDAFSTDGLLEKFKLRVLKD--DKN 462
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
F +V D L+K P I ++ + K ++ + + + V L
Sbjct: 463 YFPPYYAVPIVNQDILEKYPEIEDVVNKLAGKIDEKTMTKLNYKVDELGESPETVAHDFL 522
Query: 278 RT 279
Sbjct: 523 VE 524
>gi|302388813|ref|YP_003824634.1| Substrate-binding region of ABC-type glycine betaine transport
system [Thermosediminibacter oceani DSM 16646]
gi|302199441|gb|ADL07011.1| Substrate-binding region of ABC-type glycine betaine transport
system [Thermosediminibacter oceani DSM 16646]
Length = 300
Score = 149 bits (375), Expect = 6e-34, Method: Composition-based stats.
Identities = 36/304 (11%), Positives = 88/304 (28%), Gaps = 36/304 (11%)
Query: 1 MYK---ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M K + L + + + + A +T+ T + + L+ +
Sbjct: 1 MRKCVLLFISVLLIFSLTACSLGGRAEKGKIVVAGKKFTEQVILTHLLAEYLKAKMDLDV 60
Query: 58 NIKLL--AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP------------------YLEE 97
+K + + ++L +D+++ Y + Y E+
Sbjct: 61 QVKEGLGSTFILHQALVRGDVDLYVEYTGTGYLNILKNKYNPSQTPDEIYEATKKGYKEK 120
Query: 98 GSIKLVAENLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
+I + Y LA+ +K+ D+ K+ +L E +
Sbjct: 121 YNIAWLKPLGFNNTYALALRKELADQLNVKTCSDLVKHSNKLV--FGADAEFFERSDGYD 178
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+++ F+ K I+ + V ++ + L +
Sbjct: 179 ALVDTYGFNFKRAMNIDPDLQ------YEAAQKGDIDVITAFTTDARIKQFGLTVLKDDK 232
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGR 274
+VR + LD P + L ++ + E+ + + + V
Sbjct: 233 NFF--PPYYAVPIVRQEVLDANPGLEEALNKLEGILTDEKMMELNAQVNIEGKSPKQVAI 290
Query: 275 TMLR 278
L+
Sbjct: 291 DFLK 294
>gi|254416786|ref|ZP_05030535.1| ABC transporter, QAT family, substrate-binding protein, putative
[Microcoleus chthonoplastes PCC 7420]
gi|196176332|gb|EDX71347.1| ABC transporter, QAT family, substrate-binding protein, putative
[Microcoleus chthonoplastes PCC 7420]
Length = 304
Score = 149 bits (375), Expect = 6e-34, Method: Composition-based stats.
Identities = 41/293 (13%), Positives = 88/293 (30%), Gaps = 31/293 (10%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--LLA 63
+ LF S ++ +R + + M +++LEE G+ K L
Sbjct: 12 LLTLFAIATLSSCGGNSAESGAIRVGSKDFAEQFILGEMYALVLEEE-GFPVERKLNLGG 70
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIA----------------PYLEEGSIKLVAENL 107
VT SLK+ ID++ Y L + Y E+ +++ +
Sbjct: 71 TQVTHESLKSGEIDLYPEYTGTGLITILKRPRNSDSQEVYKIVSQEYAEQFNLEWLEPAP 130
Query: 108 QGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
Y L + + K+ G + +
Sbjct: 131 MNNTYTLFMTPDDAEQYGIETISDI-VPQANELKMVGTYEFQGRPDGLSGLKQVYG---- 185
Query: 168 GFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV 226
A A + + + + + + + S LN+ + + V
Sbjct: 186 --DFKLAEYKAVNAALRYQALAQDQADIAVGFATDGEVSALNLVRIKDDKNFF--PPYEV 241
Query: 227 YTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
VVR + L++ P I+ +L + + + + +++ V + L
Sbjct: 242 APVVRQEVLEENPEIATILNKLSATITDETMQRLNYQVTGKQREPGEVAKEFL 294
>gi|163940069|ref|YP_001644953.1| substrate-binding region of ABC-type glycine betaine transport
system [Bacillus weihenstephanensis KBAB4]
gi|163862266|gb|ABY43325.1| Substrate-binding region of ABC-type glycine betaine transport
system [Bacillus weihenstephanensis KBAB4]
Length = 503
Score = 149 bits (375), Expect = 7e-34, Method: Composition-based stats.
Identities = 30/300 (10%), Positives = 85/300 (28%), Gaps = 32/300 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+++ + + + A ++ M ++E+ + +K
Sbjct: 209 KRVILTICIVVVMIAAPFLWNTEKKDIVIAGKLGSEPEILIQMYKQLIEQDTDLQVELKP 268
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL-----------------EEGSIKL 102
F +LK+ +DI+ + +L F+ ++ ++ +
Sbjct: 269 GLGKTAFVFEALKSGEVDIYPEFSGTALSTFVKEEPKSTNRDEVYEQARIGMEKKYNMVM 328
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
+ Y LA+ + E D +
Sbjct: 329 LKPMEYNNTYALAMPKKIADQNNINTI--------SDLGKIAQEAKVGFTLEFADREDGY 380
Query: 163 KFSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
K K + ++ ++ ++ V ++ + L + +
Sbjct: 381 KGMQKLYNYKFSNVKTMEPKLRYSAIQSGDVNVIDAYSTDSELEQYGLKVLKDDKGLF-- 438
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++R + L K P + ++L + K + +M + N + + V + L+
Sbjct: 439 PPYQGAPLLRKETLQKYPELEKVLNKLSGKITDEEMRKMNYEVNVNGKSSEEVAKQFLQK 498
>gi|154503106|ref|ZP_02040166.1| hypothetical protein RUMGNA_00929 [Ruminococcus gnavus ATCC 29149]
gi|153796100|gb|EDN78520.1| hypothetical protein RUMGNA_00929 [Ruminococcus gnavus ATCC 29149]
Length = 300
Score = 149 bits (375), Expect = 7e-34, Method: Composition-based stats.
Identities = 41/299 (13%), Positives = 84/299 (28%), Gaps = 33/299 (11%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
KI AV L + P++ A T+ M + ++EE GY+ +
Sbjct: 4 KKIAAVLLAGAMVVGIAGCAKEKEEPIKIATKPMTEQYILGEMLTQLIEEQTGYEVELTK 63
Query: 62 ---LAVPVTFRSLKNKGIDIFMGYWYPSLEKFI-----------------APYLEEGSIK 101
+++ D++ Y + Y +E +
Sbjct: 64 GIGGGTSNIQPAMEKGEFDLYPEYTSSGWIMVLGHEAGEVSDEEMLSKLQEEYEKEFDMT 123
Query: 102 LVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN 160
+ Y + +++ D+AK +L G E +
Sbjct: 124 WIGLYGFNNTYAVVTTKEAADQYQLETCSDLAKVSDQLV--FGGNPDYIERADGFPGLSK 181
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISG 220
+ +A + + V + S ++ L + +
Sbjct: 182 AYGLNF------KAVKDIDIGLKYEALKKGDIDVTNGYTTDAQISRDDVKVLKD--DKNY 233
Query: 221 FGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
TVVR D L+K P + L+ + + E+ + +D V + L
Sbjct: 234 QTNYYCSTVVRKDALEKYPKLEETLELMDGILTDEKMAELNYQVEEEGKDEAEVAKEFL 292
>gi|229059945|ref|ZP_04197319.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus
AH603]
gi|228719358|gb|EEL70962.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus
AH603]
Length = 503
Score = 148 bits (374), Expect = 7e-34, Method: Composition-based stats.
Identities = 29/300 (9%), Positives = 85/300 (28%), Gaps = 32/300 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+++ + + + A ++ M ++E+ + +K
Sbjct: 209 KRVILTICIVVVMIAAPFLWNTEKKDIVIAGKLGSEPEILIQMYKQLIEQDTDLQVELKP 268
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL-----------------EEGSIKL 102
F +LK+ +DI+ + +L F+ ++ ++ +
Sbjct: 269 GLGKTAFVFEALKSGEVDIYPEFSGTALSTFVKEEPKSTNRDEVYEQARIGMEKKYNMVM 328
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
+ Y LA+ + E D +
Sbjct: 329 LKPMEYNNTYALAMPKKIADQNNINTI--------SDLGKIAQEAKVGFTLEFADREDGY 380
Query: 163 KFSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
K K + ++ ++ ++ V ++ + L + +
Sbjct: 381 KGMQKLYNYKFSNVKTMEPKLRYSAIQSGDVNVIDAYSTDSELEQYGLKVLKDDKGLF-- 438
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++R + L K P + ++L + K + +M + + + + V + L+
Sbjct: 439 PPYQGAPLLRKETLQKYPELEKVLNKLSGKITDEEMRKMNYEVNVDGKSSEEVAKQFLQK 498
>gi|311067051|ref|YP_003971974.1| glycine betaine/L-proline ABC transporter binding protein [Bacillus
atrophaeus 1942]
gi|310867568|gb|ADP31043.1| glycine betaine/L-proline ABC transporter binding protein [Bacillus
atrophaeus 1942]
Length = 507
Score = 148 bits (374), Expect = 7e-34, Method: Composition-based stats.
Identities = 33/303 (10%), Positives = 82/303 (27%), Gaps = 34/303 (11%)
Query: 2 YKIL----AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
KI+ V + A ++ M +++E+
Sbjct: 207 KKIITGIGIVAAAALLIMAFSLSSGQGNKNIVIAGKLGSEPEILINMYKLLIEQETDLHV 266
Query: 58 NIKL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP-----------------YLEEG 98
+K F +L++ +DI+ + ++ +F+ E+
Sbjct: 267 ELKPGLGKTSFVFNALRSGDVDIYPEFTGTAISEFLKETPVSTDEKQVYEQARKGMHEKF 326
Query: 99 SIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
++L+ Y LAV K +E + +E + +
Sbjct: 327 DMELLKPMEYNNTYALAVPQQFAKKHNLKTISELKSLQENIKAGFTLE-FADREDGYRGI 385
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ +E + A+ ++ + L +
Sbjct: 386 QKTYGITFSNVVTMEPKLR------YNAIKTGDIALVDAYSTDSELKQYKLSVLKD--DK 437
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F ++R + ++K P + L + K + EM + + + +
Sbjct: 438 HVFPPYQGAPLLRKETVEKYPELEAALNKLSGKITDNKMREMNYEVNVEGKSAEEAAKGF 497
Query: 277 LRT 279
L+
Sbjct: 498 LKE 500
>gi|297172825|gb|ADI23788.1| ABC-type proline/glycine betaine transport systems, periplasmic
components [uncultured gamma proteobacterium
HF4000_47G05]
Length = 322
Score = 148 bits (374), Expect = 8e-34, Method: Composition-based stats.
Identities = 48/317 (15%), Positives = 105/317 (33%), Gaps = 33/317 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
K+ L + ++ + WT + ++LEE L YK +
Sbjct: 8 RKLSGAVLIALAVFSAPMSSYAGKGILKLHEADWTGNLVFANLAQILLEEELDYKAKLIF 67
Query: 62 LAVPV-TFRSLKNKGID----IFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ + +L +D + Y + EK++ Y +GS++LV V
Sbjct: 68 MPGGAGAWEALAAGDLDMGFEFWPNYNIGTKEKYMTEYGGDGSVELVTRTGVIGASDYWV 127
Query: 117 NDVGFA-----------LGIKSYQDIAKYKKEL-------GAKIYGIEPGNEGNQRILDM 158
+KS++D+ KYK ++ G D
Sbjct: 128 PRYVIEGDTARGIKAVAPDLKSWEDLNKYKSIFATVETGGRGRLVGCPTPAW---DCQDQ 184
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE- 217
+ + + ++ A ++++ P + +W P I + ++ + E
Sbjct: 185 PRLDALGIDFQAVELGTDTALWAELEGAYSRGEPILIYAWAPMWIFAKYDLVSMSLPENT 244
Query: 218 ------ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQF 271
G+ + + DK P+ LLKN+ + + M+ + +K +
Sbjct: 245 DGKCWPACGWATDNTFHAANPGLKDKAPDAYALLKNVHLTNDQQAPMIFDVDVDKMSPEE 304
Query: 272 VGRTMLRTHPDLLKNWL 288
R + ++ + + WL
Sbjct: 305 AVRKWMASNESIWRAWL 321
>gi|209547285|ref|YP_002279203.1| Substrate-binding region of ABC-type glycine betaine transport
system [Rhizobium leguminosarum bv. trifolii WSM2304]
gi|209538529|gb|ACI58463.1| Substrate-binding region of ABC-type glycine betaine transport
system [Rhizobium leguminosarum bv. trifolii WSM2304]
Length = 283
Score = 148 bits (374), Expect = 9e-34, Method: Composition-based stats.
Identities = 44/288 (15%), Positives = 100/288 (34%), Gaps = 12/288 (4%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M + +S + W D+ T +T +LE+ GY +
Sbjct: 1 MKTLWKALCAAAVIGMSILPARAEEKTINLGTMSWEDLTPITGITKKVLEDA-GYTVKVT 59
Query: 61 LLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ + + +L I + + + ++ ++ G +AV
Sbjct: 60 EFSEWGIAYAALAKGDIQALTSQTDYVAQDYWDK--NKNRLEKISPVSHGLYQGVAVPKY 117
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
I S + + + + G KI GIEPG + + + + L +L+E S A
Sbjct: 118 VP---IDSLEQLNENADKFGGKIIGIEPGAGLMRDTANAVKDYGLKL---QLVEGSTAAM 171
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+ ++ WEP + + YL + + ++ Y + + ++ P
Sbjct: 172 TAALKSAYDRKEWIAVTIWEPSWMVQKYEVKYLKDPKGVFPPPQSY-YWIGHKGFSEEYP 230
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
+ ++ ++ +A + + + + + + TH DL+K W
Sbjct: 231 HAREVMASVYVPIADITTINGEV-KDGKTMDQAVQDWIGTHADLIKRW 277
>gi|83590521|ref|YP_430530.1| substrate-binding region of ABC-type glycine betaine transport
system [Moorella thermoacetica ATCC 39073]
gi|83573435|gb|ABC19987.1| Substrate-binding region of ABC-type glycine betaine transport
system [Moorella thermoacetica ATCC 39073]
Length = 304
Score = 148 bits (373), Expect = 9e-34, Method: Composition-based stats.
Identities = 45/298 (15%), Positives = 94/298 (31%), Gaps = 33/298 (11%)
Query: 3 KILAVC--LFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
K++A+ + + F + + V +T+ + + ++E K K
Sbjct: 10 KLIALFTGIAMLLFVAAGCSGTRAKGTVVVGSKDFTENILLGEIMAQLIEAHTDLKVERK 69
Query: 61 --LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP----------------YLEEGSIKL 102
L V F +LK +D++ Y L + Y E+ +K
Sbjct: 70 LNLGGTLVNFNALKKGDLDLYADYTGTGLVAILKRDVINDPQEAYDAVQKAYNEQFKLKW 129
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINN 161
+ Y LAV + ++ Q I+ K G + G E +I
Sbjct: 130 LKPFGFNNTYALAVPEEVARQ--RNLQKISDLKSVAGEMVLGAEQEFFNRPDGYDGLIVT 187
Query: 162 NKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
+ ++++ N + V ++ + L + F
Sbjct: 188 YGLNF------KSTKQMETGLKYEAIHNKMVDVIDAFATDGQLITYKLKILED--DKQFF 239
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+VR D L+K P + +L + + + ++ + K++ V R L
Sbjct: 240 PPYFAAPLVRMDTLEKYPQLEEVLNKLAGQLNDDEMRQLNYQVDEEKKEVAQVARDFL 297
>gi|310657343|ref|YP_003935064.1| glycine betaine ABC transporter substrate-binding protein
[Clostridium sticklandii DSM 519]
gi|308824121|emb|CBH20159.1| Substrate-binding region of ABC-type glycine betaine transport
system precursor [Clostridium sticklandii]
Length = 295
Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats.
Identities = 47/301 (15%), Positives = 88/301 (29%), Gaps = 32/301 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M +ILA + A + V A ++ M S+++E K K
Sbjct: 1 MKRILAGLILTAILLTLTACSSQEPKTVVIASKPHSEQYILAEMLSLLIENHTDIKVEKK 60
Query: 61 L---LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP----------------YLEEGSIK 101
L ++ + DI+ Y L + YLEE +IK
Sbjct: 61 LGIGGGTSNIHPAMLSGDFDIYPEYTGTGLLFVLKEDLITDSDELYKRVQDRYLEEYNIK 120
Query: 102 LVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMIN 160
+ Y LAV + + + ++G E E + + +
Sbjct: 121 WLGLYGFNNTYALAVKESTAQTY--NLETYDDLALASKDLVFGAEHDFFERDDGYEALKD 178
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISG 220
F K + ++ V ++ + N+ L +
Sbjct: 179 VYGFEFKDTK------EMDIGLKYEAIGSDEVDVINAFSTDGLIKQYNLKVLEDNKNFF- 231
Query: 221 FGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLR 278
T++R + LDK P + +L + S +M + D + V L+
Sbjct: 232 -PAYQAATLIRKETLDKYPELEAVLGKLTGQISDDEMIQMNYQVEKENMDPRDVAEQFLK 290
Query: 279 T 279
Sbjct: 291 A 291
>gi|110680131|ref|YP_683138.1| glycine betaine transporter, substrate-binding protein [Roseobacter
denitrificans OCh 114]
gi|109456247|gb|ABG32452.1| glycine betaine transporter, substrate-binding protein [Roseobacter
denitrificans OCh 114]
Length = 322
Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats.
Identities = 45/329 (13%), Positives = 95/329 (28%), Gaps = 30/329 (9%)
Query: 1 MY-KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M K L L+ + A AD C V + W + T++ S ++ + +
Sbjct: 1 MKFKTFTAGLCLSAGLTAGAAYAD-CGSVSITEMDWASASVVTSVASFLMTQGYSCDVTV 59
Query: 60 KLLAVPVTFRSLKN-KGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
S+ DI W E + + ++L G +
Sbjct: 60 VPTTTVPAMTSVAETGQPDILTELWTSYTEVYEELVADGKLVELSKVLSDGGVEAWWIPQ 119
Query: 119 VGFA--LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR-LIEAS 175
+ + + I +G + G + + + + G S
Sbjct: 120 YLADAHPELTTLEGIKANPDLVGGLFHDCPSGWGCDITNNNNFKASGLAEAGVERFQHGS 179
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE-----------------EI 218
+ I P W P + + + +
Sbjct: 180 GETLATAIAAAYEAQEPWFGYYWAPTSVLGKYPMVQVEMPPYDEATHTCNGLEDCATPGL 239
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLR 278
S + ++V T V +D+ ++ P+++++L + F+ A E++ N + L
Sbjct: 240 SAYPRSNVVTAVTTDFSEREPDVAQMLAKMSFTNAQMGEVLAWQETNNASNEEAAVYFLT 299
Query: 279 THPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ D WL D +L +
Sbjct: 300 NYKDTWAAWLN-------DDARARLSALL 321
>gi|319891725|ref|YP_004148600.1| Choline transporter, permease protein [Staphylococcus
pseudintermedius HKU10-03]
gi|317161421|gb|ADV04964.1| Choline transporter, permease protein [Staphylococcus
pseudintermedius HKU10-03]
Length = 505
Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats.
Identities = 40/303 (13%), Positives = 95/303 (31%), Gaps = 35/303 (11%)
Query: 2 YKILAVCLFLTTFSISYARDA---DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
K+LA + F ++ + + A T+ + T M +++E+ Y +
Sbjct: 207 RKMLATLGVILLFMLAVTIAPIFSNQNERITIAGKLGTEPSIITNMYKILIEDETDYTVS 266
Query: 59 IK--LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL-----------------EEGS 99
+K + F +LK+ ID ++ + L + +
Sbjct: 267 VKDGMGKTTFLFNALKSGDIDGYLEFTGTVLGELTKESPKSKDEKEVYEQANASLENKFD 326
Query: 100 IKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ L+ Y LAV IK+ D+ K + E+ N+ +
Sbjct: 327 MSLLRPMQYNNTYALAVKRDFAEEHNIKTINDLKKVESEIKPGFTL--EFNDREDGYHAI 384
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ + + +E + + + ++ ++ L ++
Sbjct: 385 QKVYHLNFQNVKKMEPKLR------YQAIESGDINLIDAYSTDAELKQYDMVVLDDDRKV 438
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
+ + +++ P+I + L + K S EM + +D V +
Sbjct: 439 F--PPYQGAPLFKKSFIEAHPDIEKALNQLEGKISDEEMQEMNYRVAEKDEDPYDVAKAY 496
Query: 277 LRT 279
L+
Sbjct: 497 LKK 499
>gi|323465108|gb|ADX77261.1| glycine betaine/carnitine/choline transport system permease protein
[Staphylococcus pseudintermedius ED99]
Length = 505
Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats.
Identities = 40/303 (13%), Positives = 95/303 (31%), Gaps = 35/303 (11%)
Query: 2 YKILAVCLFLTTFSISYARDA---DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
K+LA + F ++ + + A T+ + T M +++E+ Y +
Sbjct: 207 RKMLATLGVILLFMLAVTIAPIFSNQNERITIAGKLGTEPSIITNMYKILIEDETDYTVS 266
Query: 59 IK--LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL-----------------EEGS 99
+K + F +LK+ ID ++ + L + +
Sbjct: 267 VKDGMGKTTFLFNALKSGDIDGYLEFTGTVLGELTKESPKSKDEKEVYEQANASLENKFD 326
Query: 100 IKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ L+ Y LAV IK+ D+ K + E+ N+ +
Sbjct: 327 MTLLRPMQYNNTYALAVKRDFAEEHNIKTINDLKKVESEIKPGFTL--EFNDREDGYHAI 384
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ + + +E + + + ++ ++ L ++
Sbjct: 385 QKVYHLNFQNVKKMEPKLR------YQAIESGDINLIDAYSTDAELKQYDMVVLDDDRKV 438
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
+ + +++ P+I + L + K S EM + +D V +
Sbjct: 439 F--PPYQGAPLFKKSFIEAHPDIEKALNQLEGKISDEEMQEMNYRVAEKDEDPYDVAKAY 496
Query: 277 LRT 279
L+
Sbjct: 497 LKK 499
>gi|149908275|ref|ZP_01896939.1| hypothetical ABC transporter, substrate binding protein [Moritella
sp. PE36]
gi|149808817|gb|EDM68750.1| hypothetical ABC transporter, substrate binding protein [Moritella
sp. PE36]
Length = 302
Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats.
Identities = 39/298 (13%), Positives = 84/298 (28%), Gaps = 31/298 (10%)
Query: 33 TGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFI 91
W + ILE + T ++ DI +W S++ +
Sbjct: 1 MNWNSATLIANIDRFILEHGFDCDAELVPGDTMPTGTAMIEKGQPDIAPEFWSNSMKSAL 60
Query: 92 APYLEEGSIKLVAENL-QGAKYMLAVNDVGFALG---------IKSYQDIAKYKKELGAK 141
+++G I+ L G + V + + + +
Sbjct: 61 DQGVKDGRIRYAGVTLSDGGEEGFWVPAYMVEKDPSLATIAGIKANAKLFEHPEDPSKSA 120
Query: 142 IYGIEPGNEGNQRILDMINNNKFSLKGFRLI-EASELASFSQIRRDQRNNIPAVFLSWEP 200
G G + + + GF LI S I + W P
Sbjct: 121 FMGCPAGWNCQISTSQLFDAMDLAASGFDLIDPGSGAGLSGSIAKAYEREEAWFGYYWAP 180
Query: 201 HPINSDLNIHYLPGG-------------------EEISGFGEASVYTVVRSDYLDKCPNI 241
+ N+ + G + + + ++V +VV ++ + P +
Sbjct: 181 TAVLGKYNMVKVDFGTGIDEKHFKECITQNDCLTPKATMYPPSAVDSVVTEEFAARAPEV 240
Query: 242 SRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDP 299
L F A NE++ + + + D ++ + + D W+ T +
Sbjct: 241 MAYLAARSFKNAQMNELLAWMEDQQADGEYSVEHFIINYEDTWSQWVDSATAKKIKKA 298
>gi|190894911|ref|YP_001985204.1| putative glycine betaine/L-proline ABC transporter
substrate-binding protein [Rhizobium etli CIAT 652]
gi|190700572|gb|ACE94654.1| probable glycine betaine/L-proline ABC transporter,
substrate-binding protein [Rhizobium etli CIAT 652]
gi|327189111|gb|EGE56297.1| putative glycine betaine/L-proline ABC transporter,
substrate-binding protein [Rhizobium etli CNPAF512]
Length = 283
Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats.
Identities = 43/288 (14%), Positives = 99/288 (34%), Gaps = 12/288 (4%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M + +S + W D+ T +T +LE+ GY +
Sbjct: 1 MKTLWKALCAAAVIGMSILPARAEEKTITLGTMAWEDLTPITGITKKVLEDA-GYTVKVT 59
Query: 61 LLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ + + +L I + + + ++ ++ G +AV
Sbjct: 60 EFSEWGIAYAALAKGDIQALTSQTDYVAQDYWDK--NKNRLEKISPVSHGLYQGVAVPKY 117
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
I S + + + + G KI GIEPG + + + L +L+E S A
Sbjct: 118 VP---IDSLEQLNENADKFGGKIIGIEPGAGLMRDTSNAVKEYGLKL---QLVEGSTAAM 171
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+ ++ WEP + + YL + + ++ Y + + ++ P
Sbjct: 172 TAALKSAYDRQEWIAVTIWEPSWMVQKYEVKYLKDPKGVFPPPQSY-YWIGHKGFSEEYP 230
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
+ ++ ++ +A + + + + + + +H DL+K W
Sbjct: 231 HAREVMASVYVPIADITTINGAV-KDGKTMDQAVQDWIGSHADLIKRW 277
>gi|228908045|ref|ZP_04071893.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus
thuringiensis IBL 200]
gi|228851463|gb|EEM96269.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus
thuringiensis IBL 200]
Length = 503
Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats.
Identities = 33/300 (11%), Positives = 88/300 (29%), Gaps = 32/300 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+++ + S + + A ++ M ++E+ +K
Sbjct: 209 KRVILTICIVCIMIASPFLWSTEKKDIVIAGKLGSEPEILIQMYKQLIEQDTDLNVQLKP 268
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL-----------------EEGSIKL 102
F +LK+ +DI+ + +L F+ ++ ++ +
Sbjct: 269 GLGKTAFVFEALKSGEVDIYPEFSGTALSTFVKEEPKSTNRDEVYDQARIGMEKKYNMVM 328
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
+ Y LA+ K+ I+ + G D +
Sbjct: 329 LKPMEYNNTYALAMPKKIADQ--KNINTISDLGNVVQEAKVG------FTLEFADREDGY 380
Query: 163 KFSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
K K + ++ ++ ++ V ++ + L + +
Sbjct: 381 KGMQKLYNYKFSNVKTMEPKLRYSAIQSGDVNVIDAYSTDSELEQYGLKVLKDDKGLF-- 438
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++R + L K P + ++L + K + +M + N + + V + L
Sbjct: 439 PPYQGAPLLRKETLQKYPELEKVLNKLSGKITDEEMRKMNYEVNVNGKSSEEVAKQFLEK 498
>gi|318062287|ref|ZP_07981008.1| putative glycine betaine ABC transporter substrate-binding and
permease component [Streptomyces sp. SA3_actG]
gi|318080400|ref|ZP_07987732.1| putative glycine betaine ABC transporter substrate-binding and
permease component [Streptomyces sp. SA3_actF]
Length = 286
Score = 148 bits (372), Expect = 1e-33, Method: Composition-based stats.
Identities = 48/270 (17%), Positives = 105/270 (38%), Gaps = 6/270 (2%)
Query: 18 YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGID 77
A + + A W + A T + +LE+ GYK N+K V + ++ +D
Sbjct: 18 GAGKDERDRAINVAWFPWEEDIAATYLWKHVLEDR-GYKMNLKQFEVGPMYAAMSRNQLD 76
Query: 78 IFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKE 137
+ W P +K + + E +AV +KS D+ +
Sbjct: 77 VQFDGWLPYTQKNYWDKYGS-KLTKIGEWYSPTSLEIAVPSYV--KDVKSLADLKGKGGK 133
Query: 138 LGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLS 197
++ GIEPG + + + + K +++++ S A S+++R P +
Sbjct: 134 FDGRVIGIEPGTATMDILKNDVLPSYGLDKEYKVVDGSTPAMLSELKRAYAKKEPIAVML 193
Query: 198 WEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENE 257
W PH + ++ L + G G+ + TV + ++ P +++ LK+ K S + +E
Sbjct: 194 WSPHWAYNQYDLTKLKDPKGSFGKGD-RITTVASKQFPEQYPQLAKWLKDFKLSDSQLSE 252
Query: 258 MMKLILNNKQDRQF-VGRTMLRTHPDLLKN 286
+ + + ++ + ++
Sbjct: 253 LENELHKQGTGHEDEAVDNWVKKNQGIVDK 282
>gi|42781378|ref|NP_978625.1| glycine betaine/L-proline ABC transporter, permease protein,
putative [Bacillus cereus ATCC 10987]
gi|42737300|gb|AAS41233.1| glycine betaine/L-proline ABC transporter, permease protein,
putative [Bacillus cereus ATCC 10987]
Length = 503
Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats.
Identities = 31/301 (10%), Positives = 85/301 (28%), Gaps = 31/301 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+++ + S + A ++ M ++E+ +K
Sbjct: 209 KRVILTICIVCIMVASPFLWNTEKKDIVIAGKLGSEPEILIQMYKQLIEQDTDLHVQLKP 268
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL-----------------EEGSIKL 102
F +LK+ +DI+ + +L F+ ++ ++ +
Sbjct: 269 GLGKTAFVFEALKSGEVDIYPEFSGTALSTFVKEEPKSTNRDEVYEQARVGMEQKYNMVM 328
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
+ Y LA+ S + + +E + M
Sbjct: 329 LKPMEYNNTYALAMPKKIADQNNISTISDLGKIAQNAKVGFTLE-FADREDGYKGMRKLY 387
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
+ + +E ++ V ++ + L + +
Sbjct: 388 NYKFSNVKTMEPKLR------YSAIQSGDVNVIDAYSTDSELEQYGLKVLKDDKGLF--P 439
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML-RT 279
++R + L K P + ++L + K + +M + N + + V + L +
Sbjct: 440 PYQGAPLLRKETLQKYPELEKVLNKLSGKITDEEMRKMNYEVNVNGKSSEEVAKQFLQKE 499
Query: 280 H 280
+
Sbjct: 500 N 500
>gi|294506326|ref|YP_003570384.1| glycine betaine ABC transporter glycine betaine-binding protein
[Salinibacter ruber M8]
gi|294342654|emb|CBH23432.1| glycine betaine ABC transporter glycine betaine-binding protein
[Salinibacter ruber M8]
Length = 339
Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats.
Identities = 59/278 (21%), Positives = 115/278 (41%), Gaps = 12/278 (4%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVT-FRSLKNKGIDIFMGYWYP 85
P++ W + A + M + +LE+ L ++K F S+ D F W P
Sbjct: 50 PLKMVTVNWIEGLAMSYMQAQVLEDSLNVPVDLKEAQGGGIAFSSVAEGDRDFFNEAWLP 109
Query: 86 SLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGI 145
+ + +G ++ + +G L V + ++S +I +Y++ LG KIYGI
Sbjct: 110 TTHQNSWG-DLQGQLQKLGYTYRGTSGGLVVPAY---MDLRSAANIGEYREALGEKIYGI 165
Query: 146 EPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINS 205
E G+ N I +++ + GF ++ AS A++ ++R ++ P + W+PH S
Sbjct: 166 EAGSPTNDNIRQVLDQHGIE--GFSVVAASGPATWQRLRSAIQDRQPIIVAGWKPHWKWS 223
Query: 206 DLNIHYLPGGEEIS---GFGEASVYTVVRSDYLDKCP-NISRLLKNIKFSVALENEMMKL 261
++ YL G+ ++TVV + ++D+ P L+ + + +M
Sbjct: 224 AFDLRYLQDGKTNQSPAYGPPEDIFTVVDNQFIDEFPKEAVCFLQKFEVTDQQIGSLMNT 283
Query: 262 ILNNK-QDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
+ +R HP+ + WL D
Sbjct: 284 FRTRGDMSKSGAAEQWVRNHPEHVTQWLDQAEACAASD 321
>gi|229074935|ref|ZP_04207942.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus
Rock4-18]
gi|229102879|ref|ZP_04233573.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus
Rock3-28]
gi|229115760|ref|ZP_04245162.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus
Rock1-3]
gi|228667643|gb|EEL23083.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus
Rock1-3]
gi|228680552|gb|EEL34735.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus
Rock3-28]
gi|228708163|gb|EEL60329.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus
Rock4-18]
Length = 503
Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats.
Identities = 29/301 (9%), Positives = 86/301 (28%), Gaps = 31/301 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+++ + + + A ++ M ++E+ + +K
Sbjct: 209 KRVILTICIVVVMIATPFLWNTQKKDIVIAGKLGSEPEILIQMYKQLIEQDTDLQVELKP 268
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL-----------------EEGSIKL 102
F +LK+ +DI+ + +L F+ ++ ++ +
Sbjct: 269 GLGKTAFVFEALKSGEVDIYPEFSGTALSTFVKEEPKSTNREEVYEQARVGMEKKYNMVM 328
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
+ Y LA+ + + + +E + M
Sbjct: 329 LNPMEYNNTYALAMPKKIADQKNINTISDLGNIAQEAKVGFTLE-FADREDGYKGMQKLY 387
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
+ + +E ++ V ++ + L + +
Sbjct: 388 NYKFLNVKTMEPKLR------YSAIQSGDVNVIDAYSTDSELEQYGLKVLKDDKGLF--P 439
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML-RT 279
++R + L K P + ++L + K + +M + N + + V + L +
Sbjct: 440 PYQGAPLLRKETLQKYPELEKVLNKLAGKITDEEMRKMNYEVNVNGKSSEEVAKQFLQKE 499
Query: 280 H 280
+
Sbjct: 500 N 500
>gi|297171485|gb|ADI22485.1| ABC-type proline/glycine betaine transport systems, periplasmic
components [uncultured gamma proteobacterium
HF0500_07A21]
Length = 315
Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats.
Identities = 53/317 (16%), Positives = 116/317 (36%), Gaps = 32/317 (10%)
Query: 1 MYKI-LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN- 58
M K+ + + T SI A + + D WT T +LE +GYK
Sbjct: 1 MSKLKAILAFAVLTMSIGILSSAQADKRLTVPDLDWTGAIVTERTIQYVLENEMGYKFKN 60
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYW---YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
+ P +++L +D W P + + Y GS+K++A+
Sbjct: 61 PTMPGGPSVWQALVAGDLDYISEVWPSYNPIRFEILEEYGGNGSLKIIADTGIIGGSGYW 120
Query: 116 VNDVGFA-----------LGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILD 157
V +KSY+D+ KYK + + G D
Sbjct: 121 VPRYVIEGDSSRGISASAPDLKSYKDLNKYKHVFKSLESGDRGTLIGCPSVAW---LCED 177
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG-E 216
+ + + + SE + ++++ + P + +W PH I + L++ +
Sbjct: 178 QKRLDLLGVDFYAQLMGSETSHWAELMAKHKRGEPFLTYAWTPHWIFAALDLVEVKLPEY 237
Query: 217 EISGFGEASVYT-----VVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQF 271
+ + + + + +++ P++ ++L+N + + + M+ + NK+D
Sbjct: 238 DEAKWPATNWAPDITFKMGNPKFIEDHPDVVKVLQNHRLTNHQQAVMIYEVDVNKRDVDE 297
Query: 272 VGRTMLRTHPDLLKNWL 288
V + + + ++WL
Sbjct: 298 VVAEWMEANESVWRSWL 314
>gi|228991262|ref|ZP_04151220.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus
pseudomycoides DSM 12442]
gi|228997361|ref|ZP_04156983.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus mycoides
Rock3-17]
gi|229004992|ref|ZP_04162719.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus mycoides
Rock1-4]
gi|228756340|gb|EEM05658.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus mycoides
Rock1-4]
gi|228762453|gb|EEM11378.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus mycoides
Rock3-17]
gi|228768486|gb|EEM17091.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus
pseudomycoides DSM 12442]
Length = 503
Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats.
Identities = 34/300 (11%), Positives = 81/300 (27%), Gaps = 32/300 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+I++ + + + A + M ++E+ +K
Sbjct: 209 KRIISAICIIVVVIAAPFLWNTQKKDIVIAGKLGAEPEILIQMYKQLIEQDTDLDVELKP 268
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP-----------------YLEEGSIKL 102
F +LK+ ID++ + +L F+ ++ + +
Sbjct: 269 GLGKTAFVFEALKSGEIDMYPEFSGTALSTFVKEDPKSTNRKEVYEQARLGMEKKYHMVM 328
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
+ Y LA+ K + D +
Sbjct: 329 LKPMEYNNTYALAMPRKVAEQY--------NVKTISDLRNVAANVKAGFTLEFADREDGY 380
Query: 163 KFSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
K K + A+ ++ + V ++ + L + +
Sbjct: 381 KGMQKLYNFQIANVTTMEPKLRYGAIESGEVTVIDAYSTDSELEQYGLQVLEDDKGLF-- 438
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++R + LDK P + + L + K S +M + N + + V + L
Sbjct: 439 PPYQGAPLLRKETLDKYPELEQTLNKLAGKISDEDMRKMNYEVNVNGKSAERVAKQFLEK 498
>gi|222445288|ref|ZP_03607803.1| hypothetical protein METSMIALI_00916 [Methanobrevibacter smithii
DSM 2375]
gi|222434853|gb|EEE42018.1| hypothetical protein METSMIALI_00916 [Methanobrevibacter smithii
DSM 2375]
Length = 514
Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats.
Identities = 36/296 (12%), Positives = 79/296 (26%), Gaps = 28/296 (9%)
Query: 2 YKILAVCLFL-TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
K+ A + + A + + + A +T+ T + ++E +
Sbjct: 221 KKVWACIIIVCILIGGYVAYEQNPANTIHIASKSYTEEYITGELLKQVIEAHTDLNVELT 280
Query: 61 L---LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPY--LEEGSIKLVAENLQGAKYMLA 115
R +++ D++ Y + + +E + + M
Sbjct: 281 SGVAGGSGTIHRGMESGDFDLYPEYTGVAWLSILHKNSTYDETQFDDLNSYYEDNYNMTW 340
Query: 116 VNDVGFA-----------LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI-NNNK 163
N GF + + + K +G E + D I +
Sbjct: 341 YNKYGFEDTYGIGVTKEVADKYNLKTYSDLAKVSNQLSFGAESDFFAREDGYDAICDAYG 400
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+ K ++ S + V + + NI L ++ +
Sbjct: 401 MNFKDTMDLDVSIK------YDAVKQGQVDVIDVYTTDGRLENSNIVVLEDDKDF--YPS 452
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
TV+ L P ++ L + S M + +D V L
Sbjct: 453 YYAGTVINQQTLIDHPEVADALDYLTGNISTEDMKHMNYEVDIEGKDPSDVAHDFL 508
>gi|229011549|ref|ZP_04168735.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus mycoides DSM
2048]
gi|228749704|gb|EEL99543.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus mycoides DSM
2048]
Length = 503
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/300 (10%), Positives = 85/300 (28%), Gaps = 32/300 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+++ + + + A ++ M ++E+ + +K
Sbjct: 209 KRVILTICIVVVMIAAPFLWNTEKKDIVIAGKLGSEPEILIQMYKQLIEQDTDLQVELKP 268
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL-----------------EEGSIKL 102
F +LK+ +DI+ + +L F+ ++ ++ +
Sbjct: 269 GLGKTAFVFEALKSGEVDIYPEFSGTALSTFVKEEPKSTNRDEVYEQARIGMEKKYNMVM 328
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
+ Y LA+ + E D +
Sbjct: 329 LKPMEYNNTYALAMPKKIADQNNINTI--------SDLGKIAQEAKVGFTLEFADREDGY 380
Query: 163 KFSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
K K + ++ ++ ++ V ++ + L + +
Sbjct: 381 KGMQKLYNYKFSNVKTMEPKLRYSAIQSGDVNVIDAYSTDSELEQYGLKVLKDDKGLF-- 438
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++R + L K P + ++L + K + +M + N + + V + L+
Sbjct: 439 PPYQGAPLLRKETLQKYPELEKVLNELSGKITDEEMRKMNYEVNVNGKSSEEVAKQFLQK 498
>gi|325521971|gb|EGD00662.1| putative glycine betaine/L-proline ABC transporter
substrate-binding protein [Burkholderia sp. TJI49]
Length = 232
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 98/225 (43%), Positives = 139/225 (61%), Gaps = 7/225 (3%)
Query: 1 MYKILAVCLFLTTFSISY-----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M ++L + + A D C VRFAD GW+DIAATT + S +L + LGY
Sbjct: 1 MKRLLIAAACGVGIAAAPVSAVHAADPPVCRNVRFADVGWSDIAATTGLASTML-QGLGY 59
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-ENLQGAKYML 114
+ +VP+TF +K+K ID+F+GYW P+++ I P+ + G+IK++A NL GAKY L
Sbjct: 60 NPTKTIASVPITFAGIKSKQIDVFLGYWSPTMDPIIQPFTKAGTIKVLATPNLTGAKYTL 119
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
AV D + G+KS+ DI KY +L KIYGIEPGN+GN I MI+ N+F L F+L+E+
Sbjct: 120 AVPDYVYQGGLKSFADIQKYADKLNGKIYGIEPGNDGNALIKKMIDGNQFGLGKFKLVES 179
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
SE ++ R R+ VFL WEPHP+N + I YL GG+++
Sbjct: 180 SEAGMLVEVNRAIRDKQWIVFLGWEPHPMNVQMKIDYLSGGDDVF 224
>gi|169335298|ref|ZP_02862491.1| hypothetical protein ANASTE_01710 [Anaerofustis stercorihominis DSM
17244]
gi|169258036|gb|EDS72002.1| hypothetical protein ANASTE_01710 [Anaerofustis stercorihominis DSM
17244]
Length = 519
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/294 (10%), Positives = 82/294 (27%), Gaps = 29/294 (9%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKL 61
I+ C+ L S + + + +T+ + MT ++EE + L
Sbjct: 228 IILTCIALIFGSFYNFKQSSGGKTINLGSMDFTEQEVLSYMTKELIEENTDINVKQSLSL 287
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFI----------------APYLEEGSIKLVAE 105
A + ++K+ ID+++ Y + + ++ +
Sbjct: 288 GASGIVLDAMKSGDIDMYIDYTGTLFGSVLAHENINDMKKVLDTCKKEMKSKYNLNVYDS 347
Query: 106 NLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFS 165
Y LAV + + K+ ++ +
Sbjct: 348 LNFNNTYTLAVRKDTAKKYNLKKFS---DLERVADKLTLSPTLTFMERKDCYKSLQKTYG 404
Query: 166 LKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEAS 225
+ ++ +N V ++ + ++ L +
Sbjct: 405 MNFKEVVPIDGSPR----YTALKNKNCDVIDAYSTDGLLKKYDLVVLEDDKGAF--PRYE 458
Query: 226 VYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
VV ++CP + L++ + + + ++ + + + V L
Sbjct: 459 AVPVVNDTVNEECPEVKGLMEKLSKYLNEDVMIDLNYQVDVEGKKAKDVAHEFL 512
>gi|229029999|ref|ZP_04186064.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus
AH1271]
gi|228731260|gb|EEL82177.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus
AH1271]
Length = 503
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/302 (9%), Positives = 84/302 (27%), Gaps = 33/302 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+++ S + A ++ M ++E+ +K
Sbjct: 209 KRVILTICIACIMIASPFLWNTQKKDIVIAGKLGSEPEILIQMYKQLIEQDTDLHVELKP 268
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL-----------------EEGSIKL 102
F +LK+ +DI+ + +L F+ ++ + +
Sbjct: 269 GLGKTSFVFEALKSGEVDIYPEFSGTALSTFVKEEPKSTNRDEVYEQARTGMEKKYDMVM 328
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
+ Y LA+ + + D +
Sbjct: 329 LKPMEYNNTYALAMPKKIADQNNINTI--------SDLGKIAQDAKVGFTLEFADREDGY 380
Query: 163 KFSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
K K ++ ++ ++ ++ V ++ + L + +
Sbjct: 381 KGMQKLYKYKFSNVKTMEPKLRYSAIQSGDVNVIDAYSTDSELEQYGLKVLKDDKGLF-- 438
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML-R 278
++R + L K P + ++L + K + +M + N + + V + L +
Sbjct: 439 PPYQGAPLLRKETLQKYPELEKVLNKLFGKITDEEMRKMNYEVNVNGKGSEEVAKQFLQK 498
Query: 279 TH 280
+
Sbjct: 499 EN 500
>gi|148643051|ref|YP_001273564.1| nitrate/sulfonate/bicarbonate ABC transporter, substrate-binding
component [Methanobrevibacter smithii ATCC 35061]
gi|148552068|gb|ABQ87196.1| nitrate/sulfonate/bicarbonate ABC transporter, substrate-binding
component [Methanobrevibacter smithii ATCC 35061]
Length = 514
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 33/290 (11%), Positives = 72/290 (24%), Gaps = 16/290 (5%)
Query: 2 YKILAVCLFL-TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
K+ A + + A + + + A +T+ T + ++E +
Sbjct: 221 KKVWACIIIVCILIGGYVAYEQNPANTIHIASKSYTEEYITGELLKQVIEAHTDLNVELT 280
Query: 61 L---LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPY--LEEGSIKLVAENLQGAKYMLA 115
R +++ D++ Y + + +E + + M
Sbjct: 281 SGVAGGSGTIHRGMESGDFDLYPEYTGVAWLSILHKNSTYDETQFDDLNSYYEDNYNMTW 340
Query: 116 VNDVGFALGI-----KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
N GF K D K + + +
Sbjct: 341 YNKYGFEDTYGIGVTKEVADKYNLKTYSDLAKVSNQLSFGAESDFFAREDGYDAICDDYG 400
Query: 171 LIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV 229
+ + I + V + + NI L ++ + TV
Sbjct: 401 MNFKDTMDLDVSIKYDAVKQGQVDVIDVYTTDGRLENSNIVVLEDDKDF--YPSYYAGTV 458
Query: 230 VRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
+ L P ++ L + S M + +D V L
Sbjct: 459 INQQTLIDHPEVADALDYLTGNISTEDMKHMNYEVDIEGKDPSDVAHDFL 508
>gi|229167113|ref|ZP_04294856.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus
AH621]
gi|228616347|gb|EEK73429.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus
AH621]
Length = 503
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/300 (10%), Positives = 85/300 (28%), Gaps = 32/300 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+++ + + + A ++ M ++E+ + +K
Sbjct: 209 KRVILTICIVVVMIAAPFLWNTEKKDIVIAGKLGSEPEILIQMYKQLIEQDTDLQVELKP 268
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL-----------------EEGSIKL 102
F +LK+ +DI+ + +L F+ ++ ++ +
Sbjct: 269 GLGKTAFVFEALKSGEVDIYPEFSGTALSTFMKEEPKSTNRDEVYEQARIGMEKKYNMVM 328
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
+ Y LA+ + E D +
Sbjct: 329 LKPMEYNNTYALAMPKKIADQNNINTI--------SDLGKIAQEAKVGFTLEFADREDGY 380
Query: 163 KFSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
K K + ++ ++ ++ V ++ + L + +
Sbjct: 381 KGMQKLYNYKFSNVKTMEPKLRYSAIQSGDVNVIDAYSTDSELEQYGLKVLKDDKGLF-- 438
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++R + L K P + ++L + K + +M + N + + V + L+
Sbjct: 439 PPYQGAPLLRKETLQKYPELEKVLNELSGKITDEEMRKMNYEVNVNGKSSEEVAKQFLQK 498
>gi|229069808|ref|ZP_04203091.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus
F65185]
gi|228713343|gb|EEL65235.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus
F65185]
Length = 503
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 33/302 (10%), Positives = 88/302 (29%), Gaps = 33/302 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+++ + S + + A ++ M ++E+ +K
Sbjct: 209 KRVILTICIVCIMIASPFLWSTEKKDIVIAGKLGSEPEILIQMYKQLIEQDTDLHVQLKP 268
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL-----------------EEGSIKL 102
F +LK+ +DI+ + +L F+ ++ ++ +
Sbjct: 269 GLGKTAFVFEALKSGEVDIYPEFSGTALSTFVKEEPKSTNRDEVYEQARVGMEKKYNMIM 328
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
+ Y LA+ K+ I+ G D +
Sbjct: 329 LKPMEYNNTYALAMPKKIADQ--KNINTISDLGNVAQEAKVG------FTLEFADREDGY 380
Query: 163 KFSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
K K + ++ ++ + V ++ + L + +
Sbjct: 381 KGMQKLYNYKFSNVKTMEPKLRYSAIESGDVNVIDAYSTDSELEQYGLKVLKDDKGLF-- 438
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML-R 278
++R + L K P + ++L + K + +M + N + + V + L +
Sbjct: 439 PPYQGAPLLRKETLQKYPELEKVLNKLSGKITDEEMRKMNYEVNVNGKSSEEVAKQFLQK 498
Query: 279 TH 280
+
Sbjct: 499 EN 500
>gi|229096778|ref|ZP_04227748.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus
Rock3-29]
gi|228686620|gb|EEL40528.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus
Rock3-29]
Length = 503
Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats.
Identities = 30/301 (9%), Positives = 86/301 (28%), Gaps = 31/301 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+++ + + + A ++ M ++E+ + +K
Sbjct: 209 KRVILTICIVVVMIATPFLWNTQKKDIVIAGKLGSEPEILIQMYKQLIEQDTDLQVELKP 268
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL-----------------EEGSIKL 102
F +LK+ +DI+ + +L F+ ++ ++ +
Sbjct: 269 GLGKTAFVFEALKSGEVDIYPEFSGTALSTFVKEEPKSTNREEVYEQARVGMEKKYNMVM 328
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
+ Y LA+ + + + +E + M
Sbjct: 329 LNPMEYNNTYALAMPKKIADQKNINTISDLGNIAQEAKVGFTLE-FADREDGYKGMQKLY 387
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
+ + +E ++ V ++ + L + +
Sbjct: 388 NYKFLNVKTMEPKLR------YSAIQSGDVNVIDAYSTDSELEQYGLKVLKDDKGLF--P 439
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML-RT 279
++R + L K P + ++L + K S +M + N + + V + L +
Sbjct: 440 PYQGAPLLRKETLQKYPELEKVLNKLAGKISDEEMRKMNYEVNVNGKSSEEVAKQFLQKE 499
Query: 280 H 280
+
Sbjct: 500 N 500
>gi|206971626|ref|ZP_03232576.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Bacillus cereus AH1134]
gi|206733611|gb|EDZ50783.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Bacillus cereus AH1134]
Length = 503
Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats.
Identities = 33/294 (11%), Positives = 86/294 (29%), Gaps = 17/294 (5%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+++ + S + + A ++ M ++E+ +K
Sbjct: 209 KRVILTICIVCIMIASPFLWSTEKKDIVIAGKLGSEPEILIQMYKQLIEQDTDLHVQLKP 268
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAE---NLQGAKYMLAV 116
F +LK+ +DI+ + +L F+ + ++ V E KY + +
Sbjct: 269 GLGKTAFVFEALKSGEVDIYPEFSGTALSTFVKEEPKSTNLDEVYEQARVGMEKKYNMIM 328
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGI------EPGNEGNQRILDMINNNKFSLKGFR 170
+ K + E D + K K +
Sbjct: 329 LKPMEYNNTYALAMPKKIADQKNINTISDLGNVAQEAKVGFTLEFADREDGYKGMQKLYN 388
Query: 171 LIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV 229
++ ++ + V ++ + L + + +
Sbjct: 389 YKFSNVKTMEPKLRYSAIESGDVNVIDAYSTDSELEQYGLKVLKDDKGLF--PPYQGAPL 446
Query: 230 VRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML-RTH 280
+R + L K P + ++L + K + +M + N + + V + L + +
Sbjct: 447 LRKETLQKYPELEKVLNKLSGKITDEEMRKMNYEVNVNGKSSEEVAKQFLQKEN 500
>gi|145594189|ref|YP_001158486.1| substrate-binding region of ABC-type glycine betaine transport
system [Salinispora tropica CNB-440]
gi|145303526|gb|ABP54108.1| Substrate-binding region of ABC-type glycine betaine transport
system [Salinispora tropica CNB-440]
Length = 323
Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats.
Identities = 44/309 (14%), Positives = 89/309 (28%), Gaps = 28/309 (9%)
Query: 5 LAVCLFLTTFSISYA-------RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
L+ L + +A C A W A A+ + + E LG K
Sbjct: 15 LSTVAALALTACGGTKIESTDPAEAGDCGTFTIAINPWVGYEANAAVIAHVAETELGCKV 74
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQG--AKYMLA 115
K L + ++ +D + W + E V G
Sbjct: 75 VKKDLKEEIAWQGFGTGQVDAIVENWG---HDDLKKKYIEDQKTAVNAGSTGVEGVIGWY 131
Query: 116 VNDVGFA--LGIKSYQDIAKYKKELGAKIYGIEPG---NEGNQRILDMINNNKFSLKGFR 170
V I + ++ KY G + + + D L
Sbjct: 132 VPPWMAEEYPDITDWNNLNKYASLFETTESGGKGQLLDGDPSFVTNDEALVKNLGLDYQV 191
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE-----------IS 219
+ SE A R+ ++ P + ++P S++ + + E
Sbjct: 192 VYAGSEPALIQAFRQAEQEKKPVLGYFYDPQWFLSEIELVKVNLPEYEEGCDADPEKVAC 251
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+ + +V + D +L+ N +S +N + + I + + +
Sbjct: 252 DYPVYDLDKIVSKSFADANGPAYQLVDNFNWSNEDQNVVARYIAQDNMSPEEAAEKWVEA 311
Query: 280 HPDLLKNWL 288
+ D ++ WL
Sbjct: 312 NKDKVEAWL 320
>gi|227832441|ref|YP_002834148.1| glycine betaine-binding periplasmic protein [Corynebacterium
aurimucosum ATCC 700975]
gi|262183696|ref|ZP_06043117.1| glycine betaine-binding periplasmic protein [Corynebacterium
aurimucosum ATCC 700975]
gi|227453457|gb|ACP32210.1| glycine betaine-binding periplasmic protein [Corynebacterium
aurimucosum ATCC 700975]
Length = 299
Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats.
Identities = 58/301 (19%), Positives = 109/301 (36%), Gaps = 25/301 (8%)
Query: 2 YKILAVCLFLTTFSISYAR------------DADSCTPVRFADTG-WTDIAATTAMTSVI 48
KILA + + A + + WTD +T +
Sbjct: 4 RKILATVSAVALSASLVACSSDSSDSASDSGNDGDKGTITMGYIPSWTDGLSTAYLLQNK 63
Query: 49 LEEILGYKTNI-KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL 107
LEE GY +L V + +L + IDI+ W K + I+
Sbjct: 64 LEEA-GYTVEHEQLNDAAVVYTALASGDIDIYPSAWSEFTHKQYMDKYSD-KIEDYGAYY 121
Query: 108 QGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
A+ AV + + S +D+ G +I GIEPG + + I+ +
Sbjct: 122 GNARLTWAVPEYMDD--VNSIEDLKGQADRFGGQIVGIEPGAGLTKASQETIDGYELD-- 177
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
G+ L +S A S+++ V W P N+ ++ L + G E ++
Sbjct: 178 GYNLSTSSTPAMLSELKSATDAEEDIVVTLWRPFWANAKFPVNDLEDPKGTLGDTEG-LH 236
Query: 228 TVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILN---NKQDRQFVGRTMLRTHPDLL 284
+ R + + P ++ LK +K + L++N ++ + + L +PD++
Sbjct: 237 WLARDGFEEDNPEVAEWLKGLKLDDEQYGTLEDLVVNEYGEGKEPE-AVQDWLDKNPDVV 295
Query: 285 K 285
+
Sbjct: 296 E 296
>gi|271963330|ref|YP_003337526.1| proline/glycine betaine ABC transporter periplasmic component-like
protein [Streptosporangium roseum DSM 43021]
gi|270506505|gb|ACZ84783.1| ABC-type proline/glycine betaine transport systems periplasmic
components-like protein [Streptosporangium roseum DSM
43021]
Length = 308
Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats.
Identities = 43/308 (13%), Positives = 91/308 (29%), Gaps = 22/308 (7%)
Query: 1 MYKILAVCLFLTTFSISYA----RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
M + LA + + + V+ A GW A+ A+ +LE+ LGY+
Sbjct: 1 MRRQLAGVVTALLLLTACGGEREAPPPTGGTVKIAINGWAGYEASAAVLGRLLEQELGYE 60
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
L ++ L+ +D+ + W + E+ N V
Sbjct: 61 VRRVELNEAESWEGLEKGTVDVIVENWG-REAEKKTYIEEKKVAVSAGRNGNKGVIGWYV 119
Query: 117 NDVGFA--LGIKSYQDIAKYKKELGAKIYGIEPG---NEGNQRILDMINNNKFSLKGFRL 171
I ++ + KY G + + D L +
Sbjct: 120 PQWMADRYPDITDWRKLNKYAHLFKTDKSGNFGQLLDGDASYVTNDEALVRNLGLDYKVV 179
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE-----------ISG 220
SE A + RN P + +EP + + + + +
Sbjct: 180 YAGSEKALIKAAKLATRNRTPLLMYFYEPQWLFTQIKLAKINLPPYAIGCDADAAKVACD 239
Query: 221 FGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ + +V + D L++N ++ +N + + R + +
Sbjct: 240 YPPYLLDKIVSRRFADTGGRAYELVRNFTWTNDQQNAVADDMT-GGLSADQAARKWIEAN 298
Query: 281 PDLLKNWL 288
+ K+W+
Sbjct: 299 KIVWKDWM 306
>gi|222095877|ref|YP_002529934.1| glycine betaine/choline ABC transporter , ATP-binding protein
[Bacillus cereus Q1]
gi|221239935|gb|ACM12645.1| glycine betaine/choline ABC transporter, ATP-binding protein
[Bacillus cereus Q1]
Length = 503
Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats.
Identities = 32/301 (10%), Positives = 85/301 (28%), Gaps = 31/301 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+++ + S + A ++ M ++E+ +K
Sbjct: 209 KRVILTICIVCIMVASPFLWNTEKKDIVIAGKLGSEPEILIQMYKQLIEQDTDLHVQLKP 268
Query: 62 L--AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE-----------------EGSIKL 102
F +LK+ +DI+ + +L F+ + + S+ +
Sbjct: 269 GLGKTSFVFEALKSGEVDIYPEFSGTALSTFVKEEPKSTNRNEVYEQARVGMEKKYSMVM 328
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
+ Y LA+ S + + +E + M
Sbjct: 329 LKPMEYNNTYALAMPKKIADQKNISTISDLGNIAQDAKVGFTLE-FADREDGYKGMQKIY 387
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
+ + +E ++ V ++ + L + +
Sbjct: 388 NYKFSNVKTMEPKLR------YSAIQSGDVNVIDAYSTDSELEQYGLKVLKDDKGLF--P 439
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML-RT 279
++R + L K P + ++L + K + +M + N + + V + L +
Sbjct: 440 PYQGAPLLRKETLQKYPELEKVLNKLSGKITDEEMRKMNYEVNVNGKSSEEVAKQFLQKE 499
Query: 280 H 280
+
Sbjct: 500 N 500
>gi|210612305|ref|ZP_03289253.1| hypothetical protein CLONEX_01454 [Clostridium nexile DSM 1787]
gi|210151679|gb|EEA82686.1| hypothetical protein CLONEX_01454 [Clostridium nexile DSM 1787]
Length = 308
Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats.
Identities = 46/307 (14%), Positives = 89/307 (28%), Gaps = 40/307 (13%)
Query: 1 MYKILAVCLFLTTFSISYARDADSC-------TPVRFADTGWTDIAATTAMTSVILEEIL 53
+ K+ A L + + ++ ++ A T+ M ++E
Sbjct: 4 LKKVAACLLVVVMTVSAAGCGSEKKETGKGITGTIKIATKPMTEQYILGEMLKQLIENKT 63
Query: 54 GYKTNIKL---LAVPVTFRSLKNKGIDIFMGYWYPSLEKFI-----------------AP 93
YK + +++ D++ Y +
Sbjct: 64 DYKVEVTKGIGGGTSNIHPAMEKGEFDLYPEYTSSGWVMVLGNQAGEVSDDEILEKLQKE 123
Query: 94 YLEEGSIKLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGN 152
Y E+ + + Y LAV+ +K+ D+AK K+L G E
Sbjct: 124 YQEKFQMTWLGLYGFNNTYALAVSKKVADKYQLKNCSDLAKVSKDLV--FGGNPDYIERE 181
Query: 153 QRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYL 212
+ K + + N+ V + S NI L
Sbjct: 182 DGFPGVCKAYGLEFKNVK------DIDIGLKYKAMENDDIQVTNGFTTDAQISKDNIVVL 235
Query: 213 PGGEEISGFGEASVYTVVRSDYLDKCPNISR--LLKNIKFSVALENEMMKLILNNKQDRQ 270
+ TVVR + L+K P++ + +L N S E+ + + +D
Sbjct: 236 EDDKGYQVN--YFCSTVVREETLEKYPDLEKTLMLMNGILSDQEMAELNYQVEIDGKDEA 293
Query: 271 FVGRTML 277
V + L
Sbjct: 294 VVAKDFL 300
>gi|218897248|ref|YP_002445659.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Bacillus cereus G9842]
gi|228965255|ref|ZP_04126349.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus
thuringiensis serovar sotto str. T04001]
gi|218544265|gb|ACK96659.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Bacillus cereus G9842]
gi|228794489|gb|EEM42001.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus
thuringiensis serovar sotto str. T04001]
Length = 503
Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats.
Identities = 32/294 (10%), Positives = 86/294 (29%), Gaps = 17/294 (5%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+++ + S + + A ++ M ++E+ +K
Sbjct: 209 KRVILTICIVVVMIASPFLWSTEKKDIVIAGKLGSEPEILIQMYKQLIEQDTDLHVQLKP 268
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAE---NLQGAKYMLAV 116
F +LK+ +D++ + +L F+ + + V E KY + +
Sbjct: 269 GLGKTAFVFEALKSGEVDVYPEFSGTALSTFVKEEPKSTNRDEVYEQARVGLEKKYNMIM 328
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGI------EPGNEGNQRILDMINNNKFSLKGFR 170
+ K + E D + K K +
Sbjct: 329 LMPMEYNNTYALAMPKKIADQKNINTISDLGNVAQEAKVGFTLEFADREDGYKGMQKLYN 388
Query: 171 LIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV 229
++ ++ ++ V ++ + L + + +
Sbjct: 389 YKFSNVKTMEPKLRYSAIQSGDVNVIDAYSTDSELEQYGLKVLKDDKGLF--PPYQGAPL 446
Query: 230 VRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML-RTH 280
+R + L K P + ++L + K + +M + N + + V + L + +
Sbjct: 447 LRKETLQKYPELEKVLNKLSGKITDEEMRKMNYEVNVNGKSSEEVAKQFLQKEN 500
>gi|30020367|ref|NP_831998.1| glycine betaine transport system permease protein / glycine
betaine-binding protein [Bacillus cereus ATCC 14579]
gi|218232608|ref|YP_002366980.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Bacillus cereus B4264]
gi|228952621|ref|ZP_04114697.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus
thuringiensis serovar kurstaki str. T03a001]
gi|228958548|ref|ZP_04120268.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus
thuringiensis serovar pakistani str. T13001]
gi|229044025|ref|ZP_04191714.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus
AH676]
gi|229079450|ref|ZP_04211990.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus
Rock4-2]
gi|229109720|ref|ZP_04239306.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus
Rock1-15]
gi|229127677|ref|ZP_04256666.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus
BDRD-Cer4]
gi|229144873|ref|ZP_04273270.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus
BDRD-ST24]
gi|229150503|ref|ZP_04278719.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus
m1550]
gi|29895918|gb|AAP09199.1| Glycine betaine transport system permease protein / Glycine
betaine-binding protein [Bacillus cereus ATCC 14579]
gi|218160565|gb|ACK60557.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Bacillus cereus B4264]
gi|228632996|gb|EEK89609.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus
m1550]
gi|228638595|gb|EEK95028.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus
BDRD-ST24]
gi|228655754|gb|EEL11603.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus
BDRD-Cer4]
gi|228673761|gb|EEL29019.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus
Rock1-15]
gi|228703820|gb|EEL56266.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus
Rock4-2]
gi|228725306|gb|EEL76574.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus
AH676]
gi|228801175|gb|EEM48072.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus
thuringiensis serovar pakistani str. T13001]
gi|228807087|gb|EEM53630.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus
thuringiensis serovar kurstaki str. T03a001]
Length = 503
Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats.
Identities = 33/300 (11%), Positives = 87/300 (29%), Gaps = 32/300 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+++ + S + + A ++ M ++E+ +K
Sbjct: 209 KRVILTICIVCIMIASPFLWSTEKKDIVIAGKLGSEPEILIQMYKQLIEQDTDLHVQLKP 268
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL-----------------EEGSIKL 102
F +LK+ +DI+ + +L F+ ++ ++ +
Sbjct: 269 GLGKTAFVFEALKSGEVDIYPEFSGTALSTFVKEEPKSTNRDEVYEQARIGMEKKYNMIM 328
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
+ Y LA+ K+ I+ G D +
Sbjct: 329 LKPMEYNNTYALAMPKKIADQ--KNINTISDLGNVAQEAKVG------FTLEFADREDGY 380
Query: 163 KFSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
K K + ++ ++ + V ++ + L + +
Sbjct: 381 KGMQKLYNYKFSNVKTMEPKLRYSAIESGDVNVIDAYSTDSELEQYGLKVLKDDKGLF-- 438
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++R + L K P + ++L + K + +M + N + + V + L+
Sbjct: 439 PPYQGAPLLRKETLQKYPELEKVLNKLSGKITDEEMRKMNYEVNVNGKSSEEVAKQFLQK 498
>gi|310779516|ref|YP_003967849.1| Substrate-binding region of ABC-type glycine betaine transport
system [Ilyobacter polytropus DSM 2926]
gi|309748839|gb|ADO83501.1| Substrate-binding region of ABC-type glycine betaine transport
system [Ilyobacter polytropus DSM 2926]
Length = 297
Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats.
Identities = 31/301 (10%), Positives = 82/301 (27%), Gaps = 31/301 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCT--PVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K++ L + + A + +T+ + +V++E+ GY T+
Sbjct: 1 MIKLVRTILLMAAIVVFAACGKKEAEVETIVIGHKNYTEARVLGQLFAVMIEDNTGYNTD 60
Query: 59 IKL-LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEE----------------GSIK 101
++ + + +LK I ++ Y + + ++
Sbjct: 61 VRELGGTQIAYEALKTGDISLYPEYSGTVYGALLGESGMKDPDEVYNHVKEKLKENDNLD 120
Query: 102 LVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGI-EPGNEGNQRILDMIN 160
+ Y LAV + + + + G + G E +L +
Sbjct: 121 FLNPLGYNNTYTLAVRPETAEKY--NLKTFSDIAENAGDLVIGATMEFLEREDGMLGLKK 178
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISG 220
+ ++ V ++ N+ L +
Sbjct: 179 TYPGMEFKDE-----KGLDGGLRYTAIKDGKTDVADAFSTDGKLITYNLVILEDDKNFF- 232
Query: 221 FGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
V ++ ++ P + L+ + + S ++ + V L+
Sbjct: 233 -PPYYVAPLLNGEFAASHPEVVAALEKLAGQISEDEMQQLNYRADEEGLPARVVAEEFLK 291
Query: 279 T 279
Sbjct: 292 E 292
>gi|302387520|ref|YP_003823342.1| Substrate-binding region of ABC-type glycine betaine transport
system [Clostridium saccharolyticum WM1]
gi|302198148|gb|ADL05719.1| Substrate-binding region of ABC-type glycine betaine transport
system [Clostridium saccharolyticum WM1]
Length = 521
Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats.
Identities = 38/294 (12%), Positives = 86/294 (29%), Gaps = 18/294 (6%)
Query: 2 YKILAVC---LFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT- 57
+LA L + S + + + +T+ M + ++E+
Sbjct: 225 KAVLAAASGLLAVVFLFTSVGTVSGNTRTISVGSKDFTEQEILGNMVADLIEDRTDIAVS 284
Query: 58 -NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM--L 114
+ L V F ++K ID++M Y S + ++ + K L
Sbjct: 285 RKLSLGGSQVCFSAIKTGDIDLYMDYSGTSYSDILKHPPISDMEQVYQTVKKEYKEQLHL 344
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQ------RILDMINNNKFSLKG 168
V + + + G G + + K
Sbjct: 345 EVLKQMSFNNTYTLAVTQEMAESHHLNKISDLAGIAGTLVSGTTFEFSNRKDGLSGLQKT 404
Query: 169 FRLIEASELASFSQ-IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
+ L + +N V ++ + ++ L +
Sbjct: 405 YGFQMGKSLTLDAAPRYTALKNGEINVIDAFSTDGLLKKFDLKTLEDDKGFF--PPYYAI 462
Query: 228 TVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
VVR + L++CP I+ +++ + + + E+ + +Q V R L+
Sbjct: 463 PVVREEVLEECPEITGIMEELAPVLTNDVMIELNYKVDELQQTPADVARDFLKE 516
>gi|227832442|ref|YP_002834149.1| glycine betaine-binding periplasmic protein [Corynebacterium
aurimucosum ATCC 700975]
gi|262183695|ref|ZP_06043116.1| glycine betaine-binding periplasmic protein [Corynebacterium
aurimucosum ATCC 700975]
gi|227453458|gb|ACP32211.1| glycine betaine-binding periplasmic protein [Corynebacterium
aurimucosum ATCC 700975]
Length = 292
Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats.
Identities = 57/273 (20%), Positives = 99/273 (36%), Gaps = 9/273 (3%)
Query: 14 FSISYARDADSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNIKLLAVPVT-FRSL 71
++ A + WTD + + E GY ++ L+ + +L
Sbjct: 17 CGLASCSSAGEDKTLTLGYMPAWTDTVSGANLLKEQFTEA-GYDVELEELSDAAVFYTAL 75
Query: 72 KNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDI 131
N IDIF W K E +++ + A+ AV + S D+
Sbjct: 76 DNGDIDIFPLAWSERTHKKYMDQYGE-NLEDLGIGYDKAESFFAVPTYMDD--VNSISDL 132
Query: 132 AKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI 191
G KI GIEPG + + ++ +G+ L +S A +++ N
Sbjct: 133 KGQADRFGGKIVGIEPGAGLTELSSNTVDAYGLEDEGYTLATSSTPAMLAELENAIDNQE 192
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFS 251
V W P NS +I L E G E +++ + R + ++ P++ L N+
Sbjct: 193 DIVVTLWSPFWANSQYDIKRLEDPEGSMGEPE-NMHWLARDGFSEQFPDVVDYLGNLTLD 251
Query: 252 VALENEMMKLILNNKQDRQF--VGRTMLRTHPD 282
+ LI+N +D + L TH D
Sbjct: 252 QEQYESLENLIVNEYEDGDEDKAVQEWLGTHGD 284
>gi|228920992|ref|ZP_04084329.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus
thuringiensis serovar huazhongensis BGSC 4BD1]
gi|228838686|gb|EEM83990.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus
thuringiensis serovar huazhongensis BGSC 4BD1]
Length = 503
Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats.
Identities = 33/302 (10%), Positives = 89/302 (29%), Gaps = 33/302 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+++ + + S + + A ++ M ++E+ +K
Sbjct: 209 KRVILMICIVCIMIASPFLWSTEKKDIVIAGKLGSEPEILIQMYKQLIEQDTDLHVQLKP 268
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL-----------------EEGSIKL 102
F +LK+ +DI+ + +L F+ ++ ++ +
Sbjct: 269 GLGKTAFVFEALKSGEVDIYPEFSGTALSTFVKEEPKSTNRDEVYEQARVGMEKKYNMIM 328
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
+ Y LA+ K+ I+ G D +
Sbjct: 329 LKPMEYNNTYALAMPKKIADQ--KNINTISDLGNVAQEAKVG------FTLEFADREDGY 380
Query: 163 KFSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
K K + ++ ++ + V ++ + L + +
Sbjct: 381 KGMQKLYNYKFSNVKTMEPKLRYSAIESGDVNVIDAYSTDSELEQYGLKVLKDDKGLF-- 438
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML-R 278
++R + L K P + ++L + K + +M + N + + V + L +
Sbjct: 439 PPYQGAPLLRKETLQKYPELEKVLNKLSGKITDEEMRKMNYEVNVNGKSSEEVAKQFLQK 498
Query: 279 TH 280
+
Sbjct: 499 EN 500
>gi|229190362|ref|ZP_04317363.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus ATCC
10876]
gi|228593146|gb|EEK50964.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus ATCC
10876]
Length = 503
Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats.
Identities = 33/302 (10%), Positives = 88/302 (29%), Gaps = 33/302 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+++ + S + + A ++ M ++E+ +K
Sbjct: 209 KRVILTICIVCIMIASPLLWSTEKKDIVIAGKLGSEPEILIQMYKQLIEQDTDLHVQLKP 268
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL-----------------EEGSIKL 102
F +LK+ +DI+ + +L F+ ++ ++ +
Sbjct: 269 GLGKTAFVFEALKSGEVDIYPEFSGTALSTFVKEEPKSTNRDEVYEQARVGMEKKYNMIM 328
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
+ Y LA+ K+ I+ G D +
Sbjct: 329 LKPMEYNNTYALAMPKKIADQ--KNINTISDLGNVAQEAKVG------FTLEFADREDGY 380
Query: 163 KFSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
K K + ++ ++ + V ++ + L + +
Sbjct: 381 KGMQKLYNYKFSNVKTMEPKLRYSAIESGDVNVIDAYSTDSELEQYGLKVLKDDKGLF-- 438
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML-R 278
++R + L K P + ++L + K + +M + N + + V + L +
Sbjct: 439 PPYQGAPLLRKETLQKYPELEKVLNKLSGKITDEEMRKMNYEVNVNGKSSEEVAKQFLQK 498
Query: 279 TH 280
+
Sbjct: 499 EN 500
>gi|85704577|ref|ZP_01035679.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Roseovarius sp. 217]
gi|85670985|gb|EAQ25844.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Roseovarius sp. 217]
Length = 307
Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats.
Identities = 37/291 (12%), Positives = 85/291 (29%), Gaps = 25/291 (8%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGY 82
DS P+ W+ + + I E +G + S++ + + M
Sbjct: 18 DSEDPIVIPIHNWSSQIVMSHVVGQIFES-MGNSVEYVSTDSQSVYESVRLGDVALEMEV 76
Query: 83 WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG--FALGIKSYQDIAKYKKELGA 140
W + LE+G + ++ + G+ ++ +
Sbjct: 77 WEGAFGASFRAALEKGGLHDAGDHDAVTREDWWYPMWTKDACPGLPDWEALNACAAAFAT 136
Query: 141 KIYGIEP---GNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLS 197
G G + D + + + S A ++++ ++ P V +
Sbjct: 137 PETGESGRFLGGPVDWLKHDQERVDGLGMNFKVVNAGSAAALWAELGSAEKTKTPIVLFN 196
Query: 198 WEPHPINSDLNIHYLPGG-------------------EEISGFGEASVYTVVRSDYLDKC 238
W P+ + ++ + + DK
Sbjct: 197 WTPNFAEAVWPGEFVEFPEWVEGCDKDPAVGPNPDKTYDCGNPANGYLKKAAWDGMKDKW 256
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
P+ +L I F+ EM KL+ ++ + + L + D+ K W+
Sbjct: 257 PDAYTMLTKISFTNPQIAEMAKLVDIDEMEPEEAAAHWLEDNGDVWKVWIN 307
>gi|332283818|ref|YP_004415729.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Pusillimonas sp. T7-7]
gi|330427771|gb|AEC19105.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Pusillimonas sp. T7-7]
Length = 321
Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats.
Identities = 36/306 (11%), Positives = 90/306 (29%), Gaps = 25/306 (8%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP 65
+ + +A +S P++ D W+ + +LE +GY+T I
Sbjct: 11 ILLAAGLISAPVFAATPESSDPIKIVDNNWSSQKVLARVAQQLLE-KIGYETKIVPSDSQ 69
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA--L 123
F ++ + + M W ++ ++ G + + + + +
Sbjct: 70 GQFAAMGLGDLHLQMEIWEGTMHDSFMKEVKAGRMVDLGSHTATTREDWWYPEYMEEICP 129
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGN---EGNQRILDMINNNKFSLKGFRLIEASELASF 180
G+ +Q + + A + + D L + S A F
Sbjct: 130 GLPDWQALNACADKFAAPETAPKGRYLAGPVDWIKHDKEKIEALDLNFTVVNAGSAAALF 189
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG-------------------EEISGF 221
+++ P V +W P+ + + ++ +
Sbjct: 190 GELKSAAARKEPIVLFNWSPNWVGAAFPGKFVEFPEHEPACTEDPKWGVNPDKTYDCGSP 249
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHP 281
+ S + K +L+KNI F+ + ++ L + + +
Sbjct: 250 KGGYLKKGAWSGFEKKWSCGYQLIKNIDFTGPMIDQAAALADVDGLAHDDAATAWIEKNQ 309
Query: 282 DLLKNW 287
+ + W
Sbjct: 310 EQVAAW 315
>gi|227502677|ref|ZP_03932726.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, periplasmic component [Corynebacterium
accolens ATCC 49725]
gi|227076407|gb|EEI14370.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, periplasmic component [Corynebacterium
accolens ATCC 49725]
Length = 300
Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats.
Identities = 53/266 (19%), Positives = 96/266 (36%), Gaps = 11/266 (4%)
Query: 25 CTPVRFAD-TGWTDIAATTAMTSVILEEILGYKTNIKLL-AVPVTFRSLKNKGIDIFMGY 82
+ WTD +T + LE GY + L V + L N IDI+
Sbjct: 38 KGTITLGYLPSWTDGLSTAYLLENKLEAA-GYDVEHEELTDAAVLYAGLANGDIDIYPSA 96
Query: 83 WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKI 142
W + + I+ + A AV + I S +D+ + +
Sbjct: 97 WSEKTHEQYMDKYSD-DIEDLGSYYDNAVLTWAVPEYMED--INSIEDLKGKSADFNDTV 153
Query: 143 YGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP 202
GIEPG + I + G+ L +S A S+++ N V W P
Sbjct: 154 VGIEPGAGLTEASKKAIEDYGLDEDGYNLSTSSTPAMLSELQTAVDNEDDIVVTLWRPFW 213
Query: 203 INSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI 262
N+ + L + G E+ ++ + R + D+ P +S L ++K + +
Sbjct: 214 ANAKFPVKDLEDPKGSLGDPES-LHWLARDGFSDEFPEVSEWLGDLKLDDEQYGSLEDNV 272
Query: 263 LN---NKQDRQFVGRTMLRTHPDLLK 285
+N ++ + L +PD++K
Sbjct: 273 VNQFEEGKEP-DAVQDWLDKNPDVVK 297
>gi|301053817|ref|YP_003792028.1| glycine betaine/choline ABC transporter ATP-binding protein
[Bacillus anthracis CI]
gi|300375986|gb|ADK04890.1| glycine betaine/choline ABC transporter, ATP-binding protein
[Bacillus cereus biovar anthracis str. CI]
Length = 503
Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats.
Identities = 30/301 (9%), Positives = 85/301 (28%), Gaps = 31/301 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+++ + S + A ++ M ++E+ +K
Sbjct: 209 KRVILTICIVCIMVASPFLWNTEKKDIVIAGKLGSEPEILIQMYKQLIEQDTDLHVQLKP 268
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL-----------------EEGSIKL 102
F +LK+ +DI+ + +L F+ ++ + +
Sbjct: 269 GLGKTAFVFEALKSGEVDIYPEFSGTALSTFVKEEPKSTNRDEVYEQARVGMEKKYKMVM 328
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
+ Y LA+ + + + +E + M
Sbjct: 329 LKPMEYNNTYALAMPKKIADQNNINTISDLGNIAQDTKVGFTLE-FADREDGYKGMQKLY 387
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
+ + +E ++ V ++ + L + +
Sbjct: 388 NYKFSNVKTMEPKLR------YSAIQSGDVNVIDAYSTDSELEQYGLKVLKDDKGLF--P 439
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML-RT 279
++R + L K P + ++L + K + +M + N ++ + V + L +
Sbjct: 440 PYQGAPLLRKETLQKYPELEKVLNKLSGKITDEEMRKMNYEVNVNGKNSEEVAKQFLQKE 499
Query: 280 H 280
+
Sbjct: 500 N 500
>gi|47565638|ref|ZP_00236678.1| MW0685 [Bacillus cereus G9241]
gi|47557274|gb|EAL15602.1| MW0685 [Bacillus cereus G9241]
Length = 503
Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats.
Identities = 32/302 (10%), Positives = 85/302 (28%), Gaps = 33/302 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+++ + S + A ++ M ++E+ +K
Sbjct: 209 KRVILTICIVCIMVASPFLWNTEKKDIVIAGKLGSEPEILIQMYKQLIEQDTDLHVQLKP 268
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL-----------------EEGSIKL 102
F +LK+ +DI+ + +L F+ ++ S+ +
Sbjct: 269 GLGKTAFVFEALKSGEVDIYPEFSGTALSTFVKEEPKSTNRDEVYEQARVGMEKKYSMVM 328
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
+ Y LA+ S + D +
Sbjct: 329 LKPMEYNNTYALAMPKKIADQNNVSTI--------SDLGKIAQDAKVGFTLEFADREDGY 380
Query: 163 KFSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
K K + ++ ++ ++ V ++ + L + +
Sbjct: 381 KGMQKLYNYKFSNVKTMEPKLRYSAIQSGDVNVIDAYSTDSELEQYGLKVLKDDKGLF-- 438
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML-R 278
++R + L K P + ++L + K + +M + N + + V + L +
Sbjct: 439 PPYQGAPLLRKETLQKYPELEKVLNKLSGKITDEEMRKMNYEVNVNGKSSEEVAKQFLQK 498
Query: 279 TH 280
+
Sbjct: 499 EN 500
>gi|229178648|ref|ZP_04306012.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus
172560W]
gi|228604806|gb|EEK62263.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus
172560W]
Length = 503
Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats.
Identities = 33/302 (10%), Positives = 88/302 (29%), Gaps = 33/302 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+++ + S + + A ++ M ++E+ +K
Sbjct: 209 KRVILTICIVCIMIASPLLWSTEKKDIVIAGKLGSEPEILIQMYKQLIEQDTDLHVQLKP 268
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL-----------------EEGSIKL 102
F +LK+ +DI+ + +L F+ ++ ++ +
Sbjct: 269 GLGKTAFVFEALKSGEVDIYPEFSGTALSTFVKEEPKSTNRDEVYEQARVGMEKKYNMIM 328
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
+ Y LA+ K+ I+ G D +
Sbjct: 329 LKPMEYNNTYALAMPKKIADQ--KNINTISDLGNVAKEAKVG------FTLEFADREDGY 380
Query: 163 KFSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
K K + ++ ++ + V ++ + L + +
Sbjct: 381 KGMQKLYNYKFSNVKTMEPKLRYSAIESGDVNVIDAYSTDSELEQYGLKVLKDDKGLF-- 438
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML-R 278
++R + L K P + ++L + K + +M + N + + V + L +
Sbjct: 439 PPYQGAPLLRKETLQKYPELEKVLNKLSGKITDEEMRKMNYEVNVNGKSSEEVAKQFLQK 498
Query: 279 TH 280
+
Sbjct: 499 EN 500
>gi|228900870|ref|ZP_04065085.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus
thuringiensis IBL 4222]
gi|228858796|gb|EEN03241.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus
thuringiensis IBL 4222]
Length = 503
Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats.
Identities = 32/294 (10%), Positives = 86/294 (29%), Gaps = 17/294 (5%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+++ + S + + A ++ M ++E+ +K
Sbjct: 209 KRVILTICIVVVMIASPFLWSTEKKDIVIAGKLGSEPEILIQMYKQLIEQDTDLHVQLKP 268
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAE---NLQGAKYMLAV 116
F +LK+ +D++ + +L F+ + + V E KY + +
Sbjct: 269 GLGKTAFVFEALKSGEVDVYPEFSGTALSTFVKEEPKSTNRDEVYEQARVGLEKKYNMIM 328
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGI------EPGNEGNQRILDMINNNKFSLKGFR 170
+ K + E D + K K +
Sbjct: 329 LMPMEYNNTYALAMPKKIADQKNINTISDLGNVAQEAKVGFTLEFADREDGYKGMQKLYN 388
Query: 171 LIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV 229
++ ++ ++ V ++ + L + + +
Sbjct: 389 YKFSNVKTMEPKLRYSAIQSGDVNVIDAYSTDSELEQYGLKVLKDDKGLF--PPYQGAPL 446
Query: 230 VRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML-RTH 280
+R + L K P + ++L + K + +M + N + + V + L + +
Sbjct: 447 LRKETLQKYPELEKVLNKLSGKITDEEMRKMNYEVNVNGKSSEEVAKQFLQKEN 500
>gi|254512919|ref|ZP_05124985.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Rhodobacteraceae bacterium
KLH11]
gi|221532918|gb|EEE35913.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Rhodobacteraceae bacterium
KLH11]
Length = 316
Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats.
Identities = 41/319 (12%), Positives = 92/319 (28%), Gaps = 37/319 (11%)
Query: 1 MY--KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K L + +F V W + T + V LE+ LG
Sbjct: 1 MKVWKTLTATVLAASFGTVALAQ-----DVIIGVPNWASVRGTAHILKVALEDNLGLTVE 55
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
++ P+ F ++ + + + W P+ + ++ E N + + V
Sbjct: 56 LQNGTNPIIFEAMDSGAMHVHPEVWLPNQQNLHDTFVTEKGSVAFNPNAVLSDQQICVTK 115
Query: 119 VGFALGIKSYQ---DIAKYKKELGAKIYGIEPGN----EGNQRILDMINNNKFS-LKGFR 170
S G ++ I + +
Sbjct: 116 DTQERTGISSVSDLTDPDMAANFDTDGDGRGEMWIGGAGWASTNVEKIRAKSYGYAETMN 175
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI------------ 218
L+E E + +Q+ VF + PH + S ++ L
Sbjct: 176 LMEMDEALALAQVDNAVAQGQNIVFYCYTPHHMFSLYDLVPLSEPAYDAAEWDVKQPTDD 235
Query: 219 ----------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQD 268
+ + A ++ + + P + +L ++ + N ++ + + +D
Sbjct: 236 PNWLENSKAGTAWDAAKLHVFYAAALEEAQPEAAAMLSQVELTTEQVNAIVYALSVDGKD 295
Query: 269 RQFVGRTMLRTHPDLLKNW 287
R + + DL+ +W
Sbjct: 296 PAEFAREWVDENADLVDSW 314
>gi|324326312|gb|ADY21572.1| glycine betaine/choline ABC transporter, ATP-binding protein
[Bacillus thuringiensis serovar finitimus YBT-020]
Length = 503
Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats.
Identities = 31/302 (10%), Positives = 85/302 (28%), Gaps = 33/302 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+++ + S + A ++ M ++E+ +K
Sbjct: 209 KRVILTICIVCIMVASPFLWNTEKKDIVIAGKLGSEPEILIQMYKQLIEQDTDLHVQLKP 268
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL-----------------EEGSIKL 102
F +LK+ +DI+ + +L F+ ++ S+ +
Sbjct: 269 GLGKTAFVFEALKSGEVDIYPEFSGTALSTFVKEEPKSTNRDEVYEQARVGMEKKYSMVM 328
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
+ Y LA+ + + D +
Sbjct: 329 LKPMEYNNTYALAMPKKIADQNNINTI--------SDLGKIAQDAKVGFTLEFADREDGY 380
Query: 163 KFSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
K K + ++ ++ ++ V ++ + L + +
Sbjct: 381 KGMQKIYNYKFSNVKTMEPKLRYSAIQSGDVNVIDAYSTDSELEQYGLKVLKDDKGLF-- 438
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML-R 278
++R + L K P + ++L + K + +M + N + + V + L +
Sbjct: 439 PPYQGAPLLRKETLQKYPELEKVLNKLSGKITDEEMRKMNYEVNVNGKSSEEVAKRFLQK 498
Query: 279 TH 280
+
Sbjct: 499 EN 500
>gi|319942970|ref|ZP_08017253.1| amino acid ABC superfamily ATP binding cassette transporter,
binding protein [Lautropia mirabilis ATCC 51599]
gi|319743512|gb|EFV95916.1| amino acid ABC superfamily ATP binding cassette transporter,
binding protein [Lautropia mirabilis ATCC 51599]
Length = 647
Score = 146 bits (367), Expect = 5e-33, Method: Composition-based stats.
Identities = 48/313 (15%), Positives = 100/313 (31%), Gaps = 33/313 (10%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFM 80
D + P+R W TTA+ ++L E LG +T + +VP +L I I
Sbjct: 34 DCAAQDPIRLGGLDWESGQITTALLDLLLREGLGCRTEVVPGSVPSLESALIQDDIQIIA 93
Query: 81 GYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIK---------SYQDI 131
W ++ L GA V
Sbjct: 94 EQWVGRSPGIEKAVADKKVAILGDTLTGGAVQGWYVPRYVQEQHPDLKSVDDLASHAHLF 153
Query: 132 AKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI 191
++ A+ G ++ N S + + + A ++I
Sbjct: 154 PNPEQPGQARFLNCPAGWACETFNTRLLANTGLSTRYANVHPGTGAALDAEIASAIARRE 213
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEE-----------------ISGFGEASVYTVVRSDY 234
P +F W P + + ++ + + +SGF + + V
Sbjct: 214 PLLFYYWHPAGLMAKYDLVPIAFPDYDARCWPELMNPASRDRCVSGFPVSRLAMAVSDSL 273
Query: 235 LDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTF 294
+ P + L++ ++ S + + ++ + N++D R L+ P+L WL
Sbjct: 274 QKQYPQVIALIRKLQLSPEVLDRLILDMTENRRDGPAQARLFLQQRPELWAPWLP----- 328
Query: 295 DGQDPSRQLERFM 307
+ ++++ R +
Sbjct: 329 --AEAAQRVARRL 339
>gi|119387472|ref|YP_918506.1| substrate-binding region of ABC-type glycine betaine transport
system [Paracoccus denitrificans PD1222]
gi|119378047|gb|ABL72810.1| Substrate-binding region of ABC-type glycine betaine transport
system [Paracoccus denitrificans PD1222]
Length = 283
Score = 146 bits (367), Expect = 5e-33, Method: Composition-based stats.
Identities = 41/288 (14%), Positives = 96/288 (33%), Gaps = 12/288 (4%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M + L + ++ W D+ + +T +LE+ G+ +
Sbjct: 1 MRRFFKAILAGAVVLGLASPVMAQDKVIKMGTMAWEDLTPISGITKKVLEDK-GFTVELT 59
Query: 61 LLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ + + +L + I + + ++ ++ G LAV
Sbjct: 60 EFSEWGIAYAALAKGDVQILTSQVDYVAHDYWKRNMN--RLEKISPVSHGLYQGLAVPKY 117
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
I S +++ + G +I GIEPG + D ++ L +L+E S
Sbjct: 118 V---TIDSVEELNDNADKFGGRIIGIEPGAGLMRETADAVSAYDLKL---QLVEGSTAGM 171
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+ ++ WEP + + +L + I + Y + + + + P
Sbjct: 172 TAALKSAVDRQEWIAVTLWEPTWMALKFDTKFLADPKGIFA-PPQTYYWIAQKGFAEANP 230
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
+L ++ + ++ + N+ Q + H + L+ W
Sbjct: 231 EAREVLASVYVPIEEVAQINAAV-NDGQSMNEAIGGWISEHGNRLERW 277
>gi|302553674|ref|ZP_07306016.1| glycine betaine-binding lipoprotein [Streptomyces viridochromogenes
DSM 40736]
gi|302471292|gb|EFL34385.1| glycine betaine-binding lipoprotein [Streptomyces viridochromogenes
DSM 40736]
Length = 321
Score = 146 bits (367), Expect = 5e-33, Method: Composition-based stats.
Identities = 44/318 (13%), Positives = 96/318 (30%), Gaps = 31/318 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDAD------------SCTPVRFADTGWTDIAATTAMTSVI 48
+ K + + ++ AD V + W + A+ I
Sbjct: 6 IRKTAVIAAASSLALLTGCGAADMTKQASPFANAQGSKTVTLSVQSWVGAQSNVAVAQYI 65
Query: 49 LEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQ 108
LE LGY+ + + + +L +D + W Y+++ L
Sbjct: 66 LEHELGYRVDTVQVDEVPAWDALSQGRVDALLEDWG--HPDQEKRYVDDKKTITRGGGLG 123
Query: 109 GAKY-MLAVNDVGFA--LGIKSYQDIAKYKKELGAKIYGIEPG---NEGNQRILDMINNN 162
+ V I +++++ KY G + + D
Sbjct: 124 VTGHIGWFVPTYLAKQHPDITNWKNLNKYSDLFRTPESGSKGQLMDGSPSYVTNDKALVK 183
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE----- 217
L + SE A +Q+R+ + P + + P + + + +
Sbjct: 184 NLKLDYQVVFAGSEAAQITQMRQFAKEKKPFLTYWYSPQWLFKKVPMTEVKLPPYKEGCD 243
Query: 218 ------ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQF 271
+ + + SD+ + LK K++ +NE+ +I + K +
Sbjct: 244 ADPDKVACAYPHTPLEKYLNSDFAKNGGKAAAFLKKFKWTTEEQNEVSLMIADKKMTPED 303
Query: 272 VGRTMLRTHPDLLKNWLI 289
+ + +H K WL
Sbjct: 304 AAKKWVDSHKSTWKKWLS 321
>gi|291287939|ref|YP_003504755.1| Substrate-binding region of ABC-type glycine betaine transport
system [Denitrovibrio acetiphilus DSM 12809]
gi|290885099|gb|ADD68799.1| Substrate-binding region of ABC-type glycine betaine transport
system [Denitrovibrio acetiphilus DSM 12809]
Length = 342
Score = 146 bits (367), Expect = 5e-33, Method: Composition-based stats.
Identities = 49/337 (14%), Positives = 94/337 (27%), Gaps = 45/337 (13%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NI 59
M +A + + VR A W A+ S L+E LGYK
Sbjct: 6 MMLAVAFAAISVFTAFADNMKPGKGVTVRPARATWDTGYFQEAIVSAGLKE-LGYKVKKP 64
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
K L P+ ++S+ +D + W+P + E+ + ++ G ++
Sbjct: 65 KELTNPLFYQSVVLGDLDYWTNGWFPMHNDQLPKNFEKKAERIGYVAKAGGLQGYLISKD 124
Query: 120 GFALGI---------KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
+ + A + PG + I ++
Sbjct: 125 YAEKYNIKSLDDFRRDDVRKAFDSDGDGKADLIACPPGWGCEKIISHQMDAYGLKD-YIN 183
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE------------- 217
I+AS AS ++ +N P F +W P+ L
Sbjct: 184 PIKASYSASMAEGIAKFKNGEPVFFYTWAPNWTIFKLKPGEDVVWINVPEINPTEAQKGY 243
Query: 218 -----------------ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMK 260
GF + V +L + P + L+ + N
Sbjct: 244 VDRMTGTGIKGAVSDPIKLGFVVTDIRVVANKKFLKENPAAATFLREFHLDLEDINAQNA 303
Query: 261 LILNNKQDRQFVGR---TMLRTHPDLLKNWLIGVTTF 294
+ ++ + + + + HP+ WL
Sbjct: 304 RMNEGEKSAKDIAKHAQEWIAKHPEKWNKWLSDARAA 340
>gi|239825867|ref|YP_002948491.1| substrate-binding region of ABC-type glycine betaine transporter
[Geobacillus sp. WCH70]
gi|239806160|gb|ACS23225.1| Substrate-binding region of ABC-type glycine betaine transport
system [Geobacillus sp. WCH70]
Length = 300
Score = 146 bits (367), Expect = 5e-33, Method: Composition-based stats.
Identities = 43/305 (14%), Positives = 95/305 (31%), Gaps = 36/305 (11%)
Query: 1 MYK---ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M K + + L T + A + + A +T+ + + L+
Sbjct: 1 MRKWMFLFLSAVMLFTLTACGAGEKAEKGKIVVASKKFTEQVILAHLLAEYLKANTDLDV 60
Query: 58 NIK--LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFI------------------APYLEE 97
+K L V ++++ +D+++ Y + Y E+
Sbjct: 61 EMKDSLGGAFVLQQAMEKGDVDLYVEYTGTGHLNILKNKYDPSKTPEEIYEETKKQYKEK 120
Query: 98 GSIKLVAENLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
+I + Y LA+ G+K+Y D+AK +L E +
Sbjct: 121 FNIAWLKPLGFNNTYALAMRKELADKLGVKTYSDLAKKSDQLV--FGTDAEFFERSDGYD 178
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+++ F K I+ +N V ++ N+ L
Sbjct: 179 GLVDAYGFKFKKTANIDPDLQ------YEAAKNGDIDVITAYTTDARIKKYNLVVLKD-- 230
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGR 274
+ F ++R + LD P + ++L ++ + E+ + + + V
Sbjct: 231 DKHYFPPYHAVPIIRQEVLDANPGLGKVLNKLEGILTDEKMMELNAQVNMEGKRPKQVAI 290
Query: 275 TMLRT 279
L+
Sbjct: 291 DFLKA 295
>gi|163731451|ref|ZP_02138898.1| glycine betaine transporter, substrate-binding protein [Roseobacter
litoralis Och 149]
gi|161394905|gb|EDQ19227.1| glycine betaine transporter, substrate-binding protein [Roseobacter
litoralis Och 149]
Length = 322
Score = 146 bits (367), Expect = 5e-33, Method: Composition-based stats.
Identities = 46/329 (13%), Positives = 93/329 (28%), Gaps = 30/329 (9%)
Query: 1 MY-KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M K L L+ + A AD C V + W + T++ S ++ + +
Sbjct: 1 MKFKTFTAGLCLSAGMTAGAAYAD-CGAVSITEMDWASASVVTSVASFLMTQGYSCDVTV 59
Query: 60 KLLAVPVTFRSLKN-KGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
S+ DI W E + E +++ G +
Sbjct: 60 VPTTTVPAMTSVAETGQPDILTELWTSYTEVYEELVAEGKLVEVSKVLSDGGVEAWWIPQ 119
Query: 119 VGFA--LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR-LIEAS 175
+K+ I +G + G + + + + G S
Sbjct: 120 YLADAHPELKTLDGIKANPDLVGGLFHDCPSGWGCDITNNNNFKASGLADAGVERFQHGS 179
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG-----------------EEI 218
+ I P W P + + + +
Sbjct: 180 GETLATAIAAAYEAGEPWFGYYWAPTSVLGKYPMVQVEMPAYDEATHTCNGLEDCATPGL 239
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLR 278
S + ++V T V + + ++ P+++ +L + F+ A E++ N + L
Sbjct: 240 SAYPTSNVVTAVTTTFSEREPDVAEMLSKMSFTNAQMGEVLAWQETNNASNEEAAVYFLT 299
Query: 279 THPDLLKNWLIGVTTFDGQDPSRQLERFM 307
T+ D WL D L +
Sbjct: 300 TYKDTWAAWLN-------DDAKANLSAIL 321
>gi|206974073|ref|ZP_03234991.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Bacillus cereus H3081.97]
gi|206748229|gb|EDZ59618.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Bacillus cereus H3081.97]
Length = 503
Score = 146 bits (367), Expect = 5e-33, Method: Composition-based stats.
Identities = 34/302 (11%), Positives = 91/302 (30%), Gaps = 34/302 (11%)
Query: 3 KILAVCLFLTTFSISYAR-DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
K++ + + + ++ + A ++ M ++E+ +K
Sbjct: 209 KLVILTICIVCIMVASPFLWNTEKKDIVIAGKLGSEPEILIQMYKQLIEQDTDLHVQLKP 268
Query: 62 L--AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE-----------------EGSIKL 102
F +LK+ +DI+ + +L F+ + + S+ +
Sbjct: 269 GLGKTSFVFEALKSGEVDIYPEFSGTALSTFVKEEPKSTNRNEVYEQARVGMEKKYSMVM 328
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
+ Y LA+ K+ I+ G D +
Sbjct: 329 LKPMEYNNTYALAMPKKIADQ--KNISTISDLGNIAQDAKVG------FTLEFADREDGY 380
Query: 163 KFSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
K K + ++ ++ ++ V ++ + L + +
Sbjct: 381 KGMQKIYNYKFSNVKTMEPKLRYSAIQSGDVNVIDAYSTDSELEQYGLKVLKDDKGLF-- 438
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML-R 278
++R + L K P + ++L + K + +M + N + + V + L +
Sbjct: 439 PPYQGAPLLRKETLQKYPELEKVLNKLSGKITDEEMRKMNYEVNVNGKSSEEVAKQFLQK 498
Query: 279 TH 280
+
Sbjct: 499 EN 500
>gi|52143178|ref|YP_083652.1| glycine betaine/choline ABC transporter, ATP-binding protein
[Bacillus cereus E33L]
gi|51976647|gb|AAU18197.1| glycine betaine/choline ABC transporter, ATP-binding protein
[Bacillus cereus E33L]
Length = 503
Score = 146 bits (367), Expect = 6e-33, Method: Composition-based stats.
Identities = 30/301 (9%), Positives = 86/301 (28%), Gaps = 31/301 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+++ + S + A ++ M ++E+ +K
Sbjct: 209 KRVILTICIVCIMVASPFLWNTEKKDIVIAGKLGSEPEILVQMYKQLIEQDTDLHVQLKP 268
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL-----------------EEGSIKL 102
F +LK+ +DI+ + +L F+ ++ ++ +
Sbjct: 269 GLGKTAFVFEALKSGEVDIYPEFSGTALSTFVKEEPKSTNRDEVYEQARIGMEKKYNMVM 328
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
+ Y LA+ + + + +E + M
Sbjct: 329 LKPMEYNNTYALAMPKKIADQNNINTISDLGNIAQDTKVGFTLE-FADREDGYKGMQKLY 387
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
+ + +E ++ V ++ + L + +
Sbjct: 388 NYKFSNVKTMEPKLR------YSAIQSGDVNVIDAYSTDSELEQYGLKVLKDDKGLF--P 439
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML-RT 279
++R + L K P + ++L + K + +M + N ++ + V + L +
Sbjct: 440 PYQGAPLLRKETLQKYPELEKVLNKLSGKITDEEMRKMNYEVNVNGKNSEEVAKQFLQKE 499
Query: 280 H 280
+
Sbjct: 500 N 500
>gi|118477707|ref|YP_894858.1| glycine betaine/choline ABC transporter ATP-binding protein
[Bacillus thuringiensis str. Al Hakam]
gi|225864258|ref|YP_002749636.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Bacillus cereus 03BB102]
gi|229184508|ref|ZP_04311711.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus BGSC
6E1]
gi|118416932|gb|ABK85351.1| glycine betaine/choline ABC transporter, ATP-binding protein
[Bacillus thuringiensis str. Al Hakam]
gi|225789951|gb|ACO30168.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Bacillus cereus 03BB102]
gi|228598919|gb|EEK56536.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus BGSC
6E1]
Length = 503
Score = 146 bits (367), Expect = 6e-33, Method: Composition-based stats.
Identities = 30/301 (9%), Positives = 86/301 (28%), Gaps = 31/301 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+++ + S + A ++ M ++E+ +K
Sbjct: 209 KRVILTICIVCVMVASPFLWNTEKKDIVIAGKLGSEPEILIQMYKQLIEQDTDLHVQLKP 268
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL-----------------EEGSIKL 102
F +LK+ +DI+ + +L F+ ++ ++ +
Sbjct: 269 GLGKTAFVFEALKSGEVDIYPEFSGTALSTFVKEEPKSTNRDEVYEQARVGMEKKYNMVM 328
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
+ Y LA+ + + + +E + M
Sbjct: 329 LKPMEYNNTYALAMPKKIADQNNINTISDLGNIAQDTKVGFTLE-FADREDGYKGMQKLY 387
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
+ + +E ++ V ++ + L + +
Sbjct: 388 NYKFSNVKTMEPKLR------YSAIQSGDVNVIDAYSTDSELEQYGLKVLKDDKGLF--P 439
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML-RT 279
++R + L K P + ++L + K + +M + N ++ + V + L +
Sbjct: 440 PYQGAPLLRKETLQKYPELEKVLNKLSGKITDEEMRKMNYEVNVNGKNSEEVAKQFLQKE 499
Query: 280 H 280
+
Sbjct: 500 N 500
>gi|229155868|ref|ZP_04283969.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus ATCC
4342]
gi|228627475|gb|EEK84201.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus ATCC
4342]
Length = 503
Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats.
Identities = 32/294 (10%), Positives = 84/294 (28%), Gaps = 17/294 (5%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+++ + S + A ++ M ++E+ +K
Sbjct: 209 RRVILTICIVCIMVASPFLWNTEKKDIVIAGKLGSEPEILIQMYKQLIEQDTDLHVQLKP 268
Query: 62 L--AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAE---NLQGAKYMLAV 116
F +LK+ +DI+ + +L F+ + + V E KY + +
Sbjct: 269 GLGKTSFVFEALKSGEVDIYPEFSGTALSTFVKEEPKSTNRDEVYEQARVGMEKKYSMVM 328
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGI------EPGNEGNQRILDMINNNKFSLKGFR 170
+ K + + D + K K +
Sbjct: 329 LKPMEYNNTYALAMPKKIADQKNISTISDLGNIAQDAKVGFTLEFADREDGYKGMQKLYN 388
Query: 171 LIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV 229
++ ++ + V ++ + L + + +
Sbjct: 389 YKFSNVKTMEPKLRYSAIESGDVNVIDAYSTDSELEQYGLKVLKDDKGLF--PPYQGAPL 446
Query: 230 VRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML-RTH 280
+R + L K P + ++L + K + +M + N + + V + L + +
Sbjct: 447 LRKETLQKYPELEKVLNKLSGKITDEEMRKMNYEVNVNGKSSEEVAKQFLQKEN 500
>gi|229161250|ref|ZP_04289237.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus
R309803]
gi|228622346|gb|EEK79185.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus
R309803]
Length = 503
Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats.
Identities = 29/299 (9%), Positives = 84/299 (28%), Gaps = 30/299 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+++ + S + A ++ M ++E+ +K
Sbjct: 209 KRVILTICIVCIIIASPFLWNTQKKDIVIAGKLGSEPEILIQMYKQLIEQDTDLHVELKP 268
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL-----------------EEGSIKL 102
F +LK+ +DI+ + +L F+ ++ ++ +
Sbjct: 269 GLGKTAFVFEALKSGEVDIYPEFSGTALSTFVKEEPKSTNRDEVYEQARIGMEKKYNMVM 328
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
+ Y LA+ + + + +E + M
Sbjct: 329 LKPMDYNNTYALAMPKKIADQNNINTISDLGNIAQNAKVGFTLE-FADREDGYKGMQKLY 387
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
+ + +E ++ V ++ + L + +
Sbjct: 388 NYKFSNVKTMEPKLR------YSAIQSGDVNVIDAYSTDSELEQYGLKVLKDDKGLF--P 439
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++R + L K P + ++L + K + +M + + + + V + L+
Sbjct: 440 PYQGAPLLREETLQKYPELEQVLNKLAGKITDEEMRKMNYEVNVSGKSSEEVAKQFLQK 498
>gi|218903422|ref|YP_002451256.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Bacillus cereus AH820]
gi|228933588|ref|ZP_04096438.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus
thuringiensis serovar andalousiensis BGSC 4AW1]
gi|218538433|gb|ACK90831.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Bacillus cereus AH820]
gi|228826048|gb|EEM71831.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus
thuringiensis serovar andalousiensis BGSC 4AW1]
Length = 503
Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats.
Identities = 30/301 (9%), Positives = 86/301 (28%), Gaps = 31/301 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+++ + S + A ++ M ++E+ +K
Sbjct: 209 KRVILTICIVCIMVASPFLWNTEKKDIVIAGKLGSEPEILVQMYKQLIEQDTDLHVQLKP 268
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL-----------------EEGSIKL 102
F +LK+ +DI+ + +L F+ ++ ++ +
Sbjct: 269 GLGKTAFVFEALKSGEVDIYPEFSGTALSTFVKEEPKSTNRDEVYEQARVGMEKKYNMVM 328
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
+ Y LA+ + + + +E + M
Sbjct: 329 LKPMEYNNTYALAMPKKIADQNNINTISDLGNIAQDTKVGFTLE-FADREDGYKGMQKLY 387
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
+ + +E ++ V ++ + L + +
Sbjct: 388 NYKFSNVKTMEPKLR------YSAIQSGDVNVIDAYSTDSELEQYGLKVLKDDKGLF--P 439
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML-RT 279
++R + L K P + ++L + K + +M + N ++ + V + L +
Sbjct: 440 PYQGAPLLRKETLQKYPELEKVLNKLSGKITDEEMRKMNYEVNVNGKNSEEVAKQFLQKE 499
Query: 280 H 280
+
Sbjct: 500 N 500
>gi|49477588|ref|YP_036392.1| glycine betaine/choline ABC transporter ATP-binding protein
[Bacillus thuringiensis serovar konkukian str. 97-27]
gi|196033823|ref|ZP_03101234.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Bacillus cereus W]
gi|228927351|ref|ZP_04090408.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus
thuringiensis serovar pondicheriensis BGSC 4BA1]
gi|228945902|ref|ZP_04108245.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus
thuringiensis serovar monterrey BGSC 4AJ1]
gi|229091272|ref|ZP_04222490.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus
Rock3-42]
gi|229121836|ref|ZP_04251056.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus
95/8201]
gi|49329144|gb|AAT59790.1| glycine betaine/choline ABC transporter, ATP-binding protein
[Bacillus thuringiensis serovar konkukian str. 97-27]
gi|195993503|gb|EDX57460.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Bacillus cereus W]
gi|228661625|gb|EEL17245.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus
95/8201]
gi|228692038|gb|EEL45779.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus
Rock3-42]
gi|228813776|gb|EEM60054.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus
thuringiensis serovar monterrey BGSC 4AJ1]
gi|228832247|gb|EEM77827.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus
thuringiensis serovar pondicheriensis BGSC 4BA1]
Length = 503
Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats.
Identities = 30/301 (9%), Positives = 86/301 (28%), Gaps = 31/301 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+++ + S + A ++ M ++E+ +K
Sbjct: 209 KRVILTICIVCIMVASPFLWNTEKKDIVIAGKLGSEPEILIQMYKQLIEQDTDLHVQLKP 268
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL-----------------EEGSIKL 102
F +LK+ +DI+ + +L F+ ++ ++ +
Sbjct: 269 GLGKTAFVFEALKSGEVDIYPEFSGTALSTFVKEEPKSTNRDEVYEQARVGMEKKYNMVM 328
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
+ Y LA+ + + + +E + M
Sbjct: 329 LKPMEYNNTYALAMPKKIADQNNINTISDLGNIAQDTKVGFTLE-FADREDGYKGMQKLY 387
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
+ + +E ++ V ++ + L + +
Sbjct: 388 NYKFSNVKTMEPKLR------YSAIQSGDVNVIDAYSTDSELEQYGLKVLKDDKGLF--P 439
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML-RT 279
++R + L K P + ++L + K + +M + N ++ + V + L +
Sbjct: 440 PYQGAPLLRKETLQKYPELEKVLNKLSGKITDEEMRKMNYEVNVNGKNSEEVAKQFLQKE 499
Query: 280 H 280
+
Sbjct: 500 N 500
>gi|196046908|ref|ZP_03114129.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Bacillus cereus 03BB108]
gi|196022283|gb|EDX60969.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Bacillus cereus 03BB108]
Length = 503
Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats.
Identities = 30/301 (9%), Positives = 86/301 (28%), Gaps = 31/301 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+++ + S + A ++ M ++E+ +K
Sbjct: 209 KRVILTICIVCVMVASPFLWNTEKKDIVIAGKLGSEPEILIQMYKQLIEQDTDLHVQLKP 268
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL-----------------EEGSIKL 102
F +LK+ +DI+ + +L F+ ++ ++ +
Sbjct: 269 GLGKTAFVFEALKSGEVDIYPEFSGTALSTFVKEEPKSTNRDEVYEQARVGMEKKYNMVM 328
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
+ Y LA+ + + + +E + M
Sbjct: 329 LKPMEYNNTYALAMPKKIADQNNINTISDLGNIAQDTKVGFTLE-FADREDGYKGMQKLY 387
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
+ + +E ++ V ++ + L + +
Sbjct: 388 NYKFSNVKTMEPKLR------YSAIQSGDVNVIDAYSTDSELEQYGLKVLKDDKGLF--P 439
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML-RT 279
++R + L K P + ++L + K + +M + N ++ + V + L +
Sbjct: 440 PYQGAPLLRKETLQKYPELEKVLNKLSGKITDEEMRKMNYEVNVNGKNSEEVAKQFLQKE 499
Query: 280 H 280
+
Sbjct: 500 N 500
>gi|163737858|ref|ZP_02145274.1| glycine betaine/L-proline ABC transporter, substrate binding
protein, putative [Phaeobacter gallaeciensis BS107]
gi|161388474|gb|EDQ12827.1| glycine betaine/L-proline ABC transporter, substrate binding
protein, putative [Phaeobacter gallaeciensis BS107]
Length = 321
Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats.
Identities = 50/321 (15%), Positives = 97/321 (30%), Gaps = 35/321 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M L F T SI +A A + V+ WT A + ++E +G K
Sbjct: 1 MKTKLKSLGFAATVSI-FAMPALAGEEVKIGVPSWTGAQAIAHLLGAVVEMRIGGKVEFV 59
Query: 61 LLAVPVTFRSLK--NKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
F+++ ID+ W P+ + F Y++E ++ N V+
Sbjct: 60 PGNNATIFQAMDQGKGDIDVHPDVWLPNQQSFTQKYVDEAGTVTLSSNPYEGNQGFCVSQ 119
Query: 119 VG---------FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
LG + +++ PG + L
Sbjct: 120 DFGEANNVTDIADLGRPDVAALMDSDGNGKGELWIGAPGWASANVNEVKTRDYGL-LDFI 178
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG-------------E 216
+ A E ++I+ F ++PH + ++ L +
Sbjct: 179 DPVRAEESVKTARIKDSIAKGEGYAFYCYKPHAVWYMFDVRMLSEPTFDPEKYTMVQPSD 238
Query: 217 EISGFGEASVYT---------VVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQ 267
+ + ++SV T + + P I+ N + + I +
Sbjct: 239 DPDWYDKSSVATKDALKNVQIAWSNSLEGRSPAIAEFFANFALTADDVSGFAYEISGKGR 298
Query: 268 DRQFVGRTMLRTHPDLLKNWL 288
+ V R + +PD + WL
Sbjct: 299 EPADVAREWVEANPDRVDAWL 319
>gi|297180102|gb|ADI16326.1| ABC-type proline/glycine betaine transport systems, periplasmic
components [uncultured bacterium HF0070_11A08]
Length = 268
Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats.
Identities = 46/268 (17%), Positives = 96/268 (35%), Gaps = 19/268 (7%)
Query: 42 TAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIK 101
TA+ +LEE +GY + + + W ++ +E+G I
Sbjct: 1 TAVVGGLLEE-MGYNIEYVSAGALPQHPGIAQGNLHLQTEVWTNNVGDLYPGLVEKGDIV 59
Query: 102 LVAENLQGAKYMLAVNDVGFA--LGIKSYQDIAKYKKELGAKIY---GIEPGNEGNQRIL 156
+V K G+ SY+ + + ++ G +
Sbjct: 60 VVGNLGLEPKEGWIYPPYMEEKCPGLPSYKALFECQQAFANASTFPKGRLITYPADWGTR 119
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG- 215
++ + SE A ++++ P + + W+PH I +DL+++++
Sbjct: 120 SRDLVASVNMPFEPIPGGSEGAMMAELKSAYAAQEPILMMIWQPHWIFADLDLNWVEWNK 179
Query: 216 ------------EEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLIL 263
E GF +A V+ VV + +K P +++ N + EN + +
Sbjct: 180 IEGECVEESQEKETACGFQQAEVHKVVWGGFEEKWPAAFKMVSNFNLTNEDENWAIFEVD 239
Query: 264 NNKQDRQFVGRTMLRTHPDLLKNWLIGV 291
NN +D + V + L + L + W+
Sbjct: 240 NNGRDVKDVAKEWLAKNESLWRGWIKAA 267
>gi|228914885|ref|ZP_04078490.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus
thuringiensis serovar pulsiensis BGSC 4CC1]
gi|228844681|gb|EEM89727.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus
thuringiensis serovar pulsiensis BGSC 4CC1]
Length = 503
Score = 145 bits (366), Expect = 7e-33, Method: Composition-based stats.
Identities = 30/301 (9%), Positives = 86/301 (28%), Gaps = 31/301 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+++ + S + A ++ M ++E+ +K
Sbjct: 209 KRVILTICIVCIMVASPFLWNTEKKDIVIAGKLGSEPEILIQMYKQLIEQDTDLHVQLKP 268
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL-----------------EEGSIKL 102
F +LK+ +DI+ + +L F+ ++ ++ +
Sbjct: 269 GLGKTAFVFEALKSGEVDIYPEFSGTALSTFVKEEPKSTNRDEVYEQARVGMEKKYNMVM 328
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
+ Y LA+ + + + +E + M
Sbjct: 329 LKPMEYNNTYALAMPKKIADQNNINTISDLGNIAQDTKVGFTLE-FADREDGYKGMQKLY 387
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
+ + +E ++ V ++ + L + +
Sbjct: 388 NYKFSNVKTMEPKLR------YSAIQSGDVNVIDAYSTDSELEQYGLKVLKDDKGLF--P 439
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML-RT 279
++R + L K P + ++L + K + +M + N ++ + V + L +
Sbjct: 440 PYQGAPLLRKETLQKYPELEKVLNKLSGKITDEEMRKMNYEVNVNGKNSEEVAKQFLQKE 499
Query: 280 H 280
+
Sbjct: 500 N 500
>gi|298246848|ref|ZP_06970653.1| Substrate-binding region of ABC-type glycine betaine transport
system [Ktedonobacter racemifer DSM 44963]
gi|297549507|gb|EFH83373.1| Substrate-binding region of ABC-type glycine betaine transport
system [Ktedonobacter racemifer DSM 44963]
Length = 305
Score = 145 bits (366), Expect = 8e-33, Method: Composition-based stats.
Identities = 44/310 (14%), Positives = 86/310 (27%), Gaps = 42/310 (13%)
Query: 1 MYKILAVCLFLTTFSI----------SYARDADSCTPVRFADTGWTDIAATTAMTSVILE 50
M KI C+ L FS+ S + +++ M +L+
Sbjct: 1 MKKISLSCMILVVFSVLLSACGFGPGSAISGPKDSGTIVVGSKNFSENIIVGDMEYYLLK 60
Query: 51 EIL-GYKTNIK--LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIA--------------- 92
L G K L + V + +L++ +D ++ Y L +
Sbjct: 61 AKLKGVNVENKANLGSTAVLWNALQSGQLDTYVDYTGTGLVDILKMPVTHNPDEAYQTVK 120
Query: 93 -PYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEG 151
Y I + Y +AV + I+ ++G EP
Sbjct: 121 KEYPTRYHIDWLNPMGFNDTYAVAVPKTIAEKY--HLKKISDLAPIASQLVFGGEPDYFT 178
Query: 152 NQRILDMINNNKFSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIH 210
+ + L S + + NN V + +
Sbjct: 179 RP------DAYPGLSNTYGLHFQSLKQIDVGLKYQAAANNQVQVLDVYSTDGNLLRYGMT 232
Query: 211 YLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQD 268
L + F +VR L P IS +L ++ + + ++ + +
Sbjct: 233 VLED--DKHFFPPYYAAPIVRESTLKAHPEISSILNSLQNTLTDSSMLQLNYQVDVQHKS 290
Query: 269 RQFVGRTMLR 278
V + L+
Sbjct: 291 PDDVAQQFLK 300
>gi|229196508|ref|ZP_04323252.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus
m1293]
gi|228586864|gb|EEK44938.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus
m1293]
Length = 505
Score = 145 bits (365), Expect = 8e-33, Method: Composition-based stats.
Identities = 32/294 (10%), Positives = 84/294 (28%), Gaps = 17/294 (5%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+++ + S + A ++ M ++E+ +K
Sbjct: 211 KRVILTICIVCIMVASPFLWNTEKKDIVIAGKLGSEPEILIQMYKQLIEQDTDLHVQLKP 270
Query: 62 L--AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAE---NLQGAKYMLAV 116
F +LK+ +DI+ + +L F+ + + V E KY + +
Sbjct: 271 GLGKTSFVFEALKSGEVDIYPEFSGTALSTFVKEEPKSTNRDEVYEQARVGMEKKYSMVM 330
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGI------EPGNEGNQRILDMINNNKFSLKGFR 170
+ K + + D + K K +
Sbjct: 331 LKPMEYNNTYALAMPKKIADQKNISTISDLGNIAQDAKVGFTLEFADREDGYKGMQKLYN 390
Query: 171 LIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV 229
++ ++ + V ++ + L + + +
Sbjct: 391 YKFSNVKTMEPKLRYSAIESGDVNVIDAYSTDSELEQYGLKVLKDDKGLF--PPYQGAPL 448
Query: 230 VRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML-RTH 280
+R + L K P + ++L + K + +M + N + + V + L + +
Sbjct: 449 LRKETLQKYPELEKVLNELSGKITDEEMRKMNYEVNVNGKSSEEVAKQFLQKEN 502
>gi|114768909|ref|ZP_01446535.1| hypothetical protein OM2255_04245 [alpha proteobacterium HTCC2255]
gi|114549826|gb|EAU52707.1| hypothetical protein OM2255_04245 [alpha proteobacterium HTCC2255]
Length = 319
Score = 145 bits (365), Expect = 9e-33, Method: Composition-based stats.
Identities = 44/321 (13%), Positives = 91/321 (28%), Gaps = 39/321 (12%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+ K L L S+ V+ WT A + ++E +G +
Sbjct: 3 LKKSLITASLLAAMSV-----PAIAEDVKIGVPSWTGAQAMAHLLGAVVEMRIGGTVDYV 57
Query: 61 LLAVPVTFRSLK--NKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
F+ + ID+ W P+ E F Y++ ++ + V+
Sbjct: 58 PGNNATIFQGMDQGKGDIDVHPDVWLPNQESFTKKYVDGAGSVVLNQQPYEGNQGFCVSK 117
Query: 119 VGFALGIKSYQD---------IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
+ + +++ PG + + L
Sbjct: 118 DFAEANNITDIADLGRPDVAALMDSDGNGKGEMWIGAPGWASANVNEVKVRDYGL-LDFI 176
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG-------------E 216
I A E ++I+ F ++PH + ++ L +
Sbjct: 177 EPIRAEESVKTARIKDSIAKGEGYAFYCYKPHAVWFMFDVVMLSEPTYDAAKYTMVQPSD 236
Query: 217 EISGFGEASVYT---------VVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQ 267
+ + ++SV T D+ P I+ + + + I N +
Sbjct: 237 DADWYEKSSVSTKDALKQVQIAYSKSLPDRSPAIAEFFERFSVTADDVSNFAFEISGNGR 296
Query: 268 DRQFVGRTMLRTHPDLLKNWL 288
D R + +PD + WL
Sbjct: 297 DPAEFAREWVEANPDRVDAWL 317
>gi|297171176|gb|ADI22185.1| ABC-type proline/glycine betaine transport systems, periplasmic
components [uncultured gamma proteobacterium
HF0200_34B07]
gi|297171295|gb|ADI22301.1| ABC-type proline/glycine betaine transport systems, periplasmic
components [uncultured actinobacterium HF0200_46I24]
Length = 318
Score = 145 bits (365), Expect = 9e-33, Method: Composition-based stats.
Identities = 43/312 (13%), Positives = 100/312 (32%), Gaps = 24/312 (7%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
+ + + T +S A + ++ A WT +T + IL+ +GY
Sbjct: 7 VALITALIVTGQVSAAGMGATSEAIKLAMNEWTGQHISTHVAGEILK-RMGYSVEYVTAG 65
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG--F 121
++L++ + + W ++ + L G+++ + + +N+
Sbjct: 66 YYPQMQALEDNTVSATLEIWSSNIGEHYDKALASGNVEEIGDLGLVPVESWFINNAALEK 125
Query: 122 ALGIKSYQDIAKYKKELGAKIY---GIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
G+ Y+ + + G + ++ + L + SE A
Sbjct: 126 CPGLPDYKALHNCAEIFANAETFPKGRFVDYPADWGTSNVDRIAAWELDYTSVPAGSEGA 185
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE------------------ISG 220
++I+ + N P V + WEPH + + +++ +
Sbjct: 186 LIAEIKGAEARNEPLVIMFWEPHWLFAVVDLTNVNLPPYEDGCHDNPAVGVNPNATWDCD 245
Query: 221 FGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ + + + DK P LL + + MM I + V + +
Sbjct: 246 WARGYIKKMAWAGLKDKWPAAYELLSAYTLTNDDQIPMMNAIDQEGNKLEDVVSAWVDAN 305
Query: 281 PDLLKNWLIGVT 292
K W+ T
Sbjct: 306 EAKWKPWVDAAT 317
>gi|217959791|ref|YP_002338343.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Bacillus cereus AH187]
gi|229138985|ref|ZP_04267562.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus
BDRD-ST26]
gi|217066853|gb|ACJ81103.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Bacillus cereus AH187]
gi|228644340|gb|EEL00595.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus
BDRD-ST26]
Length = 503
Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats.
Identities = 32/301 (10%), Positives = 88/301 (29%), Gaps = 32/301 (10%)
Query: 3 KILAVCLFLTTFSISYAR-DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
K++ + + + ++ + A ++ M ++E+ +K
Sbjct: 209 KLVILTICIVCIMVASPFLWNTEKKDIVIAGKLGSEPEILIQMYKQLIEQDTDLHVQLKP 268
Query: 62 L--AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE-----------------EGSIKL 102
F +LK+ +DI+ + +L F+ + + S+ +
Sbjct: 269 GLGKTSFVFEALKSGEVDIYPEFSGTALSTFVKEEPKSTNRNEVYEQARVGMEKKYSMVM 328
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
+ Y LA+ S + + +E + M
Sbjct: 329 LKPMEYNNTYALAMPKKIADQKNISTISDLGNIAQDAKVGFTLE-FADREDGYKGMQKIY 387
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
+ + +E ++ V ++ + L + +
Sbjct: 388 NYKFSNVKTMEPKLR------YSAIQSGDVNVIDAYSTDSELEQYGLKVLKDDKGLF--P 439
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML-RT 279
++R + L K P + ++L + K + +M + N + + V + L +
Sbjct: 440 PYQGAPLLRKETLQKYPELEKVLNKLSGKITDEEMRKMNYEVNVNGKSSEEVAKQFLQKE 499
Query: 280 H 280
+
Sbjct: 500 N 500
>gi|269123352|ref|YP_003305929.1| Substrate-binding region of ABC-type glycine betaine transport
system [Streptobacillus moniliformis DSM 12112]
gi|268314678|gb|ACZ01052.1| Substrate-binding region of ABC-type glycine betaine transport
system [Streptobacillus moniliformis DSM 12112]
Length = 503
Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats.
Identities = 42/295 (14%), Positives = 81/295 (27%), Gaps = 20/295 (6%)
Query: 3 KILAVCLFLTTFSISYARDA---DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
K + + L+ S+ + +S + + M +++EE I
Sbjct: 206 KTILMASILSIISVGISFTPLSSNSEKTLVIGGKLGAEPELIINMYKLLIEEESDINVEI 265
Query: 60 KL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEE--------GSIKLVAENLQG 109
K + +LK+K IDI+ Y + + +E I Q
Sbjct: 266 KPNFGKTNFLYEALKSKSIDIYPEYTGTVITTLLKNPIENISNDSEEVYKIARDEIYKQD 325
Query: 110 AKYML---AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSL 166
L + K Y I K D + NK
Sbjct: 326 NLVFLKPSEFQNTYAIAVKKDYGQIHDLNKISDLSKIEKNAMAGFTLEFNDRKDGNKGLK 385
Query: 167 KGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV 226
+ L S + + + ++ L +++ V
Sbjct: 386 SIYGLNLKVRTMEPSLRYSAINSGNVDIIEIYSTDSKILIYDLKILEDDKKLF--PPYQV 443
Query: 227 YTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++R L P + +L+ + K S EM + + + V R L+
Sbjct: 444 APLLREKTLKDYPELKDILEKLSNKISSKEMIEMNYKVDVEGKSAREVAREYLKK 498
>gi|89894402|ref|YP_517889.1| hypothetical protein DSY1656 [Desulfitobacterium hafniense Y51]
gi|89333850|dbj|BAE83445.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 298
Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats.
Identities = 43/300 (14%), Positives = 80/300 (26%), Gaps = 33/300 (11%)
Query: 1 MYKIL----AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
M K L V + + A S + +T+ M + ++E
Sbjct: 1 MKKNLMIWSLVGMLMLALVGCSGSAAKSGETITVGSKNFTENIIIAHMMADLVEAHTDLT 60
Query: 57 TNIK--LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPY--------------LEEGSI 100
K L V + +L+N I ++ Y + + E SI
Sbjct: 61 VERKVNLGGSNVAWTALENNDIQMYPDYTGTIVANYYQEATGTSEETLAKTLALTAEDSI 120
Query: 101 KLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN 160
+ + Y LAV + + + I G E D +
Sbjct: 121 EALGSLGFNNTYTLAVTKETAQKY--NLKTYSDLVGVSDELILGCEFEF------KDRPD 172
Query: 161 NNKFSLKGFRLIEASELASFSQIR-RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
+ + I R V ++ ++ L E
Sbjct: 173 GYPGLQAAYNMNFKEVKGMDHGIMFRSLVEGEVDVVDAYATDGQIKVFDLVILEDDREFF 232
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+VR D LD+ P + +L + + + A E+ + + V L
Sbjct: 233 --PPYDCLPLVRQDTLDQYPELEEILNKLAGQINEADMQELNAKVDDQGMKEDVVAHDFL 290
>gi|313633935|gb|EFS00647.1| glycine betaine-binding protein [Listeria seeligeri FSL N1-067]
gi|313638507|gb|EFS03677.1| glycine betaine-binding protein [Listeria seeligeri FSL S4-171]
Length = 241
Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats.
Identities = 33/167 (19%), Positives = 76/167 (45%), Gaps = 2/167 (1%)
Query: 132 AKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI 191
+++ I GI+ G + I + ++L +S A S +++ ++
Sbjct: 32 KDLGEQINYTITGIDAGAGIMLATQNAIEDYHLDDDNWQLQTSSTAAMTSTLQKAIKDKR 91
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFS 251
P V W PH + + ++ +L + + G E +++T+VR + P+ +L N ++
Sbjct: 92 PIVVTGWTPHWMFTKFDLKFLEDPKNVYGNAE-NIHTIVRKGLKEDKPSAYEVLDNFFWT 150
Query: 252 VALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
+E+M + N+ D + + ++ +P+ + W GV DG++
Sbjct: 151 AEDMSEVMLEV-NDGVDPEEAAKKWVKNNPEKVAKWTDGVKKVDGEE 196
Score = 37.1 bits (84), Expect = 3.7, Method: Composition-based stats.
Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKN 73
++ W A+T + + L + +GY T I+ + + + S+
Sbjct: 193 DGEEIKLTYVAWDSEIASTNVVAEALRQ-VGYDTTIQAMEIQPMWASVAT 241
>gi|296502844|ref|YP_003664544.1| glycine betaine transport system permease/glycine betaine-binding
protein [Bacillus thuringiensis BMB171]
gi|296323896|gb|ADH06824.1| glycine betaine transport system permease protein/glycine
betaine-binding protein [Bacillus thuringiensis BMB171]
Length = 365
Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats.
Identities = 33/300 (11%), Positives = 87/300 (29%), Gaps = 32/300 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+++ + S + + A ++ M ++E+ +K
Sbjct: 71 KRVILTICIVCIMIASPFLWSTEKKDIVIAGKLGSEPEILIQMYKQLIEQDTDLHVQLKP 130
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL-----------------EEGSIKL 102
F +LK+ +DI+ + +L F+ ++ ++ +
Sbjct: 131 GLGKTAFVFEALKSGEVDIYPEFSGTALSTFVKEEPKSTNRDEVYEQARIGMEKKYNMIM 190
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
+ Y LA+ K+ I+ G D +
Sbjct: 191 LKPMEYNNTYALAMPKKIADQ--KNINTISDLGNVAQEAKVG------FTLEFADREDGY 242
Query: 163 KFSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
K K + ++ ++ + V ++ + L + +
Sbjct: 243 KGMQKLYNYKFSNVKTMEPKLRYSAIESGDVNVIDAYSTDSELEQYGLKVLKDDKGLF-- 300
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++R + L K P + ++L + K + +M + N + + V + L+
Sbjct: 301 PPYQGAPLLRKETLQKYPELEKVLNKLSGKITDEEMRKMNYEVNVNGKSSEEVAKQFLQK 360
>gi|30262289|ref|NP_844666.1| glycine betaine/L-proline ABC transporter, permease protein,
putative [Bacillus anthracis str. Ames]
gi|47527581|ref|YP_018930.1| glycine betaine/L-proline ABC transporter permease protein
[Bacillus anthracis str. 'Ames Ancestor']
gi|49185136|ref|YP_028388.1| glycine betaine/L-proline ABC transporter permease [Bacillus
anthracis str. Sterne]
gi|65319586|ref|ZP_00392545.1| COG1732: Periplasmic glycine betaine/choline-binding (lipo)protein
of an ABC-type transport system (osmoprotectant binding
protein) [Bacillus anthracis str. A2012]
gi|165870546|ref|ZP_02215200.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Bacillus anthracis str.
A0488]
gi|167639675|ref|ZP_02397945.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Bacillus anthracis str.
A0193]
gi|170686955|ref|ZP_02878174.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Bacillus anthracis str.
A0465]
gi|170706709|ref|ZP_02897168.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Bacillus anthracis str.
A0389]
gi|177649503|ref|ZP_02932505.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Bacillus anthracis str.
A0174]
gi|190565250|ref|ZP_03018170.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Bacillus anthracis
Tsiankovskii-I]
gi|227814902|ref|YP_002814911.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Bacillus anthracis str. CDC
684]
gi|229600162|ref|YP_002866626.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Bacillus anthracis str.
A0248]
gi|254684863|ref|ZP_05148723.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Bacillus anthracis str.
CNEVA-9066]
gi|254722271|ref|ZP_05184059.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Bacillus anthracis str.
A1055]
gi|254737310|ref|ZP_05195014.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Bacillus anthracis str.
Western North America USA6153]
gi|254751626|ref|ZP_05203663.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Bacillus anthracis str.
Vollum]
gi|254760145|ref|ZP_05212169.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Bacillus anthracis str.
Australia 94]
gi|30256920|gb|AAP26152.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Bacillus anthracis str. Ames]
gi|47502729|gb|AAT31405.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Bacillus anthracis str. 'Ames
Ancestor']
gi|49179063|gb|AAT54439.1| glycine betaine/L-proline ABC transporter, permease protein,
putative [Bacillus anthracis str. Sterne]
gi|164713701|gb|EDR19224.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Bacillus anthracis str.
A0488]
gi|167512384|gb|EDR87760.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Bacillus anthracis str.
A0193]
gi|170128440|gb|EDS97308.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Bacillus anthracis str.
A0389]
gi|170669006|gb|EDT19750.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Bacillus anthracis str.
A0465]
gi|172084577|gb|EDT69635.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Bacillus anthracis str.
A0174]
gi|190563277|gb|EDV17242.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Bacillus anthracis
Tsiankovskii-I]
gi|227004491|gb|ACP14234.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Bacillus anthracis str. CDC
684]
gi|229264570|gb|ACQ46207.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Bacillus anthracis str.
A0248]
Length = 503
Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats.
Identities = 30/301 (9%), Positives = 86/301 (28%), Gaps = 31/301 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+++ + S + A ++ M ++E+ +K
Sbjct: 209 KRVILTICIVCIMVASPFLWNTEKKDIVIAGKLGSEPEILIQMYKQLIEQDTDLHVQLKP 268
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL-----------------EEGSIKL 102
F +LK+ +DI+ + +L F+ ++ ++ +
Sbjct: 269 GLGKTAFVFEALKSGEVDIYPEFSGTALSTFVKEEPKSTNRDEVYEQARVGMEKKYNMVM 328
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
+ Y LA+ + + + +E + M
Sbjct: 329 LKPMEYNNTYALAMPKKIADQNNINTISDLGNIAQDTKVGFTLE-FADREDGYKGMQKLY 387
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
+ + +E ++ V ++ + L + +
Sbjct: 388 NYKFSNVKTMEPKLR------YSAIQSGDVNVIDAYSTDSELEQYGLKALKDDKGLF--P 439
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML-RT 279
++R + L K P + ++L + K + +M + N ++ + V + L +
Sbjct: 440 PYQGAPLLRKETLQKYPELEKVLNKLSGKITDEEMRKMNYEVNVNGKNSEEVAKQFLQKE 499
Query: 280 H 280
+
Sbjct: 500 N 500
>gi|229542095|ref|ZP_04431155.1| Substrate-binding region of ABC-type glycine betaine transport
system [Bacillus coagulans 36D1]
gi|229326515|gb|EEN92190.1| Substrate-binding region of ABC-type glycine betaine transport
system [Bacillus coagulans 36D1]
Length = 509
Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats.
Identities = 36/296 (12%), Positives = 87/296 (29%), Gaps = 33/296 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
IL + L + + D + A ++ M +++EE K +K
Sbjct: 217 ILMIVLIVGSLVAPNLLHKDGQKTIVIAGKLGSEPEILDNMYKLLIEENTDLKVKLKTGL 276
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL-----------------EEGSIKLVA 104
F +L++K ID++ + ++ + ++ + L+
Sbjct: 277 GDTTFVFNALQSKDIDLYPEFSGTAIVNMLKENPVSTDGKEVYAQAKAGMAKKYKMALLR 336
Query: 105 ENLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK 163
Y +AV +K D+ K ++++ A + +
Sbjct: 337 PMKFNDTYAIAVPQSFAKKYHLKKISDLVKVEQDVKAGFT--PEFADIKDGYPGLSKKYG 394
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+ + + + ++ ++ L + F
Sbjct: 395 LHFHVVTMDPSVR-------YHAIQQGKVNLMNAYSTDGELQRYHLVVLED--DKHFFPP 445
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
++R + +DK P I L + K + +M + + + V R L
Sbjct: 446 YQGSPLLRQETVDKYPEIVPALNKLAGKITNTQMQKMNYEVGVKGKKAEDVARAFL 501
>gi|196039936|ref|ZP_03107239.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Bacillus cereus NVH0597-99]
gi|196029195|gb|EDX67799.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Bacillus cereus NVH0597-99]
Length = 503
Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats.
Identities = 30/301 (9%), Positives = 85/301 (28%), Gaps = 31/301 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+++ + S + A ++ M ++E +K
Sbjct: 209 KRVILTICIVCIMVASPFLWNTEKKDIVIAGKLGSEPEILIQMYKQLIERDTDLHVQLKP 268
Query: 62 L--AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE-----------------EGSIKL 102
F +LK+ +DI+ + +L F+ + + ++ +
Sbjct: 269 GLGKTAFVFEALKSGEVDIYPEFSGTALSTFVKEEPKSTNRDEVYEQARVGMEKKYNMVM 328
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
+ Y LA+ + + + +E + M
Sbjct: 329 LKPMEYNNTYALAMPKKIADQNNINTISDLGNIAQDTKVGFTLE-FADREDGYKGMQKLY 387
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
+ + +E ++ V ++ + L + +
Sbjct: 388 NYKFSNVKTMEPKLR------YSAIQSGDVNVIDAYSTDSELEQYGLKVLKDDKGLF--P 439
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML-RT 279
++R + L K P + ++L + K + +M + N ++ + V + L +
Sbjct: 440 PYQGAPLLRKETLQKYPELEKVLNKLSGKITDEEMRKMNYEVNVNGKNSEEVAKQFLQKE 499
Query: 280 H 280
+
Sbjct: 500 N 500
>gi|330954739|gb|EGH54999.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae Cit 7]
Length = 277
Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats.
Identities = 42/286 (14%), Positives = 93/286 (32%), Gaps = 28/286 (9%)
Query: 40 ATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS 99
T + V+L++ G + +L I IF W + G
Sbjct: 2 LLTDILQVVLDKGYGCTVDPLPGNSIAMENALGTNDIQIFAEEWV-GRSEVWNKAAAAGK 60
Query: 100 IKLVAENLQGAKYMLAVNDV-----------GFALGIKSYQDIAKYKKELGA-------K 141
+ V + GA V A +KS D+A+Y +
Sbjct: 61 VVGVGAPIVGAVEGWYVPRYVIEGDAKRKLEAKAPNLKSISDLAQYSAVFKDQEEPSKGR 120
Query: 142 IYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPH 201
Y G +M+ + K + A + I + P + W P
Sbjct: 121 FYNCPAGWTCELENSEMLKSYGLESKYTNFRPGTGPALDAAILSSYKRGEPILTYYWSPT 180
Query: 202 PINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKL 261
P+ +++ L + + V + D+ P + +L+ + + L N+ +
Sbjct: 181 PLMGQVDLVRLEE--KAGVNKTIDIKVGVSKVFHDEAPELVAILEKVNLPIDLLNQNLGR 238
Query: 262 ILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ + + + + L+ HP++ W+ +D +++++ +
Sbjct: 239 MAKERIESPKLAKIFLKEHPEVWHKWVS-------EDAAKKVDASL 277
>gi|167632888|ref|ZP_02391214.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Bacillus anthracis str.
A0442]
gi|254743505|ref|ZP_05201190.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Bacillus anthracis str.
Kruger B]
gi|167531700|gb|EDR94365.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Bacillus anthracis str.
A0442]
Length = 503
Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats.
Identities = 30/301 (9%), Positives = 86/301 (28%), Gaps = 31/301 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+++ + S + A ++ M ++E+ +K
Sbjct: 209 KRVILTICIVCIMVASPFLWNTEKKDIVIAGKLGSEPEILIQMYKQLIEQDTDLHVQLKP 268
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL-----------------EEGSIKL 102
F +LK+ +DI+ + +L F+ ++ ++ +
Sbjct: 269 GLGKTAFVFEALKSGEVDIYPEFSGTALSTFVKEEPKSTNRDEVYEQARVGMEKKYNMVM 328
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
+ Y LA+ + + + +E + M
Sbjct: 329 LKPMEYNNTYALAMPKKIADQNNINTISDLGNIAQDTKVGFTLE-FADREDGYKGMQKLY 387
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
+ + +E ++ V ++ + L + +
Sbjct: 388 NYKFSNVKTMEPKLR------YSAIQSGDVNVIDAYSTDSELEQYGLKALKDDKGLF--P 439
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML-RT 279
++R + L K P + ++L + K + +M + N ++ + V + L +
Sbjct: 440 PYQGAPLLRKETLQKYPELEKVLNKLSGKITDEEMRKMNYEVNVNGKNSEEVAKQFLQKE 499
Query: 280 H 280
+
Sbjct: 500 N 500
>gi|160878279|ref|YP_001557247.1| substrate-binding region of ABC-type glycine betaine transport
system [Clostridium phytofermentans ISDg]
gi|160426945|gb|ABX40508.1| Substrate-binding region of ABC-type glycine betaine transport
system [Clostridium phytofermentans ISDg]
Length = 523
Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats.
Identities = 38/295 (12%), Positives = 97/295 (32%), Gaps = 31/295 (10%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLA 63
+ + +A++ + +T+ A + + ++E K + L
Sbjct: 232 VFAIIAIFVFTAKGTNANNQKVITIGSKDFTEQAILGNLVADLIEGNTDIKVNRKLDLGG 291
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFI----------------APYLEEGSIKLVAENL 107
V F +L ID+++ Y + + + + +I ++ +
Sbjct: 292 TQVCFSALNKGEIDMYVEYSGTAYLSALGHTEKKDKDQVFDIVKDEFKSKYNIDVLKQMN 351
Query: 108 QGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSL 166
Y LAV A +K+ D+AK + + + + + F++
Sbjct: 352 FNNTYALAVTKEAAAKYQLKNISDLAKIAQTMKSGTT--FEFLNREDGLPGLQKEYGFTI 409
Query: 167 KGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV 226
I+ + N + ++ + + L + + F
Sbjct: 410 GETVAIDGAPR------YTALVNKDVDIIDAFTTDGLLKKFGLAVLED--DKAFFPPYYA 461
Query: 227 YTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+VRS+ L++ P I LL+ + + + E+ + ++ + V + L+
Sbjct: 462 MPIVRSESLEQHPEIIPLLEELGDVLTNDIMLELNYQVDELQKSPEAVAKEFLKN 516
>gi|289434284|ref|YP_003464156.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Listeria seeligeri
serovar 1/2b str. SLCC3954]
gi|289170528|emb|CBH27068.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Listeria seeligeri
serovar 1/2b str. SLCC3954]
Length = 300
Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats.
Identities = 33/167 (19%), Positives = 76/167 (45%), Gaps = 2/167 (1%)
Query: 132 AKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI 191
+++ I GI+ G + I + ++L +S A S +++ ++
Sbjct: 32 KDLGEQINYTITGIDAGAGIMLATQNAIEDYHLDDDNWQLQTSSTAAMTSTLQKAIKDKR 91
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFS 251
P V W PH + + ++ +L + + G E +++T+VR + P+ +L N ++
Sbjct: 92 PIVVTGWTPHWMFTKFDLKFLEDPKNVYGNAE-NIHTIVRKGLKEDKPSAYEVLDNFFWT 150
Query: 252 VALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
+E+M + N+ D + + ++ +P+ + W GV DG++
Sbjct: 151 AEDMSEVMLEV-NDGVDPEEAAKKWVKNNPEKVAKWTDGVKKVDGEE 196
Score = 60.6 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 2/97 (2%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYW 83
++ W A+T + + L + +GY T I+ + + + S+ D + W
Sbjct: 193 DGEEIKLTYVAWDSEIASTNVVAEALRQ-VGYDTTIQAMEIQPMWASVATDAADGMVAAW 251
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
P+ +G + + NL+GAK LAV
Sbjct: 252 LPNTSGIYYK-DYKGKFEDLGANLKGAKIGLAVPKYM 287
>gi|56418850|ref|YP_146168.1| hypothetical protein GK0315 [Geobacillus kaustophilus HTA426]
gi|56378692|dbj|BAD74600.1| hypothetical protein [Geobacillus kaustophilus HTA426]
Length = 299
Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats.
Identities = 39/304 (12%), Positives = 96/304 (31%), Gaps = 35/304 (11%)
Query: 1 MYK--ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K + + + L + + +D+ + + +T+ T + + ++
Sbjct: 1 MRKWMMTLLAVGLVFGLAACSGTSDAKGKIVISGKKFTEQVILTHLLAEYVKANTDLDVE 60
Query: 59 IK--LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP------------------YLEEG 98
+K L + ++++N +D+++ Y + Y E+
Sbjct: 61 VKDSLGGAFMLQQAIENGDVDMYVEYTGTGYLNILKQPYDPKKTPEQIYNETKKLYKEKY 120
Query: 99 SIKLVAENLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILD 157
+I + Y LA+ G+K+Y D+AK+ E +
Sbjct: 121 NIAWLKPLGFNNTYALAMRRDLAEKLGVKTYSDLAKH--SSSLTFGSDAEFFERSDGYDG 178
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
+++ F K I+ +N V ++ ++ L +
Sbjct: 179 LVDTYGFQFKKKVTIDPDLQ------YEAAKNGEIDVITAYTTDARIKKYDLVVLKD--D 230
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRT 275
F ++R + LD P++ L + + E+ + + + V
Sbjct: 231 KQYFPPYHAVPIIRQEVLDANPDLEEKLNKLANILTDEKMMELNGEVNLEGKRPREVAID 290
Query: 276 MLRT 279
L+
Sbjct: 291 FLKA 294
>gi|83814625|ref|YP_444579.1| glycine betaine ABC transporter glycine betaine-binding protein,
putative [Salinibacter ruber DSM 13855]
gi|83756019|gb|ABC44132.1| glycine betaine ABC transporter glycine betaine-binding protein,
putative [Salinibacter ruber DSM 13855]
Length = 339
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 59/278 (21%), Positives = 114/278 (41%), Gaps = 12/278 (4%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVT-FRSLKNKGIDIFMGYWYP 85
P++ W + A + M + +LE+ L ++K F S+ D F W P
Sbjct: 50 PLKMVTVNWIEGLAMSYMQAQVLEDSLNVPVDLKEAQGGGIAFSSVAEGDRDFFNEAWLP 109
Query: 86 SLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGI 145
+ + +G ++ + +G L V + ++S +I +Y++ LG KIYGI
Sbjct: 110 TTHQNSWG-DLQGQLQKLGYTYRGTSGGLVVPAY---MDLRSAANIGEYREALGEKIYGI 165
Query: 146 EPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINS 205
E G+ N I +++ + GF ++ AS A++ ++R ++ P + W+PH S
Sbjct: 166 EAGSPTNDNIRQVLDQHGIE--GFSVVAASGPATWQRLRSAIQDRQPIIVAGWKPHWKWS 223
Query: 206 DLNIHYLPGGEEIS---GFGEASVYTVVRSDYLDKCP-NISRLLKNIKFSVALENEMMKL 261
++ YL G+ ++TVV + ++D+ P L+ + + +M
Sbjct: 224 AFDLRYLKDGKTNQSPAYGPPEDIFTVVDNQFIDEFPKEAVCFLQKFEVTDQQIGSLMNT 283
Query: 262 ILNNK-QDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
+ +R HP + WL D
Sbjct: 284 FRTRGDMSKSGAAEQWVRNHPGYVTQWLDQAEACAASD 321
>gi|222081716|ref|YP_002541081.1| glycine betaine/L-proline ABC transporter [Agrobacterium
radiobacter K84]
gi|221726395|gb|ACM29484.1| glycine betaine/L-proline ABC transporter [Agrobacterium
radiobacter K84]
Length = 292
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 43/287 (14%), Positives = 97/287 (33%), Gaps = 12/287 (4%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+ ++ + W D+ T +T +LE+ GY +
Sbjct: 11 KTLWKALCAAAMVGMTMLPARAEEKTITMGTLSWEDLTPITGITKKVLEDS-GYTVKVTE 69
Query: 62 LAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ + + +L I + + + + ++ ++ G L V
Sbjct: 70 FSEWGIAYAALSKGDIQVLASQTDYVAQDYWDK--NKNRLEKISPVSHGLYQALVVPKYV 127
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
I S + + + + G KI GIEPG+ + + + L +L+E S A
Sbjct: 128 P---IDSVEQLNENADKFGGKIIGIEPGSGLMRDAANAVKAYDLKL---QLVEGSTAAMT 181
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ ++ V WEP + + +L + I ++ Y + + P+
Sbjct: 182 AALKSAIDRKEWIVTTIWEPSWMAQKYEVKFLKDPKGIFPPPQSY-YWIGHKGFSADYPH 240
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
++ ++ +A + + + + + +H DLLK W
Sbjct: 241 AREVMASVYIPLADITSINGEV-KDGKTMDQAVKDWTDSHADLLKRW 286
>gi|302390703|ref|YP_003826524.1| Substrate-binding region of ABC-type glycine betaine transport
system [Thermosediminibacter oceani DSM 16646]
gi|302201331|gb|ADL08901.1| Substrate-binding region of ABC-type glycine betaine transport
system [Thermosediminibacter oceani DSM 16646]
Length = 306
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 46/312 (14%), Positives = 95/312 (30%), Gaps = 43/312 (13%)
Query: 1 MYKILAVCLFLTTFSISYAR--------DADSCTPVRFADTGWTDIAATTAMTSVILEEI 52
M + L + + ++ A S + +T+ M + ++E
Sbjct: 1 MKRNLLMGISAVLITVLIASCGLGGGARRGASGDTIVVGSKNFTEQIIVGNMVADLIEAH 60
Query: 53 LGYKT--NIKLLAVPVTFRSLKNK----GIDIFMGYWYPSLEKFI--------------- 91
K + L V F +LK GID+++ Y L +
Sbjct: 61 TDLKVVRKMNLGGTSVCFEALKRGGANNGIDVYVEYTGTGLVNILGMEAITDPDKAYETV 120
Query: 92 -APYLEEGSIKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGN 149
+ + +I + + LAV + I+++ D+ K +L G
Sbjct: 121 AKEFKDRWNIVWLEPLGFNNTFTLAVKEDFAREHKIETFSDLEKISDQLVLG--GTMEFM 178
Query: 150 EGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNI 209
E + F K + N+ V ++ + N+
Sbjct: 179 ERPDGYPGLKEKYGFKFKETK------SMDIGLRYTAIANDEVQVIDAFATDGLLVRHNL 232
Query: 210 HYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQ 267
L + F V+R D L+K P + +L + + S ++ L+ +
Sbjct: 233 KILQD--DKHFFPPYYAAPVIRQDVLEKYPQLKDILNQLASQISDEEMQKLNYLVDGEGK 290
Query: 268 DRQFVGRTMLRT 279
+ V + L+
Sbjct: 291 EAAEVAKEFLKE 302
>gi|260460412|ref|ZP_05808664.1| Substrate-binding region of ABC-type glycine betaine transport
system [Mesorhizobium opportunistum WSM2075]
gi|259034057|gb|EEW35316.1| Substrate-binding region of ABC-type glycine betaine transport
system [Mesorhizobium opportunistum WSM2075]
Length = 324
Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats.
Identities = 45/309 (14%), Positives = 91/309 (29%), Gaps = 27/309 (8%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
+A+ + A +S P++ A WT + + ILE LGY
Sbjct: 15 VALATLSLLTPSAKAAAPESNDPIKIALFDWTSVNLNAKILGGILE-KLGYTVEYPTADY 73
Query: 65 -PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA- 122
L N +D+ + +W + + + G + + + AK +
Sbjct: 74 LSSLTTGLTNGDLDVGLEFWDTTAGEAMKASDATGQTERLGKLGPKAKEEWWFPEYMKEK 133
Query: 123 -LGIKSYQDI--AKYKKELGAKIY---GIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
G+ +++ + K + G G D L + ++
Sbjct: 134 CPGLPNWEALKDPKCAEAFSTAETAPKGRYLGGPVTWEGFDDERVEALKLPFTVIHAGTD 193
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI------------------ 218
A F+++ + P + + PH + ++ E
Sbjct: 194 AAMFAELDSAYQRKAPIMLWIYSPHWAPAKYKGEWVQFPEYTPECYNDPKWGVNPDAKYD 253
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLR 278
G ++ S DK P ++ K N+M I + + + V +
Sbjct: 254 CGKPHGEIWKYSWSGMKDKWPVAYKVAKAYTVDTDELNKMSGEIDLDGKTPEDVAAAWIA 313
Query: 279 THPDLLKNW 287
H K W
Sbjct: 314 AHESDWKAW 322
>gi|239630002|ref|ZP_04673033.1| ABC-type proline/glycine betaine transport system protein
[Lactobacillus paracasei subsp. paracasei 8700:2]
gi|239527614|gb|EEQ66615.1| ABC-type proline/glycine betaine transport system protein
[Lactobacillus paracasei subsp. paracasei 8700:2]
Length = 300
Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 65/163 (39%), Gaps = 2/163 (1%)
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
+ I GI+ G + K ++L +S A S +++ + P V
Sbjct: 38 PQFNYTITGIDAGAGVMTSTDKALKAYGLVDKKWQLQPSSTAAMTSTLQKAIADKRPIVV 97
Query: 196 LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
W PH + + + +L + + G E ++T+VR P ++L ++
Sbjct: 98 TGWTPHWMFTKFPLKFLKDPKNVYGKTE-QIHTIVRKGLKQDAPQAYQVLDQFHWTPEEM 156
Query: 256 NEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
+ +M + N +D + ++ HP+ + W GVT G+
Sbjct: 157 SSVMLAV-NGGKDPAEAAKAFVKKHPEQIAQWTKGVTHVSGKP 198
Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 2/102 (1%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGY 82
+ W A+T + + +L + +GY I+ + + S+ K D +
Sbjct: 195 SGKPKLTMTYIAWDSEIASTNVVATVLRQ-IGYNVTIRAMEPQPVWASVATKAADAQVSA 253
Query: 83 WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
W P+ + + + + NL GAK LAV +
Sbjct: 254 WLPNTSAKLYS-DYKNQVVDLGVNLDGAKVGLAVPKYMKNIN 294
>gi|83950285|ref|ZP_00959018.1| glycine betaine/L-proline ABC transporter, periplasmic binding
protein, putative [Roseovarius nubinhibens ISM]
gi|83838184|gb|EAP77480.1| glycine betaine/L-proline ABC transporter, periplasmic binding
protein, putative [Roseovarius nubinhibens ISM]
Length = 318
Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats.
Identities = 37/319 (11%), Positives = 92/319 (28%), Gaps = 31/319 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K+ + S + A V D WT A + ++E LG + I
Sbjct: 1 MKKMTHMLAGAMLLSSGASVMAAEDATVAIGDLTWTGAQAIGHVIQAVIEGPLGSEAKIV 60
Query: 61 LLAVP----VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ D++ W P+ + +++ G + M
Sbjct: 61 AGLSDGSIIAAGMDKGDGSADVYTDLWMPNRQALWDEFIDGAQTVGHNSPYLGTQKMYVP 120
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYG------IEPGNEGNQRILDMINNNKFSLKGFR 170
+ + + + G + G + + + S +
Sbjct: 121 SYMADRITSMEDLKDPEIAAMFDKDGNGKGEYWAGDAGWKSTRMWQVKFKSYGLSEL-WE 179
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE------------- 217
+ +Q++ + P +F W P +++ ++ +
Sbjct: 180 PEVLPDATFKAQLKTAVQREQPIMFYYWTPEWVHAAYDLTAIEEPARTEGCEDVDLDKED 239
Query: 218 -------ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQ 270
+A ++ + P +++ L ++ A+ N + I +K D +
Sbjct: 240 WLEASSFACASKDAEIFVAYSKSLETRNPPVAKFLSQMQLDPAVVNGWILKIGRDKLDPR 299
Query: 271 FVGRTMLRTHPDLLKNWLI 289
V + + D++ W+
Sbjct: 300 DVAEEWVAENMDVVNEWIK 318
>gi|126739083|ref|ZP_01754777.1| hypothetical protein RSK20926_21824 [Roseobacter sp. SK209-2-6]
gi|126719700|gb|EBA16408.1| hypothetical protein RSK20926_21824 [Roseobacter sp. SK209-2-6]
Length = 366
Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats.
Identities = 45/311 (14%), Positives = 91/311 (29%), Gaps = 34/311 (10%)
Query: 11 LTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRS 70
L +A A + V+ WT A + ++E +G K F++
Sbjct: 55 LAAAVSIFATPAFAAEEVKIGVPSWTGAQAIAHLLGAVVEMRIGGKVEYVPGNNATIFQA 114
Query: 71 LK--NKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND---------V 119
+ ID+ W P+ + F Y++ ++ N V+
Sbjct: 115 MDQGKGDIDVHPDVWLPNQQSFTQKYVDGAGTVTLSSNPYEGNQGFCVSKAFGEANNITD 174
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
LG + +++ PG + L I A E
Sbjct: 175 IADLGRPDVATLMDSDGNGKGEMWIGAPGWASANVNEVKTRDYGL-LDFIEPIRAEESVK 233
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG-------------EEISGFGEASV 226
++I+ F ++PH + ++ L ++ + ++SV
Sbjct: 234 TARIKDSIAKGEGYAFYCYKPHAVWFMFDVEMLSEPTFDPAKYVMVQPSDDPDWYEKSSV 293
Query: 227 YT---------VVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTML 277
T + + P I+ N + + I ++ V R +
Sbjct: 294 ATKDALKNVQIAWSNSLEGRSPAIAEFFANFALTADDVSGFAYEISGKGREPSEVAREWV 353
Query: 278 RTHPDLLKNWL 288
+PD + WL
Sbjct: 354 EANPDRVDAWL 364
>gi|159043987|ref|YP_001532781.1| glycine betaine ABC transporter substrate binding protein
[Dinoroseobacter shibae DFL 12]
gi|157911747|gb|ABV93180.1| substrate-binding region of ABC-type glycine betaine transport
system [Dinoroseobacter shibae DFL 12]
Length = 321
Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats.
Identities = 47/321 (14%), Positives = 95/321 (29%), Gaps = 35/321 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M L T S+ A A + V WT A + ++ +G +
Sbjct: 1 MKTTLKSFGLATAVSV-LALPALASEKVSIGVPSWTGAQAIAHVLGEVVTSRIGGEVEYV 59
Query: 61 LLAVPVTFRSLK--NKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
F+++ ID+ W P+ E F Y++E ++ N V
Sbjct: 60 PGNNATIFQAMDQGRGDIDVHPDVWLPNQESFTNKYVDEAGTVTLSSNPYQGNQGFCVTQ 119
Query: 119 VGFALGIKSYQD---------IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
A + + +++ PG + + L
Sbjct: 120 DFAAAHDITDIADLGRPDVAALMDSDGNGRGEMWIGAPGWASANVNEVKVRDYGL-LDFI 178
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG-------------E 216
I A E ++I+ F +EPH + ++ L +
Sbjct: 179 EPIRAEEAVKTARIKDSIAKGEGYAFYCYEPHAVWFMFDVTMLTEPTFDPAKYVMVQPSD 238
Query: 217 EISGFGEASVYT---------VVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQ 267
+ + ++ V T + +D+ P I+ N + + +++ I +
Sbjct: 239 DADWYEKSMVATKDALKDVQIAWSNSLVDRSPAIAEFFANFQLNAEDVSQLAYQISAQGR 298
Query: 268 DRQFVGRTMLRTHPDLLKNWL 288
D V + + D + WL
Sbjct: 299 DPAEVAAEWVNANSDRVDGWL 319
>gi|237739884|ref|ZP_04570365.1| glycine betaine transport system permease [Fusobacterium sp.
2_1_31]
gi|229423492|gb|EEO38539.1| glycine betaine transport system permease [Fusobacterium sp.
2_1_31]
Length = 513
Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats.
Identities = 36/283 (12%), Positives = 88/283 (31%), Gaps = 31/283 (10%)
Query: 18 YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL---LAVPVTFRSLKNK 74
++ ++ + A T+ M + ++E+ K N+ ++
Sbjct: 234 FSLNSKKDKTINIATKPMTEGYILGQMLTELIEQDTDLKVNMTTGVGGGTSNIQPAMVKG 293
Query: 75 GIDIFMGYWYPSLEKFIAP---------------YLEEGSIKLVAENLQGAKYMLAVNDV 119
D++ Y S E + Y E+ +++ V Y LAVN
Sbjct: 294 EFDLYPEYTGTSWEAVLKKEGSYDESKFDELQKEYKEKYNLEYVNLYGFNNTYGLAVNKD 353
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ + + K I+G E E ++ + +
Sbjct: 354 IAEKY--NLKTYSDLAKVSNNLIFGAEYDFFEREDGYKELQKVYNMNF------KKQIDM 405
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+ ++ V + + + ++ L ++ + TVVRS+ L +
Sbjct: 406 DIGLKYQAMKDKKIDVMVIFTTDGQLAISDVVVLEDDKK--MYPSYRAGTVVRSEILSEY 463
Query: 239 PNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
P + +L+ + ++ + + + + V R L+
Sbjct: 464 PELKPVLEKLNNILDDKTMADLNYQVESEGKKPEDVAREYLQE 506
>gi|16800084|ref|NP_470352.1| hypothetical protein lin1015 [Listeria innocua Clip11262]
gi|16413474|emb|CAC96246.1| gbuC [Listeria innocua Clip11262]
gi|313619572|gb|EFR91236.1| glycine betaine-binding protein [Listeria innocua FSL S4-378]
Length = 300
Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats.
Identities = 33/167 (19%), Positives = 77/167 (46%), Gaps = 2/167 (1%)
Query: 132 AKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI 191
+++ I GI+ G + I + ++L +S A S +++ ++
Sbjct: 32 KDLGEQINYTITGIDAGAGIMLATQNAIKDYHLDDDNWQLQTSSTAAMTSTLQKAMKDKR 91
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFS 251
P V W PH + + ++ +L + + G E +++T+VR ++ P+ ++L N ++
Sbjct: 92 PIVVTGWTPHWMFTKFDLKFLDDPKNVFGNAE-NIHTIVRKGLKEEKPSAYKVLDNFFWT 150
Query: 252 VALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
+E+M + N+ D + + ++ +P+ + W GV DG +
Sbjct: 151 AEDMSEVMLEV-NDGVDPEEAAKKWIKNNPEKVAKWTDGVEKVDGDE 196
Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 2/110 (1%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYW 83
++ W A+T + + L++ +GYK I+ + + + S+ D + W
Sbjct: 193 DGDEIKLTYVAWDSEIASTNVVAEALKQ-VGYKPTIQAMEIQPMWASVATDAADGMVAAW 251
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAK 133
P+ +G + + NL+GAK LAV + I+K
Sbjct: 252 LPNTSGIYYK-DYKGKFEDLGPNLKGAKIGLAVPKYMTNINSIEDLKISK 300
>gi|33866449|ref|NP_898008.1| glycine betaine/proline ABC transporter ATP-binding protein
[Synechococcus sp. WH 8102]
gi|33633227|emb|CAE08432.1| ABC transporter binding protein, glycine betaine/proline family
[Synechococcus sp. WH 8102]
Length = 321
Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats.
Identities = 42/269 (15%), Positives = 96/269 (35%), Gaps = 9/269 (3%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYW 83
+ P++ + W D + M + ++E L + + + ++S+ +D+ + W
Sbjct: 58 ASAPLKLGWSPWADAEVVSLMATQLIESELNQPVERVMADIGIQYQSVARGDLDLMLMAW 117
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAK 141
P + + + + G + V D I S + + + +
Sbjct: 118 LPGTHLDYWSKVRD-RVLDLGPMYSG-RLGWIVPDYVPEEVIASIEQLQDPQLAARFDGR 175
Query: 142 IYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPH 201
+ GI+PG+ NQ L +N L+ +S A + + + + SW PH
Sbjct: 176 VQGIDPGSGLNQASLKALNQYGL--TSMELVASSSAAMAAVLAQAIDEQRWLIATSWTPH 233
Query: 202 PINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKL 261
+ + + +L + G E ++ V R P ++ L + + ++
Sbjct: 234 WMFARYKLRFLDDPKGSFGATE-RIHAVARQGLDQLHPAVTAFLSRFHLPESDLDGLLLQ 292
Query: 262 ILNNKQDRQFVGRTMLRTHPDLLKNWLIG 290
+ + L HP+ ++ W G
Sbjct: 293 AQES--SAETAVSIYLARHPNRVRYWTTG 319
>gi|260584819|ref|ZP_05852564.1| choline transporter [Granulicatella elegans ATCC 700633]
gi|260157476|gb|EEW92547.1| choline transporter [Granulicatella elegans ATCC 700633]
Length = 506
Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats.
Identities = 35/302 (11%), Positives = 79/302 (26%), Gaps = 37/302 (12%)
Query: 3 KILAVCLFLTTFSISYARDA-----DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
K + + + + + + A + M +++E+ K
Sbjct: 207 KTILSAFLVLIIGLGASYAPTIAKMQTSDKLVIAGKLGPEPEILMNMYKLLIEDQTKLKV 266
Query: 58 NIKL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------E 97
+K + +LK IDI+ + E + + +
Sbjct: 267 EVKPNFGKTNFLYEALKKGDIDIYPEFSGTITESLLKNKPKVSHEPEEVYEVARKGILEQ 326
Query: 98 GSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILD 157
+ Y +AV + K D
Sbjct: 327 DGFVFLKPMAYQNTYAVAVPKSLAEAEKLTKISDLK--------KVNRPLKAGFTLEFND 378
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
+ NK + L + + ++ V ++ S + L +
Sbjct: 379 REDGNKGLQSMYGLQLDVATMEPALRYQAIQSGDIQVTDAYSTDAEISRYQLKVLED--D 436
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
F +++ + L K P + +L + K S ++M + N + + V R
Sbjct: 437 KQLFPPYQGAPLMKQELLKKHPELEEILNQLAGKISEEEMSQMNFEVGANGRPAEEVARE 496
Query: 276 ML 277
L
Sbjct: 497 YL 498
>gi|312961045|ref|ZP_07775550.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas fluorescens WH6]
gi|311284703|gb|EFQ63279.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas fluorescens WH6]
Length = 299
Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats.
Identities = 57/281 (20%), Positives = 112/281 (39%), Gaps = 9/281 (3%)
Query: 8 CLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVT 67
S S A+ P+R W+D + L + L + L + +
Sbjct: 12 LAGFAMASSSLFAQAEEPAPIRIGWVNWSDTEIAVKLADTALRDHLKQPVKLILADIGIQ 71
Query: 68 FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKS 127
F++L N ID+ W PS K ++ ++ + +G + +AV I S
Sbjct: 72 FQALANGNIDLIPMVWLPSTHKSFYDKYKD-RLEDLGVLYEG-RIGMAVPTSIPTSEIAS 129
Query: 128 YQDIAKY--KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
+D+ K +++LG KI E GN + I K G++++ +SE S++ R
Sbjct: 130 VEDLNKPEVREKLGGKILTSEVGNGQYKLTEKAIEEYKLD--GYKMVASSESGMLSELDR 187
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
+ + ++ +W PH + + + YL ++I G G ++ V R + + P+++R
Sbjct: 188 NLKRGKWSLINAWSPHWMFAKWPLRYLDDPKQIFG-GAEQIHAVARKGFSAEHPDVARFF 246
Query: 246 KNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKN 286
N K A ++M ++ V + +
Sbjct: 247 ANFKIPKADLEKLMAAARDS--SADKVVAEYYAANKPRFEA 285
>gi|118443723|ref|YP_879094.1| glycine betaine/carnitine/choline ABC transporter [Clostridium
novyi NT]
gi|118134179|gb|ABK61223.1| probable glycine betaine/carnitine/choline ABC transporter
[Clostridium novyi NT]
Length = 528
Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats.
Identities = 49/304 (16%), Positives = 100/304 (32%), Gaps = 38/304 (12%)
Query: 3 KILAVCLFLTTFSISYARDA----DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
K +A+ + + ++ A D + +T+ M + +LEE K
Sbjct: 231 KKIAITVVIIICTVLGGTLAYRIYDDNRSIVVGSKNYTEELILGNMYATLLEENTDLKVK 290
Query: 59 ---IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFI----------------APYLEEGS 99
I L VTF++L++ ID+++ Y +L + + +E
Sbjct: 291 RTGINLGGAGVTFQALRSGDIDLYVEYTGVALVNIMGRKAINDPEKTFKIVKDYFNKEYD 350
Query: 100 IKLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
I + + Y+LAV +K+ D+AK L D
Sbjct: 351 ITWMDQMGYNNTYVLAVAKETAKKYGLKTLSDLAKVSNNLVL---------GCTMEFSDR 401
Query: 159 INNNKFSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
+ + + + + ++ V ++ + N+ L +
Sbjct: 402 QDGYLGMKDFYNMNVKDVKSLDGSLRYSALQSKEADVIDAFATDGLLKVYNLTRLED--D 459
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
F ++R+D L K P + ++L + K S E+ + +D + V
Sbjct: 460 KHFFPPYYAAPIIRNDVLKKHPELKKVLNMLAGKVSEDDMTELNYKVDKLGEDPRKVADD 519
Query: 276 MLRT 279
LR
Sbjct: 520 FLRK 523
>gi|149204705|ref|ZP_01881669.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Roseovarius sp. TM1035]
gi|149141814|gb|EDM29866.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Roseovarius sp. TM1035]
Length = 312
Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats.
Identities = 52/315 (16%), Positives = 95/315 (30%), Gaps = 38/315 (12%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP 65
TT + S A A V W + T + ++E +G K ++ P
Sbjct: 5 IATALATTLAFSTASFAQD---VVVGVPNWPSVTVTANVIKQVVETNMGLKVELQTGTNP 61
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
V F +L + I W P+ + + + + + N A + VN GI
Sbjct: 62 VIFEALDKGSMHIHPEVWLPNQQGLVDQFAAK---IELNSNSTSAVQGICVNQAALDAGI 118
Query: 126 KSYQDIAKYKKELGAKIYG--------IEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
D+ K G G + + L L+E E
Sbjct: 119 VDISDLTDPTKAALLDSDGNGKGEVFIGATGWASTTVEKAKAHGYGYDLV-VDLVELDEG 177
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDL-----------------------NIHYLPG 214
++SQ+ P ++PH + + + YL
Sbjct: 178 VAYSQLDTAIAGAKPWAGFCYKPHHLFTVHPEMTFLTEPAYDAAKWNALTPEEDADYLAN 237
Query: 215 GEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGR 274
+ A + V D P ++ L++NI + ++ + +D V
Sbjct: 238 SNVTMAWPPAFIQPVFAKDMEANAPQVAALMRNIDITADDLGAFSYSVVIDGKDAGAVAA 297
Query: 275 TMLRTHPDLLKNWLI 289
+ +PD + WL
Sbjct: 298 EWITANPDRVAAWLK 312
>gi|331089877|ref|ZP_08338770.1| hypothetical protein HMPREF1025_02353 [Lachnospiraceae bacterium
3_1_46FAA]
gi|330403574|gb|EGG83132.1| hypothetical protein HMPREF1025_02353 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 311
Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats.
Identities = 51/314 (16%), Positives = 91/314 (28%), Gaps = 46/314 (14%)
Query: 1 MYKILAV----CLFLTTFSISYARDADSCT---------PVRFADTGWTDIAATTAMTSV 47
+ KI A+ L L+ + D PV+ A T+ M
Sbjct: 3 LKKITALFLTGALILSMAGCAGNGSKDKKEGSAGNEAQEPVKIATKPMTEQFILGEMLKK 62
Query: 48 ILEEILGYKTNIKL---LAVPVTFRSLKNKGIDIFMGYWYPSL----------------- 87
++EE GY+ + +++ D++ Y
Sbjct: 63 LIEEKAGYEVELTKGIGGGTSNIQPAMEKGEFDLYPEYTSSGWILVLGHKAGEVSDDKML 122
Query: 88 EKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIE 146
K Y E+ + V Q Y + V + +++ D+A +L G
Sbjct: 123 AKLQEEYEEKFDMTWVGLYGQNNTYAVVVREDTAKKYNLETCSDLAAVSDQLV--FGGNP 180
Query: 147 PGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSD 206
E + M F K + + RN V + S
Sbjct: 181 DYIERADGLPGMSAAYGFQFKEIK------DIDIGLKYQALRNGDIDVTNGYTTDAQISQ 234
Query: 207 LNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILN 264
++ L + S TVVR D L+K P + L+ + + E+ +
Sbjct: 235 EDVRALKD--DKSYQVNYFCSTVVRKDALEKYPKLKETLELMDGILTDQKMAELNYQVEE 292
Query: 265 NKQDRQFVGRTMLR 278
+D V L+
Sbjct: 293 EGRDEAEVAEEFLK 306
>gi|313624277|gb|EFR94324.1| glycine betaine-binding protein [Listeria innocua FSL J1-023]
Length = 300
Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats.
Identities = 33/167 (19%), Positives = 77/167 (46%), Gaps = 2/167 (1%)
Query: 132 AKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI 191
+++ I GI+ G + I + ++L +S A S +++ ++
Sbjct: 32 KDLGEQINYTITGIDAGAGIMLATQNAIKDYHLDDDNWQLQTSSTAAMTSTLQKAMKDKR 91
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFS 251
P V W PH + + ++ +L + + G E +++T+VR ++ P+ ++L N ++
Sbjct: 92 PIVVTGWTPHWMFTKFDLKFLDDPKNVFGNAE-NIHTIVRKGLKEEKPSAYKVLDNFFWT 150
Query: 252 VALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
+E+M + N+ D + + ++ +P+ + W GV DG +
Sbjct: 151 AEDMSEVMLEV-NDGVDPEEAAKKWIKNNPEKVAKWTDGVEKVDGDE 196
Score = 62.2 bits (149), Expect = 9e-08, Method: Composition-based stats.
Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 2/110 (1%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYW 83
++ W A+T + + L++ +GYK I+ + + + S+ D + W
Sbjct: 193 DGDEIKLTYVAWDSEIASTNVVAEALKQ-VGYKPTIQAMEIQPMWASVATDAADGMVAAW 251
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAK 133
P+ +G + + NL+GAK LAV + +K
Sbjct: 252 LPNTSGIYYK-DYKGKFEDLGPNLKGAKIGLAVPKYMKNINSIEDLKTSK 300
>gi|269120128|ref|YP_003308305.1| substrate-binding region of ABC-type glycine betaine transporter
[Sebaldella termitidis ATCC 33386]
gi|268614006|gb|ACZ08374.1| Substrate-binding region of ABC-type glycine betaine transport
system [Sebaldella termitidis ATCC 33386]
Length = 526
Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats.
Identities = 36/285 (12%), Positives = 82/285 (28%), Gaps = 29/285 (10%)
Query: 13 TFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--LLAVPVTFRS 70
T + ++ + +++ M S ++EE K + K L + +TF
Sbjct: 242 TAGTIFYTTLENKKKITVGSKSFSEQVILGNMVSDVIEENTDLKVDRKLRLGSTQITFTG 301
Query: 71 LKNKGIDIFMGYWYPSLEKFI----------------APYLEEGSIKLVAENLQGAKYML 114
+ N ID+++ Y +L + + + +KL+ Y +
Sbjct: 302 ITNGEIDVYVEYTGTALVNILQLPSNSDTDSTYNTVKDEFDKRYGLKLLKPLGFNNTYTI 361
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
A + K + IE + + + K +E
Sbjct: 362 ATTKEIKEKYNLNKISDLKAVSKDFTLSPTIE-FSNRPDGLPGFLKAYDMEFKAVNPVEG 420
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDY 234
+ + V ++ + + L + F V+R +
Sbjct: 421 ------ALRYSAIESGKSQVIDAFSTDGLLKAFELEVLED--DQHFFPPYYAVPVIRKEI 472
Query: 235 LDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
L+K P + + + + E+ + + V R L
Sbjct: 473 LEKYPQLEEAINKLAGQIDDKTMRELNYKVDKLGMEPDKVAREFL 517
>gi|261350153|ref|ZP_05975570.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Methanobrevibacter
smithii DSM 2374]
gi|288860939|gb|EFC93237.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Methanobrevibacter
smithii DSM 2374]
Length = 514
Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats.
Identities = 30/295 (10%), Positives = 73/295 (24%), Gaps = 31/295 (10%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
+ + + A + + + A +T+ T + ++E +
Sbjct: 224 LACIVIICILLGGYIAHEENPANTIHIASKAYTEEYITGELLKQVIEAHTDLNVELTSGV 283
Query: 62 -LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP---------------YLEEGSIKLVAE 105
+++ D++ Y + + Y + ++ +
Sbjct: 284 AGGSGTIHSGMESGDFDLYPEYTGVAWLSILHKNSTYNETQFNELNSYYEDNYNMTWYNK 343
Query: 106 NLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI-NNNKF 164
Y + V + K +G E + D I +
Sbjct: 344 YGFEDTYGIGVTKEVADKYNLTTYS--DLAKVSNQLSFGAESDFYAREDGYDAICDAYGL 401
Query: 165 SLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEA 224
+ + + S + V + + NI L + + +
Sbjct: 402 NF------KDTMDLDVSLKYDAVKQGQVDVIDIYTTDGRLENSNIVVLED--DKNFYPSY 453
Query: 225 SVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
TV+ L P ++ L + S M + +D V L
Sbjct: 454 YGGTVINQQTLIDHPEVADALDYLTGNVSTEDMKHMNYEVDVEGKDPSDVAHDFL 508
>gi|49085406|gb|AAT51275.1| PA3889 [synthetic construct]
Length = 312
Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats.
Identities = 44/306 (14%), Positives = 90/306 (29%), Gaps = 35/306 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M +++ + +A +R +T+ TA+T+ L++ GY +
Sbjct: 1 MNRLIRSLCLA--CAGLFAAGLAQAETLRIGGKTFTEQRILTAITAQFLQKR-GYDVTVT 57
Query: 61 LL-AVPVTFRSLKNKGIDIFMGYWYPSLEKF---------------IAPYLEEGSIKLVA 104
+ + ++ +DI Y SL + + E + +
Sbjct: 58 TGLGSTLARAAQESGQLDIVWEYTGSSLIVYNHIDEKLDAAASYRRVKQLDEAQGLVWLK 117
Query: 105 ENLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKKE-------LGAKIYGIEPGNEGNQRIL 156
Y LA+ + GI+S D+A+ E +
Sbjct: 118 PTRFNNTYALAMPEEQAEHLGIQSVSDLARVLAEQQEAEPGSTHLFAMDPEFAGRPDGLG 177
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
M + + + +N + L + D + L +
Sbjct: 178 PMSELYGLHFTRNDIRQMDAG----LVYTALKNRQVFLGLVYTTDGRLKDFKLRVLKDDK 233
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F + VVR + + + P + L I + A + + +Q Q V
Sbjct: 234 QYFPF--YNAAPVVRKEVMQRHPEFATLFDPIIERLDDATMQALNARVDIEQQTPQKVAA 291
Query: 275 TMLRTH 280
LR H
Sbjct: 292 DFLREH 297
>gi|15896103|ref|NP_349452.1| proline/glycine betaine ABC-type transport system, permease
component fused to periplasmic component [Clostridium
acetobutylicum ATCC 824]
gi|15025893|gb|AAK80792.1|AE007782_6 Proline/glycine betaine ABC-type transport system, permease
component fused to periplasmic component [Clostridium
acetobutylicum ATCC 824]
gi|325510257|gb|ADZ21893.1| Proline/glycine betaine ABC-type transport system, permease
component fused to periplasmic component [Clostridium
acetobutylicum EA 2018]
Length = 523
Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats.
Identities = 50/300 (16%), Positives = 93/300 (31%), Gaps = 34/300 (11%)
Query: 2 YKILAVCLFLTTFSISY--ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
YKI+A L + T ++ + + + + M + ++E YK
Sbjct: 229 YKIVAAILIVITIISGSIMFYNSQNKKVIVIGSKNFNEQLILGNMVASLIEHNTDYKVER 288
Query: 60 K--LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP----------------YLEEGSIK 101
K L V F +LK+ ID+++ Y L + + + +I+
Sbjct: 289 KLNLGGTSVAFNALKSGNIDMYVEYTGTGLVDIMKKPTISDEKKVYNDVKSFFDKNYNIE 348
Query: 102 LVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINN 161
+ Y LA+ + + ++ K I G L+ +
Sbjct: 349 WLKPIGFNNTYALAMKKNVASKY--NINTVSDLSKVSNNMILGS------TMEFLNRSDG 400
Query: 162 NKFSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISG 220
+ L S + N V ++ + N+ L +
Sbjct: 401 YPGLNNKYGLKFNSTKGLDGGLRYSSLNKNETQVTDAFLTDGLLQKFNLKVLKDDKNFF- 459
Query: 221 FGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
+VR D L K P + LL + K + + + + N QD Q V LR
Sbjct: 460 -PPYYAAPIVREDTLKKFPKLKPLLMKLANKITDSEMRALNYKVD-NGQDPQKVADEFLR 517
>gi|15599084|ref|NP_252578.1| binding protein component of ABC transporter [Pseudomonas
aeruginosa PAO1]
gi|218889830|ref|YP_002438694.1| putative binding protein component of ABC transporter [Pseudomonas
aeruginosa LESB58]
gi|9950070|gb|AAG07276.1|AE004806_3 probable binding protein component of ABC transporter [Pseudomonas
aeruginosa PAO1]
gi|218770053|emb|CAW25815.1| probable binding protein component of ABC transporter [Pseudomonas
aeruginosa LESB58]
Length = 311
Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats.
Identities = 44/306 (14%), Positives = 90/306 (29%), Gaps = 35/306 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M +++ + +A +R +T+ TA+T+ L++ GY +
Sbjct: 1 MNRLIRSLCLA--CAGLFAAGLAQAETLRIGGKTFTEQRILTAITAQFLQKR-GYDVTVT 57
Query: 61 LL-AVPVTFRSLKNKGIDIFMGYWYPSLEKF---------------IAPYLEEGSIKLVA 104
+ + ++ +DI Y SL + + E + +
Sbjct: 58 TGLGSTLARAAQESGQLDIVWEYTGSSLIVYNHIDEKLDAAASYRRVKQLDEAQGLVWLK 117
Query: 105 ENLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKKE-------LGAKIYGIEPGNEGNQRIL 156
Y LA+ + GI+S D+A+ E +
Sbjct: 118 PTRFNNTYALAMPEEQAEHLGIQSVSDLARVLAEQQEAEPGSTHLFAMDPEFAGRPDGLG 177
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
M + + + +N + L + D + L +
Sbjct: 178 PMSELYGLHFTRNDIRQMDAG----LVYTALKNRQVFLGLVYTTDGRLKDFKLRVLKDDK 233
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F + VVR + + + P + L I + A + + +Q Q V
Sbjct: 234 QYFPF--YNAAPVVRKEVMQRHPEFATLFDPIIERLDDATMQALNARVDIEQQTPQKVAA 291
Query: 275 TMLRTH 280
LR H
Sbjct: 292 DFLREH 297
>gi|315281744|ref|ZP_07870305.1| glycine betaine-binding protein [Listeria marthii FSL S4-120]
gi|313614612|gb|EFR88195.1| glycine betaine-binding protein [Listeria marthii FSL S4-120]
Length = 300
Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats.
Identities = 33/167 (19%), Positives = 76/167 (45%), Gaps = 2/167 (1%)
Query: 132 AKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI 191
+++ I GI+ G + I + ++L +S A S +++ ++
Sbjct: 32 KDLGEQINYTITGIDAGAGIMLATQNAIKDYHLDDDNWQLQTSSTAAMTSTLQKAMKDKR 91
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFS 251
P V W PH + + ++ +L + + G E +++T+VR + P+ ++L N ++
Sbjct: 92 PIVVTGWTPHWMFTKFDLKFLDDPKNVFGNAE-NIHTIVRKGLKEDKPSAYQVLDNFFWT 150
Query: 252 VALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
+E+M + N+ D + + ++ +P+ + W GV DG +
Sbjct: 151 AEDMSEVMLEV-NDGVDPEEAAKKWIKNNPEKVAKWTDGVEKVDGDE 196
Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 2/110 (1%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYW 83
++ W A+T + + L++ +GYK I+ + + + S+ D + W
Sbjct: 193 DGDEIKLTYVAWDSEIASTNVVAEALKQ-VGYKPTIQAMEIQPMWASVATDAADGMVAAW 251
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAK 133
P+ +G + + NL+GAK LAV + +K
Sbjct: 252 LPNTSGIYYK-DYKGKFEDLGPNLKGAKIGLAVPKYMSNINSIEDLKTSK 300
>gi|315302496|ref|ZP_07873339.1| glycine betaine-binding protein [Listeria ivanovii FSL F6-596]
gi|313629134|gb|EFR97424.1| glycine betaine-binding protein [Listeria ivanovii FSL F6-596]
Length = 226
Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats.
Identities = 34/167 (20%), Positives = 76/167 (45%), Gaps = 2/167 (1%)
Query: 132 AKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI 191
+++ I GI+ G + I + ++L +S A S +++ ++
Sbjct: 20 KDLGEQINYTITGIDAGAGIMLATQNAIKDYHLDDDNWQLQTSSTAAMTSTLQKAMKDKR 79
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFS 251
P V W PH + + ++ +L + + G E +++T+VR + P+ ++L N ++
Sbjct: 80 PIVVTGWTPHWMFTKFDLKFLDDPKNVYGNAE-NIHTIVRKGLKEDKPSAYKVLDNFFWT 138
Query: 252 VALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
+E+M + N+ D + + ++ +PD + W GV DG +
Sbjct: 139 AEDMSEVMLEV-NDGVDPEEAAKKWVKNNPDKVAKWTDGVKKVDGDE 184
>gi|153815887|ref|ZP_01968555.1| hypothetical protein RUMTOR_02132 [Ruminococcus torques ATCC 27756]
gi|317500643|ref|ZP_07958862.1| hypothetical protein HMPREF1026_00805 [Lachnospiraceae bacterium
8_1_57FAA]
gi|145846706|gb|EDK23624.1| hypothetical protein RUMTOR_02132 [Ruminococcus torques ATCC 27756]
gi|316897961|gb|EFV20013.1| hypothetical protein HMPREF1026_00805 [Lachnospiraceae bacterium
8_1_57FAA]
Length = 311
Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats.
Identities = 51/314 (16%), Positives = 91/314 (28%), Gaps = 46/314 (14%)
Query: 1 MYKILAV----CLFLTTFSISYARDADSCT---------PVRFADTGWTDIAATTAMTSV 47
+ KI A+ L L+ + D PV+ A T+ M
Sbjct: 3 LKKITALFLTGALILSMAGCAGNGSKDKKEGSAGNEAQEPVKIATKPMTEQFILGEMLKK 62
Query: 48 ILEEILGYKTNIKL---LAVPVTFRSLKNKGIDIFMGYWYPSL----------------- 87
++EE GY+ + +++ D++ Y
Sbjct: 63 LIEEKAGYEVELTKGIGGGTSNIQPAMEKGEFDLYPEYTSSGWILVLGHKAGEVSDDKML 122
Query: 88 EKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIE 146
K Y E+ + V Q Y + V + +++ D+A +L G
Sbjct: 123 AKLQEEYEEKFDMTWVGLYGQNNTYAVVVREDTAKKYNLETCSDLAAVSDQLV--FGGNP 180
Query: 147 PGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSD 206
E + M F K + + RN V + S
Sbjct: 181 DYIERADGLPGMSAAYGFQFKEIK------DIDIGLKYQALRNGDIDVTNGYTTDAQISQ 234
Query: 207 LNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILN 264
++ L + S TVVR D L+K P + L+ + + E+ +
Sbjct: 235 DDVRALKD--DKSYQVNYFCSTVVRKDALEKYPKLKETLELMDGILTDQKMAELNYQVEE 292
Query: 265 NKQDRQFVGRTMLR 278
+D V L+
Sbjct: 293 EGRDEAEVAEEFLK 306
>gi|89098811|ref|ZP_01171692.1| hypothetical protein B14911_05109 [Bacillus sp. NRRL B-14911]
gi|89086487|gb|EAR65607.1| hypothetical protein B14911_05109 [Bacillus sp. NRRL B-14911]
Length = 505
Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats.
Identities = 34/295 (11%), Positives = 84/295 (28%), Gaps = 30/295 (10%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL--A 63
A+ L + + A ++ M +++EE ++
Sbjct: 215 AIALAAIVIMVLPFVSGKGEKDLVIAGKLGSEPEILINMYKLLIEEETDMSVELQPGLGK 274
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAP-----------------YLEEGSIKLVAEN 106
F +L++ IDI+ + ++ +F+ EE ++++
Sbjct: 275 TSFVFNALRSGDIDIYPEFTGTAISEFLKETAVSTDRQEVYEQARDGMSEEFELEMLEPM 334
Query: 107 LQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSL 166
Y LAV + A K ++ + +E ++ +
Sbjct: 335 DYNNTYALAVPEELAAQYGLETISDVKAVQQNINPGFTLE-FSDREDGYRGIQKLYGIEF 393
Query: 167 KGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV 226
+ +E + ++ N+ L + +
Sbjct: 394 PNVKTMEPKLR------YSAVETGDINMVDAYSTDSELEAYNLKVLEDDKNLF--PPYQG 445
Query: 227 YTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+++ + LD P I+ L + K + EM + + + R L+
Sbjct: 446 APLLKKETLDDHPEIADALNKLAGKITDDQMREMNYKVNVDGMSAEDTAREFLKN 500
>gi|330810512|ref|YP_004354974.1| glycine betaine ABC transporter periplasmic protein [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|327378620|gb|AEA69970.1| Glycine betaine ABC transporter, periplasmic component [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 299
Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats.
Identities = 58/287 (20%), Positives = 116/287 (40%), Gaps = 9/287 (3%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+ L + S A+ TP+R W+D + L + L + L
Sbjct: 7 KTCIGWLAGLAMAAGSLTAHAEEPTPIRIGWVNWSDTEIAVKLADTALRDHLKQPVKLVL 66
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ + F++L N ID+ W PS K ++ ++ + +G + +AV
Sbjct: 67 ADIGIQFQALANGNIDLIPMVWLPSTHKAFYDKYQD-KLEDLGVLYEG-RIGMAVPTSIP 124
Query: 122 ALGIKSYQDIAKY--KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
I S +D+ K +++LG KI E GN + I K G++++ +SE
Sbjct: 125 TSEIASVEDLNKPEVREKLGGKILTSEVGNGQYKLTEKAIKEYKLD--GYKMVASSESGM 182
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
S++ R+ + + ++ +W PH + + + YL ++I G G ++ V R + + P
Sbjct: 183 LSELDRNIKRDKWSLINAWSPHWMFAKWPLRYLDDPKQIFG-GAEQIHAVARKGFSAEHP 241
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKN 286
+++R N K A ++M ++ V + +
Sbjct: 242 DVARFFANFKIPKADLEKLMSTARDS--SADKVVAEYYAANKPRFEA 286
>gi|323488199|ref|ZP_08093450.1| Substrate-binding region of ABC-type glycine betaine transport
system [Planococcus donghaensis MPA1U2]
gi|323398203|gb|EGA90998.1| Substrate-binding region of ABC-type glycine betaine transport
system [Planococcus donghaensis MPA1U2]
Length = 300
Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats.
Identities = 45/299 (15%), Positives = 91/299 (30%), Gaps = 32/299 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK- 60
K+L + L + + ++ P+ WT+ + +E Y K
Sbjct: 3 KKLLGMTLIASAALYGCSSGEEATEPLVIGGKPWTEQYILPYILGEYIEAKSDYTVEYKD 62
Query: 61 -LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP------------------YLEEGSIK 101
L V + +L+ ID+++ Y L+ + Y EE
Sbjct: 63 GLGEVAILTPALEKGDIDMYVEYTGTGLKDVLKRDSEPGQTSEEVLQAVREGYEEELGAT 122
Query: 102 LVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEG-NQRILDMIN 160
+ Y LA + L K+Y ++A+ + G E D+
Sbjct: 123 WLEPLGFENGYTLAYSKES-GLDAKTYSELAELSRSQDVSFGGPHSFYERKGDGYEDLTA 181
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISG 220
F+ + S + +N V ++ +
Sbjct: 182 TYNFNFSATESFDPSI------MYEALKNGDVNVIPAFTTDSRIDLFELTTTKDDLNFF- 234
Query: 221 FGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ VVR + L++ P++ +L + + S M + +K+ + V R L
Sbjct: 235 -PKYDAVPVVRMETLEEYPDLEEVLNELGGQISAEEMLAMNSKVDVDKEQPEDVAREFL 292
>gi|116872418|ref|YP_849199.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding [Listeria welshimeri serovar
6b str. SLCC5334]
gi|116741296|emb|CAK20418.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding [Listeria welshimeri serovar
6b str. SLCC5334]
Length = 300
Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats.
Identities = 34/167 (20%), Positives = 77/167 (46%), Gaps = 2/167 (1%)
Query: 132 AKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI 191
+++ I GI+ G + I + K ++L +S A S +++ ++
Sbjct: 32 KDLGEQINYTITGIDAGAGIMLATQNAIKDYKLDDDNWQLQTSSTAAMTSTLQKAMKDKR 91
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFS 251
P V W PH + + ++ +L + + G E +++T+VR + P+ ++L N ++
Sbjct: 92 PIVVTGWTPHWMFTKFDLKFLDDPKNVYGNAE-NIHTIVRKGLKEDKPSAYQVLDNFFWT 150
Query: 252 VALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
+E+M + N+ D + + ++ +P+ + W GV DG +
Sbjct: 151 AEDMSEVMLQV-NDGVDPEEAAKKWIKNNPEKVAKWTDGVKKVDGDE 196
Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats.
Identities = 20/97 (20%), Positives = 39/97 (40%), Gaps = 2/97 (2%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYW 83
++ W A+T + + L+ +GY+ I+ + + + S+ D + W
Sbjct: 193 DGDEIKLTYVAWDSEIASTNVVAEALKS-VGYEPTIQAMEIQPMWASVATDAADGMVAAW 251
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
P+ +G + + NL+GAK LAV
Sbjct: 252 LPNTSGVYFK-DYKGKFEDLGPNLKGAKIGLAVPKYM 287
>gi|228985376|ref|ZP_04145535.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus
thuringiensis serovar tochigiensis BGSC 4Y1]
gi|228774329|gb|EEM22736.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus
thuringiensis serovar tochigiensis BGSC 4Y1]
Length = 503
Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats.
Identities = 32/301 (10%), Positives = 84/301 (27%), Gaps = 31/301 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+++ + S + A ++ M ++E+ +K
Sbjct: 209 RRVILTICIVCIMVASPFLWNTEKKDIVIAGKLGSEPEILIQMYKQLIEQDTDLHVQLKP 268
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL-----------------EEGSIKL 102
F +LK+ +DI+ + +L F+ ++ S+ +
Sbjct: 269 GLGKTSFVFEALKSGEVDIYPEFSGTALSTFVKEEPKSTNRDEVYEQARVGMEKKYSMVM 328
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
+ Y LA+ S + + +E + M
Sbjct: 329 LKPMEYNNTYALAMPKKIADQKNISTISDLGNIAQDAKVGFTLE-FADREDGYKGMQKLY 387
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
+ + +E + V ++ + L + +
Sbjct: 388 NYKFSNVKTMEPKLR------YSAIESGDVNVIDAYSTDSELEQYGLKVLKDDKGLF--P 439
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML-RT 279
++R + L K P + ++L + K + +M + N + + V + L +
Sbjct: 440 PYQGAPLLRKETLQKYPELEKVLNKLSGKITDEEMRKMNYEVNVNGKSSEGVAKQFLQKE 499
Query: 280 H 280
+
Sbjct: 500 N 500
>gi|163737615|ref|ZP_02145032.1| ABC transporter binding protein [Phaeobacter gallaeciensis BS107]
gi|163740811|ref|ZP_02148204.1| ABC transporter binding protein [Phaeobacter gallaeciensis 2.10]
gi|161385802|gb|EDQ10178.1| ABC transporter binding protein [Phaeobacter gallaeciensis 2.10]
gi|161389141|gb|EDQ13493.1| ABC transporter binding protein [Phaeobacter gallaeciensis BS107]
Length = 315
Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats.
Identities = 38/287 (13%), Positives = 76/287 (26%), Gaps = 24/287 (8%)
Query: 26 TPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYP 85
P+R W+ T + IL+E GY F LK + + M W
Sbjct: 29 DPIRLTLHDWSGQLINTKIMGRILQEA-GYNVEYVQADYIAQFAGLKTGDLHLAMEIWET 87
Query: 86 SLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA--LGIKSYQDIAKYKKELGAKIY 143
+ + + G + E A G+ +Q + E
Sbjct: 88 TGREALDEATASGKVVNAGETGLMAIEEWWYPSYMKERCPGLPDWQALKDCADEFSTAET 147
Query: 144 ---GIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEP 200
G G D L + ++ A F+++ + P V + P
Sbjct: 148 SPNGRYVGGPVTWGGFDEERVEALELDFEVVHAGTDAALFAELESAYQRQDPIVLWIYVP 207
Query: 201 HPINSDLNIHYLPGGEE------------------ISGFGEASVYTVVRSDYLDKCPNIS 242
H + ++ G ++ + +K P
Sbjct: 208 HWAPAKYEGEFVEFPPYSSECYSDPSVGVNPDLAYDCGKPRGPIWKAAWAGLPEKWPGAY 267
Query: 243 RLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+++ S + M+ + D V + + + W+
Sbjct: 268 EIVQAYNISNDEMSAMVGKADLDGVDIDAVVSDWMTANKERWSGWIA 314
>gi|4760365|gb|AAD29106.1|AF039835_3 putative glycine betaine binding protein GbuC [Listeria
monocytogenes]
Length = 300
Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats.
Identities = 34/167 (20%), Positives = 76/167 (45%), Gaps = 2/167 (1%)
Query: 132 AKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI 191
+++ I GI+ G + I + ++L +S A S +++ ++
Sbjct: 32 KDLGEQINYTITGIDAGAGIMLATQNAIKDYHLDDDNWQLQTSSTAAMTSTLQKAMKDKR 91
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFS 251
P V W PH + + ++ +L + + G E +++T+VR + P+ ++L N ++
Sbjct: 92 PIVVTGWTPHWMFTKFDLKFLDDPKNVYGNAE-NIHTIVRKGLKEDKPSAYQVLDNFFWT 150
Query: 252 VALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
+E+M + N+ D + + ++ +PD + W GV DG +
Sbjct: 151 AEDMSEVMLEV-NDGVDPEEAAKKWIKNNPDKVAKWTDGVEKVDGDE 196
Score = 60.6 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/97 (21%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYW 83
++ W A+T + + L++ +GYK I+ + + + S+ D + W
Sbjct: 193 DGDEIKLTYVAWDSEIASTNVVAEALKQ-VGYKPTIQAMEIQPMWASVATDAADGMVAAW 251
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
P+ +G+ + + NL+GAK LAV
Sbjct: 252 LPNTSGIYYK-DYKGNFEDLGPNLKGAKIGLAVPKYM 287
>gi|16803056|ref|NP_464541.1| hypothetical protein lmo1016 [Listeria monocytogenes EGD-e]
gi|224500738|ref|ZP_03669087.1| hypothetical protein LmonF1_14116 [Listeria monocytogenes Finland
1988]
gi|224502669|ref|ZP_03670976.1| hypothetical protein LmonFR_09139 [Listeria monocytogenes FSL
R2-561]
gi|254832237|ref|ZP_05236892.1| hypothetical protein Lmon1_12864 [Listeria monocytogenes 10403S]
gi|254898810|ref|ZP_05258734.1| hypothetical protein LmonJ_03315 [Listeria monocytogenes J0161]
gi|254911701|ref|ZP_05261713.1| gbuC [Listeria monocytogenes J2818]
gi|254936027|ref|ZP_05267724.1| gbuC [Listeria monocytogenes F6900]
gi|16410418|emb|CAC99094.1| gbuC [Listeria monocytogenes EGD-e]
gi|258608615|gb|EEW21223.1| gbuC [Listeria monocytogenes F6900]
gi|293589650|gb|EFF97984.1| gbuC [Listeria monocytogenes J2818]
Length = 300
Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats.
Identities = 34/167 (20%), Positives = 76/167 (45%), Gaps = 2/167 (1%)
Query: 132 AKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI 191
+++ I GI+ G + I + ++L +S A S +++ ++
Sbjct: 32 KDLGEQINYTITGIDAGAGIMLATQNAIKDYHLDDDNWQLQTSSTAAMTSTLQKAMKDKR 91
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFS 251
P V W PH + + ++ +L + + G E +++T+VR + P+ ++L N ++
Sbjct: 92 PIVVTGWTPHWMFTKFDLKFLDDPKNVYGNAE-NIHTIVRKGLKEDKPSAYQVLDNFFWT 150
Query: 252 VALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
+E+M + N+ D + + ++ +PD + W GV DG +
Sbjct: 151 AEDMSEVMLEV-NDGVDPEEAAKKWIKNNPDKVAKWTDGVEKVDGDE 196
Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYW 83
++ W A+T + + L++ +GYK I+ + + + S+ D + W
Sbjct: 193 DGDEIKLTYVAWDSEIASTNVVAEALKQ-VGYKPTIQAMEIQPMWASVATDAADGMVAAW 251
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
P+ +G + + NL+GAK LAV
Sbjct: 252 LPNTSGIYYK-DYKGKFEDLGPNLKGAKIGLAVPKYM 287
>gi|255026435|ref|ZP_05298421.1| hypothetical protein LmonocytFSL_09025 [Listeria monocytogenes FSL
J2-003]
Length = 288
Score = 143 bits (359), Expect = 4e-32, Method: Composition-based stats.
Identities = 34/167 (20%), Positives = 76/167 (45%), Gaps = 2/167 (1%)
Query: 132 AKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI 191
+++ I GI+ G + I + ++L +S A S +++ ++
Sbjct: 20 KDLGEQINYTITGIDAGAGIMLATQNAIKDYHLDDDNWQLQTSSTAAMTSTLQKAMKDKR 79
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFS 251
P V W PH + + ++ +L + + G E +++T+VR + P+ ++L N ++
Sbjct: 80 PIVVTGWTPHWMFTKFDLKFLDDPKNVYGNAE-NIHTIVRKGLKEDKPSAYQVLDNFFWT 138
Query: 252 VALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
+E+M + N+ D + + ++ +PD + W GV DG +
Sbjct: 139 AEDMSEVMLEV-NDGVDPEEAAKKWIKNNPDKVAKWTDGVEKVDGDE 184
Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYW 83
++ W A+T + + L++ +GYK I+ + + + S+ D + W
Sbjct: 181 DGDEIKLTYVAWDSEIASTNVVAEALKQ-VGYKPTIQAMEIQPMWASVATDAADGMVAAW 239
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
P+ +G + + NL+GAK LAV
Sbjct: 240 LPNTSGIYYK-DYKGKFEDLGPNLKGAKIGLAVPKYM 275
>gi|228939437|ref|ZP_04102025.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus
thuringiensis serovar berliner ATCC 10792]
gi|228972291|ref|ZP_04132903.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus
thuringiensis serovar thuringiensis str. T01001]
gi|228978905|ref|ZP_04139271.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus
thuringiensis Bt407]
gi|228780779|gb|EEM28991.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus
thuringiensis Bt407]
gi|228787436|gb|EEM35403.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus
thuringiensis serovar thuringiensis str. T01001]
gi|228820137|gb|EEM66174.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus
thuringiensis serovar berliner ATCC 10792]
gi|326939985|gb|AEA15881.1| glycine betaine transport system permease protein/glycine
betaine-binding protein [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 503
Score = 143 bits (359), Expect = 4e-32, Method: Composition-based stats.
Identities = 33/300 (11%), Positives = 86/300 (28%), Gaps = 32/300 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
++ + S + + A ++ M ++E+ +K
Sbjct: 209 KHVILTICIVVVMIASPFLWSTEKKDIVIAGKLGSEPEILIQMYKQLIEQDTDLNVQLKP 268
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL-----------------EEGSIKL 102
F +LK+ +DI+ + +L F+ ++ ++ +
Sbjct: 269 GLGKTAFVFEALKSGEVDIYPEFSGTALSTFVKEEPKSTNRDEVYDQARIGMEKKYNMVM 328
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
+ Y LA+ K+ I+ G D +
Sbjct: 329 LKPMEYNNTYALAMPKKIADQ--KNINTISDLGNVAQEAKVG------FTLEFADRGDGY 380
Query: 163 KFSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
K K + ++ ++ ++ V ++ + L + +
Sbjct: 381 KGMQKLYNYKFSNVKTMEPKLRYSAIQSGDVNVIDAYSTDSELEQYGLKVLKDDKGLF-- 438
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++R + L K P + ++L + K + +M + N + + V + L
Sbjct: 439 PPYQGAPLLRKETLQKYPELEKVLNKLSGKITDGEMRKMNYEVNVNGKSSEEVAKQFLEK 498
>gi|239979898|ref|ZP_04702422.1| glycine betaine-binding lipoprotein [Streptomyces albus J1074]
gi|291451755|ref|ZP_06591145.1| glycine betaine-binding lipoprotein [Streptomyces albus J1074]
gi|291354704|gb|EFE81606.1| glycine betaine-binding lipoprotein [Streptomyces albus J1074]
Length = 325
Score = 143 bits (359), Expect = 4e-32, Method: Composition-based stats.
Identities = 43/306 (14%), Positives = 99/306 (32%), Gaps = 24/306 (7%)
Query: 6 AVCLFLTTFSIS-------YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
L + + +A V + W A A+ +LE LGY+ +
Sbjct: 20 GALLAVAGCGAADMTQQASPYANAGDGKSVTLSLQSWVGAQANVAVAQYLLEHELGYRVD 79
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ + +L +D + W E+ ++ +I + V
Sbjct: 80 TVQIDEVPAWDALSQGRVDAILEDWG-HPEEEKRYVDDKKTITAAGDVGVTGHIGWFVPT 138
Query: 119 VGFA--LGIKSYQDIAKYKKELGAKIYGIEPG---NEGNQRILDMINNNKFSLKGFRLIE 173
+ +++++ KY +L G + + D L +
Sbjct: 139 YFAKKHPDVTNWKNLNKYADQLRTPESGGKGQLMDGSPSYVTNDKALVKNLDLDYQVVFA 198
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE-----------ISGFG 222
SE A +QI++ + P + ++P + + + + + +
Sbjct: 199 GSEAAQITQIKQFAKEKKPFLTYWYQPQWLFEKVPMTEVELPKYEEGCDADPDKVACAYP 258
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPD 282
E + + +D+ + + LKN +++ +N++ I + K D Q + +
Sbjct: 259 ETPLQKYLNTDFAENGGEAAEFLKNFEWTTEDQNQVSLWIADQKMDPQKAAEKWAKANES 318
Query: 283 LLKNWL 288
K WL
Sbjct: 319 TWKKWL 324
>gi|297528727|ref|YP_003670002.1| substrate-binding region of ABC-type glycine betaine transporter
[Geobacillus sp. C56-T3]
gi|297251979|gb|ADI25425.1| Substrate-binding region of ABC-type glycine betaine transport
system [Geobacillus sp. C56-T3]
Length = 300
Score = 143 bits (359), Expect = 4e-32, Method: Composition-based stats.
Identities = 40/301 (13%), Positives = 94/301 (31%), Gaps = 35/301 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+ +LAV L + +D+ + + +T+ T + + ++ +K
Sbjct: 6 IRSLLAVGLVFGL--AACNGTSDAKGKIVISGKKFTEQVILTHLLTEYVKAHTDLDVEVK 63
Query: 61 --LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP------------------YLEEGSI 100
L + ++++N +D+++ Y + Y E+ +I
Sbjct: 64 DSLGGAFMLQQAIENGDVDMYVEYTGTGYLNILKQPYDPKKTPEQIYNVTKKLYKEKYNI 123
Query: 101 KLVAENLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI 159
+ Y LA+ G+K+Y D+AK+ E + ++
Sbjct: 124 AWLKPLGFNNTYALALRKDLAEKLGVKTYSDLAKH--SSSLTFGSDAEFFERSDGYDGLV 181
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
+ F K I+ +N V ++ ++ L +
Sbjct: 182 DTYGFQFKKKVTIDPDLQ------YEAAKNGEIDVITAYTTDARIKKYDLVVLKD--DKH 233
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
F ++R + LD P + L + + E+ + + + V L
Sbjct: 234 YFPPYHAVPIIRQEVLDANPGLEEKLNKLANILTDEKMMELNGQVNLEGKRPREVAIDFL 293
Query: 278 R 278
+
Sbjct: 294 K 294
>gi|254827961|ref|ZP_05232648.1| gbuC [Listeria monocytogenes FSL N3-165]
gi|258600343|gb|EEW13668.1| gbuC [Listeria monocytogenes FSL N3-165]
Length = 300
Score = 143 bits (359), Expect = 4e-32, Method: Composition-based stats.
Identities = 34/167 (20%), Positives = 75/167 (44%), Gaps = 2/167 (1%)
Query: 132 AKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI 191
+++ I GI+ G + I + ++L +S A S +++ ++
Sbjct: 32 KDLGEQINYTITGIDAGAGIMLATQNAIKDYHLDDDNWQLQTSSTAAMTSTLQKAMKDKR 91
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFS 251
P V W PH + + ++ +L + + G E +++T+VR P+ ++L N ++
Sbjct: 92 PIVVTGWTPHWMFTKFDLKFLDDPKNVYGNAE-NIHTIVRKGLKKDKPSAYQVLDNFFWT 150
Query: 252 VALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
+E+M + N+ D + + ++ +PD + W GV DG +
Sbjct: 151 AEDMSEVMLEV-NDGVDPEEAAKKWIKNNPDKVAKWTDGVEKVDGDE 196
Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYW 83
++ W A+T + + L++ +GYK I+ + + + S+ D + W
Sbjct: 193 DGDEIKLTYVAWDSEIASTNVVAEALKQ-VGYKPTIQAMEIQPMWASVATDAADGMVAAW 251
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
P+ +G + + NL+GAK LAV
Sbjct: 252 LPNTSGIYYK-DYKGKFEDLGPNLKGAKIGLAVPKYM 287
>gi|294783028|ref|ZP_06748352.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Fusobacterium sp.
1_1_41FAA]
gi|294479906|gb|EFG27683.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Fusobacterium sp.
1_1_41FAA]
Length = 513
Score = 143 bits (359), Expect = 5e-32, Method: Composition-based stats.
Identities = 38/283 (13%), Positives = 86/283 (30%), Gaps = 31/283 (10%)
Query: 18 YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL---LAVPVTFRSLKNK 74
++ ++ + A T+ M + ++E+ K NI ++
Sbjct: 234 FSLNSKKDKAINIATKPMTEGYILGQMLTELIEQDTDLKVNITNGVGGGTSNIHPAIVKG 293
Query: 75 GIDIFMGYWYPSLEKFIAP---------------YLEEGSIKLVAENLQGAKYMLAVNDV 119
D++ Y S E + Y E+ +++ V Y LAVN
Sbjct: 294 EFDLYPEYTGTSWEAVLKKEGSYDESQFDELQKEYKEKYNLEYVNLYGFNNTYGLAVNKD 353
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ + + I+G E E ++ K
Sbjct: 354 IAEKY--NLKTYSDLAAVSNNLIFGAEYDFFEREDGYKELQKIYNVDFKKK------IDM 405
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+ ++ V + + + ++ L ++ + TVVRS+ L K
Sbjct: 406 DIGLKYQAMKDKKIDVMIIFTTDGQLAISDVVVLEDDKK--MYPSYRAGTVVRSEILSKY 463
Query: 239 PNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
P + +L+ + ++ + + + + V R L+
Sbjct: 464 PELKPVLEKLNNILDDKTMADLNYQVESEGKKPEDVAREYLQE 506
>gi|107103405|ref|ZP_01367323.1| hypothetical protein PaerPA_01004475 [Pseudomonas aeruginosa PACS2]
gi|254236788|ref|ZP_04930111.1| hypothetical protein PACG_02801 [Pseudomonas aeruginosa C3719]
gi|126168719|gb|EAZ54230.1| hypothetical protein PACG_02801 [Pseudomonas aeruginosa C3719]
Length = 311
Score = 143 bits (359), Expect = 5e-32, Method: Composition-based stats.
Identities = 44/306 (14%), Positives = 90/306 (29%), Gaps = 35/306 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M +++ + +A +R +T+ TA+T+ L++ GY +
Sbjct: 1 MNRLIRSLCLA--CAGLFAAGLAQAETLRIGGKTFTEQRILTAITAQFLQKR-GYDVTVT 57
Query: 61 LL-AVPVTFRSLKNKGIDIFMGYWYPSLEKF---------------IAPYLEEGSIKLVA 104
+ + ++ +DI Y SL + + E + +
Sbjct: 58 TGLGSTLARAAQESGQLDIVWEYTGSSLIVYNHIDEKLDAAASYRRVKQLDEAQGLVWLK 117
Query: 105 ENLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKKE-------LGAKIYGIEPGNEGNQRIL 156
Y LA+ + GI+S D+A+ E +
Sbjct: 118 PTRFNNTYALAMPEEQAERLGIQSVSDLARVLAEQQEAEPGSTHLFAMDPEFAGRPDGLG 177
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
M + + + +N + L + D + L +
Sbjct: 178 PMSELYGLHFTRNDIRQMDAG----LVYTALKNRQVFLGLVYTTDGRLKDFKLRVLKDDK 233
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F + VVR + + + P + L I + A + + +Q Q V
Sbjct: 234 QYFPF--YNAAPVVRKEVMQRHPEFATLFDPIIERLDDATMQALNARVDIEQQTPQKVAA 291
Query: 275 TMLRTH 280
LR H
Sbjct: 292 DFLREH 297
>gi|288869881|ref|ZP_06112155.2| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Clostridium hathewayi
DSM 13479]
gi|288869254|gb|EFD01553.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Clostridium hathewayi
DSM 13479]
Length = 311
Score = 143 bits (359), Expect = 5e-32, Method: Composition-based stats.
Identities = 43/286 (15%), Positives = 79/286 (27%), Gaps = 31/286 (10%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL---LAVPVTFRSL 71
++ A T+ T + ++E LG K I +L
Sbjct: 31 LSLGGCAKKEQGTIKIASKPMTEQYVLTEIIGQLIEHDLGVKVEITKGVGGGTTNIQPAL 90
Query: 72 KNKGIDIFMGYWYPSLEKFIAPY---------------LEEGSIKLVAENLQGAKYMLAV 116
D++ Y + EE + Y+LAV
Sbjct: 91 LKGDFDLYPEYTGTGWLTVLKKEQENDPDVLYANLQKGYEEMGLHWTGLYGFQNSYVLAV 150
Query: 117 NDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
+K++ D+A +L G E + + + K +
Sbjct: 151 RKEAADQYSLKTFSDLAAASNQLV--FGGNPDYMEREDGFNYLASAYNMNFKDVK----- 203
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYL 235
+ + V ++ S ++ L + F TVVR D L
Sbjct: 204 -DIDIALKYTAMADKQIDVTNAYTTDAQLSVADVSLLED--DQHIFATYYGATVVRQDTL 260
Query: 236 DKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
K P +S L+ + S M + ++D + V + L
Sbjct: 261 KKYPKLSETLEKLTGQISDDEMRAMNYAVEVEQKDEKEVAKDFLTE 306
>gi|114769446|ref|ZP_01447072.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [alpha proteobacterium
HTCC2255]
gi|114550363|gb|EAU53244.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [alpha proteobacterium
HTCC2255]
Length = 313
Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats.
Identities = 38/312 (12%), Positives = 91/312 (29%), Gaps = 26/312 (8%)
Query: 1 MYKILAVCLFLTTFSISYARDA-DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M K+ ++ + A DS P+ W+ + I E +G
Sbjct: 1 MKKLTLTLAASAMMAMPFTASAKDSSDPIVIPIHNWSSQIVMSHAVGQIFES-MGNAVEF 59
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ S++ + + + W + LE+G + V ++ +
Sbjct: 60 VTTDSQAVYESVRMGDVALELEVWEGAFGASFRAALEKGGLHDVGDHNAVTREDWWYPMW 119
Query: 120 G--FALGIKSYQDIAKYKKELGAKIYGIEPGN---EGNQRILDMINNNKFSLKGFRLIEA 174
G+ S++ + G + + + + +
Sbjct: 120 TKDACPGLPSWEALNACADLFKTAETGDKGRYLDGPVDWLKHGKERVDALGMDFVVVNAG 179
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG------------------- 215
S A +++I +++ P V +W P+ + ++
Sbjct: 180 SAAALWAEIGAAEKDKRPVVVFNWTPNFAEAVWPGEFVEFPQWVDGCDKDPSVGPNPNAL 239
Query: 216 EEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRT 275
+ + + DK P+ L+ I F+ EM K + ++ + +
Sbjct: 240 YDCGNPAKGYLKKAAWDGMKDKWPDAYSTLEKISFTNPQIAEMAKFVDIDEMEPEEAAAE 299
Query: 276 MLRTHPDLLKNW 287
L + + K W
Sbjct: 300 WLANNESVWKAW 311
>gi|284801348|ref|YP_003413213.1| hypothetical protein LM5578_1098 [Listeria monocytogenes 08-5578]
gi|284994490|ref|YP_003416258.1| hypothetical protein LM5923_1052 [Listeria monocytogenes 08-5923]
gi|284056910|gb|ADB67851.1| hypothetical protein LM5578_1098 [Listeria monocytogenes 08-5578]
gi|284059957|gb|ADB70896.1| hypothetical protein LM5923_1052 [Listeria monocytogenes 08-5923]
Length = 300
Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats.
Identities = 34/167 (20%), Positives = 76/167 (45%), Gaps = 2/167 (1%)
Query: 132 AKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI 191
+++ I GI+ G + I + ++L +S A S +++ ++
Sbjct: 32 KDLGEQINYTITGIDAGAGIMIATQNAIKDYHLDDDNWQLQTSSTAAMTSTLQKAMKDKR 91
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFS 251
P V W PH + + ++ +L + + G E +++T+VR + P+ ++L N ++
Sbjct: 92 PIVVTGWTPHWMFTKFDLKFLDDPKNVYGNAE-NIHTIVRKGLKEDKPSAYQVLDNFFWT 150
Query: 252 VALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
+E+M + N+ D + + ++ +PD + W GV DG +
Sbjct: 151 AEDMSEVMLEV-NDGVDPEEAAKKWIKNNPDKVAKWTDGVEKVDGDE 196
Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYW 83
++ W A+T + + L++ +GYK I+ + + + S+ D + W
Sbjct: 193 DGDEIKLTYVAWDSEIASTNVVAEALKQ-VGYKPTIQAMEIQPMWASVATDAADGMVAAW 251
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
P+ +G + + NL+GAK LAV
Sbjct: 252 LPNTSGIYYK-DYKGKFEDLGPNLKGAKIGLAVPKYM 287
>gi|254823711|ref|ZP_05228712.1| glycine betaine/L-proline ABC transporter [Listeria monocytogenes
FSL J1-194]
gi|254852512|ref|ZP_05241860.1| glycine betaine/L-proline ABC transporter [Listeria monocytogenes
FSL R2-503]
gi|254992280|ref|ZP_05274470.1| glycine betaine ABC transporter (glycine betaine-binding protein)
[Listeria monocytogenes FSL J2-064]
gi|255520604|ref|ZP_05387841.1| glycine betaine ABC transporter (glycine betaine-binding protein)
[Listeria monocytogenes FSL J1-175]
gi|300764226|ref|ZP_07074221.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Listeria
monocytogenes FSL N1-017]
gi|258605820|gb|EEW18428.1| glycine betaine/L-proline ABC transporter [Listeria monocytogenes
FSL R2-503]
gi|293592933|gb|EFG00694.1| glycine betaine/L-proline ABC transporter [Listeria monocytogenes
FSL J1-194]
gi|300515216|gb|EFK42268.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Listeria
monocytogenes FSL N1-017]
Length = 300
Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats.
Identities = 33/167 (19%), Positives = 76/167 (45%), Gaps = 2/167 (1%)
Query: 132 AKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI 191
+++ I GI+ G + I + ++L +S A S +++ ++
Sbjct: 32 KDLGEQINYTITGIDAGAGIMLATQNAIKDYHLDDDNWQLQTSSTAAMTSTLQKAMKDKR 91
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFS 251
P V W PH + + ++ +L + + G E +++T+VR + P+ ++L N ++
Sbjct: 92 PIVVTGWTPHWMFTKFDLKFLEDPKNVYGNAE-NIHTIVRKGLKEDKPSAYQVLDNFFWT 150
Query: 252 VALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
+E+M + N+ D + + ++ +P+ + W GV DG +
Sbjct: 151 AEDMSEVMLEV-NDGVDPEEAAKKWIKNNPEKVAKWTDGVEKVDGDE 196
Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYW 83
++ W A+T + + L++ +GYK I+ + + + S+ D + W
Sbjct: 193 DGDEIKLTYVAWDSEIASTNVVAEALKQ-VGYKPTIQAMEIQPMWASVATDAADGMVAAW 251
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
P+ +G + + NL+GAK LAV
Sbjct: 252 LPNTSGIYYK-DYKGKFEDLGPNLKGAKIGLAVPKYM 287
>gi|304392894|ref|ZP_07374825.1| substrate-binding region of ABC-type glycine betaine transport
system [Ahrensia sp. R2A130]
gi|303294892|gb|EFL89261.1| substrate-binding region of ABC-type glycine betaine transport
system [Ahrensia sp. R2A130]
Length = 321
Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats.
Identities = 39/321 (12%), Positives = 87/321 (27%), Gaps = 39/321 (12%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M + A + ++A V WT A + + ++ +G + +
Sbjct: 5 MRTLTAAITLSLLSTTAFAA-----EKVSIGVPSWTGAQAVAHLLAEVVTSRIGGEAELV 59
Query: 61 LLAVPVTFRSLK--NKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
F+++ ID+ W P+ E F Y++ ++ N V+
Sbjct: 60 PGNNATIFQAMDQGKGDIDVHPDVWLPNQESFTKKYVDGAGTVQLSSNPYEGNQGFCVSK 119
Query: 119 ---------VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
LG +++ PG + +
Sbjct: 120 NFAAENKVTDIADLGRPDVAAKMDSDGNGKGEMWIGAPGWASANVNEVKVRDYGLGD-FI 178
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIH------------------- 210
I A E ++++ F ++PH I ++
Sbjct: 179 EPIRAEEAVKTARVKDSIAKGEGYAFYCYKPHAIWYMFDVEMLTEPTFDPANYKMVQPSD 238
Query: 211 ---YLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQ 267
+ + + +V ++ P I+ K S + I +
Sbjct: 239 SPDWFTDSKVATKDALKNVQIAWSKSLAERSPAIAEFFDRFKLSADDVSSFAYEISGKGR 298
Query: 268 DRQFVGRTMLRTHPDLLKNWL 288
+ V + + + D + WL
Sbjct: 299 EPGEVAKEWVAANSDRVDGWL 319
>gi|256785690|ref|ZP_05524121.1| glycine betaine-binding lipoprotein [Streptomyces lividans TK24]
gi|289769583|ref|ZP_06528961.1| glycine betaine-binding lipoprotein [Streptomyces lividans TK24]
gi|289699782|gb|EFD67211.1| glycine betaine-binding lipoprotein [Streptomyces lividans TK24]
Length = 324
Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats.
Identities = 39/311 (12%), Positives = 93/311 (29%), Gaps = 28/311 (9%)
Query: 4 ILAVCLFLTTFSISYA---------RDADSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
+ V A +A V + W A A+ +LE LG
Sbjct: 15 LAGVAALTLLTGCGAADMTKQASPYANAQGARTVTLSVQSWVGAQANVAVAQYLLEHELG 74
Query: 55 YKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKY-M 113
Y+ + + + +L +D + W + Y+++ +L +
Sbjct: 75 YRVDTVQVDEVPAWDALSQGRVDAILEDWG--HPEQEQRYVQDKKTIAPGGDLGVTGHIG 132
Query: 114 LAVNDVGFA--LGIKSYQDIAKYKKELGAKIYGIEPG---NEGNQRILDMINNNKFSLKG 168
V + +++++ KY L G + + D L
Sbjct: 133 WFVPTYFAKKHPDVTNWKNLNKYADLLRTAESGGKGQLLDGSPSYVTNDKALVKNLDLDY 192
Query: 169 FRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE----------- 217
+ SE A +Q+++ + P + + P + + + +
Sbjct: 193 QVVFAGSEAAQITQMQQFAKERKPFLSYWYTPQWLMEKVPMTEVKLPPYEEGCDADPEKV 252
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTML 277
+ + + + + + LK ++ +N++ +I K + + +
Sbjct: 253 ACAYPVTPLQKYLNAGFAKDGGKAAEFLKRFTWTTEDQNQVSLMIAQQKMRPEEAAKKWV 312
Query: 278 RTHPDLLKNWL 288
H + K WL
Sbjct: 313 DGHESVWKKWL 323
>gi|46907248|ref|YP_013637.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Listeria
monocytogenes serotype 4b str. F2365]
gi|217964884|ref|YP_002350562.1| glycine betaine-binding protein [Listeria monocytogenes HCC23]
gi|226223634|ref|YP_002757741.1| glycine betaine ABC transporter (glycine betaine-binding protein)
[Listeria monocytogenes Clip81459]
gi|254931400|ref|ZP_05264759.1| glycine betaine/L-proline ABC transporter [Listeria monocytogenes
HPB2262]
gi|46880515|gb|AAT03814.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Listeria
monocytogenes serotype 4b str. F2365]
gi|217334154|gb|ACK39948.1| glycine betaine-binding protein [Listeria monocytogenes HCC23]
gi|225876096|emb|CAS04802.1| Putative glycine betaine ABC transporter (glycine betaine-binding
protein) [Listeria monocytogenes serotype 4b str. CLIP
80459]
gi|293582950|gb|EFF94982.1| glycine betaine/L-proline ABC transporter [Listeria monocytogenes
HPB2262]
gi|307570557|emb|CAR83736.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Listeria
monocytogenes L99]
gi|328466909|gb|EGF38018.1| glycine betaine ABC transporter (glycine betaine-binding protein)
[Listeria monocytogenes 1816]
gi|328475366|gb|EGF46139.1| glycine betaine ABC transporter (glycine betaine-binding protein)
[Listeria monocytogenes 220]
gi|332311425|gb|EGJ24520.1| Glycine betaine/L-proline ABC transporter [Listeria monocytogenes
str. Scott A]
Length = 300
Score = 142 bits (358), Expect = 6e-32, Method: Composition-based stats.
Identities = 33/167 (19%), Positives = 76/167 (45%), Gaps = 2/167 (1%)
Query: 132 AKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI 191
+++ I GI+ G + I + ++L +S A S +++ ++
Sbjct: 32 KDLGEQINYTITGIDAGAGIMLATQNAIKDYHLDDDNWQLQTSSTAAMTSTLQKAMKDKR 91
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFS 251
P V W PH + + ++ +L + + G E +++T+VR + P+ ++L N ++
Sbjct: 92 PIVVTGWTPHWMFTKFDLKFLDDPKNVYGNAE-NIHTIVRKGLKEDKPSAYQVLDNFFWT 150
Query: 252 VALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
+E+M + N+ D + + ++ +P+ + W GV DG +
Sbjct: 151 AEDMSEVMLEV-NDGVDPEEAAKKWIKNNPEKVAKWTDGVEKVDGDE 196
Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYW 83
++ W A+T + + L++ +GYK I+ + + + S+ D + W
Sbjct: 193 DGDEIKLTYVAWDSEIASTNVVAEALKQ-VGYKPTIQAMEIQPMWASVATDAADGMVAAW 251
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
P+ +G + + NL+GAK LAV
Sbjct: 252 LPNTSGIYYK-DYKGKFEDLGPNLKGAKIGLAVPKYM 287
>gi|323141264|ref|ZP_08076160.1| ABC transporter, substrate-binding protein, QAT family
[Phascolarctobacterium sp. YIT 12067]
gi|322414221|gb|EFY05044.1| ABC transporter, substrate-binding protein, QAT family
[Phascolarctobacterium sp. YIT 12067]
Length = 625
Score = 142 bits (358), Expect = 6e-32, Method: Composition-based stats.
Identities = 58/340 (17%), Positives = 100/340 (29%), Gaps = 40/340 (11%)
Query: 1 MYKILAVCLFLTTFSISY------ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
M + L+ L S+ + A + + V FAD GW + A+ I
Sbjct: 1 MLRKLSAVFLLILTSLGFIAGNVNAANEQAKQEVVFADAGWDSVKFHNAVAGFIGTHAYN 60
Query: 55 YKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
I + P+ +L +D+ M W + ++ G + + N K L
Sbjct: 61 ITPKIISGSTPIIQTALLRGDVDVHMELWTDN-VPTFKADMKTGKLLNLGINFDDDKQGL 119
Query: 115 AVNDVGFALGIK------------------SYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
V K + ++YG PG ++ +
Sbjct: 120 YVPRYLIEGDAKRGIKALAPDLRTVKDLARYAHLFTDPEDPSKGRLYGAIPGWSIDKILY 179
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPG-G 215
+ SE A S P V ++EP + L++ L
Sbjct: 180 LKYEAYGLNKNYVYFRSGSEPALNSAFLAAYTKGEPIVGYNYEPTWLTGKLDLVLLQDEP 239
Query: 216 EEISGFGEA-------SVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQD 268
GF V V K P L+ + AL E + I + K
Sbjct: 240 YNEVGFQRGLTEARSVPVCIVANKQLQSKAPEFVAFLQKYHTTSALTAEALAHIADTKCT 299
Query: 269 RQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
++ HP+LL WL +D + + + +
Sbjct: 300 YDEAAIWFMQRHPELLAQWLP-------EDKLQSINKALK 332
>gi|221210667|ref|ZP_03583647.1| periplasmic binding protein [Burkholderia multivorans CGD1]
gi|221169623|gb|EEE02090.1| periplasmic binding protein [Burkholderia multivorans CGD1]
Length = 381
Score = 142 bits (358), Expect = 6e-32, Method: Composition-based stats.
Identities = 47/320 (14%), Positives = 95/320 (29%), Gaps = 42/320 (13%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYW 83
V FA W + +T + ILE+ G KT++ + T +L + ++ W
Sbjct: 67 DGKTVHFAGVTWESGSFSTEVLRQILEKGYGCKTDVVPGSTAATETALARNDLQVWSEQW 126
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA-----------LGIKSYQDIA 132
E + G K V + G+ S D+
Sbjct: 127 TGRSEIVAKAVSAGTVKLVGDTLPGGTKEGWFVPEYVVKGDAARKIKPVAPGLASVDDLP 186
Query: 133 KYKKELGA-------KIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
K+K+ + G + + ++ K + A + I
Sbjct: 187 KFKQVFADEEEPDKGRFLNCPTGWDCERVNTRLLRVLKLDQSYTNFHPGTGAALDAAIAS 246
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE-----------------ISGFGEASVYT 228
+ P +F W P + + L S + + +
Sbjct: 247 AYQRGAPILFYYWGPAALMAKYKFVALKMPAYNETCWKTLREESATNQCASSYMVSHLKI 306
Query: 229 VVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
V + D P + + + + F + N+ + + K D + L+T DL K W+
Sbjct: 307 GVSKAFYDANPALVSVFEKVSFPMDYLNQTILDMTTKKIDGAAMATQFLKTRADLWKQWV 366
Query: 289 IGVTTFDGQDPSRQLERFMN 308
D ++++ +
Sbjct: 367 P-------ADVAQKIAGSLK 379
>gi|296387592|ref|ZP_06877067.1| putative binding protein component of ABC transporter [Pseudomonas
aeruginosa PAb1]
Length = 311
Score = 142 bits (358), Expect = 6e-32, Method: Composition-based stats.
Identities = 44/307 (14%), Positives = 89/307 (28%), Gaps = 35/307 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M +++ + A +R +T+ TA+T+ L++ GY +
Sbjct: 1 MNRLIRSLCLA--CAGLLAAGLAQAETLRIGGKTFTEQRILTAITAQFLQKR-GYDVTVT 57
Query: 61 LL-AVPVTFRSLKNKGIDIFMGYWYPSLEKF---------------IAPYLEEGSIKLVA 104
+ + ++ +DI Y SL + + E + +
Sbjct: 58 TGLGSTLARSAQESGQLDIVWEYTGSSLIVYNHIDEKLDAAASYRRVKQLDEAQGLVWLK 117
Query: 105 ENLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKKE-------LGAKIYGIEPGNEGNQRIL 156
Y LA+ + GI+S D+A+ E +
Sbjct: 118 PTRFNNTYALAMPEEQAERLGIQSVSDLARVLAEQQEAEPGSTHLFAMDPEFAGRPDGLG 177
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
M + + + +N + L + D + L +
Sbjct: 178 PMSELYGLHFTRNDIRQMDAG----LVYTALKNRQVFLGLVYTTDGRLKDFKLRVLKDDK 233
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F + VVR + + + P + L I + A + + +Q Q V
Sbjct: 234 QYFPF--YNAAPVVRKEVMQRHPEFATLFDPIIERLDDATMQALNARVDIEQQTPQKVAA 291
Query: 275 TMLRTHP 281
LR H
Sbjct: 292 DFLREHR 298
>gi|290893834|ref|ZP_06556813.1| glycine betaine/L-proline ABC transporter [Listeria monocytogenes
FSL J2-071]
gi|290556661|gb|EFD90196.1| glycine betaine/L-proline ABC transporter [Listeria monocytogenes
FSL J2-071]
Length = 288
Score = 142 bits (357), Expect = 6e-32, Method: Composition-based stats.
Identities = 33/167 (19%), Positives = 77/167 (46%), Gaps = 2/167 (1%)
Query: 132 AKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI 191
+++ I GI+ G + I + + ++L +S A S +++ ++
Sbjct: 20 KDLGEQINYTITGIDAGAGIMLATQNAIKDYQLDDDNWQLQTSSTAAMTSTLQKAMKDKR 79
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFS 251
P V W PH + + ++ +L + + G E +++T+VR + P+ ++L N ++
Sbjct: 80 PIVVTGWTPHWMFTKFDLKFLDDPKNVYGNAE-NIHTIVRKGLKEDKPSAYQVLDNFFWT 138
Query: 252 VALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
+E+M + N+ D + + ++ +P+ + W GV DG +
Sbjct: 139 AEDMSEVMLEV-NDGVDPEEAAKKWIKNNPEKVAKWTDGVEKVDGDE 184
Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYW 83
++ W A+T + + L++ +GYK I+ + + + S+ D + W
Sbjct: 181 DGDEIKLTYVAWDSEIASTNVVAEALKQ-VGYKPTIQAMEIQPMWASVATDAADGMVAAW 239
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
P+ +G + + NL+GAK LAV
Sbjct: 240 LPNTSGIYYK-DYKGKFEDLGPNLKGAKIGLAVPKYM 275
>gi|229541807|ref|ZP_04430867.1| Substrate-binding region of ABC-type glycine betaine transport
system [Bacillus coagulans 36D1]
gi|229326227|gb|EEN91902.1| Substrate-binding region of ABC-type glycine betaine transport
system [Bacillus coagulans 36D1]
Length = 302
Score = 142 bits (357), Expect = 7e-32, Method: Composition-based stats.
Identities = 38/305 (12%), Positives = 85/305 (27%), Gaps = 32/305 (10%)
Query: 1 MYKILAVCLFLTTFSISYAR-----DADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M K+ A+ L + A V+ T T+ M ++E
Sbjct: 1 MKKLAALLLVFCLSIFAGGCTLPGLSAADSQSVKIGMTNSTETQIIGYMEKDMIEHYTNI 60
Query: 56 KTNIKL--LAVPVTFRSLKNKGIDIFMGYWY---------------PSLEKFIAPYLEEG 98
K ++ + V +++ + I+I + P I E
Sbjct: 61 KVDMVNNLGSSIVLHKAMTSGQINISAVRYTGTDLAGALGMEPVTDPEKALKIVKQQFEK 120
Query: 99 SIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ G A +++ K G++ +
Sbjct: 121 RFHQTWFDSFGFANTYAFTVTKSLADKDHLTKVSQLKPVAKDLRLGVDNSWLKRKG---- 176
Query: 159 INNNKFSLKGFRLIEA-SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
+ +K + + + + ++ V L++ + N+ L +
Sbjct: 177 -DGYDGFVKTYGFTFGKTYPMELGLVYKAVKSGKADVVLAYSTDGRINAYNLVMLKD--D 233
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
F VVR D L + P + ++L+ + K ++ ++ V +
Sbjct: 234 KHFFPPYDASPVVRDDTLKQHPELRKVLQKLVGKIDTKTMQQLNYESDVEMKEPSTVAKE 293
Query: 276 MLRTH 280
L H
Sbjct: 294 FLEKH 298
>gi|116051926|ref|YP_789231.1| putative binding protein component of ABC transporter [Pseudomonas
aeruginosa UCBPP-PA14]
gi|313109311|ref|ZP_07795278.1| putative binding protein component of ABC transporter [Pseudomonas
aeruginosa 39016]
gi|115587147|gb|ABJ13162.1| putative binding protein component of ABC transpor [Pseudomonas
aeruginosa UCBPP-PA14]
gi|310881780|gb|EFQ40374.1| putative binding protein component of ABC transporter [Pseudomonas
aeruginosa 39016]
Length = 311
Score = 142 bits (357), Expect = 7e-32, Method: Composition-based stats.
Identities = 44/307 (14%), Positives = 89/307 (28%), Gaps = 35/307 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M +++ + A +R +T+ TA+T+ L++ GY +
Sbjct: 1 MNRLIRSLCLA--CAGLLAAGLAQAETLRIGGKTFTEQRILTAITAQFLQKR-GYDVTVT 57
Query: 61 LL-AVPVTFRSLKNKGIDIFMGYWYPSLEKF---------------IAPYLEEGSIKLVA 104
+ + ++ +DI Y SL + + E + +
Sbjct: 58 TGLGSTLARAAQESGQLDIVWEYTGSSLIVYNHIDEKLDAAASYRRVKQLDEAQGLVWLK 117
Query: 105 ENLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKKE-------LGAKIYGIEPGNEGNQRIL 156
Y LA+ + GI+S D+A+ E +
Sbjct: 118 PTRFNNTYALAMPEEQAERLGIQSVSDLARVLAEQQEAEPGSTHLFAMDPEFAGRPDGLG 177
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
M + + + +N + L + D + L +
Sbjct: 178 PMSELYGLHFTRNDIRQMDAG----LVYTALKNRQVFLGLVYTTDGRLKDFKLRVLKDDK 233
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F + VVR + + + P + L I + A + + +Q Q V
Sbjct: 234 QYFPF--YNAAPVVRKEVMQRHPEFATLFDPIIERLDDATMQALNARVDIEQQTPQKVAA 291
Query: 275 TMLRTHP 281
LR H
Sbjct: 292 DFLREHR 298
>gi|213969588|ref|ZP_03397724.1| ABC transporter, periplasmic substrate-binding protein [Pseudomonas
syringae pv. tomato T1]
gi|213925684|gb|EEB59243.1| ABC transporter, periplasmic substrate-binding protein [Pseudomonas
syringae pv. tomato T1]
Length = 315
Score = 142 bits (357), Expect = 7e-32, Method: Composition-based stats.
Identities = 48/322 (14%), Positives = 102/322 (31%), Gaps = 43/322 (13%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFM 80
A+ P++F W + T + I+E+ GY T+ + +L I +
Sbjct: 2 SAEKARPIQFGALTWESGSLITEVLRAIVEKGYGYPTDTLPGSTVSLETALAKNDIQVIA 61
Query: 81 GYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG-----------FALGIKSYQ 129
W EG + + + ++ A V + A +K+ +
Sbjct: 62 EEWA-GRSPVWVKAEAEGKVLGLGDIVKHADEGWWVPEYVIKGDAAKGIKPMAPELKTVE 120
Query: 130 DIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
D+A+YK + G + + S A ++
Sbjct: 121 DLARYKDVFKDPESPEKGRFLNSPSGWTSEIVNTQKLKAYGLNDSFVNFRTGSGAALDAE 180
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG-EEISGFG----------------EAS 225
+ R P +F W P P+ L + + A+
Sbjct: 181 VAAAIRLGKPVLFYYWSPTPLLGTYKFIKLQEPAFDAEAWKTLTDASNPNPRGTSSLAAT 240
Query: 226 VYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLK 285
+ V +++ + P + + K + F + L N+ + + +D + L+ +PD+ K
Sbjct: 241 LSIGVSAEFSKQYPELVSVFKQVDFPIGLLNQTLSDMSKKHEDPKVAATRFLKQNPDVWK 300
Query: 286 NWLIGVTTFDGQDPSRQLERFM 307
WL D + ++ +
Sbjct: 301 TWLP-------ADVASRVSAAL 315
>gi|301067140|ref|YP_003789163.1| putative glycine/betaine/carnitine ABC transporter substrate
binding lipoprotein precursor [Lactobacillus casei str.
Zhang]
gi|300439547|gb|ADK19313.1| Putative glycine/betaine/carnitine ABC transporter, substrate
binding lipoprotein precursor [Lactobacillus casei str.
Zhang]
gi|327383148|gb|AEA54624.1| putative glycine betaine ABC transporter substrate-binding and
permease component [Lactobacillus casei LC2W]
gi|327386332|gb|AEA57806.1| putative glycine betaine ABC transporter substrate-binding and
permease component [Lactobacillus casei BD-II]
Length = 300
Score = 142 bits (357), Expect = 8e-32, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 66/163 (40%), Gaps = 2/163 (1%)
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
++ I GI+ G + K ++L +S A S +++ + P V
Sbjct: 38 PQINYTITGIDAGAGVMTSTDKALKAYGLVDKKWQLQPSSTAAMTSTLQKAIADKRPIVV 97
Query: 196 LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
W PH + + + +L + + G E ++T+VR P ++L ++
Sbjct: 98 TGWTPHWMFTKFPLKFLKDPKNVYGKTE-QIHTIVRKGLKQDAPQAYQVLDQFHWTPEEM 156
Query: 256 NEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
+ +M + N +D + ++ HP+ + W GVT G+
Sbjct: 157 SSVMLAV-NGGKDPAEAAKAFVKKHPEQIAQWTKGVTHVSGKP 198
Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 2/102 (1%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGY 82
+ W A+T + + +L + +GY I+ + + S+ K D +
Sbjct: 195 SGKPKLTMTYIAWDSEIASTNVVATVLRQ-IGYNVTIRAMEPQPVWASVATKAADAQVSA 253
Query: 83 WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
W P+ + + + + NL GAK LAV +
Sbjct: 254 WLPNTSAKLYS-DYKNQVVDLGVNLDGAKVGLAVPKYMKNIN 294
>gi|152986246|ref|YP_001346602.1| putative ABC transporter binding protein subunit [Pseudomonas
aeruginosa PA7]
gi|150961404|gb|ABR83429.1| probable binding protein component of ABC transporter [Pseudomonas
aeruginosa PA7]
Length = 311
Score = 141 bits (356), Expect = 8e-32, Method: Composition-based stats.
Identities = 46/306 (15%), Positives = 88/306 (28%), Gaps = 35/306 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M ++L + A +R +T+ TA+T+ L++ GY ++
Sbjct: 1 MNRLLRSLCLA--CAGLLAAGLAQAETLRIGGKTFTEQRILTAITAQFLQKR-GYDVSVT 57
Query: 61 LL-AVPVTFRSLKNKGIDIFMGYWYPSLEKF---------------IAPYLEEGSIKLVA 104
+ + ++ +DI Y SL + + E + +
Sbjct: 58 TGLGSTLARAAQESGQLDIVWEYTGSSLIVYNHIDEKLDAAASYRRVKQLDEAQGLVWLK 117
Query: 105 ENLQGAKYMLAVNDVGFAL-GIKSYQDIA-------KYKKELGAKIYGIEPGNEGNQRIL 156
Y LA+ + GI S D+A K + +
Sbjct: 118 PTRFNNTYALAMPEEEAERLGIHSVSDLARVLAEQRKAEPGSSHLFAMDPEFAGRPDGLG 177
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
M + + + +N + L + D + L
Sbjct: 178 PMSELYGLHFTRDDIRQMDAG----LVYTALKNRQVFLGLVYTTDGRLKDFKLRVLKDDR 233
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F + VVR D + + P + L I + A + + +Q Q V
Sbjct: 234 QYFPF--YNAAPVVRKDVMQRHPEFATLFDPIIERLDDATMQALNARVDVQQQTPQKVAA 291
Query: 275 TMLRTH 280
LR H
Sbjct: 292 DFLREH 297
>gi|67923046|ref|ZP_00516539.1| Substrate-binding region of ABC-type glycine betaine transport
system [Crocosphaera watsonii WH 8501]
gi|67855125|gb|EAM50391.1| Substrate-binding region of ABC-type glycine betaine transport
system [Crocosphaera watsonii WH 8501]
Length = 340
Score = 141 bits (356), Expect = 9e-32, Method: Composition-based stats.
Identities = 48/334 (14%), Positives = 97/334 (29%), Gaps = 47/334 (14%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCT---------PVRFADTGWTDIAATTAMTSVILEE 51
+ + + + + LT+ I+ S VR A + W + T + + LE
Sbjct: 4 LKRTIPLFVLLTSSLIACQTTPPSEDNTSQSTQKVTVRTAHSSWIEEHFQTEIVKIGLE- 62
Query: 52 ILGYKTNI-KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGA 110
LGY+ K + P + SL N +D + Y+YP ++F E ++ V
Sbjct: 63 KLGYEVETPKEIEYPALYISLANGDLDYSIVYYYPGHKEFFENAGGEDKLEAVGTITADG 122
Query: 111 KYMLAVNDVGFALGIKSY---------QDIAKYKKELGAKIYGIEPGNEGNQRILDMINN 161
++ + + + A + G PG I ++
Sbjct: 123 TQGYQIDRKTAEQHNITNLEQLKDPKIAQLFDSDGDGKANLVGCNPGWACESIIEHHLDA 182
Query: 162 NKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG------ 215
+ + A + + F ++ PH I + L
Sbjct: 183 YELRDT-VEHDQGQYTALLANSVTRYKEGESVFFYAYNPHWIGATLKPEEDVVWLEVAFT 241
Query: 216 -----------------EEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEM 258
+ GF + +L + P + ++ NE
Sbjct: 242 DLPTKIAENMEKDTLVEGKNLGFPKTEQRIATNKQFLAENPIAKSWFELVQIPAKDINEE 301
Query: 259 MKLILNNKQDRQFV---GRTMLRTHPDLLKNWLI 289
I + + + + + DL +WL
Sbjct: 302 SLRIKEGENKAEDIRRHAEEWVEKNQDLFNSWLE 335
>gi|326789322|ref|YP_004307143.1| glycine/betaine ABC transporter periplasmic protein [Clostridium
lentocellum DSM 5427]
gi|326540086|gb|ADZ81945.1| ABC-type glycine betaine transport, periplasmic subunit
[Clostridium lentocellum DSM 5427]
Length = 521
Score = 141 bits (356), Expect = 9e-32, Method: Composition-based stats.
Identities = 33/297 (11%), Positives = 83/297 (27%), Gaps = 29/297 (9%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKL 61
++A L + + A + +T+ M + ++E+ I L
Sbjct: 230 VVAAMLVILFLFSTIAAPKKGNKIITIGTKDFTEQMILGHMVADLIEDRTDITVERKINL 289
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEE----------------GSIKLVAE 105
V F +L + ID+++ Y + + +I+++ +
Sbjct: 290 GGTQVCFSALTSNAIDMYIEYSGTAYGDTLGNPPISDMKEVYATVKRDFKELYNIEVLKQ 349
Query: 106 NLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFS 165
Y LAV +E ++ +
Sbjct: 350 MNFNNTYALAVTKEVANEYNLKKISDLSQYSGQLVSGTTLE-FLNREDGMMGLTKRYNLK 408
Query: 166 LKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEAS 225
K ++ S N V ++ + ++ L ++
Sbjct: 409 FKESIGLDGSPR------YIALMNKEVDVVDAFSTDGLLKKFDLVVLEDDKDFF--PPYY 460
Query: 226 VYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+VR + +++ P I +L + + + + + + + V R L +
Sbjct: 461 AIPIVRDETIERYPEIVDILDELGGYLNNETMINLNYQVDELQIEPEVVARQFLVDN 517
>gi|313609550|gb|EFR85093.1| glycine betaine-binding protein [Listeria monocytogenes FSL F2-208]
Length = 229
Score = 141 bits (356), Expect = 9e-32, Method: Composition-based stats.
Identities = 33/167 (19%), Positives = 76/167 (45%), Gaps = 2/167 (1%)
Query: 132 AKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI 191
+++ I GI+ G + I + ++L +S A S +++ ++
Sbjct: 20 KDLGEQINYTITGIDAGAGIMLATQNAIKDYHLDDDNWQLQTSSTAAMTSTLQKAMKDKR 79
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFS 251
P V W PH + + ++ +L + + G E +++T+VR + P+ ++L N ++
Sbjct: 80 PIVVTGWTPHWMFTKFDLKFLDDPKNVYGNAE-NIHTIVRKGLKEDKPSAYQVLDNFFWT 138
Query: 252 VALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
+E+M + N+ D + + ++ +P+ + W GV DG +
Sbjct: 139 AEDMSEVMLEV-NDGVDPEEAAKKWIKNNPEKVAKWTDGVEKVDGDE 184
Score = 36.7 bits (83), Expect = 3.8, Method: Composition-based stats.
Identities = 9/50 (18%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKN 73
++ W A+T + + L++ +GYK I+ + + + S+
Sbjct: 181 DGDEIKLTYVAWDSEIASTNVVAEALKQ-VGYKPTIQAMEIQPMWASVAT 229
>gi|319441516|ref|ZP_07990672.1| substrate binding component of glycine/betaine transport system
[Corynebacterium variabile DSM 44702]
Length = 336
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 49/274 (17%), Positives = 101/274 (36%), Gaps = 13/274 (4%)
Query: 23 DSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMG 81
D + A W + A + + +LE+ GY +I+ L + + ID+ M
Sbjct: 67 DDDKKITLAAFNGWDESFAASHLLKYVLEDE-GYSVDIEALDAGPGYTGVSRGDIDVVMD 125
Query: 82 YWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAK 141
W P + ++ I+ + A LAVN+ A I + + G +
Sbjct: 126 TWLPVTHEEYLEQYQDS-IEPLGCWYDNAVLTLAVNEDSPAQSIAD---LKDMGSDYGKR 181
Query: 142 IYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPH 201
I GIEP + I + + +S A +++++ + W PH
Sbjct: 182 IVGIEPSAGLTAQTEKAIPVYGLDD--WDFVTSSTPAMLAELKKATNAGDDILVTLWRPH 239
Query: 202 PINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKL 261
+ L E G G ++Y R+ + D P +++LL+N+ + +
Sbjct: 240 WAYDAFPVRDLEDPEGAMG-GAENIYNFSRTGFGDDNPYVAQLLQNLVLDDEHLASLENV 298
Query: 262 ILNN----KQDRQFVGRTMLRTHPDLLKNWLIGV 291
+ ++ ++ + +P+ ++ W G
Sbjct: 299 MFSDDNYGGENLDKAAAEWAKDNPEFIEEWKAGA 332
>gi|21223209|ref|NP_628988.1| glycine betaine-binding lipoprotein [Streptomyces coelicolor A3(2)]
gi|9367462|emb|CAB97435.1| putative glycine betaine-binding lipoprotein [Streptomyces
coelicolor A3(2)]
Length = 322
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 44/315 (13%), Positives = 97/315 (30%), Gaps = 29/315 (9%)
Query: 1 MYKILAVCLFLTTFSISYARD----------ADSCTPVRFADTGWTDIAATTAMTSVILE 50
M LA LT + A D A V + W A A+ +LE
Sbjct: 9 MTSALAGVAALTLLTGCGAADMTKQASPYANAQGARTVTLSVQSWVGAQANVAVAQYLLE 68
Query: 51 EILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGA 110
LGY+ + + + +L +D + W + Y+++ +L
Sbjct: 69 HELGYRVDTVQVDEVPAWDALSQGRVDAILEDWG--HPEQEQRYVQDKKTIAPGGDLGVT 126
Query: 111 KY-MLAVNDVGFA--LGIKSYQDIAKYKKELGAKIYGIEPG---NEGNQRILDMINNNKF 164
+ V + +++++ KY L G + + D
Sbjct: 127 GHIGWFVPTYFAKKHPDVTNWKNLNKYADLLRTAESGGKGQLLDGSPSYVTNDKALVKNL 186
Query: 165 SLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE------- 217
L + SE A +Q+++ + P + + P + + + +
Sbjct: 187 DLDYQVVFAGSEAAQITQMQQFAKERKPFLSYWYTPQWLMEKVPMTEVKLPPYEEGCDAD 246
Query: 218 ----ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVG 273
+ + + + + + LK ++ +N++ +I K +
Sbjct: 247 PEKVACAYPVTPLQKYLNAGFAKDGGKAAEFLKRFTWTTEDQNQVSLMIAQQKMRPEEAA 306
Query: 274 RTMLRTHPDLLKNWL 288
+ + H + K WL
Sbjct: 307 KKWVDGHESVWKKWL 321
>gi|254456003|ref|ZP_05069432.1| ABC transporter, QAT family, substrate-binding protein, putative
[Candidatus Pelagibacter sp. HTCC7211]
gi|207083005|gb|EDZ60431.1| ABC transporter, QAT family, substrate-binding protein, putative
[Candidatus Pelagibacter sp. HTCC7211]
Length = 320
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 49/319 (15%), Positives = 104/319 (32%), Gaps = 33/319 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
KI+ L SI +A + V+ D GWT A + + ++ + +G + +
Sbjct: 1 MKIIKTTLVAGLISI-FATFSSFAEKVKIGDPGWTGATAIANLLAAVVTDKMGGEAELVP 59
Query: 62 LAVPVTFRSL--KNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ ++ I++ W P+ + + + +G++KL ++ +G +
Sbjct: 60 GNNTAIYGAIDRSKGEIEVHPDIWLPNQQAYTNDLVPKGTLKLSSKPYEGNQGYCVSQQF 119
Query: 120 GFALGIKSYQDI--AKYKKELGAKIYGIEPGNEGNQRILDM------INNNKFSLKGFRL 171
+ I + +D+ + K + + G G + + G
Sbjct: 120 AKKMNITAIEDLGRPEVVKAMDSDGNGKGEFWIGADGWASANVNQVKLRDYGLYDAGIEP 179
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE-----EISGFGEASV 226
I A+E +++ + F ++PH I ++ L + +
Sbjct: 180 IRAAEAVKNARVLDSIKKGEGYAFYCYKPHAIWGMADVVMLEEPKFDPAKYKMVQPKEDA 239
Query: 227 YT-----VVRSDYLDK------------CPNISRLLKNIKFSVALENEMMKLILNNKQDR 269
V D L K P I KN + + + M I K+
Sbjct: 240 DWYNKSYVASKDALKKIQIGWGTSLESKSPAIVEFFKNFQLTADDVSAMAYAISVEKKQP 299
Query: 270 QFVGRTMLRTHPDLLKNWL 288
V R + + + WL
Sbjct: 300 ADVARAWMDANKSTVDGWL 318
>gi|191639084|ref|YP_001988250.1| GbuC protein [Lactobacillus casei BL23]
gi|227533844|ref|ZP_03963893.1| glycine betaine ABC superfamily ATP binding cassette transporter,
binding protein [Lactobacillus paracasei subsp.
paracasei ATCC 25302]
gi|190713386|emb|CAQ67392.1| GbuC protein [Lactobacillus casei BL23]
gi|227188545|gb|EEI68612.1| glycine betaine ABC superfamily ATP binding cassette transporter,
binding protein [Lactobacillus paracasei subsp.
paracasei ATCC 25302]
Length = 297
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 66/163 (40%), Gaps = 2/163 (1%)
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
++ I GI+ G + K ++L +S A S +++ + P V
Sbjct: 35 PQINYTITGIDAGAGVMTSTDKALKAYGLVDKKWQLQPSSTAAMTSTLQKAIADKRPIVV 94
Query: 196 LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
W PH + + + +L + + G E ++T+VR P ++L ++
Sbjct: 95 TGWTPHWMFTKFPLKFLKDPKNVYGKTE-QIHTIVRKGLKQDAPQAYQVLDQFHWTPEEM 153
Query: 256 NEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
+ +M + N +D + ++ HP+ + W GVT G+
Sbjct: 154 SSVMLAV-NGGKDPAEAAKAFVKKHPEQIAQWTKGVTHVSGKP 195
Score = 57.9 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 2/102 (1%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGY 82
+ W A+T + + +L + +GY I+ + + S+ K D +
Sbjct: 192 SGKPKLTMTYIAWDSEIASTNVVATVLRQ-IGYNVTIRAMEPQPVWASVATKAADAQVSA 250
Query: 83 WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
W P+ + + + + NL GAK LAV +
Sbjct: 251 WLPNTSAKLYS-DYKNQVVDLGVNLDGAKVGLAVPKYMKNIN 291
>gi|254242581|ref|ZP_04935903.1| hypothetical protein PA2G_03335 [Pseudomonas aeruginosa 2192]
gi|126195959|gb|EAZ60022.1| hypothetical protein PA2G_03335 [Pseudomonas aeruginosa 2192]
Length = 311
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 44/306 (14%), Positives = 90/306 (29%), Gaps = 35/306 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M +++ + +A +R +T+ TA+T+ L++ GY +
Sbjct: 1 MNRLIRSLCLA--CAGLFAAGLAQAETLRIGGKTFTEQRILTAITAQFLQKR-GYDVTVT 57
Query: 61 LL-AVPVTFRSLKNKGIDIFMGYWYPSLEKF---------------IAPYLEEGSIKLVA 104
+ + ++ +DI Y SL + + E + +
Sbjct: 58 TGLGSTLARAAQESGQLDIVWEYTGSSLIVYNHIDEKLDAAASYRRVKQLDEAQGLVWLK 117
Query: 105 ENLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKKE-------LGAKIYGIEPGNEGNQRIL 156
Y LA+ + GI+S D+A+ E +
Sbjct: 118 PTRFNNTYALAMPEEQAERLGIQSVSDLARVLAEQQEAEPGSTHLFAMDPEFAGRPDGLG 177
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
M + + + +N + L + D + L +
Sbjct: 178 PMSELYALHFTRNDIRQMDAG----LVYTALKNRQVFLGLVYTTDGRLKDFKLRVLKDDK 233
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F + VVR + + + P + L I + A + + +Q Q V
Sbjct: 234 QYFPF--YNAAPVVRKEVMQRHPEFATLFDPIIERLDDATMQALNARVDIEQQTPQKVAA 291
Query: 275 TMLRTH 280
LR H
Sbjct: 292 DFLREH 297
>gi|302558872|ref|ZP_07311214.1| glycine betaine-binding lipoprotein [Streptomyces griseoflavus
Tu4000]
gi|302476490|gb|EFL39583.1| glycine betaine-binding lipoprotein [Streptomyces griseoflavus
Tu4000]
Length = 316
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 40/290 (13%), Positives = 91/290 (31%), Gaps = 19/290 (6%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKG 75
S +A V + W A A+ +LE LGY+ + + + +L
Sbjct: 28 SSPFANARGARTVTLSVQSWVGAQANVAVAQYLLEHELGYRVDTVQVDEVPAWDALSQGR 87
Query: 76 IDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKY-MLAVNDVGFA--LGIKSYQDIA 132
+D + W + Y+ + + +L + V + ++++
Sbjct: 88 VDAILEDWG--HPEQEQRYVRDKKTIVPGGDLGVTGHIGWYVPTYFAERHPDVTDWKNLN 145
Query: 133 KYKKELGAKIYGIEPG---NEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRN 189
KY G + + D L + SE A +QI++ +
Sbjct: 146 KYADRFRTPESGGKGQLMDGSPSYVTNDKALVKNLKLDYRVVFAGSEAAQITQIKQFAKE 205
Query: 190 NIPAVFLSWEPHPINSDLNIHYLPGGEE-----------ISGFGEASVYTVVRSDYLDKC 238
P + + P ++ + + + + + + +D+
Sbjct: 206 RKPFLTYWYTPQWLSEKVPMTEVKLPAYEEGCDADPEKVACAYPVTPLQKYLNADFAGHG 265
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+ L+ +++ +NE+ LI K + R + H + WL
Sbjct: 266 GEAADFLERFRWTTEDQNEVSLLIAEQKLSPRDAARKWVDGHESTWRKWL 315
>gi|299822485|ref|ZP_07054371.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, glycine betaine/L-proline-binding protein
[Listeria grayi DSM 20601]
gi|299816014|gb|EFI83252.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, glycine betaine/L-proline-binding protein
[Listeria grayi DSM 20601]
Length = 302
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 37/163 (22%), Positives = 72/163 (44%), Gaps = 2/163 (1%)
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
K++ I GI+ G + I K ++L +S A S + + ++ P V
Sbjct: 36 KQINYTITGIDAGAGIMLSTQNAIKGYKLDKDNWQLQTSSTAAMTSTLEKAIKDKRPIVV 95
Query: 196 LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
W PH + + ++ +L + I G E +++T VR + P+ LL N ++
Sbjct: 96 TGWTPHWMFTKFDLKFLKDPKNIYGKAE-NIHTFVRKGLKKEKPSAYELLDNFNWTSKEM 154
Query: 256 NEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
+E+M + NN +D + + ++ HP+ + W G+ G
Sbjct: 155 SEVMLAV-NNGEDPEKAAKDWIKKHPEKVAEWTKGIKKVSGDP 196
Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 2/101 (1%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYW 83
S P++ W A+T + + +L LGYK I+ + + + S+ D + W
Sbjct: 193 SGDPIKLTYVAWDSEIASTNVVAEVL-RKLGYKPTIQAMEIQPMWASVATDAADGMVAAW 251
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
P + ++ + NL+GAK LAV +
Sbjct: 252 LPKTSGIYYR-DYKDKVEDLGVNLKGAKVGLAVPTYMKNIN 291
>gi|182434873|ref|YP_001822592.1| putative glycine betaine-binding lipoprotein [Streptomyces griseus
subsp. griseus NBRC 13350]
gi|178463389|dbj|BAG17909.1| putative glycine betaine-binding lipoprotein [Streptomyces griseus
subsp. griseus NBRC 13350]
Length = 324
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 50/311 (16%), Positives = 106/311 (34%), Gaps = 27/311 (8%)
Query: 4 ILAVCLFLTTFSISYA---------RDADSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
+ + LTT A V + W A A+ IL+E LG
Sbjct: 12 LASATALLTTAGCGAADMTQQASPFAAPAGVRTVTLSVQSWVGAQANVAVAEQILKEELG 71
Query: 55 YKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
Y+ ++ + +L +D + W ++ E+ +I +
Sbjct: 72 YRVDLVQTDEVPAWDALSQGRVDAILEDWG-HPDQEKLYIDEKKTIVRGGDLGVTGHIGW 130
Query: 115 AVNDVGFA--LGIKSYQDIAKYKKELGAKIYGIEPG---NEGNQRILDMINNNKFSLKGF 169
V + ++++ K+ EL G + + D+ L
Sbjct: 131 YVPKYWADENPEVTDWKNLNKFADELKTAESGGKGQLMDGSPSYVTNDVALVKNLDLDYK 190
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI----------- 218
+ SE A +QI++ + P + ++P + +++ + + E
Sbjct: 191 VVFAGSEAAQITQIQQFAKEKKPFLSYWYQPQWLFNEVPMVEVKLPEYTDACAAKDPADI 250
Query: 219 -SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTML 277
+ + + +D+ ++ S LK +S +NE+ ++I K D Q + +
Sbjct: 251 DCAYPTTPLQKFLNADFAERGGEASAFLKKFHWSEKDQNEVSEMIAAEKLDPQEAAKRWI 310
Query: 278 RTHPDLLKNWL 288
HPD+ + WL
Sbjct: 311 ERHPDVWRKWL 321
>gi|332982737|ref|YP_004464178.1| glycine betaine ABC transporter substrate-binding protein [Mahella
australiensis 50-1 BON]
gi|332700415|gb|AEE97356.1| Substrate-binding region of ABC-type glycine betaine transport
system [Mahella australiensis 50-1 BON]
Length = 307
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 46/300 (15%), Positives = 89/300 (29%), Gaps = 35/300 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--L 61
+L + +T + V +T+ M + ++E K L
Sbjct: 13 MLLILTIITGCKGGGGASSGGGDTVVIGSKNFTEQIIVGNMMADLIEAHTDLNVERKLNL 72
Query: 62 LAVPVTFRSLKNK----GIDIFMGYWYPSLEKFI----------------APYLEEGSIK 101
V F ++K GID++M Y L + Y E+ ++
Sbjct: 73 GGTNVCFEAIKKGGSNNGIDVYMDYTGTGLVDILQMEPTTDPDEAYNTVKKEYKEKWNLV 132
Query: 102 LVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMIN 160
+ Y LAV + A + + K + G E + +++
Sbjct: 133 WLEPWGFNNTYTLAVKEEFAAEH--NINTFSDLGKIADQIVLGCSMEFVERPDGLPGLVD 190
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISG 220
F K + N+ V ++ + N+ L +
Sbjct: 191 KYGFQFKNVK------SMDTGIRYPAIDNDEVQVIDAFATDGLLVSHNLKILED--DKQF 242
Query: 221 FGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
F +VR D LDK P I+ L + + ++ + +D V + L+
Sbjct: 243 FPPYYAAPLVRGDLLDKRPEIADALNKLANAITDEDMQQLNYQVDGEGKDAAKVAKEFLQ 302
>gi|212696466|ref|ZP_03304594.1| hypothetical protein ANHYDRO_01004 [Anaerococcus hydrogenalis DSM
7454]
gi|212676559|gb|EEB36166.1| hypothetical protein ANHYDRO_01004 [Anaerococcus hydrogenalis DSM
7454]
Length = 504
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 29/299 (9%), Positives = 82/299 (27%), Gaps = 33/299 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--L 61
++++ + +S + + A + M ++EE K +K
Sbjct: 211 LMSLIATIIITIMSLFSFGEKDNKLTIAGKLGAEPEILINMYKELIEENSDIKVEVKANF 270
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIA-------------------PYLEEGSIKL 102
+ +LKN ID++ + + ++ +
Sbjct: 271 GKTSFLYEALKNGSIDMYPEFTGTITNSLLKEDVGKISNNPEKVYKKARDKIYDQDKLVY 330
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
+ + Y LA+ + K + + +E N+ + +
Sbjct: 331 LKPSKFQNTYALAIKEDYAKENNIEKISDLKKVENNVIAGFTLE-FNDREDGNKGLKSLY 389
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
+ + + N + + + L + +
Sbjct: 390 GLNFDVKTMEPSLR-------YTAISNGSINLTDVYSTDSQIITNKLRVLEDDKNLF--P 440
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++R + + P + +L+ + K + +M L+ + + V R L+
Sbjct: 441 PYQAAPLLREETIKNHPELKEILEKLSGKITSEEMTKMNYLVDVEGKSAKDVAREYLKD 499
>gi|50954648|ref|YP_061936.1| ABC-type glycine betaine transport, permease protein [Leifsonia
xyli subsp. xyli str. CTCB07]
gi|50951130|gb|AAT88831.1| ABC-type glycine betaine transport, permease protein [Leifsonia
xyli subsp. xyli str. CTCB07]
Length = 571
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 42/281 (14%), Positives = 100/281 (35%), Gaps = 11/281 (3%)
Query: 10 FLTTFSISYARDADSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNIKLLAVPVTF 68
T + + V+ A W + A + + +L+ GY + + F
Sbjct: 295 IAGTAVTAASTAGGGKGTVKVAVFNGWPEGEAASYLWKHVLQRK-GYDVDFEYADAGPAF 353
Query: 69 RSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSY 128
L D+ W P+ + + AK +AVN I S
Sbjct: 354 AGLSTGDYDVAFDGWLPTTHAQYLTKYGAS-LTDLGSWNDEAKLTIAVNKDAP---IDSL 409
Query: 129 QDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQR 188
+A + + G ++ G+EPG + + + L+ + +S A +++ +
Sbjct: 410 DQLAAHASDFGGRLVGVEPGAGLTDLTENTV-IPAYGLQKLDFVTSSTPAMLAELTAAMK 468
Query: 189 NNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI 248
+ W PH + ++ L G E+ ++++ ++++ P ++ ++
Sbjct: 469 SGDDIAVTLWRPHWTYDEFDLKDLKDPRGALGTAES-IHSIASKGFVEEFPEVAGWVRGF 527
Query: 249 KFSVALENEMMKLILNNK---QDRQFVGRTMLRTHPDLLKN 286
+ + L + + N+ QD + + H D +++
Sbjct: 528 RLNSELLYSLENALFNSGSGSQDYDRIVEKWMSKHTDYVES 568
>gi|126739817|ref|ZP_01755508.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Roseobacter sp. SK209-2-6]
gi|126719049|gb|EBA15760.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Roseobacter sp. SK209-2-6]
Length = 318
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 47/319 (14%), Positives = 91/319 (28%), Gaps = 27/319 (8%)
Query: 1 MYKILAVCLFLTTFSISYARDADSC---TPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M K + + A A+ P+R WT +T + IL+ GY+
Sbjct: 1 MLKSTFAAIGTAAVLATGASAAELGDVNKPIRLGLNNWTGHQVSTYVAGEILKAA-GYQV 59
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+ + SL I + W S +A L G+ + + A+ L
Sbjct: 60 EYVNVTNQDFWSSLAAGDIHANVEVWSTSQTAEVAESLASGATMDLGDLELYAQEGLVYP 119
Query: 118 DVGFA--LGIKSYQDIAKYKKELGAKIYGIEP---GNEGNQRILDMINNNKFSLKGFRLI 172
G+ +++ + G + G + L
Sbjct: 120 AHVEELCPGLPNWEALRDCASVFATSETGDQGRLIGYPADWSSPGADRVAGLGLPFTNTP 179
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE---------------- 216
A E +R NN + W+PH + N+ ++
Sbjct: 180 AADENGLTEALRESVENNTAVLATFWQPHWAMLEYNLKFVQLPPAEPACFSDPSWGPNPN 239
Query: 217 --EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGR 274
GF A V + P +L ++ + MM + + + V +
Sbjct: 240 AVNDCGFESARVMKAGWGQLAETWPAAFEILFTFTLNIEDQQPMMGSVDVEGRPVEEVVK 299
Query: 275 TMLRTHPDLLKNWLIGVTT 293
+ + + + L T+
Sbjct: 300 EWMSMNEFVWRPLLDDATS 318
>gi|255030328|ref|ZP_05302279.1| hypothetical protein LmonL_16786 [Listeria monocytogenes LO28]
Length = 258
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 34/167 (20%), Positives = 76/167 (45%), Gaps = 2/167 (1%)
Query: 132 AKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI 191
+++ I GI+ G + I + ++L +S A S +++ ++
Sbjct: 32 KDLGEQINYTITGIDAGAGIMLATQNAIKDYHLDDDNWQLQTSSTAAMTSTLQKAMKDKR 91
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFS 251
P V W PH + + ++ +L + + G E +++T+VR + P+ ++L N ++
Sbjct: 92 PIVVTGWTPHWMFTKFDLKFLDDPKNVYGNAE-NIHTIVRKGLKEDKPSAYQVLDNFFWT 150
Query: 252 VALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
+E+M + N+ D + + ++ +PD + W GV DG +
Sbjct: 151 AEDMSEVMLEV-NDGVDPEEAAKKWIKNNPDKVAKWTDGVEKVDGDE 196
Score = 43.3 bits (100), Expect = 0.044, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYW 83
++ W A+T + + L++ +GYK I+ + + + S+ D + W
Sbjct: 193 DGDEIKLTYVAWDSEIASTNVVAEALKQ-VGYKPTIQAMEIQPMWASVATDAADGMVAAW 251
Query: 84 YPSLEKF 90
P+
Sbjct: 252 LPNTSGI 258
>gi|297201878|ref|ZP_06919275.1| glycine betaine-binding lipoprotein [Streptomyces sviceus ATCC
29083]
gi|197712749|gb|EDY56783.1| glycine betaine-binding lipoprotein [Streptomyces sviceus ATCC
29083]
Length = 315
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 41/314 (13%), Positives = 96/314 (30%), Gaps = 28/314 (8%)
Query: 2 YKILAVCLFLTTFSISYA---------RDADSCTPVRFADTGWTDIAATTAMTSVILEEI 52
+ L A +A V + W A A+ +LE
Sbjct: 4 RTLAVAGSLLLLTGCGAADMTKQASPFANAQGAKSVTLSVQSWVGAQANVAVAQYLLEHK 63
Query: 53 LGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKY 112
LGY+ + + + +L +D + W + Y+++ L +
Sbjct: 64 LGYRVDTVQVDEVPAWDALSQGRVDAILEDWG--HPEQEQRYVKDKKTITAGGGLGVTGH 121
Query: 113 -MLAVNDVGFA--LGIKSYQDIAKYKKELGAKIYGIEPG---NEGNQRILDMINNNKFSL 166
V + +++++ KY +L G + + D L
Sbjct: 122 IGWYVPTYFAKQHPDVTNWKNLNKYASQLRTAESGGKGQLMDGSPSYVTNDKALVKNLDL 181
Query: 167 KGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE--------- 217
+ SE A +Q+++ + P + + P + + + +
Sbjct: 182 DYQVVFAGSEAAQITQMKQFAKEKKPFLTYWYAPQWLFEKVPMTEVKLPAYKEGCDADPA 241
Query: 218 --ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRT 275
+ + + +D+ + LK K++ +N++ +I + K + +
Sbjct: 242 KVACAYPHTPLQKYLNTDFAKSGGKAAAFLKKFKWTTEDQNQVSLMIADQKLTPEEAAKK 301
Query: 276 MLRTHPDLLKNWLI 289
+ +H K WL
Sbjct: 302 WVDSHQSTWKAWLS 315
>gi|52081950|ref|YP_080741.1| glycine betaine/carnitine/choline ABC transporter
osmoprotectant-binding protein [Bacillus licheniformis
ATCC 14580]
gi|52787334|ref|YP_093163.1| periplasmic transport protein OpuCC [Bacillus licheniformis ATCC
14580]
gi|319647813|ref|ZP_08002031.1| OpuCC protein [Bacillus sp. BT1B_CT2]
gi|52005161|gb|AAU25103.1| glycine betaine/carnitine/choline ABC transporter
(osmoprotectant-binding protein) [Bacillus licheniformis
ATCC 14580]
gi|52349836|gb|AAU42470.1| OpuCC [Bacillus licheniformis ATCC 14580]
gi|317390154|gb|EFV70963.1| OpuCC protein [Bacillus sp. BT1B_CT2]
Length = 305
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 37/305 (12%), Positives = 82/305 (26%), Gaps = 33/305 (10%)
Query: 2 YKI--LAVCLFLTTFSISYARDA----DSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
K+ L + + + IS S ++ T+ M S+++E
Sbjct: 4 KKLRRLGAVMLVLSLLISGCALPGLGGASDKTIKIGAQNLTESEILANMISLLIEHDTDL 63
Query: 56 KTNIKL--LAVPVTFRSLKNKGIDIFMGYW---------------YPSLEKFIAPYLEEG 98
T + + V +++ IDI + P I +
Sbjct: 64 NTVLVKNLGSNYVQHQAMLGGDIDISATRYSGTDLTSTLGREAEKDPKKALRIVQQDFQK 123
Query: 99 SIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ G A +Y+ I+ KK+ G++ +
Sbjct: 124 KFNYKWFDSYGFDNTYAFTVTKELAEKGNYETISDLKKDADQLKLGVDNAWLKRKG---- 179
Query: 159 INNNKFSLKGFRLIEASE-LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
+ + + S + +N + L++ ++ L +
Sbjct: 180 -DGYPGFKQEYGFSFGSTFPMQIGLVYDAVKNGKMDIVLAYSTDGRIKAYDLKLLKD--D 236
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
F VV L + P + + + K E+ + ++ V
Sbjct: 237 KRFFPPYDCSPVVPEKVLKEHPELEETINKLIGKIDTETMQELNYEVDGKLKEPSVVAAE 296
Query: 276 MLRTH 280
L+ H
Sbjct: 297 FLKKH 301
>gi|326775391|ref|ZP_08234656.1| ABC-type glycine betaine transport, periplasmic subunit
[Streptomyces cf. griseus XylebKG-1]
gi|326655724|gb|EGE40570.1| ABC-type glycine betaine transport, periplasmic subunit
[Streptomyces cf. griseus XylebKG-1]
Length = 324
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 49/311 (15%), Positives = 106/311 (34%), Gaps = 27/311 (8%)
Query: 4 ILAVCLFLTTFSISYA---------RDADSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
+ + LTT A V + W A A+ +L+E LG
Sbjct: 12 LASATALLTTAGCGAADMTQQASPFAAPAGVRTVTLSVQSWVGAQANVAVAEQLLKEELG 71
Query: 55 YKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
Y+ ++ + +L +D + W ++ E+ +I +
Sbjct: 72 YRVDLVQTDEVPAWDALSQGRVDAILEDWG-HPDQEKLYIDEKKTIVRGGDLGVTGHIGW 130
Query: 115 AVNDVGFA--LGIKSYQDIAKYKKELGAKIYGIEPG---NEGNQRILDMINNNKFSLKGF 169
V + ++++ K+ EL G + + D+ L
Sbjct: 131 YVPKYWADENPEVTDWKNLNKFADELKTAESGGKGQLMDGSPSYVTNDVALVKNLDLDYK 190
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI----------- 218
+ SE A +QI++ + P + ++P + +++ + + E
Sbjct: 191 VVFAGSEAAQITQIQQFAKEKKPFLSYWYQPQWLFNEVPMVEVKLPEYTDACAAKDPADI 250
Query: 219 -SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTML 277
+ + + +D+ ++ S LK +S +NE+ ++I K D Q + +
Sbjct: 251 DCAYPTTPLQKFLNADFAERGGEASAFLKKFHWSEKDQNEVSEMIAAEKLDPQEAAKRWI 310
Query: 278 RTHPDLLKNWL 288
HPD+ + WL
Sbjct: 311 ERHPDVWRKWL 321
>gi|222102605|ref|YP_002539644.1| ABC transporter substrate binding protein (glycine-betaine)
[Agrobacterium vitis S4]
gi|221739206|gb|ACM39939.1| ABC transporter substrate binding protein (glycine-betaine)
[Agrobacterium vitis S4]
Length = 283
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 45/288 (15%), Positives = 103/288 (35%), Gaps = 12/288 (4%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M + ++ V W D+ T +T +LE+ GY +
Sbjct: 1 MKFLWKALCAAAMVGMTALSAHAEEKTVTIGTMSWEDLTPITGITKKVLEDS-GYTVKVV 59
Query: 61 LLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ + + +L + I + + + ++ ++ G +AV
Sbjct: 60 PFSEWGIAYAALSKGDVQILASQTDYVAQDYWNK--NKKRLEKISPVSHGLYQAIAVPKY 117
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
I S + + + + G KI GIEPG+ + + + + L +L+E S A
Sbjct: 118 VP---IDSVEQLNENADKFGGKIIGIEPGSGLMKDAANAVKDYGLKL---QLVEGSTAAM 171
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+ ++ WEP + ++ +L + + S Y + + + + P
Sbjct: 172 TAALKSASDRKEWIAVTIWEPSWMAQKYDVKFLKDPKGVFP-PAQSYYWIGQKGFSAQNP 230
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
+ ++ ++ +A + + N+ + ++ +H DLLK W
Sbjct: 231 HAREVIASVYVPLADIAAINSAV-NDGKTMDEAIKSWTDSHADLLKRW 277
>gi|302335424|ref|YP_003800631.1| Substrate-binding region of ABC-type glycine betaine transport
system [Olsenella uli DSM 7084]
gi|301319264|gb|ADK67751.1| Substrate-binding region of ABC-type glycine betaine transport
system [Olsenella uli DSM 7084]
Length = 521
Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 26/276 (9%), Positives = 72/276 (26%), Gaps = 31/276 (11%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL---LAVPVTFRSLKNKGIDIFMG 81
+ A T+ M ++E+ + + ++++ D++
Sbjct: 251 AEVIHVATKPMTEQYIMGYMLKDLIEQDTDLTVELTVGVGGGTSNIEPAMESGEFDLYPE 310
Query: 82 YWYPSLEKFIAP---------------YLEEGSIKLVAENLQGAKYMLAVNDVGFALGIK 126
Y + + Y ++ ++ V + L V
Sbjct: 311 YTGTAWSAVLNKGDTYSEDLFGQLRQAYEDQLGLEWVGMYGFNNTFGLVVRREVAERY-- 368
Query: 127 SYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
+ + ++ +G E E + + ++ +
Sbjct: 369 DLRTYSDLQRVASQLSFGAEYDFFEREDGYQALCDAYGLDFG------STMDLDIGLKYQ 422
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
V + + S + L + + VVR + L+ P + +L
Sbjct: 423 ALAEGQIDVMVIFTTDGQLSATDAVVLEDDKGLF--PSYLCGNVVRRETLESHPELRAVL 480
Query: 246 KNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+ + + +M + + + V R L
Sbjct: 481 ERLEGTVTDDDMAKMNYSVETEGRAPEDVAREYLEQ 516
>gi|330810504|ref|YP_004354966.1| glycine betaine ABC transporter periplasmic protein [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|327378612|gb|AEA69962.1| Glycine betaine ABC transporter, periplasmic component [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 282
Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 48/288 (16%), Positives = 100/288 (34%), Gaps = 12/288 (4%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M KI + + + W D+ T +T +LE+ GY +
Sbjct: 1 MKKIWKAVCAVAVAGMMSLPVHAEEKTITMGTMTWEDLTPITGITKKVLEDS-GYTVKVV 59
Query: 61 LLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ + + +L + + + + + I+ ++ G LAV
Sbjct: 60 EFSEWGIAYAALTKGDVQVLASQTDYAANDYWNK--NKNKIEKLSPVSFGLYQGLAVPSY 117
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
I S ++ +E G KI GIEPG+ +++ L +L+E S A
Sbjct: 118 V---DIDSIDELNARAEEFGGKIIGIEPGSGLMSDANNVVKAYDLKL---KLVEGSTTAM 171
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+ ++ + V W+P + + +L + I Y + + + P
Sbjct: 172 TAALKSAVDRDEKIVVTVWDPSWMTKKFGLKFLKDPKGIFP-PLQGYYWIGHKGFAEGNP 230
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
L+ ++ +A M + + + + + +H +LLK W
Sbjct: 231 RARELMASVYVPIADITAMNAEV-KDGKTMEQAIKGWTDSHAELLKRW 277
>gi|242399863|ref|YP_002995288.1| Osmoprotection protein (proX) [Thermococcus sibiricus MM 739]
gi|242266257|gb|ACS90939.1| Osmoprotection protein (proX) [Thermococcus sibiricus MM 739]
Length = 300
Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 36/301 (11%), Positives = 87/301 (28%), Gaps = 33/301 (10%)
Query: 1 MYKILAVC---LFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M K+ A+ L L +F + + + + + M +++LEE GYK
Sbjct: 1 MQKLTALIIGSLVLLSFISGCISEKEEVPTIVIGSKPFNEQYILAHMIALLLEEN-GYKA 59
Query: 58 NIKL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIK-------------- 101
+K V + +LK I +++ Y + + E
Sbjct: 60 EVKEGLGGTLVNYEALKKGQIHVYVEYTGTAYNNILKLEPPEKWSPEYVYEKSKEEMLKR 119
Query: 102 --LVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYG-IEPGNEGNQRILDM 158
++ G + ++ + + ++ G + +
Sbjct: 120 DGVLTIVKLGFRDDYSIAVKKEFAEKNNLEKLSDLAPYAAEMTLGTDPEFATRPDGLPRI 179
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
F+ + +E + + +N ++ + L +
Sbjct: 180 KEVYGFTFGDVKQMEP------TLMYEAIKNGQVDAISAYTTDARVDLFGLKILEDDKGA 233
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTM 276
+V+ ++ DK P + LK ++ + K+D + + R
Sbjct: 234 L--PPYDAVILVKKEFADKYPGVVEALKKLEGLIDTDTMRALNYKYDVEKKDAREIAREF 291
Query: 277 L 277
L
Sbjct: 292 L 292
>gi|167041610|gb|ABZ06357.1| putative Substrate binding domain of ABC-type glycine betaine
transport system [uncultured marine microorganism
HF4000_009A22]
Length = 316
Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 41/287 (14%), Positives = 87/287 (30%), Gaps = 24/287 (8%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGY 82
DS P R W+ + ILE+ +G + S++ IDI
Sbjct: 28 DSKKPTRIPIHNWSSQVVMAYVIGGILED-MGGNVEYVPADSQAVYESIRIGDIDISQEV 86
Query: 83 WYPSLEKFIAPYLEEGSIKLVAEN----LQGAKYMLAVNDVGFALGIKSYQDIA--KYKK 136
W + K ++G + ++ L+ Y V + G G+ S++ + K
Sbjct: 87 WQSAFGKSFDTARDKGGLLDWGDHVARSLEDMGYPNWVAEKGLCPGLPSWEALKSADCAK 146
Query: 137 ELGAKIYGIEPGN------EGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
G + + + S A ++++ ++
Sbjct: 147 NFATPDSGGKGRWLEGPQTWHQDLMPQRMTALGLDDLWVVKFAGSADALWAELAAAEKEG 206
Query: 191 IPAVFLSWEP-----------HPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+ +W P GG+ G + + V + P
Sbjct: 207 RGTIIFNWTPNFTDGAGFTFIDFPPYTDGCRPADGGDGKCGSPDGYLKKAVNEKWTKTHP 266
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKN 286
+ + + K + F+ M + +K + G+T L+ + + K
Sbjct: 267 DAAAMFKKLAFTTGQIGAMAAYVDVDKMSHEDAGKTWLKKNKKVWKA 313
>gi|168185827|ref|ZP_02620462.1| proline/glycine betaine ABC-type transport system, permease
component fused to periplasmic component [Clostridium
botulinum C str. Eklund]
gi|169295930|gb|EDS78063.1| proline/glycine betaine ABC-type transport system, permease
component fused to periplasmic component [Clostridium
botulinum C str. Eklund]
Length = 528
Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 49/304 (16%), Positives = 97/304 (31%), Gaps = 38/304 (12%)
Query: 3 KILAVCLFLTTFSISYARDA----DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
K +A+ ++ A D + +T+ M + +LE+ K
Sbjct: 231 KKIAITTVAIICTVLGGTLAYRVYDDNRSIVVGSKNYTEELILGNMYATLLEKNTELKVK 290
Query: 59 ---IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFI----------------APYLEEGS 99
I L VTF++L++ ID+++ Y +L + + +E
Sbjct: 291 RTGINLGGAGVTFQALRSGDIDLYVEYTGVALVNIMGRKAVNDPEKTFKIVKDYFNKEYD 350
Query: 100 IKLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
I + + Y+LAV +K+ D+AK L D
Sbjct: 351 ITWMDQMGYNNTYVLAVTKETAKKYGLKTLSDLAKVSNNLVL---------GCTMEFSDR 401
Query: 159 INNNKFSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
+ + + + + + V ++ + N+ L +
Sbjct: 402 QDGYLGMKDFYNMKVKDVKSLDGSLRYSALESKEADVIDAFATDGLLKVYNLARLED--D 459
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
F ++R+D L K P + ++L + K S E+ + QD + V
Sbjct: 460 KHFFPPYYAAPIIRNDVLKKHPELKKVLNMLAGKVSEDDMTELNYKVDKLGQDPRKVADD 519
Query: 276 MLRT 279
LR
Sbjct: 520 FLRE 523
>gi|219668827|ref|YP_002459262.1| substrate-binding region of ABC-type glycine betaine transporter
[Desulfitobacterium hafniense DCB-2]
gi|219539087|gb|ACL20826.1| Substrate-binding region of ABC-type glycine betaine transport
system [Desulfitobacterium hafniense DCB-2]
Length = 317
Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 41/300 (13%), Positives = 82/300 (27%), Gaps = 33/300 (11%)
Query: 1 MYKIL----AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
M K L V + + + A S + +T+ M + ++E
Sbjct: 20 MKKNLMMWSLVGVLMLALVGCSSSAAKSGESITVGSKNFTENIIIAHMMADLVEAHTDLT 79
Query: 57 TNIK--LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPY--------------LEEGSI 100
+ K L V + +L+N I ++ Y + + E ++
Sbjct: 80 VDRKVNLGGSNVAWTALENNDIQMYPDYTGTIVANYYQEATGTSEETMAKTLELTAEDNL 139
Query: 101 KLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN 160
K + Y LAV + + + + G E D +
Sbjct: 140 KALGSLGFNNTYTLAVTKETAQKY--NLKTYSDLVGVSEQLVLGCEFEF------KDRPD 191
Query: 161 NNKFSLKGFRLIEASELASFSQIR-RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
+ + I R V ++ ++ L E
Sbjct: 192 GYPGLQDTYNMNFKEVKGMDHGIMFRSLVEGEVDVVDAYATDGQIKVFDLVILEDDREFF 251
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+VR D LD+ P + +L + + + A E+ + + V L
Sbjct: 252 --PPYDCLPLVRQDTLDQYPELEEILNKLAGQINEADMQELNAKVDDQGMKEDVVAHDFL 309
>gi|228473306|ref|ZP_04058060.1| glycine betaine transport system permease protein [Capnocytophaga
gingivalis ATCC 33624]
gi|228275208|gb|EEK14006.1| glycine betaine transport system permease protein [Capnocytophaga
gingivalis ATCC 33624]
Length = 513
Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 37/296 (12%), Positives = 80/296 (27%), Gaps = 31/296 (10%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL- 61
K++ V + ++ + + A T+ M ++++E+ G +
Sbjct: 218 KLVGVGVLALLITLFFVLSPKKTKDIHIATKPMTESYILGQMLALLIEQDTGLSVRLTNG 277
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP---------------YLEEGSIKLVA 104
++ G DI+ Y S E + Y ++ ++
Sbjct: 278 VGGGTSNIHPAMLRGGFDIYPEYTGTSWEAVLKHKDPYQDDKFSILEDAYKKQYGLEWAN 337
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNK 163
Y LAV+ + K I+G E E +
Sbjct: 338 LYGFNNTYGLAVSKQVAQQY--QLKTFTDLAKVSHQLIFGAEYDFFEREDGYKQLQEVYG 395
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+ R+ + + + L + +
Sbjct: 396 IHFGRV------IDMDIGLKYQAIRDKKIDAMVVFTTDGQLFVSEVVVLQDDRNL--YPS 447
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
TVVR++ L P + LK + A + L+ ++ + V + L
Sbjct: 448 YKAGTVVRTELLTTYPALRTTLKKLNNLIDDATMAHLNFLVETERKRPEEVAKNYL 503
>gi|325846724|ref|ZP_08169639.1| ABC transporter, substrate-binding protein, QAT family
[Anaerococcus hydrogenalis ACS-025-V-Sch4]
gi|325481482|gb|EGC84523.1| ABC transporter, substrate-binding protein, QAT family
[Anaerococcus hydrogenalis ACS-025-V-Sch4]
Length = 503
Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 29/299 (9%), Positives = 82/299 (27%), Gaps = 33/299 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--L 61
++++ + + +S + A + M ++EE K +K
Sbjct: 210 LMSLIVTIIITIMSLFSFGKKDNKLTIAGKLGAEPEILINMYKELIEENSDIKVEVKANF 269
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP-------------------YLEEGSIKL 102
+ +LKN ID++ + + ++ +
Sbjct: 270 GKTSFLYEALKNGSIDMYPEFTGTITNSLLKEDVGKISNNPEKVYKKARDMIYDQDKLVY 329
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
+ + Y LA+ + K + + +E N+ + +
Sbjct: 330 LKPSKFQNTYALAIKEDYAKENNIEKISDLKKVENNVIAGFTLE-FNDREDGNKGLKSLY 388
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
+ + + N + + + L + +
Sbjct: 389 GLNFDVKTMEPSLR-------YTAISNGSINLTDVYSTDSQIITNKLRVLEDDKNLF--P 439
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++R + + P + +L+ + K + +M L+ + + V R L+
Sbjct: 440 PYQAAPLLREETIKNHPELKEILEKLSGKITSEEMTKMNYLVDVEGKSAKDVAREYLKD 498
>gi|262039220|ref|ZP_06012538.1| glycine betaine/choline ABC transporter, ATP-binding protein
[Leptotrichia goodfellowii F0264]
gi|261746714|gb|EEY34235.1| glycine betaine/choline ABC transporter, ATP-binding protein
[Leptotrichia goodfellowii F0264]
Length = 505
Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 42/305 (13%), Positives = 92/305 (30%), Gaps = 36/305 (11%)
Query: 2 YKILAVCLFLTTFSISYARDADS---CTPVRFADTGWTDIAATTAMTSVILEEIL-GYKT 57
K L T + AD + A T+ M +++EE +
Sbjct: 207 KKTLIYMFAAMTLFFAGNFGADKMMYKDKLVIAGKLGTEPEILINMYKILIEENMKNIHV 266
Query: 58 NIKLL--AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL-----------------EEG 98
+K F +LK+K +DI+ + ++ F+ E+
Sbjct: 267 ELKPGFGKTSFVFNALKSKEVDIYPEFTGTAVFTFLKEKPVSNNEIEVYNQAKKGLAEKY 326
Query: 99 SIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
++ L+ Y LAV K + + + D
Sbjct: 327 NMILLEPMKYNNTYALAVPRKFAEDNNL--------MKISDLEKVKDKIKAGFTREFNDR 378
Query: 159 INNNKFSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
+ K K + ++ +N + ++ ++ L +
Sbjct: 379 EDGYKGLKKLYNFEIPDVKELEPKLRYTAIQNGEINLIDAYSTDSELEKYDLAVLEDDRK 438
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRT 275
+ ++R + L+K P + ++L +K + A EM + N + + V +
Sbjct: 439 LF--PPYQGAPLLRKEILEKYPELEKILGMLKGRITDADMREMNYEVGVNGKRAEDVAKE 496
Query: 276 MLRTH 280
L+ +
Sbjct: 497 YLKKN 501
>gi|303231586|ref|ZP_07318311.1| ABC transporter, substrate-binding protein, QAT family [Veillonella
atypica ACS-049-V-Sch6]
gi|302513749|gb|EFL55766.1| ABC transporter, substrate-binding protein, QAT family [Veillonella
atypica ACS-049-V-Sch6]
Length = 511
Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 36/299 (12%), Positives = 72/299 (24%), Gaps = 32/299 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADS-CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+I V + I + A T+ M +++E+ +
Sbjct: 217 KRIGIVASIVIISGIGVFMWPSQQSDVIHVATKPMTEQLILGDMLKLLIEQDTDLTVEVT 276
Query: 61 L---LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP---------------YLEEGSIKL 102
++++ DI+ Y + Y + K
Sbjct: 277 AGVGGGTSNIQPAMESGQFDIYPEYTGTGWNAVLKRDTQYSENLFDELQRAYEDTYQFKW 336
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINN 161
V Y +AV + + + + I G E +
Sbjct: 337 VGMYGFNNTYGMAVRKDIANKY--NLKTYSDLARVSSQLILGGEYDFFGRQDGYSGLQRV 394
Query: 162 NKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
K + + + + S +I L + +
Sbjct: 395 YGMDFKDTK------DMDIGLKYQAIESGHVDAMPIFTTDGQLSHASIVVLED--DKHLY 446
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
VVR D L K P + +L + + + M + + Q V LR
Sbjct: 447 PSYVCGNVVRIDVLKKHPELESVLLKLTNTITDQDMSYMNYEVESEGQKPHDVAERYLR 505
>gi|229085221|ref|ZP_04217464.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus
Rock3-44]
gi|228698088|gb|EEL50830.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus
Rock3-44]
Length = 503
Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 34/278 (12%), Positives = 77/278 (27%), Gaps = 32/278 (11%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGIDIFMG 81
+ A ++ M ++E+ +K F +LK+ IDI+
Sbjct: 231 QKKDIVIAGKLGSEPEILIQMYKQLIEQDTDLDVELKPGLGKTAFVFEALKSGEIDIYPE 290
Query: 82 YWYPSLEKFIAP-----------------YLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
+ +L F+ ++ ++ ++ Y LA+
Sbjct: 291 FSGTALSTFVKEDPKSTNRQEVYEQARQGMEKKYNMVMLQPMEYNNTYTLAMPKNVAEQY 350
Query: 125 IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI- 183
K + D + K K + ++ ++
Sbjct: 351 --------NVKTISDLRNVAANVKAGFTLEFADREDGYKGIQKLYNFQFSNVKTMEPKLR 402
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
+ V ++ + L + + ++R + LDK P + +
Sbjct: 403 YSAIESGDVTVIDAYSTDSELEQYGLQVLEDDKGLF--PPYQGAPLLRKETLDKYPELEK 460
Query: 244 LLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
L + K S +M + N + + V R L
Sbjct: 461 TLNKLAGKISDEDMRKMNYEVNVNGESAEKVARQFLEK 498
>gi|257467783|ref|ZP_05631879.1| substrate-binding region of ABC-type glycine betaine transport
system [Fusobacterium ulcerans ATCC 49185]
gi|317062075|ref|ZP_07926560.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
gi|313687751|gb|EFS24586.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
Length = 523
Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 41/306 (13%), Positives = 97/306 (31%), Gaps = 37/306 (12%)
Query: 2 YKILAVCLFLTTFSISYARD------ADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
+ILAV +F+ F S + +T+ + +V++EE
Sbjct: 224 KRILAVAMFVGIFLTVIFSGMVTMYKPSSEKVIVMGSKEFTEGEILANVMAVMIEEKTDI 283
Query: 56 KTNIKL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFI----------------APYLEE 97
+ + + F +LK+K ID+++ Y + E+
Sbjct: 284 SVDRRFALGGTQICFNALKSKEIDMYVDYTGTVYGDTLKYPPIQDMEEVYNTVKKDMKEK 343
Query: 98 GSIKLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
+I+++ + Y LAV +K+ D+ K + +
Sbjct: 344 YNIEVLQQLGFNNTYALAVRKDTAEKYNLKTISDLEK--AARNLTLSASLEFLNREDCFV 401
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ K + I+ S N V + + L++ L
Sbjct: 402 GLNKKYKLDFRKIIGIDGSSK------YLALTNKESDVIDVYTTDALLQKLDLVVLED-- 453
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGR 274
+ F +VR + ++K P I +++ ++ + + + + + N + +
Sbjct: 454 DRHFFPPYYAIPLVREETIEKYPEIVPIIEELQNVLNDTVISSLNYKVENLGKKPKEAAL 513
Query: 275 TMLRTH 280
+ +
Sbjct: 514 EFIEEY 519
>gi|126737510|ref|ZP_01753240.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Roseobacter sp. SK209-2-6]
gi|126720903|gb|EBA17607.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Roseobacter sp. SK209-2-6]
Length = 296
Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 39/293 (13%), Positives = 84/293 (28%), Gaps = 30/293 (10%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWY 84
V W + T + V LE+ LG ++ P+ F ++ + + + W
Sbjct: 2 AQDVVIGVPNWASVRGTAHILKVALEDNLGLSVGLQNGTNPIIFEAMDSGAMHVHPEVWL 61
Query: 85 PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI---KSYQDIAKYKKELGAK 141
P+ + ++ + N + + V S
Sbjct: 62 PNQQNLHDTFVTGKGSVALNPNAVLSDQHICVTKDTQERTGISALSDLTDPDMAANFDTD 121
Query: 142 IYGIEPGN----EGNQRILDMINNNKFSLKG-FRLIEASELASFSQIRRDQRNNIPAVFL 196
G ++ I + L+E E + +Q+ VF
Sbjct: 122 GDGRGEVWIGGAGWASTNVEKIRAKSYGYSETMNLMEMDETLALAQVDNAVAQGQNIVFY 181
Query: 197 SWEPHPINSDLNIHYLPGGEEI----------------------SGFGEASVYTVVRSDY 234
+ PH + S ++ L + + A ++ S
Sbjct: 182 CYTPHHMFSLYDLVPLSEPAYDAAEWDVKQPTDDPNWLENSKAGTAWDAAKLHVFYASGL 241
Query: 235 LDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
+ P + +L + + N ++ + + QD R + H DL+ +W
Sbjct: 242 AESQPEAAAMLGKVALTTEQVNAVVYALSVDGQDPAEFARKWVDEHSDLVDSW 294
>gi|302544622|ref|ZP_07296964.1| putative glycine betaine-binding lipoprotein [Streptomyces
hygroscopicus ATCC 53653]
gi|302462240|gb|EFL25333.1| putative glycine betaine-binding lipoprotein [Streptomyces
himastatinicus ATCC 53653]
Length = 329
Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 44/318 (13%), Positives = 102/318 (32%), Gaps = 35/318 (11%)
Query: 4 ILAVCLFLTTFSISYARDAD------------SCTPVRFADTGWTDIAATTAMTSVILEE 51
++A + + AD V + W A A+ +LE
Sbjct: 13 LMAATGVTALLTATGCGAADMSKQSSPYANVGGAKSVTLSVQSWVGAQANVAVAQYLLEH 72
Query: 52 ILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAK 111
LGY + + + +L +D + W + Y+++ L
Sbjct: 73 ELGYHVDTVQVDEIPAWDALSQGRVDAILEDWG--HPEQEQRYVKDKKTIASGGGLGVTG 130
Query: 112 Y-MLAVNDVGFA--LGIKSYQDIAKYKKELGAKIYGIEPG---NEGNQRILDMINNNKFS 165
+ V + +++++ KY K G + + D
Sbjct: 131 HIGWWVPKYFADKHPDVLNWKNLNKYAKTFKTAESGGKGQLLDGSPSYVTNDKALVKNLD 190
Query: 166 LKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI------- 218
L + SE A +Q+++ + P + +EP + + + + + +
Sbjct: 191 LNYQIVFAGSESAQITQLKQFAKQKKPFLSYWYEPQWLFNQVPMEEVKLPKYTDKCASKG 250
Query: 219 --------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQ 270
+ + + +D+ + + LK ++ +N++ +LI ++ Q
Sbjct: 251 EKDPDSIDCAYPTTPLQKYLNADFAKEGGKAAAFLKKFHWTKKDQNQVSELIASDGMSAQ 310
Query: 271 FVGRTMLRTHPDLLKNWL 288
++ HPD+ K WL
Sbjct: 311 DAAAKWVKAHPDVWKPWL 328
>gi|299822924|ref|ZP_07054810.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Listeria grayi DSM 20601]
gi|299816453|gb|EFI83691.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Listeria grayi DSM 20601]
Length = 308
Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/302 (9%), Positives = 81/302 (26%), Gaps = 30/302 (9%)
Query: 1 MYKILAVCLFLTTFSISYAR---DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
+ + + + + + S ++ T+ T + S ++E K
Sbjct: 4 IKRSIIPIMLIAVLLTGCSLPGLGGGSKDTIKVGAMSTTESQIITNILSQLIEHDSDLKV 63
Query: 58 NIKLLAVPVTFRSLK--NKGIDIFMGYWYPSLEKFI---------------APYLEEGSI 100
+I + + IDI + + + +E
Sbjct: 64 DIVNNLGSSIVQQQAMSSGDIDISATRYTGTDIAALGLEPISDPKKALAAVKKGFKERHQ 123
Query: 101 KLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN 160
Y V + ++++ +K + G++ +
Sbjct: 124 TWFDSYGFANTYAFLVRKDTAEKY--NLKNVSDMQKHQSDLVAGVDNSWIDRKGDGYQGF 181
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISG 220
+ +++ R+ I +NN V L + ++ L +
Sbjct: 182 SKTYNISFKRIFP----MQIGLIYTALKNNQMDVALGYSTDGRIPTYHLKMLND--DKHF 235
Query: 221 FGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
F + L K P +++++ + K S + ++ V + L
Sbjct: 236 FPPYDASAMASDKILKKHPELTKIINKLKGKISTEEMQRLNYEADGKLKEPSVVAKEFLE 295
Query: 279 TH 280
+
Sbjct: 296 KN 297
>gi|153931313|ref|YP_001383976.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Clostridium botulinum
A str. ATCC 19397]
gi|153935827|ref|YP_001387520.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Clostridium botulinum
A str. Hall]
gi|152927357|gb|ABS32857.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Clostridium botulinum
A str. ATCC 19397]
gi|152931741|gb|ABS37240.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Clostridium botulinum
A str. Hall]
Length = 527
Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats.
Identities = 42/298 (14%), Positives = 93/298 (31%), Gaps = 34/298 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
IL V + L D V +T+ + +++ KL
Sbjct: 237 ILGVLIVLALIVPKLIGLGD--KKVVIGSKNFTEQIILGNILEELIDNKTDIDVETKLNL 294
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFI-----------------APYLEEGSIKLVA 104
V+F +LK GID+++ Y + + + E+ I+++
Sbjct: 295 GGTQVSFNALKTGGIDMYVEYTGTAYGNMLNIKKPNRDRQAVYNTVKKEFKEKFGIEVLN 354
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYG-IEPGNEGNQRILDMINNNK 163
Y++A + + + I G I+ +
Sbjct: 355 PIGFNNTYVMATTKEIAQKY--NLKTTSDLANVSSKMILGPTIEFANREDGIIGLNKAYN 412
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+ K + I+ + NN + ++ + N+ L + F +
Sbjct: 413 MNFKAVKPIDG------GLRYKALVNNETQIIDAFTTDGLIEQFNLVLLED--DKHFFPD 464
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+V+ + L K P + +L + K + ++ + NK+D + V + L+
Sbjct: 465 YYAVPIVKEETLKKFPELKEVLGALDGKITDEKMRKLNYEVDVNKRDPKEVAKEFLQK 522
>gi|261418629|ref|YP_003252311.1| glycine/betaine ABC transporter substrate-binding protein
[Geobacillus sp. Y412MC61]
gi|319765445|ref|YP_004130946.1| substrate-binding region of ABC-type glycine betaine transporter
[Geobacillus sp. Y412MC52]
gi|261375086|gb|ACX77829.1| Substrate-binding region of ABC-type glycine betaine transport
system [Geobacillus sp. Y412MC61]
gi|317110311|gb|ADU92803.1| Substrate-binding region of ABC-type glycine betaine transport
system [Geobacillus sp. Y412MC52]
Length = 300
Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats.
Identities = 41/302 (13%), Positives = 97/302 (32%), Gaps = 35/302 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M +LAV L + + +D+ + + +T+ T + + ++ +K
Sbjct: 6 MMSLLAVGLVFGL--AACSGTSDAKGKIVISGKKFTEQVILTHLLAEYVKANTDLDVEVK 63
Query: 61 --LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP------------------YLEEGSI 100
L + ++++N +D+++ Y + Y E+ +I
Sbjct: 64 DSLGGAFMLQQAIENGDVDMYVEYTGTGYLNILKQPYDPAKTPEQIYNETKKLYKEKYNI 123
Query: 101 KLVAENLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI 159
+ Y LA+ G+K+Y D+AK+ E + ++
Sbjct: 124 AWLKPLGFNNTYALAMRRDLAEKLGVKTYSDLAKH--SSSLTFGSDAEFFERSDGYDGLV 181
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
+ F K I+ +N+ V ++ ++ L +
Sbjct: 182 DTYGFQFKKKVTIDPDLQ------YEAAKNSEIDVITAYTTDARIKKYDLVVLKD--DKQ 233
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
F ++R + LD P + + L + + E+ + + + V L
Sbjct: 234 YFPPYHAVPIIRQEVLDANPGLEKKLNKLANILTDEKMMELNGQVNLEGKQPREVALDFL 293
Query: 278 RT 279
+
Sbjct: 294 KA 295
>gi|332967758|gb|EGK06864.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Desmospora sp. 8437]
Length = 310
Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats.
Identities = 40/300 (13%), Positives = 89/300 (29%), Gaps = 28/300 (9%)
Query: 3 KILAVCLFLTTFSISYARDADSC---TPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
++L V + + + S V+ T+ A + + +++E+ K +
Sbjct: 7 RLLIVSVLFMSLVSGCSLPGLSGPSHNTVKIGTLNTTESAIVSHIVRLMIEKETHLKVEM 66
Query: 60 KL--LAVPVTFRSLKNKGIDIFMG-YWYPSLEKFIAPYLEEG--------------SIKL 102
+ V ++L N +DI Y L +A E+
Sbjct: 67 IENLGSSTVQHQALTNGDVDITPTRYTGTDLTGALAMEPEKDPEKALKQVQKEFGKRFDQ 126
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
+ G A ++ + ++ ++ G++ + +
Sbjct: 127 TWFDSYGFANSYAFTVTRKTAEKENLKTVSDLRRVASKLSLGVDSSWLKRKGDGYVGFVK 186
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
+ K R + + + V L++ ++ L + F
Sbjct: 187 TYGFKFSRTFP----MQIGLVYQAVGSGKMDVVLAYTTDGRLKAFDLVALED--DKQFFP 240
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
V R+D L K P I +L+ + K E+ N ++ V + L H
Sbjct: 241 PYDASPVARNDVLKKHPKIRDILERLAGKIDTDTMLELNYEADVNMKEPATVAKEFLEKH 300
>gi|320529045|ref|ZP_08030137.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Selenomonas artemidis F0399]
gi|320138675|gb|EFW30565.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Selenomonas artemidis F0399]
Length = 515
Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats.
Identities = 32/294 (10%), Positives = 74/294 (25%), Gaps = 31/294 (10%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL---L 62
+ +F+ + +R A T+ M +++E+ +
Sbjct: 226 GLLVFIGLAGGVLYGMFGTKDVIRIATKPMTEQLVMGEMLKILIEQDTNLSVRLTPGVGG 285
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP---------------YLEEGSIKLVAENL 107
++++ D++ Y + Y E ++ +
Sbjct: 286 GTSNIQPAMESGDFDLYPEYTGTGWNMVLKEKRAYDERFFPSLTAAYRERYHMRWIGMYG 345
Query: 108 QGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFSL 166
+ +AV + + A +G E E + S
Sbjct: 346 FNDTFGIAVRRDIAKQY--GLRTYSDLVNAAPALTFGAEYDFFEREDGYAALCRAYGLSF 403
Query: 167 KGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV 226
+ R N V + + + L
Sbjct: 404 ------ARTMDLDIGLKYRALENGQIDVMTIFTTDGQLAASDAVVLQDDRGFF--PSYRC 455
Query: 227 YTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
VVR + L P ++ L+ + + A M + + ++ + V LR
Sbjct: 456 GNVVREEVLTAHPELADTLEKLTDTITDAEMARMNYAVESAGREPRAVAEEHLR 509
>gi|113475160|ref|YP_721221.1| glycine betaine transporter periplasmic subunit [Trichodesmium
erythraeum IMS101]
gi|110166208|gb|ABG50748.1| Substrate-binding region of ABC-type glycine betaine transport
system [Trichodesmium erythraeum IMS101]
Length = 338
Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats.
Identities = 45/333 (13%), Positives = 100/333 (30%), Gaps = 46/333 (13%)
Query: 1 MYK-----ILAVCLFLTTFSISYARDADSCTPVRFADT---GWTDIAATTAMTSVILEEI 52
M K IL + + + + + V + GW + T + ++ L++
Sbjct: 1 MKKTPLKIILGTIITSLLIIFTSCQQVPNPSSVIISSAYNSGWIEELFQTEIVNIGLKQ- 59
Query: 53 LGYKT-NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAK 111
LGYK K PV + S+ N ++ Y+ P EKF E ++ V K
Sbjct: 60 LGYKVNKPKQSDYPVIYISIANGDLEYSTVYYQPGHEKFFTNAGGEKKLEGVGFLTPPGK 119
Query: 112 YMLAVNDVGFALGIKSY---------QDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
++ + + K A + G PG I +
Sbjct: 120 QGYQIDKRTADKYNITNLKQLKDPEIAKLFDSDKNGKANLVGCNPGWACELNIDHQLEKY 179
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGE-- 216
+ + + ++ ++ PH I++ ++ +L
Sbjct: 180 ELEDT-VEHNSGQYTVLLADAITRYKKGESILYYAYNPHWISAVLKPGEDVVWLTVPFTS 238
Query: 217 -----------------EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMM 259
+ GF + V +++ P + + ++ +A N
Sbjct: 239 LPNNMASLSEKDTSVDGKNLGFPRSKQSIVANKKFIESNPVAKKWFELVEIPIADMNRES 298
Query: 260 KLILNNKQDRQFV---GRTMLRTHPDLLKNWLI 289
I + + + + ++ + + WL
Sbjct: 299 LRIKEGEDKEEDILRHAQEWVKNNQEKYDTWLK 331
>gi|257869324|ref|ZP_05648977.1| glycine betaine transporter [Enterococcus gallinarum EG2]
gi|257803488|gb|EEV32310.1| glycine betaine transporter [Enterococcus gallinarum EG2]
Length = 514
Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats.
Identities = 35/307 (11%), Positives = 91/307 (29%), Gaps = 37/307 (12%)
Query: 1 MYKILAVC--LFLTTFSISYAR-DADSCTPVRFADTGWTDIAATTAMTSVILEEI---LG 54
M L +FL I +A+ + S V A ++ M ++EE L
Sbjct: 209 MKTTLISLGVIFLGIGGILFAQYNPISNKTVTIAGKLGSEPDILINMYQAVIEEEDPSLT 268
Query: 55 YKTNIKLLAVPVTFRSLKNKGIDIFMGYWYP--------------------SLEKFIAPY 94
+ F +L+N IDI+ + + ++
Sbjct: 269 VEIKPNFGKTSFLFSALENDQIDIYPEFTGTVLESLVKVPENTQIDGSPESTYQEATKLL 328
Query: 95 LEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQR 154
++ +++L+ Y LA+ + + + +E +
Sbjct: 329 SDQFNMRLLEPMTYENTYALAMRREQAEELGITKISELVAHESELRAGFTLE-FIDREDG 387
Query: 155 ILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPG 214
+ + ++ + + + ++ V ++ N+ L
Sbjct: 388 YRGIQKQYGLTF------DSVQSMEPALRYQAIQSKDVDVIDAYSTDSEIKQYNLVVLED 441
Query: 215 GEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFV 272
++ +++ ++ + P + + LK + K + +M + + V
Sbjct: 442 DRQLF--PPYQGAALMKDEFAAEHPQVVKALKKLSGKITEDQMIDMNYQVNVEGKQPADV 499
Query: 273 GRTMLRT 279
R L+
Sbjct: 500 AREFLKK 506
>gi|331270536|ref|YP_004397028.1| putative glycine betaine/carnitine/choline ABC transporter
[Clostridium botulinum BKT015925]
gi|329127086|gb|AEB77031.1| probable glycine betaine/carnitine/choline ABC transporter
[Clostridium botulinum BKT015925]
Length = 528
Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats.
Identities = 47/301 (15%), Positives = 99/301 (32%), Gaps = 36/301 (11%)
Query: 3 KILAVCLFLTTFSISYARDA----DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
K +A+ L I + A D + +T+ M + ++E+ +
Sbjct: 231 KRIAMILVGVICGILVSACAYKIYDDNRSIVVGSKNYTEELILGNMYATLIEKNTNLRVK 290
Query: 59 ---IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFI----------------APYLEEGS 99
I L VTF++L++ IDI+ Y +L + + +E +
Sbjct: 291 RTGINLGGAGVTFQALRSGDIDIYPEYTGVALVNIMGRKAVNDPDKAFNIVKDYFNKEYN 350
Query: 100 IKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI 159
I + Y+LA+N S ++++ K I G D
Sbjct: 351 ITWMDPMGYNNTYVLAINKEIAKQY--SLKNLSDLSKVSDDLILGC------TMEFSDRQ 402
Query: 160 NNNKFSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ + + + + + +N V ++ + ++ L +
Sbjct: 403 DGYLGMKDFYGMKFKNLKSLDGSLRYSALESNEVDVIDAFATDGLLKVYDLVRLKD--DK 460
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F ++R+D L K P + ++L + K S E+ + +D + V
Sbjct: 461 RFFPPYYAAPIIRNDALKKHPELKKVLNILAGKVSEEDMTELNYKVDKLGEDPRKVADDF 520
Query: 277 L 277
L
Sbjct: 521 L 521
>gi|148379598|ref|YP_001254139.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Clostridium botulinum
A str. ATCC 3502]
gi|148289082|emb|CAL83172.1| glycine betaine/carnitine/choline transport system permease protein
opucb [Clostridium botulinum A str. ATCC 3502]
Length = 528
Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats.
Identities = 42/298 (14%), Positives = 93/298 (31%), Gaps = 34/298 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
IL V + L D V +T+ + +++ KL
Sbjct: 238 ILGVLIVLALIVPKLIGLGD--KKVVIGSKNFTEQIILGNILEELIDNKTDIDVETKLNL 295
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFI-----------------APYLEEGSIKLVA 104
V+F +LK GID+++ Y + + + E+ I+++
Sbjct: 296 GGTQVSFNALKTGGIDMYVEYTGTAYGNMLNIKKPNRDRQAVYNTVKKEFKEKFGIEVLN 355
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYG-IEPGNEGNQRILDMINNNK 163
Y++A + + + I G I+ +
Sbjct: 356 PIGFNNTYVMATTKEIAQKY--NLKTTSDLANVSSKMILGPTIEFANREDGIIGLNKAYN 413
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+ K + I+ + NN + ++ + N+ L + F +
Sbjct: 414 MNFKAVKPIDG------GLRYKALVNNETQIIDAFTTDGLIEQFNLVLLED--DKHFFPD 465
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+V+ + L K P + +L + K + ++ + NK+D + V + L+
Sbjct: 466 YYAVPIVKEETLKKFPELKEVLGALDGKITDEKMRKLNYEVDVNKRDPKEVAKEFLQK 523
>gi|290476213|ref|YP_003469113.1| glycine/betaine/proline ABC transporter periplasmic binding protein
[Xenorhabdus bovienii SS-2004]
gi|289175546|emb|CBJ82349.1| glycine/betaine/proline transport protein (ABC superfamily,
peri_bind) [Xenorhabdus bovienii SS-2004]
Length = 344
Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats.
Identities = 49/330 (14%), Positives = 97/330 (29%), Gaps = 38/330 (11%)
Query: 1 MYK--ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M K IL + L +A + V+ + ++ T + +LE LGY
Sbjct: 11 MNKNTILGLALSSLVSIPLFASELPGQGISVQPLQSTISEETFQTLIVCKVLE-KLGYDI 69
Query: 58 N-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
IK + V + S+ W P + + ++ A +
Sbjct: 70 KPIKEVDYNVAYASIAAGDATFMAVNWVPLHNSQYKAAGGDKKLYRKGTYVENAVQGYLI 129
Query: 117 NDVGFALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
+ + + + A + G PG + I +
Sbjct: 130 DKKTAEKYRITNIAQLQDPQLAKLFDSNGDGKADLTGCNPGWGCEKAINSQLKAYGLE-N 188
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINS----DLNIHYLPGGEEI----- 218
+ + A + R + P + +W P+ ++ D ++ +L
Sbjct: 189 TVEHNQGNYAAMMADTIARYRESKPIFYYTWTPYWVSDVLKLDTDVIWLQVPFSALNDDE 248
Query: 219 -----------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQ 267
GF ++++ V + +K P + L IK VA N + +K
Sbjct: 249 VVDTQLPNGRNYGFPPSTMHIVANKIWAEKNPAAAMLFAVIKLPVADINAQNLRMHRDKV 308
Query: 268 DRQFV---GRTMLRTHPDLLKNWLIGVTTF 294
+ LR H ++ WL
Sbjct: 309 SEIDIEHHAEGWLRAHQTIVDEWLEAARKA 338
>gi|167749031|ref|ZP_02421158.1| hypothetical protein ANACAC_03812 [Anaerostipes caccae DSM 14662]
gi|317472570|ref|ZP_07931889.1| inner membrane transporter [Anaerostipes sp. 3_2_56FAA]
gi|167651653|gb|EDR95782.1| hypothetical protein ANACAC_03812 [Anaerostipes caccae DSM 14662]
gi|316899979|gb|EFV21974.1| inner membrane transporter [Anaerostipes sp. 3_2_56FAA]
Length = 525
Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats.
Identities = 30/302 (9%), Positives = 83/302 (27%), Gaps = 34/302 (11%)
Query: 2 YKILAVCLFLTTFSISYA---RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
+L + L + + + +T+ + + ++E+ K +
Sbjct: 228 KGVLVLVGILVAAIMGNSIIGSFKGDDKRIAIGSKDFTEQLVLCNLYADVIEDKTDIKVD 287
Query: 59 IKL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP----------------YLEEGSI 100
+ V + + ID+++ Y + + + E+ +
Sbjct: 288 RRENLGGSEVCYEAQDKGEIDMYVEYTGTAYMNILKEESTNDMDKVYNTLKKYFKEKNNF 347
Query: 101 KLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN 160
+++ + Y LAV + K + G + L+ +
Sbjct: 348 EVLDQTKFNNTYTLAVTKETAKKYNLN--------KISDLRGVGSQLSIGSTLEFLNRAD 399
Query: 161 NNKFSLKGFRLIEASELASFSQ-IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
+ + +E N V ++ + + L ++
Sbjct: 400 GIPGLCETYGFKFKNETGIDGSPRYTALENKKVDVVDAFATDGLLKKFKLKVLEDDKKYF 459
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
V+R D L K P + +++ + + EM + ++ + L
Sbjct: 460 --PPYYAVPVIREDTLKKYPELEKVINELSAVLTNDAMMEMNYEVDELGKEPREAAHDYL 517
Query: 278 RT 279
Sbjct: 518 VE 519
>gi|268590428|ref|ZP_06124649.1| glycine betaine-binding periplasmic protein [Providencia rettgeri
DSM 1131]
gi|291314342|gb|EFE54795.1| glycine betaine-binding periplasmic protein [Providencia rettgeri
DSM 1131]
Length = 331
Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats.
Identities = 43/326 (13%), Positives = 95/326 (29%), Gaps = 39/326 (11%)
Query: 1 MY-KILAVCLFLTTFSISYARD---ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
M KI+ F++ +A + + ++ T + + LEE LGY
Sbjct: 1 MKHKIILASALTAMFTVPFAGANDLPGKGVKINPVQSTISEETFQTLIVAKALEE-LGYD 59
Query: 57 TN-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
IK + V + S+ N W P + + A
Sbjct: 60 VQPIKEVDYNVAYASIANGDATYLATSWVPLHNAQYDAAGGDNVFYRQGNYVVNAAQGYL 119
Query: 116 VNDVGFALGIKSYQD---------IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSL 166
++ + + + A + G PG I + +
Sbjct: 120 IDKKTAEKYKITNVEQLKDPKIAKLFDSNGNGKADLTGCNPGWGCEAAINNHLKAYDLEK 179
Query: 167 KGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGE------ 216
+ + A + + P ++ +W P+ I+ ++ +L
Sbjct: 180 T-VDHNQGNYAAMMADTITRYKEGKPILYYTWTPYWISDVLKPGRDVVWLEVPFSSMPNG 238
Query: 217 ----------EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNK 266
+ GF +++ V + P ++L + +K +A N + N +
Sbjct: 239 EKTDTTLPNGKNYGFPPNTMHIVANKKWAADNPAAAKLFEVMKLPIADINAQNLRMHNGE 298
Query: 267 QDRQFVGRT---MLRTHPDLLKNWLI 289
+ + R ++ H W+
Sbjct: 299 ASQSDIQRHTNAWIKAHQSTFDGWVK 324
>gi|329928960|ref|ZP_08282770.1| glycine betaine-binding protein [Paenibacillus sp. HGF5]
gi|328937212|gb|EGG33639.1| glycine betaine-binding protein [Paenibacillus sp. HGF5]
Length = 306
Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats.
Identities = 37/162 (22%), Positives = 72/162 (44%), Gaps = 4/162 (2%)
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
++ +I GI+PG + I + ++LIE S A + + + +N P +
Sbjct: 47 DQVKHEIIGIDPGAGIMKATAAAIEEYGLTD--WKLIEGSGAAMTATLDKAIKNEDPIII 104
Query: 196 LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
W PH + + ++ YL +++ G E ++TV R + P + L N K++
Sbjct: 105 TGWTPHWMFAKYDLKYLEDPKKVYGEAE-EIHTVARLGLQEDHPEAYKFLSNFKWTSDDM 163
Query: 256 NEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQ 297
++M I QD + + ++ + + WL GV DG+
Sbjct: 164 GQIMTAI-QEGQDPEAAAKEWADSNAEKVDAWLEGVQPVDGK 204
Score = 72.6 bits (176), Expect = 8e-11, Method: Composition-based stats.
Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 1/107 (0%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFM 80
+F+ W A+T + VI+EE LGYK + + + N +D +
Sbjct: 199 QPVDGKSFKFSYVAWDSEIASTNLLKVIMEEKLGYKVEALQVEAGPMWTGVANGDVDATV 258
Query: 81 GYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKS 127
W P + ++ + N++G K L V A I+
Sbjct: 259 AAWLPLTHADYWDK-FKDQVEDLGANMEGVKTGLVVPSYVEANSIED 304
>gi|261409049|ref|YP_003245290.1| Substrate-binding region of ABC-type glycine betaine transport
system [Paenibacillus sp. Y412MC10]
gi|261285512|gb|ACX67483.1| Substrate-binding region of ABC-type glycine betaine transport
system [Paenibacillus sp. Y412MC10]
Length = 306
Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats.
Identities = 37/162 (22%), Positives = 72/162 (44%), Gaps = 4/162 (2%)
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
++ +I GI+PG + I + ++LIE S A + + + +N P +
Sbjct: 47 DQVKHEIIGIDPGAGIMKATAAAIEEYGLTD--WKLIEGSGAAMTATLDKAIKNEDPIII 104
Query: 196 LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
W PH + + ++ YL +++ G E ++TV R + P + L N K++
Sbjct: 105 TGWTPHWMFAKYDLKYLEDPKKVYGEAE-EIHTVARLGLQEDHPEAYKFLSNFKWTSDDM 163
Query: 256 NEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQ 297
++M I QD + + ++ + + WL GV DG+
Sbjct: 164 GQIMTAI-QEGQDPEAAAKEWADSNAEKVDAWLEGVQPVDGK 204
Score = 72.6 bits (176), Expect = 8e-11, Method: Composition-based stats.
Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 1/107 (0%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFM 80
+F+ W A+T + VI+EE LGYK + + + N +D +
Sbjct: 199 QPVDGKSFKFSYVAWDSEIASTNLLKVIMEEKLGYKVEALQVEAGPMWTGVANGDVDATV 258
Query: 81 GYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKS 127
W P + ++ + N++G K L V A I+
Sbjct: 259 AAWLPLTHADYWDK-FKDQVEDLGANMEGVKTGLVVPSYVEANSIED 304
>gi|299822927|ref|ZP_07054813.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Listeria grayi DSM 20601]
gi|299816456|gb|EFI83694.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Listeria grayi DSM 20601]
Length = 504
Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats.
Identities = 38/299 (12%), Positives = 86/299 (28%), Gaps = 34/299 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
L V + L I+ + + A + M ++E+ K N+K
Sbjct: 212 TLIVAVLLAASVIAIPYFSGQKKEITIAGKLGAEPEILINMYKYVIEDETDLKVNVKPNM 271
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPY-----------------LEEGSIKLVA 104
F +LK+ IDI+ + LE F+ ++ + +
Sbjct: 272 GKTSFLFNALKSGNIDIYPEFTGTVLETFLQEKAKSRDEKAVYEQARDGIAKKYDMTYLP 331
Query: 105 ENLQGAKYMLAV-NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK 163
Y LA+ A I++ D+ +L D + K
Sbjct: 332 PMKYNNTYALAISPKFAKANKIENISDLEDVTDKLKV---------GFTLEFKDRGDGYK 382
Query: 164 FSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
K + + + ++ + + ++ + L + F
Sbjct: 383 GIEKLYGIHFPNIKTMEPKLRYSAYKQGDINLLDAYSTDSEIRQYKLKVLQD--DKHLFP 440
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++ + + K P + + L + + +M + N + + V + L
Sbjct: 441 PYQGAPLMLTKTIKKYPELKKPLSKLSNIITDDEMRQMNYEVNVNGKSAKEVAKNFLEK 499
>gi|294633687|ref|ZP_06712245.1| glycine betaine-binding lipoprotein [Streptomyces sp. e14]
gi|292830329|gb|EFF88680.1| glycine betaine-binding lipoprotein [Streptomyces sp. e14]
Length = 318
Score = 139 bits (351), Expect = 4e-31, Method: Composition-based stats.
Identities = 42/290 (14%), Positives = 92/290 (31%), Gaps = 17/290 (5%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKG 75
S A V + W + A+ ILE LGY+ + + + +L
Sbjct: 30 ASPFAGAQGSKTVTLSVQSWVGAQSNVAVAQYILEHQLGYRVDTVQVDEVPAWDALSQGR 89
Query: 76 IDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA--LGIKSYQDIAK 133
+D + W ++ ++ +I E V I ++++ K
Sbjct: 90 VDALLEDWG-HPDQEKRYVEDKKTIADAGELGVTGHIGWFVPTYLAERHPDITDWRNLDK 148
Query: 134 YKKELGAKIYGIEPG---NEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
Y G + + D L + SE A +Q+++ +
Sbjct: 149 YASLFRTAESGGKGQLMDGSPSYVTNDKALVANLKLDYQVVFAGSEAAQITQMKQFAKEK 208
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEE-----------ISGFGEASVYTVVRSDYLDKCP 239
P + + P ++ + + + + + + + +
Sbjct: 209 KPFLTYWYTPQWLSEKVPMTEVKLPPYKEGCDADPAKVACAYPHTPLKKFLNARFARSGG 268
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+ LK +++ +NE+ +I + K Q R + HP++ K WL
Sbjct: 269 KAAAFLKKFRWTTEDQNEVSLMIADQKLSPQEAARKWVDGHPEVWKRWLS 318
>gi|77457032|ref|YP_346537.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas fluorescens Pf0-1]
gi|77381035|gb|ABA72548.1| putative amino acid ABC transport system, substrate-binding protein
[Pseudomonas fluorescens Pf0-1]
Length = 297
Score = 139 bits (351), Expect = 4e-31, Method: Composition-based stats.
Identities = 40/304 (13%), Positives = 86/304 (28%), Gaps = 32/304 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M ++ + + A +R +T+ +T+ L GY I
Sbjct: 1 MKRL--SLILGCVLLFAGIAQAADKPVIRLGARVFTEQTLLAEITAQYLRSK-GYDAQIT 57
Query: 61 LL-AVPVTFRSLKNKGIDIFMGYWYPSLEKF---------------IAPYLEEGSIKLVA 104
+ + + +D+ Y SL + + + + +
Sbjct: 58 GGLGSNLARSAHETGQLDMLWEYTGVSLVAYNHVTEKLDSAQSYARVKELDAKKGLVWLT 117
Query: 105 ENLQGAKYMLAVNDVGFA--LGIKSYQDIAKYKKELGAKIYGIE---PGNEGNQRILDMI 159
+ Y LA+ I + + K + + + + M+
Sbjct: 118 PSKFSNTYALALPKKVAEEYPQIHTISQLNDVLKAEAKTNHLVALDTEFANRSDGLDGMV 177
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
+L + + + RN L + + + L +
Sbjct: 178 KLYDMNLTRQNIRQMDAG----LVYTALRNGQVFAGLVYTTDGRLNAFGLKLLED--DKH 231
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
F + + VVR YLD P ++ LK + F ++ + + + V L
Sbjct: 232 YFPDYTAAPVVRQAYLDAHPQLAEQLKPLAELFDDETMRQLNARVDVDHESPSKVAADFL 291
Query: 278 RTHP 281
R HP
Sbjct: 292 RQHP 295
>gi|319938795|ref|ZP_08013159.1| glycine betaine transport system permease [Streptococcus anginosus
1_2_62CV]
gi|319811845|gb|EFW08111.1| glycine betaine transport system permease [Streptococcus anginosus
1_2_62CV]
Length = 510
Score = 139 bits (351), Expect = 4e-31, Method: Composition-based stats.
Identities = 42/302 (13%), Positives = 85/302 (28%), Gaps = 34/302 (11%)
Query: 2 YKILAVCLFLTTFSI---SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
K L V FLT + ++ + V+ A T+ M ++E+ K
Sbjct: 213 KKWLVVLSFLTFLTAGIIAFFQMNPMGGTVKIATKPQTENYILGEMQKQVIEQYTNLKVK 272
Query: 59 IKL---LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIA---------------PYLEEGSI 100
+ ++ DI+ Y E + Y ++ +
Sbjct: 273 MTKGVGGGTANIHPAMLKGDFDIYAEYTGTIWEVILKQSGSYDESQFKILESQYRKKYRL 332
Query: 101 KLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMI 159
+ V Y LAV + + + K +G E +
Sbjct: 333 EWVNTFGFNNTYGLAVRKDIAEKY--NIKTFSDLAKASPNLTFGAEYDFFGREDGFARLR 390
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
+ ++ + ++ + N+ L ++
Sbjct: 391 STYGMKF------KSQVDMDSGLKYQAVKSGRVDAIDIFTTDGQLHGANLVVLKDDKK-- 442
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ TVVRS L K P + R L + + + E+ + N+K++ V L
Sbjct: 443 IYPSYQAGTVVRSTTLKKYPQLKRALAKLDGILNDSKMAELNHKVENDKEEPAKVAHDYL 502
Query: 278 RT 279
Sbjct: 503 VE 504
>gi|329117016|ref|ZP_08245733.1| ABC transporter, substrate-binding protein, QAT family
[Streptococcus parauberis NCFD 2020]
gi|326907421|gb|EGE54335.1| ABC transporter, substrate-binding protein, QAT family
[Streptococcus parauberis NCFD 2020]
Length = 507
Score = 139 bits (351), Expect = 4e-31, Method: Composition-based stats.
Identities = 35/306 (11%), Positives = 83/306 (27%), Gaps = 40/306 (13%)
Query: 1 MYKILAVCLFLTTFSISY------ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
+ KI+ + S + A + + ++E+
Sbjct: 206 LKKIIYAFTVIVLGLFSSYLPSIVNSIGKKSDTITIAGKLGAEPEILINIYKEMIEDQSD 265
Query: 55 YKTNIKL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL----------------- 95
+K ++++K+ IDI+ + +
Sbjct: 266 LNVELKPNFGKTTFLYQAVKSGDIDIYPEFTGTITSSLLNKKPALSNNPKTVYYDAKDGI 325
Query: 96 -EEGSIKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQ 153
++ + + Y +A+ IK+ D+ KY+ EL
Sbjct: 326 AKQDHLAFLKPFRYQNTYAVAIPQKLAQEKKIKTISDLKKYQSELK---------AGFTL 376
Query: 154 RILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLP 213
D + NK + L + + + V ++ + + L
Sbjct: 377 EFKDRPDGNKGLQDVYGLNLQVSTMEPALRYQAIESGKIQVTDAYSTDAELTKYKLQVLE 436
Query: 214 GGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQF 271
+ F +++ + + K P I +L + K + +M + +D
Sbjct: 437 D--DKHLFPPYQGAPLMKGELVKKHPEIKEILNKLSGKITEEEMQKMNYQVSVQGKDASK 494
Query: 272 VGRTML 277
V L
Sbjct: 495 VAHDYL 500
>gi|297158150|gb|ADI07862.1| glycine betaine-binding lipoprotein [Streptomyces bingchenggensis
BCW-1]
Length = 340
Score = 139 bits (351), Expect = 4e-31, Method: Composition-based stats.
Identities = 43/320 (13%), Positives = 101/320 (31%), Gaps = 36/320 (11%)
Query: 3 KILAVCLFLTTFSISYARDADS-------------CTPVRFADTGWTDIAATTAMTSVIL 49
++L +T + A V + W + A+ +L
Sbjct: 22 RLLTAATGVTALLTATGCGAADMTKQSSPYANVGGAKSVTLSVQSWVGAQSNVAVAEYLL 81
Query: 50 EEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQG 109
+ LGY+ + + + +L +D + W Y+++ +L
Sbjct: 82 DHELGYRVDTVQVDEVPAWDALSQGRVDAILEDWG--HPDQEQRYVKDKKTIAPGGDLGV 139
Query: 110 AKY-MLAVNDVGFA--LGIKSYQDIAKYKKELGAKIYGIEPG---NEGNQRILDMINNNK 163
+ V + ++++ KY K G + + D
Sbjct: 140 TGHIGWFVPKYFADAHPDVTDWRNLDKYAKTFRTAESGGKGQLLDGSPSYVTNDKALVKN 199
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI----- 218
L + SE A +QI++ + P + + P + + + + + +
Sbjct: 200 LDLDYQVVFSGSEAAQITQIKQFAKEKKPFLTYWYAPQWLFNQVPMVEVKLPKYTDACAA 259
Query: 219 ----------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQD 268
+ + + +D+ K + LK ++ +NE+ +LI ++
Sbjct: 260 KGAEDPESFDCAYPTTPLQKYLNADFARKGGKAAAFLKKFHWTEEDQNEVAELIASDGLS 319
Query: 269 RQFVGRTMLRTHPDLLKNWL 288
+ ++ HPD+ K WL
Sbjct: 320 AEDAAEKWVKEHPDVWKKWL 339
>gi|269794247|ref|YP_003313702.1| proline/glycine betaine ABC transporter periplasmic protein
[Sanguibacter keddieii DSM 10542]
gi|269096432|gb|ACZ20868.1| ABC-type proline/glycine betaine transport system, periplasmic
component [Sanguibacter keddieii DSM 10542]
Length = 307
Score = 139 bits (351), Expect = 4e-31, Method: Composition-based stats.
Identities = 49/296 (16%), Positives = 95/296 (32%), Gaps = 22/296 (7%)
Query: 5 LAVCLFLTTFSISYARDADSC------------TPVRFADT-GWTDIAATTAMTSVILEE 51
L ++ DS + GW + A + + V+LEE
Sbjct: 11 LVAGSLAVALGLAACSSDDSSAEDAPRLDNGDLETISIGIHSGWDEGIAVSHLFKVMLEE 70
Query: 52 ILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAK 111
GY V + L D+ W P+ + ++++ AK
Sbjct: 71 E-GYTVETTEADAGVVYTGLTGGDFDVNFDMWLPNTHADYLTQYGD-EMEMLGVWYDDAK 128
Query: 112 YMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
+AVN+ I S ++A G ++ GIE G + D + L+
Sbjct: 129 LTIAVNEDSP---ITSLDELADNADVFGNRLVGIESGAGLTRITQD-DAIPGYGLEDMNF 184
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVR 231
+ +S A ++++ W PH I L + + G E + +V R
Sbjct: 185 VVSSTPAMLAELKGATDAGNDVAVTLWRPHWAYDAFPIRDLEDPQGLMGEAE-EINSVGR 243
Query: 232 SDYLDKCPNISRLLKNIKFSVALENEMMKLI--LNNKQDRQFVGRTMLRTHPDLLK 285
+D+ P + + + + + ++ N D + L +P +
Sbjct: 244 ADFATDYPTAASWIGAFELTDEQLFSLENIMFNENGGSDNDESVKQWLEENPTFVD 299
>gi|257866004|ref|ZP_05645657.1| ABC-type proline/glycine betaine transporter [Enterococcus
casseliflavus EC30]
gi|257872337|ref|ZP_05651990.1| ABC-type proline/glycine betaine transporter [Enterococcus
casseliflavus EC10]
gi|257799938|gb|EEV28990.1| ABC-type proline/glycine betaine transporter [Enterococcus
casseliflavus EC30]
gi|257806501|gb|EEV35323.1| ABC-type proline/glycine betaine transporter [Enterococcus
casseliflavus EC10]
Length = 513
Score = 139 bits (351), Expect = 4e-31, Method: Composition-based stats.
Identities = 31/301 (10%), Positives = 87/301 (28%), Gaps = 36/301 (11%)
Query: 4 ILAVCLFLTTFSISYARDAD-SCTPVRFADTGWTDIAATTAMTSVILEEI-LGYKTNIKL 61
I + L +S+++ + + A ++ M ++E+ + ++
Sbjct: 211 ITLAAIILLIGGVSFSQSGFFAPKTITIAGKLGSEPDILINMYKELIEQEDPDAQVELEP 270
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYP---------------------SLEKFIAPYLEEG 98
F +L N +DI+ + + + + ++
Sbjct: 271 NFGKTSFLFSALDNGQVDIYPEFTGTVLESLVEVPEELASQNLDSDETYTEAVNLLKDQF 330
Query: 99 SIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ L+ Y LAV + K + + +E + +
Sbjct: 331 EMTLLQPMAYQNTYALAVKKEFAEENGLTTISDLKKIENQIKAGFTLE-FIDRTDGYAGI 389
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ + + + N + ++ + L +E+
Sbjct: 390 QELYGLDF------PSVQSMEPALRYQAINNGDINLLDAYSTDSELRQYGLVILEDDQEL 443
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
+++ + ++ P + R L+ + K + +EM + ++ V RT
Sbjct: 444 F--PPYQGAPLMKEAFAEEHPEVVRALEKLAGKITEEQMSEMNYQVNVEGKNPAEVARTF 501
Query: 277 L 277
L
Sbjct: 502 L 502
>gi|331265817|ref|YP_004325447.1| ABC transporter membrane-spanning permease (glycine
betaine/carnitine/choline transport system permease,
putative [Streptococcus oralis Uo5]
gi|326682489|emb|CBZ00106.1| ABC transporter membrane-spanning permease (glycine
betaine/carnitine/choline transport system permease,
putative [Streptococcus oralis Uo5]
Length = 506
Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats.
Identities = 38/303 (12%), Positives = 92/303 (30%), Gaps = 35/303 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDAD-SCTPVRFADTGWTDIAATTAMTSVILEEI--LGYKT 57
++ A+ + L S S A A + A + M +++EE +
Sbjct: 209 IFSGFALVIILLGLSYSPALLAQKEKENLVIAGKLGPEPEILANMYKLLIEENTSMTATV 268
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------EGS 99
+ +LK IDI+ + E + P + +
Sbjct: 269 KPNFGKTSFLYEALKKGDIDIYPEFTGTVTESLLQPAPKVGHEPEQVYQVARDGIAKQDH 328
Query: 100 IKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ + Y +AV G+K+ D+ K + +L D
Sbjct: 329 LTYLKPMSYQNTYAVAVPKKIAQEYGLKTISDLKKVEGQLK---------AGFTLEFNDR 379
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ NK + L + + ++ + ++ + ++ L +
Sbjct: 380 EDGNKGLQSLYGLNLNVATMEPALRYQAIQSGDIQITDAYSTDAELARYDLQVLED--DK 437
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F +++ L K P + +L + K + + +++ + + + V +
Sbjct: 438 QLFPPYQGAPLMKEALLKKHPELETVLNKLAGKITESQMSQLNYQVGVEGKSAEQVAKEF 497
Query: 277 LRT 279
L+
Sbjct: 498 LQE 500
>gi|242372956|ref|ZP_04818530.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Staphylococcus epidermidis M23864:W1]
gi|242349440|gb|EES41041.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Staphylococcus epidermidis M23864:W1]
Length = 504
Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats.
Identities = 40/303 (13%), Positives = 92/303 (30%), Gaps = 35/303 (11%)
Query: 2 YKILA---VCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
K+L + + +I A + A ++ + T M +++EE +
Sbjct: 207 KKLLITLGAIVLVILLAIVIPLFAQKGDKITLAGKLGSEPSVITNMYKILIEEETDDTVD 266
Query: 59 IK--LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP-----------------YLEEGS 99
+K + F +LK+ ID ++ + L + ++
Sbjct: 267 VKDGMGKTSFLFNALKSDDIDGYLEFTGTVLGELTKEDLKSKKEPAVYNQAKTSLEKKYK 326
Query: 100 IKLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ ++ Y LAV IK+ D+ K + +L N+ +
Sbjct: 327 MTMLKPMKYNNTYALAVKRDFAKKNNIKTIGDLQKVEDKLKPGFTL--EFNDRPDGFKAV 384
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
++ + +E + ++ ++ L +
Sbjct: 385 KKAYDLNISNVKTMEPKLR------YTAVEKGDINLIDAYSTDAELKQYDMVVLKD--DK 436
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F + + +L + P I + L + K + EM + K+D V +
Sbjct: 437 HVFPPYQGAPMFKEKFLKEHPEIKKPLNQLAGKITDEQMQEMNYKVTVKKEDPYKVAKAY 496
Query: 277 LRT 279
L+
Sbjct: 497 LKK 499
>gi|223933132|ref|ZP_03625124.1| Substrate-binding region of ABC-type glycine betaine transport
system [Streptococcus suis 89/1591]
gi|330833225|ref|YP_004402050.1| glycine betaine ABC transporter substrate-binding protein
[Streptococcus suis ST3]
gi|223898193|gb|EEF64562.1| Substrate-binding region of ABC-type glycine betaine transport
system [Streptococcus suis 89/1591]
gi|329307448|gb|AEB81864.1| Substrate-binding region of ABC-type glycine betaine transport
system [Streptococcus suis ST3]
Length = 503
Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats.
Identities = 37/295 (12%), Positives = 86/295 (29%), Gaps = 20/295 (6%)
Query: 3 KILAVCLFLTTFSISYARDAD---SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
K + + L +T F++ + S + A + M +++E+ K I
Sbjct: 206 KTILLALLVTLFTVGASYVPMLNFSTKQLVIAGKLGAEPEILINMYKLLIEDRTDIKVEI 265
Query: 60 KL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEE--GSIKLVAENLQGA---KY 112
K + +LK+ IDI+ Y + + + + V + A +
Sbjct: 266 KPNFGKTSFLYEALKSGSIDIYPEYTGTITSTLLKNSPMDLSTNPEEVYTYAKEAILEQD 325
Query: 113 MLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPG------NEGNQRILDMINNNKFSL 166
L + Y ++ G + + D + N
Sbjct: 326 GLVYLAPMAFQNTYALAVTEDYAQKNGIEKISDLAKVQQTAVAGFSLEFNDREDGNIGLK 385
Query: 167 KGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV 226
+ L + + ++ + ++ + L + F
Sbjct: 386 NLYNLQLNVKTMEPALRYEAIKSGNVQIIEAYSTDSKVVTYKLKILED--DKRLFPPYQA 443
Query: 227 YTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++ + L+K P + ++L + K S M + + + V R L
Sbjct: 444 APLLSKETLEKYPELEQVLGVLAGKISTEEMTRMNYAVDVEGKSAEQVAREYLEQ 498
>gi|257875632|ref|ZP_05655285.1| ABC-type proline/glycine betaine transporter [Enterococcus
casseliflavus EC20]
gi|257809798|gb|EEV38618.1| ABC-type proline/glycine betaine transporter [Enterococcus
casseliflavus EC20]
Length = 513
Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats.
Identities = 31/301 (10%), Positives = 86/301 (28%), Gaps = 36/301 (11%)
Query: 4 ILAVCLFLTTFSISYARDAD-SCTPVRFADTGWTDIAATTAMTSVILEEI-LGYKTNIKL 61
I + L +S+++ + + A ++ M ++E+ + ++
Sbjct: 211 ITLAAIILLIGGVSFSQSGFFAPKTITIAGKLGSEPDILINMYKELIEQEDPDAQVELEP 270
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYP---------------------SLEKFIAPYLEEG 98
F +L N +DI+ + + + + ++
Sbjct: 271 NFGKTSFLFSALDNGQVDIYPEFTGTVLESLVEVPEELASQNLDSDETYTEAVNLLKDQF 330
Query: 99 SIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ L+ Y LAV + K + + +E + +
Sbjct: 331 EMTLLQPMAYQNTYALAVKKEFAEENGLTTISDLKKIENQIKAGFTLE-FIDRTDGYAGI 389
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ + + + N + ++ + L +E+
Sbjct: 390 QELYGLDF------PSVQSMEPALRYQAINNGDINLLDAYSTDSELRQYGLVILEDDQEL 443
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
+++ + + P + R L+ + K + +EM + ++ V RT
Sbjct: 444 F--PPYQGAPLMKEAFAKEHPEVVRALEKLAGKITEEQMSEMNYQVNVEGKNPAEVARTF 501
Query: 277 L 277
L
Sbjct: 502 L 502
>gi|56709015|ref|YP_165060.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Ruegeria pomeroyi DSS-3]
gi|56680700|gb|AAV97365.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Ruegeria pomeroyi DSS-3]
Length = 313
Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats.
Identities = 39/313 (12%), Positives = 96/313 (30%), Gaps = 35/313 (11%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
+ + L+ + ++A D V W + AT + ++LE+ LG + ++ +
Sbjct: 8 MTTTVMLSLGTSAFAAD------VVIGVPNWPSVRATAHVLKIVLEDNLGLEVELQNGSN 61
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
P+ F ++ + + W P+ +++E + N A + V
Sbjct: 62 PIIFEAMDAGAMQVHPEVWLPNQSNLHNTFVKEKGTVAMNPNGIAADQAMCVTRGTAERT 121
Query: 125 I---------KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
+ +I+ G + + L E
Sbjct: 122 GIKALSELSDPDMAAKFDSDGDGLGEIWIGAAGWASTNVEKIRAKSYGYDQT-MTLKEMD 180
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE------------EISGFGE 223
E + +++ + F + PH + ++ L + + E
Sbjct: 181 ETLALAEVDAATDQDTNIAFFCYTPHHMFQLYDLVLLEEPPHDPAQWKVAQPTDDPNWLE 240
Query: 224 ASVYTVVRSDY-------LDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
S V + P + +L + + + M+ ++ + D + R
Sbjct: 241 NSSAAVAWDKAYLHIHYQAEMDPAAAAVLAKVDLTSDQVSAMVYALIVDGMDAEAFARNW 300
Query: 277 LRTHPDLLKNWLI 289
+ + D + +WL
Sbjct: 301 VEENADQVDSWLN 313
>gi|306830018|ref|ZP_07463205.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Streptococcus mitis ATCC 6249]
gi|304428029|gb|EFM31122.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Streptococcus mitis ATCC 6249]
Length = 506
Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats.
Identities = 38/303 (12%), Positives = 91/303 (30%), Gaps = 35/303 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDAD-SCTPVRFADTGWTDIAATTAMTSVILEEI--LGYKT 57
++ A+ L S S A A + A + M +++EE +
Sbjct: 209 IFSGFALVTILLGLSYSPALLAQKEKENLVIAGKLGPEPEILANMYKLLIEENTSMTVTV 268
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------EGS 99
+ +LK IDI+ + E + P + +
Sbjct: 269 KPNFGKTSFLYEALKKGDIDIYPEFTGTVTESLLQPSPKVGHEPEQVYQVARDSIAKQDH 328
Query: 100 IKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ + Y +AV G+K+ D+ K + +L D
Sbjct: 329 LAYLKPMSYQNTYAVAVPKKIAQEYGLKTISDLKKVEGQLK---------AGFTLEFNDR 379
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ NK + L + + ++ + ++ + ++ L +
Sbjct: 380 EDGNKGLQSMYGLNLNVATMEPALRYQAIQSGDIQITDAYSTDAELARYDLQVLED--DK 437
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F +++ L K P + +L + K + + +++ + + + V +
Sbjct: 438 QLFPPYQGAPLMKEALLKKHPELEPVLNKLAGKITESQMSQLNYQVGVEGKSAEQVAKEF 497
Query: 277 LRT 279
L+
Sbjct: 498 LQE 500
>gi|71083499|ref|YP_266218.1| hypothetical protein SAR11_0797 [Candidatus Pelagibacter ubique
HTCC1062]
gi|91762083|ref|ZP_01264048.1| hypothetical protein PU1002_02421 [Candidatus Pelagibacter ubique
HTCC1002]
gi|71062612|gb|AAZ21615.1| hypothetical protein SAR11_0797 [Candidatus Pelagibacter ubique
HTCC1062]
gi|91717885|gb|EAS84535.1| hypothetical protein PU1002_02421 [Candidatus Pelagibacter ubique
HTCC1002]
Length = 320
Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats.
Identities = 51/319 (15%), Positives = 108/319 (33%), Gaps = 33/319 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
KI+ L S+ +A + V+ D GWT A + + ++ + +G + +
Sbjct: 1 MKIIKTTLVAGLISL-FATFSTFAEKVKIGDPGWTGATAIANLLAAVVNDKMGGEAELVP 59
Query: 62 LAVPVTFRSL--KNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ ++ I++ W P+ + + + +G++KL ++ +G +
Sbjct: 60 GNNTAIYAAIDRSKGEIEVHPDIWLPNQQAYTNDLVPKGTLKLSSKPYEGNQGYCVSQQF 119
Query: 120 GFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDM------INNNKFSLKGFRL 171
+ I + +D+A+ + K + + G G + + G
Sbjct: 120 AKKMNITAIEDLARPEVVKAMDSDGNGKGEFWIGADGWASANVNQVKLRDYGLYDAGIEA 179
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE-----EISGFGEASV 226
I A+E +++ + F ++PH I ++ L + +
Sbjct: 180 IRAAEAVKNARVLDSIKKGEGYAFYCYKPHAIWGMADVVMLTEPKFDEAKYKMVQPKEDA 239
Query: 227 YT-----VVRSD------------YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDR 269
V D K P I KN + S + M I K+D
Sbjct: 240 DWYKKSYVASKDALKQIQIGWGTSLEAKSPAIVDFFKNFQLSADDVSLMAFQISVEKKDP 299
Query: 270 QFVGRTMLRTHPDLLKNWL 288
V RT ++ + + WL
Sbjct: 300 ADVARTWMKNNKSKVDGWL 318
>gi|332707044|ref|ZP_08427103.1| ABC-type proline/glycine betaine transport system, periplasmic
component [Lyngbya majuscula 3L]
gi|332354177|gb|EGJ33658.1| ABC-type proline/glycine betaine transport system, periplasmic
component [Lyngbya majuscula 3L]
Length = 352
Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats.
Identities = 45/334 (13%), Positives = 94/334 (28%), Gaps = 40/334 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTN 58
+ ++ +S S VR A + W + T + ++ LE LGY+
Sbjct: 18 IKQLTLGITLTALIGLSACESTSSGKTTKVRSAHSNWIEEQFQTEIVNIGLE-KLGYEIE 76
Query: 59 -IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
K + P+ + S+ N +D + S +F ++ V ++
Sbjct: 77 KPKEIDYPIIYVSVANGDLDYSTINYEKSHIEFFENAGGSKKLERVGVLTPDGIQGYQID 136
Query: 118 DVGFALGIKSYQDIAKYKK---------ELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
+ K K A + G PG I +
Sbjct: 137 KKTADKYNITNLQQFKDPKIAKLFDTDGNGKANLIGCNPGWFCEVVIDHHLKAYGLEDT- 195
Query: 169 FRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINS----DLNIHYLPGGE-------- 216
I + + + + ++ +++PH I++ D +I +L
Sbjct: 196 VEHIRGQYIVLLADVMTRYKQGESIMYYTYQPHWISTILKPDQDIIWLEVPFTSLPESQK 255
Query: 217 -----------EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNN 265
+ GF V +L P R + ++ N I
Sbjct: 256 GLTEKDTSVDGKNLGFTVDRQRIVANKKFLAANPVAKRWFELVQIPAEDINLESLKIKEG 315
Query: 266 KQDRQFV---GRTMLRTHPDLLKNWLIGVTTFDG 296
+ + + + +L +W+ G
Sbjct: 316 ESSPEDIRRHAEEWVENRQELFDSWVEEAKKAGG 349
>gi|319947241|ref|ZP_08021474.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Streptococcus australis
ATCC 700641]
gi|319746483|gb|EFV98743.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Streptococcus australis
ATCC 700641]
Length = 505
Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats.
Identities = 34/303 (11%), Positives = 85/303 (28%), Gaps = 39/303 (12%)
Query: 3 KILAVCLFLTTFSISYARDAD-----SCTPVRFADTGWTDIAATTAMTSVILEEILG--Y 55
+ + + + + + A + M +++EE
Sbjct: 207 RTIFAAFAVMILGLGASYTPSLLPKPEKENLVIAGKLGPEPEILANMYKILIEEKTDMTV 266
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------E 97
+ +LK I I+ + E + P + +
Sbjct: 267 TVKPNFGKTTFLYEALKKGDIAIYPEFTGTVTESLLKPAPQVDHDPEAVYQAARDGIKKQ 326
Query: 98 GSIKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
++ L+ Y +AV G+K+ D+ K + +L A N+
Sbjct: 327 DNLALLKPMAYQNTYAVAVPKKIAQEYGLKTISDLRKVEGQLKAGFTL--EFNDREDGNK 384
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ L+ + + + ++ V ++ + ++ L
Sbjct: 385 GLQKVYGLHLQVSTMEP-------ALRYQAIQSGDIQVTDAYSTDAELARYDLVVLQD-- 435
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F +++ L K P + +L + K + ++M + + V R
Sbjct: 436 DKQLFPPYQGAPLMKEALLKKHPELEGILNQLAGKITAEQMSQMNYQVGVEGKSANQVAR 495
Query: 275 TML 277
L
Sbjct: 496 DFL 498
>gi|159038769|ref|YP_001538022.1| substrate-binding region of ABC-type glycine betaine transport
system [Salinispora arenicola CNS-205]
gi|157917604|gb|ABV99031.1| Substrate-binding region of ABC-type glycine betaine transport
system [Salinispora arenicola CNS-205]
Length = 323
Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats.
Identities = 45/293 (15%), Positives = 90/293 (30%), Gaps = 21/293 (7%)
Query: 14 FSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKN 73
+ A C + A W A A+ S + + L K L+ +++ L
Sbjct: 31 VAAPGPPAAIECGTLTLAVNPWVGYEANVAVISYLAKNQLNCTVVEKDLSEEESWKLLAA 90
Query: 74 KGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKY--MLAVNDVGFA--LGIKSYQ 129
ID + W + + V L G K V GI ++
Sbjct: 91 GEIDAILENWG---HDDLKKQYIDDERVAVEHGLTGNKGIIGWYVPPWLAERYPGITDWR 147
Query: 130 DIAKYKKELGAKIYGIEP---GNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRD 186
+ Y G G + D L SE R
Sbjct: 148 KLNDYTFLFRTPRSGGRGELLGGDPTYVTNDKALIRNLKLNYTVTFTGSEDKLIEAFRTA 207
Query: 187 QRNNIPAVFLSWEPHPINSDLNIHYLPGGEE-----------ISGFGEASVYTVVRSDYL 235
+ + + P S++++ ++ E + + + ++
Sbjct: 208 EEERRAVIGYFYAPQWFLSEVDLVHIRLPEYTPGCDADPAKVACDYQPYDLDKIANREFA 267
Query: 236 DKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+ + L+KN +++ A +N + + I +K R + L +PD+ ++WL
Sbjct: 268 ESGSPAADLIKNFQWTNADQNTVARYIRQDKMSRDEAAKKWLDANPDVWRSWL 320
>gi|288574115|ref|ZP_06392472.1| Substrate-binding region of ABC-type glycine betaine transport
system [Dethiosulfovibrio peptidovorans DSM 11002]
gi|288569856|gb|EFC91413.1| Substrate-binding region of ABC-type glycine betaine transport
system [Dethiosulfovibrio peptidovorans DSM 11002]
Length = 302
Score = 139 bits (349), Expect = 5e-31, Method: Composition-based stats.
Identities = 46/298 (15%), Positives = 91/298 (30%), Gaps = 30/298 (10%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL 62
K+LA+ +F +I + S V +T+ M +++LE GY + K+
Sbjct: 10 KVLALGIFSLLLTIGASSV--SAKEVTVGAKNFTEQYVVGEMMALLLENG-GYDVSKKMG 66
Query: 63 A-VPVTFRSLKNKGIDIFMGYWYPSLEKFIA-----------------PYLEEGSIKLVA 104
+T +L + IDI+ Y + ++ LE I +
Sbjct: 67 TGSSITRTALTSGQIDIYAEYTGTAWPLYLKHDEKVGDPKELYEKVKAEDLERNGIVWLD 126
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYG--IEPGNEGNQRILDMINNN 162
+ + LA+ S ++ +Y +I NE I +I
Sbjct: 127 RSKINNTFALAIRKGDAEKLGTSISELTEYNNSHPEEIIFGIGSEFNERPDGIPGIIETY 186
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
L + V +++ ++ L ++
Sbjct: 187 GIELTTGQRKLMD----IGLTFEAIDRGQIDVAMAYPTDGKLVKFDLLVLEDDKKFF--P 240
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNIK-FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++ VR ++LD P++ +L I E+ + V R L
Sbjct: 241 AYNLCVTVRKEFLDANPDVVEILAPISELDNETMQELNYKVDAVGLPADVVAREYLEE 298
>gi|89098817|ref|ZP_01171698.1| probable glycine betaine/carnitine/choline ABC transporter
[Bacillus sp. NRRL B-14911]
gi|89086493|gb|EAR65613.1| probable glycine betaine/carnitine/choline ABC transporter
[Bacillus sp. NRRL B-14911]
Length = 517
Score = 139 bits (349), Expect = 5e-31, Method: Composition-based stats.
Identities = 37/301 (12%), Positives = 83/301 (27%), Gaps = 32/301 (10%)
Query: 2 YKILAVCL-FLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
KI V + R + + WT+ + S +++ Y ++
Sbjct: 221 KKISFVLIPIAALALFFGLRGGNEEDTIVLGGKRWTEQYILPHILSEYIKDQTDYNVRVQ 280
Query: 61 L--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP------------------YLEEGSI 100
P+ ++L+ ID+++ Y L + Y EE +
Sbjct: 281 EGLGDTPILTQALRKGDIDMYVDYTGTGLLTIMKESYNPEDSPEDIYNKVKKGYSEEYQL 340
Query: 101 KLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN 160
+ + Y LAVN + + G E
Sbjct: 341 EWMEPLGFQNTYALAVNQETDSEYGAEKISDLSPV-SSELRFGGPADFYEREDGFTAFTE 399
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISG 220
R ++A+ + + ++ + L +
Sbjct: 400 TYNLDFSEKRTLDAN------LMYSAVQEGEVDAIPAFTTDGRIVRFGLKVLEDDRQFF- 452
Query: 221 FGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
++R + L K P + ++ + + S EM + +K++ + V L+
Sbjct: 453 -PPYYAAPIIRQETLAKYPELEEVINRLGNQISEEEMAEMNARVDLDKENPREVAIDFLK 511
Query: 279 T 279
Sbjct: 512 Q 512
>gi|311031582|ref|ZP_07709672.1| putative glycine/betaine/carnitine/choline ABC transporter,
permease/substrate-binding protein Opu [Bacillus sp.
m3-13]
Length = 507
Score = 139 bits (349), Expect = 6e-31, Method: Composition-based stats.
Identities = 30/300 (10%), Positives = 85/300 (28%), Gaps = 32/300 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
++ + + F +A + + + + M +++EE + ++
Sbjct: 212 KALIIGIVVVLLFLSPFAVMKATEADLVISGKIGAEPDIIINMYKLLIEEETDLRVELRP 271
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL-----------------EEGSIKL 102
+R+LKNK IDI+ Y ++ + E+ +
Sbjct: 272 SLGNTSFVYRALKNKDIDIYPEYSGTAIVTLLEEEPVSIDDEEVFEQAKKGLMEQDELVY 331
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
+ Y LA+ + K E D +
Sbjct: 332 LQPMGFNNTYALAIPVDFAEQNDINTISDLNGAKN--------EIKAGFTLEFSDRQDGY 383
Query: 163 KFSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
+ + + + +++ + N + ++ ++ L + +
Sbjct: 384 LGIQEVYGITFPNLTTMQAKLRYQAVENGDVNLVDAYSTDAEIKQFDLRVLEDDKNLF-- 441
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++R + LD+ P + +L + + + +M + + + L
Sbjct: 442 PPYQGAALLRKETLDEHPELEEILNQLENQINDDEMRDMNYQVTVEGKTTYEAAKEFLEK 501
>gi|294616228|ref|ZP_06696022.1| glycine betaine/carnitine/choline ABC transporter,
substrate-binding protein [Enterococcus faecium E1636]
gi|291590910|gb|EFF22625.1| glycine betaine/carnitine/choline ABC transporter,
substrate-binding protein [Enterococcus faecium E1636]
Length = 512
Score = 139 bits (349), Expect = 6e-31, Method: Composition-based stats.
Identities = 40/301 (13%), Positives = 92/301 (30%), Gaps = 21/301 (6%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
LA + L Y + A + M ++E+ + +K
Sbjct: 212 TLAAVVCLFGGVSLYQSALFKNETITIAGKLGAEPEILIQMYKELIEDNTKTEVELKPNF 271
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIA-PYLEEGSIKLVAENLQGAKYML------ 114
F +L IDI+ + LE + P + + + A+ +L
Sbjct: 272 GKTSFLFNALDQGQIDIYPEFTGTVLESLVKVPEAMKSADLTKEKTYDEAEELLNKQFDM 331
Query: 115 ------AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
A + +S+ + + KK + +D + K +
Sbjct: 332 TLLKPMAYQNTYALAVKRSFANEHQLKKISDLAAISDQIKAGFTLEFIDRSDGYKGIQEA 391
Query: 169 FRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
+ L +S + + + N + ++ + ++ L +
Sbjct: 392 YGLNFSSVQSMEPSLRYQAINNGDVNIVDAYSTDSQLKEYDLVTLEDDRGLF--PAYQGA 449
Query: 228 TVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLK 285
+++ D+ + P I + L + K + +M + K+ V R L+ + L+K
Sbjct: 450 PLMKKDFAKEHPEIVKALNKLSGKITEDQMIDMNYQVNVEKKKPTEVARIFLK-NEGLVK 508
Query: 286 N 286
Sbjct: 509 E 509
>gi|325570088|ref|ZP_08146013.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, membrane protein [Enterococcus
casseliflavus ATCC 12755]
gi|325156916|gb|EGC69087.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, membrane protein [Enterococcus
casseliflavus ATCC 12755]
Length = 513
Score = 139 bits (349), Expect = 6e-31, Method: Composition-based stats.
Identities = 31/301 (10%), Positives = 86/301 (28%), Gaps = 36/301 (11%)
Query: 4 ILAVCLFLTTFSISYARDAD-SCTPVRFADTGWTDIAATTAMTSVILEEI-LGYKTNIKL 61
I + L +S+++ + + A ++ M ++E+ + ++
Sbjct: 211 ITLAAIILLIGGVSFSQSGFFAPKTITIAGKLGSEPDILINMYKELIEQEDPDAQVELEP 270
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYP---------------------SLEKFIAPYLEEG 98
F +L N +DI+ + + + + ++
Sbjct: 271 NFGKTSFLFSALDNGQVDIYPEFTGTVLESLVEVPEELASQKLDSDETYTEAVNLLQDQF 330
Query: 99 SIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ L+ Y LAV + K + + +E + +
Sbjct: 331 EMTLLQPMAYQNTYALAVKKEFAEENGLTTISDLKKIENKIKAGFTLE-FIDRTDGYAGI 389
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ + + + N + ++ + L +E+
Sbjct: 390 QELYGLDF------PSVQSMEPALRYQAINNGDINLLDAYSTDSELRQYGLVILEDDQEL 443
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
+++ + + P + R L+ + K + +EM + ++ V RT
Sbjct: 444 F--PPYQGAPLMKEAFAKEHPEVVRALEKLAGKITEEQMSEMNYQVNVEGKNPAEVARTF 501
Query: 277 L 277
L
Sbjct: 502 L 502
>gi|308177305|ref|YP_003916711.1| osmoprotectant (glycine betaine/carnitine/choline/L-proline) ABC
transporter substrate-binding protein [Arthrobacter
arilaitensis Re117]
gi|307744768|emb|CBT75740.1| osmoprotectant (glycine betaine/carnitine/choline/L-proline) ABC
transporter, substrate-binding protein [Arthrobacter
arilaitensis Re117]
Length = 297
Score = 139 bits (349), Expect = 6e-31, Method: Composition-based stats.
Identities = 55/273 (20%), Positives = 105/273 (38%), Gaps = 10/273 (3%)
Query: 16 ISYARDADSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNK 74
DA + V A W + AT+ + +LE+ GY N++ V F L +
Sbjct: 27 AGGEGDAQASKEVTIAVFNGWDEGIATSELWKAVLEDK-GYDVNLEYSDVAPLFSGLASG 85
Query: 75 GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKY 134
D+ W P K I+ + +K +AVN I S +D+A
Sbjct: 86 DYDLTTDVWLPVTHKDYLDK-FGTDIEDLGAWNDESKLTVAVNKDAP---IDSLEDLAAN 141
Query: 135 KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAV 194
+ KI GIE G + + + + + L+ + +S A ++++ V
Sbjct: 142 ADKFNNKIVGIEAGAGLTRTMEESV-IPDYGLEDMDFVTSSTSAMLTELKTATDAGENIV 200
Query: 195 FLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVAL 254
WEPH S + L + G E+ ++ R+ + P ++ + K S+
Sbjct: 201 VTLWEPHWAYSSFPVKNLEDPKGSLGNTES-IHNYSRAGFAKDFPEVADWMGGFKLSLDE 259
Query: 255 ENEM--MKLILNNKQDRQFVGRTMLRTHPDLLK 285
+ + + N+ D + + R + H D+++
Sbjct: 260 LYTLEKLLFVDNDTDDYEPLVRQWMEEHADIVE 292
>gi|292669576|ref|ZP_06603002.1| choline transporter [Selenomonas noxia ATCC 43541]
gi|292648785|gb|EFF66757.1| choline transporter [Selenomonas noxia ATCC 43541]
Length = 513
Score = 139 bits (349), Expect = 6e-31, Method: Composition-based stats.
Identities = 31/301 (10%), Positives = 73/301 (24%), Gaps = 33/301 (10%)
Query: 2 YKILAVCLFLTTFSISYARDA--DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+I ++S V A T+ + +++E G + I
Sbjct: 218 KRIAYAGAAAVLIAVSSVTYGFFARADVVHIATKPMTEQLIMGEILKMVIEHNTGLEARI 277
Query: 60 KL---LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIA---------------PYLEEGSIK 101
+++ DI+ Y + Y ++
Sbjct: 278 TAGVGGGTSNIHPGMESGAFDIYPEYTGTGWNMVLKEETKYSEELFPKLTEEYERRFHMR 337
Query: 102 LVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMIN 160
+ +AV + ++ +G E E +
Sbjct: 338 WAGMYGFNDTFGIAVRREIAEQY--DLHRYSDLRRAAPDLTFGAEYDFFERADGYPALCE 395
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISG 220
+ + + N V + + + + L
Sbjct: 396 AYGLTFGR------TTDLDIGLKYQAFANGQIDVMIIFTTDGQLAAADAVVLADDRNFF- 448
Query: 221 FGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
VVR++ L++ P + L+ + S M + + ++ + V LR
Sbjct: 449 -PSYRCGNVVRAEVLERHPELGDALEKLTGTISDEEMAAMNYAVESEGREPRAVAEEFLR 507
Query: 279 T 279
Sbjct: 508 A 508
>gi|260575137|ref|ZP_05843138.1| Substrate-binding region of ABC-type glycine betaine transport
system [Rhodobacter sp. SW2]
gi|259022759|gb|EEW26054.1| Substrate-binding region of ABC-type glycine betaine transport
system [Rhodobacter sp. SW2]
Length = 313
Score = 139 bits (349), Expect = 6e-31, Method: Composition-based stats.
Identities = 41/289 (14%), Positives = 86/289 (29%), Gaps = 24/289 (8%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGY 82
+S P++ WT TT + + +LEE GY + F LK +D+ M
Sbjct: 24 ESTDPIKLTLHDWTGQLITTNIMAAVLEEA-GYNVELVQADYLAQFAGLKTGDLDVAMEI 82
Query: 83 WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA--LGIKSYQDIAKYKKELGA 140
W + ++ + + EG + E AK G+ ++ +
Sbjct: 83 WATTGQEAMDKAIAEGGVVSFGETGMLAKEEWWYPLYMKEKCPGLPDWKALNDCAALFAT 142
Query: 141 KIY---GIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLS 197
G G D L + ++ A F+++ + P +
Sbjct: 143 PDTAPKGRYLGGPVTWGGFDEERIAALGLNFEVIHAGTDAAMFAELEAAYQRQDPILLWV 202
Query: 198 WEPHPINSDLNIHYLPGGEE------------------ISGFGEASVYTVVRSDYLDKCP 239
+ PH ++ G ++ V + DK P
Sbjct: 203 YAPHWSQQKYQGEWVEFPTYEAACYTDPAWGSNPAATHDCGKPFGPIWKVGWAGLADKWP 262
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
++ ++ + M+ + + + V + + K W+
Sbjct: 263 GAAKAVQAFTIDNTAMSAMIAKVDLDGVALEDVVDEWMTANEATWKPWI 311
>gi|283797245|ref|ZP_06346398.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Clostridium sp.
M62/1]
gi|291075094|gb|EFE12458.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Clostridium sp.
M62/1]
gi|295092390|emb|CBK78497.1| Periplasmic glycine betaine/choline-binding (lipo)protein of an
ABC-type transport system (osmoprotectant binding
protein) [Clostridium cf. saccharolyticum K10]
Length = 526
Score = 139 bits (349), Expect = 6e-31, Method: Composition-based stats.
Identities = 33/278 (11%), Positives = 81/278 (29%), Gaps = 14/278 (5%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLK 72
+ +R A +++ M S +E LG A V S++
Sbjct: 244 FSASLFQGKKTADIRIASMDFSENEIFAYMLSEAIERDLGIDVETIPDLGAGSVCLSSIE 303
Query: 73 NKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAK--YMLAVNDVGFALGIKSYQD 130
+ ID ++ Y + ++ ++++G K Y L V + +
Sbjct: 304 SGEIDGYVDYTGTLYVNILKNPASSDVEQVYTDSVKGMKEQYGLDVLNSLNVNNTYTLST 363
Query: 131 IAKYKKE------LGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
+ ++ K G ++ + + + S
Sbjct: 364 TKEIAEQYGLETISDLKKIGGPVTICSTLAFMNREDGLLGVEDRYGINFNKVGVDGSARY 423
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
+ V ++ + ++ L + + V R + +++ P I+ +
Sbjct: 424 TALMSGEGQVIDAYSTDGLLKKFDLVILEDDQGVF--PPYYAVPVFREEIMEQYPEIADV 481
Query: 245 LKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ + S E+ L+ Q + V L +
Sbjct: 482 TEALADVLSTDTMAELNYLVDEEGQKAEEVAHNFLVEN 519
>gi|69249960|ref|ZP_00605071.1| Binding-protein-dependent transport systems inner membrane
component:Substrate-binding region of ABC-type glycine
betaine transport system [Enterococcus faecium DO]
gi|257878046|ref|ZP_05657699.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecium 1,230,933]
gi|257881169|ref|ZP_05660822.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecium 1,231,502]
gi|257889757|ref|ZP_05669410.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecium 1,231,410]
gi|257892306|ref|ZP_05671959.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecium 1,231,408]
gi|258616459|ref|ZP_05714229.1| Glycine betaine/carnitine/choline ABC transporter, substrate
binding and permease protein [Enterococcus faecium DO]
gi|260559095|ref|ZP_05831281.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecium C68]
gi|261207630|ref|ZP_05922315.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecium TC 6]
gi|293556792|ref|ZP_06675355.1| glycine betaine/carnitine/choline ABC transporter,
substrate-binding protein [Enterococcus faecium E1039]
gi|293563448|ref|ZP_06677897.1| glycine betaine/carnitine/choline ABC transporter, glycine
betaine/carnitine/choline-binding protein [Enterococcus
faecium E1162]
gi|293568139|ref|ZP_06679475.1| glycine betaine/carnitine/choline ABC transporter, glycine
betaine/carnitine/choline-binding protein [Enterococcus
faecium E1071]
gi|294623602|ref|ZP_06702442.1| glycine betaine/carnitine/choline ABC transporter, glycine
betaine/carnitine/choline-binding protein [Enterococcus
faecium U0317]
gi|314938059|ref|ZP_07845369.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecium
TX0133a04]
gi|314941955|ref|ZP_07848816.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecium TX0133C]
gi|314948791|ref|ZP_07852163.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecium TX0082]
gi|314951810|ref|ZP_07854849.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecium TX0133A]
gi|314991784|ref|ZP_07857242.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecium TX0133B]
gi|314995825|ref|ZP_07860912.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecium
TX0133a01]
gi|68194049|gb|EAN08599.1| Binding-protein-dependent transport systems inner membrane
component:Substrate-binding region of ABC-type glycine
betaine transport system [Enterococcus faecium DO]
gi|257812274|gb|EEV41032.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecium 1,230,933]
gi|257816827|gb|EEV44155.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecium 1,231,502]
gi|257826117|gb|EEV52743.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecium 1,231,410]
gi|257828685|gb|EEV55292.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecium 1,231,408]
gi|260074852|gb|EEW63168.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecium C68]
gi|260078013|gb|EEW65719.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecium TC 6]
gi|291589129|gb|EFF20941.1| glycine betaine/carnitine/choline ABC transporter, glycine
betaine/carnitine/choline-binding protein [Enterococcus
faecium E1071]
gi|291596985|gb|EFF28196.1| glycine betaine/carnitine/choline ABC transporter, glycine
betaine/carnitine/choline-binding protein [Enterococcus
faecium U0317]
gi|291601124|gb|EFF31413.1| glycine betaine/carnitine/choline ABC transporter,
substrate-binding protein [Enterococcus faecium E1039]
gi|291604709|gb|EFF34194.1| glycine betaine/carnitine/choline ABC transporter, glycine
betaine/carnitine/choline-binding protein [Enterococcus
faecium E1162]
gi|313589929|gb|EFR68774.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecium
TX0133a01]
gi|313593595|gb|EFR72440.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecium TX0133B]
gi|313596089|gb|EFR74934.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecium TX0133A]
gi|313599207|gb|EFR78052.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecium TX0133C]
gi|313642634|gb|EFS07214.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecium
TX0133a04]
gi|313644857|gb|EFS09437.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecium TX0082]
Length = 512
Score = 139 bits (349), Expect = 7e-31, Method: Composition-based stats.
Identities = 40/301 (13%), Positives = 92/301 (30%), Gaps = 21/301 (6%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
LA + L Y + A + M ++E+ + +K
Sbjct: 212 TLAAVVCLFGGVSLYQSALFKNETITIAGKLGAEPEILIQMYKELIEDNTKTEVELKPNF 271
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIA-PYLEEGSIKLVAENLQGAKYML------ 114
F +L IDI+ + LE + P + + + A+ +L
Sbjct: 272 GKTSFLFNALDQGQIDIYPEFTGTVLESLVKVPEAMKSADLTKEKTYDEAEELLNKQFDM 331
Query: 115 ------AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
A + +S+ + + KK + +D + K +
Sbjct: 332 TLLKPMAYQNTYALAVKRSFANEHQLKKISDLAAISDQIKAGFTLEFIDRSDGYKGIQEA 391
Query: 169 FRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
+ L +S + + + N + ++ + ++ L +
Sbjct: 392 YGLNFSSVQSMEPSLRYQAINNGDVNIVDAYSTDSQLKEYDLVTLEDDRGLF--PAYQGA 449
Query: 228 TVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLK 285
+++ D+ + P I + L + K + +M + K+ V R L+ + L+K
Sbjct: 450 PLMKKDFAKEHPEIVKALNKLSGKITEDQMIDMNYQVNVEKKKPTEVARIFLK-NEGLVK 508
Query: 286 N 286
Sbjct: 509 E 509
>gi|294792583|ref|ZP_06757730.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Veillonella sp.
6_1_27]
gi|294456482|gb|EFG24845.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Veillonella sp.
6_1_27]
Length = 513
Score = 139 bits (349), Expect = 7e-31, Method: Composition-based stats.
Identities = 33/305 (10%), Positives = 72/305 (23%), Gaps = 35/305 (11%)
Query: 1 MYK-ILAVCLFLTTFSISYARDADSCTPVR-----FADTGWTDIAATTAMTSVILEEILG 54
M + + +T ++ A C V+ A T+ + ++E+
Sbjct: 214 MKRYTIIFVSIMTIIAMGIGGWAMYCRHVKTDVIHIATKPMTEQLILGNVLKELIEKKTD 273
Query: 55 YKTNIKL---LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP---------------YLE 96
+ ++ + DI+ Y + + Y E
Sbjct: 274 LTVEVTEGVGGGTSNIQPAMLSGQFDIYPEYTGTAWSAVLKRTDAYDESLFNELSQAYKE 333
Query: 97 EGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
+ + + V Y + V + G
Sbjct: 334 KYNFEWVGMYGFNNTYGIGVRNEIAQSYGVKTYSDLARIAPSLTLG-GEYDFFGREDGYP 392
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ S +A++ + S I L
Sbjct: 393 GLQRVYGMSF------KATKDMDIGLKYTAISRGEVDAMPIFTTDGQLSIAPITVLQD-- 444
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ + VVRS+ L P + +L+++ + +M + Q V
Sbjct: 445 DKHLYPSYMAGNVVRSEVLIAHPELRPVLESLNHTITDQEMAKMNYAVETEHQLPADVAH 504
Query: 275 TMLRT 279
L
Sbjct: 505 KFLVE 509
>gi|290580468|ref|YP_003484860.1| putative choline ABC transporter osmoprotectant binding protein
[Streptococcus mutans NN2025]
gi|254997367|dbj|BAH87968.1| putative choline ABC transporter osmoprotectant binding protein
[Streptococcus mutans NN2025]
Length = 502
Score = 139 bits (349), Expect = 7e-31, Method: Composition-based stats.
Identities = 34/307 (11%), Positives = 87/307 (28%), Gaps = 39/307 (12%)
Query: 1 MYKILAVCLFLTTFSISY-----ARDADSCTPVRFADTGWTDIAATTAMTSVILEE--IL 53
+ KI+ + + + + S + A + M ++E+ L
Sbjct: 202 LKKIMLAFFIMLIGLGASYLPNVIKTSQSQKEIVIAGKMGPEPEVLINMYKELIEQDSHL 261
Query: 54 GYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE----------------- 96
K + +LK IDI+ + + +
Sbjct: 262 SVKVKPNFGKTTFLYEALKKGDIDIYPEFTGTITSSLLKNPPKTSNNPQTVYEEARDGIL 321
Query: 97 -EGSIKLVAENLQGAKYMLAVND-VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQR 154
+ ++ + Y +AV G+KS D+ K +
Sbjct: 322 KQDNLVYLKPMKYQNTYAVAVKKSFAKEKGLKSISDLKKVENTAK---------AGFTLE 372
Query: 155 ILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPG 214
D + NK + L + + ++ + ++ + ++ L
Sbjct: 373 FNDRKDGNKGLKSLYGLNLQVSTMEPALRYQAIKSGDIDITDAYSTDSEIKEYDLVTLKD 432
Query: 215 GEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFV 272
+ + + + L K P + ++L + K + + ++M + + + V
Sbjct: 433 NKNLF--PPYQGAPLFKKKLLQKHPELKKILNRLAGKITESQMSDMNYQVKVKGKSAKTV 490
Query: 273 GRTMLRT 279
L+
Sbjct: 491 AHHYLKK 497
>gi|294619252|ref|ZP_06698727.1| glycine betaine/carnitine/choline ABC transporter, substrate
binding and permease protein [Enterococcus faecium
E1679]
gi|291594503|gb|EFF25905.1| glycine betaine/carnitine/choline ABC transporter, substrate
binding and permease protein [Enterococcus faecium
E1679]
Length = 512
Score = 139 bits (349), Expect = 7e-31, Method: Composition-based stats.
Identities = 39/301 (12%), Positives = 87/301 (28%), Gaps = 21/301 (6%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
LA + L Y + A + M ++E+ + +K
Sbjct: 212 TLAAVVCLFGGVSLYQSALFKNETITIAGKLGAEPEILIQMYKELIEDNTKTEVELKPNF 271
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIA-------PYLEEGSIKLVAENLQGAKYML 114
F +L IDI+ + LE + L + AE L ++ +
Sbjct: 272 GKTSFLFNALDQGQIDIYPEFTGTVLESLVKVPEAMKSANLTKEKTYDEAEELLNKQFDM 331
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPG------NEGNQRILDMINNNKFSLKG 168
+ + + E K +D + K +
Sbjct: 332 TLLKPMAYQNTYALAVKRSFANEHQLKKISDLAAISDQIKAGFTLEFIDRSDGYKGIQEA 391
Query: 169 FRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
+ L +S + + + N + ++ + ++ L +
Sbjct: 392 YGLNFSSVQSMEPSLRYQAINNGDVNIVDAYSTDSQLKEYDLVTLEDDRGLF--PAYQGA 449
Query: 228 TVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLK 285
+++ D+ + P I + L + K + +M + K+ V R L+ + L+K
Sbjct: 450 PLMKKDFAKEHPEIVKALNKLSGKITEDQMIDMNYQVNVEKKKPTEVARIFLK-NEGLVK 508
Query: 286 N 286
Sbjct: 509 E 509
>gi|238018393|ref|ZP_04598819.1| hypothetical protein VEIDISOL_00218 [Veillonella dispar ATCC 17748]
gi|237864864|gb|EEP66154.1| hypothetical protein VEIDISOL_00218 [Veillonella dispar ATCC 17748]
Length = 510
Score = 139 bits (349), Expect = 7e-31, Method: Composition-based stats.
Identities = 33/305 (10%), Positives = 72/305 (23%), Gaps = 35/305 (11%)
Query: 1 MYK-ILAVCLFLTTFSISYARDADSCTPVR-----FADTGWTDIAATTAMTSVILEEILG 54
M + + +T +++ + C V+ A T+ + ++E
Sbjct: 211 MKRYTIIFLSTMTLIAMAVGGWSLYCRHVKADVIHIATKPMTEQLILGNVLKELIEHKTN 270
Query: 55 YKTNIKL---LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP---------------YLE 96
+ +++ DI+ Y + + Y E
Sbjct: 271 LTVEVTEGVGGGTSNIQPAMRTGQFDIYPEYTGTAWSAVLKRTDAYDESLFNELSQAYKE 330
Query: 97 EGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
E + + V Y + V + G
Sbjct: 331 EYNFEWVGMYGFNNTYGIGVRNELAQTYGLKSYSDLARIAPSLTLG-GEYDFFGREDGYA 389
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ +A++ V + S I L
Sbjct: 390 GLQRVYNMRF------KATKDMDIGLKYAAISRGDVDVMPIFTTDGQLSVAPITVLQD-- 441
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ + VVRS+ L P + +L+++ + +M + Q V
Sbjct: 442 DKHLYPSYMAGNVVRSEILIAHPELRTVLESLNHTITDQEMAKMNYAVETEHQLPADVAH 501
Query: 275 TMLRT 279
L
Sbjct: 502 KFLVE 506
>gi|313896570|ref|ZP_07830119.1| ABC transporter, substrate-binding protein, QAT family [Selenomonas
sp. oral taxon 137 str. F0430]
gi|312974755|gb|EFR40221.1| ABC transporter, substrate-binding protein, QAT family [Selenomonas
sp. oral taxon 137 str. F0430]
Length = 515
Score = 139 bits (349), Expect = 7e-31, Method: Composition-based stats.
Identities = 29/301 (9%), Positives = 73/301 (24%), Gaps = 34/301 (11%)
Query: 2 YKILAVCLFLTTFSISYA---RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
+ L ++ + +R A T+ M +++E+
Sbjct: 219 KSLGIAAGLLVFIGLAGGVLYGMFGTKDVIRIATKPMTEQLVMGEMLKLLIEQDTNLSVR 278
Query: 59 IKL---LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP---------------YLEEGSI 100
+ ++++ D++ Y + Y E +
Sbjct: 279 LTPGVGGGTSNIQPAMESGDFDLYPEYTGTGWNMVLKEKRTYDEHLFPLLTAAYHERYHM 338
Query: 101 KLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMI 159
+ + + + V + + A +G E E +
Sbjct: 339 RWIGMYGFNDTFGIVVRRDIAKQY--GLRTYSDLVNAPPALTFGAEYDFFEREDGYAALC 396
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
S + + + V + + + L
Sbjct: 397 RAYGLSF------ARTMDLDIGLKYKALESGQIDVMTIFTTDGQLAASDAVVLQDDRGFF 450
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
VVR + L P ++ L+ + + A M + + ++ + V L
Sbjct: 451 --PSYRCGNVVREEVLTTHPELADTLEKLTDTITDAEMARMNYAVESAGREPRAVAEEHL 508
Query: 278 R 278
R
Sbjct: 509 R 509
>gi|222081908|ref|YP_002541273.1| glycine betaine ABC transporter [Agrobacterium radiobacter K84]
gi|221726587|gb|ACM29676.1| glycine betaine ABC transporter [Agrobacterium radiobacter K84]
Length = 297
Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats.
Identities = 40/300 (13%), Positives = 89/300 (29%), Gaps = 31/300 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-- 58
M + + S + A + P++ +T+ M + +LE+ G++
Sbjct: 3 MKLSILSAIAAAVMVTSAFQPAAAAEPIKVGSKNFTEQYILAEMYAALLEKA-GFQVERK 61
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIA----------------PYLEEGSIKL 102
I L + ++L ID++ Y +L + Y ++ ++
Sbjct: 62 INLGGTMIAQQALTTGAIDLYPEYTGTALSAVVKGTMSTDPDKVYNDVKDFYAKQFNLTW 121
Query: 103 VAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINN 161
+ Y++ V +K+ D+AK G + + +
Sbjct: 122 LKPTGINNGYVIVVRQETADADKLKTLSDLAKV--SGTLVFGGGAEFPDRADGLPGLKRV 179
Query: 162 NKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
K F+ A V + L + +
Sbjct: 180 YGAEFKEFKQF-----AKLGLRYDALAQKDIDVVNGAATDWQIGAKGLVALDDDKGLF-- 232
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+ VVR LD P + +L+ + A + + N+ ++ + V L+
Sbjct: 233 PPYYLAPVVRQQALDANPKMKDVLEALGSHLDNATMRVLNAKVENDHEEPKDVAEAFLKE 292
>gi|24373523|ref|NP_717566.1| ABC transporter, periplasmic substrate-binding protein, putative
[Shewanella oneidensis MR-1]
gi|24347832|gb|AAN55010.1|AE015639_5 ABC transporter, periplasmic substrate-binding protein, putative
[Shewanella oneidensis MR-1]
Length = 303
Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats.
Identities = 40/265 (15%), Positives = 82/265 (30%), Gaps = 4/265 (1%)
Query: 28 VRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSL 87
+R T + T A+ + ++ ++G + + F LK ID+ W P
Sbjct: 25 IRLGVTDLSFHRVTAAVVAQVM-HLMGKRVELSYALHEANFNRLKLGQIDLLCSAWLPHS 83
Query: 88 EKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKY--KKELGAKIYGI 145
+E + V D + +D+ K K+ + I GI
Sbjct: 84 HGVYRQEVETQVTTRELGLHYEPYALWGVPDYVPEDAVSRIEDLLKPEVKQRMRPIIQGI 143
Query: 146 EPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINS 205
G + +++ + G++ ++ + + W P ++
Sbjct: 144 GEGAGITRFSKNIMEQYGLTAAGYQFRTGTQADCVAAFESAVSVRDWVIVPLWHPQFLHH 203
Query: 206 DLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC-PNISRLLKNIKFSVALENEMMKLILN 264
I L + + G + +V + P ++L NI S + E+ +
Sbjct: 204 QYGIRDLQDPKGLLGGKDKAVLLARERELAINFSPEQIQVLDNIVLSNQIVAELDYAVNR 263
Query: 265 NKQDRQFVGRTMLRTHPDLLKNWLI 289
L +P L WL
Sbjct: 264 QGMTEDEAAANWLAVNPSHLTTWLA 288
>gi|315649177|ref|ZP_07902267.1| Substrate-binding region of ABC-type glycine betaine transport
system [Paenibacillus vortex V453]
gi|315275396|gb|EFU38754.1| Substrate-binding region of ABC-type glycine betaine transport
system [Paenibacillus vortex V453]
Length = 304
Score = 138 bits (348), Expect = 8e-31, Method: Composition-based stats.
Identities = 36/171 (21%), Positives = 75/171 (43%), Gaps = 4/171 (2%)
Query: 127 SYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRD 186
+ A +++ +I GI+PG + I + ++LIE S A + + +
Sbjct: 36 NSGSTASLGEQVKHEIIGIDPGAGIMKATAAAIEEYGLTD--WKLIEGSGAAMTATLNKA 93
Query: 187 QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLK 246
+N P + W PH + + ++ YL +++ G E ++T+ R + P + L
Sbjct: 94 IKNEDPIIITGWTPHWMFAKYDLKYLEDPKKVFGEAE-EIHTIARLGLKEDHPEAYKFLS 152
Query: 247 NIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQ 297
N K++ ++M I QD + + ++ + + WL GV +G+
Sbjct: 153 NFKWTSDDMGQIMTAI-QEGQDPEAAAKEWADSNTEKVDAWLEGVQPVEGK 202
Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 1/107 (0%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFM 80
+F+ W A+T + VI+E+ LGYK + + + N +D +
Sbjct: 197 QPVEGKTFKFSYVAWDSEIASTNLLKVIMEDKLGYKVEALQVEAGPMWTGVANGDVDATV 256
Query: 81 GYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKS 127
W P + ++ + N++G K L V A I+
Sbjct: 257 AAWLPLTHADYWDK-FKDKVEDLGANMEGVKTGLVVPSYVEANSIED 302
>gi|322805954|emb|CBZ03519.1| L-proline glycine betaine binding ABC transporter protein proX (TC
3.A.1.12.1) / Osmotic adaptation [Clostridium botulinum
H04402 065]
Length = 528
Score = 138 bits (348), Expect = 8e-31, Method: Composition-based stats.
Identities = 39/298 (13%), Positives = 93/298 (31%), Gaps = 34/298 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--L 61
+L + + L D V +T+ + +++ K L
Sbjct: 238 VLGILIVLALIVPKLIGLGD--KKVVIGSKNFTEQIILGNILEELIDNKTDIDVETKLNL 295
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFI-----------------APYLEEGSIKLVA 104
V+F +LK GID+++ Y + + + E+ I+++
Sbjct: 296 GGTQVSFNALKTGGIDMYVEYTGTAYGNMLNIKKPNRDRQAVYNTVKKEFKEKFGIEVLN 355
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYG-IEPGNEGNQRILDMINNNK 163
Y++A + + + I G I+ +
Sbjct: 356 PIGFNNTYVMATTKEIAQKY--NLKTTSDLANVSSKMIVGPTIEFANREDGIIGLNKAYN 413
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+ K + I+ + NN + ++ + N+ L + F +
Sbjct: 414 MNFKAVKPIDG------GLRYKALVNNETQIIDAFTTDGLIEQFNLVLLED--DKRFFPD 465
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+V+ + L K P + +L + + + ++ + NK+D + V + L+
Sbjct: 466 YYAVPIVKEETLKKFPELREVLGKLDGRITDEKMRKLNYEVDVNKRDPKQVAKEFLQK 523
>gi|282849643|ref|ZP_06259027.1| ABC transporter, substrate-binding protein, QAT family [Veillonella
parvula ATCC 17745]
gi|282580580|gb|EFB85979.1| ABC transporter, substrate-binding protein, QAT family [Veillonella
parvula ATCC 17745]
Length = 510
Score = 138 bits (348), Expect = 8e-31, Method: Composition-based stats.
Identities = 38/306 (12%), Positives = 83/306 (27%), Gaps = 37/306 (12%)
Query: 1 MYK-ILAVCLFLTTFSISYARDADSCTPVR-----FADTGWTDIAATTAMTSVILEEILG 54
M + + +T ++ A C V+ A T+ + ++E+
Sbjct: 211 MKRYTIIFVSIMTLIAMGIGGWAMYCRHVKTDVIHIATKPMTEQLILGNVLKELIEKKTD 270
Query: 55 YKTNIKL---LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP---------------YLE 96
+ ++ + DI+ Y + + Y E
Sbjct: 271 LTVEVTEGVGGGTSNIQPAMLSGQFDIYPEYTGTAWSAVLKRTDAYDESLFNELSQAYKE 330
Query: 97 EGSIKLVAENLQGAKYMLAVNDVGFA-LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRI 155
+ + + V Y + V + G+K+Y ++A+ L + G
Sbjct: 331 KYNFEWVGMYGFNNTYGIGVRNEIAQTYGVKTYSNLARIAPSL--TLGGEYDFFGREDGY 388
Query: 156 LDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG 215
+ S +A++ + S I L
Sbjct: 389 AGLQRVYGMSF------KATKDMDIGLKYTAISRGEVDAMPIFTTDGQLSIAPITVLQD- 441
Query: 216 EEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVG 273
+ + VVRS+ L P + +L+++ + +M + Q V
Sbjct: 442 -DKHLYPSYMAGNVVRSEVLIAHPELRPVLESLNHTITDQEMAKMNYAVETEHQLPADVA 500
Query: 274 RTMLRT 279
L
Sbjct: 501 HKFLVE 506
>gi|22538264|ref|NP_689115.1| amino acid ABC transporter amino acid-binding protein/permease
[Streptococcus agalactiae 2603V/R]
gi|25012124|ref|NP_736519.1| hypothetical protein gbs2089 [Streptococcus agalactiae NEM316]
gi|76799099|ref|ZP_00781288.1| choline transporter [Streptococcus agalactiae 18RS21]
gi|77413216|ref|ZP_00789414.1| amino acid ABC transporter, amino acid-binding protein/permease
protein [Streptococcus agalactiae 515]
gi|22535178|gb|AAN00988.1|AE014288_6 amino acid ABC transporter, amino acid-binding protein/permease
protein [Streptococcus agalactiae 2603V/R]
gi|24413668|emb|CAD47748.1| Unknown [Streptococcus agalactiae NEM316]
gi|76585545|gb|EAO62114.1| choline transporter [Streptococcus agalactiae 18RS21]
gi|77160756|gb|EAO71869.1| amino acid ABC transporter, amino acid-binding protein/permease
protein [Streptococcus agalactiae 515]
Length = 504
Score = 138 bits (348), Expect = 8e-31, Method: Composition-based stats.
Identities = 31/276 (11%), Positives = 76/276 (27%), Gaps = 33/276 (11%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGIDIFMGYWY 84
+ A T+ M ++E+ K +K +++LK+ ID++ +
Sbjct: 236 TITVAGKLGTEPDILINMYKELIEDQTDIKVKLKPNFGKTTFLYQALKSGDIDLYPEFTG 295
Query: 85 PSLEKFIAPYLE------------------EGSIKLVAENLQGAKYMLAVNDVGFALGIK 126
+ + + + L++ Y +AV
Sbjct: 296 TITSSLLKNPPKVSNNPKQVYNLAKNGILKQDKLSLLSPMAYQNTYAVAVKKDYAEANQL 355
Query: 127 SYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRD 186
K +L A + + + + +L L + +
Sbjct: 356 KNISDLKKLDKLKAGFTL--EFKDREDGSIGLQKHYGLNLDISTLEP-------ALRYQA 406
Query: 187 QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLK 246
+ + ++ + L + F ++R D + K P + + L
Sbjct: 407 INSKDVNIIDAYSTDSELIQYQLQILKD--DKHLFPPYQGAPLLRQDTIKKYPQVKKALN 464
Query: 247 NI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ + EM + + V + L+ H
Sbjct: 465 KLAGHITEKEMQEMNYQVAVKHKSAATVAKQYLKAH 500
>gi|283768868|ref|ZP_06341779.1| ABC transporter, substrate-binding protein, QAT family [Bulleidia
extructa W1219]
gi|283104654|gb|EFC06027.1| ABC transporter, substrate-binding protein, QAT family [Bulleidia
extructa W1219]
Length = 513
Score = 138 bits (348), Expect = 8e-31, Method: Composition-based stats.
Identities = 39/298 (13%), Positives = 84/298 (28%), Gaps = 33/298 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
+++ + L + + A ++ + S +++ K I
Sbjct: 221 LISGLIILMSLFSFGLYQNGKSDTIHIASKPTSEGYILAELVSELIKNDTKLKVKITHGV 280
Query: 62 -LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP---------------YLEEGSIKLVAE 105
++ D++ Y S + + Y + +
Sbjct: 281 GGGTANIHPAIVKGDFDMYPEYTGTSWQIVLKKTNPYKDENFDVLDQEYRNKYRLTWKGM 340
Query: 106 NLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNK 163
Y L + IK++ D+ KY KE +G E + +
Sbjct: 341 VGFNNTYSLGIRADLAKKYHIKTFSDLVKYAKEFT---FGAEYDFFGREDGYKALTKAYQ 397
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+ + + + V + SD I L + +
Sbjct: 398 LKF------KKAIDMDNGLKYQALYDRKIDVMTVFTTDGQISDPRIVVLEDDLGF--YPK 449
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
VVR + L K P ++ +L+ +K + K + K++ + V R LR
Sbjct: 450 YKAGMVVREEILRKHPELNAVLEKLKGLIDEKTMAFLNKKVEIGKENPRDVARKFLRE 507
>gi|83951956|ref|ZP_00960688.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Roseovarius nubinhibens ISM]
gi|83836962|gb|EAP76259.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Roseovarius nubinhibens ISM]
Length = 319
Score = 138 bits (348), Expect = 8e-31, Method: Composition-based stats.
Identities = 40/312 (12%), Positives = 89/312 (28%), Gaps = 25/312 (8%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+ L A DS P+ W+ + +T I+EE G
Sbjct: 5 RSLPIALLTSGLALSGPALAEDSSDPIVIPVHNWSSQIVMSNVTGQIMEEA-GLAVEYVT 63
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG- 120
+ S++ + + M W + +E+G I V ++ +
Sbjct: 64 TDSQAVYESVRLGDVTLEMEVWEGAFGASFRAAMEKGGIVDVGDHDAVTREDWWYPMWTK 123
Query: 121 -FALGIKSYQDIAKYKKELGAKIYGIEPGN---EGNQRILDMINNNKFSLKGFRLIEASE 176
G+ ++ + ++ G + + + + S
Sbjct: 124 EACPGLPDWKALNDCAEKFATPETGDKGRYLDGPVDWLKHGKERVEALDMNFTVINAGSA 183
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG-------------------EE 217
A +++I + + P V +W P+ + ++ +
Sbjct: 184 AALWAEIGSAEADKRPVVVFNWTPNFAEAVWPGEFVEFPEWEEGCDTDPAVGPNPDALYD 243
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTML 277
+ K P LL+ I F+ EM KL+ ++ + + L
Sbjct: 244 CGNPSAGYLKKAAWEGMEAKWPTGYCLLEAISFTNPQIAEMAKLVDTDELEPEEAAAEWL 303
Query: 278 RTHPDLLKNWLI 289
+ D + W+
Sbjct: 304 DANTDAWEPWVA 315
>gi|307330680|ref|ZP_07609818.1| Substrate-binding region of ABC-type glycine betaine transport
system [Streptomyces violaceusniger Tu 4113]
gi|306883659|gb|EFN14707.1| Substrate-binding region of ABC-type glycine betaine transport
system [Streptomyces violaceusniger Tu 4113]
Length = 325
Score = 138 bits (348), Expect = 9e-31, Method: Composition-based stats.
Identities = 47/318 (14%), Positives = 106/318 (33%), Gaps = 35/318 (11%)
Query: 4 ILAVCLFLTTFSISYARDAD------------SCTPVRFADTGWTDIAATTAMTSVILEE 51
++AV F+ + AD V + W + A+ +LE
Sbjct: 9 LMAVAGIAAVFTATGCGAADMTKQSSPYANVGGAKSVTLSVQSWVGAQSNVAVAQYLLEH 68
Query: 52 ILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAK 111
LGY+ + + + +L +D + W + Y+++ + + L
Sbjct: 69 ELGYRVDTVQVDEIPAWDALSQGRVDAILEDWG--HPEQEQRYVKDKKLIVPGGGLGVTG 126
Query: 112 Y-MLAVNDVGFA--LGIKSYQDIAKYKKELGAKIYGIEPG---NEGNQRILDMINNNKFS 165
+ V + +++++ KY K G + + D
Sbjct: 127 HIGWWVPKYFADKHPDVLNWKNLNKYAKTFKTAESGGKGQLLDGSPSYVTNDKALVKNLK 186
Query: 166 LKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI------- 218
L + SE A +QI++ + P + +EP + + + + + +
Sbjct: 187 LNYQIVFSGSEAAQITQIKQFAKGKKPFLTYWYEPQWLFNQVPMVEVKLPKYTDKCANEG 246
Query: 219 --------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQ 270
+ + + +D+ + S LK ++ +NE+ +LI + Q
Sbjct: 247 TKDPESIDCAYPTTPLQKYLNADFAKQGGKASAFLKKFHWTKDDQNEVSELIASKGMSAQ 306
Query: 271 FVGRTMLRTHPDLLKNWL 288
+ + HPD+ K W+
Sbjct: 307 DAAKKWVEAHPDVWKKWM 324
>gi|146319254|ref|YP_001198966.1| periplasmic glycine betaine/choline-binding (lipo)protein of an ABC
transporter (osmoprotectant binding protein)
[Streptococcus suis 05ZYH33]
gi|146321457|ref|YP_001201168.1| periplasmic glycine betaine/choline-binding (lipo)protein of an ABC
transporter (osmoprotectant binding protein)
[Streptococcus suis 98HAH33]
gi|253752293|ref|YP_003025434.1| glycine/betaine ABC transporter [Streptococcus suis SC84]
gi|253754119|ref|YP_003027260.1| glycine/betaine ABC transporter [Streptococcus suis P1/7]
gi|145690060|gb|ABP90566.1| Periplasmic glycine betaine/choline-binding (lipo)protein of an
ABC-type transport system (osmoprotectant binding
protein) [Streptococcus suis 05ZYH33]
gi|145692263|gb|ABP92768.1| Periplasmic glycine betaine/choline-binding (lipo)protein of an
ABC-type transport system (osmoprotectant binding
protein) [Streptococcus suis 98HAH33]
gi|251816582|emb|CAZ52219.1| ABC-type glycine betaine transport system protein [Streptococcus
suis SC84]
gi|251820365|emb|CAR46942.1| ABC-type glycine betaine transport system protein [Streptococcus
suis P1/7]
gi|292558886|gb|ADE31887.1| putative osmoprotectant-binding protein [Streptococcus suis GZ1]
gi|319758687|gb|ADV70629.1| periplasmic glycine betaine/choline-binding (lipo)protein of an
ABC-type transport system (osmoprotectant binding
protein) [Streptococcus suis JS14]
Length = 503
Score = 138 bits (348), Expect = 9e-31, Method: Composition-based stats.
Identities = 35/303 (11%), Positives = 83/303 (27%), Gaps = 36/303 (11%)
Query: 3 KILAVCLFLTTFSISYARDAD---SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
K + + L +T F++ + S + A + M +++E+ K I
Sbjct: 206 KTILLALLVTLFTVGASYVPMLNFSTKQLVIAGKLGAEPEILINMYKLLIEDQTDIKVEI 265
Query: 60 KL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEE-------------------G 98
K + +LK+ IDI+ Y + +
Sbjct: 266 KPNFGKTSFLYEALKSGSIDIYPEYTGTITSTLLKNSPMDLSTNPEEVYTYAKEAILEQD 325
Query: 99 SIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ +A Y LAV + ++ + D
Sbjct: 326 GLMYLAPMAFQNTYALAVTEDYAQKNGLEKISDLAKVQQ--------TAVAGFSLEFNDR 377
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ N + L + + ++ + ++ + L +
Sbjct: 378 EDGNIGLKNLYNLQLNVKTMEPALRYEAIKSGNVQIIEAYSTDSKVVTYKLKILED--DK 435
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F ++ + L++ P + ++L + S +M + + + V R
Sbjct: 436 QLFPPYQAAPLLSKETLEQYPELEQVLGVLAGNISTEEMTQMNYAVDVEGKSAEQVAREY 495
Query: 277 LRT 279
L
Sbjct: 496 LEQ 498
>gi|197284310|ref|YP_002150182.1| glycine betaine transporter periplasmic subunit [Proteus mirabilis
HI4320]
gi|194681797|emb|CAR41029.1| putative glycine betaine/L-proline ABC transporter,
substrate-binding protein [Proteus mirabilis HI4320]
Length = 331
Score = 138 bits (348), Expect = 9e-31, Method: Composition-based stats.
Identities = 43/318 (13%), Positives = 98/318 (30%), Gaps = 35/318 (11%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLA 63
+ L + +S A V+ + ++ T + + LE LGY IK +
Sbjct: 9 TVLSATLISTQLSAADLPGKGVSVQPVQSTISEETFQTLIVNKALE-KLGYTVQPIKEVD 67
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
V + S+ N W P + + + + A ++
Sbjct: 68 YNVAYSSIANGDATFMAVSWVPLHNSQYEAAGGDNTFYRKGDYVVNAAQGYLIDKKTAEK 127
Query: 124 GIKSYQDIAKYKK---------ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
+ + K K + A + G PG + I + + +
Sbjct: 128 YNITNIEQFKDPKIAKLFDANGDGKADLTGCNPGWGCEEAINNHLKAYDLEKS-VTHNQG 186
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGE-------------- 216
+ A + + P + +W P+ I+ ++ +L
Sbjct: 187 NYAAMMADTITRYKEGKPIFYYTWTPYWISDVLKPGKDVVWLQVPFSSLPGDDKTDTTLP 246
Query: 217 --EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV-- 272
+ GF ++++ + + P ++L + +K SVA N + N ++ + +
Sbjct: 247 NGKNYGFPPSTMHIAANKKWAEANPAAAKLFEIMKVSVADINAQNLRMHNGQKSQADIER 306
Query: 273 -GRTMLRTHPDLLKNWLI 289
++ H W+
Sbjct: 307 HANAWIKAHQKTFDGWVE 324
>gi|239945530|ref|ZP_04697467.1| putative glycine betaine-binding lipoprotein [Streptomyces
roseosporus NRRL 15998]
gi|239991998|ref|ZP_04712662.1| putative glycine betaine-binding lipoprotein [Streptomyces
roseosporus NRRL 11379]
gi|291448985|ref|ZP_06588375.1| glycine betaine-binding lipoprotein [Streptomyces roseosporus NRRL
15998]
gi|291351932|gb|EFE78836.1| glycine betaine-binding lipoprotein [Streptomyces roseosporus NRRL
15998]
Length = 324
Score = 138 bits (348), Expect = 9e-31, Method: Composition-based stats.
Identities = 47/290 (16%), Positives = 103/290 (35%), Gaps = 18/290 (6%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKG 75
S V + W A A+ +L+E LGY+ ++ + +L
Sbjct: 33 ASPFAAPAGVKTVTLSVQSWVGAQANVAVAEQLLKEELGYRVDLVQTDEVPAWDALSQGR 92
Query: 76 IDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA--LGIKSYQDIAK 133
+D + W ++ E+ +I + V + ++++ K
Sbjct: 93 VDAILEDWG-HPDQEKLYIDEKKTIVRGGDLGVTGHIGWYVPKYWADKNPDVTDWKNLNK 151
Query: 134 YKKELGAKIYGIEPG---NEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
Y +EL G + + D+ L + SE A +QI++ +
Sbjct: 152 YAEELRTAESGGKGQLMDGSPSYVTNDVALVKNLDLDYKVVFAGSEAAQITQIQQFAKEK 211
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEI------------SGFGEASVYTVVRSDYLDKC 238
P + ++P + +++ + + E + + + +D+ ++
Sbjct: 212 KPFLSYWYQPQWLFNEVPMVEVKLPEYTDECAAKDPKDIDCAYPTTPLQKFLNADFAERG 271
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+ S LK +S +NE+ ++I + K Q + + HPD+ K WL
Sbjct: 272 GDASAFLKKFHWSEKDQNEVSEMIASQKLTPQEAAKRWIERHPDVWKKWL 321
>gi|322392409|ref|ZP_08065870.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Streptococcus peroris
ATCC 700780]
gi|321144944|gb|EFX40344.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Streptococcus peroris
ATCC 700780]
Length = 505
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 33/303 (10%), Positives = 86/303 (28%), Gaps = 39/303 (12%)
Query: 3 KILAVCLFLTTFSISYARDAD-----SCTPVRFADTGWTDIAATTAMTSVILEEILG--Y 55
+ + + + + + A + M +++E+
Sbjct: 207 RTIVAAFAVMFLGLGASYAPSMIPNKEKENLVIAGKLGPEPEILMNMYKLLIEQNTNMTV 266
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------E 97
+++LK IDI+ + E + P + +
Sbjct: 267 TVKPNFGKTDFLYQALKKGDIDIYPEFSGTITESLLQPSPKVSHDPEKVYEVARDGILKQ 326
Query: 98 GSIKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
+ + Y +AV G+K+ D+ K + +L
Sbjct: 327 DQLAFLKPMAYQNTYAIAVPRTIAQEYGLKTISDLKKVEGQLK---------AGFTLEFN 377
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
D + NK + L + + ++ + ++ + ++ L
Sbjct: 378 DRKDGNKGLQSLYGLNLNVATMEPALRYQAIQSGDIQITDAYSTDAEIARYDLVVLED-- 435
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F +++ L K P + +L + K + + ++M + + + V R
Sbjct: 436 DKQLFPPYQGAPLMKEALLKKHPELEGILNKLAGKITESQMSQMNYQVGVEGKSAEEVAR 495
Query: 275 TML 277
L
Sbjct: 496 KFL 498
>gi|307132315|ref|YP_003884331.1| glycine betaine ABC transporter periplasmic-binding protein
[Dickeya dadantii 3937]
gi|33321798|gb|AAQ06632.1| osmoprotectant transport protein OusBX [Erwinia chrysanthemi]
gi|306529844|gb|ADM99774.1| glycine betaine transporter subunit; periplasmic-binding component
of ABC superfamily [Dickeya dadantii 3937]
Length = 332
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 45/325 (13%), Positives = 89/325 (27%), Gaps = 36/325 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKLL 62
LA+ L+T + V+ + ++ T + S LE LGY +
Sbjct: 8 TLALTTVLSTGLFAADDLPGKGITVKPVQSTISEETFQTLLVSKALE-KLGYTVDKPSEV 66
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
V + S+ N W P + + + GA ++
Sbjct: 67 DYNVGYTSIANGDATFTAVNWQPLHDDMYQAAGGDAKFYRQGVYVSGAAQGYLIDKKTAE 126
Query: 123 LGIKSY---------QDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+ + + A + G PG + I I +
Sbjct: 127 RYHITRLDQLKDPKLAKLFDTNGDGKADLTGCNPGWGCDSVINHQIQAYGLGDT-VNHNQ 185
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHP----INSDLNIHYLPGGEE------------ 217
+ A + + +F +W P+ + ++ +L
Sbjct: 186 GNYAALIADTIARYKQGKSVIFFTWTPYWVSDVLVPGRDVVWLQVPFSSLPGKQKGTDTK 245
Query: 218 -----ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNN---KQDR 269
GF ++ V D+ +K P ++L +K +A N + +QD
Sbjct: 246 LPNGANYGFPVNNMRIVANKDWAEKNPAAAKLFAIMKLPLADINAQNLRMHQGEASQQDI 305
Query: 270 QFVGRTMLRTHPDLLKNWLIGVTTF 294
+ + H WL
Sbjct: 306 ERHVNGWINAHQAQFDGWLNAARAA 330
>gi|322388356|ref|ZP_08061960.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Streptococcus infantis
ATCC 700779]
gi|321141028|gb|EFX36529.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Streptococcus infantis
ATCC 700779]
Length = 506
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 32/303 (10%), Positives = 89/303 (29%), Gaps = 39/303 (12%)
Query: 3 KILAVCLFLTTFSISYARDAD-----SCTPVRFADTGWTDIAATTAMTSVILEEILG--Y 55
+ + + + + + A + M +++EE
Sbjct: 207 RTIVSTFAVMVLGLGVSYVPSMIPNKEKENLVIAGKLGPEPEILMNMYKLLIEENTDMTV 266
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------E 97
+++LK IDI+ + E + + +
Sbjct: 267 TVKPNFGKTDFLYQALKKGDIDIYPEFSGTVTESLLQSSPQVGHDPEKVYEVARDGIAKQ 326
Query: 98 GSIKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
+ + Y +AV G+K+ D+ K + +L A N+
Sbjct: 327 DQLAFLKPMAYQNTYAIAVPKKIAQEYGLKTISDLKKVEGQLKAGFTL--EFNDREDGNK 384
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ + +L + + + ++ + ++ + ++ L
Sbjct: 385 GLQSVYGLNLNVATMEP-------ALRYQAIQSGDIQITDAYSTDAEIARYDLVVLED-- 435
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F ++++ L+K P + +L + K + + ++M + + + V R
Sbjct: 436 DKQLFPPYQGAPLMKAKLLEKHPELEAILNKLAGKITESQMSQMNYQVGVEGKSAEEVAR 495
Query: 275 TML 277
L
Sbjct: 496 EFL 498
>gi|226331045|ref|ZP_03806563.1| hypothetical protein PROPEN_04975 [Proteus penneri ATCC 35198]
gi|225201840|gb|EEG84194.1| hypothetical protein PROPEN_04975 [Proteus penneri ATCC 35198]
Length = 331
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 44/318 (13%), Positives = 101/318 (31%), Gaps = 35/318 (11%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLA 63
+ L + +S A V+ + ++ T + + LE+ LGY IK +
Sbjct: 9 TVLSATLISTQLSAADLPGKGISVQPVQSTISEETFQTLIVNKALEQ-LGYTVQPIKEVD 67
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
V + S+ N W P A + + + + A ++
Sbjct: 68 YNVAYSSIANGDATFMAVSWVPLHNSQYAAAGGDNTFYRKGDYVVNAAQGYLIDKKTAEK 127
Query: 124 GIKSYQDIAKYKK---------ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
+ + K K + A + G PG + I + + +
Sbjct: 128 YNITNIEQLKDPKIAKLFDADGDGKADLTGCNPGWGCEEAINNHLKAYGLEKS-VTHNQG 186
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGE-------------- 216
+ A + + P + +W P+ I+ ++ +L
Sbjct: 187 NYAAMMADTITRYKEGKPIFYYTWTPYWISDVLKPGKDVVWLQVPFSSLPGDDKTDTTLA 246
Query: 217 --EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV-- 272
+ GF ++++ + ++ P ++L + +K SVA N + N ++ + +
Sbjct: 247 NGKNYGFPPSTMHIAANKKWAEENPAAAKLFEVMKVSVADINAQNLRMHNGQKSQADIER 306
Query: 273 -GRTMLRTHPDLLKNWLI 289
++ H W+
Sbjct: 307 HANAWIKAHQKTFDGWIE 324
>gi|76787841|ref|YP_330659.1| glycine betaine/carnitine/choline ABC transporter
permease/substrate-binding protein [Streptococcus
agalactiae A909]
gi|77405087|ref|ZP_00782186.1| amino acid ABC transporter, amino acid-binding protein/permease
protein [Streptococcus agalactiae H36B]
gi|77408157|ref|ZP_00784903.1| amino acid ABC transporter, amino acid-binding protein/permease
protein [Streptococcus agalactiae COH1]
gi|76562898|gb|ABA45482.1| glycine betaine/carnitine/choline ABC transporter,
permease/substrate-binding protein [Streptococcus
agalactiae A909]
gi|77173257|gb|EAO76380.1| amino acid ABC transporter, amino acid-binding protein/permease
protein [Streptococcus agalactiae COH1]
gi|77176230|gb|EAO79000.1| amino acid ABC transporter, amino acid-binding protein/permease
protein [Streptococcus agalactiae H36B]
gi|319746147|gb|EFV98420.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Streptococcus agalactiae ATCC 13813]
Length = 504
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 31/276 (11%), Positives = 76/276 (27%), Gaps = 33/276 (11%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGIDIFMGYWY 84
+ A T+ M ++E+ K +K +++LK+ ID++ +
Sbjct: 236 TITVAGKLGTEPDILINMYKELIEDQTDIKVKLKPNFGKTTFLYQALKSGDIDLYPEFTG 295
Query: 85 PSLEKFIAPYLE------------------EGSIKLVAENLQGAKYMLAVNDVGFALGIK 126
+ + + + L++ Y +AV
Sbjct: 296 TITSSLLKNPPKVSNNPKQVYNLAKNGILKQDKLSLLSPMAYQNTYAVAVKKDYAEANQL 355
Query: 127 SYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRD 186
K +L A + + + + +L L + +
Sbjct: 356 KNISDLKKLDKLKAGFTL--EFKDREDGSIGLQKHYGLNLDISTLEP-------ALRYQA 406
Query: 187 QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLK 246
+ + ++ + L + F ++R D + K P + + L
Sbjct: 407 INSKDVNIIDAYSTDSELIQYQLQILKD--DKHLFPPYQGAPLLRQDTIKKYPQVKKALN 464
Query: 247 NI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ + EM + + V + L+ H
Sbjct: 465 KLAGHITEKEMQEMNYQVAVKHKSAATVAKQYLKAH 500
>gi|24379531|ref|NP_721486.1| putative choline ABC transporter, osmoprotectant binding protein
[Streptococcus mutans UA159]
gi|24377473|gb|AAN58792.1|AE014947_4 putative choline ABC transporter, osmoprotectant binding protein
[Streptococcus mutans UA159]
Length = 506
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 34/307 (11%), Positives = 86/307 (28%), Gaps = 39/307 (12%)
Query: 1 MYKILAVCLFLTTFSISY-----ARDADSCTPVRFADTGWTDIAATTAMTSVILEE--IL 53
+ KI+ + + + + S + A + M ++E+ L
Sbjct: 206 LKKIMLAFFIMLIGLGASYLPNVIKTSQSQKEIVIAGKMGPEPEVLINMYKELIEQDSHL 265
Query: 54 GYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE----------------- 96
K + +LK IDI+ + + +
Sbjct: 266 SVKVKPNFGKTTFLYEALKKGDIDIYPEFTGTITSSLLKNPPKTSNNPQTVYEEARDGIL 325
Query: 97 -EGSIKLVAENLQGAKYMLAVND-VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQR 154
+ ++ + Y +AV G+KS D+ K +
Sbjct: 326 KQDNLVYLKPMKYQNTYAVAVKKSFAKEKGLKSISDLKKVENTAK---------AGFTLE 376
Query: 155 ILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPG 214
D + NK + L + + ++ + ++ + ++ L
Sbjct: 377 FNDRKDGNKGLKSLYGLNLQVSTMEPALRYQAIKSGDIDITDAYSTDSEIKEYDLVTLKD 436
Query: 215 GEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFV 272
+ + + + L K P + ++L + K + ++M + + + V
Sbjct: 437 NKNLF--PPYQGAPLFKKKLLQKHPELKKILNRLAGKITENQMSDMNYQVKVKGKSAKTV 494
Query: 273 GRTMLRT 279
L+
Sbjct: 495 AHHYLKK 501
>gi|126698478|ref|YP_001087375.1| glycine betaine/carnitine/choline ABC transporter substrate-binding
protein [Clostridium difficile 630]
gi|115249915|emb|CAJ67734.1| ABC-type transport system, glycine betaine/carnitine/choline
permease [Clostridium difficile]
Length = 517
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 40/298 (13%), Positives = 91/298 (30%), Gaps = 31/298 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-- 58
+ I V + F + + + + +T+ + + ++E+ K
Sbjct: 224 LKVISVVLVVSMLFVVFSSSFSSKKDTITIGSKDYTEQLILGNVYAELVEKNTNLKVKKN 283
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEE----------------GSIKL 102
+ L V F ++K+ +D+++ Y L + + + L
Sbjct: 284 LNLGGSSVAFNAIKSGELDMYVDYTGTLLVNVMRHAPIKDADEAYNVVKDTMEKENQLTL 343
Query: 103 VAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINN 161
+ Y LA+ I + D+ KY KE ++ + +
Sbjct: 344 LDPLGFNNTYTLAMMPETAEKYGINTISDLTKYGKEFTFSPTL--EFENREDGLVGLSRD 401
Query: 162 NKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
K + + S NN V ++ + N+ L +
Sbjct: 402 YGLKFKDVKAMNGSLR------YTALDNNESQVIDAFLTDGLIKKFNLKILEDDKNFFV- 454
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+VR D L K P + +++ + K + E+ + + + V + L
Sbjct: 455 -PYYAAPLVREDTLKKYPELEKVMNMLSGKVNEETMRELNYQVDELGKSPEEVAHSFL 511
>gi|294794370|ref|ZP_06759506.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Veillonella sp.
3_1_44]
gi|294454700|gb|EFG23073.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Veillonella sp.
3_1_44]
Length = 513
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 33/305 (10%), Positives = 72/305 (23%), Gaps = 35/305 (11%)
Query: 1 MYK-ILAVCLFLTTFSISYARDADSCTPVR-----FADTGWTDIAATTAMTSVILEEILG 54
M + + +T ++ A C V+ A T+ + ++E+
Sbjct: 214 MKRYTIIFVSIMTLIAMGIGGWAMYCRHVKTDVIHIATKPMTEQLILGNVLKELIEKKTD 273
Query: 55 YKTNIKL---LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP---------------YLE 96
+ ++ + DI+ Y + + Y E
Sbjct: 274 LTVEVTEGVGGGTSNIQPAMLSGQFDIYPEYTGTAWSAVLKRTDAYDESLFNELSQAYKE 333
Query: 97 EGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
+ + + V Y + V + G
Sbjct: 334 KYNFEWVGMYGFNNTYGIGVRNEIAQTYGVKTYSDLARIAPSLTLG-GEYDFFGREDGYA 392
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ S +A++ + S I L
Sbjct: 393 GLQRVYGMSF------KATKDMDIGLKYTAISRGEVDAMPIFTTDGQLSIAPITVLQD-- 444
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ + VVRS+ L P + +L+++ + +M + Q V
Sbjct: 445 DKHLYPSYMAGNVVRSEVLIAHPELRPVLESLNHTITDQEMAKMNYAVETEHQLPADVAH 504
Query: 275 TMLRT 279
L
Sbjct: 505 KFLVE 509
>gi|312958930|ref|ZP_07773449.1| glycine betaine/L-proline ABC transporter [Pseudomonas fluorescens
WH6]
gi|311286700|gb|EFQ65262.1| glycine betaine/L-proline ABC transporter [Pseudomonas fluorescens
WH6]
Length = 297
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 40/304 (13%), Positives = 89/304 (29%), Gaps = 32/304 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K+ + + A +R +T+ +TS L GY T +
Sbjct: 1 MKKL--SLILGCVLLFAGIAQAAEKPVIRIGARVFTEQTLLAEITSQYLRTK-GYDTRVT 57
Query: 61 LL-AVPVTFRSLKNKGIDIFMGYWYPSLEKF---------------IAPYLEEGSIKLVA 104
+ + ++ +D+ Y SL + + + + ++
Sbjct: 58 GGLGSNLARSAQESGQLDLLWEYTGVSLVAYNHIDEKLDSAQSYARVKELDAKKGLVWLS 117
Query: 105 ENLQGAKYMLAVNDVGFALG-----IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI 159
+ Y LA+ + I + + + + + M+
Sbjct: 118 PSHFSNTYALALPEKVAKEHPEINSISDLTNAMAQDTKEHRLVALDTEFANRSDGLAGMV 177
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
+L + + RN L + + + L +
Sbjct: 178 KLYDMNLTRKN----TRQMDAGLVYTALRNGQVFAGLVYTTDGRLNAFKLKLLED--DKR 231
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
F + + V+R +YLD+ P ++ LK + F ++ + + + V L
Sbjct: 232 YFPDYTAAPVIRQEYLDQHPQLAAELKPLADLFDDETMRQLNARVDVDHESPSAVAADFL 291
Query: 278 RTHP 281
R HP
Sbjct: 292 RQHP 295
>gi|224475863|ref|YP_002633469.1| putative glycine betaine ABC transporter substrate-binding protein
[Staphylococcus carnosus subsp. carnosus TM300]
gi|222420470|emb|CAL27284.1| putative substrate binding component of ABC-type glycine betaine
transporter [Staphylococcus carnosus subsp. carnosus
TM300]
Length = 504
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 43/304 (14%), Positives = 89/304 (29%), Gaps = 35/304 (11%)
Query: 2 YKILAVCLFLTTFSISYARD---ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
KIL L + V A ++ + T M +++EE +
Sbjct: 207 KKILITLGALLIIVVLVIVIPLFGGKGDKVTIAGKLGSEPSIITNMYKILIEEETDDTVD 266
Query: 59 IK--LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPY-----------------LEEGS 99
+K + F +LK+ ID ++ + L + ++
Sbjct: 267 VKDGMGKTSFLFNALKSDDIDGYLEFTGTVLGELTKEPLKSKEEHKVYEQAKTSLEKKDK 326
Query: 100 IKLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ L+ Y LAV +K+ D+ K + E+ N+ +
Sbjct: 327 MTLLKPMKYNNTYALAVKRDFAEKHHLKTIGDLEKVEDEIKPGFTL--EFNDRPDGFKAV 384
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
R +E + + + ++ ++ L +
Sbjct: 385 SKAYDLHFNKIRTMEPKLR------YQAVKKGDINLIDAYSTDAELKQYDMVVLKD--DK 436
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F + + YL + P I + L + K + EM + +D V +
Sbjct: 437 HVFPPYQGAPLFKEKYLKEHPEIKKPLNKLAGKITDEEMQEMNYKVTVKNEDPYKVAKDY 496
Query: 277 LRTH 280
L+ H
Sbjct: 497 LKRH 500
>gi|242238344|ref|YP_002986525.1| glycine betaine transporter periplasmic subunit [Dickeya dadantii
Ech703]
gi|242130401|gb|ACS84703.1| Substrate-binding region of ABC-type glycine betaine transport
system [Dickeya dadantii Ech703]
Length = 331
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 41/334 (12%), Positives = 90/334 (26%), Gaps = 44/334 (13%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI-KLLA 63
L T S A V+ + + + T + S LE LGY + +
Sbjct: 8 TLAFGSLLTLSSYAADLPGKGITVKPIQSPMAEESFQTLLVSRALE-KLGYHVDTPSEVD 66
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
V + S+ N W P + + + GA ++
Sbjct: 67 YNVGYTSIANGDATFTAVNWQPLHSDMYRAAGGDNTFYRQGTYVSGAAQGYLIDRKTAEQ 126
Query: 124 GIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
+ + + A + G PG I + + +
Sbjct: 127 YHITRIDQLKDTKLAQLFDTNGDGKADLTGCTPGWGCEAVINHQLLAYQLEQT-VTHNQG 185
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEP----HPINSDLNIHYLPGGEE------------- 217
+ A + + P ++ +W P + ++ +L
Sbjct: 186 NYAAMIADTITRYKQGKPILYYTWTPYWVSDVLVPGRDVVWLQVPFSSLPGAQKNIDTRL 245
Query: 218 ----ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV- 272
GF +++ V + +K P +RL + +A N + + +Q +
Sbjct: 246 PNGANYGFPVNNMHIVANKAWAEKNPAAARLFAVMTLPIADINAQNLRMHQGEASQQDIQ 305
Query: 273 --GRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLE 304
++ H W+ + ++
Sbjct: 306 RHVDGWIKAHQAQFDGWVS--------NALSAVK 331
>gi|78063692|ref|YP_373600.1| ABC proline/glycine betaine transporter, periplasmic ligand binding
protein [Burkholderia sp. 383]
gi|77971577|gb|ABB12956.1| ABC proline/glycine betaine transporter, periplasmic ligand binding
protein [Burkholderia sp. 383]
Length = 345
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 48/318 (15%), Positives = 94/318 (29%), Gaps = 42/318 (13%)
Query: 26 TPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYP 85
V FA W + T + I+E+ G KT++ + T +L + I+ W
Sbjct: 33 KTVHFAGITWESGSFATEVLRQIMEKGYGCKTDVVPGSTAATETALARNDLQIWAEQWTG 92
Query: 86 SLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA-----------LGIKSYQDIAKY 134
E + G V D G+ S D+ KY
Sbjct: 93 RSEITAKAVSSGAVKLIGDTLPGGTTEGWFVPDYVVKGDPARNIKPVAPGLVSVDDLPKY 152
Query: 135 KKELGA-------KIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQ 187
K+ + G + + ++ K + A + I
Sbjct: 153 KQVFADEEEPDKGRFLNCPTGWDCERVNTRLLRVLKLDQSYTNFHPGTGAALDAAIASAY 212
Query: 188 RNNIPAVFLSWEPHPINSDLNIHYLPGGEE-----------------ISGFGEASVYTVV 230
+ P VF W P + + L S + + + V
Sbjct: 213 QRGAPIVFYYWGPAALMAKYKFTALKMPAYNEACWKTLRDESSTHQCASSYMVSRLTVGV 272
Query: 231 RSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIG 290
+ D P++ + ++F + N+ + + K D + L+T D+ K W+
Sbjct: 273 SKPFADANPDLVGVFGKVRFPMDFLNQTILEMTTKKIDGAAMATQFLKTRQDMWKQWVP- 331
Query: 291 VTTFDGQDPSRQLERFMN 308
D ++++ +
Sbjct: 332 ------ADVAQKIAGSLK 343
>gi|259046958|ref|ZP_05737359.1| choline transporter [Granulicatella adiacens ATCC 49175]
gi|259036401|gb|EEW37656.1| choline transporter [Granulicatella adiacens ATCC 49175]
Length = 505
Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats.
Identities = 35/304 (11%), Positives = 92/304 (30%), Gaps = 39/304 (12%)
Query: 3 KILAVCLFLTTFSISYARDAD-----SCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
K + L + + + + A + M +++EE K
Sbjct: 207 KTIFATFVLLFAGLGASFVSGMMPSMGQQTLIIAGKLGPEPEILANMYKLLIEENTKLKV 266
Query: 58 NIKL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL------------------EE 97
+K + +LK+ IDI+ + E + P ++
Sbjct: 267 EVKPNFGKTTFLYEALKSGDIDIYPEFTGTVTESLLKPAPSISHDPQEVFEAARDGILKQ 326
Query: 98 GSIKLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
+ + Y +AV +K+ D+ K + +L A N+
Sbjct: 327 DGLAFLKPMAYQNTYAVAVTRAVAEKYGLKTISDLKKVEGQLKAGFTL--EFNDREDGNR 384
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ + +L + + + ++ + ++ + ++ L
Sbjct: 385 GLQSKYGLNLNVATMEPSLR-------YQAIQSGDIQITDAYSTDAEITRYDLVVLED-- 435
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F +++ L + P + +L + K + + ++M + + + V R
Sbjct: 436 DKQLFPPYQGAPLMKEALLKQHPELEGVLNVLAGKITESQMSQMNYEVGVEGKSAETVAR 495
Query: 275 TMLR 278
L+
Sbjct: 496 EFLQ 499
>gi|309777455|ref|ZP_07672410.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
permease/periplasmic amine-binding protein
[Erysipelotrichaceae bacterium 3_1_53]
gi|308914769|gb|EFP60554.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
permease/periplasmic amine-binding protein
[Erysipelotrichaceae bacterium 3_1_53]
Length = 515
Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats.
Identities = 45/300 (15%), Positives = 81/300 (27%), Gaps = 34/300 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
IL +C+ + + A + A T+ M ++E+ + I
Sbjct: 221 ILLLCVLIAGCTSMLAI-PSKQDTIHIATKPMTEEFIIGEMLKQLIEDRTDLQVEITKGV 279
Query: 62 -LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP----------------YLEEGSIKLVA 104
++ D++ Y S + Y E +++
Sbjct: 280 GGGTSNIHPAIVKGDFDMYPEYTGTSWSFVLKKKEIPQHDILYKELVKEYKENYNLEWTG 339
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNK 163
Y +AV + A +G E E + M+ N
Sbjct: 340 LYGFNNTYGIAVTKETAQRY--HLKTYADLASVSSRLSFGAEYDYYERDDGYDAMVKAND 397
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
F + S L + SD NI L +
Sbjct: 398 F------HFKKSIDLDIGLKYDALLKGEVDTILVFTTDGRISDPNIVVLQDENNYFE--K 449
Query: 224 ASVYTVVRSDYLDKCPNISRLLK--NIKFSVALENEMMKLILNNKQDRQFVGRTML-RTH 280
T+VR + L P + +L+ N + S EM + ++ V R L + H
Sbjct: 450 YYAGTIVREETLSAYPQLRSVLELLNGQISEKEMAEMNNEVETKGRNEADVARDFLVKKH 509
>gi|257468775|ref|ZP_05632869.1| glycine betaine transport system permease protein [Fusobacterium
ulcerans ATCC 49185]
gi|317063030|ref|ZP_07927515.1| glycine betaine transport system permease [Fusobacterium ulcerans
ATCC 49185]
gi|313688706|gb|EFS25541.1| glycine betaine transport system permease [Fusobacterium ulcerans
ATCC 49185]
Length = 512
Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats.
Identities = 34/273 (12%), Positives = 75/273 (27%), Gaps = 31/273 (11%)
Query: 28 VRFADTGWTDIAATTAMTSVILEEILGYKTNIKL---LAVPVTFRSLKNKGIDIFMGYWY 84
+ A T+ M ++E + ++ D++ Y
Sbjct: 244 IHIATKPMTEQYILGEMLKELIEHDTDLTVKLTSGVGGGTTNIQLGMEAGKFDLYPEYTG 303
Query: 85 PSLEKFI---------------APYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQ 129
+ + Y EE + + Y LAVN + +
Sbjct: 304 TGWNQVLKEKGIYTEKFFGEMNKKYQEEFKMVWLGMYGFNNTYGLAVNKKTADKY--NLK 361
Query: 130 DIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQR 188
+ K + I+G E E + ++ + +
Sbjct: 362 TYSDLAKISDSLIFGAEYDFFEREDGYDALSKAYNMRF------SSTMDMDIGLKYQAMK 415
Query: 189 NNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI 248
+ V + + +I L ++S + +VR + L+ P + +L +
Sbjct: 416 DGKIDVMNIFTTDGQLAGADIVVLED--DLSFYPSYKAGNIVRIEVLEAHPELKDVLLKL 473
Query: 249 --KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+ + EM + + KQ+ V L
Sbjct: 474 ENTITDSDMAEMNYQVESMKQEPSNVAHKFLAE 506
>gi|229172973|ref|ZP_04300525.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus MM3]
gi|228610493|gb|EEK67763.1| Glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Bacillus cereus MM3]
Length = 503
Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats.
Identities = 29/279 (10%), Positives = 80/279 (28%), Gaps = 31/279 (11%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGIDIFMG 81
+ A ++ M ++E+ +K F +LK+ +DI+
Sbjct: 231 QKKDIVIAGKLGSEPEILIQMYKQLIEQDTDLHVELKPGLGKTAFVFEALKSGEVDIYPE 290
Query: 82 YWYPSLEKFIAPYL-----------------EEGSIKLVAENLQGAKYMLAVNDVGFALG 124
+ +L F+ ++ ++ ++ Y LA+
Sbjct: 291 FSGTALSTFVKEEPKSTNRDEVYEQARIGMEKKYNMVMLKPMEYNNTYALAMPKKIADQN 350
Query: 125 IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
+ + + +E + M + + +E
Sbjct: 351 NINTISDLGKIAQDAKVGFTLE-FADREDGYKGMQKLYNYKFLNVKTMEPKLR------Y 403
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
++ V ++ + L + + ++R + L K P + ++
Sbjct: 404 SAIQSGDVNVIDAYSTDSELEQYGLTVLKDDKGLF--PPYQGAPLLRKETLQKYPELEKV 461
Query: 245 LKNI--KFSVALENEMMKLILNNKQDRQFVGRTML-RTH 280
L + K + +M + N + + V + L + +
Sbjct: 462 LNTLSGKITDEEMRKMNYEVNVNGKSSEEVAKQFLQKEN 500
>gi|56807739|ref|ZP_00365604.1| COG1732: Periplasmic glycine betaine/choline-binding (lipo)protein
of an ABC-type transport system (osmoprotectant binding
protein) [Streptococcus pyogenes M49 591]
gi|209559415|ref|YP_002285887.1| L-proline glycine betaine binding ABC transporter protein proX /
Osmotic adaptation [Streptococcus pyogenes NZ131]
gi|209540616|gb|ACI61192.1| L-proline glycine betaine binding ABC transporter protein proX /
Osmotic adaptation [Streptococcus pyogenes NZ131]
Length = 508
Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats.
Identities = 33/297 (11%), Positives = 85/297 (28%), Gaps = 34/297 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--L 61
I + L + ++ ++ + V A + + ++E+ +K
Sbjct: 215 ITLLALLASYTPMALSQFSKGKDTVVIAGKLGAEPDILINLYKELIEDQSDISVELKSNF 274
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------EGSIKLV 103
+ +LK+ IDI+ + + + + L+
Sbjct: 275 GKTSFLYEALKSGDIDIYPEFTGTITSSLLRDKPPLSNDPKQVYEDAKKGIAKQDKLTLL 334
Query: 104 AENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
Y +A+ + I++ D+ + L D +
Sbjct: 335 KPFAYQNTYAVAMPEKLAKEYQIETISDLKAHADTLK---------AGFTLEFKDRADGY 385
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
K + L + + + ++ V ++ + ++ L + F
Sbjct: 386 KGMQSQYGLQLSVATMEPALRYQAIQSGDIQVTDAYSTDAEITKYHLKVLKD--DKQLFP 443
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
++++ L K P + +L + K + +M + D V R L
Sbjct: 444 PYQGAPLMKTSLLTKHPELKGILNQLAGKITEKEMQDMNYEVSVKGADANKVARDYL 500
>gi|323127201|gb|ADX24498.1| glycine betaine transport system permease protein [Streptococcus
dysgalactiae subsp. equisimilis ATCC 12394]
Length = 508
Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats.
Identities = 33/297 (11%), Positives = 85/297 (28%), Gaps = 34/297 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--L 61
I + L + ++ ++ + V A + + ++E+ +K
Sbjct: 215 ITLLALLASYTPMALSQFSKGKDTVVIAGKLGAEPDILINLYKELIEDQSDISVELKSNF 274
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------EGSIKLV 103
+ +LK+ IDI+ + + + + L+
Sbjct: 275 GKTSFLYEALKSGDIDIYPEFTGTITSSLLRDKPPLSNDPKQVYEDAKKGIAKQDKLTLL 334
Query: 104 AENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
Y +A+ + I++ D+ + L D +
Sbjct: 335 KPFAYQNTYAVAMPEKLAEEYQIETISDLKAHADTLK---------AGFTLEFKDRADGY 385
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
K + L + + + ++ V ++ + ++ L + F
Sbjct: 386 KGMQSQYGLQLSVATMEPALRYQAIQSGDIQVTDAYSTDAEITKYHLKVLKD--DKQLFP 443
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
++++ L K P + +L + K + +M + D V R L
Sbjct: 444 PYQGAPLMKTSLLTKHPELKGILNQLAGKITEKEMQDMNYKVSVKGADANKVARDYL 500
>gi|322375779|ref|ZP_08050291.1| choline transporter [Streptococcus sp. C300]
gi|321279487|gb|EFX56528.1| choline transporter [Streptococcus sp. C300]
Length = 511
Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats.
Identities = 38/303 (12%), Positives = 91/303 (30%), Gaps = 35/303 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDAD-SCTPVRFADTGWTDIAATTAMTSVILEEI--LGYKT 57
++ A+ L S S A A + A + M +++EE +
Sbjct: 214 IFSGFALVTILLGLSYSPALLAQKEKENLVIAGKLGPEPEILANMYKLLIEENTSMTATV 273
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------EGS 99
+ +LK IDI+ + E + P + +
Sbjct: 274 KPNFGKTSFLYEALKKGDIDIYPEFTGTVTESLLQPSPKVSHEPDQVYQVARDGIAKQDH 333
Query: 100 IKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ + Y +AV G+K+ D+ K + +L D
Sbjct: 334 LAYLKPMSYQNTYAVAVPKKIAQEYGLKTISDLKKVEGQLK---------AGFTLEFNDR 384
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ NK + L + + ++ + ++ + ++ L +
Sbjct: 385 EDGNKGLQSMYGLNLNVATMEPALRYQAIQSGDIQITDAYSTDAELARYDLQVLED--DK 442
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F +++ L K P + +L + K + + +++ + + + V +
Sbjct: 443 QLFPPYQGAPLMKEALLKKHPELETVLNKLAGKITESQMSQLNYQVGVEGKSAEQVAKEF 502
Query: 277 LRT 279
L+
Sbjct: 503 LQE 505
>gi|251782304|ref|YP_002996606.1| glycine betaine transport system permease [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
gi|242390933|dbj|BAH81392.1| glycine betaine transport system permease protein [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
Length = 508
Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats.
Identities = 33/297 (11%), Positives = 85/297 (28%), Gaps = 34/297 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--L 61
I + L + ++ ++ + V A + + ++E+ +K
Sbjct: 215 ITLLALLASYTPMALSQFSKGKDTVVIAGKLGAEPDILINLYKELIEDQSDISVELKSNF 274
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------EGSIKLV 103
+ +LK+ IDI+ + + + + L+
Sbjct: 275 GKTSFLYEALKSGDIDIYPEFTGTITSSLLRDKPPLSNDPKQVYEDAKKGIAKQDKLTLL 334
Query: 104 AENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
Y +A+ + I++ D+ + L D +
Sbjct: 335 KPFAYQNTYAVAMPEKLAEEYQIETISDLKAHADTLK---------AGFTLEFKDRADGY 385
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
K + L + + + ++ V ++ + ++ L + F
Sbjct: 386 KGMQSQYGLQLSVATMEPALRYQAIQSGDIQVTDAYSTDAEITKYHLKVLKD--DKQLFP 443
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
++++ L K P + +L + K + +M + D V R L
Sbjct: 444 PYQGAPLMKASLLTKHPELKGILNQLAGKITEKEMQDMNYKVSVKGADANKVARDYL 500
>gi|254467257|ref|ZP_05080668.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Rhodobacterales bacterium
Y4I]
gi|206688165|gb|EDZ48647.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Rhodobacterales bacterium
Y4I]
Length = 322
Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats.
Identities = 44/309 (14%), Positives = 95/309 (30%), Gaps = 27/309 (8%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSL 71
+ ++ A D TP+R + WT +T + +L E GYK + + +
Sbjct: 15 VSGAVEAADMGDVETPIRLSLNNWTGQRLSTYIAGGMLAEA-GYKVEYVEADLNALYEQI 73
Query: 72 KNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF--ALGIKSYQ 129
+ M W S + + G ++ + + A+ + G+ ++
Sbjct: 74 ATGEVHAMMEIWTTSDPEDYFSVRDAGRVEELGDLGLDARNGVVYPPYVAQMCPGLPDWE 133
Query: 130 DIAKYKKELGAKIYGIEPGN---EGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRD 186
+ A G + L + SE A + ++
Sbjct: 134 ALRDCAGIFSADGNGTRGRYLAYPESWGSPGADRIRALDLPFDVVAAESEAAMIEEFQQA 193
Query: 187 QRNNIPAVFLSWEPHPINSDLNIHYLPGGE------------------EISGFGEASVYT 228
++ P + W PH S + ++ + F V
Sbjct: 194 YKDKRPVIATFWAPHWAMSSYALQFVRLPKPEPSCYSDPSWGPNPKATGDCDFARGGVVK 253
Query: 229 VVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
S + ++ P +L+N + S+ + ++ L+ + Q R L + W+
Sbjct: 254 ASWSGFKERWPAAHEILRNYELSIWDQQPLIGLVDVRGETVQGAARGWLAVNRA---KWM 310
Query: 289 IGVTTFDGQ 297
V G+
Sbjct: 311 PAVEEATGK 319
>gi|262282511|ref|ZP_06060279.1| ABC transporter membrane-spanning permease [Streptococcus sp.
2_1_36FAA]
gi|262261802|gb|EEY80500.1| ABC transporter membrane-spanning permease [Streptococcus sp.
2_1_36FAA]
Length = 506
Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats.
Identities = 30/305 (9%), Positives = 90/305 (29%), Gaps = 39/305 (12%)
Query: 3 KILAVCLFLTTFSISYARDAD-----SCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
+ + + + + + A + M +++EE
Sbjct: 207 RTVFTAFAVLILGLGASYTPSLLPKQEKDHLVIAGKLGPEPEILMNMYKLLIEENTDITV 266
Query: 58 NIKL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------E 97
+K +++LK IDI+ + + P + +
Sbjct: 267 TVKPNFGKTDFLYQALKKGDIDIYPEFTGTITGTLLQPAPKVSNDAEEVFEAARDGIRKQ 326
Query: 98 GSIKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
++ L+ Y +AV +K+ D+ + +L A N+
Sbjct: 327 DNLVLLNHMAYQNTYAIAVPKSVAKEYNLKTIADLKAVQDKLKAGFTL--EFNDREDGNK 384
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ + +L + + + ++ + ++ + ++ L
Sbjct: 385 GLQSVYGLNLNVSTMEP-------ALRYQAIQSGDIQITDAYSTDAELARYDLQVLED-- 435
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F +++ L K P + +L + K + + +++ + + + V +
Sbjct: 436 DKQLFPPYQGAPLMKEALLKKHPELETVLNKLAGKITESQMSQLNYQVGVEGKPAEQVAK 495
Query: 275 TMLRT 279
L+
Sbjct: 496 EFLQE 500
>gi|168184712|ref|ZP_02619376.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Clostridium botulinum
Bf]
gi|237794978|ref|YP_002862530.1| glycine betaine/L-proline ABC transporter permease/glycine
betaine/L-proline-binding protein [Clostridium botulinum
Ba4 str. 657]
gi|182672213|gb|EDT84174.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Clostridium botulinum
Bf]
gi|229263173|gb|ACQ54206.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Clostridium botulinum
Ba4 str. 657]
Length = 527
Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats.
Identities = 43/298 (14%), Positives = 97/298 (32%), Gaps = 34/298 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--L 61
I+ VC+ L + V +T+ + ++++ K L
Sbjct: 237 IVGVCILLALVAPKILGMGH--KKVVIGSKNFTEQLILGNILEELIKDKTDIDVETKLNL 294
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFI-----------------APYLEEGSIKLVA 104
V+F +LK+ GID+++ Y + + + E+ I+++
Sbjct: 295 GGTQVSFNALKSGGIDMYVEYTGTAYGNILNIKEPNRDKDTVYNKVKKDFKEKFRIEVLN 354
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYG-IEPGNEGNQRILDMINNNK 163
Y +A + + + KE I G ++ +
Sbjct: 355 PMGFNNTYAMATTKEIAQKY--NLKTTSDLAKESSNMIAGPTIEFANREDGLIGLNKAYN 412
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+ KG I+ NN + ++ + N+ L + F +
Sbjct: 413 VNFKGVNPIDG------GLRYTALVNNETQIIDAFTTDGLIEQFNLVLLED--DKRFFPD 464
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+V+ + L K P + +L N+ + + ++ + NK+D + V + L+
Sbjct: 465 YYAVPIVKEETLKKFPELREVLGNLDGRITDEKMRKLNYEVDVNKRDPKQVAKEFLQK 522
>gi|91787055|ref|YP_548007.1| glycine betaine ABC transporter substrate-binding protein
[Polaromonas sp. JS666]
gi|91696280|gb|ABE43109.1| Substrate-binding region of ABC-type glycine betaine transport
system [Polaromonas sp. JS666]
Length = 293
Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats.
Identities = 39/298 (13%), Positives = 87/298 (29%), Gaps = 31/298 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-- 58
+ K LA+ + A A VR +T+ + + LE G KT
Sbjct: 3 IRKFLALWALAFATVVPLASQAQQ--VVRVGSKNFTEQFVLAEIYAQALEAA-GIKTEKK 59
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE---------------EGSIKLV 103
+ L + ++++ K ID + Y L + + ++
Sbjct: 60 LNLGGTLIAQKAMEEKQIDFYPEYTGTMLLAVLKQEPMTDPKAVYDKVKEAYAKMGFAVL 119
Query: 104 AENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK 163
++ Y++ V + KI + + +
Sbjct: 120 NQSNLNNGYVMVVRPETAQKYKLETLSDLAKAAK-NLKIGAGPEFRDRKDGLPGLKAKYD 178
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+ + + +N+ V + + S + + L + + +
Sbjct: 179 M------VFGEDLQMAIGLRYQALKNDQIQVVNGYSTDGMISAMKLKRLRD--DKNLWPP 230
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
V V+R + LD P + +L + +M + K + + V R L+
Sbjct: 231 YFVVPVIRREVLDANPKVGDVLNRVSALLDETTMAQMNYQVDGEKLEPKDVARDFLKA 288
>gi|223042893|ref|ZP_03612941.1| choline transporter [Staphylococcus capitis SK14]
gi|222443747|gb|EEE49844.1| choline transporter [Staphylococcus capitis SK14]
Length = 504
Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats.
Identities = 41/303 (13%), Positives = 92/303 (30%), Gaps = 35/303 (11%)
Query: 2 YKI---LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
KI L + + +I A + A ++ + T M +++E+ +
Sbjct: 207 KKIIITLGAIVLVILLAIVIPLFAQKGDKITLAGKLGSEPSVITNMYKILIEDETDDTVD 266
Query: 59 IK--LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP-----------------YLEEGS 99
+K + F +LK+ ID ++ + L + ++
Sbjct: 267 VKDGMGKTSFLFNALKSDDIDGYLEFTGTVLGELTKEDLKSKKEPAVYQQAKTSLEKKDH 326
Query: 100 IKLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ ++ Y LAV IK+ D+ K + +L N+ +
Sbjct: 327 MTMLKPMKYNNTYALAVKRDFAKKNNIKTIGDLQKVEDKLKPGFTL--EFNDRPDGFKAV 384
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
++ + +E + ++ N+ L +
Sbjct: 385 KKAYNLNISNVKTMEPKLR------YTAVEKGDINLIDAYSTDAELKQYNMVVLKD--DK 436
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F + + +L + P + + L + K + EM + KQD V +
Sbjct: 437 HVFPPYQGAPMFKEKFLKEHPEVKKPLNKLAGKITDEQMQEMNYKVTVKKQDPYKVAKDY 496
Query: 277 LRT 279
L+
Sbjct: 497 LKK 499
>gi|323485545|ref|ZP_08090891.1| hypothetical protein HMPREF9474_02642 [Clostridium symbiosum
WAL-14163]
gi|323401193|gb|EGA93545.1| hypothetical protein HMPREF9474_02642 [Clostridium symbiosum
WAL-14163]
Length = 297
Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats.
Identities = 31/282 (10%), Positives = 77/282 (27%), Gaps = 31/282 (10%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL--AVPVTFRSLKNKGID 77
A+ + + +T++ + ++E + F +L+ ID
Sbjct: 21 CKAEEKKAITIGASNFTEVNILGNIYRELIEADTDIEVKTSFGLNGASFCFAALEKGDID 80
Query: 78 IFMGYWYPSLEKFI----------------APYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+F+ Y +L + A E +I Y+++V
Sbjct: 81 MFVEYTGTALSNLLGQPMDSDPERVYETVSAQMRSEHNIHTSKPLGFNNTYVMSVKPETA 140
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
+ ++ + G +D + + + +
Sbjct: 141 EAY--GLETLSDLIGKSEELRLGC------TVEFVDRDDCLPLLESEYGVKFKEVSGLDA 192
Query: 182 QI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ + V ++ + L + LP VR + LDK P
Sbjct: 193 SVRYTAIDSGKVDVVDAFSTDALLYKLGLTVLPDDIGFF--PPYYACNFVRQETLDKYPE 250
Query: 241 ISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ ++L + + +M + + + V L +
Sbjct: 251 LEQVLSKLDGRIDEKTMADMNSKVDVEGKSAEEVAHQFLEEN 292
>gi|157151096|ref|YP_001450210.1| ABC transporter membrane-spanning permease [Streptococcus gordonii
str. Challis substr. CH1]
gi|157075890|gb|ABV10573.1| ABC transporter membrane-spanning permease [Streptococcus gordonii
str. Challis substr. CH1]
Length = 506
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 28/305 (9%), Positives = 88/305 (28%), Gaps = 39/305 (12%)
Query: 3 KILAVCLFLTTFSISYARDAD-----SCTPVRFADTGWTDIAATTAMTSVILEEILG--Y 55
+ + + + + + A + M +++EE
Sbjct: 207 RTVFTAFAVLILGLGASYTPSLLPKQEKDHLVIAGKLGPEPEILMNMYKLLIEENTDMTV 266
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------E 97
+++LK IDI+ + + P + +
Sbjct: 267 TVKPNFGKTDFLYQALKKGDIDIYPEFTGTITGTLLQPAPKASTDAEEVFEAARDGIKKQ 326
Query: 98 GSIKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
++ L+ Y +AV +K+ D+ + +L A ++
Sbjct: 327 DNLVLLNHMAYQNTYAIAVPKSVAKEYNLKTISDLKAVQDKLKAGFTL--EFSDREDGNK 384
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ + +L + + + ++ + ++ + ++ L
Sbjct: 385 GLQSVYGLNLNVSTMEP-------ALRYQAIQSGDIQITDAYSTDAELARYDLQVLED-- 435
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F +++ L K P + +L + K + + +++ + + + V +
Sbjct: 436 DKQLFPPYQGAPLMKEALLKKHPELETVLNKLAGKITESQMSQLNYQVGVEGKPAEQVAK 495
Query: 275 TMLRT 279
L+
Sbjct: 496 EFLQE 500
>gi|254505256|ref|ZP_05117407.1| putative ABC transporter, QAT family, substrate-binding protein
[Labrenzia alexandrii DFL-11]
gi|222441327|gb|EEE48006.1| putative ABC transporter, QAT family, substrate-binding protein
[Labrenzia alexandrii DFL-11]
Length = 305
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 45/300 (15%), Positives = 91/300 (30%), Gaps = 34/300 (11%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLK--NKGIDIF 79
A + V+ WT A + ++E +G K + F+++ ID+
Sbjct: 5 AFAAEEVKIGVPSWTGAQAIAHLLGAVVEMRIGGKAEMIPGNNATIFQAMDQGKGDIDVH 64
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG---------FALGIKSYQD 130
W P+ E F Y++E ++ N V+ LG
Sbjct: 65 PDVWLPNQESFTKKYVDEAGTVTLSSNPYEGNQGFCVSKDFGEANNITDIADLGRPDVAA 124
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
+ +++ PG + + I A E ++++
Sbjct: 125 MMDSDGNGKGEMWIGAPGWASANVNEVKVRDYGLMD-FIEPIRAEESVKTARVKDSIAKG 183
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGG-------------EEISGFGEASVYT--------- 228
F ++PH I ++ L ++ F +++V T
Sbjct: 184 EGYAFYCYKPHAIWYMFDVKMLTEPAYDPEKYVMVQPSDDADWFSKSNVATKDALKKVQI 243
Query: 229 VVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+ D+ P I+ N S + I ++ V + + +PD + WL
Sbjct: 244 AWSNSLADRSPAIAEFFANFSLSADDVSNFAYEISGKGREPAEVAKEWVEANPDRVDEWL 303
>gi|315648304|ref|ZP_07901405.1| hypothetical protein PVOR_23659 [Paenibacillus vortex V453]
gi|315276950|gb|EFU40293.1| hypothetical protein PVOR_23659 [Paenibacillus vortex V453]
Length = 305
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 49/306 (16%), Positives = 91/306 (29%), Gaps = 40/306 (13%)
Query: 1 MYKILAVCLFLTTFSISYAR---------DADSCTPVRFADTGWTDIAATTAMTSVILEE 51
+ KI+ V L + + A A+ + + +T+ M + ++E
Sbjct: 3 IKKIMVVLGMLASIGMVLAACGGNSDGDQAAEGNKQITVSSKNFTENVILAHMMAELIEA 62
Query: 52 ILGYKTNIK--LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPY--------------L 95
K L V + +LKN + +F Y + + L
Sbjct: 63 KTDIKVTRTVNLGGSNVVWNALKNNEVQLFPDYTGTIVANYYQEETGTSEESLSKTRELL 122
Query: 96 EEGSIKLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQR 154
+ ++ + Y LAV +K++ D+AK E+
Sbjct: 123 KADNLAFLEPFGMNNTYTLAVTKETADQYNLKTFSDLAKVSDEMTL---------GVEFE 173
Query: 155 ILDMINNNKFSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLP 213
LD + K + + I + V ++ N+ L
Sbjct: 174 FLDRDDGYPGIQKLYDMNFKDSKGMDHGIMYQAIEKGETDVTNAYATDAQIIVHNLVILE 233
Query: 214 GGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQF 271
+ F V+R D LD+ P I +L +K + A E+ +
Sbjct: 234 D--DKQFFPPYDGGPVIRQDTLDQYPEIEDVLNLLKGQITDAEMQELNAQVDMEGLKEDD 291
Query: 272 VGRTML 277
V R L
Sbjct: 292 VARDFL 297
>gi|52080988|ref|YP_079779.1| glycine betaine ABC transporter glycine betaine-binding protein
[Bacillus licheniformis ATCC 14580]
gi|52786364|ref|YP_092193.1| OpuAC [Bacillus licheniformis ATCC 14580]
gi|319645054|ref|ZP_07999287.1| OpuAC protein [Bacillus sp. BT1B_CT2]
gi|52004199|gb|AAU24141.1| glycine betaine ABC transporter (glycine betaine-binding protein)
[Bacillus licheniformis ATCC 14580]
gi|52348866|gb|AAU41500.1| OpuAC [Bacillus licheniformis ATCC 14580]
gi|317392863|gb|EFV73657.1| OpuAC protein [Bacillus sp. BT1B_CT2]
Length = 294
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 36/171 (21%), Positives = 70/171 (40%), Gaps = 4/171 (2%)
Query: 127 SYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRD 186
+ + A ++ KI GI+PG + + S + + S A + +++
Sbjct: 25 NNNENASVGDQVNYKITGIDPGAGIMNATDQALKDYDLSK--WTVTSGSSSAMTAALKKA 82
Query: 187 QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLK 246
P + W PH + + ++ YL + G E ++TV R + D P ++LL
Sbjct: 83 YDKKDPIIITGWTPHWMFAKYDLKYLKDPKGSYGDAE-EIHTVTRKGFKDDHPGANKLLS 141
Query: 247 NIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQ 297
++ E+M + + + ++ H DL+K W GV DG+
Sbjct: 142 QFSWTEDDMGEVMLAV-QEGKKPEEAAADFVKKHQDLVKKWTKGVDKADGE 191
Score = 67.9 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 20/104 (19%), Positives = 39/104 (37%), Gaps = 2/104 (1%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFM 80
D ++ W A+T + + +LE+ LGY + + + + N +D +
Sbjct: 186 DKADGEKIKLGYVAWDSEIASTNVIAKVLED-LGYNVTLSQVEAGPMWTGIANGSVDASL 244
Query: 81 GYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
W P K A +G + + ++ G K L V +
Sbjct: 245 AAWLPQTHKTYAEKY-KGKYEDIGTSMTGVKIGLVVPTYMKDVN 287
>gi|328880172|emb|CCA53411.1| Choline or glycine betaine ABC transporter,substrate binding
protein [Streptomyces venezuelae ATCC 10712]
Length = 324
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 40/289 (13%), Positives = 94/289 (32%), Gaps = 17/289 (5%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKG 75
S DA V + W A A+ +LE LGY+ + + + +L
Sbjct: 35 SSPYADAKGSRTVTLSVQSWVGAQANVAVAQYLLEHELGYRVDTVQIDEVPAWDALSQGR 94
Query: 76 IDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA--LGIKSYQDIAK 133
+D + W ++ ++ +IK E V + ++++ K
Sbjct: 95 VDAILEDWG-HPDQEKRYIDDKKTIKRGGELGVTGHIGWFVPTYFAEQHPDVTDWKNLNK 153
Query: 134 YKKELGAKIYGIEPG---NEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
Y G + + D L + SE A +QI++ +
Sbjct: 154 YADRFRTAESGGKGQLLDGSPSYVTNDKALVKNLDLDYQVVFAGSEAAQITQIKQFAKER 213
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEE-----------ISGFGEASVYTVVRSDYLDKCP 239
P + ++P + + + + + + + + + D
Sbjct: 214 KPFLSYWYKPQWLFEKVPMTEVKLPAYQDGCDADPAKVACAYPHTPLQKFLNARFADGGG 273
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+ + LK +++ ++N++ +I + K Q ++ + + WL
Sbjct: 274 DAAAFLKKFRWTTDMQNDVALMIADQKLSPQEAAGRWVKENESTWRTWL 322
>gi|325521538|gb|EGD00341.1| putative ABC transporter substrate-binding protein [Burkholderia
sp. TJI49]
Length = 303
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 38/296 (12%), Positives = 82/296 (27%), Gaps = 30/296 (10%)
Query: 9 LFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL-AVPVT 67
L A + + +T+ +T+ L GY +K +
Sbjct: 13 LVAAGALCVAASTSAFAAKLVLGAKNFTEQYVLAEVTAQYLRSR-GYDVEVKSGLGSTLA 71
Query: 68 FRSLKNKGIDIFMGYWYPS---------------LEKFIAPYLEEGSIKLVAENLQGAKY 112
+L+N D+ Y + + + + + + + Y
Sbjct: 72 RSALENGQFDLMWDYTGTAALVYNKIQDKLSPDEMYRRVKALDVPRGLVWLRASPLNDTY 131
Query: 113 MLAVNDVGFALG----IKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFSLK 167
L + I K ++G++ + ++
Sbjct: 132 ALGLPSKVVEATGIRTISQLAAHLKTDPAAKRYVFGMDAEFANRPDGLKPLLETYDMHFS 191
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
++ + + NN + L + I L + F +
Sbjct: 192 RAQMKQMDPG----LVYTALHNNQLTIGLVYTTDGRVKGFGIVPLED--DKHYFPPYNAT 245
Query: 228 TVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRTHP 281
VVR D L++ P ++ L + + M K + + + + V LRTHP
Sbjct: 246 PVVRKDTLERNPKLAAQLDALSAVLDNDVMQAMNKAVDLDGKSPREVADAFLRTHP 301
>gi|314933035|ref|ZP_07840401.1| osmoprotectant ABC transporter, permease protein [Staphylococcus
caprae C87]
gi|313654354|gb|EFS18110.1| osmoprotectant ABC transporter, permease protein [Staphylococcus
caprae C87]
Length = 504
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 40/303 (13%), Positives = 91/303 (30%), Gaps = 35/303 (11%)
Query: 2 YKILA---VCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
K+L + + +I A + A ++ + T M +++E+ +
Sbjct: 207 KKLLITLGAIVLVILLAILIPLFAQKGDKITLAGKLGSEPSVITNMYKILIEDETDDTVD 266
Query: 59 IK--LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP-----------------YLEEGS 99
+K + F +LK+ ID ++ + L + ++
Sbjct: 267 VKDGMGKTSFLFNALKSDDIDGYLEFTGTVLGELTKEDLKSKKEPAVYQQAKTSLEKKDH 326
Query: 100 IKLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ ++ Y LAV IK+ D+ K + +L N+ +
Sbjct: 327 MTMLKPMKYNNTYALAVKRDFAKKNNIKTIGDLQKVEDKLKPGFTL--EFNDRPDGFKAV 384
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
++ + +E + ++ N+ L +
Sbjct: 385 KKAYNLNISNVKTMEPKLR------YTAVEKGDINLIDAYSTDAELKQYNMVVLKD--DK 436
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F + + +L P + + L + K + EM + KQD V +
Sbjct: 437 HVFPPYQGAPMFKGKFLKDHPEVKKPLNKLAGKITDEQMQEMNYKVTVKKQDPYKVAKDY 496
Query: 277 LRT 279
L+
Sbjct: 497 LKK 499
>gi|153955414|ref|YP_001396179.1| ABC transporter permease [Clostridium kluyveri DSM 555]
gi|219855830|ref|YP_002472952.1| hypothetical protein CKR_2487 [Clostridium kluyveri NBRC 12016]
gi|146348272|gb|EDK34808.1| Predicted ABC transporter, permease component [Clostridium kluyveri
DSM 555]
gi|219569554|dbj|BAH07538.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 529
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 37/301 (12%), Positives = 85/301 (28%), Gaps = 34/301 (11%)
Query: 2 YK--ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-- 57
K + V L + + + + + M S ++E YK
Sbjct: 235 KKPILTVVALLILGIIAFMTYSGLTKKTIVVGSKNFNEQIVLGNMVSSLIEYNTDYKVDR 294
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP----------------YLEEGSIK 101
+ L V F ++K+ ID+++ Y L + + + ++
Sbjct: 295 KLNLGGSSVVFSAMKSGNIDLYVEYTGTGLVNIMKRESISDADRVYDIVEDYFKKNYGMQ 354
Query: 102 LVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINN 161
+ Y+LA+ + + +
Sbjct: 355 WLKPLGFNNTYVLAMKKELSNQYNINTISDLTKISNSINL--------GCTMEFANRDDG 406
Query: 162 NKFSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISG 220
K + L + + N+ + ++ + ++ L +
Sbjct: 407 YPGLQKLYGLNFKTVKGLDGGLRYSSLENDETQITDAFSTDGLLKKFDLKLLKDDKNFF- 465
Query: 221 FGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
+VR D L+K P I +L ++ K + EM +N +D + + L+
Sbjct: 466 -PPYYAVPLVREDVLEKYPEIKPILLSLEGKITDEDMREMNYR-ADNGEDPKVIAEDFLK 523
Query: 279 T 279
Sbjct: 524 E 524
>gi|94994401|ref|YP_602499.1| glycine betaine transport system permease protein / glycine
betaine-binding protein [Streptococcus pyogenes
MGAS10750]
gi|94547909|gb|ABF37955.1| Glycine betaine transport system permease protein / Glycine
betaine-binding protein [Streptococcus pyogenes
MGAS10750]
Length = 520
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 33/297 (11%), Positives = 85/297 (28%), Gaps = 34/297 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--L 61
I + L + ++ ++ + V A + + ++E+ +K
Sbjct: 227 ITLLALLASYTPMALSQFSKGKDTVVIAGKLGAEPDILINLYKELIEDQSDISVELKSNF 286
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------EGSIKLV 103
+ +LK+ IDI+ + + + + L+
Sbjct: 287 GKTSFLYEALKSGDIDIYPEFTGTITSSLLRDKPPLSNDPKQVYEDAKKGIAKQDKLTLL 346
Query: 104 AENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
Y +A+ + I++ D+ + L D +
Sbjct: 347 KPFAYQNTYAVAMPEKLAKEYQIETISDLKAHADTLK---------AGFTLEFKDRADGY 397
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
K + L + + + ++ V ++ + ++ L + F
Sbjct: 398 KGMQSQYGLQLSVATMEPALRYQAIQSGDIQVTDAYSTDAEITKYHLKVLKD--DKQLFP 455
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
++++ L K P + +L + K + +M + D V R L
Sbjct: 456 PYQGAPLMKTSLLTKHPELKGILNQLAGKITEKEMQDMNYEVSVKGADANKVARDYL 512
>gi|288556230|ref|YP_003428165.1| proline/glycine betaine ABC transporter permease [Bacillus
pseudofirmus OF4]
gi|288547390|gb|ADC51273.1| proline/glycine betaine ABC transporter permease [Bacillus
pseudofirmus OF4]
Length = 513
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 28/289 (9%), Positives = 87/289 (30%), Gaps = 17/289 (5%)
Query: 6 AVCLFLTTFSISYARDADSCTPV-RFADTGWTDIAATTAMTSVILEEILGYKTNIK--LL 62
L + I ++ + + M +++E+ +++ L
Sbjct: 222 LALLIVVIPPIVSSQGGGDAGTILTVGGKEGAEPIIIGNMYKLLIEDQTDMTVDVQGNLG 281
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
+ +L+ ID+++ + + + + E + Y
Sbjct: 282 GTDFVYNALRVGDIDMYLEFSGTVVGDLLNIEDFSYDEREAYEQARDGIYEAEQLVFLEP 341
Query: 123 LGIKSYQDIAKYKKELGAKIYG---------IEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+ + IA + E +D + + + +
Sbjct: 342 MDYHNTYAIAVTNEFAEESGVETISDLAPYQDELSAGFTFEFVDRHDGYPGLQEKYGISF 401
Query: 174 ASELASFSQIR-RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRS 232
+S + + +R R + V ++ + ++ L E++ ++R
Sbjct: 402 SSVQSMEAALRSRALVSGDVDVIDAYSTDAYLVEYDLVVLEDDEQLF--PPYQGAPLLRE 459
Query: 233 DYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+ L++ P + +L + + +M + + ++ + V R L+
Sbjct: 460 ETLEEHPELKEILNQLAGMITEEEIQQMNYRVDYDDENPEDVAREFLQE 508
>gi|139473775|ref|YP_001128491.1| glycine/betaine ABC transporter [Streptococcus pyogenes str.
Manfredo]
gi|134272022|emb|CAM30261.1| ABC-type glycine betaine transport system protein [Streptococcus
pyogenes str. Manfredo]
Length = 508
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 33/297 (11%), Positives = 85/297 (28%), Gaps = 34/297 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--L 61
I + L + ++ ++ + V A + + ++E+ +K
Sbjct: 215 ITLLALLASYTPMALSQFSKGKDTVVIAGKLGAEPDILINLYKELIEDQSDISVELKSNF 274
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------EGSIKLV 103
+ +LK+ IDI+ + + + + L+
Sbjct: 275 GKTSFLYEALKSGDIDIYPEFTGTITSSLLRDKPPLSNDPKQVYEDAKKGIAKQDKLTLL 334
Query: 104 AENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
Y +A+ + I++ D+ + L D +
Sbjct: 335 KPFAYQNTYAVAMPEKLAKEYQIETISDLKAHADTLK---------AGFTLEFKDRADGY 385
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
K + L + + + ++ V ++ + ++ L + F
Sbjct: 386 KGMQSQYGLQLSVATMEPALRYQAIQSGDIQVTDAYSTDAEITKYHLKVLKD--DKQLFP 443
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
++++ L K P + +L + K + +M + D V R L
Sbjct: 444 PYQGAPLMKASLLTKHPELKGILNQLAGKITEKEMQDMNYKVSVKGADANKVARDYL 500
>gi|220930693|ref|YP_002507602.1| substrate-binding region of ABC-type glycine betaine transporter
[Clostridium cellulolyticum H10]
gi|220001021|gb|ACL77622.1| Substrate-binding region of ABC-type glycine betaine transport
system [Clostridium cellulolyticum H10]
Length = 524
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 43/295 (14%), Positives = 85/295 (28%), Gaps = 34/295 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--L 61
+L L + T + + +R A +T+ M S ++EE K L
Sbjct: 235 LLTAALIIPTIIPGFGSSTN---VIRIAGKDFTEQHILVYMFSDLIEENTDLNVERKVNL 291
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFI----------------APYLEEGSIKLVAE 105
V F +LK+ ID++ Y + + + E+ +I+++ +
Sbjct: 292 GGTQVCFSALKSGDIDLYFDYSGTAYGDTLKYPPISDMDKVYNTVKKDFKEKFNIEVLKQ 351
Query: 106 NLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFS 165
Y+LAV ++ +
Sbjct: 352 MGFNNTYVLAVTKETAQKYNLKTI--------SDMAKVASNLTAGATLEFVNREDGLLGI 403
Query: 166 LKGFRLIEASELASFSQ-IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEA 224
K + N +V ++ + ++ L +
Sbjct: 404 TKKYNFKFKDTKGLDGSPRYTALINKETSVVDAFSTDGLLKKFDLVPLEDDKNFF--PPY 461
Query: 225 SVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+VR D L K P I L++ + S + E+ + + D V R L
Sbjct: 462 YAIPLVREDILKKYPEIEPLIEQLGGILSNEVMIELNYKVDELQMDPSVVAREFL 516
>gi|270292233|ref|ZP_06198447.1| choline transporter [Streptococcus sp. M143]
gi|270279279|gb|EFA25122.1| choline transporter [Streptococcus sp. M143]
Length = 508
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 39/303 (12%), Positives = 92/303 (30%), Gaps = 35/303 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDAD-SCTPVRFADTGWTDIAATTAMTSVILEEI--LGYKT 57
++ A+ L S S A A + A + M +++EE +
Sbjct: 211 IFSGFALVTLLLGLSYSPALLAQKEKENLVIAGKLGPEPEILANMYKLLIEENTSMTATV 270
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------EGS 99
+ +LK IDI+ + E + P + +
Sbjct: 271 KPNFGKTSFLYEALKKGDIDIYPEFTGTVTESLLQPSPKVSHEPEQVYQVARDGIAKQDQ 330
Query: 100 IKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ + Y +AV G+K+ D+ K + +L D
Sbjct: 331 LAYLKPMSYQNTYAVAVPKKIAQEYGLKTISDLKKVEGQLK---------AGFTLEFNDR 381
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ NK + L + + ++ + ++ + ++ L +
Sbjct: 382 EDGNKGLQSLYGLNLNVATMEPALRYQAIQSGDIQITDAYSTDAELARYDLQVLED--DK 439
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F ++++ L K P + +L + K S + +++ + + + V +
Sbjct: 440 QLFPPYQGAPLMKAALLKKHPELETVLNKLAGKISESQMSQLNYQVGVEGKPAEQVAKEF 499
Query: 277 LRT 279
L+
Sbjct: 500 LQE 502
>gi|71910669|ref|YP_282219.1| glycine betaine transporter permease [Streptococcus pyogenes
MGAS5005]
gi|71853451|gb|AAZ51474.1| glycine betaine transport system permease protein [Streptococcus
pyogenes MGAS5005]
Length = 508
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 32/297 (10%), Positives = 85/297 (28%), Gaps = 34/297 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--L 61
I + L + ++ ++ + V A + + ++E+ +K
Sbjct: 215 ITLLALLASYTPMALSQFSKGKDTVVIAGKLGAEPDILINLYKELIEDQSDISVELKSNF 274
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------EGSIKLV 103
+ +LK+ ID++ + + + + L+
Sbjct: 275 GKTSFLYEALKSGDIDMYPEFTGTITSSLLRDKPPLSNDPKQVYEDAKKGIAKQDKLTLL 334
Query: 104 AENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
Y +A+ + I++ D+ + L D +
Sbjct: 335 KPFAYQNTYAVAMPEKLAKEYQIETISDLKAHADTLK---------AGFTLEFKDRADGY 385
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
K + L + + + ++ V ++ + ++ L + F
Sbjct: 386 KGMQSQYGLQLSVATMEPALRYQAIQSGDIQVTDAYSTDAEITKYHLKVLKD--DKQLFP 443
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
++++ L K P + +L + K + +M + D V R L
Sbjct: 444 PYQGAPLMKTSLLTKHPELKGILNQLAGKITEKEMQDMNYEVSVKGADANKVARDYL 500
>gi|257884832|ref|ZP_05664485.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecium 1,231,501]
gi|257820670|gb|EEV47818.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecium 1,231,501]
Length = 512
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 39/301 (12%), Positives = 91/301 (30%), Gaps = 21/301 (6%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
LA + L Y + A + M ++E+ + +K
Sbjct: 212 TLAAVVCLFGGVSLYQSALFKNETITIAGKLGAEPEILIQMYKELIEDNTKTEVELKPNF 271
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIA-PYLEEGSIKLVAENLQGAKYML------ 114
F +L IDI+ + LE + P + + + A+ +L
Sbjct: 272 GKTSFLFNALDQGQIDIYPEFTGTVLESLVKVPEAMKSADLTKEKTYDEAEELLNKQFDM 331
Query: 115 ------AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
A + +S+ + + KK + +D + K +
Sbjct: 332 TLLKPMAYQNTYALAVKRSFANEHQLKKISDLAAISDQIKAGFTLEFIDRSDGYKGIQEA 391
Query: 169 FRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
+ L +S + + + + ++ + ++ L +
Sbjct: 392 YGLNFSSVQSMEPSLRYQAINTGDVNIVDAYSTDSQLKEYDLVTLEDDRGLF--PAYQGA 449
Query: 228 TVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLK 285
+++ D+ + P I + L + K + +M + K+ V R L+ + L+K
Sbjct: 450 PLMKKDFAKEHPEIVKALNKLSGKITEDQMIDMNYQVNVEKKKPTEVARIFLK-NEGLVK 508
Query: 286 N 286
Sbjct: 509 E 509
>gi|221195060|ref|ZP_03568116.1| glycine betaine transport system permease protein [Atopobium rimae
ATCC 49626]
gi|221184963|gb|EEE17354.1| glycine betaine transport system permease protein [Atopobium rimae
ATCC 49626]
Length = 513
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 34/276 (12%), Positives = 73/276 (26%), Gaps = 31/276 (11%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL---LAVPVTFRSLKNKGIDIF 79
+ A T+ ++E K N+ ++ DI+
Sbjct: 242 GQKETINIATKPMTEQYILGEALKELIEHKTNLKVNLTQGVGGGTSNIQPGMEKGSFDIY 301
Query: 80 MGYWYPSLEKFIA---------------PYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
Y + Y ++ ++ + + LAV
Sbjct: 302 PEYTGTGWNLVLKNADFYSNDKFSQLQSEYQQKYNMDWLGMYGFENTFGLAVRKDIAQKY 361
Query: 125 -IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
+++Y D+A+ +L G E + + + +
Sbjct: 362 NLQTYSDLARVSDQL--TFGGEYDFFEREDGYTALCTAYGMTF------KKTVDLDIGLK 413
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
+ + + N+ L + F VVRS+ L K P +
Sbjct: 414 YEAMSQGKIDAMIVFTTDGKLNTANVVVLKD--DRHFFASYQAGNVVRSEVLQKHPELKD 471
Query: 244 LLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
LL ++ + M + N ++ + V L
Sbjct: 472 LLDSLTNTITNEDMARMNYEVETNGREPKDVAHEYL 507
>gi|332523537|ref|ZP_08399789.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Streptococcus porcinus str.
Jelinkova 176]
gi|332314801|gb|EGJ27786.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Streptococcus porcinus str.
Jelinkova 176]
Length = 508
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 36/297 (12%), Positives = 83/297 (27%), Gaps = 22/297 (7%)
Query: 1 MYKILAVCLFLTTFSISY------ARDADSCTPVRFADTGWTDIAATTAMTSVILEE--I 52
+ KIL + + ++ + A + + I+E+
Sbjct: 206 LKKILLAFAVIVLGLLVSYSPKLVSQFTKKSETLVIAGKLGAEPEVLINIYKEIIEDQSE 265
Query: 53 LGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPY----LEEGSIKLVAENLQ 108
L + +++LK+ IDI+ + + + + L A+N
Sbjct: 266 LKVEVKSNFGKTSFLYQALKSGDIDIYPEFTGTITSSLLTSKTELSNDPKKVYLDAKNGI 325
Query: 109 GAKYMLAVNDVGFALGIKSYQDIAKYKKE------LGAKIYGIEPGNEGNQRILDMINNN 162
+ L + + K KE K Y + D +
Sbjct: 326 AKQDNLVLLKPFAYQNTYAVAVPEKLAKEKGLTKISDLKAYEGQLKAGFTLEFKDRADGY 385
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
K + L + + + N + ++ ++ L + F
Sbjct: 386 KGLQSKYGLSLPVSTMEPALRYQAIKANDIQITDAYSTDAELKKYHLKVLED--DKHLFP 443
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+++ + K P + ++L + K S EM + ++ V L
Sbjct: 444 PYQGAPLMKKALIQKHPELKKILNQLAGKISEDQMQEMNYQVSVKGKEASRVAHDFL 500
>gi|116249412|ref|YP_765253.1| putative ABC transporter component [Rhizobium leguminosarum bv.
viciae 3841]
gi|115254062|emb|CAK12459.1| putative ABC transporter component [Rhizobium leguminosarum bv.
viciae 3841]
Length = 310
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 41/293 (13%), Positives = 86/293 (29%), Gaps = 31/293 (10%)
Query: 9 LFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPV 66
+F + + S ++ +T+ M + +LE G I L +
Sbjct: 23 IFAAGIMAAAMFQSASAETIKVGSKNFTEQFILAEMYAAVLENA-GITVERKINLGGTLI 81
Query: 67 TFRSLKNKGIDIFMGYWYPSLEKFIA----------------PYLEEGSIKLVAENLQGA 110
++L ID++ Y +L + Y ++ ++ + +
Sbjct: 82 AHQALVAGEIDLYPEYTGTALASVVKGEMSTDAEKVYTQVKDFYAKQFNLTWLKPSGINN 141
Query: 111 KYMLAVNDVGFAL-GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
Y++ V +KS D+AK K G + + + K F
Sbjct: 142 GYVIVVRQETAQANNLKSLSDLAKVSK--TLVFGGGAEFPDRADGLPGLKRVYDAEFKEF 199
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV 229
+ A V N+ L + + V V
Sbjct: 200 KQF-----AKLGLRYDALEQKDIDVANGAATDWQIGSKNLVPLADDKGLF--PPYYVAPV 252
Query: 230 VRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
VR D L P ++ LL+ + + + + ++ + V L+ +
Sbjct: 253 VRQDVLKANPKVAELLEAVGTHLDNEKMRVLNAKVETDHEEAKDVAVEFLKEN 305
>gi|317049235|ref|YP_004116883.1| glycine betaine ABC transporter substrate-binding protein [Pantoea
sp. At-9b]
gi|316950852|gb|ADU70327.1| Substrate-binding region of ABC-type glycine betaine transport
system [Pantoea sp. At-9b]
Length = 331
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 45/341 (13%), Positives = 95/341 (27%), Gaps = 47/341 (13%)
Query: 1 MYKILAVCLFLTTFSI---SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M K LTTF++ S A V+ + ++ T + S LE LGY
Sbjct: 1 MRKTALFAAVLTTFAVTHVSAADLPGKGITVKPVQSTISEETFQTLLVSRALE-KLGYTV 59
Query: 58 -NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ V + ++ W P + + + GA +
Sbjct: 60 DKPSEVDYNVGYTTIAEGDATFTAVNWQPLHDDMYKAAGGDQKFYREGTYVTGAAQGYLI 119
Query: 117 NDVGFALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
+ + + + A + G PG I I+ S
Sbjct: 120 DKKTAEQYHITNVAQLKDPKLAKLFDTNGDGKADLTGCTPGWGCEAVINHQIDAYGLSKT 179
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEE------ 217
+ + A + + P ++ +W P+ ++ ++ +L
Sbjct: 180 -VEHNQGNYSAMIADTITRFKQGKPILYYTWTPYWVSDVLKPGKDVVWLQVPFSSLPGEQ 238
Query: 218 -----------ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNK 266
GF +++ V + +K P ++L +K + N + +
Sbjct: 239 KNVDTKLANGANYGFPVNTMHIVANKAWAEKNPAAAKLFAEMKLPITDINAENAAMHAGQ 298
Query: 267 QDRQFV---GRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLE 304
+ ++ H W+ QD +
Sbjct: 299 SSEDDINRHVDGWIKGHQAEFDKWV--------QDALAAAK 331
>gi|332882586|ref|ZP_08450198.1| ABC transporter, substrate-binding protein, QAT family
[Capnocytophaga sp. oral taxon 329 str. F0087]
gi|332679386|gb|EGJ52371.1| ABC transporter, substrate-binding protein, QAT family
[Capnocytophaga sp. oral taxon 329 str. F0087]
Length = 530
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 33/296 (11%), Positives = 79/296 (26%), Gaps = 31/296 (10%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL- 61
K++ + + ++ + + A T+ M S+++E+ G +
Sbjct: 235 KLVGIGILALLITLFFVLSPKKTKDIHIATKPMTESYLLGQMLSLLIEQDTGLSVRLTNG 294
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP---------------YLEEGSIKLVA 104
++ D++ Y + E + Y ++ ++
Sbjct: 295 VGGGTSNIHPAIARGDFDMYPEYTGTAWEAVLKRKDPYNENKFADLETAYKKQYGLEWAN 354
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNK 163
Y LAV+ + K I+G E E +
Sbjct: 355 LYGFNNTYSLAVSKEMAQKY--QLKTFTDLAKVSERLIFGAEYDFFEREDGYKALQEVYG 412
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+ + R+ + + S + L +
Sbjct: 413 MHFRKV------LDMDIGLKYQAMRDKKIDAMVVFTTDGQLSVSEVVVLQDDRN--MYPS 464
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
TVVR++ L P + L + + + L+ ++ + V + L
Sbjct: 465 YKAGTVVRTELLTTYPTLRTTLTKLNQLIDDSTMAHLNFLVETERKRPEEVAKNYL 520
>gi|15675111|ref|NP_269285.1| putative ABC transporter binding protein [Streptococcus pyogenes M1
GAS]
gi|13622269|gb|AAK34006.1| putative ABC transporter (binding protein) [Streptococcus pyogenes
M1 GAS]
Length = 510
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 32/297 (10%), Positives = 85/297 (28%), Gaps = 34/297 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--L 61
I + L + ++ ++ + V A + + ++E+ +K
Sbjct: 217 ITLLALLASYTPMALSQFSKGKDTVVIAGKLGAEPDILINLYKELIEDQSDISVELKSNF 276
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------EGSIKLV 103
+ +LK+ ID++ + + + + L+
Sbjct: 277 GKTSFLYEALKSGDIDMYPEFTGTITSSLLRDKPPLSNDPKQVYEDAKKGIAKQDKLTLL 336
Query: 104 AENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
Y +A+ + I++ D+ + L D +
Sbjct: 337 KPFAYQNTYAVAMPEKLAKEYQIETISDLKAHADTLK---------AGFTLEFKDRADGY 387
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
K + L + + + ++ V ++ + ++ L + F
Sbjct: 388 KGMQSQYGLQLSVATMEPALRYQAIQSGDIQVTDAYSTDAEITKYHLKVLKD--DKQLFP 445
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
++++ L K P + +L + K + +M + D V R L
Sbjct: 446 PYQGAPLMKTSLLTKHPELKGILNQLAGKITEKEMQDMNYEVSVKGADANKVARDYL 502
>gi|229588359|ref|YP_002870478.1| putative amino acid ABC transporter substrate-binding protein
[Pseudomonas fluorescens SBW25]
gi|229360225|emb|CAY47082.1| putative amino acid ABC transport system, substrate-binding protein
[Pseudomonas fluorescens SBW25]
Length = 297
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 42/304 (13%), Positives = 90/304 (29%), Gaps = 32/304 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M ++ + + F + A +R +T+ +TS L GY+T +
Sbjct: 1 MKRLTLILSCVLLF--AGIAQAAEKPLIRIGARVFTEQTLLAEITSQYLRTK-GYQTQVT 57
Query: 61 LL-AVPVTFRSLKNKGIDIFMGYWYPSLEKF---------------IAPYLEEGSIKLVA 104
+ + ++ +D+ Y SL + + + + ++
Sbjct: 58 GGLGSNLARSAQESGQLDLLWEYTGVSLVAYNHVDEKLDSEQSYARVKELDAKKGLVWLS 117
Query: 105 ENLQGAKYMLAVNDVGFA-----LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI 159
+ Y LA+ + I K + + + + M+
Sbjct: 118 PSRFSNTYALALPENVAKEFPQINSISDLTQALAEKTKGTRLVALDTEFANRSDGMGGMV 177
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
+L + + RN L + + + L +
Sbjct: 178 KLYDMNLTRKN----TRQMDAGLVYTALRNGQVFAGLVYTTDGRLNAFKLKLLED--DKH 231
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
F + + V+R YLD+ P ++ LK + F E+ + + V L
Sbjct: 232 YFPDYTAAPVIRQQYLDQHPQLAAELKPLADLFDDKTMRELNARVDVEHESPSAVAADFL 291
Query: 278 RTHP 281
R HP
Sbjct: 292 RQHP 295
>gi|95928646|ref|ZP_01311393.1| Substrate-binding region of ABC-type glycine betaine transport
system [Desulfuromonas acetoxidans DSM 684]
gi|95135436|gb|EAT17088.1| Substrate-binding region of ABC-type glycine betaine transport
system [Desulfuromonas acetoxidans DSM 684]
Length = 340
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 52/319 (16%), Positives = 96/319 (30%), Gaps = 45/319 (14%)
Query: 14 FSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI-KLLAVPVTFRSLK 72
+ A+ V+ A W A+ S L+E LGYK K L P+ ++++
Sbjct: 17 VVAADAQLPGKGVTVKPARATWNTGYFQEALVSEGLKE-LGYKVKRPKELQNPIFYQAVA 75
Query: 73 NKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIA 132
+D + W+P+ + + P + + KL G V+ D
Sbjct: 76 FGDVDYWTNGWFPNHDGQLPPDFYKVATKLGYVAKAGGLQGYLVSKEFADKYNIKSLDDF 135
Query: 133 KYKK---------ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
K + + A + PG I + I+AS AS +
Sbjct: 136 KRPEVMKAFDANGDGKADLTACPPGWGCETVINHHFDVYDLD-PYINQIKASYSASMADA 194
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE-------------------------- 217
P F +W P+ L
Sbjct: 195 IARHDAGQPVFFYTWAPNWTIFKLKPGEDVVWINVPKIMPKESQKSGEDRMTMSGIKGAV 254
Query: 218 ----ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV- 272
GF + + V +L++ P ++ L+ +A NE + N ++ R+ +
Sbjct: 255 SDPVKLGFVVSDIQVVANKKFLEENPAAAKFLEVFTLPLADINEQNTRMQNGEKSRKDIE 314
Query: 273 --GRTMLRTHPDLLKNWLI 289
+ + + WL
Sbjct: 315 RHVKEWIEKNQVTWDGWLE 333
>gi|315613712|ref|ZP_07888619.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Streptococcus sanguinis ATCC 49296]
gi|315314403|gb|EFU62448.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Streptococcus sanguinis ATCC 49296]
Length = 506
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 38/303 (12%), Positives = 91/303 (30%), Gaps = 35/303 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTP-VRFADTGWTDIAATTAMTSVILEEI--LGYKT 57
++ A+ L S S A A + A + M +++EE +
Sbjct: 209 IFSGFALVTILLGLSYSPALLAQKEQENLVIAGKLGPEPEILANMYKLLIEENTSMTATV 268
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------EGS 99
+ +LK IDI+ + E + P + +
Sbjct: 269 KPNFGKTSFLYEALKKGDIDIYPEFTGTVTESLLQPSPKVGHEPDQVYQVARDGIAKQDH 328
Query: 100 IKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ + Y +AV G+K+ D+ K + +L D
Sbjct: 329 LAYLKPMSYQNTYAVAVPKKIAQEYGLKTISDLKKVEGQLK---------AGFTLEFNDR 379
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ NK + L + + ++ + ++ + ++ L +
Sbjct: 380 EDGNKGLQSMYGLNLNVATMEPALRYQAIQSGDIQITDAYSTDAELARYDLQVLED--DK 437
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F +++ L K P + +L + K + + +++ + + + V +
Sbjct: 438 QLFPPYQGAPLMKEALLKKHPELETVLNKLAGKITESQMSQLNYQVGVEGKSAEQVAKEF 497
Query: 277 LRT 279
L+
Sbjct: 498 LQE 500
>gi|253583267|ref|ZP_04860465.1| glycine betaine/carnitine/choline ABC transporter opuCB
[Fusobacterium varium ATCC 27725]
gi|251833839|gb|EES62402.1| glycine betaine/carnitine/choline ABC transporter opuCB
[Fusobacterium varium ATCC 27725]
Length = 523
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 40/307 (13%), Positives = 92/307 (29%), Gaps = 37/307 (12%)
Query: 2 YKILAVCLFLTTFSISYARD------ADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
+ILA + S + +T+ + ++++EE
Sbjct: 224 KRILAATMLAGIIFTVIFCGRVTMYKPRSEKVIVMGSKEFTEGEILANIMAIMIEEKTDI 283
Query: 56 KTNIKL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFI----------------APYLEE 97
+ + V F +LK+ ID+++ Y + E+
Sbjct: 284 SIDRRFALGGTQVCFNALKSNEIDMYVDYTGTVYGDTLKYPPIQDMEKVYDTVKKDMKEK 343
Query: 98 GSIKLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
SI ++ + Y LAV +K+ D+ K K L + +
Sbjct: 344 YSIDVLQQLGFNNTYALAVRKDTAEKYNLKTISDLEKIAKNL--TLSASLEFLNREDCYI 401
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ K + I+ S N V + + L++ L
Sbjct: 402 GLSKKYKLDFRKVIGIDGSSK------YLALTNKESDVIDVYTTDALLQKLDLVVLED-- 453
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGR 274
+ F +VR + ++K P I +++ ++ + + + + + N +
Sbjct: 454 DRHFFPPYYAVPLVRDEIIEKYPEIVPIIEKLQSVLNDKVISSLNHKVENLGKKPNEAAL 513
Query: 275 TMLRTHP 281
+ +
Sbjct: 514 EFIEEYE 520
>gi|71903495|ref|YP_280298.1| glycine betaine transport system permease protein [Streptococcus
pyogenes MGAS6180]
gi|71802590|gb|AAX71943.1| glycine betaine transport system permease protein [Streptococcus
pyogenes MGAS6180]
Length = 520
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 33/297 (11%), Positives = 85/297 (28%), Gaps = 34/297 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--L 61
I + L + ++ ++ + V A + + ++E+ +K
Sbjct: 227 ITLLALLASYTPMALSQFSKGKDTVVIAGKLGAEPDILINLYKELIEDQSDISVELKSNF 286
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------EGSIKLV 103
+ +LK+ IDI+ + + + + L+
Sbjct: 287 GKTSFLYEALKSGDIDIYPEFTGTITSSLLRDKPPLSNDPKQVYEDAKKGIAKQDKLTLL 346
Query: 104 AENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
Y +A+ + I++ D+ + L D +
Sbjct: 347 KPFAYQNTYAVAMPEKLAKEYQIETISDLKAHADTLK---------AGFTLEFKDRADGY 397
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
K + L + + + ++ V ++ + ++ L + F
Sbjct: 398 KGMQSQYGLQLSVATMEPALRYQAIQSGDIQVTDAYSTDAEITKYHLKVLKD--DKQLFP 455
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
++++ L K P + +L + K + +M + D V R L
Sbjct: 456 PYQGAPLMKTSLLTKHPELKGILNQLAGKITEKEMQDMNYEVSVKGADANKVARDYL 512
>gi|313894364|ref|ZP_07827929.1| ABC transporter, substrate-binding protein, QAT family [Veillonella
sp. oral taxon 158 str. F0412]
gi|313441188|gb|EFR59615.1| ABC transporter, substrate-binding protein, QAT family [Veillonella
sp. oral taxon 158 str. F0412]
Length = 510
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 32/305 (10%), Positives = 71/305 (23%), Gaps = 35/305 (11%)
Query: 1 MYK-ILAVCLFLTTFSISYARDADSCTPVR-----FADTGWTDIAATTAMTSVILEEILG 54
M + + +T ++ A C V+ A T+ + ++E+
Sbjct: 211 MKRYTIIFVSIMTIIAMGIGGWAMYCRHVKTDVIHIATKPMTEQLILGNILKELIEKKTD 270
Query: 55 YKTNIKL---LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP---------------YLE 96
+ ++ + DI+ Y + + Y E
Sbjct: 271 LTVEVTEGVGGGTSNIQPAMLSGQFDIYPEYTGTAWSAVLKRTDAYDESLFNELSQAYKE 330
Query: 97 EGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
+ + + V Y + V + G
Sbjct: 331 KYNFEWVGMYGFNNTYGIGVRNEIVQSYALKTYSDLARIAPSLTLG-GEYDFFGREDGYA 389
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ ++++ + S I L
Sbjct: 390 GLQRVYGMRF------KSTKDMDIGLKYTAISRGEVDAMPIFTTDGQLSIAPITVLQD-- 441
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ + VVRSD L P + +L+++ + +M + Q V
Sbjct: 442 DKHLYPSYMSGNVVRSDVLIAHPELRPVLESLNHTITDQEMAKMNYAVETEHQLPADVAH 501
Query: 275 TMLRT 279
L
Sbjct: 502 KFLVE 506
>gi|50914198|ref|YP_060170.1| glycine betaine transport system permease protein [Streptococcus
pyogenes MGAS10394]
gi|50903272|gb|AAT86987.1| Glycine betaine transport system permease protein [Streptococcus
pyogenes MGAS10394]
Length = 520
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 33/297 (11%), Positives = 85/297 (28%), Gaps = 34/297 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--L 61
I + L + ++ ++ + V A + + ++E+ +K
Sbjct: 227 ITLLALLASYTPMALSQFSKGKDTVVIAGKLGAEPDILINLYKELIEDQSDISVELKSNF 286
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------EGSIKLV 103
+ +LK+ IDI+ + + + + L+
Sbjct: 287 GKTSFLYEALKSGDIDIYPEFTGTITSSLLRDKPPLSNDPKQVYEDAKKGIAKQDKLTLL 346
Query: 104 AENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
Y +A+ + I++ D+ + L D +
Sbjct: 347 KPFAYQNTYAVAMPEKLAKEYQIETISDLKAHADTLK---------AGFTLEFKDRADGY 397
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
K + L + + + ++ V ++ + ++ L + F
Sbjct: 398 KGMQSQYGLQLSVATMEPALRYQAIQSGDIQVTDAYSTDAEITKYHLKVLKD--DKQLFP 455
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
++++ L K P + +L + K + +M + D V R L
Sbjct: 456 PYQGAPLMKTSLLTKHPELKGILNQLAGKITEKEMQDMNYEVSVKGADANKVARDYL 512
>gi|188583198|ref|YP_001926643.1| Substrate-binding region of ABC-type glycine betaine transport
system [Methylobacterium populi BJ001]
gi|179346696|gb|ACB82108.1| Substrate-binding region of ABC-type glycine betaine transport
system [Methylobacterium populi BJ001]
Length = 215
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 43/223 (19%), Positives = 86/223 (38%), Gaps = 8/223 (3%)
Query: 67 TFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIK 126
++++ D + W P + L + I L+ N+ GA+ AV + +
Sbjct: 1 MWQAVATGDADASVAAWLPVTQGAYYEKL-KNRIDLIGPNVTGARIGWAVP---ASSPLT 56
Query: 127 SYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRD 186
S +D+A E+ K+ GI+PG + I +L++ S+ S ++
Sbjct: 57 SIEDLATKASEVDGKVIGIDPGAGVMKSSEAAIKAYGL---KVKLLDGSDATMTSALKDA 113
Query: 187 QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLK 246
R V +W PH + + ++ YL ++ G E+ V T+ R P + +L+
Sbjct: 114 IRQKKDVVVTAWTPHWMFARYDLKYLADPKKSFGEAES-VNTLARKGLKADMPEVYGVLQ 172
Query: 247 NIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
K ++ E +M + + + + WL
Sbjct: 173 KFKLTIKDEEAVMAENEEKGAKPEETAAKWIAQNRATVDGWLK 215
>gi|313889344|ref|ZP_07822992.1| ABC transporter, substrate-binding protein, QAT family
[Streptococcus pseudoporcinus SPIN 20026]
gi|313122176|gb|EFR45267.1| ABC transporter, substrate-binding protein, QAT family
[Streptococcus pseudoporcinus SPIN 20026]
Length = 508
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 31/305 (10%), Positives = 82/305 (26%), Gaps = 38/305 (12%)
Query: 1 MYKILAVCLFLTTFSISYARDA------DSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
+ KIL + + + A + + I+E+
Sbjct: 206 LKKILLAFAVIVFGLLLSYSPKIVSHFTKKSETLVIAGKLGAEPEVLINIYKEIIEDQSD 265
Query: 55 YKTNIK--LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE---------------- 96
K +K +++LK+ IDI+ + + +
Sbjct: 266 LKVEVKSNFGKTSFLYQALKSGDIDIYPEFTGTITSSLLTSKTDLSTNPKKVYLDAKNGI 325
Query: 97 --EGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQR 154
+ ++ L+ Y LAV + + + + +
Sbjct: 326 AKQDNLVLLKPFAYQNTYALAVPEELAKEKGLTKISDLQAYQ--------GQLKAGFTLE 377
Query: 155 ILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPG 214
D + K + L + + + N + ++ ++ L
Sbjct: 378 FKDRADGYKGLQSKYGLTLPVSTMEPALRYQAIKANDIQITDAYSTDAELKKYHLKVLED 437
Query: 215 GEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFV 272
+ F +++ + K P + ++L + K + + +M + ++ V
Sbjct: 438 --DKHLFPPYQGAPLMKKALIQKHPELEKILNQLAGKITESQMQDMNYQVSVEGKEAGAV 495
Query: 273 GRTML 277
L
Sbjct: 496 AHDFL 500
>gi|169335903|ref|ZP_02863096.1| hypothetical protein ANASTE_02338 [Anaerofustis stercorihominis DSM
17244]
gi|169258641|gb|EDS72607.1| hypothetical protein ANASTE_02338 [Anaerofustis stercorihominis DSM
17244]
Length = 511
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 39/302 (12%), Positives = 89/302 (29%), Gaps = 34/302 (11%)
Query: 2 YKILAVCLFLTTFSISYAR-DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
K+ + L + + + + + A T+ + M ++E K N+
Sbjct: 215 RKLFTITAVLIVLCFAASMFNTFNQKTINIASKPMTEQYIISEMLKEVIESETDLKVNLT 274
Query: 61 L---LAVPVTFRSLKNKGIDIFMGYWYPSLEKFI---------------APYLEEGSIKL 102
+++K D++ Y + Y ++
Sbjct: 275 QGVGGGTSNIQPGMESKEFDMYPEYTSTGWNMVLKHDGFYDEKMFNKLNKEYNKKFDFSW 334
Query: 103 VAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINN 161
V + LAV +K+Y D+AK +L + ++
Sbjct: 335 VCNFGFNDTFGLAVRKDLAEKYDLKTYSDLAKVSNKLN---------FGAEYDFFERVDG 385
Query: 162 NKFSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISG 220
K + + + + N V + S ++ L +
Sbjct: 386 YDALCKEYGFNFSKTTDLDIGLKYKAINNKKVDVMDIFTTDGQLSVSDVVVLEDDKNFFS 445
Query: 221 FGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLR 278
A V+R++ L++ P I +L+ ++ +M + N +D + V L
Sbjct: 446 --SAMCMMVIRNEVLNEYPEIKTVLEKLEGVLDDNKMAKMNYDVEGNGKDAKTVSHEFLI 503
Query: 279 TH 280
+
Sbjct: 504 EN 505
>gi|323490499|ref|ZP_08095705.1| Substrate-binding region of ABC-type glycine betaine transport
system [Planococcus donghaensis MPA1U2]
gi|323395765|gb|EGA88605.1| Substrate-binding region of ABC-type glycine betaine transport
system [Planococcus donghaensis MPA1U2]
Length = 300
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 45/301 (14%), Positives = 93/301 (30%), Gaps = 33/301 (10%)
Query: 1 MYK-ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M K L + L TT D P+ WT+ + +E Y
Sbjct: 1 MKKATLGIVLAATTVIAGCGSGGDELDPLVIGGKPWTEQYILPYILGEYIEANSDYTVEY 60
Query: 60 K--LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP------------------YLEEGS 99
+ L V + +L+ ID+++ Y ++ + Y E
Sbjct: 61 EDGLGEVSILTPALEKGDIDMYVEYTGTGMKDVLKEESVPGQTSEEVLEIVRAGYEETLG 120
Query: 100 IKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEG-NQRILDM 158
+ Y LA + ++Y D+A+ + P E D+
Sbjct: 121 ATWLEPLGFENGYTLAYSKDS-GYDAETYSDLAEISQSEAMSFGAPHPFYERKGDGFDDL 179
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
++ F ++ + + + V ++ ++ ++
Sbjct: 180 VSTYPFEF------AETDSFDPAIMYEAVESGEVDVIPAFTTDSRIGLFDLETTKD--DL 231
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
S F + VVR + L++ P + +L + K S +M + +++ V R
Sbjct: 232 SFFPKYDAAPVVRLETLEEYPELEEVLNELAGKISEEEMLKMNSRVDVDQEVASDVAREF 291
Query: 277 L 277
L
Sbjct: 292 L 292
>gi|307705530|ref|ZP_07642383.1| choline transporter [Streptococcus mitis SK597]
gi|307620916|gb|EFN99999.1| choline transporter [Streptococcus mitis SK597]
Length = 506
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 38/303 (12%), Positives = 90/303 (29%), Gaps = 35/303 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDAD-SCTPVRFADTGWTDIAATTAMTSVILEEI--LGYKT 57
++ A+ L S S A A + A + M +++EE +
Sbjct: 209 IFSGFALVTLLLGLSYSPALLAQKEKENLVIAGKLGPEPEILANMYKLLIEENTSMTATV 268
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------EGS 99
+ +LK IDI+ + E + P + +
Sbjct: 269 KPNFGKTSFLYEALKKGDIDIYPEFTGTVTESLLQPSPKVSHEPEQVYNVARDGIAKQDH 328
Query: 100 IKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ + Y +AV G+K+ D+ K + +L D
Sbjct: 329 LAYLKPMSYQNTYAVAVPKKIAQEYGLKTISDLKKVEGQLK---------AGFTLEFNDR 379
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ NK + L + + ++ + ++ ++ L +
Sbjct: 380 EDGNKGLQSMYGLNLNVATMEPALRYQAIQSGDIQITDAYSTDAELERYDLQVLED--DK 437
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F +++ L K P + +L + K + + +++ + + + V +
Sbjct: 438 QLFPPYQGAPLMKEALLKKHPELETVLNKLAGKITESQMSQLNYQVGVEGKSAEQVAKEF 497
Query: 277 LRT 279
L+
Sbjct: 498 LQE 500
>gi|283470017|emb|CAQ49228.1| ABC transporter permease protein [Staphylococcus aureus subsp.
aureus ST398]
Length = 504
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 43/303 (14%), Positives = 92/303 (30%), Gaps = 35/303 (11%)
Query: 2 YKIL---AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
K+L V + + +I+ A + A ++ + T M +++EE
Sbjct: 207 KKLLMTLGVIVMIIILAIAIPMFAQKGDKITLAGKLGSEPSIITNMYKILIEEETKNTVE 266
Query: 59 IK--LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPY-----------------LEEGS 99
+K + F +LK+ ID ++ + L + ++
Sbjct: 267 VKDGMGKTAFLFNALKSDDIDGYLEFTGTVLGELTKEPLKSKEEKKVYDQAKQSLEKKYQ 326
Query: 100 IKLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ ++ Y LAV I++ D+ K K +L N+ +
Sbjct: 327 MTMLKPMKYNNTYALAVKRDFAKQHNIRTIGDLNKVKDQLKPGFTL--EFNDRPDGYKAV 384
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+L R +E + + ++ ++ L +
Sbjct: 385 QKAYNLNLDNIRTMEPKLR------YQAINKGNINLIDAYSTDAELKQYDMVVLKD--DK 436
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F + + +L K P I + L + K S M + +D V +
Sbjct: 437 HVFPPYQGAPLFKESFLKKHPEIKKPLNKLENKISDEDMQMMNYKVTVKNEDPYTVAKDY 496
Query: 277 LRT 279
L+
Sbjct: 497 LKE 499
>gi|226948964|ref|YP_002804055.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Clostridium botulinum
A2 str. Kyoto]
gi|226842249|gb|ACO84915.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Clostridium botulinum
A2 str. Kyoto]
Length = 527
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 44/298 (14%), Positives = 98/298 (32%), Gaps = 34/298 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--L 61
I+ VC+ L + V +T+ + ++++ K L
Sbjct: 237 IVGVCILLALVAPKILGMGH--KKVVIGSKNFTEQLILGNILEELIKDKTDMDVETKLNL 294
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFI-----------------APYLEEGSIKLVA 104
V+F +LK+ GID+++ Y + + + E+ I+++
Sbjct: 295 GGTQVSFNALKSGGIDMYIEYTGTAYGNILNIKEPNRDKDAVYNRVKKDFKEKFGIEILN 354
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYG-IEPGNEGNQRILDMINNNK 163
Y +A + + + KE I G ++ +
Sbjct: 355 PMGFNNTYAMATTKEIAQKY--NLKTTSDLAKESSNMIAGPTIEFANREDGLIGLNKAYN 412
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+ KG I+ NN + ++ + N+ L + S F +
Sbjct: 413 VNFKGVNPIDG------GLRYTALVNNETQIIDAFTTDGLIEQFNLVLLED--DKSFFPD 464
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+V+ + L K P + +L N+ + + ++ + NK+D + V + L+
Sbjct: 465 YYAVPIVKEETLKKFPELREVLGNLDGRITDEKMRKLNYEVDVNKRDPKQVAKEFLQK 522
>gi|149002157|ref|ZP_01827111.1| choline transporter [Streptococcus pneumoniae SP14-BS69]
gi|237649640|ref|ZP_04523892.1| choline transporter [Streptococcus pneumoniae CCRI 1974]
gi|237822107|ref|ZP_04597952.1| choline transporter [Streptococcus pneumoniae CCRI 1974M2]
gi|147759966|gb|EDK66956.1| choline transporter [Streptococcus pneumoniae SP14-BS69]
Length = 506
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 39/303 (12%), Positives = 91/303 (30%), Gaps = 35/303 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDAD-SCTPVRFADTGWTDIAATTAMTSVILEEI--LGYKT 57
++ A+ L S S A A + A + M +++EE +
Sbjct: 209 IFSGFALVALLLGLSYSPALLAQKEKENLIIAGKIGPEPEILANMYKLLIEENTSMTATV 268
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------EGS 99
+ +LK IDI+ + E + P + +
Sbjct: 269 KPNFGTTSFLYEALKKGDIDIYPEFTGTVTESLLQPSPKVSHEPEQVYQVARDGIAKQDH 328
Query: 100 IKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ + Y +AV G+K+ D+ K + +L D
Sbjct: 329 LAYLKPMSYQNTYAVAVPKKIAQEYGLKTISDLKKVEGQLK---------AGFTLEFNDR 379
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ NK + L + + ++ + ++ ++ L +
Sbjct: 380 EDGNKGLQSMYGLNLNVATMQPALRYQAIQSGDIQITDAYSTDAELERYDLQVLED--DK 437
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F +++ L K P + R+L + K + + +++ + + + V +
Sbjct: 438 QLFPPYQGAPLMKEALLKKHPELERVLNKLAGKITESQMSQLNYQVGVEGKSAKQVAKEF 497
Query: 277 LRT 279
L+
Sbjct: 498 LQE 500
>gi|258423372|ref|ZP_05686263.1| glycine betaine/carnitine/choline ABC transporter membrane protein
[Staphylococcus aureus A9635]
gi|257846433|gb|EEV70456.1| glycine betaine/carnitine/choline ABC transporter membrane protein
[Staphylococcus aureus A9635]
Length = 504
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 42/303 (13%), Positives = 91/303 (30%), Gaps = 35/303 (11%)
Query: 2 YKILAVC---LFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
K+L + + +I+ A + A ++ + T M +++EE
Sbjct: 207 KKLLITLGVIVMIIILAIAIPMFAQKGDKITLAGKLGSEPSIITNMYKILIEEETKNTVE 266
Query: 59 IK--LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPY-----------------LEEGS 99
+K + F +LK+ ID ++ + L + ++
Sbjct: 267 VKDGMGKTAFLFNALKSDDIDGYLEFTGTVLGELTKEPLKSKEEKKVYDQAKQSLEKKYQ 326
Query: 100 IKLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ ++ Y LAV I++ D+ K K +L N+ +
Sbjct: 327 MTMLKPMKYNNTYALAVKRDFAKQHNIRTIGDLNKVKDQLKPGFTL--EFNDRPDGYKAV 384
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+L R +E + + ++ ++ L +
Sbjct: 385 QKAYNLNLDNIRTMEPKLR------YQAINKGNINLIDAYSTDAELKQYDMVVLKD--DK 436
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F + + +L K P I + L + K S M + +D V +
Sbjct: 437 HVFPPYQGAPLFKESFLKKHPEIKKPLNKLANKISDEDMQMMNYKVTVKNEDPYTVAKDY 496
Query: 277 LRT 279
L+
Sbjct: 497 LKA 499
>gi|113475161|ref|YP_721222.1| glycine betaine transporter periplasmic subunit [Trichodesmium
erythraeum IMS101]
gi|110166209|gb|ABG50749.1| Substrate-binding region of ABC-type glycine betaine transport
system [Trichodesmium erythraeum IMS101]
Length = 336
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 49/326 (15%), Positives = 97/326 (29%), Gaps = 39/326 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRF--ADTGWTDIAATTAMTSVILEEILGYKTN 58
+ IL L + + + V A + W + + T + ++ LE LGYK
Sbjct: 6 LKIILGTILTSILIIFTSCQQVPNSQTVTIRTAHSTWIEESFQTNIVNIGLE-KLGYKVE 64
Query: 59 -IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
K + + S+ N ++ Y+ PS EKF E ++ V ++
Sbjct: 65 EPKQIEYTAIYISIANGDLEYSTIYYQPSHEKFFEKAGGEEKLEAVGILTPDGIAGYQID 124
Query: 118 DVGFALGIKSYQD---------IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
+ + + K A + G PG I I
Sbjct: 125 KKTADKYQITNIKELKNPEIAKLFDWDKNGKANLVGCNPGWACELNIDHHIEAYGLE-NT 183
Query: 169 FRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGE-------- 216
+ P ++ ++ PH I++ ++ +L
Sbjct: 184 VEHSRGQYNILLVDAITRYKQGQPILYFAYNPHWISAILKPGKDVVWLEVPFTSLPDMRN 243
Query: 217 ----------EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNK 266
+ GF V +L+ P R + ++ VA N I +
Sbjct: 244 ITKKDTLLDGKNIGFSRTQQSIVANKKFLESNPVAKRWFELVEIPVADMNTESLRIKEGE 303
Query: 267 QDRQFV---GRTMLRTHPDLLKNWLI 289
+ + + ++ + + NWL
Sbjct: 304 DKEEDILRHAQEWIKNNQEKYNNWLE 329
>gi|293570300|ref|ZP_06681369.1| glycine betaine/carnitine/choline ABC transporter, substrate
binding and permease protein [Enterococcus faecium E980]
gi|291609707|gb|EFF38968.1| glycine betaine/carnitine/choline ABC transporter, substrate
binding and permease protein [Enterococcus faecium E980]
Length = 512
Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats.
Identities = 41/301 (13%), Positives = 87/301 (28%), Gaps = 21/301 (6%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
LA + L Y + A + M ++E+ + +K
Sbjct: 212 TLAAVVCLFGGVSLYQSALFKNETITIAGKLGAEPEILIQMYKELIEDNTKTEVELKPNF 271
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIA-------PYLEEGSIKLVAENLQGAKYML 114
F +L IDI+ + LE + L + AE L ++ +
Sbjct: 272 GKTSFLFNALDQGQIDIYPEFTGTVLESLVKVPEAMKSADLTKEKTYDEAEELLNKQFDM 331
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPG------NEGNQRILDMINNNKFSLKG 168
+ + + E K +D + K +
Sbjct: 332 TLLKPMAYQNTYALAVKKSFADEHQLKKISDLAAVSDQIKAGFTLEFIDRSDGYKGIQEA 391
Query: 169 FRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
+ L +S + + + N + ++ + ++ L + +
Sbjct: 392 YGLNFSSVQSMEPSLRYQAINNGDVNIVDAYSTDSQLKEYDLVTLEDDQGLF--PAYQGA 449
Query: 228 TVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLK 285
++++D+ P I L + K + +M + K+ V RT L + LLK
Sbjct: 450 PLMKTDFAKDHPEIVEALNKLSGKITENQMIDMNYQVNVEKKKPAEVARTFL-ENEGLLK 508
Query: 286 N 286
Sbjct: 509 E 509
>gi|289167365|ref|YP_003445634.1| ABC transporter, permease [Streptococcus mitis B6]
gi|288906932|emb|CBJ21766.1| ABC transporter, permease [Streptococcus mitis B6]
Length = 506
Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats.
Identities = 37/303 (12%), Positives = 91/303 (30%), Gaps = 35/303 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDAD-SCTPVRFADTGWTDIAATTAMTSVILEEI--LGYKT 57
++ A+ L S S + A + A + M +++EE +
Sbjct: 209 IFSGFALVTILLGLSYSPSLLAQKEKENLVIAGKLGPEPEILANMYKLLIEENTSMTATV 268
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------EGS 99
+ +LK IDI+ + E + P + +
Sbjct: 269 KPNFGKTSFLYEALKKGDIDIYPEFTGTVTESLLQPSPKVSHEPDQVYQVARDGIAKQDH 328
Query: 100 IKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ + Y +AV G+K+ D+ K + +L D
Sbjct: 329 LAYLKPMSYQNTYAVAVPKKIAQEYGLKTISDLKKVEGQLK---------AGFTLEFNDR 379
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ NK + L + + ++ + ++ + ++ L +
Sbjct: 380 EDGNKGLQSMYGLNLNVATMEPALRYQAIQSGDIQITDAYSTDAELARYDLQVLED--DK 437
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F +++ L K P + +L + K + + +++ + + + V +
Sbjct: 438 QLFPPYQGAPLMKEALLKKHPELETVLNKLAGKITESQMSQLNYQVGVEGKSAEQVAKEF 497
Query: 277 LRT 279
L+
Sbjct: 498 LQE 500
>gi|168487331|ref|ZP_02711839.1| choline transporter [Streptococcus pneumoniae CDC1087-00]
gi|183569815|gb|EDT90343.1| choline transporter [Streptococcus pneumoniae CDC1087-00]
Length = 506
Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats.
Identities = 36/305 (11%), Positives = 90/305 (29%), Gaps = 39/305 (12%)
Query: 3 KILAVCLFLTTFSISYARDAD-----SCTPVRFADTGWTDIAATTAMTSVILEEI--LGY 55
+ + L T + + V A + M +++EE L
Sbjct: 207 RTIFSGFALVTVLLGLSYSPALLVQKEKENVIIAGKIGPEPEILANMYKLLIEENTSLTA 266
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------E 97
+ +LK+ IDI+ + E + P + +
Sbjct: 267 TVKPNFGKTTFLYEALKSGDIDIYPEFTGTVTESLLQPSPKVSHEPEQVYQVARDGIAKQ 326
Query: 98 GSIKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
+ + Y +AV G+K+ D+ K + +L A N+
Sbjct: 327 DHLAYLKPMSYQNTYAVAVPKKIAQEYGLKTISDLKKVEGQLKAGFTL--EFNDREDGNK 384
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ + +L L + + ++ + ++ ++ L
Sbjct: 385 GLQSMYGLNLNVSTLEP-------ALRYQAIQSGEIQITDAYSTDAELERYDLQVLED-- 435
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F +++ L K P + +L + K + + +++ + + + V +
Sbjct: 436 DKQLFPPYQGAPLMKEALLKKHPELETVLNKLAGKITESQMSQLNYQVGVEGKPAEQVAK 495
Query: 275 TMLRT 279
L+
Sbjct: 496 EFLQE 500
>gi|313899891|ref|ZP_07833394.1| ABC transporter, substrate-binding protein, QAT family [Clostridium
sp. HGF2]
gi|312955506|gb|EFR37171.1| ABC transporter, substrate-binding protein, QAT family [Clostridium
sp. HGF2]
Length = 515
Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats.
Identities = 41/300 (13%), Positives = 77/300 (25%), Gaps = 34/300 (11%)
Query: 2 YKILAVCLFLTTFS--ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+ +AV L + + + A T+ M ++E+ I
Sbjct: 216 KRAVAVVLLCILLAGCTTMLTIPSKKDTIHIATKPMTEEFIIGEMLKQLIEDRTDLSVEI 275
Query: 60 KL---LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP----------------YLEEGSI 100
++ D++ Y S + Y ++ +
Sbjct: 276 TKGVGGGTSNIHPAMVKGDFDMYPEYTGTSWSFVLKKKEIPEHDILYKELVREYKQQYHL 335
Query: 101 KLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMI 159
+ Y +AV + A +G E E + M+
Sbjct: 336 EWTGLYGFNNTYGIAVTKETAQRY--HLKTYADLASVSSRMSFGAEYDYYERDDGYDAMV 393
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
N F + S L + SD +I L
Sbjct: 394 KANDF------HFKKSIDLDIGLKYDALLKKEVDAILVFTTDGRISDPDIVVLQDENNYF 447
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLK--NIKFSVALENEMMKLILNNKQDRQFVGRTML 277
+ TVVR + L P + +L+ N + + EM + ++ V R L
Sbjct: 448 E--KYYAGTVVREETLATYPQLRSVLELLNGQITEKEMAEMNNDVETKGRNEADVARDFL 505
>gi|302332432|gb|ADL22625.1| ABC-type proline/glycine betaine transport systems, permease
component [Staphylococcus aureus subsp. aureus JKD6159]
Length = 504
Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats.
Identities = 43/303 (14%), Positives = 92/303 (30%), Gaps = 35/303 (11%)
Query: 2 YKIL---AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
K+L V + + +I+ A + A ++ + T M +++EE
Sbjct: 207 KKLLMTLGVIVMIIILAIAIPMFAQKGDKITLAGKLGSEPSIITNMYKILIEEETKNTVE 266
Query: 59 IK--LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPY-----------------LEEGS 99
+K + F +LK+ ID ++ + L + ++
Sbjct: 267 VKDGMGKTAFLFNALKSDDIDGYLEFTGTVLGELTKEPLKSKEEKKVYEQAKQSLEKKYQ 326
Query: 100 IKLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ ++ Y LAV I++ D+ K K +L N+ +
Sbjct: 327 MTMLKPMKYNNTYALAVKRDFAKQHNIRTIGDLNKVKDQLKPGFTL--EFNDRPDGYKAV 384
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+L R +E + + ++ ++ L +
Sbjct: 385 QKAYNLNLDNIRTMEPKLR------YQAINKGNINLIDAYSTDAELKQYDMVVLKD--DK 436
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F + + +L K P I + L + K S M + +D V +
Sbjct: 437 HVFPPYQGAPLFKESFLKKHPEIKKPLNKLENKISDEDMQMMNYKVTVKNEDPYTVAKDY 496
Query: 277 LRT 279
L+
Sbjct: 497 LKA 499
>gi|293377161|ref|ZP_06623369.1| ABC transporter, substrate-binding protein, QAT family
[Enterococcus faecium PC4.1]
gi|292644181|gb|EFF62283.1| ABC transporter, substrate-binding protein, QAT family
[Enterococcus faecium PC4.1]
Length = 512
Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats.
Identities = 41/301 (13%), Positives = 87/301 (28%), Gaps = 21/301 (6%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
LA + L Y + A + M ++E+ + +K
Sbjct: 212 TLAAVVCLVGGVSLYQSALFKNETITIAGKLGAEPEILIQMYKELIEDNTKTEVELKPNF 271
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIA-------PYLEEGSIKLVAENLQGAKYML 114
F +L IDI+ + LE + L + AE L ++ +
Sbjct: 272 GKTSFLFNALDQGQIDIYPEFTGTVLESLVKVPEAMKSADLTKEKTYDEAEELLNKQFDM 331
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPG------NEGNQRILDMINNNKFSLKG 168
+ + + E K +D + K +
Sbjct: 332 TLLKPMAYQNTYALAVKKSFADEHQLKKISDLAAVSNQIKAGFTLEFIDRSDGYKGIQEA 391
Query: 169 FRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
+ L +S + + + N + ++ + ++ L + +
Sbjct: 392 YGLNFSSVQSMEPSLRYQAINNGDVNIVDAYSTDSQLKEYDLVTLEDDQGLF--PAYQGA 449
Query: 228 TVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLK 285
++++D+ P I L + K + +M + K+ V RT L + LLK
Sbjct: 450 PLMKTDFAKDHPEIVEALNKLSGKITENQMIDMNYQVNVEKKKPAEVARTFL-ENEGLLK 508
Query: 286 N 286
Sbjct: 509 E 509
>gi|293366010|ref|ZP_06612712.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Streptococcus oralis ATCC 35037]
gi|307702406|ref|ZP_07639363.1| glycine betaine/carnitine/choline transport system permease
proteinopuCB [Streptococcus oralis ATCC 35037]
gi|291315553|gb|EFE56004.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Streptococcus oralis ATCC 35037]
gi|307624083|gb|EFO03063.1| glycine betaine/carnitine/choline transport system permease
proteinopuCB [Streptococcus oralis ATCC 35037]
Length = 506
Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats.
Identities = 34/305 (11%), Positives = 88/305 (28%), Gaps = 39/305 (12%)
Query: 3 KILAVCLFLTTFSISYARDAD-----SCTPVRFADTGWTDIAATTAMTSVILEEI--LGY 55
+ + L T + + + A + M +++EE +
Sbjct: 207 RTIFSGFALVTILLGLSYSPALLVQKEKENLVIAGKLGPEPEILANMYKLLIEENTSMTA 266
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------E 97
+ +LK IDI+ + E + P + +
Sbjct: 267 TVKPNFGKTSFLYEALKKGDIDIYPEFTGTVTESLLQPSPKVGHEPDQVYQVARDGIAKQ 326
Query: 98 GSIKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
+ + Y +AV G+K+ D+ K + +L
Sbjct: 327 DHLAYLKPMSYQNTYAVAVPKKIAQEYGLKTISDLKKVEGQLK---------AGFTLEFN 377
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
D + NK + L + + ++ + ++ + ++ L
Sbjct: 378 DREDGNKGLQSMYGLNLNVATMEPALRYQAIQSGDIQITDAYSTDAELARYDLQVLED-- 435
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F +++ L K P + +L + K + + +++ + + + V +
Sbjct: 436 DKQLFPPYQGAPLMKEALLKKHPELETVLNKLAGKITESQMSQLNYQVGVEGKSAEQVAK 495
Query: 275 TMLRT 279
L+
Sbjct: 496 EFLQE 500
>gi|307707562|ref|ZP_07644044.1| choline transporter [Streptococcus mitis NCTC 12261]
gi|307616514|gb|EFN95705.1| choline transporter [Streptococcus mitis NCTC 12261]
Length = 506
Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 38/303 (12%), Positives = 91/303 (30%), Gaps = 35/303 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDAD-SCTPVRFADTGWTDIAATTAMTSVILEEI--LGYKT 57
++ A+ L S S A A + A + M +++EE +
Sbjct: 209 IFSGFALVTILLGLSYSPALLAQKEKENLIIAGKLGPEPEILANMYKLLIEENTSMTATV 268
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------EGS 99
+ +LK IDI+ + E + P + +
Sbjct: 269 KPNFGKTSFLYEALKKGDIDIYPEFTGTVTESLLQPSPKVSHEPEQVYQVARDGIAKQDH 328
Query: 100 IKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ + Y +AV G+K+ D+ K + +L D
Sbjct: 329 LAYLKPMSYQNTYAVAVPKKIAQEYGLKTISDLKKVEGQLK---------AGFTLEFNDR 379
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ NK + L + + ++ + ++ + ++ L +
Sbjct: 380 EDGNKGLQSMYGLNLNVATMEPALRYQAIQSGDIQITDAYSTDAELARYDLQVLED--DK 437
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F +++ L K P + +L + K + + +++ + + + V +
Sbjct: 438 QLFPPYQGAPLMKEALLKKHPELETVLNKLAGKITESQMSQLNYQVGVEGKSAEQVAKEF 497
Query: 277 LRT 279
L+
Sbjct: 498 LQE 500
>gi|227358549|ref|ZP_03842874.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, substrate-binding protein [Proteus
mirabilis ATCC 29906]
gi|227161260|gb|EEI46334.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, substrate-binding protein [Proteus
mirabilis ATCC 29906]
Length = 331
Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 42/318 (13%), Positives = 97/318 (30%), Gaps = 35/318 (11%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLA 63
+ L + +S A V+ + ++ T + + LE LGY IK +
Sbjct: 9 TVLSATLISTQLSAADLPGKGVSVQPVQSTISEETFQTLIVNKALE-KLGYTVQPIKEVD 67
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
V + S+ N W P + + + + A ++
Sbjct: 68 YNVAYSSIANGDATFMAVSWVPLHNSQYEAAGGDNTFYRKGDYVVNAAQGYLIDKKTAEK 127
Query: 124 GIKSYQDIAKYKK---------ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
+ + K K + A + G PG + I + + +
Sbjct: 128 YNITNIEQFKDPKIAKLFDANGDGKADLTGCNPGWGCEEAINNHLKAYDLEKS-VTHNQG 186
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGE-------------- 216
+ A + + + +W P+ I+ ++ +L
Sbjct: 187 NYAAMMADTITRYKEGKSIFYYTWTPYWISDVLKPGKDVVWLQVPFSSLPGDDKTDTTLP 246
Query: 217 --EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV-- 272
+ GF ++++ + + P ++L + +K SVA N + N ++ + +
Sbjct: 247 NGKNYGFPPSTMHIATNKKWAEANPAAAKLFEIMKVSVADINAQNLRMHNGQKSQADIER 306
Query: 273 -GRTMLRTHPDLLKNWLI 289
++ H W+
Sbjct: 307 HANAWIKAHQKTFDGWVE 324
>gi|269798733|ref|YP_003312633.1| substrate-binding region of ABC-type glycine betaine transporter
[Veillonella parvula DSM 2008]
gi|269095362|gb|ACZ25353.1| Substrate-binding region of ABC-type glycine betaine transport
system [Veillonella parvula DSM 2008]
Length = 510
Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 32/303 (10%), Positives = 71/303 (23%), Gaps = 35/303 (11%)
Query: 1 MYK-ILAVCLFLTTFSISYARDADSCTPVR-----FADTGWTDIAATTAMTSVILEEILG 54
M + + +T ++ A C V+ A T+ + ++E+
Sbjct: 211 MKRYTIIFVSIMTLIAMGIGGWAMYCRHVKTDVIHIATKPMTEQLILGNVLKELIEKKTD 270
Query: 55 YKTNIKL---LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP---------------YLE 96
+ ++ + DI+ Y + + Y E
Sbjct: 271 LTVEVTEGVGGGTSNIQPAMLSGQFDIYPEYTGTAWSAVLKRTDAYDESLFNELSQAYKE 330
Query: 97 EGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
+ + + V Y + V + G
Sbjct: 331 KYNFEWVGMYGFNNTYGIGVRNEIAQSYGVKTYSDLARIAPSLTLG-GEYDFFGREDGYA 389
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ S +A++ + S I L
Sbjct: 390 GLQRVYGMSF------KATKDMDIGLKYTAISRGEVDAMPIFTTDGQLSMAPITVLQD-- 441
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ + VV S+ L P + +L+++ + +M + Q V
Sbjct: 442 DKHLYPSYMAGNVVHSEVLIAHPELRPVLESLNHTITDQEMAKMNYAVETEHQLPADVAH 501
Query: 275 TML 277
L
Sbjct: 502 QFL 504
>gi|319649284|ref|ZP_08003442.1| hypothetical protein HMPREF1013_00046 [Bacillus sp. 2_A_57_CT2]
gi|317398918|gb|EFV79598.1| hypothetical protein HMPREF1013_00046 [Bacillus sp. 2_A_57_CT2]
Length = 505
Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 32/298 (10%), Positives = 81/298 (27%), Gaps = 34/298 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL- 62
I + L S + ++ M +++E ++
Sbjct: 215 IFICAMILVMAIPLV--TNKSEENLVIGGKLGSEPEILINMYKLLIENETDLNVELQPGL 272
Query: 63 -AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP-----------------YLEEGSIKLVA 104
F +LK+ ID + + ++ +F+ E+ ++L+
Sbjct: 273 GKTSFVFNALKSGSIDAYPEFTGTAIAEFLKETAVSTDSGEVYEQARKGMKEQYDMELLE 332
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKF 164
Y LAV K ++ D + +
Sbjct: 333 PMAYNNTYALAVPKQLAEEFGLQSISDLKAVEKNIK--------AGFTLEFSDREDGYRG 384
Query: 165 SLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+ + + + L ++ + ++ + N+ L + +
Sbjct: 385 IQELYGVEFPTVLTMEPKLRYGAIEKGEINLVDAYSTDSEIARYNLTVLEDDKNLF--PP 442
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++R++ +++ P + R L + K S EM + + R L
Sbjct: 443 YQGAPLLRAETVEEHPELVRALNKLSGKISDDEMREMNYKVNVEGASAEETAREYLEK 500
>gi|294500672|ref|YP_003564372.1| putative glycine/betaine/carnitine/choline ABC transporter
permease/substrate-binding protein Opu [Bacillus
megaterium QM B1551]
gi|294350609|gb|ADE70938.1| putative glycine/betaine/carnitine/choline ABC transporter,
permease/substrate-binding protein Opu [Bacillus
megaterium QM B1551]
Length = 506
Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 33/283 (11%), Positives = 78/283 (27%), Gaps = 30/283 (10%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKN 73
+A + + + + M ++E+ K N++ F +L+N
Sbjct: 226 SPFAAMSATKPDLVIGGKIGAEQDILINMYKELIEDQTDMKVNLRSSLGKTVFVFEALRN 285
Query: 74 KGIDIFMGYWYPSLEKFIAPYLE-----------------EGSIKLVAENLQGAKYMLAV 116
K ID++ Y ++ + + + + + Y L V
Sbjct: 286 KEIDLYPEYTGTAIVTHLKEQPDSKDETEVYKQAKEGFQKKFGLVYLDPMKFNNTYTLTV 345
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ + + +E + + + + + +E
Sbjct: 346 TKEFAKENNLTTISDLANATDKVKAGFTLE-FKDREDGYVGIQKEYGLTFPNIKTVEPKL 404
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
R V ++ P + L ++ V+R D L
Sbjct: 405 R------YRAVEKGDINVLDAYATDPEIKQFGLKVLKDDQQFF--PPYQGAPVLREDTLK 456
Query: 237 KCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ P + ++L + K S EM + + + V L
Sbjct: 457 EHPELKKILNQLGGKISDDEMREMNYQVNAKGKTAEEVAHQFL 499
>gi|257887665|ref|ZP_05667318.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecium 1,141,733]
gi|257823719|gb|EEV50651.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecium 1,141,733]
Length = 512
Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 41/301 (13%), Positives = 87/301 (28%), Gaps = 21/301 (6%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
LA + L Y + A + M ++E+ + +K
Sbjct: 212 TLAAVVCLVGGVSLYQSALFKNETITIAGKLGAEPEILIQMYKELIEDNTKTEVELKPNF 271
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIA-------PYLEEGSIKLVAENLQGAKYML 114
F +L IDI+ + LE + L + AE L ++ +
Sbjct: 272 GKTSFLFNALDQGQIDIYPEFTGTVLESLVKVPAAMKSADLTKEKTYDEAEELLNKQFDM 331
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPG------NEGNQRILDMINNNKFSLKG 168
+ + + E K +D + K +
Sbjct: 332 TLLKPMAYQNTYALAVKKSFADEHQLKKISDLAAVSNQIKAGFTLEFIDRSDGYKGIQEA 391
Query: 169 FRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
+ L +S + + + N + ++ + ++ L + +
Sbjct: 392 YGLNFSSVQSMEPSLRYQAINNGDVNIVDAYSTDSQLKEYDLVTLEDDQGLF--PAYQGA 449
Query: 228 TVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLK 285
++++D+ P I L + K + +M + K+ V RT L + LLK
Sbjct: 450 PLMKTDFAKDHPEIVEALNKLSGKITENQMIDMNYQVNVEKKKPAEVARTFL-ENEGLLK 508
Query: 286 N 286
Sbjct: 509 E 509
>gi|266621955|ref|ZP_06114890.1| quaternary amine uptake ABC transporter family, substrate-binding
protein [Clostridium hathewayi DSM 13479]
gi|288866344|gb|EFC98642.1| quaternary amine uptake ABC transporter family, substrate-binding
protein [Clostridium hathewayi DSM 13479]
Length = 335
Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 44/292 (15%), Positives = 93/292 (31%), Gaps = 29/292 (9%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-LA 63
L + + + + +R +T+ + + ++ L++ GYK K +A
Sbjct: 48 LVLTAVMAASLTACGASSSGKDVIRVGSKDFTESLVVSEIYALALQDA-GYKVERKQDIA 106
Query: 64 VPVTFRSLKNKGIDIFMGYWYPS----------------LEKFIAPYLEEGSIKLVAENL 107
V SL N ID++ Y Y + + + +
Sbjct: 107 GSVVHTSLINNEIDLYPEYTGTGLLSILQMDMITDPEEVYRTVKDEYEKRFQVTWLDYSK 166
Query: 108 QGAKYMLAVNDVGFAL-GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSL 166
L + GI++ D+ K+ KEL G + + +
Sbjct: 167 ANDGQGLVIRTDVAEQLGIRTISDLQKHAKELRFASQG--EFDAREDGLPALEQKYGAFD 224
Query: 167 KGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV 226
++S + N V ++ + + Y+ ++ + ++
Sbjct: 225 W-----KSSRVYDGGLKYEVLSNGEADVAPAYTTEGQLAQKD-KYMLLEDDKQVWPPYNL 278
Query: 227 YTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
VVR D L+K P I+ +L I + + NK++ + V R
Sbjct: 279 APVVRDDVLEKNPGIADILNKISASLDTDTVTALNAEVDVNKREYEEVAREY 330
>gi|322390806|ref|ZP_08064316.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Streptococcus
parasanguinis ATCC 903]
gi|321142476|gb|EFX37944.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Streptococcus
parasanguinis ATCC 903]
Length = 506
Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 34/303 (11%), Positives = 87/303 (28%), Gaps = 39/303 (12%)
Query: 3 KILAVCLFLTTFSISYARDAD-----SCTPVRFADTGWTDIAATTAMTSVILEEI--LGY 55
+ + + + + + A + M +++EE +
Sbjct: 207 RTIVAAFAVMLLGLGASYAPSMIPQKEKENLVIAGKLGPEPEILMNMYKLLIEENSDMTV 266
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------E 97
+++LK IDI+ + + P + +
Sbjct: 267 TVKPNFGKTDFLYQALKKGDIDIYPEFTGTITSSLLQPAPKVSNDSKEVFKVARDGIKKQ 326
Query: 98 GSIKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
++ L+ Y +AV +K+ D+ K + +L A N+
Sbjct: 327 DNLALLKPMAYQNTYAIAVPKSIAKEYNLKTISDLKKVQDKLKAGFTL--EFNDREDGNK 384
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ + +L + + + + ++ P + N+ L
Sbjct: 385 GLQSVYGLNLNVATMEP-------ALRYEAIQQGNIQITDAYSTDPEIAQYNLVVLED-- 435
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F +++ L K P + +L + K + + ++M + + V R
Sbjct: 436 DQHLFPPYQGAPLMKEALLKKHPELEGILNKLAGKITESQMSQMNYQVGVEGKPAAKVAR 495
Query: 275 TML 277
L
Sbjct: 496 EFL 498
>gi|282918514|ref|ZP_06326251.1| ABC transporter permease [Staphylococcus aureus subsp. aureus C427]
gi|282317648|gb|EFB48020.1| ABC transporter permease [Staphylococcus aureus subsp. aureus C427]
Length = 504
Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 43/303 (14%), Positives = 92/303 (30%), Gaps = 35/303 (11%)
Query: 2 YKIL---AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
K+L V + + +I+ A + A ++ + T M +++EE
Sbjct: 207 KKLLMTLGVIVMIIILAIAIPMFAQKGDKITLAGKLGSEPSIITNMYKILIEEETKNTVE 266
Query: 59 IK--LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPY-----------------LEEGS 99
+K + F +LK+ ID ++ + L + ++
Sbjct: 267 VKDGMGKTAFLFNALKSDDIDGYLEFTGTVLGELTKEPLKSKEEKKVYDQAKQSLEKKYQ 326
Query: 100 IKLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ ++ Y LAV I++ D+ K K +L N+ +
Sbjct: 327 MTMLKPMKYNNTYALAVKRDFAKQHNIRTIGDLNKIKDQLKPGFTL--EFNDRPDGYKAV 384
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+L R +E + + ++ ++ L +
Sbjct: 385 QKAYNLNLDNIRTMEPKLR------YQAINKGNINLIDAYSTDAELKQYDMVVLKD--DK 436
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F + + +L K P I + L + K S M + +D V +
Sbjct: 437 HVFPPYQGAPLFKESFLKKHPEIKKPLNKLENKISDEDMQMMNYKVTVKNEDPYTVAKDY 496
Query: 277 LRT 279
L+
Sbjct: 497 LKA 499
>gi|49482979|ref|YP_040203.1| ABC transporter permease [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257424842|ref|ZP_05601269.1| ABC transporter permease [Staphylococcus aureus subsp. aureus
55/2053]
gi|257427510|ref|ZP_05603909.1| ABC transporter permease [Staphylococcus aureus subsp. aureus
65-1322]
gi|257430142|ref|ZP_05606526.1| ABC transporter permease [Staphylococcus aureus subsp. aureus
68-397]
gi|257432843|ref|ZP_05609203.1| ABC transporter permease [Staphylococcus aureus subsp. aureus
E1410]
gi|257435747|ref|ZP_05611795.1| ABC transporter permease [Staphylococcus aureus subsp. aureus M876]
gi|282903351|ref|ZP_06311242.1| osmoprotectant ABC transporter, permease protein [Staphylococcus
aureus subsp. aureus C160]
gi|282905130|ref|ZP_06312988.1| ABC transporter permease [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282908107|ref|ZP_06315938.1| ABC transporter permease [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282910367|ref|ZP_06318171.1| ABC transporter permease [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282913561|ref|ZP_06321350.1| osmoprotectant ABC transporter, permease protein [Staphylococcus
aureus subsp. aureus M899]
gi|282923479|ref|ZP_06331159.1| ABC transporter permease [Staphylococcus aureus subsp. aureus C101]
gi|283957553|ref|ZP_06375006.1| osmoprotectant ABC transporter, permease protein [Staphylococcus
aureus subsp. aureus A017934/97]
gi|293500607|ref|ZP_06666458.1| ABC transporter permease [Staphylococcus aureus subsp. aureus
58-424]
gi|293509554|ref|ZP_06668265.1| ABC transporter permease [Staphylococcus aureus subsp. aureus M809]
gi|293524140|ref|ZP_06670827.1| osmoprotectant ABC transporter, permease protein [Staphylococcus
aureus subsp. aureus M1015]
gi|295427299|ref|ZP_06819934.1| ABC transporter permease [Staphylococcus aureus subsp. aureus
EMRSA16]
gi|297590350|ref|ZP_06948989.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, membrane protein [Staphylococcus
aureus subsp. aureus MN8]
gi|49241108|emb|CAG39786.1| ABC transporter permease protein [Staphylococcus aureus subsp.
aureus MRSA252]
gi|257272412|gb|EEV04535.1| ABC transporter permease [Staphylococcus aureus subsp. aureus
55/2053]
gi|257275703|gb|EEV07176.1| ABC transporter permease [Staphylococcus aureus subsp. aureus
65-1322]
gi|257279339|gb|EEV09940.1| ABC transporter permease [Staphylococcus aureus subsp. aureus
68-397]
gi|257282258|gb|EEV12393.1| ABC transporter permease [Staphylococcus aureus subsp. aureus
E1410]
gi|257284938|gb|EEV15057.1| ABC transporter permease [Staphylococcus aureus subsp. aureus M876]
gi|282314347|gb|EFB44737.1| ABC transporter permease [Staphylococcus aureus subsp. aureus C101]
gi|282322593|gb|EFB52915.1| osmoprotectant ABC transporter, permease protein [Staphylococcus
aureus subsp. aureus M899]
gi|282325759|gb|EFB56067.1| ABC transporter permease [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282327772|gb|EFB58054.1| ABC transporter permease [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282331955|gb|EFB61466.1| ABC transporter permease [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282596306|gb|EFC01267.1| osmoprotectant ABC transporter, permease protein [Staphylococcus
aureus subsp. aureus C160]
gi|283791004|gb|EFC29819.1| osmoprotectant ABC transporter, permease protein [Staphylococcus
aureus subsp. aureus A017934/97]
gi|290921103|gb|EFD98164.1| osmoprotectant ABC transporter, permease protein [Staphylococcus
aureus subsp. aureus M1015]
gi|291095612|gb|EFE25873.1| ABC transporter permease [Staphylococcus aureus subsp. aureus
58-424]
gi|291467651|gb|EFF10166.1| ABC transporter permease [Staphylococcus aureus subsp. aureus M809]
gi|295128687|gb|EFG58318.1| ABC transporter permease [Staphylococcus aureus subsp. aureus
EMRSA16]
gi|297576649|gb|EFH95364.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, membrane protein [Staphylococcus
aureus subsp. aureus MN8]
gi|312438855|gb|ADQ77926.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, membrane protein [Staphylococcus
aureus subsp. aureus TCH60]
gi|315194340|gb|EFU24732.1| ABC transporter permease protein [Staphylococcus aureus subsp.
aureus CGS00]
Length = 504
Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 43/303 (14%), Positives = 92/303 (30%), Gaps = 35/303 (11%)
Query: 2 YKIL---AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
K+L V + + +I+ A + A ++ + T M +++EE
Sbjct: 207 KKLLMTLGVIVMIIILAIAIPMFAQKGDKITLAGKLGSEPSIITNMYKILIEEETKNTVE 266
Query: 59 IK--LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPY-----------------LEEGS 99
+K + F +LK+ ID ++ + L + ++
Sbjct: 267 VKDGMGKTAFLFNALKSDDIDGYLEFTGTVLGELTKEPLKSKEEKKVYDQAKQSLEKKYQ 326
Query: 100 IKLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ ++ Y LAV I++ D+ K K +L N+ +
Sbjct: 327 MTMLKPMKYNNTYALAVKRDFAKQHNIRTIGDLNKIKDQLKPGFTL--EFNDRPDGYKAV 384
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+L R +E + + ++ ++ L +
Sbjct: 385 QKAYNLNLDNIRTMEPKLR------YQAINKGNINLIDAYSTDAELKQYDMVVLKD--DK 436
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F + + +L K P I + L + K S M + +D V +
Sbjct: 437 HVFPPYQGAPLFKESFLKKHPEIKKPLNKLENKISDEDMQMMNYKVTVKNEDPYTVAKDY 496
Query: 277 LRT 279
L+
Sbjct: 497 LKA 499
>gi|312868033|ref|ZP_07728237.1| ABC transporter, substrate-binding protein, QAT family
[Streptococcus parasanguinis F0405]
gi|311096437|gb|EFQ54677.1| ABC transporter, substrate-binding protein, QAT family
[Streptococcus parasanguinis F0405]
Length = 506
Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 33/303 (10%), Positives = 85/303 (28%), Gaps = 39/303 (12%)
Query: 3 KILAVCLFLTTFSISYARDAD-----SCTPVRFADTGWTDIAATTAMTSVILEEI--LGY 55
+ + + + + + A + M +++EE +
Sbjct: 207 RTIVAAFAVMLLGLGASYAPSMIPQKEKENLVIAGKLGPEPEILMNMYKLLIEENSDMTV 266
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------E 97
+++LK IDI+ + + P + +
Sbjct: 267 TVKPNFGKTDFLYQALKKGDIDIYPEFTGTITSSLLQPAPKVSNDSEEVFKVARDGIKKQ 326
Query: 98 GSIKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
+ L+ Y +AV +K+ D+ K + +L A N+
Sbjct: 327 DHLALLKPMAYQNTYAIAVPKKIAKEYNLKTISDLKKVQDKLKAGFTL--EFNDREDGNK 384
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ + +L + + + + ++ P + ++ L
Sbjct: 385 GLQSVYGLNLNVATMEP-------ALRYEAIQQGNIQITDAYSTDPEIAQYDLVVLED-- 435
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
F +++ L K P + +L + K + + ++M + + V R
Sbjct: 436 NQHLFPPYQGAPLMKEALLKKHPELEGILNKLSGKITESQMSQMNYQVGVEGKPAAQVAR 495
Query: 275 TML 277
L
Sbjct: 496 DFL 498
>gi|94988603|ref|YP_596704.1| glycine betaine transport system permease protein [Streptococcus
pyogenes MGAS9429]
gi|94992427|ref|YP_600526.1| glycine betaine transport system permease protein / glycine
betaine-binding protein [Streptococcus pyogenes
MGAS2096]
gi|94542111|gb|ABF32160.1| glycine betaine transport system permease protein [Streptococcus
pyogenes MGAS9429]
gi|94545935|gb|ABF35982.1| Glycine betaine transport system permease protein / Glycine
betaine-binding protein [Streptococcus pyogenes
MGAS2096]
Length = 520
Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 32/297 (10%), Positives = 85/297 (28%), Gaps = 34/297 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--L 61
I + L + ++ ++ + V A + + ++E+ +K
Sbjct: 227 ITLLALLASYTPMALSQFSKGKDTVVIAGKLGAEPDILINLYKELIEDQSDISVELKSNF 286
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------EGSIKLV 103
+ +LK+ ID++ + + + + L+
Sbjct: 287 GKTSFLYEALKSGDIDMYPEFTGTITSSLLRDKPPLSNDPKQVYEDAKKGIAKQDKLTLL 346
Query: 104 AENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
Y +A+ + I++ D+ + L D +
Sbjct: 347 KPFAYQNTYAVAMPEKLAKEYQIETISDLKAHADTLK---------AGFTLEFKDRADGY 397
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
K + L + + + ++ V ++ + ++ L + F
Sbjct: 398 KGMQSQYGLQLSVATMEPALRYQAIQSGDIQVTDAYSTDAEITKYHLKVLKD--DKQLFP 455
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
++++ L K P + +L + K + +M + D V R L
Sbjct: 456 PYQGAPLMKTSLLTKHPELKGILNQLAGKITEKEMQDMNYEVSVKGADANKVARDYL 512
>gi|92114476|ref|YP_574404.1| substrate-binding region of ABC-type glycine betaine transport
system [Chromohalobacter salexigens DSM 3043]
gi|91797566|gb|ABE59705.1| Substrate-binding region of ABC-type glycine betaine transport
system [Chromohalobacter salexigens DSM 3043]
Length = 294
Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 37/301 (12%), Positives = 81/301 (26%), Gaps = 31/301 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M ++ + A+ + +T+ ++MT+ LE LGY +
Sbjct: 1 MKTLMPLLTGAVLAGSLATAQANE---IVVGGKNFTEQQILSSMTTQYLE-GLGYDVEKR 56
Query: 61 LL-AVPVTFRSLKNKGIDIFMGYWYPSLEKF----------------IAPYLEEGSIKLV 103
V ++ +N ID++ Y SL + + E + +
Sbjct: 57 AGLGSAVLRQAQENGQIDLYWEYTGTSLINYNDESAEGLTVDETYQKVKELDAEKGLVWL 116
Query: 104 AENLQGAKYMLAVNDVGFALGIKSYQDIAKY--KKELGAKIYGIEPGNEGNQRILDMINN 161
+ Y LA+ + E G +
Sbjct: 117 EPSDANNTYALAMRKESVEETGITTLSDLAQAVNDEQGLTFAMNAEFYAREDGWRPLQQA 176
Query: 162 NKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
+F + + + R+ V L + + L +
Sbjct: 177 YEFRAGRGDVKRMDSG----LVYQALRDEQVDVGLVFATDGRIPAFDFQVLEDDQNFF-- 230
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++ VVR LD P ++ + + + + + +K + V L
Sbjct: 231 PAYALTPVVRQATLDANPELAEQMNTLSGLLDNDTMSTLNARVDVDKTSIERVAENFLEE 290
Query: 280 H 280
+
Sbjct: 291 N 291
>gi|170760479|ref|YP_001787041.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Clostridium botulinum
A3 str. Loch Maree]
gi|169407468|gb|ACA55879.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Clostridium botulinum
A3 str. Loch Maree]
Length = 527
Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 43/298 (14%), Positives = 96/298 (32%), Gaps = 34/298 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--L 61
I+ CL L + V +T+ + ++++ K L
Sbjct: 237 IVGACLVLPLIVSNLIGMGH--KKVVIGSKNFTEQLILGNILEELIKDKTDIDVETKLNL 294
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFI-----------------APYLEEGSIKLVA 104
V+F +LK GID+++ Y + + + E+ I+++
Sbjct: 295 GGTQVSFNALKAGGIDMYVEYTGTAYGNILNIKEPNRDKDVVYNRVKKDFKEKFGIEVLN 354
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYG-IEPGNEGNQRILDMINNNK 163
Y +A + + + KE I G ++ +
Sbjct: 355 PIGFNNTYAMATTKEIAQKY--NLKTTSDLAKESSNMIAGPTIEFANREDGLIGLNKAYN 412
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+ KG + I+ NN + ++ + N+ L + F +
Sbjct: 413 VNFKGVKPIDG------GLRYTALVNNETQIIDAFTTDGLIEQFNLVLLED--DKRFFPD 464
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+V+ + L K P + +L N+ + + ++ + NK+D + V + L+
Sbjct: 465 YYAVPIVKEETLKKFPELREVLGNLDGRITDEKMRKLNYEVDVNKRDPKQVAKEFLQK 522
>gi|312898162|ref|ZP_07757553.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Megasphaera micronuciformis
F0359]
gi|310620659|gb|EFQ04228.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Megasphaera micronuciformis
F0359]
Length = 501
Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 29/289 (10%), Positives = 78/289 (26%), Gaps = 16/289 (5%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
++ + + ++ + V A T+ M ++E K +K
Sbjct: 210 TVSFLIIAIGTTAAFVQPNMPHNKVIIAGKLGTEPDILINMYKELIEAHSDLKVELKPNF 269
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL----EEGSIKLVAENLQGAKYMLAVN 117
+ ++K+ IDI+ + + ++ +L + L
Sbjct: 270 GKTAFLYEAIKSGDIDIYPEFTGTVTTTLLKEKPTPSTNAETVYKQGRDLIYKQDHLVYL 329
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPG------NEGNQRILDMINNNKFSLKGFRL 171
+ + + + + K D + + + L
Sbjct: 330 EPMAYENTYAVAVPSAFAETHSLKTISDLVRVSDYAVAGFTLEFTDREDGYRGLQSLYGL 389
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVR 231
+ + +N + ++ ++ L + F ++R
Sbjct: 390 NLHVKTMEPALRYEALKNGAITITDAYSTDSELVQYDLVVLQD--DKHLFPSYRGAPLIR 447
Query: 232 SDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
L P + +L + K + M + N + Q V + L+
Sbjct: 448 ESVLIDHPELKEILNALGGKITEDEMRTMNYDVRVNGKSAQDVAKHYLQ 496
>gi|307710729|ref|ZP_07647158.1| glycine betaine/carnitine/choline transport system permease
proteinopuCB [Streptococcus mitis SK321]
gi|307617500|gb|EFN96671.1| glycine betaine/carnitine/choline transport system permease
proteinopuCB [Streptococcus mitis SK321]
Length = 506
Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 38/303 (12%), Positives = 91/303 (30%), Gaps = 35/303 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDAD-SCTPVRFADTGWTDIAATTAMTSVILEEI--LGYKT 57
++ A+ L S S A A + A + M +++EE +
Sbjct: 209 IFSGFALVTILLGLSYSPALLAQKEKENLVIAGKLGPEPEILANMYKLLIEENTSMTATV 268
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------EGS 99
+ +LK IDI+ + E + P + +
Sbjct: 269 KPNFGKTSFLYEALKKGDIDIYPEFTGTVTESLLQPSPKVSHEPDQVYQVARDGIAKQDH 328
Query: 100 IKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ + Y +AV G+K+ D+ K + +L D
Sbjct: 329 LAYLKPMSYQNTYAVAVPKKIAQEYGLKTISDLKKVEGQLK---------AGFTLEFNDR 379
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ NK + L + + ++ + ++ + ++ L +
Sbjct: 380 EDGNKGLQSMYGLNLNVATMEPALRYQAIQSGDIQITDAYSTDAELARYDLQVLED--DK 437
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F +++ L K P + +L + K + + +++ + + + V +
Sbjct: 438 QLFPPYQGAPLMKEVLLKKHPELETVLNKLAGKITESQMSQLNYQVGVEGKSAEQVAKEF 497
Query: 277 LRT 279
L+
Sbjct: 498 LQE 500
>gi|253990653|ref|YP_003042009.1| glycine betaine transporter periplasmic subunit [Photorhabdus
asymbiotica subsp. asymbiotica ATCC 43949]
gi|253782103|emb|CAQ85267.1| glycine betaine-binding periplasmic protein prox [Photorhabdus
asymbiotica]
Length = 333
Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 46/333 (13%), Positives = 95/333 (28%), Gaps = 39/333 (11%)
Query: 1 MYKILAVCLFLTTFSIS----YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
MYK + + + IS A V+ + T+ T + + LE LGY
Sbjct: 1 MYKTVTWAVVALSSLISPQISAAELPGKGISVQPVQSTITEETFQTLIVNKALE-KLGYD 59
Query: 57 TN-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
IK + V + S+ + W P + V ++ +
Sbjct: 60 IKPIKEVDYNVAYSSIASGDATFMAVSWEPLHNNQYQAAGGDTKFYRVGNYVENSAQGYL 119
Query: 116 VNDVGFALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSL 166
++ + + A + G PG I + S
Sbjct: 120 IDKTTAEKYNITNIAQLKDPKIAKLFDTNDNGKADLTGCNPGWGCEAAINHHLKAYGLS- 178
Query: 167 KGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEEI---- 218
+ + A + + P ++ +W P+ I+ ++ +L
Sbjct: 179 NSVEHNQGNYAAMMADTITRYKEGRPILYYTWTPYWISDVLKPGKDVIWLQVPFSAMPNG 238
Query: 219 ------------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNN- 265
GF + ++ + + P ++L +K +A N + N
Sbjct: 239 EKIDTKLPNGANYGFPPSIMHIAANKKWAENNPAAAKLFSIMKMPIADINAQNLRMHNGE 298
Query: 266 --KQDRQFVGRTMLRTHPDLLKNWLIGVTTFDG 296
+ D + ++ H L W+ G
Sbjct: 299 ASQADIERHANGWIQAHQKLFDGWVKTAIKAAG 331
>gi|29829973|ref|NP_824607.1| glycine betaine-binding lipoprotein [Streptomyces avermitilis
MA-4680]
gi|29607083|dbj|BAC71142.1| putative glycine betaine ABC transporter solute-binding protein
[Streptomyces avermitilis MA-4680]
Length = 324
Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 43/309 (13%), Positives = 95/309 (30%), Gaps = 26/309 (8%)
Query: 6 AVCLFLTTFSISYA---------RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
+ + L A A V + W + A+ +L+ LGY+
Sbjct: 17 GLAVLLLATGCGAADMTKQASPFAGAQGAKTVTLSVQSWVGAQSNVAVAQYLLQHKLGYR 76
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ + + +L +D + W E+ ++ +I V
Sbjct: 77 VDTVQVDEVPAWDALSQGRVDALLEDWG-HPEQEKRYVQDKKTIAPAGGLGVTGHIGWYV 135
Query: 117 NDVGFA--LGIKSYQDIAKYKKELGAKIYGIEPG---NEGNQRILDMINNNKFSLKGFRL 171
+ ++++ KY +L G + + D N L +
Sbjct: 136 PTYFAEQHPDVTDWRNLNKYASQLRTAESGGKGQLLDGSPSYVTNDKALVNNLKLNYQVV 195
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE-----------ISG 220
SE A +Q+R+ + P + + P + + + +
Sbjct: 196 FAGSEAAQITQMRQFAKEKKPFLTYWYAPQWLFKKVPMTEVKLPAYKEGCDADAKKVACA 255
Query: 221 FGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ + + +D+ +R LK K++ +NE+ +I + K + + + H
Sbjct: 256 YPHTPLQKYLNADFAKSGGKAARFLKKFKWTTEDQNEVALMIADQKLTPEEAAKKWVDGH 315
Query: 281 PDLLKNWLI 289
K WL
Sbjct: 316 ASTWKAWLS 324
>gi|298694052|gb|ADI97274.1| osmoprotectant ABC transporter, permease protein [Staphylococcus
aureus subsp. aureus ED133]
gi|323438929|gb|EGA96664.1| glycine betaine/carnitine/choline ATP-binding ABC transport protein
[Staphylococcus aureus O11]
gi|323441578|gb|EGA99227.1| glycine betaine/carnitine/choline ATP-binding ABC transport protein
[Staphylococcus aureus O46]
Length = 504
Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 43/303 (14%), Positives = 92/303 (30%), Gaps = 35/303 (11%)
Query: 2 YKIL---AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
K+L V + + +I+ A + A ++ + T M +++EE
Sbjct: 207 KKLLMTLGVIVMIIILAIAIPMFAQKGDKITLAGKLGSEPSIITNMYKILIEEETKNTVE 266
Query: 59 IK--LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPY-----------------LEEGS 99
+K + F +LK+ ID ++ + L + ++
Sbjct: 267 VKDGMGKTAFLFNALKSDDIDGYLEFTGTVLGELTKEPLKSKEEKKVYKQAKQSLEKKYQ 326
Query: 100 IKLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ ++ Y LAV I++ D+ K K +L N+ +
Sbjct: 327 MTMLKPMKYNNTYALAVKRDFAKQHNIRTIGDLNKVKDQLKPGFTL--EFNDRPDGYKAV 384
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+L R +E + + ++ ++ L +
Sbjct: 385 QKAYNLNLDNIRTMEPKLR------YQAINKGNINLIDAYSTDAELKQYDMVVLKD--DK 436
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F + + +L K P I + L + K S M + +D V +
Sbjct: 437 HVFPPYQGAPLFKESFLKKHPEIKKPLNKLENKISDEDMQMMNYKVTVKNEDPYTVAKDY 496
Query: 277 LRT 279
L+
Sbjct: 497 LKA 499
>gi|15923713|ref|NP_371247.1| choline transporter [Staphylococcus aureus subsp. aureus Mu50]
gi|15926400|ref|NP_373933.1| hypothetical protein SA0678 [Staphylococcus aureus subsp. aureus
N315]
gi|21282414|ref|NP_645502.1| hypothetical protein MW0685 [Staphylococcus aureus subsp. aureus
MW2]
gi|49485595|ref|YP_042816.1| ABC transporter permease protein [Staphylococcus aureus subsp.
aureus MSSA476]
gi|57651559|ref|YP_185657.1| osmoprotectant ABC transporter, permease protein [Staphylococcus
aureus subsp. aureus COL]
gi|82750425|ref|YP_416166.1| glycine betaine/carnitine/choline ATP-binding ABC transport protein
[Staphylococcus aureus RF122]
gi|87162224|ref|YP_493410.1| osmoprotectant ABC transporter, permease [Staphylococcus aureus
subsp. aureus USA300_FPR3757]
gi|88194497|ref|YP_499292.1| amino acid ABC transporter permease [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|148267182|ref|YP_001246125.1| substrate-binding region of ABC-type glycine betaine transport
system [Staphylococcus aureus subsp. aureus JH9]
gi|150393231|ref|YP_001315906.1| substrate-binding region of ABC-type glycine betaine transport
system [Staphylococcus aureus subsp. aureus JH1]
gi|151220903|ref|YP_001331725.1| ABC transporter permease protein [Staphylococcus aureus subsp.
aureus str. Newman]
gi|156979051|ref|YP_001441310.1| hypothetical protein SAHV_0720 [Staphylococcus aureus subsp. aureus
Mu3]
gi|161508987|ref|YP_001574646.1| glycine betaine/carnitine/choline ABC transporter membrane protein
[Staphylococcus aureus subsp. aureus USA300_TCH1516]
gi|221140938|ref|ZP_03565431.1| glycine betaine/carnitine/choline ABC transporter membrane protein
[Staphylococcus aureus subsp. aureus str. JKD6009]
gi|253315360|ref|ZP_04838573.1| osmoprotectant ABC transporter, permease [Staphylococcus aureus
subsp. aureus str. CF-Marseille]
gi|253731346|ref|ZP_04865511.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Staphylococcus aureus subsp. aureus USA300_TCH959]
gi|253732833|ref|ZP_04866998.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Staphylococcus aureus subsp. aureus TCH130]
gi|255005514|ref|ZP_05144115.2| osmoprotectant ABC transporter, permease [Staphylococcus aureus
subsp. aureus Mu50-omega]
gi|257794957|ref|ZP_05643936.1| osmoprotectant ABC transporter [Staphylococcus aureus A9781]
gi|258421570|ref|ZP_05684495.1| osmoprotectant ABC transporter [Staphylococcus aureus A9719]
gi|258430764|ref|ZP_05688476.1| choline transporter [Staphylococcus aureus A9299]
gi|258441744|ref|ZP_05691016.1| glycine betaine/carnitine/choline ATP-binding ABC transporter
[Staphylococcus aureus A8115]
gi|258445815|ref|ZP_05693992.1| osmoprotectant ABC transporter [Staphylococcus aureus A6300]
gi|258449626|ref|ZP_05697728.1| osmoprotectant ABC transporter [Staphylococcus aureus A6224]
gi|258452931|ref|ZP_05700925.1| osmoprotectant ABC transporter [Staphylococcus aureus A5948]
gi|258454026|ref|ZP_05701998.1| ABC transporter permease [Staphylococcus aureus A5937]
gi|262048455|ref|ZP_06021340.1| hypothetical protein SAD30_2182 [Staphylococcus aureus D30]
gi|262052786|ref|ZP_06024974.1| hypothetical protein SA930_0343 [Staphylococcus aureus 930918-3]
gi|269202342|ref|YP_003281611.1| osmoprotectant ABC transporter, permease protein [Staphylococcus
aureus subsp. aureus ED98]
gi|282894488|ref|ZP_06302717.1| osmotically activated L-carnitine/choline ABC transporter, permease
OpuCB [Staphylococcus aureus A8117]
gi|282922016|ref|ZP_06329713.1| osmotically activated L-carnitine/choline ABC transporter, permease
OpuCB [Staphylococcus aureus A9765]
gi|282926586|ref|ZP_06334216.1| osmotically activated L-carnitine/choline ABC transporter, permease
OpuCB [Staphylococcus aureus A10102]
gi|284023744|ref|ZP_06378142.1| osmoprotectant ABC transporter, permease protein [Staphylococcus
aureus subsp. aureus 132]
gi|294849392|ref|ZP_06790135.1| ABC transporter [Staphylococcus aureus A9754]
gi|295406441|ref|ZP_06816247.1| osmotically activated L-carnitine/choline ABC transporter
[Staphylococcus aureus A8819]
gi|296274786|ref|ZP_06857293.1| osmoprotectant ABC transporter, permease protein [Staphylococcus
aureus subsp. aureus MR1]
gi|297245168|ref|ZP_06929042.1| osmotically activated L-carnitine/choline ABC transporter
[Staphylococcus aureus A8796]
gi|300912645|ref|ZP_07130088.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, membrane protein [Staphylococcus
aureus subsp. aureus TCH70]
gi|304381662|ref|ZP_07364311.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, membrane protein [Staphylococcus
aureus subsp. aureus ATCC BAA-39]
gi|13700614|dbj|BAB41911.1| SA0678 [Staphylococcus aureus subsp. aureus N315]
gi|14246492|dbj|BAB56885.1| choline transporter [Staphylococcus aureus subsp. aureus Mu50]
gi|21203851|dbj|BAB94550.1| MW0685 [Staphylococcus aureus subsp. aureus MW2]
gi|49244038|emb|CAG42464.1| ABC transporter permease protein [Staphylococcus aureus subsp.
aureus MSSA476]
gi|57285745|gb|AAW37839.1| osmoprotectant ABC transporter, permease protein [Staphylococcus
aureus subsp. aureus COL]
gi|82655956|emb|CAI80360.1| glycine betaine/carnitine/choline ATP-binding ABC transport protein
[Staphylococcus aureus RF122]
gi|87128198|gb|ABD22712.1| osmoprotectant ABC transporter, permease [Staphylococcus aureus
subsp. aureus USA300_FPR3757]
gi|87202055|gb|ABD29865.1| amino acid ABC transporter, permease protein, putative
[Staphylococcus aureus subsp. aureus NCTC 8325]
gi|147740251|gb|ABQ48549.1| Substrate-binding region of ABC-type glycine betaine transport
system [Staphylococcus aureus subsp. aureus JH9]
gi|149945683|gb|ABR51619.1| Substrate-binding region of ABC-type glycine betaine transport
system [Staphylococcus aureus subsp. aureus JH1]
gi|150373703|dbj|BAF66963.1| ABC transporter permease protein [Staphylococcus aureus subsp.
aureus str. Newman]
gi|156721186|dbj|BAF77603.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
gi|160367796|gb|ABX28767.1| possible glycine betaine/carnitine/choline ABC superfamily ATP
binding cassette transporter, membrane protein
[Staphylococcus aureus subsp. aureus USA300_TCH1516]
gi|253725087|gb|EES93816.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Staphylococcus aureus subsp. aureus USA300_TCH959]
gi|253729198|gb|EES97927.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Staphylococcus aureus subsp. aureus TCH130]
gi|257788929|gb|EEV27269.1| osmoprotectant ABC transporter [Staphylococcus aureus A9781]
gi|257842496|gb|EEV66920.1| osmoprotectant ABC transporter [Staphylococcus aureus A9719]
gi|257849436|gb|EEV73406.1| choline transporter [Staphylococcus aureus A9299]
gi|257852213|gb|EEV76140.1| glycine betaine/carnitine/choline ATP-binding ABC transporter
[Staphylococcus aureus A8115]
gi|257855391|gb|EEV78329.1| osmoprotectant ABC transporter [Staphylococcus aureus A6300]
gi|257857134|gb|EEV80033.1| osmoprotectant ABC transporter [Staphylococcus aureus A6224]
gi|257859442|gb|EEV82296.1| osmoprotectant ABC transporter [Staphylococcus aureus A5948]
gi|257863891|gb|EEV86647.1| ABC transporter permease [Staphylococcus aureus A5937]
gi|259159327|gb|EEW44383.1| hypothetical protein SA930_0343 [Staphylococcus aureus 930918-3]
gi|259163543|gb|EEW48100.1| hypothetical protein SAD30_2182 [Staphylococcus aureus D30]
gi|262074632|gb|ACY10605.1| osmoprotectant ABC transporter, permease protein [Staphylococcus
aureus subsp. aureus ED98]
gi|269940300|emb|CBI48677.1| ABC transporter permease protein [Staphylococcus aureus subsp.
aureus TW20]
gi|282591479|gb|EFB96551.1| osmotically activated L-carnitine/choline ABC transporter, permease
OpuCB [Staphylococcus aureus A10102]
gi|282593674|gb|EFB98666.1| osmotically activated L-carnitine/choline ABC transporter, permease
OpuCB [Staphylococcus aureus A9765]
gi|282763201|gb|EFC03332.1| osmotically activated L-carnitine/choline ABC transporter, permease
OpuCB [Staphylococcus aureus A8117]
gi|285816424|gb|ADC36911.1| Osmotically activated L-carnitine/choline ABC transporter, permease
protein OpuCB [Staphylococcus aureus 04-02981]
gi|294823924|gb|EFG40350.1| ABC transporter [Staphylococcus aureus A9754]
gi|294968586|gb|EFG44609.1| osmotically activated L-carnitine/choline ABC transporter
[Staphylococcus aureus A8819]
gi|297177839|gb|EFH37088.1| osmotically activated L-carnitine/choline ABC transporter
[Staphylococcus aureus A8796]
gi|300886891|gb|EFK82093.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, membrane protein [Staphylococcus
aureus subsp. aureus TCH70]
gi|302750620|gb|ADL64797.1| ABC-type proline/glycine betaine transport systems, permease
component [Staphylococcus aureus subsp. aureus str.
JKD6008]
gi|304339765|gb|EFM05710.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, membrane protein [Staphylococcus
aureus subsp. aureus ATCC BAA-39]
gi|312829215|emb|CBX34057.1| choline transport system permease protein opuBB [Staphylococcus
aureus subsp. aureus ECT-R 2]
gi|315129399|gb|EFT85392.1| possible glycine betaine/carnitine/choline ABC superfamily ATP
binding cassette transporter, membrane protein
[Staphylococcus aureus subsp. aureus CGS03]
gi|315197700|gb|EFU28035.1| possible glycine betaine/carnitine/choline ABC superfamily ATP
binding cassette transporter, membrane protein
[Staphylococcus aureus subsp. aureus CGS01]
gi|320139946|gb|EFW31807.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Staphylococcus aureus subsp.
aureus MRSA131]
gi|320141965|gb|EFW33793.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Staphylococcus aureus subsp.
aureus MRSA177]
gi|329313444|gb|AEB87857.1| Substrate-binding region of ABC-type glycine betaine transport
system [Staphylococcus aureus subsp. aureus T0131]
gi|329724504|gb|EGG61011.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Staphylococcus aureus subsp.
aureus 21172]
gi|329728502|gb|EGG64935.1| ABC transporter, substrate-binding protein, QAT family
[Staphylococcus aureus subsp. aureus 21189]
gi|329729684|gb|EGG66085.1| ABC transporter, substrate-binding protein, QAT family
[Staphylococcus aureus subsp. aureus 21193]
Length = 504
Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 43/303 (14%), Positives = 92/303 (30%), Gaps = 35/303 (11%)
Query: 2 YKIL---AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
K+L V + + +I+ A + A ++ + T M +++EE
Sbjct: 207 KKLLMTLGVIVMIIILAIAIPMFAQKGDKITLAGKLGSEPSIITNMYKILIEEETKNTVE 266
Query: 59 IK--LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPY-----------------LEEGS 99
+K + F +LK+ ID ++ + L + ++
Sbjct: 267 VKDGMGKTAFLFNALKSDDIDGYLEFTGTVLGELTKEPLKSKEEKKVYEQAKQSLEKKYQ 326
Query: 100 IKLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ ++ Y LAV I++ D+ K K +L N+ +
Sbjct: 327 MTMLKPMKYNNTYALAVKRDFAKQHNIRTIGDLNKVKDQLKPGFTL--EFNDRPDGYKAV 384
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+L R +E + + ++ ++ L +
Sbjct: 385 QKAYNLNLDNIRTMEPKLR------YQAINKGNINLIDAYSTDAELKQYDMVVLKD--DK 436
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F + + +L K P I + L + K S M + +D V +
Sbjct: 437 HVFPPYQGAPLFKESFLKKHPEIKKPLNKLENKISDEDMQMMNYKVTVKNEDPYTVAKDY 496
Query: 277 LRT 279
L+
Sbjct: 497 LKA 499
>gi|330952903|gb|EGH53163.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae Cit 7]
Length = 297
Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 42/304 (13%), Positives = 90/304 (29%), Gaps = 32/304 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M +I A +R G+T+ +T+ L Y I
Sbjct: 1 MKRI--CLFLGFALLFPALAQAAEKPLLRIGARGFTEQTMLAELTAQYLRTK-NYDVQIT 57
Query: 61 LL-AVPVTFRSLKNKGIDIFMGYWYPSLEKF---------------IAPYLEEGSIKLVA 104
+ + ++ +D+ Y SL + + + + ++
Sbjct: 58 GGLGSNLARSAQESGQLDLLWEYTGVSLVAYNHIDEKLDSAQTYARVKEVDAKKGLVWLS 117
Query: 105 ENLQGAKYMLAVNDVGFALG-----IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI 159
+ Y LA+ + + K + + G + + ++ M+
Sbjct: 118 PSKFNNTYALALPQKVADKYPQINTMTELTKVLKDEAKEGHVVALDTEFANRSDGLIGMV 177
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
+ +L + + RN L + + + L +
Sbjct: 178 KHYDMNLGREN----TRQMDAGLVYTALRNGQVFAGLVYTTDGRLNAFKLKVLED--DKH 231
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
F + + V+R +YLDK P+I+ LLK + ++ + + V L
Sbjct: 232 YFPDYTAAPVIRQEYLDKHPDIATLLKPLADLLDNQTMIDLNARVDVGHESPSTVAADFL 291
Query: 278 RTHP 281
R HP
Sbjct: 292 RQHP 295
>gi|19746081|ref|NP_607217.1| ABC transporter [Streptococcus pyogenes MGAS8232]
gi|19748252|gb|AAL97716.1| putative ABC transporter (binding protein) [Streptococcus pyogenes
MGAS8232]
Length = 508
Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 33/297 (11%), Positives = 85/297 (28%), Gaps = 34/297 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--L 61
I + L + ++ ++ + V A + + ++E+ +K
Sbjct: 215 ITLLALLASYTPMALSQFSKGKDTVVIAGKLGAEPDILINLYKELIEDQSDISVELKSNF 274
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------EGSIKLV 103
+ +LK+ IDI+ + + + + L+
Sbjct: 275 GKTSFLYEALKSGDIDIYPEFTGTITSSLLRDKPPLSNDPKQVYEDAKKGIAKQDKLTLL 334
Query: 104 AENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
Y +A+ + I++ D+ + L D +
Sbjct: 335 KAFAYQNTYAVAMPEKLAKEYQIETISDLKAHADTLK---------AGFTLEFKDRADGY 385
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
K + L + + + ++ V ++ + ++ L + F
Sbjct: 386 KGMQSQYGLQLSVATMEPALRYQAIQSGDIQVTDAYSTDAEITKYHLKVLKD--DKQLFP 443
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
++++ L K P + +L + K + +M + D V R L
Sbjct: 444 PYQGAPLMKTSLLTKHPELKGILNQLAGKITEKEMQDMNYEVSVKGADANKVARDYL 500
>gi|332201271|gb|EGJ15342.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Streptococcus pneumoniae GA47901]
Length = 506
Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 34/296 (11%), Positives = 84/296 (28%), Gaps = 21/296 (7%)
Query: 3 KILAVCLFLTTFSISYARDAD-----SCTPVRFADTGWTDIAATTAMTSVILEEI--LGY 55
+ + L + + + A + M +++EE +
Sbjct: 207 RTIFSGFALVALLLGLSYSPALLVQKEKENLIIAGKIGPEPEILANMYKLLIEENTSMTA 266
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE----EGSIKLVAENLQGAK 111
+ +LK IDI+ + E + P + + VA + +
Sbjct: 267 TVKPNFGTTSFLYEALKKGDIDIYPEFTGTVTESLLQPSPKVSHEPEQVYQVARDGIAKQ 326
Query: 112 YMLAVNDVGFALGIKSYQDIAKYKKELGAKIYG------IEPGNEGNQRILDMINNNKFS 165
LA + K +E G K + D + NK
Sbjct: 327 DYLAYLKPMSYQNTYAVAVPKKIAQEYGLKTISDLKKVEGQLKAGFTLEFNDREDGNKGL 386
Query: 166 LKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEAS 225
+ L + + ++ + ++ ++ L + F
Sbjct: 387 QSMYGLNLNVATMQPALRYQAIQSGDIQITDAYSTDAELERYDLQVLED--DKQLFPPYQ 444
Query: 226 VYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+++ L K P + R+L + K + + +++ + + + V + L+
Sbjct: 445 GAPLMKEALLKKHPELERVLNKLAGKITESQMSQLNYQVGVEGKSAEQVAKEFLQE 500
>gi|271501795|ref|YP_003334821.1| glycine betaine ABC transporter substrate-binding protein [Dickeya
dadantii Ech586]
gi|270345350|gb|ACZ78115.1| Substrate-binding region of ABC-type glycine betaine transport
system [Dickeya dadantii Ech586]
Length = 341
Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 43/320 (13%), Positives = 89/320 (27%), Gaps = 36/320 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKLL 62
LAV L+T + V+ + ++ T + S LE LGY +
Sbjct: 17 TLAVTTILSTSLFAADNLPGKGITVKPVQSTLSEETFQTLLVSKALE-KLGYTVDKPSEV 75
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
V + S+ N W P + + + + GA ++
Sbjct: 76 DYNVGYTSIANGDATFTAVNWQPLHDDMYQAAGGDTAFYRQGTYVSGAAQGYLIDKKTAD 135
Query: 123 LGIKSY---------QDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+ + ++ A + G PG I I S +
Sbjct: 136 QYHITRLDQLKDPKLATLFDTNRDGKADLTGCNPGWGCESVINHQIQAYGLS-GTVNHNQ 194
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEP----HPINSDLNIHYLPGGEE------------ 217
+ A + + P ++ +W P + ++ +L
Sbjct: 195 GNYAALIADTIARYKQGKPILYFTWTPYWVSDVLVPGRDVVWLQVPFSSLPGKQKETDTK 254
Query: 218 -----ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
GF ++ V + K P ++L + +A N + + ++ +
Sbjct: 255 LPNGANYGFPVNNMRIVANKSWAQKNPAAAKLFAIMTLPLADINAQNLRMHQGEASQEDI 314
Query: 273 GRT---MLRTHPDLLKNWLI 289
R + H W+
Sbjct: 315 ERHVNGWINAHQAQFDGWIN 334
>gi|282916061|ref|ZP_06323824.1| osmotically activated L-carnitine/choline ABC transporter, permease
OpuCB [Staphylococcus aureus subsp. aureus D139]
gi|283769885|ref|ZP_06342777.1| osmotically activated L-carnitine/choline ABC transporter permease
OpuCB [Staphylococcus aureus subsp. aureus H19]
gi|282320009|gb|EFB50356.1| osmotically activated L-carnitine/choline ABC transporter, permease
OpuCB [Staphylococcus aureus subsp. aureus D139]
gi|283460032|gb|EFC07122.1| osmotically activated L-carnitine/choline ABC transporter permease
OpuCB [Staphylococcus aureus subsp. aureus H19]
Length = 504
Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats.
Identities = 43/303 (14%), Positives = 92/303 (30%), Gaps = 35/303 (11%)
Query: 2 YKIL---AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
K+L V + + +I+ A + A ++ + T M +++EE
Sbjct: 207 KKLLMTLGVIVMIIILAIAIPMFAQKGDKITLAGKLGSEPSIITNMYKILIEEETKNTVE 266
Query: 59 IK--LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPY-----------------LEEGS 99
+K + F +LK+ ID ++ + L + ++
Sbjct: 267 VKDGMGKTAFLFNALKSDDIDGYLEFTGTVLGELTKEPLKSKEEKKVYDQAKQSLEKKYQ 326
Query: 100 IKLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ ++ Y LAV I++ D+ K K +L N+ +
Sbjct: 327 MTMLKPMKYNNTYALAVKRDFAKQHNIRTIGDLNKVKDQLKPGFTL--EFNDRPDGYKAV 384
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+L R +E + + ++ ++ L +
Sbjct: 385 QKAYNLNLDNIRTMEPKLR------YQAINKGNINLIDAYSTDAELKQYDMVVLKD--DK 436
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F + + +L K P I + L + K S M + +D V +
Sbjct: 437 HVFPPYQGAPLFKESFLKKHPEIKKPLNKLENKISDEDMQMMNYKVTVKNEDPYTVAKDY 496
Query: 277 LRT 279
L+
Sbjct: 497 LKA 499
>gi|21910328|ref|NP_664596.1| putative ABC transporter (binding protein) [Streptococcus pyogenes
MGAS315]
gi|21904524|gb|AAM79399.1| putative ABC transporter (binding protein) [Streptococcus pyogenes
MGAS315]
Length = 508
Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats.
Identities = 32/297 (10%), Positives = 85/297 (28%), Gaps = 34/297 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--L 61
I + L + ++ ++ + V A + + ++E+ +K
Sbjct: 215 ITLLALLASYTPMALSQFSKGKDTVVIAGKLGAEPDILINLYKELIEDQSDISVELKSNF 274
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------EGSIKLV 103
+ +LK+ IDI+ + + + + L+
Sbjct: 275 GKTSFLYEALKSGDIDIYPEFTGTITSSLLRDKPPLSNDPKQVYEDAKKGIAKQDKLTLL 334
Query: 104 AENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
Y +A+ + I++ D+ + L D +
Sbjct: 335 KPFAYQNTYAVAMPEKLAKEYQIETISDLKAHADTLK---------AGFTLEFKDRTDGY 385
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
K + L + + + ++ V ++ + ++ L + F
Sbjct: 386 KGMQSQYGLQLSVATMEPALRYQAIQSGDIQVTDAYSTDAEITKYHLKVLKD--DKQLFP 443
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
++++ L K P + +L + K + +M + D + R L
Sbjct: 444 PYQGAPLMKTSLLTKHPELKGILNQLAGKITEKEMQDMNYEVSVKGADANKIARDYL 500
>gi|84685718|ref|ZP_01013615.1| hypothetical protein 1099457000253_RB2654_07094 [Maritimibacter
alkaliphilus HTCC2654]
gi|84666384|gb|EAQ12857.1| hypothetical protein RB2654_07094 [Rhodobacterales bacterium
HTCC2654]
Length = 284
Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats.
Identities = 44/288 (15%), Positives = 97/288 (33%), Gaps = 12/288 (4%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M +L ++ W D+ T +T +LE+ GY +
Sbjct: 1 MRGLLKTLTASAMALGLATPLVAQDDVIKMGTLAWEDLTPITGVTKRVLEDH-GYTVEVT 59
Query: 61 LLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ + + +L I++ + + + + ++ ++ G +AV
Sbjct: 60 EFSEWGIAYAALAKGDIEVLTSHVDYVAHDYWSR--NKNRLEKISPVSHGLYQAIAVPKY 117
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
I S +++ + + KI G+EPG+ + ++++ + L +LIE S
Sbjct: 118 V---TIDSIEELNENADKFDGKIVGLEPGSGLMREAAEVVDAYELDL---KLIEGSTAGM 171
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+ ++ WEP + N +L + I + Y + + + P
Sbjct: 172 TAALKAAVDREEWIAVTLWEPSWMVQKYNTKFLADPKGIFA-PPQTYYWIAQDVFSAAKP 230
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
+ ++ + M + + Q L H DLL W
Sbjct: 231 GAREAIASVYLPLQDITAMNAAV-KDGQTMDQAVSDWLDAHADLLSRW 277
>gi|290510983|ref|ZP_06550352.1| glycine betaine/proline transport system substrate-binding protein
[Klebsiella sp. 1_1_55]
gi|289775976|gb|EFD83975.1| glycine betaine/proline transport system substrate-binding protein
[Klebsiella sp. 1_1_55]
Length = 332
Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats.
Identities = 45/321 (14%), Positives = 91/321 (28%), Gaps = 36/321 (11%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLA 63
A L S A V+ A + ++ T + S LE LGY +
Sbjct: 9 TAAFATLIATSTFAADLPGKGITVKPAQSTISEETFQTLLVSRALE-KLGYTVEKPSEVD 67
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
V + S+ W P + A + + GA ++
Sbjct: 68 YNVAYTSIAAGDTTFIATNWQPLHDDMYAAAGGDNKFYRKGVYVSGAAQGYLIDKKTAEQ 127
Query: 124 GIKSYQD---------IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
+ D + + A + G PG I I+ S +
Sbjct: 128 YHITSIDQLKDPQIAKLFDTNNDGKADLTGCTPGWGCEAVINHQIDAYGLSKT-VTHNQG 186
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEE------------- 217
+ A + + P ++ +W P+ ++ ++ +L
Sbjct: 187 NYAAMMADTIARYKEGKPVLYYTWTPYWVSDVLKPGKDVVWLQVPFSSLPGEQKNIDTKL 246
Query: 218 ----ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV- 272
GF +++ V + +K P + L +K +A N ++ +
Sbjct: 247 ANGANYGFPVNTMHIVANKAWAEKNPAAATLFSVMKLPIADINAENAMMHEGHASEADIN 306
Query: 273 --GRTMLRTHPDLLKNWLIGV 291
++ H L +W+
Sbjct: 307 GHVDGWIKAHQPLFDSWVKAA 327
>gi|257898796|ref|ZP_05678449.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecium Com15]
gi|257836708|gb|EEV61782.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecium Com15]
Length = 512
Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats.
Identities = 41/301 (13%), Positives = 86/301 (28%), Gaps = 21/301 (6%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
LA + L Y + A + M ++E+ + +K
Sbjct: 212 TLAAVVCLFGGVSLYQSALFKNETITIAGKLGAEPEILIQMYKELIEDNTKTEVELKPNF 271
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIA-------PYLEEGSIKLVAENLQGAKYML 114
F +L IDI+ + LE + L + AE L ++ +
Sbjct: 272 GKTSFLFNALDQGQIDIYPEFTGTVLESLVKVPEAMKSADLTKEKTYDEAEELLNKQFDM 331
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPG------NEGNQRILDMINNNKFSLKG 168
+ + + E K +D + K +
Sbjct: 332 TLLKPMAYQNTYALAVKKSFADEHQLKKISDLAAVSDQIKAGFTLEFIDRSDGYKGIQEA 391
Query: 169 FRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
+ L +S + + + N + ++ + ++ L + +
Sbjct: 392 YGLNFSSVQSMEPSLRYQAINNGDVNIVDAYSTDSQLKEYDLVTLEDDQGLF--PAYQGA 449
Query: 228 TVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLK 285
++++D+ P I L + K + M + K+ V RT L + LLK
Sbjct: 450 PLMKTDFAKDHPEIVEALNKLSGKITENQMINMNYQVNVEKKKPAEVARTFL-ENEGLLK 508
Query: 286 N 286
Sbjct: 509 E 509
>gi|306824664|ref|ZP_07458008.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Streptococcus sp. oral taxon 071 str. 73H25AP]
gi|304432875|gb|EFM35847.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Streptococcus sp. oral taxon 071 str. 73H25AP]
Length = 506
Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats.
Identities = 38/303 (12%), Positives = 91/303 (30%), Gaps = 35/303 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDAD-SCTPVRFADTGWTDIAATTAMTSVILEEI--LGYKT 57
++ A+ L S S A A + A + M +++EE +
Sbjct: 209 IFSGFALVTILLGLSYSPALLAQKEKENLVIAGKLGPEPEILANMYKLLIEENTSMTATV 268
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------EGS 99
+ +LK IDI+ + E + P + +
Sbjct: 269 KPNFGKTSFLYEALKKDDIDIYPEFTGTVTESLLQPSPKVGHEPEQVYQVARDGIAKQDH 328
Query: 100 IKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ + Y +AV G+K+ D+ K + +L D
Sbjct: 329 LAYLKPMSYQNTYAVAVPKKIAQEYGLKTISDLKKVEGQLK---------AGFTLEFNDR 379
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ NK + L + + ++ + ++ + ++ L +
Sbjct: 380 EDGNKGLQSMYGLNLNVATMEPALRYQAIQSGDIQITDAYSTDAELARYDLQVLED--DK 437
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F +++ L K P + +L + K + + +++ + + + V +
Sbjct: 438 QLFPPYQGAPLMKEALLKKHPELETVLNKLAGKITESQMSQLNYQVGVEGKSAEQVAKEF 497
Query: 277 LRT 279
L+
Sbjct: 498 LQE 500
>gi|258418273|ref|ZP_05682538.1| osmoprotectant ABC transporter [Staphylococcus aureus A9763]
gi|257839066|gb|EEV63545.1| osmoprotectant ABC transporter [Staphylococcus aureus A9763]
Length = 504
Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats.
Identities = 43/303 (14%), Positives = 92/303 (30%), Gaps = 35/303 (11%)
Query: 2 YKIL---AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
K+L V + + +I+ A + A ++ + T M +++EE
Sbjct: 207 KKLLMTLGVIVMIIILAIAIPMFAQKGDKITLAGKLGSEPSIITNMYKILIEEETKNTVE 266
Query: 59 IK--LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPY-----------------LEEGS 99
+K + F +LK+ ID ++ + L + ++
Sbjct: 267 VKDGMGKTAFLFNALKSDDIDGYLEFTGTVLGELTKEPLKSKEEKKVYEQAKQSLEKKYQ 326
Query: 100 IKLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ ++ Y LAV I++ D+ K K +L N+ +
Sbjct: 327 MTMLKPMKYNNTYALAVKSDFAKQHNIRTIGDLNKVKDQLKPGFTL--EFNDRPDGYKAV 384
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+L R +E + + ++ ++ L +
Sbjct: 385 QKAYNLNLDNIRTMEPKLR------YQAINKGNINLIDAYSTDAELKQYDMVVLKD--DK 436
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F + + +L K P I + L + K S M + +D V +
Sbjct: 437 HVFPPYQGAPLFKESFLKKHPEIKKPLNKLENKISDEDMQMMNYKVTVKNEDPYTVAKDY 496
Query: 277 LRT 279
L+
Sbjct: 497 LKA 499
>gi|322377543|ref|ZP_08052034.1| choline transporter [Streptococcus sp. M334]
gi|321281743|gb|EFX58752.1| choline transporter [Streptococcus sp. M334]
Length = 511
Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats.
Identities = 38/303 (12%), Positives = 91/303 (30%), Gaps = 35/303 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDAD-SCTPVRFADTGWTDIAATTAMTSVILEEI--LGYKT 57
++ A+ L S S A A + A + M +++EE +
Sbjct: 214 IFSGFALVTVLLGLSYSPALLAQKEKENLVIAGKLGPEPEILANMYKLLIEENTSMTATV 273
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------EGS 99
+ +LK IDI+ + E + P + +
Sbjct: 274 KPNFGKTSFLYEALKKGDIDIYPEFTGTVTESLLQPSPKVSHEPEQVYQVARDGIAKQDH 333
Query: 100 IKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ + Y +AV G+K+ D+ K + +L D
Sbjct: 334 LAYLKPMSYQNTYAVAVPKKIAQEYGLKTISDLKKVEGQLK---------AGFTLEFNDR 384
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ NK + L + + ++ + ++ + ++ L +
Sbjct: 385 EDGNKGLQSMYGLNLNVATMEPALRYQAIQSGDIQITDAYSTDAELARYDLQVLED--DK 442
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F +++ L K P + +L + K + + +++ + + + V +
Sbjct: 443 QLFPPYQGAPLMKEVLLKKHPELETVLNKLAGKITESQMSQLNYQVGVEGKSAEQVAKEF 502
Query: 277 LRT 279
L+
Sbjct: 503 LQE 505
>gi|294790449|ref|ZP_06755607.1| choline transporter [Scardovia inopinata F0304]
gi|294458346|gb|EFG26699.1| choline transporter [Scardovia inopinata F0304]
Length = 507
Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats.
Identities = 41/305 (13%), Positives = 88/305 (28%), Gaps = 39/305 (12%)
Query: 1 MYKILAVCLFLTT-----FSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILG- 54
+ KI+A L L F+ + A S + A + M ++E+
Sbjct: 206 LKKIMAAFLVLVLGLIGSFTPAMITHATSSDTLVIAGKLGPEPEILMNMYKQLIEDETNI 265
Query: 55 -YKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE----------------- 96
+++L IDI+ + E +
Sbjct: 266 SVTVKPNFGKTTFLYKALLRGDIDIYPEFTGTVTESLLKTKPPVSTHPATVYRQARDGIK 325
Query: 97 -EGSIKLVAENLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKKELGAKIYGIEPGNEGNQR 154
+ S+ L+ Y +AV G+K D+ K + A N+ +
Sbjct: 326 KQDSLILLKPMKFEDTYAVAVKKSYAHQFGLKDISDLKKVQASAKAAFTA--EFNDRDDG 383
Query: 155 ILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPG 214
+ + L + + ++N + ++ + N+ L
Sbjct: 384 NRGLASKYGLKLSVITMDPSLR-------YTAIKDNTVQIVDAYSTDAEIAQYNLVTLTD 436
Query: 215 GEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFV 272
F ++++ L K P + +L + K + A ++M + + V
Sbjct: 437 S--KHLFPPYQGAPLMKASLLKKHPELEGILNKLAGKITDAQMSQMNYQVKVQGKSASSV 494
Query: 273 GRTML 277
L
Sbjct: 495 AHAYL 499
>gi|168180293|ref|ZP_02614957.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Clostridium botulinum
NCTC 2916]
gi|182668717|gb|EDT80695.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Clostridium botulinum
NCTC 2916]
Length = 527
Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats.
Identities = 43/304 (14%), Positives = 96/304 (31%), Gaps = 35/304 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--L 61
I+ VC+ L + V +T+ + ++ K L
Sbjct: 237 IVGVCILLALVAPKIIGMGH--KKVVIGSKNFTEQIILGNILEELIHNKTDIDVETKLNL 294
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFI-----------------APYLEEGSIKLVA 104
V+F +LK GID+++ Y + + + E I+++
Sbjct: 295 GGTQVSFNALKAGGIDMYVEYTGTAYGNILNIKEPNRDKDTVYNRVKKDFKERFGIEVLN 354
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYG-IEPGNEGNQRILDMINNNK 163
Y +A + + + KE I G ++ +
Sbjct: 355 PMGFNNTYAMATTKEIAQKY--NLKTTSDLAKESSNMIAGPTIEFANREDGLIGLNKAYN 412
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+ KG + I+ NN + ++ + N+ L + F +
Sbjct: 413 VNFKGVKPIDG------GLRYTALVNNETQIIDAFTTDGLIEQFNLVLLED--DKRFFPD 464
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTHP 281
+V+ + L K P + +L + + + ++ + NK+D + V + L+
Sbjct: 465 YYAVPIVKEETLKKFPELREVLGKLDGRITDEKMRKLNYEVDVNKKDPKQVAKEFLQK-E 523
Query: 282 DLLK 285
+L+
Sbjct: 524 ELID 527
>gi|330807506|ref|YP_004351968.1| amino acid ABC transporter substrate-binding protein [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|327375614|gb|AEA66964.1| Putative amino acid ABC transporter, substrate-binding component
[Pseudomonas brassicacearum subsp. brassicacearum
NFM421]
Length = 300
Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats.
Identities = 41/303 (13%), Positives = 87/303 (28%), Gaps = 32/303 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K+ + + A +R +T+ +T+ L GY I
Sbjct: 1 MKKL--SLILGCVLLFAGFAQAAEKPLIRLGARVFTEQTLLAEITAQYLRSK-GYDAQIT 57
Query: 61 LL-AVPVTFRSLKNKGIDIFMGYWYPSLEKF---------------IAPYLEEGSIKLVA 104
+ + + +D+ Y SL + + + + +
Sbjct: 58 GGLGSNLARSAHETGQLDMLWEYTGVSLVAYNHVTEKLDSAQSYARVKELDAKKGLVWLT 117
Query: 105 ENLQGAKYMLAVNDVGFALG-----IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI 159
+ Y LA+ + I + + + + + + + M+
Sbjct: 118 PSKFSNTYALALPEKIARQYPQINSISQLNTVLQAEADDDHLVALDTEFANRSDGLAGMV 177
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
+L + + + RN L + + + L +
Sbjct: 178 EQYGMNLTRKNIRQMDAG----LVYTALRNGQVFAGLVYTTDGRLNAFKLKLLED--DKH 231
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
F + + VVR YLD P ++ LK + F A ++ + N + V L
Sbjct: 232 YFPDYTAAPVVRQAYLDAHPQLAEQLKPLAELFDDATMRQLNARVDVNHESPSTVAADFL 291
Query: 278 RTH 280
R H
Sbjct: 292 RQH 294
>gi|292489183|ref|YP_003532070.1| glycine betaine/L-proline ABC transporter periplasmic protein
[Erwinia amylovora CFBP1430]
gi|292900300|ref|YP_003539669.1| glycine betaine/L-proline ABC transporter substrate-binding protein
[Erwinia amylovora ATCC 49946]
gi|291200148|emb|CBJ47274.1| glycine betaine/L-proline ABC transporter, substrate-binding
protein [Erwinia amylovora ATCC 49946]
gi|291554617|emb|CBA22280.1| Glycine betaine/L-proline ABC transport system, periplasmic
component [Erwinia amylovora CFBP1430]
Length = 331
Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats.
Identities = 44/323 (13%), Positives = 94/323 (29%), Gaps = 44/323 (13%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKLLAVPVTFRSLKNK 74
+S A + V+ A + T+ T + S LE LGY + + V + S+
Sbjct: 19 VSAADLPGTGITVKPAQSTITEETFQTLLVSRALE-KLGYTVNDPSEVDYNVAYTSIAAG 77
Query: 75 GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD---- 130
W P + + +QGA ++ + +
Sbjct: 78 DTTFMANNWRPLHDDMYQAAGGDAKFYRQGAYVQGAAQGYLIDKKTADKYHITNIEQLKD 137
Query: 131 -----IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
+ + A + G PG + I I S + + A +
Sbjct: 138 PKLAKLFDTNDDGKADLTGCTPGWGCDDVITHQIKAYGLS-NTVTHNQGNYSAMIADTIT 196
Query: 186 DQRNNIPAVFLSWEPHP----INSDLNIHYLPGGEE-----------------ISGFGEA 224
++ P ++ +W P+ + ++ +L GF
Sbjct: 197 RYKDGKPVLYFTWTPYWVSDVLVPGRDVVWLQVPFSSMPGGQKNVDTKLANGANYGFPVN 256
Query: 225 SVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV---GRTMLRTHP 281
S++ V ++ K P ++L +K +A N + + + ++ H
Sbjct: 257 SMHIVANKEWAQKNPAAAKLFAEMKLPLADINAQNSRMHQGQSSEADINAHVNGWIKAHQ 316
Query: 282 DLLKNWLIGVTTFDGQDPSRQLE 304
W+ +D +
Sbjct: 317 AQFDGWV--------KDALAAAK 331
>gi|269121628|ref|YP_003309805.1| substrate-binding region of ABC-type glycine betaine transporter
[Sebaldella termitidis ATCC 33386]
gi|268615506|gb|ACZ09874.1| Substrate-binding region of ABC-type glycine betaine transport
system [Sebaldella termitidis ATCC 33386]
Length = 531
Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats.
Identities = 32/301 (10%), Positives = 78/301 (25%), Gaps = 36/301 (11%)
Query: 5 LAVCLFLTTFSISYARDA----DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
A L S + A + M S+++E+ K
Sbjct: 236 TAAAAILVFTIFSKVYGPKPGGADGKIITIATKPSAEQLILGEMASLLIEKNTKIHVEKK 295
Query: 61 L---LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIA----------------PYLEEGSIK 101
++ +D++ Y S + Y ++ + +
Sbjct: 296 FSIGGGTSNIHPAMVKGEVDMYPEYTGTSWLFVLKHEKALPKDEMYAQLKKEYEDKFNFE 355
Query: 102 LVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMIN 160
+ + L++ + + + K +G E E +
Sbjct: 356 WLGLLGFNNTFTLSMKREEAEKN--NIKTFSDLAKASNQYRFGAEFDFFEREDGYPGLKK 413
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISG 220
F K ++ + + V S+ + ++ L ++
Sbjct: 414 VYGFDFKKLVELDINLK------YKAMEGKEVDVINSFSTDSLIKKYDLVTLQDDKDYF- 466
Query: 221 FGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLR 278
+ V++ + L K P I L++ + + + ++ Q V R L
Sbjct: 467 -PSYNAGFVIKKETLKKYPEIKPLIEKLNGMLDDETMTNLNYQVEVENKNPQDVARKFLE 525
Query: 279 T 279
Sbjct: 526 E 526
>gi|125717820|ref|YP_001034953.1| choline ABC transporter permease [Streptococcus sanguinis SK36]
gi|125497737|gb|ABN44403.1| ABC-type choline transporter, membrane-spanning permease, putative
[Streptococcus sanguinis SK36]
Length = 506
Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats.
Identities = 32/303 (10%), Positives = 89/303 (29%), Gaps = 39/303 (12%)
Query: 3 KILAVCLFLTTFSISYARDAD-----SCTPVRFADTGWTDIAATTAMTSVILEEILG--Y 55
+ + + + + + + A + M +++EE
Sbjct: 207 RTVFTAFAVLILGLGASYTPNLFPKQEKDHLVIAGKLGPEPEILMNMYKLLIEENTDMTV 266
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------E 97
+++LK IDI+ + + P + +
Sbjct: 267 TVKPNFGKTDFLYQALKKGDIDIYPEFTGTITGTLLQPAPKVSNNAEEVFEAARDGIKKQ 326
Query: 98 GSIKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
++ L+ Y +AV +K+ D+ + +L
Sbjct: 327 DNLVLLNHMAYQNTYAIAVPKSVAKEYNLKTISDLKTVQDKLK---------AGFTLEFN 377
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
D + NK + L + + ++ + ++ + ++ L
Sbjct: 378 DREDGNKGLQSLYGLNLNVATMEPALRYQAIQSGDIQITDAYSTDAELARYDLQVLED-- 435
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F +++++ L+K P + +L + K + + ++M + + + V R
Sbjct: 436 DKHLFPPYQGAPLLKAELLEKHPELEGILNKLAGKITESQMSQMNYQVGIEGKKAEDVAR 495
Query: 275 TML 277
L
Sbjct: 496 DYL 498
>gi|258646867|ref|ZP_05734336.1| choline transporter [Dialister invisus DSM 15470]
gi|260404306|gb|EEW97853.1| choline transporter [Dialister invisus DSM 15470]
Length = 503
Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats.
Identities = 30/301 (9%), Positives = 81/301 (26%), Gaps = 32/301 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
L +C F+ +S+ + + A + M ++ +K
Sbjct: 210 KSFLVLCFFILVLMLSFVSFSHRHDKLIIAGKLGPEPDILIHMYQELITRKTNIAVELKP 269
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------EGSIK 101
+ +LK ID++ + + + ++
Sbjct: 270 NFGKTAFLYEALKAGSIDLYPEFTGTITSSLLKEPPPLGHDARSVYEAARDEIKIQDNLA 329
Query: 102 LVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINN 161
+ Y +AV + + + +E N+ + +
Sbjct: 330 YLEPMSYQNTYAVAVPRSYAEANGLTSISDLHKVENRAIAGFTLE-FNDREDGNRGLASL 388
Query: 162 NKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
L+ + + + I + ++ + L + F
Sbjct: 389 YGLHLQVRTMEP-------ALRYQAISQGIIQITDAYSTDSELKQYGLVPLED--DKQLF 439
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++R + LD P + +L+ + + + M + NK+ + V L+
Sbjct: 440 PPYQGAPLMRQETLDAHPELKEILEQLSGRITEEEMSAMNYDVRVNKRKARDVAIEYLKN 499
Query: 280 H 280
+
Sbjct: 500 N 500
>gi|306835463|ref|ZP_07468480.1| amine ABC superfamily ATP binding cassette transporter
[Corynebacterium accolens ATCC 49726]
gi|304568629|gb|EFM44177.1| amine ABC superfamily ATP binding cassette transporter
[Corynebacterium accolens ATCC 49726]
Length = 318
Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats.
Identities = 38/316 (12%), Positives = 88/316 (27%), Gaps = 45/316 (14%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCT-------------------PVRFADTGWTDIAAT 41
M ++LA +TF ++ + + +T+
Sbjct: 1 MKRLLATLAAASTFFLAGCGLGTAGGLIPSGQLKGDLADIDLDGANISIGSKNFTEQVIL 60
Query: 42 TAMTSVILEEILGYKTN--IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFI-------- 91
+ +++LE G + T ++L+ +D Y + ++
Sbjct: 61 GKIGAILLESA-GANVKDLTNIPGSTSTRQALEVGDMDSMFEYTGTAWITYLGNADPVPG 119
Query: 92 --------APYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIY 143
++ + + Y LA+++ A K
Sbjct: 120 SQEQYEAVKEADKDHGLTWLPPAPMNNTYALAISEQSHAQYGLESLADIKGIPANEQTYC 179
Query: 144 GIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPI 203
N +L M+++ I + + +
Sbjct: 180 TDSEFLARNDGLLTMLDSYGVEQPPRDRIRIMDSG---AVYAALNKGECTFGSIFATDGR 236
Query: 204 NSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKL 261
LN+ L E F + ++ VVR++ L++ P I L + + E+
Sbjct: 237 IKSLNLTVLQDPE--LFFPKYNLAPVVRTEVLEEYPEIKDLFAPLSELLTDEKMQELNAR 294
Query: 262 ILNNKQDRQFVGRTML 277
+ + +D V + L
Sbjct: 295 VDVDGEDYTAVAQDFL 310
>gi|260682599|ref|YP_003213884.1| glycine betaine/carnitine/choline ABC transporter substrate-binding
protein [Clostridium difficile CD196]
gi|260686199|ref|YP_003217332.1| glycine betaine/carnitine/choline ABC transporter substrate-binding
protein [Clostridium difficile R20291]
gi|260208762|emb|CBA61625.1| glycine betaine/carnitine/choline ABC transporter,
substrate-binding protein [Clostridium difficile CD196]
gi|260212215|emb|CBE02912.1| glycine betaine/carnitine/choline ABC transporter,
substrate-binding protein [Clostridium difficile R20291]
Length = 517
Score = 136 bits (341), Expect = 5e-30, Method: Composition-based stats.
Identities = 37/275 (13%), Positives = 83/275 (30%), Gaps = 31/275 (11%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPVTFRSLKNKGIDIFMG 81
+ +T+ + + ++E+ K + L V F ++K+ +D+++
Sbjct: 247 KKDTITIGSKDYTEQLILGNVYAELVEKNTNLKVKKNLNLGGSSVAFNAIKSGELDMYVD 306
Query: 82 YWYPSLEKFIAPYLEE----------------GSIKLVAENLQGAKYMLAVNDVGFALG- 124
Y L + + + L+ Y LA+
Sbjct: 307 YTGTLLVNVMKHAPIKDADEAYNVVKDTMEKENQLTLLDPLGFNNTYTLAMMPETAEKYG 366
Query: 125 IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
I + D+ KY KE ++ + + K + + S
Sbjct: 367 INTISDLTKYGKEFTFSPTL--EFENREDGLVGLSRDYGLKFKDVKAMNGSLR------Y 418
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
NN V ++ + N+ L + +VR D L K P + ++
Sbjct: 419 TALDNNESQVIDAFLTDGLIKKFNLKILEDDKNFFV--PYYAAPLVREDTLKKYPELEKV 476
Query: 245 LKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ + K + E+ + + + V + L
Sbjct: 477 MNMLSGKINEETMRELNYQVDELGKSPEEVAHSFL 511
>gi|153939784|ref|YP_001390974.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Clostridium botulinum
F str. Langeland]
gi|152935680|gb|ABS41178.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Clostridium botulinum
F str. Langeland]
gi|295319033|gb|ADF99410.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Clostridium botulinum
F str. 230613]
Length = 527
Score = 136 bits (341), Expect = 5e-30, Method: Composition-based stats.
Identities = 42/298 (14%), Positives = 93/298 (31%), Gaps = 34/298 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--L 61
I+ VC+ L + V +T+ + ++ K L
Sbjct: 237 IVGVCILLALVAPKIIGMGH--KKVVIGSKNFTEQIILGNILEELIHNKTDIDVETKLNL 294
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFI-----------------APYLEEGSIKLVA 104
V+F +LK GID+++ Y + + + E I+++
Sbjct: 295 GGTQVSFNALKAGGIDMYVEYTGTAYGNILNIKEPNRDKDTVYNRVKKDFKERFGIEVLN 354
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYG-IEPGNEGNQRILDMINNNK 163
Y +A + + + KE I G ++ +
Sbjct: 355 PMGFNNTYAMATTKEIAQKY--NLKTTSDLAKESSNMIAGPTIEFANREDGLIGLNKAYN 412
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+ KG + I+ NN + ++ + N+ L + F +
Sbjct: 413 VNFKGVKPIDG------GLRYTALVNNETQIIDAFTTDGLIEQFNLVLLED--DKRFFPD 464
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+V+ + L K P + +L + + + ++ + NK+D + V + L+
Sbjct: 465 YYAVPIVKEETLKKFPELREVLGKLDGRITDEKMRKLNYEVDVNKKDPKQVAKEFLQK 522
>gi|126726787|ref|ZP_01742627.1| hypothetical protein RB2150_17694 [Rhodobacterales bacterium
HTCC2150]
gi|126704116|gb|EBA03209.1| hypothetical protein RB2150_17694 [Rhodobacterales bacterium
HTCC2150]
Length = 319
Score = 136 bits (341), Expect = 5e-30, Method: Composition-based stats.
Identities = 45/319 (14%), Positives = 94/319 (29%), Gaps = 40/319 (12%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL 62
K++A L + +A V WT A + ++E +G +
Sbjct: 6 KLIAATLLTAVSAPVFA------ENVNIGVPSWTGAQAVANVLGAVVEMRMGGTVDYIPG 59
Query: 63 AVPVTFRSLK--NKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
F+++ ID+ W P+ + F Y++E ++ N V+
Sbjct: 60 NNATIFQAMDQGKGDIDVHPDVWLPNQQSFTQKYVDEAKTVTLSSNPYEGNQGFCVSKDF 119
Query: 121 ---------FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
LG + +++ PG + L
Sbjct: 120 GTANNITDIADLGRPDVAALMDSDGNGKGEMWIGAPGWASANVNEVKTRDYGL-LDFIEP 178
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG-------------EEI 218
I A E ++I+ F ++PH + ++ L ++
Sbjct: 179 IRAEESVKTARIKDSIAKGEGYAFYCYKPHAVWFMFDVEMLSEPTFDEAKYTMIQPSDDA 238
Query: 219 SGFGEASVYT---------VVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDR 269
+ ++SV T + + P I+ N + + + I N +D
Sbjct: 239 DWYEKSSVATKDALKNVQIAWSNSLEGRSPAIAEFFSNFALTADDVSGLAFEISANGRDA 298
Query: 270 QFVGRTMLRTHPDLLKNWL 288
V + + + D + L
Sbjct: 299 ADVAKEWVEANSDRVDAML 317
>gi|327459791|gb|EGF06131.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Streptococcus sanguinis
SK1057]
Length = 506
Score = 136 bits (341), Expect = 5e-30, Method: Composition-based stats.
Identities = 31/303 (10%), Positives = 91/303 (30%), Gaps = 39/303 (12%)
Query: 3 KILAVCLFLTTFSISYARDAD-----SCTPVRFADTGWTDIAATTAMTSVILEEILG--Y 55
+ + + + + + A + M +++EE
Sbjct: 207 RTVFTAFAVLILGLGASYTPSFLPKQEKDHLVIAGKLGAEPEILMNMYKLLIEENTDMTV 266
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------E 97
+++LK IDI+ + + P + +
Sbjct: 267 TVKPNFGKTDFLYQALKKGDIDIYPEFTGTITGTLLQPAPKVSNDAEEVFEAARDGIKKQ 326
Query: 98 GSIKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
++ L+ Y +AV +K+ D+ + +L A N+
Sbjct: 327 DNLVLLNHMAYQNTYAIAVPKSVAKEYNLKTISDLKAVQDKLKAGFTL--EFNDREDGNK 384
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ + +L + + + ++ + ++ + ++ L
Sbjct: 385 GLQSVYGLNLNVSTMEP-------ALRYQAIQSGDIQITDAYSTDAELARYDLQVLED-- 435
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F ++++++L+K P + +L + K + + ++M + + + V R
Sbjct: 436 DKHLFPPYQGAPLLKAEFLEKHPELEGVLNKLAGKITESQMSQMNYQVGIEGKKAEAVAR 495
Query: 275 TML 277
L
Sbjct: 496 DYL 498
>gi|254421796|ref|ZP_05035514.1| ABC transporter, QAT family, substrate-binding protein, putative
[Synechococcus sp. PCC 7335]
gi|196189285|gb|EDX84249.1| ABC transporter, QAT family, substrate-binding protein, putative
[Synechococcus sp. PCC 7335]
Length = 285
Score = 136 bits (341), Expect = 5e-30, Method: Composition-based stats.
Identities = 30/289 (10%), Positives = 79/289 (27%), Gaps = 30/289 (10%)
Query: 13 TFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-LAVPVTFRSL 71
I+ +R +T+ + ++L + G+ + K +++
Sbjct: 1 MTIITACTGGGGGPEIRVGSKDFTEQYVLGNLYEILL-DESGFDADYKPAGGSSENHQAI 59
Query: 72 KNKGIDIFMGYWYPS------------------LEKFIAPYLEEGSIKLVAENLQGAKYM 113
N IDI+ Y + Y + + ++ Y+
Sbjct: 60 VNGDIDIYPEYTGTALLTHLGMEFDSSMSADTVYSTVKDAYANDFELAVLEPTDFNNTYV 119
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
L + ++++ + G +G L + ++
Sbjct: 120 LVMTKPKAEE--LDIKNVSDLSTKGGDLTFGTTQEFTERDDGLPGLRETYGGFNFEEIVA 177
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+ V + + ++ L ++ + +VR
Sbjct: 178 LDPG----LLYSGIEEGEIDVTTGFGTDGQIAAYDLLVLEDDKKF--WPPYPAAPIVRQA 231
Query: 234 YLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+D+ P ++ LL + E+ + N ++ V R L +
Sbjct: 232 VVDEHPEVAELLNQLSATIDADTMQELNWEVSGNGREADEVAREFLEEN 280
>gi|227551217|ref|ZP_03981266.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Enterococcus faecium TX1330]
gi|257896160|ref|ZP_05675813.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecium Com12]
gi|227179685|gb|EEI60657.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Enterococcus faecium TX1330]
gi|257832725|gb|EEV59146.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecium Com12]
Length = 512
Score = 136 bits (341), Expect = 5e-30, Method: Composition-based stats.
Identities = 41/301 (13%), Positives = 88/301 (29%), Gaps = 21/301 (6%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
LA + L Y + A + M ++E+ + +K
Sbjct: 212 TLAAVVCLVGGVSLYQSALFKNETITIAGKLGAEPEILIQMYKELIEDNTKTEVELKPNF 271
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIA-------PYLEEGSIKLVAENLQGAKYML 114
F +L IDI+ + LE + L + AE L ++ +
Sbjct: 272 GKTSFLFNALDQGQIDIYPEFTGTVLESLVKVPEAMKSADLTKEKTYDEAEELLNKQFDM 331
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPG------NEGNQRILDMINNNKFSLKG 168
+ + + + E K +D + K +
Sbjct: 332 TLLKLMAYQNTYALAVKKSFADEHQLKKISDLAAVSNQIKAGFTLEFIDRSDGYKGIQEA 391
Query: 169 FRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
+ L +S + + + N + ++ + ++ L + +
Sbjct: 392 YGLNFSSVQSMEPSLRYQAINNGDVNIVDAYSTDSQLKEYDLVTLEDDQGLF--PAYQGA 449
Query: 228 TVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLK 285
++++D+ P I L + K + +M + K+ V RT L + LLK
Sbjct: 450 PLMKTDFAKDHPEIVEALNKLSGKITENQMIDMNYQVNVEKKKPAEVARTFL-ENEGLLK 508
Query: 286 N 286
Sbjct: 509 E 509
>gi|148984313|ref|ZP_01817608.1| choline transporter (glycine betaine transport system permease
protein) [Streptococcus pneumoniae SP3-BS71]
gi|147923602|gb|EDK74715.1| choline transporter (glycine betaine transport system permease
protein) [Streptococcus pneumoniae SP3-BS71]
gi|301800642|emb|CBW33285.1| ABC-type glycine betaine transport system protein [Streptococcus
pneumoniae OXC141]
Length = 506
Score = 136 bits (341), Expect = 5e-30, Method: Composition-based stats.
Identities = 39/303 (12%), Positives = 90/303 (29%), Gaps = 35/303 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDAD-SCTPVRFADTGWTDIAATTAMTSVILEEI--LGYKT 57
++ A+ L S S A A + A + M +++EE +
Sbjct: 209 IFSGFALVALLLGLSYSPALLAQKEKENLIIAGKIGPEPEILANMYKLLIEENTSMTATV 268
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------EGS 99
+ +LK IDI+ + E + P + +
Sbjct: 269 KPNFGTTSFLYEALKKGDIDIYPEFTGTVTESLLQPSPKVSHEPEQVYQVARDGIAKQDH 328
Query: 100 IKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ + Y +AV G+K+ D+ K + +L D
Sbjct: 329 LAYLKPMSYQNTYAVAVPKKIAQEYGLKTISDLKKVEGQLK---------AGFTLEFNDR 379
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ NK + L + + ++ + ++ ++ L +
Sbjct: 380 EDGNKGLQSMYGLNLNVATMQPALRYQAIQSGDIQITDAYSTDAELERYDLQVLED--DK 437
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F +++ L K P + R+L + K + +++ + + + V +
Sbjct: 438 QLFPPYQGAPLMKEALLKKHPELERVLNTLAGKITENQMSQLNYQVGVEGKSAEQVAKEF 497
Query: 277 LRT 279
L+
Sbjct: 498 LQE 500
>gi|330814339|ref|YP_004358578.1| substrate-binding region of ABC-type glycine betaine transport
system [Candidatus Pelagibacter sp. IMCC9063]
gi|327487434|gb|AEA81839.1| substrate-binding region of ABC-type glycine betaine transport
system [Candidatus Pelagibacter sp. IMCC9063]
Length = 317
Score = 136 bits (341), Expect = 5e-30, Method: Composition-based stats.
Identities = 52/320 (16%), Positives = 106/320 (33%), Gaps = 32/320 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIK 60
K L ++L+ F ++ A V+ A W + + LEE LGYK K
Sbjct: 1 MKTLKSIIYLSLFVLA-ACSGQDNKEVKMAKANWDTGYFQAEVYKMALEE-LGYKVTEPK 58
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ + + + +D+++ W+ + + ++A + G + L
Sbjct: 59 AIKPSIFYVAAAQGDLDLWVNGWFGTHDTYLAETKGKVKKVGYVMKKGGLQGYLVDKKTA 118
Query: 121 FALGIKSYQDIAKYKKELGAK------IYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
L IKS DI K+ K+ A + PG ++I K I+A
Sbjct: 119 DRLNIKSVLDIKKHAKQFDANNDGKADMVACPPGWGCEKQITKHFAELKLGE-FINPIQA 177
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDL----NIHYLPGGEEISG---------- 220
AS + +N +F +W P+ ++ ++ +
Sbjct: 178 EYSASMADALARYKNGKSVLFYTWTPNWTVGAFKLGTDVVWIEVPYSKTKVTEVANATKP 237
Query: 221 -----FGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV--- 272
FG + +L K P + +LLK + + ++ + V
Sbjct: 238 SINLGFGADDIRPAANVAFLKKNPKVEKLLKVASIPLTDIAAQNMQMNKGEKSERQVKDH 297
Query: 273 GRTMLRTHPDLLKNWLIGVT 292
+ ++ + +W+
Sbjct: 298 AKAWVKINQKTFDSWIAAAK 317
>gi|312173342|emb|CBX81597.1| Glycine betaine/L-proline ABC transport system, periplasmic
component [Erwinia amylovora ATCC BAA-2158]
Length = 331
Score = 136 bits (341), Expect = 5e-30, Method: Composition-based stats.
Identities = 44/323 (13%), Positives = 94/323 (29%), Gaps = 44/323 (13%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKLLAVPVTFRSLKNK 74
+S A + V+ A + T+ T + S LE LGY + + V + S+
Sbjct: 19 VSAADLPGTGITVKPAQSTITEETFQTLLVSRALE-KLGYTVNDPSEVDYNVAYTSIAAG 77
Query: 75 GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD---- 130
W P + + +QGA ++ + +
Sbjct: 78 DTTFMANNWRPLHDDMYQAAGGDAKFYRQGAYVQGAAQGYLIDKKTADKYHITNIEQLKD 137
Query: 131 -----IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
+ + A + G PG + I I S + + A +
Sbjct: 138 PKLAKLFDTNDDGKADLTGCTPGWGCDDVITHQIKAYGLS-NTVTHNQGNYSAMIADTIT 196
Query: 186 DQRNNIPAVFLSWEPHP----INSDLNIHYLPGGEE-----------------ISGFGEA 224
++ P ++ +W P+ + ++ +L GF
Sbjct: 197 RYKDGKPVLYFTWTPYWVSDVLVPGRDVVWLQVPFSSMPGGQKNVDTKLANGANYGFPVN 256
Query: 225 SVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV---GRTMLRTHP 281
S++ V ++ K P ++L +K +A N + + + ++ H
Sbjct: 257 SMHIVANKEWAQKNPAAAKLFAEMKLPLADINAQNSRMHQGQSSEADINAHVNGWIKAHQ 316
Query: 282 DLLKNWLIGVTTFDGQDPSRQLE 304
W+ +D +
Sbjct: 317 AQFDGWV--------KDALAAAK 331
>gi|315223172|ref|ZP_07865033.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Streptococcus anginosus
F0211]
gi|315187604|gb|EFU21358.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Streptococcus anginosus
F0211]
Length = 510
Score = 136 bits (341), Expect = 5e-30, Method: Composition-based stats.
Identities = 36/297 (12%), Positives = 80/297 (26%), Gaps = 31/297 (10%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
+ + + L I++ + V+ A T+ M ++EE K +
Sbjct: 218 VFSSIVLLMAGIIAFLQMNPMGGTVKIATKPQTENYILGEMQKQVIEEYTNLKVKMTKGV 277
Query: 62 -LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP---------------YLEEGSIKLVAE 105
++ DI+ Y E + Y ++ + V
Sbjct: 278 GGGTANIHPAMVKGEFDIYAEYTGTIWEVILKKSGSYDESQFKTLESQYRKKYQLAWVNT 337
Query: 106 NLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKF 164
Y LAV + + + K +G E + +
Sbjct: 338 FGFNNTYGLAVRKDVAEKY--NIKTFSDLAKVSPNLTFGAEYDFFGREDGFARLQSTYGM 395
Query: 165 SLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEA 224
++ + ++ + N+ L ++ +
Sbjct: 396 KF------KSQVDMDSGLKYQAIKSGKVDAIDIFTTDGQLYGANLVVLKDDKK--IYPSY 447
Query: 225 SVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
TVVR L K + + L + + + E+ + N+K++ V L
Sbjct: 448 QAGTVVREATLKKYQQLKKALAKLDGILTDSKMAELNHKVENDKEEPAKVAHDYLVE 504
>gi|227502864|ref|ZP_03932913.1| glycine betaine ABC superfamily ATP binding cassette transporter
[Corynebacterium accolens ATCC 49725]
gi|227076594|gb|EEI14557.1| glycine betaine ABC superfamily ATP binding cassette transporter
[Corynebacterium accolens ATCC 49725]
Length = 318
Score = 136 bits (341), Expect = 5e-30, Method: Composition-based stats.
Identities = 37/316 (11%), Positives = 88/316 (27%), Gaps = 45/316 (14%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCT-------------------PVRFADTGWTDIAAT 41
M ++LA +TF ++ + + +T+
Sbjct: 1 MKRLLATLAAASTFFLAGCGLGTAGGLIPSGQLKGDLADIDLDGANISIGSKNFTEQVIL 60
Query: 42 TAMTSVILEEILGYKTN--IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFI-------- 91
+ +++LE G + ++L+ +D Y + ++
Sbjct: 61 GKIGAILLESA-GANVKDLTNIPGSTSARQALEVGDMDSMFEYTGTAWITYLGNADPVPG 119
Query: 92 --------APYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIY 143
++ + + Y LA+++ A K
Sbjct: 120 SQEQYEAVKEADKDHGLTWLPPAPMNNTYALAISEQSHAQYGLESLADIKGVPANEQTFC 179
Query: 144 GIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPI 203
N +L M+++ I + + + +
Sbjct: 180 TDSEFLARNDGLLTMLDSYGIEQPPRDRIRIMDSG---AVYAALNKGECTLGSIFATDGR 236
Query: 204 NSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKL 261
LN+ L E F + ++ VVR++ L++ P I L + + E+
Sbjct: 237 IKSLNLTVLEDPE--LFFPKYNLAPVVRTEVLEEYPEIKDLFAPLAKLLTDEKMQELNAR 294
Query: 262 ILNNKQDRQFVGRTML 277
+ + +D V + L
Sbjct: 295 VDVDGEDYTAVAQDFL 310
>gi|291485904|dbj|BAI86979.1| choline ABC transporter, choline-binding protein [Bacillus subtilis
subsp. natto BEST195]
Length = 306
Score = 136 bits (341), Expect = 5e-30, Method: Composition-based stats.
Identities = 36/308 (11%), Positives = 80/308 (25%), Gaps = 33/308 (10%)
Query: 1 MY----KILAVCLFLTTFSISYAR----DADSCTPVRFADTGWTDIAATTAMTSVILEEI 52
M K++ + T ++S A + ++ ++ +M ++E
Sbjct: 1 MKRKYLKLMIGLVLAATLTLSGCSLPGLSAAADQTIKIGAQSMSESEIIASMLGQLIEHH 60
Query: 53 LGYKTNIKLLAVPVTFRSLK--NKGIDIFMGYWY---------------PSLEKFIAPYL 95
KT + N IDI + P +
Sbjct: 61 TDLKTTTIKNLGSNAVQQQALMNGEIDIAATRYTGDALTGTLRMEPEKDPDKALALTQRE 120
Query: 96 EEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRI 155
+ L N G A + ++ KK G++ +
Sbjct: 121 FKKRYNLKWYNSYGFDNTYAFTVSRELADQYHLETVSDVKKWAPQLKLGVDNYWMKLKGN 180
Query: 156 LDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG 215
+ + + + ++ + L++ + L
Sbjct: 181 GYQDFTKTYGMTFG----GTYPMQIGLVYDAVKSGKMDIVLAYSTDGRIKSYGLKMLKD- 235
Query: 216 EEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVG 273
+ F VV L + P + ++K + K A E+ + N ++ V
Sbjct: 236 -DKQFFPPYDCSPVVPEKVLKEHPELEGIIKKMLGKIDTATMQELNYEVDGNLKEPSVVA 294
Query: 274 RTMLRTHP 281
+ L H
Sbjct: 295 KEYLEKHR 302
>gi|325479517|gb|EGC82613.1| ABC transporter, substrate-binding protein, QAT family
[Anaerococcus prevotii ACS-065-V-Col13]
Length = 505
Score = 136 bits (341), Expect = 5e-30, Method: Composition-based stats.
Identities = 36/301 (11%), Positives = 77/301 (25%), Gaps = 35/301 (11%)
Query: 2 YKILAVCLFLTTFSISYARDADSC--TPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
IL + + S + A + M ++E+ K +
Sbjct: 207 KTILISLILTVGIVLISLVPFKSKTNKKLVLAGKLGAEPEILINMYKELIEDETDIKVEL 266
Query: 60 KL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEE-------------------G 98
K + +LK IDI+ + + + +
Sbjct: 267 KPNFGKTSFLYEALKAGSIDIYPEFTGTITSSLLEEDIGKVSNDPEEVYNLARDKILAQD 326
Query: 99 SIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
S+ + + Y LAV + + K + + D
Sbjct: 327 SLVYLKPSKFQNTYALAVREDYASENNLEKISDLKNIEN--------DVNAGFTLEFNDR 378
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ N + L + + N + + N+ L +++
Sbjct: 379 EDGNLGLKSLYDLNFDVKTMEPALRYTAISNKSIDLTDVYSTDSQIIANNLKILEDDKKL 438
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
++R + L + P + +L + K S EM + + V R
Sbjct: 439 F--PPYQAAPLLREETLKEYPELEEVLGKLSGKISSEEMTEMNYAVDVEGKSANEVAREY 496
Query: 277 L 277
L
Sbjct: 497 L 497
>gi|324990838|gb|EGC22773.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Streptococcus sanguinis
SK353]
Length = 506
Score = 136 bits (341), Expect = 5e-30, Method: Composition-based stats.
Identities = 31/303 (10%), Positives = 90/303 (29%), Gaps = 39/303 (12%)
Query: 3 KILAVCLFLTTFSISYARDAD-----SCTPVRFADTGWTDIAATTAMTSVILEEILG--Y 55
+ + + + + + A + M +++EE
Sbjct: 207 RTVFTAFAVLILGLGASYSPSLLPKQEKDHLVIAGKLGPEPEILMNMYKLLIEENTDMTV 266
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------E 97
+++LK IDI+ + + P + +
Sbjct: 267 TVKPNFGKTDFLYQALKKGDIDIYPEFTGTITGTLLQPAPKVSNDAEEVFEAARDGIKKQ 326
Query: 98 GSIKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
++ L+ Y +AV +K+ D+ + +L A N+
Sbjct: 327 DNLVLLNHMAYQNTYAIAVPKSIAKEYNLKTISDLKAVQDKLKAGFTL--EFNDREDGNK 384
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ + +L + + + ++ + ++ + ++ L
Sbjct: 385 GLQSVYGLNLNVSTMEP-------ALRYQAIQSGDIQITDAYSTDAELARYDLQVLED-- 435
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F +++++ L+K P + +L + K + + ++M + + + V R
Sbjct: 436 DKHLFPPYQGAPLLKAELLEKHPELEGILNKLAGKITESQMSQMNYQVGIEGKKAEAVAR 495
Query: 275 TML 277
L
Sbjct: 496 DYL 498
>gi|253756053|ref|YP_003029193.1| glycine/betaine ABC transporter [Streptococcus suis BM407]
gi|251818517|emb|CAZ56347.1| ABC-type glycine betaine transport system protein [Streptococcus
suis BM407]
Length = 503
Score = 136 bits (341), Expect = 5e-30, Method: Composition-based stats.
Identities = 40/294 (13%), Positives = 87/294 (29%), Gaps = 20/294 (6%)
Query: 3 KILAVCLFLTTFSISYARDAD---SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
K + + L +T F++ + S + A + M +++E+ K I
Sbjct: 206 KTILLALLVTLFTVGASYVPMLNFSTKQLVIAGKLGAEPEILINMYKLLIEDQTDIKVEI 265
Query: 60 KL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
K + +LK+ IDI+ Y + + S + +L +
Sbjct: 266 KPNFGKTSFLYEALKSGSIDIYPEYTGTITSTLLKNSPMDLSTNPEEVYTYAKEAILEQD 325
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIE-----------PGNEGNQRILDMINNNKFSL 166
+ + + A E A+ GIE + D + N
Sbjct: 326 GLMYLAPMAFQNTYALAVTEDYAQKNGIEKISDLAKVQQTAVAGFSLEFNDREDGNIGLK 385
Query: 167 KGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV 226
+ L + + +N + ++ + L + F
Sbjct: 386 NLYNLQLNVKTMEPALRYEAIKNGDVQIVEAFSTDSKVVTYKLKILED--DKQLFPPYQG 443
Query: 227 YTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
++ + L+K P + + L + S +M + + + V R L
Sbjct: 444 APLLSKETLEKYPELEQALGVLAGNISTEEMTQMNYAVDMEGKSAEQVAREYLE 497
>gi|315223567|ref|ZP_07865422.1| glycine betaine ABC superfamily ATP binding cassette transporter,
membrane protein [Capnocytophaga ochracea F0287]
gi|314946483|gb|EFS98477.1| glycine betaine ABC superfamily ATP binding cassette transporter,
membrane protein [Capnocytophaga ochracea F0287]
Length = 513
Score = 136 bits (341), Expect = 5e-30, Method: Composition-based stats.
Identities = 32/296 (10%), Positives = 76/296 (25%), Gaps = 31/296 (10%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL- 61
K++ + + ++ + + T+ M S+++E+ G +
Sbjct: 218 KLVGIGILALLITLFFVLSPKKTKDIHITTKPMTESYLLGQMLSLLIEQDTGLSVRLTNG 277
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP---------------YLEEGSIKLVA 104
++ D++ Y + E + Y ++ ++
Sbjct: 278 VGGGTSNIHPAIARGEFDMYPEYTGTAWEAVLKRKDPYNENKFADLETAYKKQYGLEWAN 337
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNK 163
Y LAV+ + K I+G E E +
Sbjct: 338 LYGFNNTYSLAVSKEMAQKY--QLKTFTDLAKVSERLIFGAEYDFFEREDGYKQLQEVYG 395
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+ R+ + + S + L +
Sbjct: 396 MHFGKV------IDMDIGLKYQAMRDKKIDAMVVFTTDGQLSVSEVVVLQDDRN--MYPS 447
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
TVVR++ L P + L + + L+ ++ + V + L
Sbjct: 448 YKAGTVVRTELLTTYPTLRTTLAKLNQLIDNTTMAHLNFLVETERKRPEEVAKNYL 503
>gi|320007369|gb|ADW02219.1| Substrate-binding region of ABC-type glycine betaine transport
system [Streptomyces flavogriseus ATCC 33331]
Length = 327
Score = 136 bits (341), Expect = 6e-30, Method: Composition-based stats.
Identities = 43/292 (14%), Positives = 99/292 (33%), Gaps = 18/292 (6%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKG 75
S V + W A A+ ILE+ LGY+ ++ + +L
Sbjct: 37 ASPFAAPADIRTVTLSVQSWVGAQANVAVAQKILEDELGYRVDLVQTDEVPAWDALSQGR 96
Query: 76 IDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA--LGIKSYQDIAK 133
+D + W ++ + ++ +I + V + ++++ +
Sbjct: 97 VDAILEDWGHPDQEQLYVKDKK-TIVPGGDLGVTGHIGWYVPKYWADEHPDVTDWKNLDR 155
Query: 134 YKKELGAKIYGIEPG---NEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
Y EL G + + D L + SE A +Q+++ +
Sbjct: 156 YADELRTAESGDKGQLMDGSPSYVTNDKALVKNLDLDYKVVFAGSEAAQITQMQQFAKEK 215
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEE------------ISGFGEASVYTVVRSDYLDKC 238
P + ++P + +++ + + E + + + +D+ +
Sbjct: 216 KPFLSYWYQPQWLFNEVPMVEVKLPEYSDACAAKDPADIDCAYPTTPLQKYLNADFSKRG 275
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIG 290
+ + LK ++S +NE+ +LI + + + HP K WL G
Sbjct: 276 GDAAAFLKKFRWSEKDQNEVSELIASERLSPDEAAGRWIEEHPQTWKRWLRG 327
>gi|157694458|ref|YP_001488920.1| glycine betaine/L-proline ABC transporter binding protein [Bacillus
pumilus SAFR-032]
gi|157683216|gb|ABV64360.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Bacillus pumilus SAFR-032]
Length = 505
Score = 136 bits (341), Expect = 6e-30, Method: Composition-based stats.
Identities = 32/301 (10%), Positives = 80/301 (26%), Gaps = 36/301 (11%)
Query: 2 YKILAVCLFLTTFSISYARDAD----SCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
K + + + + ++ +M +++E+ +
Sbjct: 207 KKTVISVTVFAVIAGAIVAGPSLFQQEKKEITIGGKLGSEPEILISMYKLLIEQDTDIQV 266
Query: 58 NIKL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP-----------------YLEEG 98
N+K F++L++ IDI+ + + +F+
Sbjct: 267 NLKPGLGKTSFVFQALRSGDIDIYPEFTGTVISEFLKQTAKSTDKEKVYEQARRGLESSF 326
Query: 99 SIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
++L+ Y LAV S K D
Sbjct: 327 QLRLLEPMAYNNTYALAVPQSLADQYDVSNISDLGKIKNRIK--------AGFTLEFSDR 378
Query: 159 INNNKFSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
+ + K ++ + ++ R + + ++ + L +
Sbjct: 379 QDGYRGIQKTYQFSFDDVVTMEPKLRYRAIQKGDINLVDAYSTDSELRQYKLKVLND--D 436
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
F ++R + L + P I L + + + EM + +D V +
Sbjct: 437 QHVFPPYQGAPLLRQETLTEYPEIETSLNKLGCQITDDEMREMNYEVNVQGKDAFQVAKA 496
Query: 276 M 276
Sbjct: 497 Y 497
>gi|254974526|ref|ZP_05270998.1| glycine betaine/carnitine/choline ABC transporter,
substrate-binding protein [Clostridium difficile
QCD-66c26]
gi|255091914|ref|ZP_05321392.1| glycine betaine/carnitine/choline ABC transporter,
substrate-binding protein [Clostridium difficile CIP
107932]
gi|255313649|ref|ZP_05355232.1| glycine betaine/carnitine/choline ABC transporter,
substrate-binding protein [Clostridium difficile
QCD-76w55]
gi|255516333|ref|ZP_05384009.1| glycine betaine/carnitine/choline ABC transporter,
substrate-binding protein [Clostridium difficile
QCD-97b34]
gi|255649433|ref|ZP_05396335.1| glycine betaine/carnitine/choline ABC transporter,
substrate-binding protein [Clostridium difficile
QCD-37x79]
Length = 515
Score = 136 bits (341), Expect = 6e-30, Method: Composition-based stats.
Identities = 37/275 (13%), Positives = 83/275 (30%), Gaps = 31/275 (11%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPVTFRSLKNKGIDIFMG 81
+ +T+ + + ++E+ K + L V F ++K+ +D+++
Sbjct: 245 KKDTITIGSKDYTEQLILGNVYAELVEKNTNLKVKKNLNLGGSSVAFNAIKSGELDMYVD 304
Query: 82 YWYPSLEKFIAPYLEE----------------GSIKLVAENLQGAKYMLAVNDVGFALG- 124
Y L + + + L+ Y LA+
Sbjct: 305 YTGTLLVNVMKHAPIKDADEAYNVVKDTMEKENQLTLLDPLGFNNTYTLAMMPETAEKYG 364
Query: 125 IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
I + D+ KY KE ++ + + K + + S
Sbjct: 365 INTISDLTKYGKEFTFSPTL--EFENREDGLVGLSRDYGLKFKDVKAMNGSLR------Y 416
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
NN V ++ + N+ L + +VR D L K P + ++
Sbjct: 417 TALDNNESQVIDAFLTDGLIKKFNLKILEDDKNFFV--PYYAAPLVREDTLKKYPELEKV 474
Query: 245 LKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ + K + E+ + + + V + L
Sbjct: 475 MNMLSGKINEETMRELNYQVDELGKSPEEVAHSFL 509
>gi|317489317|ref|ZP_07947831.1| binding-protein-dependent transport system inner membrane component
[Eggerthella sp. 1_3_56FAA]
gi|325829726|ref|ZP_08163189.1| ABC transporter, substrate-binding protein, QAT family [Eggerthella
sp. HGA1]
gi|316911562|gb|EFV33157.1| binding-protein-dependent transport system inner membrane component
[Eggerthella sp. 1_3_56FAA]
gi|325488221|gb|EGC90653.1| ABC transporter, substrate-binding protein, QAT family [Eggerthella
sp. HGA1]
Length = 528
Score = 136 bits (341), Expect = 6e-30, Method: Composition-based stats.
Identities = 35/288 (12%), Positives = 71/288 (24%), Gaps = 31/288 (10%)
Query: 13 TFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL---LAVPVTFR 69
+ ++A V A T+ M + ++E K +
Sbjct: 247 GGAFAFANRGGGENVVNIATKPMTEQYILGEMLNTLIEHDTDLKVELTQGVGGGTSNIEP 306
Query: 70 SLKNKGIDIFMGYWYPSLEKFIA---------------PYLEEGSIKLVAENLQGAKYML 114
++ D++ Y + Y + + V Y L
Sbjct: 307 GMEKGDFDLYPEYTGTGWNAVLKHDDTYDESMFDTMQQEYESQLGLTWVGMYGFNNTYGL 366
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEP-GNEGNQRILDMINNNKFSLKGFRLIE 173
AV+ + + + G G EP + +
Sbjct: 367 AVSRDAAERY--NLRTYSDLAGAAGGLTLGAEPDFFDRQDGYPGLQQAYGMDFG------ 418
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+ S + + +D + L + + VVR D
Sbjct: 419 TTRDMDISLKYQALFEGQVDAIVVSTTDGQVADERLVVLED--DRHFYPSYLCGNVVRQD 476
Query: 234 YLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
L+K P + L ++ + A M + Q+ + V L
Sbjct: 477 ALEKHPELRGELLKLQGAITDADMARMNNEVETQGQEPKAVADAFLAE 524
>gi|21226400|ref|NP_632322.1| glycine betaine-binding protein [Methanosarcina mazei Go1]
gi|20904657|gb|AAM29994.1| Glycine betaine-binding protein [Methanosarcina mazei Go1]
Length = 306
Score = 136 bits (341), Expect = 6e-30, Method: Composition-based stats.
Identities = 38/307 (12%), Positives = 79/307 (25%), Gaps = 39/307 (12%)
Query: 1 MY-KILAVCLFLTTFSISYARDADS--------CTPVRFADTGWTDIAATTAMTSVILEE 51
M + + V L + S + + V + + T M S++LEE
Sbjct: 1 MKFRFIIVLLLAASLFFSGCAENNQNRENNTQPAEKVVIGTKLFQESYITAHMVSLLLEE 60
Query: 52 ILGYKTNIKL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIK-------- 101
GY T +K V + +LK I ++ Y + + E
Sbjct: 61 Q-GYDTEVKENLGGTLVNYEALKKGDIQSYIEYTGTIYSQILKKPPLEEWDPEVVYEESE 119
Query: 102 --------LVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYG-IEPGNEGN 152
+V + G + A+ + I+ + G
Sbjct: 120 KGMLESDGVVIASSLGFEDAYAIAVDREWAENQGINTISDLEPYASEMSVGTDPEFATRE 179
Query: 153 QRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYL 212
+ + FS K + + + NN ++ N + L
Sbjct: 180 DGLPQLARVYGFSFKNYN------SMAPGIMYEAMENNEVDAISAYTTDTRNDLYGLKVL 233
Query: 213 PGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQ 270
+ +V + + P L + + + + +
Sbjct: 234 ED--DKHALPPYDAVVLVTESFAEDNPEAMEALSQLNGRIDQDTMRRLNGEYDIEGRSAK 291
Query: 271 FVGRTML 277
+ R L
Sbjct: 292 DIARDYL 298
>gi|28895903|ref|NP_802253.1| ABC transporter ATP-binding protein [Streptococcus pyogenes SSI-1]
gi|28811153|dbj|BAC64086.1| putative ABC transporter (ATP-binding protein) [Streptococcus
pyogenes SSI-1]
Length = 520
Score = 136 bits (341), Expect = 6e-30, Method: Composition-based stats.
Identities = 32/297 (10%), Positives = 85/297 (28%), Gaps = 34/297 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--L 61
I + L + ++ ++ + V A + + ++E+ +K
Sbjct: 227 ITLLALLASYTPMALSQFSKGKDTVVIAGKLGAEPDILINLYKELIEDQSDISVELKSNF 286
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------EGSIKLV 103
+ +LK+ IDI+ + + + + L+
Sbjct: 287 GKTSFLYEALKSGDIDIYPEFTGTITSSLLRDKPPLSNDPKQVYEDAKKGIAKQDKLTLL 346
Query: 104 AENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
Y +A+ + I++ D+ + L D +
Sbjct: 347 KPFAYQNTYAVAMPEKLAKEYQIETISDLKAHADTLK---------AGFTLEFKDRTDGY 397
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
K + L + + + ++ V ++ + ++ L + F
Sbjct: 398 KGMQSQYGLQLSVATMEPALRYQAIQSGDIQVTDAYSTDAEITKYHLKVLKD--DKQLFP 455
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
++++ L K P + +L + K + +M + D + R L
Sbjct: 456 PYQGAPLMKTSLLTKHPELKGILNQLAGKITEKEMQDMNYEVSVKGADANKIARDYL 512
>gi|284009254|emb|CBA76365.1| glycine betaine/L-proline ABC transporter, substrate-binding
protein [Arsenophonus nasoniae]
Length = 328
Score = 136 bits (341), Expect = 6e-30, Method: Composition-based stats.
Identities = 45/325 (13%), Positives = 98/325 (30%), Gaps = 38/325 (11%)
Query: 1 MYKILAVCLFLTTFS---ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M KI+ + LT +S ++ + + T + + LE LGY+
Sbjct: 1 MRKIVFLAAALTILISIKLSATELPGKGIKIQPIQSTIAEETFQTLIVNKALE-KLGYQI 59
Query: 58 N-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ + V + S+ W P + + + A +
Sbjct: 60 LPTQEVDYTVAYASIAAGDATFMAVNWQPLHNAQYEAVGGDNRLYRKGIYISNAVQGYLI 119
Query: 117 NDVGFALGIKSY---------QDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
+ + + A + G PG I + +N +
Sbjct: 120 DKKTADKYHITNLAQFKEANIAKLFDTNGNGKADLTGCNPGWGCEAAINNHLNAYHLN-T 178
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGE------- 216
+ + A + I + P + +W P+ +N+ ++ +L
Sbjct: 179 TVEHNQGNYAAMIADIITRYKEGKPIFYYTWAPYWVNAVLKPGKDVIWLQVPFSSLPNND 238
Query: 217 ---------EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNN-- 265
+ GF +S++ V + +K P ++L +K + N + N
Sbjct: 239 KSDTTLANGKNYGFPPSSMHIVANKIWAEKNPAAAKLFAIMKIPITDINAQNFRMHNGEA 298
Query: 266 -KQDRQFVGRTMLRTHPDLLKNWLI 289
+ D + R ++ H L W+
Sbjct: 299 SQADIERHARGWIKAHQQLFNTWIK 323
>gi|332366539|gb|EGJ44285.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Streptococcus sanguinis
SK1059]
Length = 506
Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats.
Identities = 31/303 (10%), Positives = 90/303 (29%), Gaps = 39/303 (12%)
Query: 3 KILAVCLFLTTFSISYARDAD-----SCTPVRFADTGWTDIAATTAMTSVILEEILG--Y 55
+ + + + + + A + M +++EE
Sbjct: 207 RTVFTAFAVLILGLGASYSPSLIPKQEKDHLVIAGKLGPEPEILMNMYKLLIEENTDMTV 266
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------E 97
+++LK IDI+ + + P + +
Sbjct: 267 TVKPNFGKTDFLYQALKKGDIDIYPEFTGTITGTLLQPAPKVSNDAEEVFEAARDGIKKQ 326
Query: 98 GSIKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
++ L+ Y +AV +K+ D+ + +L A N+
Sbjct: 327 DNLVLLNHMAYQNTYAIAVPKSVAKEYNLKTISDLKAVQDKLKAGFTL--EFNDREDGNK 384
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ + +L + + + ++ + ++ + ++ L
Sbjct: 385 GLQSVYGLNLNVSTMEP-------ALRYQAIQSGDIQITDAYSTDAELARYDLQVLED-- 435
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F +++++ L+K P + +L + K + + ++M + + + V R
Sbjct: 436 DKHLFPPYQGAPLLKAELLEKHPELEGVLNKLAGKITESQMSQMNYQVGIEGKKAEAVAR 495
Query: 275 TML 277
L
Sbjct: 496 DYL 498
>gi|330940564|gb|EGH43626.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. pisi str. 1704B]
Length = 266
Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats.
Identities = 39/275 (14%), Positives = 87/275 (31%), Gaps = 28/275 (10%)
Query: 51 EILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGA 110
+ G + +L I IF W + G + V + GA
Sbjct: 2 KGYGCTVDALPGNSIAMENALGTNDIQIFAEEWV-GRSEVWNKAAAAGKVVGVGAPIVGA 60
Query: 111 KYMLAVNDV-----------GFALGIKSYQDIAKYKKELGA-------KIYGIEPGNEGN 152
V A +KS D+A+Y + Y G
Sbjct: 61 VEGWYVPRYVIEGDAKRKLEAKAPNLKSISDLAQYSAVFKDQEEPGKGRFYNCPAGWTCE 120
Query: 153 QRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYL 212
+M+ + K + A + I + P + W P P+ +++ L
Sbjct: 121 LENSEMLKSYGLESKYTNFRPGTGPALDAAILSSYKRGEPILTYYWSPTPLMGQVDLVRL 180
Query: 213 PGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
+ + V + D+ P + +L+ + + L N+ + + + + +
Sbjct: 181 EE--KAGVNKTIDIKVGVSKVFHDEAPELVAILEKVNLPIDLLNQNLGRMAKERIESPKL 238
Query: 273 GRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ L+ HP++ W+ +D +++++ +
Sbjct: 239 AKIFLKEHPEVWHKWVS-------EDAAKKVDASL 266
>gi|329767733|ref|ZP_08259249.1| hypothetical protein HMPREF0428_00946 [Gemella haemolysans M341]
gi|328838834|gb|EGF88428.1| hypothetical protein HMPREF0428_00946 [Gemella haemolysans M341]
Length = 504
Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats.
Identities = 36/303 (11%), Positives = 85/303 (28%), Gaps = 36/303 (11%)
Query: 3 KILAVCLFLTTFSISYARDA---DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
K + L +++ + S + A + M +++E+ +
Sbjct: 206 KTILASLLAAVVALTISFLPIGKMSNDKLIIAGKIGAEPEILINMYKLLIEDETNIDVEV 265
Query: 60 KL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIA-------------------PYLEEG 98
K + +LK K IDI+ + + E+
Sbjct: 266 KPNFGKTSFLYEALKGKSIDIYPEFTGTVTTTLLKTPQTVASNDPDEVYEVAKNKIFEQD 325
Query: 99 SIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
++ + Y LAV + + K + + +E N+ + +
Sbjct: 326 NLVYLKPTKFQDTYALAVTEDFANKNKLNNISDIKLVENSSKVGFSLE-FNDREDGGIGL 384
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
N +L + + + N + + + L +
Sbjct: 385 KNLYHLNLN-------VKTMEIALKYQAISNGDVNIIDVFSTDSKIITNKLKLLND--DR 435
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F ++R + L K P + ++L + K + EM + + V +
Sbjct: 436 HLFPPYQGAPLLREETLKKHPELEKILNKLAGKITEKEMTEMNYKVDIEGKSAYDVAKEY 495
Query: 277 LRT 279
L+
Sbjct: 496 LQK 498
>gi|288933939|ref|YP_003437998.1| substrate-binding region of ABC-type glycine betaine transporter
[Klebsiella variicola At-22]
gi|288888668|gb|ADC56986.1| Substrate-binding region of ABC-type glycine betaine transport
system [Klebsiella variicola At-22]
Length = 332
Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats.
Identities = 44/321 (13%), Positives = 90/321 (28%), Gaps = 36/321 (11%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLA 63
L S A V+ A + ++ T + S LE LGY +
Sbjct: 9 TTAFATLIATSTFAADLPGKGITVKPAQSTISEETFQTLLVSRALE-KLGYTVEKPSEVD 67
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
V + S+ W P + A + + GA ++
Sbjct: 68 YNVAYTSIAAGDTTFIATNWQPLHDDMYAAAGGDNKFYRKGVYVSGAAQGYLIDKKTAEQ 127
Query: 124 GIKSYQD---------IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
+ D + + A + G PG I I+ S +
Sbjct: 128 YHITSIDQLKDPQIAKLFDTNNDGKADLTGCTPGWGCEAVINHQIDAYGLSKT-VTHNQG 186
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEE------------- 217
+ A + + P ++ +W P+ ++ ++ +L
Sbjct: 187 NYAAMMADTIARYKEGKPVLYYTWTPYWVSDVLKPGKDVVWLQVPFSSLPGEQKNIDTKL 246
Query: 218 ----ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV- 272
GF +++ V + +K P + L +K +A N ++ +
Sbjct: 247 ANGANYGFPVNTMHIVANKTWAEKNPAAATLFSVMKLPIADINAENAMMHEGHASEADIN 306
Query: 273 --GRTMLRTHPDLLKNWLIGV 291
++ H L +W+
Sbjct: 307 GHVDGWIKAHQPLFDSWVKAA 327
>gi|226314654|ref|YP_002774550.1| glycine betaine ABC transporter substrate binding protein precursor
[Brevibacillus brevis NBRC 100599]
gi|226097604|dbj|BAH46046.1| glycine betaine ABC transporter substrate binding protein precursor
[Brevibacillus brevis NBRC 100599]
Length = 308
Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats.
Identities = 29/162 (17%), Positives = 68/162 (41%), Gaps = 4/162 (2%)
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
++ KI GI+PG + + + + L+E S A + + + ++ P +
Sbjct: 48 AQVDHKIIGIDPGAGLMKATEKAMKDYDLKD--WELVEGSSAAMTAALTQAYKDKKPIIV 105
Query: 196 LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
W PH + S + YL + G + ++T+VR ++ P+ L ++ A
Sbjct: 106 TGWTPHWMFSKFQMKYLDDPKGTFGK-DEQIHTIVRKGLKEEQPSAYAFLDKFSWTPADM 164
Query: 256 NEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQ 297
++M I + + + ++ + + W+ G+ +G+
Sbjct: 165 EKVMLDI-ESGKKPEEAAAEWVKNNEATVNKWVEGIQPAEGK 205
Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 1/107 (0%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFM 80
+ A W A+T + +LE+ L YK + + + + N +D +
Sbjct: 200 QPAEGKKLTLAYVAWDSEIASTNVVKTVLEQKLKYKVELSQVEAGPMWVGVSNGDVDGMV 259
Query: 81 GYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKS 127
W P+ L + ++ + NLQG K LAV I+
Sbjct: 260 AAWLPTTHADYMEKLGK-DVEDLGPNLQGTKLGLAVPTYMEINSIED 305
>gi|206581107|ref|YP_002236981.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Klebsiella pneumoniae 342]
gi|206570165|gb|ACI11941.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Klebsiella pneumoniae 342]
Length = 332
Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats.
Identities = 45/321 (14%), Positives = 92/321 (28%), Gaps = 36/321 (11%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLA 63
A L S A V+ A + ++ T + S LE LGY +
Sbjct: 9 TAAFATLIATSTFAADLPGKGITVKPAQSTISEETFQTLLVSRALE-KLGYTVEKPSEVD 67
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
V + S+ W P + A + + GA ++
Sbjct: 68 YNVAYTSIAAGDTTFIATNWQPLHDDMYAAAGGDNKFYRKGVYVSGAAQGYLIDKKTAEQ 127
Query: 124 GIKSYQD---------IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
+ D + + A + G PG I I+ S +
Sbjct: 128 YHITSIDQLKDPQIAKLFDTNNDGKADLTGCTPGWGCEAVINHQIDAYGLSKT-VTHNQG 186
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEE------------- 217
+ +A + + P ++ +W P+ ++ ++ +L
Sbjct: 187 NYVAMMADTIARYKEGKPVLYYTWTPYWVSDVLKPGKDVVWLQVPFSSLPGEQKNIDTKL 246
Query: 218 ----ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV- 272
GF +++ V + +K P + L +K +A N ++ +
Sbjct: 247 ANGANYGFPVNTMHIVANKAWAEKNPAAATLFSVMKLPIADINAENAMMHEGHASEADIN 306
Query: 273 --GRTMLRTHPDLLKNWLIGV 291
++ H L +W+
Sbjct: 307 GHVDGWIKAHQPLFDSWVKAA 327
>gi|322385502|ref|ZP_08059146.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Streptococcus cristatus
ATCC 51100]
gi|321270240|gb|EFX53156.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Streptococcus cristatus
ATCC 51100]
Length = 506
Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats.
Identities = 31/303 (10%), Positives = 90/303 (29%), Gaps = 39/303 (12%)
Query: 3 KILAVCLFLTTFSISYARDAD-----SCTPVRFADTGWTDIAATTAMTSVILEEILG--Y 55
+ + + + + S + A + M +++EE
Sbjct: 207 RTVFAAFAVLILGLGASYTPSLLPKQSKDNLVIAGKLGPEPEILMNMYKLLIEENTDMTV 266
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------E 97
+++LK IDI+ + + + +
Sbjct: 267 TVKPNFGKTDFLYQALKKGDIDIYPEFTGTITGTLLQLAPKVSNDAEEVFEAARDGIKKQ 326
Query: 98 GSIKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
++ L+ Y +AV +K+ D+ + +L A N+
Sbjct: 327 DNLVLLNHMAYQNTYAIAVPKTIAKEYNLKTISDLKAVQDKLKAGFTL--EFNDREDGNK 384
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ + +L + + + ++ + ++ + ++ L
Sbjct: 385 GLQSVYGLNLNVSTMEP-------ALRYQAIQSGDIQITDAYSTDAELARYDLQVLED-- 435
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F +++++ L+K P + +L + K + + ++M + + + V R
Sbjct: 436 DKHLFPPYQGAPLLKAELLEKHPELEGILNKLAGKITESQMSQMNYQVGIEGKKAEAVAR 495
Query: 275 TML 277
L
Sbjct: 496 DYL 498
>gi|326772163|ref|ZP_08231448.1| glycine betaine/L-proline ABC transporter,periplasmic
substrate-binding protein [Actinomyces viscosus C505]
gi|326638296|gb|EGE39197.1| glycine betaine/L-proline ABC transporter,periplasmic
substrate-binding protein [Actinomyces viscosus C505]
Length = 291
Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats.
Identities = 53/287 (18%), Positives = 102/287 (35%), Gaps = 15/287 (5%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFA-DTGWTDIAATTAMTSVILEEILGYKTNIK 60
+ + L + R + +R W+D + T + LE+ GY+ +
Sbjct: 8 FTTVLASLMAGGALAACGRGSGGGKTLRLGFIPSWSDGLSMTHLVKTQLEKA-GYRIKLT 66
Query: 61 -LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
L + L +D++ W K + I+ + AK AV
Sbjct: 67 DLSEAGPLYAGLSQGAVDLYPSAWPDVTHKEYMDKYRKY-IEDLGTYYDAAKLTWAVPSY 125
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL-DMINNNKFSLKGFRLIEASELA 178
KS +DI + ++G KI GIEPG + D+I + + +S
Sbjct: 126 SSM---KSIEDIKSHASQIGNKIIGIEPGAGLTKVSQEDVIPAYGLGDM--KFLTSSTTG 180
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+++++ V W P N+ + L + G GE ++ + R +
Sbjct: 181 MLAELKKAVDAKREIVVTLWHPFWANTTYGMRDLKDPKGALGKGEG-LHFLGREGFAQDY 239
Query: 239 PNISRLLKNIKFSVALENEMMKLILN---NKQDRQFVGRTMLRTHPD 282
P I++ L +IK A + L++N ++ + +P
Sbjct: 240 PEIAKWLGSIKMDEATYGSLEDLVVNTYGEGRE-DEAAIAWAKKYPQ 285
>gi|332361875|gb|EGJ39678.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Streptococcus sanguinis
SK355]
Length = 508
Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats.
Identities = 32/303 (10%), Positives = 92/303 (30%), Gaps = 39/303 (12%)
Query: 3 KILAVCLFLTTFSISYARDAD-----SCTPVRFADTGWTDIAATTAMTSVILEEILG--Y 55
+ + + T + + + A + M +++EE
Sbjct: 207 RTVFTAFAVLTLGLGASYTPSLIPKQEKDHLVIAGKLGPEPEILMNMYKLLIEENTDMTV 266
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------E 97
+++LK IDI+ + + P + +
Sbjct: 267 TVKPNFGKTDFLYQALKKGDIDIYPEFTGTITGTLLQPAPKVSNDAEEVFEVARDGIKKQ 326
Query: 98 GSIKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
++ L+ + Y +AV +K+ D+ + +L A N+
Sbjct: 327 DNLVLLNQMAYQNTYAIAVPKSVAKEYNLKTISDLKAVEDKLKAGFTL--EFNDREDGNK 384
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ + +L + + + ++ + ++ + ++ L
Sbjct: 385 GLQSVYGLNLNVSTMEP-------ALRYQAIQSGDIQITDAYSTDAELARYDLQVLED-- 435
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F +++++ L+K P + +L + K + + ++M + + + V R
Sbjct: 436 DKHLFPPYQGAPLMKAELLEKHPELEGILNKLAGKITESQMSQMNYQVGIEGKKAEAVAR 495
Query: 275 TML 277
L
Sbjct: 496 DYL 498
>gi|332710781|ref|ZP_08430719.1| ABC-type proline/glycine betaine transport system, periplasmic
component [Lyngbya majuscula 3L]
gi|332350451|gb|EGJ30053.1| ABC-type proline/glycine betaine transport system, periplasmic
component [Lyngbya majuscula 3L]
Length = 349
Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats.
Identities = 51/339 (15%), Positives = 97/339 (28%), Gaps = 45/339 (13%)
Query: 1 MYK-----ILAVCLFLTTFSISYARDADS--CTPVRFADTGWTDIAATTAMTSVILEEIL 53
M + L + L S T VR A + W + T + ++ LE L
Sbjct: 10 MKRQVRQLTLGMTLIALLLGSVACESTSSVKKTKVRSAHSNWVEEQFQTQIVNIGLE-KL 68
Query: 54 GYKTN-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKY 112
GY+ K + PV + S+ N +D + S +F I+ V
Sbjct: 69 GYEIEEPKEITYPVIYVSVANGDLDYSTINYEISHLEFFKNAGGTKKIERVGVITPDVIQ 128
Query: 113 MLAVNDVGFALGIKSYQDIAKYKK---------ELGAKIYGIEPGNEGNQRILDMINNNK 163
++ + + K K A + G +PG I +
Sbjct: 129 GYQIDKKTAEKYNITNLEQFKDPKIAKLFDTDGNGKANLIGCDPGWFCEVIIDHHLKAYG 188
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINS----DLNIHYLPGGE--- 216
+ + + + ++ + PH I++ D +I +L
Sbjct: 189 LEDT-VEHTRGQYIVLLADLMTRYKQGESVIYYAQNPHWISTILKPDQDIIWLEVPFTSL 247
Query: 217 ----------------EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMK 260
+ GF V +L P R + ++ V N
Sbjct: 248 PESQKDLTEKDTSVDGKNLGFTVDRQRIVANKKFLAANPVAKRWFELVQIPVEDINVESL 307
Query: 261 LILNNKQDRQFV---GRTMLRTHPDLLKNWLIGVTTFDG 296
I + + + + + + +L NW+ G
Sbjct: 308 KIKEGESSPEDIRRHAKEWVEKNQELFDNWIEEAKKAGG 346
>gi|126667657|ref|ZP_01738626.1| probable ABC transporter periplasmic binding protein [Marinobacter
sp. ELB17]
gi|126627926|gb|EAZ98554.1| probable ABC transporter periplasmic binding protein [Marinobacter
sp. ELB17]
Length = 297
Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats.
Identities = 40/301 (13%), Positives = 79/301 (26%), Gaps = 28/301 (9%)
Query: 1 MYKIL-AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M K L T A S + +T+ T++TS L GY
Sbjct: 1 MKKSWYKSLTGLLTCLSFAAMTPASAEEIVVGGKNFTEQQLLTSITSQYLTAK-GYDVES 59
Query: 60 KLL-AVPVTFRSLKNKGIDIFMGYWYPS---------------LEKFIAPYLEEGSIKLV 103
+ V + +N ID++ Y + + + E + +
Sbjct: 60 RAGMGSAVVRSAQENGQIDVYWEYTGTALVVYNGVTEKLDREQTYERVKSLDAEKGLVWL 119
Query: 104 AENLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI-NN 161
+ Y LA+ IK+ D A+ + +
Sbjct: 120 NPSDANNTYALAMRRADAKKRNIKTLSDFAEVINSGTKLVLASNAEWYAREDGYRPFSKA 179
Query: 162 NKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
F L ++ + + L + + L
Sbjct: 180 YGFDLPRDQIKRMDSG----LTYTALKEELVDSALVFATDGRIPAFDFVVLKDDRGFF-- 233
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+ ++ V+R+D L P ++ L + + M + + R+ L
Sbjct: 234 PDYAITPVIRADTLAANPKLAEQLNALSGVIDNETMSAMNAQVDVERVSVAKAARSFLEK 293
Query: 280 H 280
H
Sbjct: 294 H 294
>gi|197294982|ref|YP_002153523.1| putative ABC transporter substrate-binding protein [Burkholderia
cenocepacia J2315]
gi|195944461|emb|CAR57063.1| putative ABC transporter substrate-binding protein [Burkholderia
cenocepacia J2315]
Length = 303
Score = 135 bits (340), Expect = 7e-30, Method: Composition-based stats.
Identities = 36/296 (12%), Positives = 79/296 (26%), Gaps = 30/296 (10%)
Query: 9 LFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL-AVPVT 67
L A + +T+ +TS L GY ++ +
Sbjct: 13 LCTVGALCVAASTPAFAAKLVLGAKNFTEQYVLAELTSQYLRSR-GYDVEVRAGLGSTLA 71
Query: 68 FRSLKNKGIDIFMGYWYPS---------------LEKFIAPYLEEGSIKLVAENLQGAKY 112
+L+N D+ Y + + + + + + + Y
Sbjct: 72 RSALENGQFDLMWDYTGTAALVYNKIQDKLSPEEMYRRVKALDVPRGLVWLDASPLNDTY 131
Query: 113 MLAVNDVGFALG----IKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFSLK 167
+ + + + K ++G++ + ++
Sbjct: 132 AIGLPSELAQATGIRTVSQLAEHLKNDPAAKHYVFGMDAEFANRPDGLKPLLAAYGMQFS 191
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
+L + + NN + L + I L + F +
Sbjct: 192 RAQLKQMDPG----LVYTALHNNQLKIGLVYTTDGRVKGFGIVPLED--DKHFFPPYNAT 245
Query: 228 TVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRTHP 281
VVR L+ P ++ L + M K + + + + V LRTHP
Sbjct: 246 PVVRKGTLESNPKLATQLNALSAALDNDAMQAMAKAVDLDGKSPRDVADAFLRTHP 301
>gi|307709712|ref|ZP_07646164.1| glycine betaine/carnitine/choline transport system permease
proteinopuCB [Streptococcus mitis SK564]
gi|307619610|gb|EFN98734.1| glycine betaine/carnitine/choline transport system permease
proteinopuCB [Streptococcus mitis SK564]
Length = 506
Score = 135 bits (340), Expect = 7e-30, Method: Composition-based stats.
Identities = 38/303 (12%), Positives = 89/303 (29%), Gaps = 35/303 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDAD-SCTPVRFADTGWTDIAATTAMTSVILEEI--LGYKT 57
++ A+ L S S A A + A + M +++EE +
Sbjct: 209 IFSGFALVTLLLGLSYSPALLAQKEKENLVIAGKLGPEPEILANMYKLLIEENTSMTATV 268
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------EGS 99
+ +LK IDI+ + E + P + +
Sbjct: 269 KPNFGKTSFLYEALKKGDIDIYPEFTGTVTESLLQPSPKVSHEPEQVYDVARDGIAKQDH 328
Query: 100 IKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ + Y +AV G+K+ D+ K + +L D
Sbjct: 329 LAYLKPMSYQNTYAVAVPKKIAQEYGLKTISDLKKVEGQLK---------AGFTLEFNDR 379
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ NK + L + + ++ + ++ ++ L +
Sbjct: 380 EDGNKGLQSMYGLNLNVATMEPALRYQAIQSGDIQITDAYSTDAELERYDLQVLED--DK 437
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F +++ L K P + +L + K + + +++ + + V +
Sbjct: 438 QLFPPYQGAPLMKEALLKKHPELETVLNKLAGKITESQMSQLNYQVSVEGKSAGQVAKEF 497
Query: 277 LRT 279
L+
Sbjct: 498 LQE 500
>gi|306519512|ref|ZP_07405859.1| glycine betaine/carnitine/choline ABC transporter,
substrate-binding protein [Clostridium difficile
QCD-32g58]
Length = 493
Score = 135 bits (340), Expect = 7e-30, Method: Composition-based stats.
Identities = 37/275 (13%), Positives = 83/275 (30%), Gaps = 31/275 (11%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPVTFRSLKNKGIDIFMG 81
+ +T+ + + ++E+ K + L V F ++K+ +D+++
Sbjct: 223 KKDTITIGSKDYTEQLILGNVYAELVEKNTNLKVKKNLNLGGSSVAFNAIKSGELDMYVD 282
Query: 82 YWYPSLEKFIAPYLEE----------------GSIKLVAENLQGAKYMLAVNDVGFALG- 124
Y L + + + L+ Y LA+
Sbjct: 283 YTGTLLVNVMKHAPIKDADEAYNVVKDTMEKENQLTLLDPLGFNNTYTLAMMPETAEKYG 342
Query: 125 IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
I + D+ KY KE ++ + + K + + S
Sbjct: 343 INTISDLTKYGKEFTFSPTL--EFENREDGLVGLSRDYGLKFKDVKAMNGSLR------Y 394
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
NN V ++ + N+ L + +VR D L K P + ++
Sbjct: 395 TALDNNESQVIDAFLTDGLIKKFNLKILEDDKNFFV--PYYAAPLVREDTLKKYPELEKV 452
Query: 245 LKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ + K + E+ + + + V + L
Sbjct: 453 MNMLSGKINEETMRELNYQVDELGKSPEEVAHSFL 487
>gi|255100013|ref|ZP_05328990.1| glycine betaine/carnitine/choline ABC transporter,
substrate-binding protein [Clostridium difficile
QCD-63q42]
gi|255305900|ref|ZP_05350072.1| glycine betaine/carnitine/choline ABC transporter,
substrate-binding protein [Clostridium difficile ATCC
43255]
Length = 515
Score = 135 bits (340), Expect = 7e-30, Method: Composition-based stats.
Identities = 37/275 (13%), Positives = 83/275 (30%), Gaps = 31/275 (11%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPVTFRSLKNKGIDIFMG 81
+ +T+ + + ++E+ K + L V F ++K+ +D+++
Sbjct: 245 KKDTITIGSKDYTEQLILGNVYAELVEKNTNLKVKKNLNLGGSSVAFNAIKSGELDMYVD 304
Query: 82 YWYPSLEKFIAPYLEE----------------GSIKLVAENLQGAKYMLAVNDVGFALG- 124
Y L + + + L+ Y LA+
Sbjct: 305 YTGTLLVNVMRHAPIKDADEAYNVVKDTMEKENQLTLLDPLGFNNTYTLAMMPETAEKYG 364
Query: 125 IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
I + D+ KY KE ++ + + K + + S
Sbjct: 365 INTISDLTKYGKEFTFSPTL--EFENREDGLVGLSRDYGLKFKDVKAMNGSLR------Y 416
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
NN V ++ + N+ L + +VR D L K P + ++
Sbjct: 417 TALDNNESQVIDAFLTDGLIKKFNLKILEDDKNFFV--PYYAAPLVREDTLKKYPELEKV 474
Query: 245 LKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ + K + E+ + + + V + L
Sbjct: 475 MNMLSGKINEETMRELNYQVDELGKSPEEVAHSFL 509
>gi|187779702|ref|ZP_02996175.1| hypothetical protein CLOSPO_03298 [Clostridium sporogenes ATCC
15579]
gi|187773327|gb|EDU37129.1| hypothetical protein CLOSPO_03298 [Clostridium sporogenes ATCC
15579]
Length = 527
Score = 135 bits (340), Expect = 7e-30, Method: Composition-based stats.
Identities = 36/277 (12%), Positives = 88/277 (31%), Gaps = 32/277 (11%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--LLAVPVTFRSLKNKGIDIFMGY 82
V +T+ + +++ K L V+F +LK GID+++ Y
Sbjct: 256 DKKVVIGSKNFTEQIILGNILEELIDNKTDINVETKLNLGGTQVSFNALKTGGIDMYVEY 315
Query: 83 WYPSLEKFI-----------------APYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
+ + + E+ I+++ Y++A
Sbjct: 316 TGTAYGNMLNIKKPNRDRQAVYNTVKKEFKEKFGIEVLKPIGFNNTYVMATTKEIAQKY- 374
Query: 126 KSYQDIAKYKKELGAKIYG-IEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
+ ++ + I G I+ + + K + I+
Sbjct: 375 -NLKNTSDLANVSSKMILGPTIEFANREDGIVGLNKAYDMNFKAVKPIDG------GLRY 427
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
+ NN + ++ + N+ L + F + +V+ + L K P + ++
Sbjct: 428 KALVNNETQIIDAFTTDGLIEQFNLVLLED--DKHFFPDYYAVPIVKEETLKKFPELRKV 485
Query: 245 LKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
L + + + + + NK+D + V + L+
Sbjct: 486 LGELDGRITDEKMRRLNYEVDVNKRDPKEVAKEFLQK 522
>gi|255654951|ref|ZP_05400360.1| glycine betaine/carnitine/choline ABC transporter,
substrate-binding protein [Clostridium difficile
QCD-23m63]
gi|296449698|ref|ZP_06891468.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, membrane protein [Clostridium difficile
NAP08]
gi|296877985|ref|ZP_06902004.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Clostridium difficile NAP07]
gi|296261422|gb|EFH08247.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, membrane protein [Clostridium difficile
NAP08]
gi|296431053|gb|EFH16881.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Clostridium difficile NAP07]
Length = 515
Score = 135 bits (340), Expect = 8e-30, Method: Composition-based stats.
Identities = 39/275 (14%), Positives = 84/275 (30%), Gaps = 31/275 (11%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGIDIFMG 81
+ +T+ + + ++E+ K N+ L V F ++K+ +D+++
Sbjct: 245 KKDTITIGSKDYTEQLILGNVYAELVEKNTNLKVNKNLNLGGSSVAFNAIKSGELDMYVD 304
Query: 82 YWYPSLEKFIAPYLEE----------------GSIKLVAENLQGAKYMLAVNDVGFALG- 124
Y L + + + L+ Y LA+
Sbjct: 305 YTGTLLVNVMRHTPIKDADEAYNVVKDTMEKENQLTLLDPLGFNNTYTLAMMPETAEKYG 364
Query: 125 IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
I + D+ KY KE ++ + + K + + S
Sbjct: 365 INTISDLTKYGKEFTFSPTL--EFENREDGLVGLSRDYGLKFKDVKAMNGSLR------Y 416
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
NN V ++ + N+ L + +VR D L K P + ++
Sbjct: 417 TALDNNESQVIDAFLTDGLIKKFNLKILEDDKNFFV--PYYAAPLVREDTLKKYPELEKV 474
Query: 245 LKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
L + K + E+ + + + V + L
Sbjct: 475 LNMLSGKINEETMRELNYQVDELGKSPEDVAHSFL 509
>gi|220909638|ref|YP_002484949.1| glycine betaine ABC transporter substrate binding protein
[Cyanothece sp. PCC 7425]
gi|219866249|gb|ACL46588.1| Substrate-binding region of ABC-type glycine betaine transport
system [Cyanothece sp. PCC 7425]
Length = 304
Score = 135 bits (340), Expect = 8e-30, Method: Composition-based stats.
Identities = 47/292 (16%), Positives = 86/292 (29%), Gaps = 30/292 (10%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--LLA 63
+ + L ++I+ + D +R +T+ M + +LE+ G K K L
Sbjct: 15 VLMMTLVGWTIACSGTPDQA-TIRVGSKDFTEQLILGEMYAQVLEQS-GLKVERKLNLGG 72
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIA----------------PYLEEGSIKLVAENL 107
PV SL N ID++ Y L + Y ++ ++ +
Sbjct: 73 TPVVQASLLNGEIDLYPEYTGTGLLTVLKLPAQPDPKTVYQTVAAAYQKQFNLIWLQPAP 132
Query: 108 QGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
L + IA + + I P + L I K
Sbjct: 133 MNNTQALVTTPAIAQQY--GLKTIADFVAKADQLILVGPPEFAVREDGLPGIRRVYGDFK 190
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
I ++ V + + + + L + + V
Sbjct: 191 LKNFISTDAGLR----YPALQSGQANVAVGFSTDGEIAADRLVILEDNKGLF--PPYQVA 244
Query: 228 TVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
VVR L+ P I L I + A ++ + K++ V R L
Sbjct: 245 PVVRQATLNAHPQIQTQLNAIAPHLTNATMQKLNDAVSGQKREPADVAREFL 296
>gi|306827362|ref|ZP_07460649.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, membrane protein [Streptococcus
pyogenes ATCC 10782]
gi|304430509|gb|EFM33531.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, membrane protein [Streptococcus
pyogenes ATCC 10782]
Length = 508
Score = 135 bits (340), Expect = 8e-30, Method: Composition-based stats.
Identities = 33/297 (11%), Positives = 84/297 (28%), Gaps = 34/297 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--L 61
I + L + + ++ + V A + + ++E+ +K
Sbjct: 215 ITFLVLLASYTPMVLSQFSKGKDTVVIAGKLGAEPDILINLYKELIEDQSDISVELKSNF 274
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------EGSIKLV 103
+ +LK+ IDI+ + + + + L+
Sbjct: 275 GKTSFLYEALKSGDIDIYPEFTGTITSSLLRDKPPLSNDPKQVYEDAKKGIAKQDKLTLL 334
Query: 104 AENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
Y +A+ + I++ D+ + L D +
Sbjct: 335 KPFAYQNTYAVAMPEKLAEEYQIETISDLKAHADTLK---------AGFTLEFKDRADGY 385
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
K + L + + + ++ V ++ + ++ L + F
Sbjct: 386 KGMQSQYGLQLSVATMEPALRYQAIQSGDIQVTDAYSTDAEITKYHLKVLKD--DKQLFP 443
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
++++ L K P + +L + K + +M + D V R L
Sbjct: 444 PYQGAPLMKASLLTKHPELKGILNQLAGKITEKEMQDMNYKVSVKGADANKVARDYL 500
>gi|81429306|ref|YP_396307.1| putative glycine/betaine/carnitine ABC transporter, substrate
binding lipoprotein precursor [Lactobacillus sakei
subsp. sakei 23K]
gi|78610949|emb|CAI56001.1| Putative glycine/betaine/carnitine ABC transporter, substrate
binding lipoprotein precursor [Lactobacillus sakei
subsp. sakei 23K]
Length = 301
Score = 135 bits (340), Expect = 8e-30, Method: Composition-based stats.
Identities = 32/165 (19%), Positives = 66/165 (40%), Gaps = 2/165 (1%)
Query: 132 AKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI 191
K ++ I GI+ G ++ + ++L +S A S + + +
Sbjct: 34 QKLGPQINYTITGIDAGAGIMASTQKALSTYHLEGQNWQLQTSSTAAMTSTLDKAIADKR 93
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFS 251
P V W+PH + + I +L + + G E + T+VR P +L ++
Sbjct: 94 PIVITGWQPHWMFTKYPIKFLKDPKNVFGQAE-HINTIVRKGLKKDMPEAYTILDRFHWT 152
Query: 252 VALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDG 296
A +++M + N+ D + + ++ +P + W GV G
Sbjct: 153 PAEMSKVMLQV-NDGVDPEKAAKDWIKANPKQVAKWTKGVKKVHG 196
Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWY 84
T ++ W A+T + + +L + GY+ I+ + + + S+ K D + W
Sbjct: 196 GTKIKVTYVAWDSEIASTNVVAEVLRQQ-GYEPTIQAMEIQPMWASVATKAADAQVAAWL 254
Query: 85 PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
P +G + + NL+GAK LAV
Sbjct: 255 PKTSGLYYK-DYQGKFEDLGPNLEGAKVGLAVPKYM 289
>gi|73663305|ref|YP_302086.1| glycine/betaine ABC transporter periplasmic protein [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
gi|72495820|dbj|BAE19141.1| putative periplasmic glycine betaine choline-binding protein of an
ABC-type transport system [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
Length = 505
Score = 135 bits (340), Expect = 8e-30, Method: Composition-based stats.
Identities = 40/304 (13%), Positives = 88/304 (28%), Gaps = 35/304 (11%)
Query: 2 YKILAVCLFLTTFSISYARDA---DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
K+L + + V A ++ + T M +++E+
Sbjct: 207 KKLLISLGVIVIILLLVIIAPMLGQKGDKVTLAGKLGSEPSVITNMYKILIEQDTEDTVE 266
Query: 59 IK--LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP-----------------YLEEGS 99
+K + F +LK+ ID ++ + L + ++
Sbjct: 267 VKDGMGKTSFLFNALKSDDIDGYLEFTGTVLGELTKEDLKSKKEAQVYQQAKSSLEDKFD 326
Query: 100 IKLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ ++ Y LAV IK+ D+ K ++ N+ +
Sbjct: 327 MTMLKPMKYNNTYALAVKRDFAEAHHIKTIGDLNKVSDQIKPGFTL--EFNDRGDGYPAV 384
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
L + +E + N + ++ + ++ L +
Sbjct: 385 KKAYDLDLGDVKTMEPKLR------YQAIENGDINLIDAYSTDAELKEYDMVVLED--DK 436
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F + + YL + P I + L + K S +M + +D V +
Sbjct: 437 HVFPPYQGAPMFKESYLKEHPEIKKPLNKLEGKISDEDMQQMNYDVTVKNKDPYQVAKDY 496
Query: 277 LRTH 280
L H
Sbjct: 497 LEKH 500
>gi|322373031|ref|ZP_08047567.1| choline transporter [Streptococcus sp. C150]
gi|321278073|gb|EFX55142.1| choline transporter [Streptococcus sp. C150]
Length = 506
Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats.
Identities = 32/303 (10%), Positives = 83/303 (27%), Gaps = 39/303 (12%)
Query: 3 KILAVCLFLTTFSISYARDAD-----SCTPVRFADTGWTDIAATTAMTSVILEEILG--Y 55
+ + + + + + A + M +++E+
Sbjct: 207 RTIFTVFAVMILGLGASYVPSLIPKPEKENLIIAGKLGPEPEILANMYKILIEKNTDMTV 266
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------E 97
+ +LK IDI+ + E + P + +
Sbjct: 267 TVKPNFGKTTFLYEALKKGDIDIYPEFTGTVTESLLKPAPQVNHDPEAVYQAARDGIKKQ 326
Query: 98 GSIKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
+ L+ Y +AV G+K+ D+ K + EL A N+
Sbjct: 327 DDLALLKPMAYENTYAVAVPKKIAQEYGLKTISDLKKVEGELKAGFTL--EFNDRQDGNK 384
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ L+ + + + ++ + ++ + ++ L
Sbjct: 385 GLQKVYGLDLQVSTMEP-------ALRYQAIQSGEIQITDAYSTDAELARYDLVVLED-- 435
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F +++ L K P + +L + + ++M + + V
Sbjct: 436 DKQLFPPYQGAPLMKEALLKKHPELEGILNKLAGNITEKQMSQMNYQVGVEGKPAAQVAH 495
Query: 275 TML 277
L
Sbjct: 496 DFL 498
>gi|253576982|ref|ZP_04854305.1| glycine betaine ABC transporter [Paenibacillus sp. oral taxon 786
str. D14]
gi|251843592|gb|EES71617.1| glycine betaine ABC transporter [Paenibacillus sp. oral taxon 786
str. D14]
Length = 314
Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats.
Identities = 36/161 (22%), Positives = 70/161 (43%), Gaps = 4/161 (2%)
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
+++ +I GI+PG + I G++LIE S A + + + ++ P +
Sbjct: 55 EQVNYEIIGIDPGAGIMKATSQAIETYGLD--GWKLIEGSGAAMTAMLDKAVKSEKPIIV 112
Query: 196 LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
W PH + S ++ YL +++ G E ++T+ R + P L +++
Sbjct: 113 TGWTPHWMFSKYDLKYLEDPQKVYGEAE-EIHTLARKGLKEDHPTAYEFLNRFEWTSDEM 171
Query: 256 NEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDG 296
E+M I QD + +H D + +W G+T +G
Sbjct: 172 GEIMTAI-QEGQDPAEAAKAWADSHADRVDSWTEGLTPVNG 211
Score = 70.6 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 18/107 (16%), Positives = 35/107 (32%), Gaps = 1/107 (0%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFM 80
+ ++ + W A+T + +LE LGY + + + + +D
Sbjct: 207 TPVNGDKLKLSYVAWDSEIASTNLLEYVLESKLGYDVESLQVEAGPMWTGVASGDVDATA 266
Query: 81 GYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKS 127
W P E ++ + N+ G K L V I+
Sbjct: 267 AAWLPLTHADYWDKYGE-QVEDLGANMTGVKTGLVVPVYMDINSIED 312
>gi|239636663|ref|ZP_04677665.1| choline transporter [Staphylococcus warneri L37603]
gi|239598018|gb|EEQ80513.1| choline transporter [Staphylococcus warneri L37603]
Length = 504
Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats.
Identities = 38/303 (12%), Positives = 87/303 (28%), Gaps = 35/303 (11%)
Query: 2 YKILAVCLFLTTFSISYARDA---DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
K+L V + + + A ++ + T M +++E+
Sbjct: 207 KKLLIVLGTMIVVIMIAIIVPLFAQKGDKITLAGKLGSEPSVITNMYKILIEQDTDDTVE 266
Query: 59 IK--LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP-----------------YLEEGS 99
+K + F +LK+ ID ++ + L + ++
Sbjct: 267 VKDGMGKTAFLFNALKSDDIDGYLEFTGTVLGELTKEDLKSKQEPRVYQQAKQSLEKKYK 326
Query: 100 IKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ ++ Y LAV IK+ D++K + +L N+ +
Sbjct: 327 MTMLKPMKYNNTYALAVKRDFAKENHIKTIGDLSKVEDKLKPGFTL--EFNDRPDGFKAV 384
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ I ++ + ++ ++ L +
Sbjct: 385 KKAYGLN------ISNAKTMEPKLRYTAVEKGDINLIDAYSTDAELKQYDMVVLKD--DK 436
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F + + ++ P + + L + K S EM + KQD V +
Sbjct: 437 HVFPPYQGAPMFKEKFIKDHPEVKKPLNKLAGKISDEDMQEMNYKVTVKKQDPYQVAKDY 496
Query: 277 LRT 279
L
Sbjct: 497 LEK 499
>gi|148993318|ref|ZP_01822858.1| choline transporter (glycine betaine transport system permease
protein) [Streptococcus pneumoniae SP9-BS68]
gi|168489862|ref|ZP_02714061.1| ABC transporter membrane-spanning permease - choline transporter
[Streptococcus pneumoniae SP195]
gi|221232597|ref|YP_002511751.1| glycine/betaine ABC transporter [Streptococcus pneumoniae ATCC
700669]
gi|225857449|ref|YP_002738960.1| ABC transporter membrane-spanning permease - choline transporter
[Streptococcus pneumoniae P1031]
gi|298230333|ref|ZP_06964014.1| ABC transporter membrane-spanning permease - choline transporter
[Streptococcus pneumoniae str. Canada MDR_19F]
gi|298254719|ref|ZP_06978305.1| ABC transporter membrane-spanning permease - choline transporter
[Streptococcus pneumoniae str. Canada MDR_19A]
gi|298503585|ref|YP_003725525.1| ABC superfamily transporter membrane protein [Streptococcus
pneumoniae TCH8431/19A]
gi|147928085|gb|EDK79104.1| choline transporter (glycine betaine transport system permease
protein) [Streptococcus pneumoniae SP9-BS68]
gi|183571698|gb|EDT92226.1| ABC transporter membrane-spanning permease - choline transporter
[Streptococcus pneumoniae SP195]
gi|220675059|emb|CAR69637.1| ABC-type glycine betaine transport system protein [Streptococcus
pneumoniae ATCC 700669]
gi|225725436|gb|ACO21288.1| ABC transporter membrane-spanning permease - choline transporter
[Streptococcus pneumoniae P1031]
gi|298239180|gb|ADI70311.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Streptococcus pneumoniae TCH8431/19A]
gi|301794824|emb|CBW37280.1| ABC-type glycine betaine transport system protein [Streptococcus
pneumoniae INV104]
gi|332072684|gb|EGI83167.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Streptococcus pneumoniae GA17570]
Length = 506
Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats.
Identities = 39/303 (12%), Positives = 91/303 (30%), Gaps = 35/303 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDAD-SCTPVRFADTGWTDIAATTAMTSVILEEI--LGYKT 57
++ A+ L S S A A + A + M +++EE +
Sbjct: 209 IFSGFALVALLLGLSYSPALLAQKEKENLIIAGKIGPEPEILANMYKLLIEENTSMTATV 268
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------EGS 99
+ +LK IDI+ + E + P + +
Sbjct: 269 KPNFGTTSFLYEALKKGDIDIYPEFTGTVTESLLQPSPKVSHEPEQVYQVARDGIAKQDH 328
Query: 100 IKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ + Y +AV G+K+ D+ K + +L D
Sbjct: 329 LAYLKPMSYQNTYAVAVPKKIAQEYGLKTISDLKKVEGQLK---------AGFTLEFNDR 379
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ NK + L + + ++ + ++ ++ L +
Sbjct: 380 EDGNKGLQSMYGLNLNVATMQPALRYQAIQSGDIQITDAYSTDAELERYDLQVLED--DK 437
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F +++ L K P + R+L + K + + +++ + + + V +
Sbjct: 438 QLFPPYQGAPLMKEALLKKHPELERVLNTLAGKITESQMSQLNYQVGVEGKSAKQVAKEF 497
Query: 277 LRT 279
L+
Sbjct: 498 LQE 500
>gi|170755239|ref|YP_001781270.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Clostridium botulinum
B1 str. Okra]
gi|169120451|gb|ACA44287.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Clostridium botulinum
B1 str. Okra]
Length = 527
Score = 135 bits (339), Expect = 9e-30, Method: Composition-based stats.
Identities = 42/298 (14%), Positives = 92/298 (30%), Gaps = 34/298 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--L 61
I+ VC+ L + V +T+ + ++ K L
Sbjct: 237 IVGVCILLALVAPKIIGMGH--KKVVIGSKNFTEQIILGNILEELIHNKTDIDVETKLNL 294
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFI-----------------APYLEEGSIKLVA 104
V+F +LK GID+++ Y + + + E I+++
Sbjct: 295 GGTQVSFNALKAGGIDMYVEYTGTAYGNILNIKEPNRDKDTVYNRVKKDFKERFGIEVLN 354
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYG-IEPGNEGNQRILDMINNNK 163
Y +A + + + KE I G ++ +
Sbjct: 355 PMGFNNTYAMATTKEIAQKY--NLKTTSDLAKESSNMIAGPTIEFANRADGLIGLNKAYN 412
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+ KG I+ NN + ++ + N+ L + F +
Sbjct: 413 VNFKGVNPIDG------GLRYTALVNNETQIIDAFTTDGLIEQFNLVLLKD--DKRFFPD 464
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+V+ + L K P + +L + + + ++ + NK+D + V + L+
Sbjct: 465 YYAVPIVKEETLKKFPELREVLGKLDGRITDEKMRKLNYEVDVNKKDPKQVAKEFLQK 522
>gi|116493381|ref|YP_805116.1| periplasmic glycine betaine/choline-binding (lipo)protein of an
ABC-type transport system (osmoprotectant binding
protein) [Pediococcus pentosaceus ATCC 25745]
gi|116103531|gb|ABJ68674.1| Periplasmic glycine betaine/choline-binding (lipo)protein of an
ABC-type transport system (osmoprotectant binding
protein) [Pediococcus pentosaceus ATCC 25745]
Length = 308
Score = 135 bits (339), Expect = 9e-30, Method: Composition-based stats.
Identities = 37/305 (12%), Positives = 84/305 (27%), Gaps = 31/305 (10%)
Query: 1 MYKILAVCLFLTTFS--ISYARDAD----SCTPVRFADTGWTDIAATTAMTSVILEEILG 54
+ + L + L L + +S + V+ A T+ +++ ++E
Sbjct: 2 LKRFLKLILPLGALAVVLSGCGWPGLGGTTGNTVKIAAQNTTEQQVMSSVIQQLIEHDTN 61
Query: 55 YKTNIKL--LAVPVTFRSLKNKGIDIF---------------MGYWYPSLEKFIAPYLEE 97
I + V+F++ K D+ P
Sbjct: 62 LNAEIINNLGSGTVSFQAQKRGEADLTAVRFSGTDYQTILNGPQGRTPEQVNAYVKKEFN 121
Query: 98 GSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILD 157
+ G ++++ KK GI+ +
Sbjct: 122 RRYDMTYFPTYGFADTFQFMVTQDYAKKHHLENVSDLKKISSDMKVGIDQTWLSRKGDGY 181
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
++ + + ++ L + N+ L +
Sbjct: 182 ADFKKRYGYSFGNIYP----MQIGLVYNALASHKMDTVLGYSTDGRIRSYNLKLLKD--D 235
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
+ F + VV + L K P + R+L + K S+ E+ + NN ++ V +
Sbjct: 236 KNYFPPYNASVVVNNKSLKKYPELKRVLHKLDGKISLQTMQELNYQVDNNLKEPSVVAKE 295
Query: 276 MLRTH 280
L +
Sbjct: 296 FLEKN 300
>gi|282854797|ref|ZP_06264131.1| ABC transporter, substrate-binding protein, QAT family
[Propionibacterium acnes J139]
gi|282581943|gb|EFB87326.1| ABC transporter, substrate-binding protein, QAT family
[Propionibacterium acnes J139]
Length = 346
Score = 135 bits (339), Expect = 9e-30, Method: Composition-based stats.
Identities = 56/276 (20%), Positives = 101/276 (36%), Gaps = 11/276 (3%)
Query: 19 ARDADSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGID 77
A D+ T + W + AT + +L++ GY IK V +++ ID
Sbjct: 73 AMTPDTNTSLTIGAFNGWDESWATAGLIKQVLKKD-GYTVTIKGFDAGVGYQATAGGDID 131
Query: 78 IFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKE 137
I W P + ++ + AK +AVN A I + K
Sbjct: 132 IITDSWLPVTQAGYIRKYG-PKLENLGCWYDNAKLTIAVNKNSPAHSIAD---LKKTGSA 187
Query: 138 LGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLS 197
G IY IEPG E + I + + L L +S A +Q+++ +
Sbjct: 188 YGNVIYSIEPGAEMTKTIANQTL-PMYGLSNITLKTSSTPAMLAQLQKATKAGSNVAVTL 246
Query: 198 WEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENE 257
W PH + L + E +Y+ R + P ++L++N+ A +
Sbjct: 247 WRPHWAYDAYPVRDLDDPKNAISNAE-LIYSFGRPGFEKDHPKAAQLIRNLAIDDAHLSS 305
Query: 258 MMKLILNN---KQDRQFVGRTMLRTHPDLLKNWLIG 290
+ L+++ + + +PD + +WL G
Sbjct: 306 LEHLMVDTTKRGGQQDTAISRWMADNPDWVHDWLTG 341
>gi|161831505|ref|YP_001596136.1| quaternary amine ABC transporter periplasmic substrate-binding
protein [Coxiella burnetii RSA 331]
gi|215918906|ref|NP_819223.2| quaternary amine ABC transporter permease/periplasmic amine-binding
protein [Coxiella burnetii RSA 493]
gi|161763372|gb|ABX79014.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
permease/periplasmic amine-binding protein [Coxiella
burnetii RSA 331]
gi|206583791|gb|AAO89737.2| glycine betaine transport system permease protein [Coxiella
burnetii RSA 493]
Length = 526
Score = 135 bits (339), Expect = 9e-30, Method: Composition-based stats.
Identities = 32/306 (10%), Positives = 75/306 (24%), Gaps = 37/306 (12%)
Query: 2 YKILAVCLFLTTFSIS--------YARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL 53
KI +F+ F+ + A +++ + + ++E
Sbjct: 217 KKIKLTFIFILLFASLYLMIDTIIPTAFKSKKNTIVIATKNFSEQYILGDIMADMIETRT 276
Query: 54 GYKT--NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFI----------------APYL 95
L + + +L N ID++ Y + + Y
Sbjct: 277 HLTVRKKFNLGSTAIIQNALLNGEIDLYPEYTGTAYLTVLHHANLVSAPQIFKIVKKEYQ 336
Query: 96 EEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRI 155
++ ++ + LAV I + +
Sbjct: 337 QQFNLIWLNPFGFNNSQTLAVRADFAKQHRLKTLSDLAVISP-RLTIAAPAEFLKRPDAL 395
Query: 156 LDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG 215
+ F K ++ I + RN V + ++ L
Sbjct: 396 PGLKRVYGFRFKRVIQMQPD------LIYQAIRNKDVNVIEVFTTDGRIPAYHLVPLED- 448
Query: 216 EEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVG 273
+ + V+R +L P + + L + + L+ + + V
Sbjct: 449 -DKHLYPPYYAAPVIREAFLKAHPEVEKALAPLAGLIDEKTMQHLNALVDIKHESPEKVA 507
Query: 274 RTMLRT 279
L
Sbjct: 508 HDFLVE 513
>gi|227517637|ref|ZP_03947686.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Enterococcus faecalis TX0104]
gi|227074894|gb|EEI12857.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Enterococcus faecalis TX0104]
Length = 505
Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 38/283 (13%), Positives = 90/283 (31%), Gaps = 34/283 (12%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGID 77
+ + + A + M ++EE + +K + +LK+ ID
Sbjct: 229 QTSSKEKQLTIAGKLGAEPDIIINMYKALIEENSDIQVTLKPNFGKTTFLYNALKSDEID 288
Query: 78 IFMGYWYPSLEKFIAPYLE------------------EGSIKLVAENLQGAKYMLAVNDV 119
++ + +E F+ + + ++ L+ Y +AV
Sbjct: 289 LYPEFTGTVIETFLKNPPQLDNQPQVVYEAARAGLKKQENLTLLKPMRYENTYAVAVKRS 348
Query: 120 GFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+K+ D+ K +L +D + K + + L +
Sbjct: 349 FAKAHQLKTISDLQKISNQLR---------AGFTLEFIDRQDGYKGLQEKYHLNLNVQSM 399
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+ + N V ++ ++ L + + F ++++ L+K
Sbjct: 400 EPALRYQAINNGEVNVIDAYSTDSELRQYDLVTLED--DQALFPPYQGAPLIKTATLEKY 457
Query: 239 PNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
P ++ +L + K S +EM + QD V + L+
Sbjct: 458 PELAEILNKLAGKISEEEMSEMNYQVNVEGQDPSIVAKDYLKE 500
>gi|225855295|ref|YP_002736807.1| ABC transporter membrane-spanning permease - choline transporter
[Streptococcus pneumoniae JJA]
gi|225723126|gb|ACO18979.1| ABC transporter membrane-spanning permease - choline transporter
[Streptococcus pneumoniae JJA]
Length = 506
Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 39/303 (12%), Positives = 91/303 (30%), Gaps = 35/303 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDAD-SCTPVRFADTGWTDIAATTAMTSVILEEI--LGYKT 57
++ A+ L S S A A + A + M +++EE +
Sbjct: 209 IFSGFALVALLLGLSYSPALLAQKEKENLIIAGKIGPEPEILANMYKLLIEENTSMTATV 268
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------EGS 99
+ +LK IDI+ + E + P + +
Sbjct: 269 KPNFGTTSFLYEALKKGDIDIYPEFTGTVTESLLQPSPKVSHEPEQVYQVARDGIAKQDH 328
Query: 100 IKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ + Y +AV G+K+ D+ K + +L D
Sbjct: 329 LAYLKPMSYQNTYAVAVPKKIAQEYGLKTISDLKKVEGQLK---------AGFTLEFNDR 379
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ NK + L + + ++ + ++ ++ L +
Sbjct: 380 EDGNKGLQSMYGLNLNVATMQPALRYQAIQSGDIQITDAYSTDAELERYDLQVLED--DK 437
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F +++ L K P + R+L + K + + +++ + + + V +
Sbjct: 438 QLFPPYQGAPLMKEALLKKHPELERVLNTLAGKITESQMSQLNYQVGVEGKSAKQVAKEF 497
Query: 277 LRT 279
L+
Sbjct: 498 LQE 500
>gi|257415245|ref|ZP_05592239.1| ABC transporter membrane-spanning permease [Enterococcus faecalis
AR01/DG]
gi|257157073|gb|EEU87033.1| ABC transporter membrane-spanning permease [Enterococcus faecalis
ARO1/DG]
Length = 505
Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 38/283 (13%), Positives = 90/283 (31%), Gaps = 34/283 (12%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGID 77
+ + + A + M ++EE + +K + +LK+ ID
Sbjct: 229 QTSSKEKQLTIAGKLGAEPDIIINMYKALIEENSDIQVTLKPNFGKTTFLYNALKSDEID 288
Query: 78 IFMGYWYPSLEKFIAPYLE------------------EGSIKLVAENLQGAKYMLAVNDV 119
++ + +E F+ + + ++ L+ Y +AV
Sbjct: 289 LYPEFTGTVIETFLKNPPQLDNQPQVVYEAARAGLKKQENLTLLKPMRYENTYAVAVKRS 348
Query: 120 GFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+K+ D+ K +L +D + K + + L +
Sbjct: 349 FAKAHQLKTISDLQKISNQLK---------AGFTLEFIDRQDGYKGLQEKYHLNLNVQSM 399
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+ + N V ++ ++ L + + F ++++ L+K
Sbjct: 400 EPALRYQAINNGEVNVIDAYSTDSELKQYDLVTLED--DQALFPPYQGAPLIKTATLEKY 457
Query: 239 PNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
P ++ +L + K S +EM + QD V + L+
Sbjct: 458 PELAEILNKLAGKISEEEMSEMNYQVNVEGQDPSIVAKDYLKE 500
>gi|194016608|ref|ZP_03055222.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Bacillus pumilus ATCC
7061]
gi|194012081|gb|EDW21649.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Bacillus pumilus ATCC
7061]
Length = 505
Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 32/301 (10%), Positives = 81/301 (26%), Gaps = 36/301 (11%)
Query: 2 YKILAVCLFLTTFSISYARDA----DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
K + + + + ++ +M +++E+ +
Sbjct: 207 KKTVISVTIFAVIAGAIVAGPLLFQQEKKEITIGGKLGSEPEILISMYKLLIEQDTDIQV 266
Query: 58 NIKL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP-----------------YLEEG 98
N+K F++L++ IDI+ + ++ +F+
Sbjct: 267 NLKPGLGKTSFVFQALRSGDIDIYPEFTGTAISEFLKQTAKSTDKEKVYEQARRGLESSF 326
Query: 99 SIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
++L+ Y LAV S K D
Sbjct: 327 QLRLLEPMAYNNTYALAVPQSLADQYDVSNISDLAKIKNRIK--------AGFTLEFSDR 378
Query: 159 INNNKFSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
+ + K ++ + ++ R + + ++ + L +
Sbjct: 379 QDGYRGIQKTYQFSFDDVVTMEPKLRYRAIQKGDINLVDAYSTDSELRQYKLKVLDD--D 436
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
F ++R + L + P I L + + + EM + +D V +
Sbjct: 437 QHVFPPYQGAPLLRQETLTEYPEIEASLNKLGGQITDDEMREMNYGVNVKGKDAFQVAKA 496
Query: 276 M 276
Sbjct: 497 Y 497
>gi|163789860|ref|ZP_02184296.1| hypothetical protein CAT7_06493 [Carnobacterium sp. AT7]
gi|159874800|gb|EDP68868.1| hypothetical protein CAT7_06493 [Carnobacterium sp. AT7]
Length = 505
Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 32/301 (10%), Positives = 74/301 (24%), Gaps = 35/301 (11%)
Query: 2 YKILAVCLFLTTFSISYARDA---DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
K + L+ + + A + M ++EE
Sbjct: 207 KKTMITLSILSVIILGLLIAPLLMKDKEELVIAGKLGAEPEIIMNMYKYLIEEETDVAVT 266
Query: 59 IKL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE-----------------EGS 99
++ F +L++ ID++ Y L F+ L +
Sbjct: 267 LEPNMGKTTFVFNALESGDIDVYTEYTGTILATFLNEELNSTDEQDVYKQAKKGLASQYD 326
Query: 100 IKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI 159
+ L+ Y LAV K E D
Sbjct: 327 MTLLKPMAFNNTYTLAVTSELAEQY--------DLKTISDLIPIADEIKAGFTLEFSDRQ 378
Query: 160 NNNKFSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ + L ++ + ++ + ++ L +
Sbjct: 379 DGYLGIQDLYSLKFGEVQTMEPKLRYAAIETGDINLVDAYSTDSELAQYDLVVLEDDRGL 438
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
++ + ++ P + +L + K + A EM + + + V +
Sbjct: 439 F--PPYQGAPLMLDETIENFPEVEDILNQLAGKITDAEMREMNYAVNVDGKSASEVAQQF 496
Query: 277 L 277
L
Sbjct: 497 L 497
>gi|149006485|ref|ZP_01830184.1| choline transporter (glycine betaine transport system permease
protein) [Streptococcus pneumoniae SP18-BS74]
gi|168483392|ref|ZP_02708344.1| ABC transporter membrane-spanning permease - choline transporter
[Streptococcus pneumoniae CDC1873-00]
gi|225861655|ref|YP_002743164.1| ABC transporter membrane-spanning permease - choline transporter
[Streptococcus pneumoniae Taiwan19F-14]
gi|147761783|gb|EDK68746.1| choline transporter (glycine betaine transport system permease
protein) [Streptococcus pneumoniae SP18-BS74]
gi|172043323|gb|EDT51369.1| ABC transporter membrane-spanning permease - choline transporter
[Streptococcus pneumoniae CDC1873-00]
gi|225726883|gb|ACO22734.1| ABC transporter membrane-spanning permease - choline transporter
[Streptococcus pneumoniae Taiwan19F-14]
gi|327390023|gb|EGE88368.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Streptococcus pneumoniae GA04375]
gi|332199881|gb|EGJ13956.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Streptococcus pneumoniae GA41317]
gi|332200416|gb|EGJ14489.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Streptococcus pneumoniae GA47368]
Length = 506
Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 39/303 (12%), Positives = 91/303 (30%), Gaps = 35/303 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDAD-SCTPVRFADTGWTDIAATTAMTSVILEEI--LGYKT 57
++ A+ L S S A A + A + M +++EE +
Sbjct: 209 IFSGFALVALLLGLSYSPALLAQKEKENLIIAGKIGPEPEILANMYKLLIEENTSMTATV 268
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------EGS 99
+ +LK IDI+ + E + P + +
Sbjct: 269 KPNFGTTSFLYEALKKGDIDIYPEFTGTVTESLLQPSPKVSHEPEQVYQVARDGIAKQDH 328
Query: 100 IKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ + Y +AV G+K+ D+ K + +L D
Sbjct: 329 LAYLKPMSYQNTYAVAVPKKIAQEYGLKTISDLKKVEGQLK---------AGFTLEFNDR 379
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ NK + L + + ++ + ++ ++ L +
Sbjct: 380 EDGNKGLQSMYGLNLNVATMQPALRYQAIQSGDIQITDAYSTDAELERYDLQVLED--DK 437
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F +++ L K P + R+L + K + + +++ + + + V +
Sbjct: 438 QLFPPYQGAPLMKEALLKKHPELERVLNTLAGKITESQMSQLNYQVGVEGKSAKQVAKEF 497
Query: 277 LRT 279
L+
Sbjct: 498 LQE 500
>gi|317495803|ref|ZP_07954166.1| inner membrane binding protein [Gemella moribillum M424]
gi|316913980|gb|EFV35463.1| inner membrane binding protein [Gemella moribillum M424]
Length = 504
Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 31/303 (10%), Positives = 85/303 (28%), Gaps = 36/303 (11%)
Query: 3 KILAVCLFLTTFSISYARDADSC---TPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
K + + L +++ + + + A + M +++E +
Sbjct: 206 KTIVITLLSAIVAVTLSFTPLAKTSNDKLVIAGKLGAEPEILINMYKILIENETDINVEV 265
Query: 60 KL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE-------------------EG 98
K + +LK IDI+ + + + +
Sbjct: 266 KPNFGKTSFLYEALKGGSIDIYPEFTGTVTTTLLKEPVTNISNDPKEVYEIAKEKILTQD 325
Query: 99 SIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ + + Y LAV++ K + + +E N+ +L +
Sbjct: 326 RLVYLEPSKFQDTYALAVSEKYAKDNNVQKISDLKRVESSLTAGFSLE-FNDREDGVLGL 384
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+L + + + N + + + L +++
Sbjct: 385 KKLYGLNLNIKTMEP-------ALRYQAIANGDVNIIEVFSTDSKLITNKLKVLEDDKKL 437
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
++R + L K P + ++L + K + +M + + V +
Sbjct: 438 F--PPYQGAPLLREETLKKYPQLEKILGKLAGKITTEEMTKMNYAVDVEGKSAYEVAKAY 495
Query: 277 LRT 279
L+
Sbjct: 496 LQK 498
>gi|330950444|gb|EGH50704.1| histidine transporter, periplasmic histidine-binding protein
[Pseudomonas syringae Cit 7]
Length = 277
Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 34/286 (11%), Positives = 86/286 (30%), Gaps = 28/286 (9%)
Query: 40 ATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS 99
T M ++L+ G + +L N I + W + G
Sbjct: 2 LLTDMLQILLKNGYGCAIDTLPGNSITMESALSNNDIQVLAEEWI-GRSEVWNKAAASGK 60
Query: 100 IKLVAENLQGAKYMLAVNDVGFALGIKSYQD------------------IAKYKKELGAK 141
+ V + GA V K ++ +
Sbjct: 61 VVGVGAPIIGATEGWYVPRYLVEGDAKRNLKPKAPDLKKIADLTQYVALFKDPEEPDKGR 120
Query: 142 IYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPH 201
Y G +M+ + + A + + + P +F W P
Sbjct: 121 FYNCPAGWTCELENSEMLKSYGLEASYTNFRPGTGPALDAAVLSSYKRGEPILFYYWSPT 180
Query: 202 PINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKL 261
P+ +++ L + + S+ + + + ++ P + +L+ + + L N+ +
Sbjct: 181 PLMGQVDLLKLEEKPGVDK--KISIQVGLSNVFHEQAPELVAVLEKVNLPIDLLNQNLAR 238
Query: 262 ILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ + D + + + HP++ W+ ++++E +
Sbjct: 239 MSKERIDSPKLAKIFFKEHPEIWHTWVSDA-------AAKKIEATL 277
>gi|238927240|ref|ZP_04659000.1| glycine betaine ABC superfamily ATP binding cassette transporter,
membrane protein [Selenomonas flueggei ATCC 43531]
gi|238884915|gb|EEQ48553.1| glycine betaine ABC superfamily ATP binding cassette transporter,
membrane protein [Selenomonas flueggei ATCC 43531]
Length = 555
Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 36/294 (12%), Positives = 72/294 (24%), Gaps = 31/294 (10%)
Query: 7 VCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL---LA 63
L S + A T+ M +++E+ G + I
Sbjct: 267 AAAVLIAASGVTYGFFGRADVIHIATKPMTEQLIMGEMLKMVIEQNTGLEARITAGVGGG 326
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAP---------------YLEEGSIKLVAENLQ 108
+++ DI+ Y + Y ++ + V
Sbjct: 327 TSNIQPGMESGAFDIYPEYTGTGWNMVLKEDSKYSEEMFPQLTAGYEKKFRMHWVGMYGF 386
Query: 109 GAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFSLK 167
+ +AV + ++ +G E E + S
Sbjct: 387 NDTFGIAVRRAVAEQY--DLHTYSDLRRAAPRLTFGAEYDFYEREDGYSALCAAYGLSF- 443
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
+ + V + S + L + F
Sbjct: 444 -----ARTVDLDIGLKYAALADGQVDVMTVFTTDGQLSAADAIVLTD--DQHFFPSYRCG 496
Query: 228 TVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
VVR D L + P +S L ++ S M + + ++ + V LR
Sbjct: 497 NVVREDVLTRHPELSTALLSLEGSISDEEMAAMNHAVESEGREPRAVAEEFLRK 550
>gi|224477417|ref|YP_002635023.1| putative glycine betaine/carnitine/choline ABC transporter
(osmoprotec) opuCC [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222422024|emb|CAL28838.1| putative glycine betaine/carnitine/choline ABC transporter
(osmoprotec) opuCC [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 313
Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 34/300 (11%), Positives = 75/300 (25%), Gaps = 31/300 (10%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--- 60
++ + L+ S+ D+ S V+ ++ + M +I+E K
Sbjct: 11 MVTCLVILSGCSLPGLGDSRSDDDVKITALATSESQIMSHMVRLIIEHDSHGKIKPTLLN 70
Query: 61 -LLAVPVTFRSLKNKGIDIF------MGYWYPSLEKFIAPYLEEGSIKLVAE-------- 105
+ + + +L N +I E I +
Sbjct: 71 NMGSSTIQHNALMNGDANISGVRYTGTDLVGALQEDPIKDPKKALKATQEGFQKKFHQKF 130
Query: 106 ---NLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
Y V K ++ G++ +
Sbjct: 131 FPSYGFDNTYAFMVTKETAEKYHLETVSDLKKHEKDLR--LGVDSSWLNRKGDGYPGFKK 188
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
++ + + + N V L + + + L + F
Sbjct: 189 EYGIDFDTVRP----MQIGLVYDALNNKKLDVALGYSTDGRIAAYGLKVLKD--DKHFFP 242
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
V L K P I+++L + K S ++ ++ V L+ H
Sbjct: 243 PYDASPVATDAVLKKHPEINKVLDKLAGKISTKDMQQLNYEADGKGKEPAVVAEEFLKKH 302
>gi|304437239|ref|ZP_07397199.1| glycine betaine ABC superfamily ATP binding cassette transporter,
membrane protein [Selenomonas sp. oral taxon 149 str.
67H29BP]
gi|304369731|gb|EFM23396.1| glycine betaine ABC superfamily ATP binding cassette transporter,
membrane protein [Selenomonas sp. oral taxon 149 str.
67H29BP]
Length = 514
Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 36/294 (12%), Positives = 71/294 (24%), Gaps = 31/294 (10%)
Query: 7 VCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL---LA 63
L S + A T+ M +++E+ G + I
Sbjct: 226 AAAVLIAASGVTYGFFGRADVIHIATKPMTEQLIMGEMLKMVIEQDTGLEARITAGVGGG 285
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAP---------------YLEEGSIKLVAENLQ 108
+++ DI+ Y + Y + ++ V
Sbjct: 286 TSNIQPGMESGAFDIYPEYTGTGWNMVLKEDTKYSEEKFSQLTADYEKAFRMRWVGMYGF 345
Query: 109 GAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFSLK 167
+ L V + + +G E E + S
Sbjct: 346 NDTFGLVVRRAVAEQY--DLHTYSDLHRAAPRLTFGAEYDFYEREDGYPALCAAYGLSF- 402
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
+ + V + S + L + F
Sbjct: 403 -----ARTVDLDIGLKYAALADGQVDVMTVFTTDGQLSAADAIVLTD--DQHFFPSYRCG 455
Query: 228 TVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
VVR D L + P +S +L ++ S M + + ++ + V LR
Sbjct: 456 NVVREDVLTRHPELSTVLLSLEGSISDEEMAAMNHAVESEGREPRAVAEEFLRK 509
>gi|148989653|ref|ZP_01820985.1| choline transporter [Streptococcus pneumoniae SP6-BS73]
gi|147924970|gb|EDK76052.1| choline transporter [Streptococcus pneumoniae SP6-BS73]
Length = 506
Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 39/303 (12%), Positives = 91/303 (30%), Gaps = 35/303 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDAD-SCTPVRFADTGWTDIAATTAMTSVILEEI--LGYKT 57
++ A+ L S S A A + A + M +++EE +
Sbjct: 209 IFSGFALVALLLGLSYSPALLAQKEKENLIIAGKIGPEPEILANMYKLLIEENTSMTATV 268
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------EGS 99
+ +LK IDI+ + E + P + +
Sbjct: 269 KPNFGTTSFLYEALKKGDIDIYPEFTGTVTESLLQPSPKVSHEPEQVYQVARDGIAKQDH 328
Query: 100 IKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ + Y +AV G+K+ D+ K + +L D
Sbjct: 329 LAYLKPMSYQNTYAVAVPKKIAQEYGLKTISDLKKVEGQLK---------AGFTLEFNDR 379
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ NK + L + + ++ + ++ ++ L +
Sbjct: 380 EDGNKGLQSMYGLNLNVATMQPALRYQAIQSGDIQITDAYSTDAELERYDLQVLED--DK 437
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F +++ L K P + R+L + K + + +++ + + + V +
Sbjct: 438 QLFPPYQGAPLMKEALLKKHPELERVLNTLAGKITESQMSQLNYQVGVEGKSAKQVAKEF 497
Query: 277 LRT 279
L+
Sbjct: 498 LQE 500
>gi|110679133|ref|YP_682140.1| glycine betaine/L-proline ABC transporter, substrate binding
protein, putative [Roseobacter denitrificans OCh 114]
gi|109455249|gb|ABG31454.1| glycine betaine/L-proline ABC transporter, substrate binding
protein, putative [Roseobacter denitrificans OCh 114]
Length = 319
Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 42/320 (13%), Positives = 94/320 (29%), Gaps = 40/320 (12%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
K++ L ++A V+ WT A + ++ +G +
Sbjct: 5 MKLMTAALASVVSVPAFA------EEVKIGVPTWTGAQAIAYVLGEVVTTRIGGTVDYVP 58
Query: 62 LAVPVTFRSLKNK--GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
F+++ ID+ W P+ E F Y++E ++ N V+
Sbjct: 59 GNNATIFQAMDQGEGDIDVHPDVWLPNQESFTKQYVDEAGTVTLSTNPYQGNQGFCVSKD 118
Query: 120 GFALGIKSYQD---------IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
A + + +++ PG + + L
Sbjct: 119 FAAANDITDIADLGRPDVAALMDSDGNGLGEMWIGAPGWASANVNEVKVRDYGL-LDFIE 177
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG-------------EE 217
I A E ++I+ F +EPH + ++ L ++
Sbjct: 178 PIRAEEAVKTARIKDSIAKGEGYAFYCYEPHAVWYMFDVVMLTEPAFDPEKYIMVQPSDD 237
Query: 218 ISGFGEASVYT---------VVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQD 268
+ ++ V T + ++ P I+ N + + + + I N ++
Sbjct: 238 ADWYEKSMVATKDDLKQVQIAWSNSLPERAPAIAEFFANFQLTADDVSSLAFEISANGRE 297
Query: 269 RQFVGRTMLRTHPDLLKNWL 288
V + + D + L
Sbjct: 298 PSDVAAEWVAANSDRVDAML 317
>gi|332073012|gb|EGI83492.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Streptococcus pneumoniae GA41301]
Length = 506
Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 39/303 (12%), Positives = 91/303 (30%), Gaps = 35/303 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDAD-SCTPVRFADTGWTDIAATTAMTSVILEEI--LGYKT 57
++ A+ L S S A A + A + M +++EE +
Sbjct: 209 IFSGFALVALLLGLSYSPALLAQKEKENLIIAGKIGPEPEILANMYKLLIEENTSMTATV 268
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------EGS 99
+ +LK IDI+ + E + P + +
Sbjct: 269 KPNFGTTSFLYEALKKGDIDIYPEFTGTVTESLLQPSPKVSHEPEQVYQVARDGIAKQDH 328
Query: 100 IKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ + Y +AV G+K+ D+ K + +L D
Sbjct: 329 LAYLKPMSYQNTYAVAVPKKIAQEYGLKTISDLKKVEGQLK---------AGFTLEFNDR 379
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ NK + L + + ++ + ++ ++ L +
Sbjct: 380 EDGNKGLQSMYGLNLNVATMQPALRYQAIQSGDIQITDAYSTDAELERYDLQVLED--DK 437
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F +++ L K P + R+L + K + + +++ + + + V +
Sbjct: 438 QLFPPYQGAPLMKEALLKKHPELERVLNTLAGKITESQMSQLNYQVGVEGKSAKQVAKEF 497
Query: 277 LRT 279
L+
Sbjct: 498 LQE 500
>gi|225859623|ref|YP_002741133.1| choline transporter [Streptococcus pneumoniae 70585]
gi|225721706|gb|ACO17560.1| choline transporter [Streptococcus pneumoniae 70585]
Length = 506
Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 35/305 (11%), Positives = 88/305 (28%), Gaps = 39/305 (12%)
Query: 3 KILAVCLFLTTFSISYARDAD-----SCTPVRFADTGWTDIAATTAMTSVILEEI--LGY 55
+ + L T + + + A + M +++EE +
Sbjct: 207 RTIFSGFALVTVLLGLSYSPALLVQKEKENLIIAGKIGPEPEILANMYKLLIEENTSMTA 266
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------E 97
+ +LK IDI+ + E + P + +
Sbjct: 267 TVKPNFGTTSFLYEALKKGDIDIYPEFTGTVTESLLQPSPKVSHEPEQVYQVARDGIAKQ 326
Query: 98 GSIKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
+ + Y +AV G+K+ D+ K + +L
Sbjct: 327 DHLAYLKPMSYQNTYAVAVPKKIAQEYGLKTISDLKKVEGQLK---------AGFTLEFN 377
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
D + NK + L + + ++ + ++ ++ L
Sbjct: 378 DREDGNKGLQSMYGLNLNVATMQPALRYQAIQSGDIQITDAYSTDAELERYDLQVLED-- 435
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F +++ L K P + R+L + K + + +++ + + + V +
Sbjct: 436 DKQLFPPYQGAPLMKEALLKKHPELERVLNKLAGKITESQMSQLNYQVGVEGKSAKQVAK 495
Query: 275 TMLRT 279
L+
Sbjct: 496 EFLQE 500
>gi|167041190|gb|ABZ05948.1| putative Substrate binding domain of ABC-type glycine betaine
transport system [uncultured marine microorganism
HF4000_001L24]
Length = 324
Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 42/297 (14%), Positives = 87/297 (29%), Gaps = 26/297 (8%)
Query: 1 MYKILAVCLFLTTFSISYAR--DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M KI+ + S ADS P R W+ + ILE+ +G
Sbjct: 12 MIKIIKGLVVAAIISAFSFATYAADSKKPTRIPVHNWSSQIVMAYVIGGILED-MGGNVE 70
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAEN----LQGAKYML 114
+ S++ IDI W + K ++G + ++ L+ Y
Sbjct: 71 YVPADSQKVYESIRIGDIDISQEVWQSAFGKSFDAARDKGGLLDWGDHVARSLEDMGYPN 130
Query: 115 AVNDVGFALGIKSYQDIA--KYKKELGAKIYGIEPGN------EGNQRILDMINNNKFSL 166
V + G G+ S++ + K G + + +
Sbjct: 131 WVEEKGLCPGLPSWEALKAEACWKNFVTPDSGGKGRWLEGPQTWHQDLMPQRMTALGLDA 190
Query: 167 KGFRLIEASELASFSQIRRDQRNNIPAVFLSWEP-----------HPINSDLNIHYLPGG 215
S A ++++ ++ + +W P GG
Sbjct: 191 NWVVKFAGSADALWAELAAAEKEGRGTIIFNWTPNFTDGAGFTFIDFPPYTDGCRPADGG 250
Query: 216 EEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
+ G + + V + P+ +++ K + F+ M + +K +
Sbjct: 251 DGKCGSPDGYLKKAVNEKWTKTHPDAAKMFKKLAFTTGQIGAMAAYVDVDKMTHEDA 307
>gi|183598092|ref|ZP_02959585.1| hypothetical protein PROSTU_01455 [Providencia stuartii ATCC 25827]
gi|188020249|gb|EDU58289.1| hypothetical protein PROSTU_01455 [Providencia stuartii ATCC 25827]
Length = 332
Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 39/301 (12%), Positives = 90/301 (29%), Gaps = 35/301 (11%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRSLKNKGIDIFM 80
+ + ++ T + + LE LGY+ IK + V + S+ N
Sbjct: 26 PGKGVKITPVQSTISEETFQTLLVAKALE-KLGYEVEPIKEVDYNVAYASIANGDATYLA 84
Query: 81 GYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD---------I 131
W P + + + + A ++ + D +
Sbjct: 85 VSWVPLHDAQYNAAGGDKVFYRQGDYVVNAAQGYLIDKKTAEKYKITNIDQLKDPKIAKL 144
Query: 132 AKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI 191
A + G PG I + + + + A + +
Sbjct: 145 FDTDGNGKADLTGCNPGWGCEAAINNHLKAYGLEKT-VEHNQGNYAAMMADTITRYKEGK 203
Query: 192 PAVFLSWEPHPINSD----LNIHYLPGGE----------------EISGFGEASVYTVVR 231
P ++ +W P+ I+ ++ +L + GF +++ V
Sbjct: 204 PILYYTWTPYWISDVLKPGRDVVWLEVPFSSMPNGDKTDTALPNGKNYGFPPNTMHIVAN 263
Query: 232 SDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRT---MLRTHPDLLKNWL 288
+ +K P ++L + +K +A N + N + + + R ++ H W+
Sbjct: 264 KKWAEKNPAAAKLFEIMKLPIADINAQNLRMHNGEASQSDIRRHTDAWIKAHQTTFDGWV 323
Query: 289 I 289
Sbjct: 324 E 324
>gi|150018365|ref|YP_001310619.1| glycine/betaine ABC transporter substrate-binding protein
[Clostridium beijerinckii NCIMB 8052]
gi|149904830|gb|ABR35663.1| Substrate-binding region of ABC-type glycine betaine transport
system [Clostridium beijerinckii NCIMB 8052]
Length = 300
Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 39/301 (12%), Positives = 91/301 (30%), Gaps = 35/301 (11%)
Query: 1 MYKILAVCLFLTTFSISYAR-----DADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
+ +I+ L T A + +R +T+ + + ++ LE+ GY
Sbjct: 5 IKRIIGTLLITVTLGGLVACGNSKGSSGDKNTIRIGSKDFTENSIVGEVYALALEDK-GY 63
Query: 56 KTNIKLL-AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP----------------YLEEG 98
K A V SL N ID++ Y L + Y ++
Sbjct: 64 KVERVPNIASSVIHTSLVNDEIDLYPEYTGTGLLAILKKDLITDPKQVYDTVKSEYEKQF 123
Query: 99 SIKLVAENLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILD 157
+++ + + L + GIK+ D+ K+ + ++ I
Sbjct: 124 NLEWLDYSPANDGQGLVIRTDVANKLGIKTISDLQKH--AGEIRFASQGEFDKREDGIPG 181
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
+ + + NN + + L +
Sbjct: 182 LEKVYGKFDFKSTKVYDN-----GLKYEVLANNEADLAPASTTEGQLVKPEFTLLED--D 234
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
+ ++ V++ LD P+I+ +L + ++ + +K++ + V +
Sbjct: 235 KHVWPPYNLAPVIKKSVLDAHPDIADILNKVSASLDTKKITKLNAEVDVDKKEYEEVAKE 294
Query: 276 M 276
Sbjct: 295 Y 295
>gi|260888767|ref|ZP_05900030.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Selenomonas sputigena
ATCC 35185]
gi|330839839|ref|YP_004414419.1| ABC-type glycine betaine transport, periplasmic subunit
[Selenomonas sputigena ATCC 35185]
gi|260861520|gb|EEX76020.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Selenomonas sputigena
ATCC 35185]
gi|329747603|gb|AEC00960.1| ABC-type glycine betaine transport, periplasmic subunit
[Selenomonas sputigena ATCC 35185]
Length = 516
Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 36/297 (12%), Positives = 75/297 (25%), Gaps = 32/297 (10%)
Query: 6 AVCLFLTTFSISYARDADSCTP---VRFADTGWTDIAATTAMTSVILEEILGYKTNIKL- 61
+ L + A T +R A T+ M ++E+ G K +
Sbjct: 224 LAAISLALVAAGGAYAFFQSTKVAVIRIATKPMTEQLILGEMLKFVIEQDSGLKVALTPG 283
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIA---------------PYLEEGSIKLVA 104
+++N DI+ Y + + Y ++ +
Sbjct: 284 VGGGTSNIMPAMENGDFDIYPEYTGTGWLQVLKRTDAYDESRFAELQEEYRNRYHMEWLG 343
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKF 164
+ +AV + + E M
Sbjct: 344 MTGFNDTFGIAVRRDLAERYQLRTYSDLARIADKMNFGAEYD-FFEREDGFPAMCRAYGM 402
Query: 165 SLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEA 224
+ ++ + + + S +N L ++
Sbjct: 403 NF------ASTVDIDIGLKYQALDEGKLDSMIVFTTDGRLSKVNGIVLEDDKKFFT--SY 454
Query: 225 SVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
VVR + L P + LL + S A EM ++ + ++ + V R L
Sbjct: 455 ECGMVVREEALSAHPELRDLLAHFDGLISEAEMAEMNDVVESGGEEPRAVARRFLEE 511
>gi|47092712|ref|ZP_00230498.1| glycine betaine/carnitine/choline ABC [Listeria monocytogenes str.
4b H7858]
gi|254824518|ref|ZP_05229519.1| glycine betaine/carnitine/choline ABC transporter [Listeria
monocytogenes FSL J1-194]
gi|254852535|ref|ZP_05241883.1| glycine betaine/carnitine/choline ABC transporter [Listeria
monocytogenes FSL R2-503]
gi|254932607|ref|ZP_05265966.1| glycine betaine/carnitine/choline ABC transporter [Listeria
monocytogenes HPB2262]
gi|255521343|ref|ZP_05388580.1| glycine betaine/carnitine/choline ABC transporter (membrane
protein) [Listeria monocytogenes FSL J1-175]
gi|300765775|ref|ZP_07075751.1| glycine betaine/carnitine/choline ABC transporter [Listeria
monocytogenes FSL N1-017]
gi|47018900|gb|EAL09647.1| glycine betaine/carnitine/choline ABC [Listeria monocytogenes str.
4b H7858]
gi|258605843|gb|EEW18451.1| glycine betaine/carnitine/choline ABC transporter [Listeria
monocytogenes FSL R2-503]
gi|293584166|gb|EFF96198.1| glycine betaine/carnitine/choline ABC transporter [Listeria
monocytogenes HPB2262]
gi|293593757|gb|EFG01518.1| glycine betaine/carnitine/choline ABC transporter [Listeria
monocytogenes FSL J1-194]
gi|300513550|gb|EFK40621.1| glycine betaine/carnitine/choline ABC transporter [Listeria
monocytogenes FSL N1-017]
gi|328465469|gb|EGF36698.1| glycine betaine/carnitine/choline ABC transporter (membrane
protein) [Listeria monocytogenes 1816]
gi|328475019|gb|EGF45811.1| glycine betaine/carnitine/choline ABC transporter (membrane
protein) [Listeria monocytogenes 220]
gi|332311863|gb|EGJ24958.1| Similiar to glycine betaine/carnitine/choline ABC transporter
[Listeria monocytogenes str. Scott A]
Length = 504
Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 37/299 (12%), Positives = 92/299 (30%), Gaps = 34/299 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
++ + LT I A + A + M +++E+ K N+K
Sbjct: 212 TISAGILLTAAIIVVPYFASDKKEITIAGKLGAEPEILINMYKLVIEDETDLKVNVKPNM 271
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP-----------------YLEEGSIKLVA 104
F +LK+ IDI+ + LE F+ ++ ++ +
Sbjct: 272 GKTSFVFNALKSGDIDIYPEFTGTVLETFLKENAKTHDPEEVYTQARDGLAKDFNMSYLK 331
Query: 105 ENLQGAKYMLAV-NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK 163
Y LAV + ++ D+ ++ D + K
Sbjct: 332 PMKYNNTYALAVSPEFAKENNLEKISDLGPVSDQVK---------AGFTLEFKDRSDGYK 382
Query: 164 FSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
+ L ++ ++ ++ + ++ + + L +++
Sbjct: 383 GIQDKYGLTFSNLKTMEPKLRYNAIKSGDINLLDAYSTDSELAQYKLKVLEDDQQLF--P 440
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++ + L+K P + + L + K + +M + N + V + L+
Sbjct: 441 PYQGAPLMLTKTLEKYPELKKPLNKLAGKITDDEMRKMNYEVNVNGKSAYTVAKDYLKD 499
>gi|307289632|ref|ZP_07569576.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0109]
gi|306499446|gb|EFM68819.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0109]
gi|315164548|gb|EFU08565.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX1302]
Length = 505
Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 38/283 (13%), Positives = 90/283 (31%), Gaps = 34/283 (12%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGID 77
+ + + A + M ++EE + +K + +LK+ ID
Sbjct: 229 QTSSKEKQLTIAGKLGAEPDIIINMYKALIEENSDIQVTLKPNFGKTTFLYNALKSDEID 288
Query: 78 IFMGYWYPSLEKFIAPYLE------------------EGSIKLVAENLQGAKYMLAVNDV 119
++ + +E F+ + + ++ L+ Y +AV
Sbjct: 289 LYPEFTGTVIETFLKNPPQLDNQPQVVYEAARAGLKKQENLTLLKPMRYENTYAVAVKRS 348
Query: 120 GFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+K+ D+ K +L +D + K + + L +
Sbjct: 349 FAKAHQLKTISDLQKISNQLK---------AGFTLEFIDRQDGYKGLQEKYHLNLNVQSM 399
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+ + N V ++ ++ L + + F ++++ L+K
Sbjct: 400 EPALRYQAINNGEVNVIDAYSTDSELRQYDLVTLED--DQALFPPYQGAPLIKTATLEKY 457
Query: 239 PNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
P ++ +L + K S +EM + QD V + L+
Sbjct: 458 PELAEILNKLAGKISEEEMSEMNYQVNVEGQDPSIVAKDYLKE 500
>gi|29375273|ref|NP_814426.1| glycine betaine/carnitine/choline ABC transporter, glycine
betaine/carnitine/choline-binding protein [Enterococcus
faecalis V583]
gi|227554789|ref|ZP_03984836.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Enterococcus faecalis HH22]
gi|229548621|ref|ZP_04437346.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Enterococcus faecalis ATCC 29200]
gi|255971135|ref|ZP_05421721.1| ABC transporter permease [Enterococcus faecalis T1]
gi|255973759|ref|ZP_05424345.1| ABC transporter permease [Enterococcus faecalis T2]
gi|256761446|ref|ZP_05502026.1| ABC transporter permease [Enterococcus faecalis T3]
gi|256964486|ref|ZP_05568657.1| ABC transporter membrane-spanning permease [Enterococcus faecalis
HIP11704]
gi|257077549|ref|ZP_05571910.1| ABC transporter membrane-spanning permease [Enterococcus faecalis
JH1]
gi|257420938|ref|ZP_05597928.1| ABC glycine betaine/carnitine/choline transporter [Enterococcus
faecalis X98]
gi|294780459|ref|ZP_06745824.1| ABC transporter, substrate-binding protein, QAT family
[Enterococcus faecalis PC1.1]
gi|300861927|ref|ZP_07108007.1| ABC transporter, substrate-binding protein, QAT family
[Enterococcus faecalis TUSoD Ef11]
gi|307272487|ref|ZP_07553740.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0855]
gi|307284563|ref|ZP_07564725.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0860]
gi|312900268|ref|ZP_07759580.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0470]
gi|312953059|ref|ZP_07771909.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0102]
gi|29342732|gb|AAO80497.1| glycine betaine/carnitine/choline ABC transporter, glycine
betaine/carnitine/choline-binding protein [Enterococcus
faecalis V583]
gi|227176088|gb|EEI57060.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Enterococcus faecalis HH22]
gi|229306252|gb|EEN72248.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Enterococcus faecalis ATCC 29200]
gi|255962153|gb|EET94629.1| ABC transporter permease [Enterococcus faecalis T1]
gi|255966631|gb|EET97253.1| ABC transporter permease [Enterococcus faecalis T2]
gi|256682697|gb|EEU22392.1| ABC transporter permease [Enterococcus faecalis T3]
gi|256954982|gb|EEU71614.1| ABC transporter membrane-spanning permease [Enterococcus faecalis
HIP11704]
gi|256985579|gb|EEU72881.1| ABC transporter membrane-spanning permease [Enterococcus faecalis
JH1]
gi|257162762|gb|EEU92722.1| ABC glycine betaine/carnitine/choline transporter [Enterococcus
faecalis X98]
gi|294452458|gb|EFG20895.1| ABC transporter, substrate-binding protein, QAT family
[Enterococcus faecalis PC1.1]
gi|295114103|emb|CBL32740.1| Periplasmic glycine betaine/choline-binding (lipo)protein of an
ABC-type transport system (osmoprotectant binding
protein) [Enterococcus sp. 7L76]
gi|300848452|gb|EFK76209.1| ABC transporter, substrate-binding protein, QAT family
[Enterococcus faecalis TUSoD Ef11]
gi|306503240|gb|EFM72494.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0860]
gi|306510772|gb|EFM79789.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0855]
gi|310628968|gb|EFQ12251.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0102]
gi|311292629|gb|EFQ71185.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0470]
gi|315031419|gb|EFT43351.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0017]
gi|315144503|gb|EFT88519.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX2141]
gi|315154029|gb|EFT98045.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0031]
gi|315156673|gb|EFU00690.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0043]
gi|315166869|gb|EFU10886.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX1341]
gi|315170759|gb|EFU14776.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX1342]
gi|315173991|gb|EFU18008.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX1346]
gi|315575303|gb|EFU87494.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis
TX0309B]
gi|315581470|gb|EFU93661.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis
TX0309A]
Length = 505
Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 38/283 (13%), Positives = 90/283 (31%), Gaps = 34/283 (12%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGID 77
+ + + A + M ++EE + +K + +LK+ ID
Sbjct: 229 QTSSKEKQLTIAGKLGAEPDIIINMYKALIEENSDIQVTLKPNFGKTTFLYNALKSDEID 288
Query: 78 IFMGYWYPSLEKFIAPYLE------------------EGSIKLVAENLQGAKYMLAVNDV 119
++ + +E F+ + + ++ L+ Y +AV
Sbjct: 289 LYPEFTGTVIETFLKNPPQLDNQPQVVYEAARAGLKKQENLTLLKPMRYENTYAVAVKRS 348
Query: 120 GFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+K+ D+ K +L +D + K + + L +
Sbjct: 349 FAKAHQLKTISDLQKISNQLK---------AGFTLEFIDRQDGYKGLQEKYHLNLNVQSM 399
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+ + N V ++ ++ L + + F ++++ L+K
Sbjct: 400 EPALRYQAINNGEVNVIDAYSTDSELRQYDLVTLED--DQALFPPYQGAPLIKTATLEKY 457
Query: 239 PNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
P ++ +L + K S +EM + QD V + L+
Sbjct: 458 PELAEILNKLAGKISEEEMSEMNYQVNVEGQDPSIVAKDYLKE 500
>gi|170735078|ref|YP_001774192.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia cenocepacia MC0-3]
gi|169821116|gb|ACA95697.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia cenocepacia MC0-3]
Length = 303
Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 38/306 (12%), Positives = 84/306 (27%), Gaps = 32/306 (10%)
Query: 1 MYKILAVC--LFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
+++IL L + A + +T+ +TS L GY
Sbjct: 3 LHRILRSLARLCAASALCVAASTPAFAAKLVLGAKNFTEQYVLAELTSQYLRSR-GYDVE 61
Query: 59 IKLL-AVPVTFRSLKNKGIDIFMGYWYPS---------------LEKFIAPYLEEGSIKL 102
++ + +L+N D+ Y + + + + +
Sbjct: 62 VRAGLGSTLARSALENGQFDLMWDYTGTAALVYNKIQDKLSPEEMYRRVKALDVPRGLVW 121
Query: 103 VAENLQGAKYMLAVNDVGFALG----IKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILD 157
+ + Y + + + + K ++G++ +
Sbjct: 122 LDASPLNDTYAIGLPSQLAQATGIRTVSQLAEHLKTDPAAKHYVFGMDAEFANRPDGLKP 181
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
++ +L + + NN + L + I L +
Sbjct: 182 LLAAYGMQFSRAQLKQMDPG----LVYTALHNNQLKIGLVYTTDGRVKGFGIVPLED--D 235
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRT 275
F + VVR L P ++ L + M K + + + + V
Sbjct: 236 RHFFPPYNATPVVRQGTLAHNPKLAAQLNALSAALDNDAMQAMAKAVDLDGKSPRDVADE 295
Query: 276 MLRTHP 281
LRTHP
Sbjct: 296 FLRTHP 301
>gi|169832593|ref|YP_001695228.1| choline transporter [Streptococcus pneumoniae Hungary19A-6]
gi|168995095|gb|ACA35707.1| choline transporter [Streptococcus pneumoniae Hungary19A-6]
Length = 506
Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 39/303 (12%), Positives = 91/303 (30%), Gaps = 35/303 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDAD-SCTPVRFADTGWTDIAATTAMTSVILEEI--LGYKT 57
++ A+ L S S A A + A + M +++EE +
Sbjct: 209 IFSGFALVALLLGLSYSPALLAQKEKENLIIAGKIGPEPEILANMYKLLIEENTSMTATV 268
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------EGS 99
+ +LK IDI+ + E + P + +
Sbjct: 269 KPNFGTTSFLYEALKKGDIDIYPEFTGTVTESLLQPSPKVSHEPEQVYQVARDGIAKQDH 328
Query: 100 IKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ + Y +AV G+K+ D+ K + +L D
Sbjct: 329 LAYLKPMSYQNTYAVAVPKKIAQEYGLKTISDLKKVEGQLK---------AGFTLEFNDR 379
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ NK + L + + ++ + ++ ++ L +
Sbjct: 380 EDGNKGLQSMYGLNLNVATMQPALRYQAIQSGDIQITDAYSTDAELERYDLQVLED--DK 437
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F +++ L K P + R+L + K + + +++ + + + V +
Sbjct: 438 QLFPPYQGAPLMKEALLKKHPELERVLNTLAGKITESQMSQLNYQVGVEGKSAKQVAKEF 497
Query: 277 LRT 279
L+
Sbjct: 498 LQE 500
>gi|47095373|ref|ZP_00232983.1| glycine betaine/carnitine/choline ABC transporter [Listeria
monocytogenes str. 1/2a F6854]
gi|254827710|ref|ZP_05232397.1| glycine betaine/carnitine/choline ABC transporter [Listeria
monocytogenes FSL N3-165]
gi|254898412|ref|ZP_05258336.1| hypothetical protein LmonJ_01315 [Listeria monocytogenes J0161]
gi|254912097|ref|ZP_05262109.1| glycine betaine/carnitine/choline ABC transporter [Listeria
monocytogenes J2818]
gi|254936424|ref|ZP_05268121.1| glycine betaine/carnitine/choline ABC transporter [Listeria
monocytogenes F6900]
gi|47016194|gb|EAL07117.1| glycine betaine/carnitine/choline ABC transporter [Listeria
monocytogenes str. 1/2a F6854]
gi|258600089|gb|EEW13414.1| glycine betaine/carnitine/choline ABC transporter [Listeria
monocytogenes FSL N3-165]
gi|258609016|gb|EEW21624.1| glycine betaine/carnitine/choline ABC transporter [Listeria
monocytogenes F6900]
gi|293590065|gb|EFF98399.1| glycine betaine/carnitine/choline ABC transporter [Listeria
monocytogenes J2818]
Length = 504
Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 38/299 (12%), Positives = 91/299 (30%), Gaps = 34/299 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
++ + LT I A + A + M +++E+ K N+K
Sbjct: 212 TISAGILLTAAIIVVPYFASDKKEITIAGKLGAEPEILINMYKLVIEDETDLKVNVKPNM 271
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP-----------------YLEEGSIKLVA 104
F +LK+ IDI+ + LE F+ ++ + +
Sbjct: 272 GKTSFVFNALKSGDIDIYPEFTGTVLETFLKENAKTHDPEEVYTQARDGLAQDFDMTYLK 331
Query: 105 ENLQGAKYMLAV-NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK 163
Y LAV + ++ D+ ++ D + K
Sbjct: 332 PMKYNNTYALAVSPEFAKENNLEKISDLGPVSDQVK---------AGFTLEFKDRSDGYK 382
Query: 164 FSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
+ L ++ ++ ++ + ++ + + L +++
Sbjct: 383 GIQDKYGLTFSNLKTMEPKLRYNAIKSGDINLLDAYSTDSELAQYKLKVLEDDQQLF--P 440
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++ + LDK P + + L + K + +M + N + V + L+
Sbjct: 441 PYQGAPLMLTKTLDKYPELKKPLNKLAGKITDDEMRKMNYEVNVNGKSAYTVAKDYLKD 499
>gi|229546503|ref|ZP_04435228.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Enterococcus faecalis TX1322]
gi|256854465|ref|ZP_05559829.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecalis T8]
gi|307277039|ref|ZP_07558145.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX2134]
gi|307289946|ref|ZP_07569875.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0411]
gi|229308403|gb|EEN74390.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Enterococcus faecalis TX1322]
gi|256710025|gb|EEU25069.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecalis T8]
gi|306499012|gb|EFM68501.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0411]
gi|306506283|gb|EFM75447.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX2134]
gi|315030587|gb|EFT42519.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX4000]
gi|315159708|gb|EFU03725.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0312]
gi|323479859|gb|ADX79298.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Enterococcus faecalis 62]
Length = 505
Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 38/283 (13%), Positives = 90/283 (31%), Gaps = 34/283 (12%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGID 77
+ + + A + M ++EE + +K + +LK+ ID
Sbjct: 229 QTSSKEKQLTIAGKLGAEPDIIINMYKALIEENSDIQVTLKPNFGKTTFLYNALKSDEID 288
Query: 78 IFMGYWYPSLEKFIAPYLE------------------EGSIKLVAENLQGAKYMLAVNDV 119
++ + +E F+ + + ++ L+ Y +AV
Sbjct: 289 LYPEFTGTVIETFLKNPPQLDNQPQVVYEAARAGLKNQENLTLLKPMRYENTYAVAVKRS 348
Query: 120 GFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+K+ D+ K +L +D + K + + L +
Sbjct: 349 FAKAHQLKTISDLQKISNQLK---------AGFTLEFIDRQDGYKGLQEKYHLNLNVQSM 399
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+ + N V ++ ++ L + + F ++++ L+K
Sbjct: 400 EPALRYQAINNGEVNVIDAYSTDSELKQYDLVTLED--DQALFPPYQGAPLIKTATLEKY 457
Query: 239 PNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
P ++ +L + K S +EM + QD V + L+
Sbjct: 458 PELAEILNKLAGKISEEEMSEMNYQVNVEGQDPSIVAKDYLKE 500
>gi|46907650|ref|YP_014039.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Listeria
monocytogenes serotype 4b str. F2365]
gi|226224023|ref|YP_002758130.1| glycine betaine/carnitine/choline ABC transporter (membrane
protein) [Listeria monocytogenes Clip81459]
gi|254992616|ref|ZP_05274806.1| glycine betaine/carnitine/choline ABC transporter (membrane
protein) [Listeria monocytogenes FSL J2-064]
gi|46880918|gb|AAT04216.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Listeria
monocytogenes serotype 4b str. F2365]
gi|225876485|emb|CAS05194.1| Putative glycine betaine/carnitine/choline ABC transporter
(membrane protein) [Listeria monocytogenes serotype 4b
str. CLIP 80459]
Length = 504
Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 37/299 (12%), Positives = 92/299 (30%), Gaps = 34/299 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
++ + LT I A + A + M +++E+ K N+K
Sbjct: 212 TISAGILLTAAIIVVPYFASDKKEITIAGKLGAEPEILINMYKLVIEDETDLKVNVKPNM 271
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP-----------------YLEEGSIKLVA 104
F +LK+ IDI+ + LE F+ ++ ++ +
Sbjct: 272 GKTSFVFNALKSGDIDIYPEFTGTVLETFLKENAKTHDPEEVYTQARDGLAKDFNMSYLK 331
Query: 105 ENLQGAKYMLAV-NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK 163
Y LAV + ++ D+ ++ D + K
Sbjct: 332 PMKYNNTYALAVSPEFAKENNLEKISDLGPVSDQVK---------AGFTLEFKDRSDGYK 382
Query: 164 FSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
+ L ++ ++ ++ + ++ + + L +++
Sbjct: 383 GIQDKYGLTFSNLKTMEPKLRYNAIKSGDINLLDAYSTDSELAQYKLKVLEDDQQLF--P 440
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++ + L+K P + + L + K + +M + N + V + L+
Sbjct: 441 PYQGAPLMLTKTLEKYPELKKPLNKLAGKITDDEMRKMNYEVNVNGKSAYTVAKDYLKD 499
>gi|325689872|gb|EGD31876.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Streptococcus sanguinis
SK115]
Length = 506
Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 30/303 (9%), Positives = 90/303 (29%), Gaps = 39/303 (12%)
Query: 3 KILAVCLFLTTFSISYARDAD-----SCTPVRFADTGWTDIAATTAMTSVILEEILG--Y 55
+ + + + + + A + M +++EE
Sbjct: 207 RTVFTAFAVLILGLGASYTPSLLPKQEKDHLVIAGKLGPEPEILMNMYKLLIEENTDMTV 266
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------E 97
+++LK +DI+ + + P + +
Sbjct: 267 TVKPNFGKTDFLYQALKKGDVDIYPEFTGTITGTLLQPAPKVSNDAEEVFEAARDGIKKQ 326
Query: 98 GSIKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
++ L+ Y +AV +K+ D+ + +L A N+
Sbjct: 327 DNLVLLNHMAYQNTYAIAVPKSIAKEYNLKTISDLKAVQDKLKAGFTL--EFNDREDGNK 384
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ + +L + + + ++ + ++ + ++ L
Sbjct: 385 GLQSVYGLNLNVSTMEP-------ALRYQAIQSGDIQITDAYSTDAELARYDLQVLED-- 435
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F +++++ L+K P + +L + K + + ++M + + + V R
Sbjct: 436 DKHLFPPYQGAPLLKAELLEKHPELEGILNKLSGKITESQMSQMNYQVGIEGKKAEAVAR 495
Query: 275 TML 277
L
Sbjct: 496 DYL 498
>gi|257083604|ref|ZP_05577965.1| ABC transporter membrane-spanning permease [Enterococcus faecalis
Fly1]
gi|256991634|gb|EEU78936.1| ABC transporter membrane-spanning permease [Enterococcus faecalis
Fly1]
gi|327534265|gb|AEA93099.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Enterococcus faecalis OG1RF]
Length = 505
Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 38/283 (13%), Positives = 90/283 (31%), Gaps = 34/283 (12%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGID 77
+ + + A + M ++EE + +K + +LK+ ID
Sbjct: 229 QTSSKEKQLTIAGKLGAEPDIIINMYKALIEENSDIQVTLKPNFGKTTFLYNALKSDEID 288
Query: 78 IFMGYWYPSLEKFIAPYLE------------------EGSIKLVAENLQGAKYMLAVNDV 119
++ + +E F+ + + ++ L+ Y +AV
Sbjct: 289 LYPEFTGTVIETFLKNPPQLDNQPQVVYEAARAGLKKQENLTLLKPMRYENTYAVAVKRS 348
Query: 120 GFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+K+ D+ K +L +D + K + + L +
Sbjct: 349 FAKAHQLKTISDLQKISNQLK---------AGFTLEFIDRQDGYKGLQEKYHLNLNVQSM 399
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+ + N V ++ ++ L + + F ++++ L+K
Sbjct: 400 EPALRYQAINNGEVNVIDAYSTDSELRQYDLVTLED--DQALFPPYQGAPLIKTATLEKY 457
Query: 239 PNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
P ++ +L + K S +EM + QD V + L+
Sbjct: 458 PELAEILNKLAGKISEEEMSEMNYQVNVEGQDPSIVAKDYLKE 500
>gi|256957453|ref|ZP_05561624.1| ABC transporter membrane-spanning permease [Enterococcus faecalis
DS5]
gi|307269709|ref|ZP_07551039.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX4248]
gi|256947949|gb|EEU64581.1| ABC transporter membrane-spanning permease [Enterococcus faecalis
DS5]
gi|306513819|gb|EFM82421.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX4248]
gi|315034499|gb|EFT46431.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0027]
gi|315147009|gb|EFT91025.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX4244]
gi|329576824|gb|EGG58309.1| ABC transporter, substrate-binding protein, QAT family
[Enterococcus faecalis TX1467]
Length = 505
Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 38/283 (13%), Positives = 90/283 (31%), Gaps = 34/283 (12%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGID 77
+ + + A + M ++EE + +K + +LK+ ID
Sbjct: 229 QTSSKEKQLTIAGKLGAEPDIIINMYKALIEENSDIQVTLKPNFGKTTFLYNALKSDEID 288
Query: 78 IFMGYWYPSLEKFIAPYLE------------------EGSIKLVAENLQGAKYMLAVNDV 119
++ + +E F+ + + ++ L+ Y +AV
Sbjct: 289 LYPEFTGTVIETFLKNPPQLDNQPQVVYEAARAGLKKQENLTLLKPMRYENTYAVAVKRS 348
Query: 120 GFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+K+ D+ K +L +D + K + + L +
Sbjct: 349 FAKAHQLKTISDLQKISNQLK---------AGFTLEFIDRQDGYKGLQEKYHLNLNVQSM 399
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+ + N V ++ ++ L + + F ++++ L+K
Sbjct: 400 EPALRYQAINNGEVNVIDAYSTDSELKQYDLVTLED--DQALFPPYQGAPLIKTATLEKY 457
Query: 239 PNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
P ++ +L + K S +EM + QD V + L+
Sbjct: 458 PELAEILNKLAGKISEEEMSEMNYQVNVEGQDPSIVAKDYLKE 500
>gi|308067985|ref|YP_003869590.1| glycine/betaine-binding protein precursor [Paenibacillus polymyxa
E681]
gi|305857264|gb|ADM69052.1| Glycine betaine-binding protein precursor [Paenibacillus polymyxa
E681]
Length = 618
Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 36/161 (22%), Positives = 66/161 (40%), Gaps = 4/161 (2%)
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
+E+G KI GI+ G + I + S ++L+E S A + + + + P +
Sbjct: 326 EEVGYKIIGIDAGAGIMKSTAKAIQDYNLSD--WKLVEGSGAAMTATLDKAIKAKKPIII 383
Query: 196 LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
W PH + + ++ YL ++ G E ++T+ R P LK K++
Sbjct: 384 TGWTPHWMFNKYDLKYLEDPKKSYGEAEG-IHTIARKGLQQDAPIAYEFLKRFKWTPEDM 442
Query: 256 NEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDG 296
EMM I + + H D ++ W G+ +G
Sbjct: 443 GEMMVAIQA-GTSPEQAAKDWAEKHADKVQEWTHGLQHVNG 482
Score = 72.2 bits (175), Expect = 9e-11, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 47/139 (33%), Gaps = 12/139 (8%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYW 83
+ + + W A+T + S ILE LGYK + + + + +D W
Sbjct: 481 NGDAFKLSYVAWDSEIASTNLLSYILENKLGYKVTALQVEAGPMWTGVASGDVDASPAAW 540
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD-----------IA 132
P ++ + + N+ G K L V I QD
Sbjct: 541 LPLTHADYWAKYKD-KLDDLGANMSGVKTGLVVPAYMDVKSITDLQDNGAEAAPASASTE 599
Query: 133 KYKKELGAKIYGIEPGNEG 151
+ KE+G +I G + G
Sbjct: 600 DFGKEVGYRIVGTDLGAGH 618
>gi|323351745|ref|ZP_08087399.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Streptococcus sanguinis
VMC66]
gi|322122231|gb|EFX93957.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Streptococcus sanguinis
VMC66]
Length = 506
Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 30/303 (9%), Positives = 90/303 (29%), Gaps = 39/303 (12%)
Query: 3 KILAVCLFLTTFSISYARDAD-----SCTPVRFADTGWTDIAATTAMTSVILEEILG--Y 55
+ + + + + + A + M +++EE
Sbjct: 207 RTVFTAFAVLILGLGASYTPSFLPKQEKDHLVIAGKLGPEPEILMNMYKLLIEENTDMTV 266
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------E 97
+++LK +DI+ + + P + +
Sbjct: 267 TVKPNFGKTDFLYQALKKGDVDIYPEFTGTITGTLLQPAPKVSNDAEEVFEAARDGIKKQ 326
Query: 98 GSIKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
++ L+ Y +AV +K+ D+ + +L A N+
Sbjct: 327 DNLVLLNHMAYQNTYAIAVPKSIAKEYNLKTISDLKTVQDKLKAGFTL--EFNDREDGNK 384
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ + +L + + + ++ + ++ + ++ L
Sbjct: 385 GLQSVYGLNLNVSTMEP-------ALRYQAIQSGDIQITDAYSTDAELARYDLQVLED-- 435
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F +++++ L+K P + +L + K + + ++M + + + V R
Sbjct: 436 DKHLFPPYQGAPLMKAELLEKHPELEGVLNKLAGKITESQMSQMNYQVGIEGKKAEAVAR 495
Query: 275 TML 277
L
Sbjct: 496 DYL 498
>gi|257080920|ref|ZP_05575281.1| ABC transporter membrane-spanning permease [Enterococcus faecalis
E1Sol]
gi|256988950|gb|EEU76252.1| ABC transporter membrane-spanning permease [Enterococcus faecalis
E1Sol]
Length = 505
Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 38/283 (13%), Positives = 90/283 (31%), Gaps = 34/283 (12%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGID 77
+ + + A + M ++EE + +K + +LK+ ID
Sbjct: 229 QTSSKEKQLTIAGKLGAEPDIIINMYKALIEENSDIQVTLKPNFGKTTFLYNALKSDEID 288
Query: 78 IFMGYWYPSLEKFIAPYLE------------------EGSIKLVAENLQGAKYMLAVNDV 119
++ + +E F+ + + ++ L+ Y +AV
Sbjct: 289 LYPEFTGTVIETFLKNPPQLDNQPQVVYEAARAGLKKQENLTLLKPMRYENTYAVAVKRS 348
Query: 120 GFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+K+ D+ K +L +D + K + + L +
Sbjct: 349 FAKAHQLKTISDLQKISNQLK---------AGFTLEFIDRQDGYKGLQEKYHLNLNVQSM 399
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+ + N V ++ ++ L + + F ++++ L+K
Sbjct: 400 EPALRYQAINNGEVNVIDAYSTDSELKQYDLVTLED--DQALFPPYQGAPLIKTATLEKY 457
Query: 239 PNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
P ++ +L + K S +EM + QD V + L+
Sbjct: 458 PELAEILNKLAGKISEEEMSEMNYQVNVEGQDPSIVAKDYLKE 500
>gi|256959807|ref|ZP_05563978.1| ABC transporter membrane-spanning permease [Enterococcus faecalis
Merz96]
gi|293384995|ref|ZP_06630829.1| choline transporter [Enterococcus faecalis R712]
gi|293389265|ref|ZP_06633727.1| choline transporter [Enterococcus faecalis S613]
gi|312905984|ref|ZP_07764997.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis DAPTO
512]
gi|312909330|ref|ZP_07768186.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Enterococcus faecalis DAPTO
516]
gi|256950303|gb|EEU66935.1| ABC transporter membrane-spanning permease [Enterococcus faecalis
Merz96]
gi|291077673|gb|EFE15037.1| choline transporter [Enterococcus faecalis R712]
gi|291081429|gb|EFE18392.1| choline transporter [Enterococcus faecalis S613]
gi|310627979|gb|EFQ11262.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis DAPTO
512]
gi|311290354|gb|EFQ68910.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Enterococcus faecalis DAPTO
516]
Length = 505
Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 38/283 (13%), Positives = 90/283 (31%), Gaps = 34/283 (12%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGID 77
+ + + A + M ++EE + +K + +LK+ ID
Sbjct: 229 QTSSKEKQLTIAGKLGAEPDIIINMYKALIEENSDIQVTLKPNFGKTTFLYNALKSDEID 288
Query: 78 IFMGYWYPSLEKFIAPYLE------------------EGSIKLVAENLQGAKYMLAVNDV 119
++ + +E F+ + + ++ L+ Y +AV
Sbjct: 289 LYPEFTGTVIETFLKNPPQLDNQPQVVYEAARAGLKKQENLTLLKPMRYENTYAVAVKRS 348
Query: 120 GFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+K+ D+ K +L +D + K + + L +
Sbjct: 349 FAKAHQLKTISDLQKISNQLK---------AGFTLEFIDRQDGYKGLQEKYHLNLNVQSM 399
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+ + N V ++ ++ L + + F ++++ L+K
Sbjct: 400 EPALRYQAINNGEVNVIDAYSTDSELKQYDLVTLED--DQALFPPYQGAPLIKTATLEKY 457
Query: 239 PNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
P ++ +L + K S +EM + QD V + L+
Sbjct: 458 PELAEILNKLAGKISEEEMSEMNYQVNVEGQDPSIVAKDYLKE 500
>gi|257418290|ref|ZP_05595284.1| ABC transporter [Enterococcus faecalis T11]
gi|257160118|gb|EEU90078.1| ABC transporter [Enterococcus faecalis T11]
Length = 505
Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 38/283 (13%), Positives = 90/283 (31%), Gaps = 34/283 (12%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGID 77
+ + + A + M ++EE + +K + +LK+ ID
Sbjct: 229 QTSSKEKQLTIAGKLGAEPDIIINMYKALIEENSDIQVTLKPNFGKTTFLYNALKSDEID 288
Query: 78 IFMGYWYPSLEKFIAPYLE------------------EGSIKLVAENLQGAKYMLAVNDV 119
++ + +E F+ + + ++ L+ Y +AV
Sbjct: 289 LYPEFTGTVIETFLKNPPQLDNQPQVVYEAARAGLKKQENLTLLKPMRYENTYAVAVKRS 348
Query: 120 GFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+K+ D+ K +L +D + K + + L +
Sbjct: 349 FAKAHQLKTISDLQKISNQLK---------AGFTLEFIDRQDGYKGLQEKYHLNMNVQSM 399
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+ + N V ++ ++ L + + F ++++ L+K
Sbjct: 400 EPALRYQAINNGEVNVIDAYSTDSELRQYDLVTLED--DQALFPPYQGAPLIKTATLEKY 457
Query: 239 PNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
P ++ +L + K S +EM + QD V + L+
Sbjct: 458 PELAEILNKLAGKISEEEMSEMNYQVNVEGQDPSIVAKDYLKE 500
>gi|148998724|ref|ZP_01826162.1| choline transporter [Streptococcus pneumoniae SP11-BS70]
gi|307068475|ref|YP_003877441.1| ABC transporter periplasmic glycine betaine/choline-binding
(lipo)protein [Streptococcus pneumoniae AP200]
gi|147755418|gb|EDK62467.1| choline transporter [Streptococcus pneumoniae SP11-BS70]
gi|306410012|gb|ADM85439.1| periplasmic glycine betaine/choline-binding (lipo)protein of an
ABC-type transport system [Streptococcus pneumoniae
AP200]
Length = 506
Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 34/305 (11%), Positives = 87/305 (28%), Gaps = 39/305 (12%)
Query: 3 KILAVCLFLTTFSISYARDAD-----SCTPVRFADTGWTDIAATTAMTSVILEEI--LGY 55
+ + L + + + A + M +++EE +
Sbjct: 207 RTIFSGFALVALLLGLSYSPALLVQKEKENLVIAGKIGPEPEILANMYKLLIEENTSMTA 266
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------E 97
+ +LK IDI+ + E + P + +
Sbjct: 267 TVKPNFGKTSFLYEALKKGDIDIYPEFTGTVTESLLQPSPKVSHEPEQVYQVARDGIAKQ 326
Query: 98 GSIKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
+ + Y +AV G+K+ D+ K + +L
Sbjct: 327 DHLAYLKPMSYQNTYAVAVPKKIAQEYGLKTISDLKKVEGQLK---------AGFTLEFN 377
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
D + NK + L + + ++ + ++ ++ L
Sbjct: 378 DREDGNKGLQSMYGLNLNVATMEPALRYQAIQSGDIQITDAYSTDAELERYDLQVLED-- 435
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F +++ L K P + R+L + K + + +++ + + + V +
Sbjct: 436 DKQLFPPYQGAPLMKEALLKKHPELERVLNTLAGKITESQMSQLNYQVGVEGKSAKQVAK 495
Query: 275 TMLRT 279
L+
Sbjct: 496 EFLQE 500
>gi|315149413|gb|EFT93429.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0012]
Length = 505
Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats.
Identities = 38/283 (13%), Positives = 90/283 (31%), Gaps = 34/283 (12%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGID 77
+ + + A + M ++EE + +K + +LK+ ID
Sbjct: 229 QTSSKEKQLTIAGKLGAEPDIIINMYKALIEENSDIQVTLKPNFGKTTFLYNALKSDEID 288
Query: 78 IFMGYWYPSLEKFIAPYLE------------------EGSIKLVAENLQGAKYMLAV-ND 118
++ + +E F+ + + ++ L+ Y +AV
Sbjct: 289 LYPEFTGTVIETFLKNPPQLDNQPQVVYEAARAGLKKQENLTLLKPMRYENTYAVAVKRS 348
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+K+ D+ K +L +D + K + + L +
Sbjct: 349 FAKEHQLKTISDLQKISNQLK---------AGFTLEFIDRQDGYKGLQEKYHLNLNVQSM 399
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+ + N V ++ ++ L + + F ++++ L+K
Sbjct: 400 EPALRYQAINNGEVNVIDAYSTDSELKQYDLVTLED--DQALFPPYQGAPLIKTATLEKY 457
Query: 239 PNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
P ++ +L + K S +EM + QD V + L+
Sbjct: 458 PELAEILNKLAGKISEEEMSEMNYQVNVEGQDPSIVAKDYLKE 500
>gi|297208553|ref|ZP_06924982.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, membrane protein [Staphylococcus
aureus subsp. aureus ATCC 51811]
gi|296886808|gb|EFH25712.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, membrane protein [Staphylococcus
aureus subsp. aureus ATCC 51811]
Length = 504
Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats.
Identities = 43/303 (14%), Positives = 92/303 (30%), Gaps = 35/303 (11%)
Query: 2 YKIL---AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
K+L V + + +I+ A + A ++ + T M +++EE
Sbjct: 207 KKLLMTLGVIVMIIILAIAIPMFAQKGDKITLAGKLGSEPSIITNMYKILIEEETKNTVE 266
Query: 59 IK--LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPY-----------------LEEGS 99
+K + F +LK+ ID ++ + L + ++
Sbjct: 267 VKDGMGKTAFLFNALKSDDIDGYLEFTGTVLGELTKEPLKSKEEKKVYEQAKQSLEKKYQ 326
Query: 100 IKLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ ++ Y LAV I++ D+ K K +L N+ +
Sbjct: 327 MTMLKPMKYNNTYALAVKRDFAKQHNIRTIGDLNKVKDQLKPGFTL--EFNDRPDGYKAV 384
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+L R +E + + ++ ++ L +
Sbjct: 385 QKAYNLNLDNIRTMEPKLR------YQAINKGNINLIDAYSTDAELKQYDMVVLKD--DK 436
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F + + +L K P I + L + K S M + +D V +
Sbjct: 437 HVFPPYQGAPLFKESFLKKHPEIKKPLNKLENKISYEDMQMMNYKVTVKNEDPYTVAKDY 496
Query: 277 LRT 279
L+
Sbjct: 497 LKA 499
>gi|257462371|ref|ZP_05626785.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding/permease protein
[Fusobacterium sp. D12]
Length = 213
Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats.
Identities = 54/223 (24%), Positives = 90/223 (40%), Gaps = 10/223 (4%)
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ L V + S+ D + W P+ + I+ + NL+GA+ L V
Sbjct: 1 MVPLDNGVMWESIATGEADAMVSAWLPTTHFSYYQKH-KTQIEDLGANLEGARIGLVVPV 59
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
A I A K E I GIEPG +LK + + +S A
Sbjct: 60 YMAANSI------ADLKHEANQVITGIEPGAGVVLSAQKAKKLYP-NLKNWEIQCSSTGA 112
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+++ N V SW PH + D ++ YL + + G GE +++T+VR +
Sbjct: 113 MTVSLKKAIENKKDIVITSWSPHWMFQDFDLKYLEDPKGVMGEGE-NIHTIVRKGLQQEK 171
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHP 281
P + ++LKN ++ E+M I N + + R + TH
Sbjct: 172 PEVYQILKNFHWTTQDIEEVMLDIK-NGMEVEKAARKWVDTHK 213
>gi|77459005|ref|YP_348511.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas fluorescens Pf0-1]
gi|77383008|gb|ABA74521.1| putative ABC transport system, substrate-binding protein
[Pseudomonas fluorescens Pf0-1]
Length = 325
Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats.
Identities = 50/316 (15%), Positives = 96/316 (30%), Gaps = 50/316 (15%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKG--IDIFMG 81
+ + + WT A + +++ L + VPV F + +D+
Sbjct: 2 AKDKIVIGEQNWTGAIAIQHILGEVIKSRLDGDVSYLAGDVPVLFSAAAKGDGSVDVLTD 61
Query: 82 YWYPSLEKFIAPYLEEGSIKLV--AENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
W P+ A Y+ G+ LV A G + + G+KS D+ K +
Sbjct: 62 IWLPNQSAAWAKYVTGGTRSLVPNAHPYAGEQGFYIPGYLQDKYGVKSIYDLKKPEVAKL 121
Query: 140 AKIYG--------IEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI 191
+ G G E + F+ F + +++++ +
Sbjct: 122 FEPVGGGKAELLVGPAGWESTYIGQIKAKDYGFAD-KFESVSTEASVTYAKLASAYKAQR 180
Query: 192 PAVFLSWEPHPINSDLNIHYLPGG------------------------------------ 215
VF ++ P I S ++ L
Sbjct: 181 GVVFYAYTPDWIFSAYDLRRLEEPAFDGYAQDNKKEDPLYKADGCWKFISPTVDPDWLNK 240
Query: 216 -EEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGR 274
F +A VY + + + P I+ L N A N +++ I KQ +
Sbjct: 241 SHITCAFPDAKVYVLASTALQKRAPKIAEFLHNFSIDPAQLNGLIQKIEKEKQPADVAAK 300
Query: 275 TMLRTHPDLLKNWLIG 290
++ +P + W G
Sbjct: 301 AWVQANPSTVDQWFAG 316
>gi|325694353|gb|EGD36266.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Streptococcus sanguinis
SK150]
Length = 508
Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats.
Identities = 32/303 (10%), Positives = 89/303 (29%), Gaps = 39/303 (12%)
Query: 3 KILAVCLFLTTFSISYARDAD-----SCTPVRFADTGWTDIAATTAMTSVILEEILG--Y 55
+ + + + + + A + M +++EE
Sbjct: 207 RTVFTAFAVLILGLGASYTPSLIPKQEKEHLVIAGKLGPEPEILMNMYKLLIEENTDMTV 266
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------E 97
+++LK IDI+ + + P + +
Sbjct: 267 TVKPNFGKTDFLYQALKKGDIDIYPEFTGTITGTLLQPTPKVSNDAEEVFEAARDGIKKQ 326
Query: 98 GSIKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
++ L+ + Y +AV +K+ D+ + +L
Sbjct: 327 DNLVLLNQMAYQNTYAIAVPKSIAKEYNLKTISDLKTVQDKLK---------AGFTLEFN 377
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
D + NK + L + + ++ + ++ + ++ L
Sbjct: 378 DREDGNKGLQSLYGLNLNVATMEPALRYQAIQSGDIQITDAYSTDAELARYDLQVLED-- 435
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F +++++ L+K P + +L + K + + ++M + + + V R
Sbjct: 436 DKHLFPPYQGAPLLKAELLEKHPELEGILNKLAGKITESQMSQMNYQVGIEGKKAEDVAR 495
Query: 275 TML 277
L
Sbjct: 496 DYL 498
>gi|328946046|gb|EGG40192.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Streptococcus sanguinis
SK1087]
Length = 506
Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats.
Identities = 32/303 (10%), Positives = 87/303 (28%), Gaps = 39/303 (12%)
Query: 3 KILAVCLFLTTFSISYARDAD-----SCTPVRFADTGWTDIAATTAMTSVILEEILG--Y 55
+ + + + + + A + M +++EE
Sbjct: 207 RTVFTAFAVLILGLGASYTPSLIPKQEKEHLVIAGKLGPEPEILMNMYKLLIEENTDMTV 266
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------E 97
+++LK IDI+ + + P + +
Sbjct: 267 TVKPNFGKTDFLYQALKKGDIDIYPEFTGTITGTLLQPAPKVSNDAEEVFEAARDGIKKQ 326
Query: 98 GSIKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
++ L+ Y +AV +K+ D+ + L
Sbjct: 327 DNLVLLNHMAYQNTYAIAVPKTIAKEYNLKTISDLKAVQDRLK---------AGFTLEFN 377
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
D + NK + L + + ++ + ++ + ++ L
Sbjct: 378 DREDGNKGLQSLYGLNLNVATMEPALRYQAIQSGDIQITDAYSTDAELARYDLQVLED-- 435
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F +++++ L+K P + +L + K + + ++M + + + V R
Sbjct: 436 DKHLFPPYQGAPLMKAELLEKHPELEGILNKLAGKITESQMSQMNYQVGIEGKRAEAVAR 495
Query: 275 TML 277
L
Sbjct: 496 DYL 498
>gi|257086036|ref|ZP_05580397.1| ABC transporter membrane-spanning permease [Enterococcus faecalis
D6]
gi|256994066|gb|EEU81368.1| ABC transporter membrane-spanning permease [Enterococcus faecalis
D6]
gi|315025722|gb|EFT37654.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX2137]
Length = 505
Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats.
Identities = 38/283 (13%), Positives = 90/283 (31%), Gaps = 34/283 (12%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGID 77
+ + + A + M ++EE + +K + +LK+ ID
Sbjct: 229 QTSSKEKQLTIAGKLGAEPDIIINMYKALIEENSDIQVTLKPNFGKTTFLYNALKSDEID 288
Query: 78 IFMGYWYPSLEKFIAPYLE------------------EGSIKLVAENLQGAKYMLAVNDV 119
++ + +E F+ + + ++ L+ Y +AV
Sbjct: 289 LYPEFTGTVIETFLKNPPQLDNQPQVVYEAARAGLKKQENLTLLKPMRYENTYAVAVKRS 348
Query: 120 GFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+K+ D+ K +L +D + K + + L +
Sbjct: 349 FAKAHQLKTISDLQKISNQLK---------AGFTLEFIDRQDGYKGLQEKYHLNLNVQSM 399
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+ + N V ++ ++ L + + F ++++ L+K
Sbjct: 400 EPALRYQAINNGEVNVIDAYSTDSELRQYDLVTLED--DQALFPPYQGAPLIKTATLEKY 457
Query: 239 PNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
P ++ +L + K S +EM + QD V + L+
Sbjct: 458 PELAEILNKLAGKISEEEMSEMNYQVNVEGQDPSIVAKDYLKE 500
>gi|16803462|ref|NP_464947.1| hypothetical protein lmo1422 [Listeria monocytogenes EGD-e]
gi|224499724|ref|ZP_03668073.1| hypothetical protein LmonF1_08539 [Listeria monocytogenes Finland
1988]
gi|224501636|ref|ZP_03669943.1| hypothetical protein LmonFR_03817 [Listeria monocytogenes FSL
R2-561]
gi|254829819|ref|ZP_05234474.1| hypothetical protein Lmon1_00620 [Listeria monocytogenes 10403S]
gi|284801808|ref|YP_003413673.1| hypothetical protein LM5578_1563 [Listeria monocytogenes 08-5578]
gi|284994950|ref|YP_003416718.1| hypothetical protein LM5923_1515 [Listeria monocytogenes 08-5923]
gi|16410851|emb|CAC99500.1| lmo1422 [Listeria monocytogenes EGD-e]
gi|284057370|gb|ADB68311.1| hypothetical protein LM5578_1563 [Listeria monocytogenes 08-5578]
gi|284060417|gb|ADB71356.1| hypothetical protein LM5923_1515 [Listeria monocytogenes 08-5923]
Length = 504
Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats.
Identities = 38/299 (12%), Positives = 91/299 (30%), Gaps = 34/299 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
++ + LT I A + A + M +++E+ K N+K
Sbjct: 212 TISAGILLTAAIIVVPYFASDKKEITIAGKLGAEPEILINMYKLVIEDETDLKVNVKPNM 271
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP-----------------YLEEGSIKLVA 104
F +LK+ IDI+ + LE F+ ++ + +
Sbjct: 272 GKTSFVFNALKSGDIDIYPEFTGTVLETFLKENAKTHDPEEVYTQARDGLAKDFDMTYLK 331
Query: 105 ENLQGAKYMLAV-NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK 163
Y LAV + ++ D+ ++ D + K
Sbjct: 332 PMKYNNTYALAVSPEFAKENNLEKISDLGPVSDQVK---------AGFTLEFKDRSDGYK 382
Query: 164 FSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
+ L ++ ++ ++ + ++ + + L +++
Sbjct: 383 GIQDKYGLTFSNLKTMEPKLRYNAIKSGDINLLDAYSTDSELAQYKLKVLEDDQQLF--P 440
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++ + LDK P + + L + K + +M + N + V + L+
Sbjct: 441 PYQGAPLMLTKTLDKYPELKKPLNKLAGKITDDEMRKMNYEVNVNGKSAYTVAKDYLKD 499
>gi|159896882|ref|YP_001543129.1| substrate-binding region of ABC-type glycine betaine transport
system [Herpetosiphon aurantiacus ATCC 23779]
gi|159889921|gb|ABX03001.1| Substrate-binding region of ABC-type glycine betaine transport
system [Herpetosiphon aurantiacus ATCC 23779]
Length = 313
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 49/292 (16%), Positives = 90/292 (30%), Gaps = 31/292 (10%)
Query: 7 VCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAV 64
T S S +R A +T+ M +++LE+ GYK K+ A
Sbjct: 25 AASSTTAPSSDPNPAPSSNQVIRIASKNFTEQFIVGEMYALLLEQA-GYKVERKIGLGAT 83
Query: 65 PVTFRSLKNKGIDIFMGYWYPS----------------LEKFIAPYLEEGSIKLVAENLQ 108
V +++ IDI+ Y E Y E+ I +
Sbjct: 84 DVAQAAMEKGEIDIYPEYTGTGLLTVLKLPTQTDPKAVYETVKKGYAEKYQIAWLDPAPM 143
Query: 109 GAKYMLAVNDVGFAL-GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
LA+ G GI + D+A K ++ G E + I + +
Sbjct: 144 NNTQALAMTKEGAQKFGIITISDMAA--KAGELRMIGPPEFQEREDGLPG-IQAKYGNFE 200
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
+ + V +++ ++ + L F +
Sbjct: 201 LKEYVPVDPGLK----YKGLVEGNADVVVAFGTDGEIANYGLVVLKDDRN--MFPPYQIA 254
Query: 228 TVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+VR LD P ++ LL + K A ++ + N + + V + L
Sbjct: 255 PLVRQSVLDANPKLAELLNALAPKLDDATMQQLNFEVSGNNRKYEDVAKEFL 306
>gi|194397596|ref|YP_002038450.1| ABC transporter substrate-binding/permease [Streptococcus
pneumoniae G54]
gi|194357263|gb|ACF55711.1| ABC transporter, substrate-binding/permease protein [Streptococcus
pneumoniae G54]
Length = 506
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 39/303 (12%), Positives = 91/303 (30%), Gaps = 35/303 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDAD-SCTPVRFADTGWTDIAATTAMTSVILEEI--LGYKT 57
++ A+ L S S A A + A + M +++EE +
Sbjct: 209 IFSGFALVALLLGLSYSPALLAQKEKENLVIAGKIGPEPEILANMYKLLIEENTSMTATV 268
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------EGS 99
+ +LK IDI+ + E + P + +
Sbjct: 269 KPNFGTTSFLYEALKKGDIDIYPEFTGTVTESLLQPSPKVSHEPEQVYQVARDGIAKQDH 328
Query: 100 IKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ + Y +AV G+K+ D+ K + +L D
Sbjct: 329 LAYLKPMSYQNTYAVAVPKKIAQEYGLKTISDLKKVEGQLK---------AGFTLEFNDR 379
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ NK + L + + ++ + ++ ++ L +
Sbjct: 380 EDGNKGLQSMYGLNLNVATMQPALRYQAIQSGDIQITDAYSTDAELERYDLQVLED--DK 437
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F +++ L K P + R+L + K + + +++ + + + V +
Sbjct: 438 QLFPPXQGAPLMKEALLKKHPELERVLNTLAGKITESQMSQLNYQVGVEGKSAKQVAKEF 497
Query: 277 LRT 279
L+
Sbjct: 498 LQE 500
>gi|15901688|ref|NP_346292.1| choline transporter [Streptococcus pneumoniae TIGR4]
gi|111658202|ref|ZP_01408897.1| hypothetical protein SpneT_02000636 [Streptococcus pneumoniae
TIGR4]
gi|5579396|gb|AAD45530.1|AF162656_1 choline transporter [Streptococcus pneumoniae]
gi|14973362|gb|AAK75932.1| choline transporter [Streptococcus pneumoniae TIGR4]
Length = 506
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 33/305 (10%), Positives = 89/305 (29%), Gaps = 39/305 (12%)
Query: 3 KILAVCLFLTTFSISYARDAD-----SCTPVRFADTGWTDIAATTAMTSVILEEI--LGY 55
+ + L + + + A + M +++EE +
Sbjct: 207 RTIFSGFALVALLLGLSYSPALLVQKEKENLVIAGKIGPEPEILANMYKLLIEENTSMTA 266
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------E 97
+ +LK IDI+ + E + P + +
Sbjct: 267 TVKPNFGKTSFLYEALKKGDIDIYPEFTGTVTESLLQPSPKVSHEPEQVYQVARDGIAKQ 326
Query: 98 GSIKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
+ + Y +AV G+K+ D+ K + +L A N+
Sbjct: 327 DHLAYLKPMSYQNTYAVAVPKKIAQEYGLKTISDLKKVEGQLKAGFTL--EFNDREDGNK 384
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ + +L + + + ++ + ++ ++ L
Sbjct: 385 GLQSMYGLNLNVATIEP-------ALRYQAIQSGDIQITDAYSTDAELERYDLQVLED-- 435
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F +++ L K P + R+L + K + + +++ + + + V +
Sbjct: 436 DKQLFPPYQGAPLMKEALLKKHPELERVLNTLAGKITESQMSQLNYQVGVEGKSAKQVAK 495
Query: 275 TMLRT 279
L+
Sbjct: 496 EFLQE 500
>gi|330895477|gb|EGH27789.1| glycine betaine/choline ABC transporter periplasmic
substrate-binding protein [Pseudomonas syringae pv.
japonica str. M301072PT]
gi|330981890|gb|EGH79993.1| glycine betaine/choline ABC transporter periplasmic
substrate-binding protein [Pseudomonas syringae pv.
aptata str. DSM 50252]
Length = 297
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 42/304 (13%), Positives = 92/304 (30%), Gaps = 32/304 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M +I A +R +T+ +T+ L Y I
Sbjct: 1 MKRI--CLFLGFALLFPALAQAAEKPLLRVGARVFTEQTILAELTAQYLRTK-NYDVQIT 57
Query: 61 LL-AVPVTFRSLKNKGIDIFMGYWYPSLEKF---------------IAPYLEEGSIKLVA 104
+ + ++ +D+ Y SL + + + + ++
Sbjct: 58 GGLGSNLARSAQESGQLDLLWEYTGVSLVSYNHIDEKLDSAQTYARVKEVDAKKGLIWLS 117
Query: 105 ENLQGAKYMLAVNDVGFALG--IKSYQDIAKYKKELGAKIYGIE---PGNEGNQRILDMI 159
+ Y LA+ + + D+AK K+ + + + + ++ M+
Sbjct: 118 PSKFNNTYALALPQKIADKYPQVNTMSDLAKVFKDEAKEGHLVALDTEFANRSDGLVGMV 177
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
+ +L + + +N L + + + L +
Sbjct: 178 KHYDMNLGRENTRQMDSG----LVYTALQNGQVFAGLVYTTDGRLNAFKLKVLQD--DKH 231
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
F + + V+R +YLDK P+I LLK + ++ + + V L
Sbjct: 232 YFPDYTAAPVIRQEYLDKHPDIETLLKPLADLLDNQTMIDLNARVDVGHESPSAVAADFL 291
Query: 278 RTHP 281
R HP
Sbjct: 292 RQHP 295
>gi|168491824|ref|ZP_02715967.1| ABC transporter membrane-spanning permease - choline transporter
[Streptococcus pneumoniae CDC0288-04]
gi|183573879|gb|EDT94407.1| ABC transporter membrane-spanning permease - choline transporter
[Streptococcus pneumoniae CDC0288-04]
Length = 506
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 41/303 (13%), Positives = 92/303 (30%), Gaps = 35/303 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDAD-SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
++ A+ L S S A A + A + M +++EE I
Sbjct: 209 IFSGFALVALLLGLSYSPALLAQKEKENLVIAGKIGPEPEILANMYKLLIEENTSMTATI 268
Query: 60 KL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------EGS 99
K + +LK IDI+ + E + P + +
Sbjct: 269 KPNFGTTSFLYEALKKGDIDIYPEFTGTVTESLLQPSPKVSHEPEQVYQVARDGIAKQDH 328
Query: 100 IKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ + Y +AV G+K+ D+ K + +L D
Sbjct: 329 LAYLKPMSYQNTYAVAVPKKIAQEYGLKTISDLKKVEGQLK---------AGFTLEFNDR 379
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ NK + L + + ++ + ++ ++ L +
Sbjct: 380 EDGNKGLQSMYGLNLNVATMQPALRYQAIQSGDIQITDAYSTDAELERYDLQVLED--DK 437
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F +++ L K P + R+L + K + + +++ + + + V +
Sbjct: 438 QLFPPYQGAPLMKEALLKKHPELERVLNTLAGKITESQMSQLNYQVGVEGKSAKQVAKEF 497
Query: 277 LRT 279
L+
Sbjct: 498 LQE 500
>gi|325687926|gb|EGD29946.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Streptococcus sanguinis
SK72]
Length = 506
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 31/303 (10%), Positives = 90/303 (29%), Gaps = 39/303 (12%)
Query: 3 KILAVCLFLTTFSISYARDAD-----SCTPVRFADTGWTDIAATTAMTSVILEEILG--Y 55
+ + + + + + A + M +++EE
Sbjct: 207 RTVFTAFAVLILGLGASYTPSLIPKQEKDHLVIAGKLGPEPEILMNMYKLLIEENTDMTV 266
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------E 97
+++LK IDI+ + + P + +
Sbjct: 267 TVKPNFGKTDFLYQALKKGDIDIYPEFTGTITGTLLQPTPKVSNDAEEVFEAARDGIKKQ 326
Query: 98 GSIKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
++ L+ Y +AV +K+ D+ + +L A N+
Sbjct: 327 DNLVLLNHMAYQNTYAIAVPKSIAKEYNLKTISDLKAVQDKLKAGFTL--EFNDREDGNK 384
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ + +L + + + ++ + ++ + ++ L
Sbjct: 385 GLQSVYGLNLNVSTMEP-------ALRYQAIQSGDIQITDAYSTDAELARYDLQVLED-- 435
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F +++++ L+K P + +L + K + + ++M + + + V R
Sbjct: 436 DKHLFPPYQGAPLLKAELLEKHPELEGILNKLAGKITESQMSQMNYQVGIEGKKAEAVAR 495
Query: 275 TML 277
L
Sbjct: 496 DYL 498
>gi|126740288|ref|ZP_01755977.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Roseobacter sp. SK209-2-6]
gi|126718743|gb|EBA15456.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Roseobacter sp. SK209-2-6]
Length = 352
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 39/315 (12%), Positives = 85/315 (26%), Gaps = 28/315 (8%)
Query: 1 MY--KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M +IL+ + ADS P+ W+ + + I EE +G
Sbjct: 36 MKLTRILSAAALTAVTGSAGLA-ADSSDPIVIPVHNWSSQIVMSNVVGQIFEE-MGNHVE 93
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ S++ + + M W + LE+G + ++ +
Sbjct: 94 YVTTDSQAVYESVRLGDVSLEMEVWEGAFGASFRAALEKGGLHDAGDHDAVTREDWWYPL 153
Query: 119 VG--FALGIKSYQDIAKYKKELGAKIYGIEPGN---EGNQRILDMINNNKFSLKGFRLIE 173
G+ +Q + G + + L +
Sbjct: 154 WTKEACPGLPDWQALNDCAHLFATAETGGKGRYLDGPVDWLKHGKERAEALDLNFTVINA 213
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG------------------ 215
S A +++I + P + +W P+ + ++
Sbjct: 214 GSAAALWAEIGAAEAEKKPVLVFNWTPNFAEAVWPGEFVNFPAWEDGCDKDPAKGPNPNA 273
Query: 216 -EEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGR 274
+ + K P L I F+ EM KL+ ++ + +
Sbjct: 274 LYDCGNPASGYLKKAAWDGMEGKWPAAYCALTKISFTNPQIAEMAKLVDTDELEPEEAAE 333
Query: 275 TMLRTHPDLLKNWLI 289
L + + W+
Sbjct: 334 EWLAANRAAVDPWIS 348
>gi|77410862|ref|ZP_00787219.1| amino acid ABC transporter, amino acid-binding protein/permease
protein [Streptococcus agalactiae CJB111]
gi|77163080|gb|EAO74034.1| amino acid ABC transporter, amino acid-binding protein/permease
protein [Streptococcus agalactiae CJB111]
Length = 276
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 31/276 (11%), Positives = 76/276 (27%), Gaps = 33/276 (11%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGIDIFMGYWY 84
+ A T+ M ++E+ K +K +++LK+ ID++ +
Sbjct: 8 TITVAGKLGTEPDILINMYKELIEDQTDIKVKLKPNFGKTTFLYQALKSGDIDLYPEFTG 67
Query: 85 PSLEKFIAPYLE------------------EGSIKLVAENLQGAKYMLAVNDVGFALGIK 126
+ + + + L++ Y +AV
Sbjct: 68 TITSSLLKNPPKVSNNPKQVYNLAKNGILKQDKLSLLSPMAYQNTYAVAVKKDYAEANQL 127
Query: 127 SYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRD 186
K +L A + + + + +L L + +
Sbjct: 128 KNISDLKKLDKLKAGFTL--EFKDREDGSIGLQKHYGLNLDISTLEP-------ALRYQA 178
Query: 187 QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLK 246
+ + ++ + L + F ++R D + K P + + L
Sbjct: 179 INSKDVNIIDAYSTDSELIQYQLQILKD--DKHLFPPYQGAPLLRQDTIKKYPQVKKALN 236
Query: 247 NI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ + EM + + V + L+ H
Sbjct: 237 KLAGHITEKEMQEMNYQVAVKHKSAATVAKQYLKAH 272
>gi|314924479|gb|EFS88310.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL001PA1]
gi|314967309|gb|EFT11408.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL082PA2]
gi|314981720|gb|EFT25813.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL110PA3]
gi|315092484|gb|EFT64460.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL110PA4]
gi|315094728|gb|EFT66704.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL060PA1]
gi|315102890|gb|EFT74866.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL050PA2]
gi|327328576|gb|EGE70336.1| periplasmic binding protein of proline/glycine betaine transport
system [Propionibacterium acnes HL103PA1]
Length = 352
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 56/276 (20%), Positives = 101/276 (36%), Gaps = 11/276 (3%)
Query: 19 ARDADSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGID 77
A D+ T + W + AT + +L++ GY IK V +++ ID
Sbjct: 79 AMTPDTNTSLTIGAFNGWDESWATAGLIKQVLKKD-GYTVTIKGFDAGVGYQATAGGDID 137
Query: 78 IFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKE 137
I W P + ++ + AK +AVN A I + K
Sbjct: 138 IITDSWLPVTQAGYIRKYG-PKLENLGCWYDNAKLTIAVNKNSPAHSIAD---LKKTGSA 193
Query: 138 LGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLS 197
G IY IEPG E + I + + L L +S A +Q+++ +
Sbjct: 194 YGNVIYSIEPGAEMTKTIANQTL-PMYGLSNITLKTSSTPAMLAQLQKATKAGSNVAVTL 252
Query: 198 WEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENE 257
W PH + L + E +Y+ R + P ++L++N+ A +
Sbjct: 253 WRPHWAYDAYPVRDLDDPKNAISNAE-LIYSFGRPGFEKDHPKAAQLIRNLAIDDAHLSS 311
Query: 258 MMKLILNN---KQDRQFVGRTMLRTHPDLLKNWLIG 290
+ L+++ + + +PD + +WL G
Sbjct: 312 LEHLMVDTTKRGGQQDTAISRWMADNPDWVHDWLTG 347
>gi|255029765|ref|ZP_05301716.1| hypothetical protein LmonL_13144 [Listeria monocytogenes LO28]
Length = 499
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 38/299 (12%), Positives = 91/299 (30%), Gaps = 34/299 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
++ + LT I A + A + M +++E+ K N+K
Sbjct: 212 TISAGILLTAAIIVVPYFASDKKEITIAGKLGAEPEILINMYKLVIEDETDLKVNVKPNM 271
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP-----------------YLEEGSIKLVA 104
F +LK+ IDI+ + LE F+ ++ + +
Sbjct: 272 GKTSFVFNALKSGDIDIYPEFTGTVLETFLKENAKTHDPEEVYTQARDGLAKDFDMTYLK 331
Query: 105 ENLQGAKYMLAV-NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK 163
Y LAV + ++ D+ ++ D + K
Sbjct: 332 PMKYNNTYALAVSPEFAKENNLEKISDLGPVSDQVK---------AGFTLEFKDRSDGYK 382
Query: 164 FSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
+ L ++ ++ ++ + ++ + + L +++
Sbjct: 383 GIQDKYGLTFSNLKTMEPKLRYNAIKSGDINLLDAYSTDSELAQYKLKVLEDDQQLF--P 440
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++ + LDK P + + L + K + +M + N + V + L+
Sbjct: 441 PYQGAPLMLTKTLDKYPELKKPLNKLAGKITDDEMRKMNYEVNVNGKSAYTVAKDYLKD 499
>gi|51893765|ref|YP_076456.1| glycine betaine/carnitine/choline ABC transporter substrate-binding
protein [Symbiobacterium thermophilum IAM 14863]
gi|51857454|dbj|BAD41612.1| glycine betaine/carnitine/choline ABC transporter substrate-binding
protein [Symbiobacterium thermophilum IAM 14863]
Length = 304
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 36/297 (12%), Positives = 75/297 (25%), Gaps = 29/297 (9%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKL 61
+ A L + + + + + +T+ + + ++E L
Sbjct: 10 VAAAVLCVLLAGCGGGAGSGAGDAIVVSSKDFTESILLGEIAAQLIESRTDLTVVRKHNL 69
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFI-----------------APYLEEGSIKLVA 104
V F LKN I ++ Y + + + E+ I A
Sbjct: 70 GGTTVNFNGLKNGDITLYAEYDGTAYGPILGHTEPIADPDGLHDLVKREFEEKFGITWTA 129
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKF 164
Y LAV + E ++ F
Sbjct: 130 PLGMNNTYTLAVPREIAEQHNLKTFSDLLAVDDQLVFGTTNEFMGRQVDGYYPLVEAYGF 189
Query: 165 SLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEA 224
+ K + + V ++ + ++ L
Sbjct: 190 AFKDVK------TMQTGLRWKAIETGEIQVIDAYATDGKLVEFDMVILEDDRNFF--PPY 241
Query: 225 SVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+ VVR D ++ P I LL + E+ + + ++ + V R L
Sbjct: 242 NGAYVVRMDAAERHPEIIELLNQLGGLLPDEKMQELNYRVESLEEPVEEVARDFLVE 298
>gi|303254630|ref|ZP_07340732.1| choline transporter [Streptococcus pneumoniae BS455]
gi|303258806|ref|ZP_07344786.1| choline transporter [Streptococcus pneumoniae SP-BS293]
gi|303261969|ref|ZP_07347915.1| choline transporter [Streptococcus pneumoniae SP14-BS292]
gi|303263831|ref|ZP_07349753.1| choline transporter [Streptococcus pneumoniae BS397]
gi|303265634|ref|ZP_07351533.1| choline transporter [Streptococcus pneumoniae BS457]
gi|303268743|ref|ZP_07354532.1| choline transporter [Streptococcus pneumoniae BS458]
gi|301802552|emb|CBW35313.1| ABC-type glycine betaine transport system protein [Streptococcus
pneumoniae INV200]
gi|302598342|gb|EFL65386.1| choline transporter [Streptococcus pneumoniae BS455]
gi|302637052|gb|EFL67541.1| choline transporter [Streptococcus pneumoniae SP14-BS292]
gi|302640307|gb|EFL70762.1| choline transporter [Streptococcus pneumoniae SP-BS293]
gi|302641699|gb|EFL72057.1| choline transporter [Streptococcus pneumoniae BS458]
gi|302644761|gb|EFL75009.1| choline transporter [Streptococcus pneumoniae BS457]
gi|302646869|gb|EFL77094.1| choline transporter [Streptococcus pneumoniae BS397]
Length = 506
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 39/303 (12%), Positives = 91/303 (30%), Gaps = 35/303 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDAD-SCTPVRFADTGWTDIAATTAMTSVILEEI--LGYKT 57
++ A+ L S S A A + A + M +++EE +
Sbjct: 209 IFSGFALVALLLGLSYSPALLAQKEKENLIIAGKIGPEPEILANMYKLLIEENTSMTATV 268
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------EGS 99
+ +LK IDI+ + E + P + +
Sbjct: 269 KPNFGTTSFLYEALKKGDIDIYPEFTGTVTESLLQPSPKVSHEPEQVYQVARDGIAKQDH 328
Query: 100 IKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ + Y +AV G+K+ D+ K + +L D
Sbjct: 329 LAYLKPMSYQNTYAVAVPKKIAQEYGLKTISDLKKVEGQLK---------AGFTLEFNDR 379
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ NK + L + + ++ + ++ ++ L +
Sbjct: 380 EDGNKGLQSMYGLNLNVATMQPALRYQAIQSGDIQITDAYSTDAELERYDLQVLED--DK 437
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F +++ L K P + R+L + K + + +++ + + + V +
Sbjct: 438 QLFPPYQGAPLMKEALLKKYPELERVLNTLAGKITESQMSQLNYQVGVEGKSAKQVAKEF 497
Query: 277 LRT 279
L+
Sbjct: 498 LQE 500
>gi|295706022|ref|YP_003599097.1| putative glycine/betaine/carnitine/choline ABC transporter
permease/substrate-binding protein Opu [Bacillus
megaterium DSM 319]
gi|294803681|gb|ADF40747.1| putative glycine/betaine/carnitine/choline ABC transporter,
permease/substrate-binding protein Opu [Bacillus
megaterium DSM 319]
Length = 507
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 33/284 (11%), Positives = 77/284 (27%), Gaps = 32/284 (11%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKN 73
+A + + + + M ++E+ K N++ F +L+N
Sbjct: 226 SPFAAMSATKPDLVIGGKIGAEQDILINMYKELIEDQTDMKVNLRSSLGKTVFVFEALRN 285
Query: 74 KGIDIFMGYWYPSLEKFIAPYLE-----------------EGSIKLVAENLQGAKYMLAV 116
K ID++ Y ++ + + + + + Y L V
Sbjct: 286 KEIDLYPEYTGTAIVTHLKEQPDSKDETEVYKQAKEEFQKKFGLVYLDPMKFNNTYTLTV 345
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ + D + K + L +
Sbjct: 346 TKEFAKENNLTTISDLANATDKVK--------AGFTLEFKDREDGYVGIQKEYGLTFPNI 397
Query: 177 LASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYL 235
++ R + ++ P + L +++ V+R D L
Sbjct: 398 KTMEPKLRYRAVEKGDINMLDAYATDPEIKQFGLKVLKDDQQLF--PPYQGAPVLREDTL 455
Query: 236 DKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ P + ++L + K S EM + + + V L
Sbjct: 456 KEHPELKKILNQLGGKISDEEMREMNYQVNAKGKTAEEVAHQFL 499
>gi|290894091|ref|ZP_06557064.1| glycine betaine/carnitine/choline ABC transporter [Listeria
monocytogenes FSL J2-071]
gi|290556346|gb|EFD89887.1| glycine betaine/carnitine/choline ABC transporter [Listeria
monocytogenes FSL J2-071]
Length = 520
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 39/299 (13%), Positives = 91/299 (30%), Gaps = 34/299 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
++ + LT I A + A + M +++E+ K N+K
Sbjct: 212 TISAGILLTAAIIVVPYFASDKKEITIAGKLGAEPEILINMYKLVIEDETDLKVNVKPNM 271
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP-----------------YLEEGSIKLVA 104
F +LK+ IDI+ + LE F+ ++ + +
Sbjct: 272 GKTSFVFNALKSGDIDIYPEFTGTVLETFLKENAKTHDPEEVYTQARDGLAKDFDMTYLK 331
Query: 105 ENLQGAKYMLAV-NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK 163
Y LAV + ++ D+ ++ D + K
Sbjct: 332 PMKYNNTYALAVSPEFAKENNLEKISDLGPVSDQVK---------AGFTLEFKDRSDGYK 382
Query: 164 FSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
+ L ++ ++ ++ + ++ + + L E++
Sbjct: 383 GIQDKYGLTFSNLKTMEPKLRYNAIKSGDINLLDAYSTDSELAQYKLKVLEDDEQLF--P 440
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++ + LDK P + + L + K + +M + N + V + L+
Sbjct: 441 PYQGAPLMLTKTLDKYPELKKPLNKLAGKITDDEMRKMNYEVNVNGKSAYTVAKEYLQD 499
>gi|254250443|ref|ZP_04943762.1| Periplasmic glycine betaine/choline-binding (lipo)protein
[Burkholderia cenocepacia PC184]
gi|124879577|gb|EAY66933.1| Periplasmic glycine betaine/choline-binding (lipo)protein
[Burkholderia cenocepacia PC184]
Length = 312
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 39/306 (12%), Positives = 85/306 (27%), Gaps = 32/306 (10%)
Query: 1 MYKILAVC--LFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
+++IL L + A + +T+ +TS L GY
Sbjct: 12 LHRILRSLARLCAASALCVAAGTPAFAATLVLGAKNFTEQYVLAELTSQYLRSR-GYDVE 70
Query: 59 IKLL-AVPVTFRSLKNKGIDIFMGYWYPS---------------LEKFIAPYLEEGSIKL 102
++ + +L+N D+ Y + + + + +
Sbjct: 71 VRAGLGSTLARSALENGQFDLMWDYTGTAALVYNKIQDKLSPEEMYRRVKALDVPRGLVW 130
Query: 103 VAENLQGAKYMLAVNDVGFALG----IKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILD 157
+ + Y + + + + K ++G++ +
Sbjct: 131 LDASPLNDTYAIGLPSQLAQATGIRTVSQLAEHLKTDPAAKHYVFGMDAEFANRPDGLKP 190
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
++ +L + + NN + L + I L +
Sbjct: 191 LLAAYGMQFSRAQLKQMDPG----LVYTALHNNQLKIGLVYTTDGRVKGFGIVPLED--D 244
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRT 275
F + VVR D L P ++ L + M K + + + + V
Sbjct: 245 RHFFPPYNATPVVRQDTLAHNPKLAAQLNALSAALDNDAMQAMAKAVDLDGKSPRDVADA 304
Query: 276 MLRTHP 281
LRTHP
Sbjct: 305 FLRTHP 310
>gi|302188819|ref|ZP_07265492.1| glycine betaine/choline OpuC ABC transporter, periplasmic
substrate-binding protein [Pseudomonas syringae pv.
syringae 642]
Length = 297
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 43/304 (14%), Positives = 91/304 (29%), Gaps = 32/304 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M KI A +R +T+ +T+ L Y I
Sbjct: 1 MKKI--CLFLGFALLFPALAQAAEKPLLRVGARVFTEQTILAELTAQYLRTK-NYDVQIT 57
Query: 61 LL-AVPVTFRSLKNKGIDIFMGYWYPSLEKF---------------IAPYLEEGSIKLVA 104
+ + + +D+ Y SL + + + + ++
Sbjct: 58 GGLGSNLARSAQETGQLDLLWEYTGVSLVAYNHIDEKLDSAQTYARVKEVDAKKGLVWLS 117
Query: 105 ENLQGAKYMLAVNDVGFALG--IKSYQDIAKYKKELGAKIYGIE---PGNEGNQRILDMI 159
+ Y LA+ + + D+AK K+ + + + + ++ M+
Sbjct: 118 PSKFNNTYALALPQKVADKYPQVNTMTDLAKVFKDEANEGHLVALDTEFANRSDGLIGMV 177
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
+ +L + + +N L + + + L +
Sbjct: 178 KHYDMNLGRENTRQMDSG----LVYTALQNGQVFAGLVYTTDGRLNAFKLKVLED--DKH 231
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
F + + V+R +YLDK P+I LLK + ++ + + V L
Sbjct: 232 YFPDYTAAPVIRQEYLDKHPDIETLLKPLADLLDNQTMIDLNARVDVGHESPSTVAADFL 291
Query: 278 RTHP 281
R HP
Sbjct: 292 RQHP 295
>gi|322411670|gb|EFY02578.1| ABC-type glycine betaine transport system protein [Streptococcus
dysgalactiae subsp. dysgalactiae ATCC 27957]
Length = 508
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 33/297 (11%), Positives = 84/297 (28%), Gaps = 34/297 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--L 61
I + L + + ++ + V A + + ++E+ +K
Sbjct: 215 ITFLALLASYAPMVLSQFSKGKDTVVIAGKLGAEPDILINLYKELIEDQSNISVELKSHF 274
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------EGSIKLV 103
+ +LK+ IDI+ + + + + L+
Sbjct: 275 GKTSFLYEALKSGDIDIYPEFTGTITSSLLRDKPPLSNDPKQVYEDAKKGIAKQDKLTLL 334
Query: 104 AENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
Y +A+ + I++ D+ + L D +
Sbjct: 335 KPFAYQNTYAVAMPEKLAEEYQIETISDLKVHADTLK---------AGFTLEFKDRADGY 385
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
K + L + + + ++ V ++ + ++ L + F
Sbjct: 386 KGMQSQYGLHLSVATMEPALRYQAIQSGDIQVTDAYSTDAEITKYHLKVLKD--DKQLFP 443
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
++++ L K P + +L + K + +M + D V R L
Sbjct: 444 PYQGAPLMKASLLTKHPELKGILNQLAGKITEKEMQDMNYKVSVKGADANKVARDYL 500
>gi|114769514|ref|ZP_01447140.1| glycine betaine/L-proline ABC transporter, periplasmic binding
protein, putative [alpha proteobacterium HTCC2255]
gi|114550431|gb|EAU53312.1| glycine betaine/L-proline ABC transporter, periplasmic binding
protein, putative [alpha proteobacterium HTCC2255]
Length = 318
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 50/317 (15%), Positives = 99/317 (31%), Gaps = 35/317 (11%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
KIL +F+ + + + A+D+ + AD WT A + I+ +G + I
Sbjct: 5 KKILISLVFIISATTASAQDS----KIAIADLTWTGATAIGHIIQAIITGPMGGEAEIIK 60
Query: 62 LAVP----VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
A + ID+ W P Y+EE + + + G + M
Sbjct: 61 GASDGSIIFASMDKGDGSIDVHPDIWMPVQSNNWEKYIEENNTVAINKPYNGTQGMFIPY 120
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYG------IEPGNEGNQRILDMINNNKFSLKGFRL 171
+ + S G + + + +
Sbjct: 121 YLKDKITSFSDLANPAIASMFDKDGNGKGEYWAGDTSWTSTKIWQVKFKSYGLDEL-WEP 179
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI------------- 218
S+ +Q++ N P +F W P I + ++ +
Sbjct: 180 EIVSDETFKNQLKIAYDNQKPILFYYWTPEWIFAAYDLSQIEEPLVSEGCKVLNLDHQNW 239
Query: 219 -------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQF 271
+A V+ D+ P ++R+L NI S NE I + ++
Sbjct: 240 LEASTFSCKHTDAEVWIGHSKSLEDRNPAVARMLSNIALSPETINEWTLKIGRDGENPIN 299
Query: 272 VGRTMLRTHPDLLKNWL 288
V + + + +L+ NW+
Sbjct: 300 VAESWVAKNIELVNNWI 316
>gi|24380450|ref|NP_722405.1| putative ABC transporter; osmoprotectant-binding protein, glycine
betaine/carnitine/choline ABC transporter [Streptococcus
mutans UA159]
gi|290581381|ref|YP_003485773.1| putative ABC transporter osmoprotectant-binding protein
[Streptococcus mutans NN2025]
gi|24378478|gb|AAN59711.1|AE015033_6 putative ABC transporter; osmoprotectant-binding protein, glycine
betaine/carnitine/choline ABC transporter [Streptococcus
mutans UA159]
gi|254998280|dbj|BAH88881.1| putative ABC transporter osmoprotectant-binding protein
[Streptococcus mutans NN2025]
Length = 311
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 40/309 (12%), Positives = 79/309 (25%), Gaps = 35/309 (11%)
Query: 1 MYKI---LAVCLFLTTFSISYARDADSCTP-------VRFADTGWTDIAATTAMTSVILE 50
M KI L + L + ++ + ++ A T+ + M S ++
Sbjct: 1 MKKITYFLIITLMIPILMLTSCHSNNKAKTNTNTSGNIKIAAMSTTESSIMANMISELIN 60
Query: 51 EILGYKTNIKL--LAVPVTFRSLKNKGIDIFMGYWYPSL---------------EKFIAP 93
LGYKT + + V ++L DI + + I
Sbjct: 61 HELGYKTTLVSNLGSTNVVHQALIRNDADIAATRYTGTDLTGTLNLSAEKDHTKAAKIVK 120
Query: 94 YLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQ 153
G A + + +K G++
Sbjct: 121 KAFAKRFDQTWFPSYGFADTYAFMVTSKFAQQNHLKTFSDLQKISTTAKAGVDSTWMKRV 180
Query: 154 RILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLP 213
+ + + + NN V L + ++ L
Sbjct: 181 GDGYKDFSRAYGFSFKHIYP----MQIGLVYDAVENNKMQVVLGYSTDGRIQSYDLTILE 236
Query: 214 GGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQF 271
F VV + L K P + LL + K + ++ + + +
Sbjct: 237 D--NKHFFPPYDASMVVNNRILRKYPKLKTLLHRLDGKIDLKTMQKLNYQVDDQLLEPSV 294
Query: 272 VGRTMLRTH 280
V L+ H
Sbjct: 295 VAHQFLKKH 303
>gi|94990479|ref|YP_598579.1| glycine betaine transport system permease protein / glycine
betaine-binding protein [Streptococcus pyogenes
MGAS10270]
gi|94543987|gb|ABF34035.1| Glycine betaine transport system permease protein / Glycine
betaine-binding protein [Streptococcus pyogenes
MGAS10270]
Length = 520
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 32/297 (10%), Positives = 84/297 (28%), Gaps = 34/297 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--L 61
I + L + ++ ++ V A + + ++E+ +K
Sbjct: 227 ITLLALLASYTPMALSQFLKGKDTVVIAGKLGAEPDILINLYKELIEDQSDISVELKSNF 286
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------EGSIKLV 103
+ +LK+ IDI+ + + + + L+
Sbjct: 287 GKTSFLYEALKSGDIDIYPEFTGTITSSLLRDKPPLSNDPKQVYEDAKKGIAKQDKLTLL 346
Query: 104 AENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
Y +A+ + I++ D+ + L D +
Sbjct: 347 KPFAYQNTYAVAMPEKLAKEYQIETISDLKAHADTLK---------AGFTLEFKDRADGY 397
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
K + L + + + ++ V ++ + ++ L + F
Sbjct: 398 KGMQSQYGLQLSVATMEPALRYQAIQSGDIQVTDAYSTDAEITKYHLKVLKD--DKQLFP 455
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
++++ L K P + +L + K + +M + D + R L
Sbjct: 456 PYQGAPLMKTSLLTKHPELKGILNQLAGKITEKEMQDMNYEVSVKGADANKIARDYL 512
>gi|307128056|ref|YP_003880087.1| choline ABC transporter membrane-spanning permeaseer [Streptococcus
pneumoniae 670-6B]
gi|306485118|gb|ADM91987.1| ABC transporter membrane-spanning permease - choline transporter
[Streptococcus pneumoniae 670-6B]
gi|332072200|gb|EGI82685.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Streptococcus pneumoniae GA17545]
Length = 506
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 39/303 (12%), Positives = 91/303 (30%), Gaps = 35/303 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDAD-SCTPVRFADTGWTDIAATTAMTSVILEEI--LGYKT 57
++ A+ L S S A A + A + M +++EE +
Sbjct: 209 IFSGFALMALLLGLSYSPALLAQKEKENLIIAGKIGPEPEILANMYKLLIEENTSMTATV 268
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------EGS 99
+ +LK IDI+ + E + P + +
Sbjct: 269 KPNFGTTSFLYEALKKGDIDIYPEFTGTVTESLLQPSPKVSHEPEQVYQVARDGIAKQDH 328
Query: 100 IKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ + Y +AV G+K+ D+ K + +L D
Sbjct: 329 LAYLKPMSYQNTYAVAVPKKIAQEYGLKTISDLKKVEGQLK---------AGFTLEFNDR 379
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ NK + L + + ++ + ++ ++ L +
Sbjct: 380 EDGNKGLQSMYGLNLNVATMQPALRYQAIQSGDIQITDAYSTDAELERYDLQVLED--DK 437
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F +++ L K P + R+L + K + + +++ + + + V +
Sbjct: 438 QLFPPYQGAPLMKEALLKKHPELERVLNTLAGKITESQMSQLNYQVGVEGKSAKQVAKEF 497
Query: 277 LRT 279
L+
Sbjct: 498 LQE 500
>gi|297621325|ref|YP_003709462.1| Glycine betaine/carnitine/choline-binding protein precursor
[Waddlia chondrophila WSU 86-1044]
gi|297376626|gb|ADI38456.1| Glycine betaine/carnitine/choline-binding protein precursor
[Waddlia chondrophila WSU 86-1044]
Length = 498
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 36/305 (11%), Positives = 83/305 (27%), Gaps = 34/305 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDA--DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
+ + + F + ++ + A +T+ M + +LE+ Y
Sbjct: 195 IKSFAKIAVVSIIFVTVFYQNGFFQQKPSITVATKNFTEQFILGEMIAQLLEKHTPYPVK 254
Query: 59 IKL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP-----------------YLEEGS 99
K + + +++ N IDI+ Y + + Y E+
Sbjct: 255 RKFNLGSTDLCHQAMLNGDIDIYPEYTGTAHLLVLKENNYNLDPDELFDFVNQHYQEKFG 314
Query: 100 IKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDM 158
I+ + +L ++ I K G +++
Sbjct: 315 IEWLHPLGFSNTEVLIARSDQAEKY--HWRSIGDIKPHAEYMAIGAPAEFCSRPDGLINF 372
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
K L+E + + + HP + L +I
Sbjct: 373 KEKYGIVFKKTVLLEP------GLMYEAALQGEVDLIAGFSTHPKLQGCPLVSLNDDLKI 426
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
++R D + P I +L + K S ++ ++ ++ V
Sbjct: 427 F--PPYHAAILIRQDIIKNKPEIKEILLKLSGKISEEKIRKLNYMVEIENKNIDCVVEQF 484
Query: 277 LRTHP 281
L +
Sbjct: 485 LTENQ 489
>gi|238755714|ref|ZP_04617048.1| Osmoprotectant transport protein OusBX [Yersinia ruckeri ATCC
29473]
gi|238706081|gb|EEP98464.1| Osmoprotectant transport protein OusBX [Yersinia ruckeri ATCC
29473]
Length = 333
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 36/320 (11%), Positives = 91/320 (28%), Gaps = 35/320 (10%)
Query: 3 KILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IK 60
K+ A+ L + A + V + ++ T + + LE LGY+ K
Sbjct: 5 KLWALALTTLISAQLSAAELPGKGVSVLPIQSTISEETFQTELVNKALE-KLGYEVQPTK 63
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ V + ++ W P + + ++G ++
Sbjct: 64 EVDYNVAYSTIAAGDATFLAVNWEPLHDDQYKAAGGDAKFYRQGNYIEGLAQGYLIDKKT 123
Query: 121 FALGIKSYQD---------IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
+ + + + A + G PG I ++ S
Sbjct: 124 ADQYHITNIEQLKDPKIAKLFDANNDGKADLTGCNPGWGCEAPINHQLDAYGLS-HTVTH 182
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEP----HPINSDLNIHYLPGGEE---------- 217
+ + A + + P ++ +W P + ++ +L
Sbjct: 183 NQGNYAAMIADTITRYKEGQPILYYTWTPYWVSDILVPGRDVIWLQVPFSSLPDKSINTQ 242
Query: 218 -----ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI---LNNKQDR 269
GF + ++ + + + P ++L +K ++ N + ++ D
Sbjct: 243 LANGANYGFPPSVMHIIANKKWAEANPAAAKLFSIMKLPISDVNAQNMRMHAGESSDADI 302
Query: 270 QFVGRTMLRTHPDLLKNWLI 289
+ + H W+
Sbjct: 303 ERHVNGWIAAHQATFDGWVK 322
>gi|168208864|ref|ZP_02634489.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Clostridium
perfringens B str. ATCC 3626]
gi|170712906|gb|EDT25088.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Clostridium
perfringens B str. ATCC 3626]
Length = 517
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 33/286 (11%), Positives = 88/286 (30%), Gaps = 31/286 (10%)
Query: 13 TFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPVTFRS 70
F + + V +T+ M + ++++ K + L V F +
Sbjct: 234 LFMGISSFISSKKDKVVIGSKNFTEQLILGNMYADLVQDKTDLKVEKKLNLGGTSVAFGA 293
Query: 71 LKNKGIDIFMGYWYPSLEKFIAP----------------YLEEGSIKLVAENLQGAKYML 114
L+ +D+++ Y L + +E + ++ Y +
Sbjct: 294 LEKGDVDMYVDYTGTLLVNVMKENNIDNSVDYYNSIKENMNKEHGLTVMEPLGFNNTYNI 353
Query: 115 AVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
A++ I + D++KY + ++ + N K + ++
Sbjct: 354 AISKELADKYKINTISDLSKYSNDFVLSPT--IEFQNRQDGLVGLKNYYGMDFKNVKSLD 411
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
S N ++ + ++ L ++ S +V +
Sbjct: 412 GSLR------YSALSNGESQAIDAFSTDGLLKKFDLKTLEDDKKFFVN--YSAVPIVNNK 463
Query: 234 YLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
L+K P + +L ++ K + ++ + + + V + L
Sbjct: 464 TLEKYPQLKDVLNSLSGKINEEKMIDLNYEVDVLGKSPEEVAKAFL 509
>gi|126731789|ref|ZP_01747593.1| ABC transporter binding protein [Sagittula stellata E-37]
gi|126707616|gb|EBA06678.1| ABC transporter binding protein [Sagittula stellata E-37]
Length = 318
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 37/318 (11%), Positives = 86/318 (27%), Gaps = 37/318 (11%)
Query: 3 KILAVCLFLTTFSISYAR--DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
K+ A L F + A++ P++ A+ D T + L+ GY
Sbjct: 7 KLTAAACVLAGFGTAAMAELQAETQQPIKLAEFNIPDADFITNVYGEALKRA-GYNVEYI 65
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
F +L+ I + W + L ++ + + D
Sbjct: 66 KADYTAHFTALEFGDIHMSPAIWSSTP-DLTEAALASPDVENLGSVGVDIREGWWYPDYV 124
Query: 121 FA--LGIKSYQDIAK---------YKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
G+ ++ + + + + P D L
Sbjct: 125 AELCPGLPDWKALLEDACVEALSSPEAPGKIRYISAPPDWS----PYDEERVKSLGLPVE 180
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE------------- 216
+ + A + + + PA+ + PH + N ++
Sbjct: 181 IVPPGTAAAMVATMDGAVKRGAPAIGFGFVPHWLYGAGNGQFVDFPTYDDACLTDASWGE 240
Query: 217 -----EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQF 271
++Y + + PN + + + ++ I N
Sbjct: 241 NPDEIGDCDLQAGTIYKLAYMPTAEWAPNAVEIFRRFTTTTEAVSQATDDIENGGMSAAE 300
Query: 272 VGRTMLRTHPDLLKNWLI 289
+ + + DL+++WL
Sbjct: 301 AAQKWMAGNEDLVQSWLK 318
>gi|327489209|gb|EGF21002.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Streptococcus sanguinis
SK1058]
Length = 506
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 31/303 (10%), Positives = 90/303 (29%), Gaps = 39/303 (12%)
Query: 3 KILAVCLFLTTFSISYARDAD-----SCTPVRFADTGWTDIAATTAMTSVILEEILG--Y 55
+ + + + + + A + M +++EE
Sbjct: 207 RTVFTAFAVLILGLGASYTPSLLPKQEKDHMVIAGKLGPEPEILMNMYKLLIEENTDMTV 266
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------E 97
+++LK IDI+ + + P + +
Sbjct: 267 TVKPNFGKTDFLYQALKKGDIDIYPEFTGTITGTLLQPAPKVSNDAEEVFEAARDGIKKQ 326
Query: 98 GSIKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
++ L+ Y +AV +K+ D+ + +L A N+
Sbjct: 327 DNLVLLNHMAYQNTYAIAVPKSVAKEYNLKTISDLKAVQDKLKAGFTL--EFNDREDGNK 384
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ + +L + + + ++ + ++ + ++ L
Sbjct: 385 GLQSVYGLNLNVSTMEP-------ALRYQAIQSGDIQITDAYSTDAELARYDLQVLED-- 435
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F +++++ L+K P + +L + K + + ++M + + + V R
Sbjct: 436 DKHLFPPYQGAPLLKAELLEKHPELEGVLNKLAGKITESQMSQMNYQVGIEGKKAEAVAR 495
Query: 275 TML 277
L
Sbjct: 496 DYL 498
>gi|257789861|ref|YP_003180467.1| Substrate-binding region of ABC-type glycine betaine transport
system [Eggerthella lenta DSM 2243]
gi|257473758|gb|ACV54078.1| Substrate-binding region of ABC-type glycine betaine transport
system [Eggerthella lenta DSM 2243]
Length = 528
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 35/288 (12%), Positives = 72/288 (25%), Gaps = 31/288 (10%)
Query: 13 TFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL---LAVPVTFR 69
+ ++A V A T+ M + ++E K +
Sbjct: 247 GGAFAFANRGGGENVVNIATKPMTEQYILGEMLNTLIEHDTDLKVELTQGVGGGTSNIEP 306
Query: 70 SLKNKGIDIFMGYWYPSLEKFIA---------------PYLEEGSIKLVAENLQGAKYML 114
++ D++ Y + Y + + V Y L
Sbjct: 307 GMEKGDFDLYPEYTGTGWNAVLKHDDTYDESMFDTMQQEYESQLGLTWVGMYGFNNTYGL 366
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEP-GNEGNQRILDMINNNKFSLKGFRLIE 173
AV+ + + + G G EP + + +
Sbjct: 367 AVSRDAAERY--NLRTYSDLAGAAGGLTLGAEPDFFDRQDGYPGLQQAYGMNFG------ 418
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+ S + + +D + L + + VVR D
Sbjct: 419 TTRDMDISLKYQALFEGQVDAIVVSTTDGQVADERLVVLED--DRHFYPSYLCGNVVRQD 476
Query: 234 YLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
L+K P + L ++ + A M + Q+ + V L
Sbjct: 477 ALEKHPELRGELLKLQGAITDADMARMNNEVETQGQEPKAVADAFLAE 524
>gi|182684804|ref|YP_001836551.1| choline transporter [Streptococcus pneumoniae CGSP14]
gi|182630138|gb|ACB91086.1| choline transporter [Streptococcus pneumoniae CGSP14]
Length = 511
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 39/303 (12%), Positives = 91/303 (30%), Gaps = 35/303 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDAD-SCTPVRFADTGWTDIAATTAMTSVILEEI--LGYKT 57
++ A+ L S S A A + A + M +++EE +
Sbjct: 214 IFSGFALVALLLGLSYSPALLAQKEKENLIIAGKIGPEPEILANMYKLLIEENTSMTATV 273
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------EGS 99
+ +LK IDI+ + E + P + +
Sbjct: 274 KPNFGTTSFLYEALKKGDIDIYPEFTGTVTESLLQPSPKVSHEPEQVYQVARDGIAKQDH 333
Query: 100 IKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ + Y +AV G+K+ D+ K + +L D
Sbjct: 334 LAYLKPMSYQNTYAVAVPKKIAQEYGLKTISDLKKVEGQLK---------AGFTLEFNDR 384
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ NK + L + + ++ + ++ ++ L +
Sbjct: 385 EDGNKGLQSMYGLNLNVATMQPALRYQAIQSGDIQITDAYSTDAELERYDLQVLED--DK 442
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F +++ L K P + R+L + K + + +++ + + + V +
Sbjct: 443 QLFPPYQGAPLMKEALLKKYPELERVLNTLAGKITESQMSQLNYQVGVEGKSAKQVAKEF 502
Query: 277 LRT 279
L+
Sbjct: 503 LQE 505
>gi|16080424|ref|NP_391251.1| choline ABC transporter choline-binding lipoprotein [Bacillus
subtilis subsp. subtilis str. 168]
gi|221311321|ref|ZP_03593168.1| choline ABC transporter (choline-binding protein) [Bacillus
subtilis subsp. subtilis str. 168]
gi|221315648|ref|ZP_03597453.1| choline ABC transporter (choline-binding protein) [Bacillus
subtilis subsp. subtilis str. NCIB 3610]
gi|221320564|ref|ZP_03601858.1| choline ABC transporter (choline-binding protein) [Bacillus
subtilis subsp. subtilis str. JH642]
gi|221324848|ref|ZP_03606142.1| choline ABC transporter (choline-binding protein) [Bacillus
subtilis subsp. subtilis str. SMY]
gi|7404430|sp|Q45462|OPUBC_BACSU RecName: Full=Choline-binding protein; Flags: Precursor
gi|2293449|gb|AAC14358.1| choline binding protein precursor [Bacillus subtilis subsp.
subtilis str. JH642]
gi|2635884|emb|CAB15376.1| choline ABC transporter (choline-binding lipoprotein) [Bacillus
subtilis subsp. subtilis str. 168]
Length = 306
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 35/308 (11%), Positives = 79/308 (25%), Gaps = 33/308 (10%)
Query: 1 MY----KILAVCLFLTTFSISYAR----DADSCTPVRFADTGWTDIAATTAMTSVILEEI 52
M K++ T ++S A + ++ ++ +M ++E
Sbjct: 1 MKRKYLKLMIGLALAATLTLSGCSLPGLSAAADQTIKIGAQSMSESEIIASMLGQLIEHH 60
Query: 53 LGYKTNIKLLAVPVTFRSLK--NKGIDIFMGYWY---------------PSLEKFIAPYL 95
KT + N IDI + P +
Sbjct: 61 TDLKTTTIKNLGSNAVQQQALMNGEIDIAATRYTGDALTGTLRMEPEKDPDKALALTQRE 120
Query: 96 EEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRI 155
+ L + G A + ++ KK G++ +
Sbjct: 121 FKKRYDLKWYDSYGFDNTYAFTVSKELADQYHLETVSDVKKWAPQLKLGVDNYWMKLKGN 180
Query: 156 LDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG 215
+ + + + ++ + L++ + L
Sbjct: 181 GYQDFTKTYGMTFG----GTYPMQIGLVYDAVKSGKMDIVLAYSTDGRIKSYGLKMLKD- 235
Query: 216 EEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVG 273
+ F VV L + P + ++K + K A E+ + N ++ V
Sbjct: 236 -DKQFFPPYDCSPVVPEKVLKEHPELEGIIKKMLGKIDTATMQELNYEVDGNLKEPSVVA 294
Query: 274 RTMLRTHP 281
+ L H
Sbjct: 295 KEYLEKHR 302
>gi|149024984|ref|ZP_01836364.1| choline transporter (glycine betaine transport system permease
protein) [Streptococcus pneumoniae SP23-BS72]
gi|147929477|gb|EDK80472.1| choline transporter (glycine betaine transport system permease
protein) [Streptococcus pneumoniae SP23-BS72]
Length = 506
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 39/303 (12%), Positives = 91/303 (30%), Gaps = 35/303 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDAD-SCTPVRFADTGWTDIAATTAMTSVILEEI--LGYKT 57
++ A+ L S S A A + A + M +++EE +
Sbjct: 209 IFSGFALMALLLGLSYSPALLAQKEKENLIIAGKIGPEPEILANMYKLLIEENTSMTATV 268
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------EGS 99
+ +LK IDI+ + E + P + +
Sbjct: 269 KPNFGTTSFLYEALKKGDIDIYPEFTGTVTESLLQPSPKVSHEPEQVYQVARDGIAKQDH 328
Query: 100 IKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ + Y +AV G+K+ D+ K + +L D
Sbjct: 329 LAYLKPMSYQNTYAVAVPKKIAQEYGLKTISDLKKVEGQLK---------AGFTLEFNDR 379
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ NK + L + + ++ + ++ ++ L +
Sbjct: 380 EDGNKGLQSMYGLNLNVATMQPALRYQAIQSGDIQITDAYSTDAELERYDLQVLED--DK 437
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F +++ L K P + R+L + K + + +++ + + + V +
Sbjct: 438 QLFPPYQGAPLMKEALLKKHPELERVLNTLAGKITESQMSQLNYQVGVEGKSAKQVAKEF 497
Query: 277 LRT 279
L+
Sbjct: 498 LQE 500
>gi|107028483|ref|YP_625578.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia cenocepacia AU 1054]
gi|116686478|ref|YP_839725.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia cenocepacia HI2424]
gi|105897647|gb|ABF80605.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia cenocepacia AU 1054]
gi|116652193|gb|ABK12832.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia cenocepacia HI2424]
Length = 303
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 37/306 (12%), Positives = 83/306 (27%), Gaps = 32/306 (10%)
Query: 1 MYKILAVC--LFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
+++IL L A + +T+ +TS L GY
Sbjct: 3 LHRILRSLARLCAAGVLCVAAGTPAFAAKLVLGAKNFTEQYVLAELTSQYLRSR-GYDVE 61
Query: 59 IKLL-AVPVTFRSLKNKGIDIFMGYWYPS---------------LEKFIAPYLEEGSIKL 102
++ + +L+N D+ Y + + + + +
Sbjct: 62 VRAGLGSTLARSALENGQFDLMWDYTGTAALVYNKIQDKLSPEEMYRRVKALDVPRGLVW 121
Query: 103 VAENLQGAKYMLAVNDVGFALG----IKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILD 157
+ + Y + + + + K ++G++ +
Sbjct: 122 LDASPLNDTYAIGLPSQLAQATGIRTVSQLAEHLKTDPAAKHYVFGMDAEFANRPDGLKP 181
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
++ +L + + NN + L + I L +
Sbjct: 182 LLAAYGMQFSRAQLKQMDPG----LVYTALHNNQLKIGLVYTTDGRVKGFGIVPLED--D 235
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRT 275
F + VVR L+ P ++ L + M K + + + + V
Sbjct: 236 RHFFPPYNATPVVRKGTLESNPKLATQLNALSAALDNDAMQAMAKAVDLDGKSPRDVADA 295
Query: 276 MLRTHP 281
L THP
Sbjct: 296 FLCTHP 301
>gi|330962457|gb|EGH62717.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. maculicola str. ES4326]
Length = 297
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 41/304 (13%), Positives = 89/304 (29%), Gaps = 32/304 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M +I A +R +T+ +T+ L Y I
Sbjct: 1 MKRI--CLFLGFALLFPALAQAAEKPLLRIGARVFTEQTMLAELTAQYLRTK-NYDVQIT 57
Query: 61 LL-AVPVTFRSLKNKGIDIFMGYWYPSLEKF---------------IAPYLEEGSIKLVA 104
+ + ++ +D+ Y SL + + + + ++
Sbjct: 58 GGLGSNLARSAQESGQLDLLWEYTGVSLVAYNHIDEKLDSAQTYARVKEVDAKKGLVWLS 117
Query: 105 ENLQGAKYMLAVNDVGFALG-----IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI 159
+ Y LA+ + + K + + G + + ++ M+
Sbjct: 118 PSKFNNTYALALPQKIADKYPQVNTMTDLTKVLKDEAKEGHVVALDTEFANRSDGLIGMV 177
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
+ +L + + RN L + + + L +
Sbjct: 178 KHYDMNLGREN----TRQMDAGLVYTALRNGQVFAGLVYTTDGRLNAFKLKVLED--DKH 231
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
F + + V+R +YLDK P+I+ LLK + ++ + + V L
Sbjct: 232 YFPDYTAAPVIRQEYLDKHPDIATLLKPLADLLDNQTMIDLNARVDVGHESPSTVAADFL 291
Query: 278 RTHP 281
R HP
Sbjct: 292 RQHP 295
>gi|257463203|ref|ZP_05627602.1| putative choline ABC transporter, osmoprotectant binding protein
[Fusobacterium sp. D12]
gi|317060791|ref|ZP_07925276.1| conserved hypothetical protein [Fusobacterium sp. D12]
gi|313686467|gb|EFS23302.1| conserved hypothetical protein [Fusobacterium sp. D12]
Length = 507
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 35/304 (11%), Positives = 82/304 (26%), Gaps = 34/304 (11%)
Query: 1 MYKILAVCL--FLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
+ +IL V L +++ + A + M ++E K
Sbjct: 206 LRRILFVFLGILAILVFSFFSKTMKREEELIIAGKLGAEPEIIIHMYQELIETETDLKVE 265
Query: 59 IK--LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPY------------------LEEG 98
+K + +LK IDI+ + + E+
Sbjct: 266 LKANFGKTSFLYEALKKGDIDIYPEFTGTIASSLLKEKEAVSNIPEEVYELAKTKIYEQD 325
Query: 99 SIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ L+ Y LAV + K ++ + +E ++ +
Sbjct: 326 HLVLLKPMKFQNTYALAVPEEFAKEKKLDKISDLKKVEKDIIAGFTLE-FHDREDGNQGL 384
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
K + + + ++ + ++ + L ++
Sbjct: 385 KKIYGLDFKVKTMEPSLR-------YQAIQHGDIQILDAYSTDSELLKYKLVLLKDDRQL 437
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
+R + L K P + +L+ I K + M + + + V R
Sbjct: 438 F--PPYQGAAFMREETLQKYPELRNILEKISGKITEEEMQRMNYEVDVKGRTAKEVAREY 495
Query: 277 LRTH 280
L +
Sbjct: 496 LVKN 499
>gi|88855182|ref|ZP_01129847.1| ABC-type glycine betaine transport, permease protein [marine
actinobacterium PHSC20C1]
gi|88815710|gb|EAR25567.1| ABC-type glycine betaine transport, permease protein [marine
actinobacterium PHSC20C1]
Length = 316
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 57/286 (19%), Positives = 102/286 (35%), Gaps = 10/286 (3%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNIKLL 62
+L + + A DA + A W + A + + ILE+ GY ++
Sbjct: 35 LLGLSACAAGGDDTAAGDAPENKDLTIAVFNGWPEGEAVSYLWKAILEDK-GYNVELEYA 93
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
V F L DI + W P + +I + A +AVN+
Sbjct: 94 DVTPIFSGLSTGDYDIALDGWLPVTHASLMEEYGA-TITDLGAWNTEAGLTVAVNEDAP- 151
Query: 123 LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
I S +++A + G +I GIEPG + ++ + L G L+ +S A ++
Sbjct: 152 --IDSLEELAANADKFGNRIVGIEPGAGLTEAVMTK-TMPTYGLDGMELLTSSTPAMLAE 208
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
++ N W PH I L E G E +++ R D P I+
Sbjct: 209 LQAALDNGENIAVTLWRPHWAYDAFPIKDLADPEGTLGDAEG-IHSFSRDTLSDDMPEIT 267
Query: 243 RLLKNIKFSVALENEMMKLILN--NKQDRQFVGRTMLRTHPDLLKN 286
+ + K L + ++ N D + + + + D +
Sbjct: 268 NWISDFKMDSELLYSLENVMYNEYEGTDFEPIVADWIAANQDYVDG 313
>gi|225175440|ref|ZP_03729435.1| Substrate-binding region of ABC-type glycine betaine transport
system [Dethiobacter alkaliphilus AHT 1]
gi|225169192|gb|EEG77991.1| Substrate-binding region of ABC-type glycine betaine transport
system [Dethiobacter alkaliphilus AHT 1]
Length = 309
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 41/274 (14%), Positives = 76/274 (27%), Gaps = 32/274 (11%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL---LAVPVTFRSLKNKGIDIFMGYW 83
PV A + M +++LEE ++ + IDI+ Y
Sbjct: 41 PVVIASKPHAEQYILGEMLAILLEENTDIPVTRNFGIAGGTSNLHPAMVSGEIDIYPEYT 100
Query: 84 YPSLEKFI----------------APYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKS 127
+ Y +E +I + + LA+
Sbjct: 101 GTGWMFVLQRDLIGDSREMFEAVRDEYQDEFNITWLEPYGFNNTFTLAIPAELAEEY--D 158
Query: 128 YQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRD 186
Q + K I+G E E + + + + + +
Sbjct: 159 LQTFSDLGKVAENLIFGAEFDFYERDDGFDALAETYNLNF------KETREMDIGLKYQS 212
Query: 187 QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLK 246
V ++ S ++ L + T+VR+D L+K P I+ L
Sbjct: 213 IGAGEVDVINAFSTDGQISLFDLVVLEDDQGFF--PTYYAATMVRTDTLEKYPEIADALG 270
Query: 247 NI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
+ + S EM + +D V R L
Sbjct: 271 VLEGQISDGEMTEMNYQVDELNRDAADVAREFLE 304
>gi|70728253|ref|YP_258002.1| glycine betaine/L-proline ABC transporter periplasmic
substrate-binding protein [Pseudomonas fluorescens Pf-5]
gi|68342552|gb|AAY90158.1| glycine betaine/L-proline ABC transporter, periplasmic
substrate-binding protein [Pseudomonas fluorescens Pf-5]
Length = 297
Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats.
Identities = 43/304 (14%), Positives = 87/304 (28%), Gaps = 32/304 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K+ + FS A +R +T+ +TS L GY T +
Sbjct: 1 MKKLSLILGCALLFSTL--AHAVEKPLIRIGARVFTEQTLLAEITSQYLRSK-GYDTRVT 57
Query: 61 LL-AVPVTFRSLKNKGIDIFMGYWYPSLEKF---------------IAPYLEEGSIKLVA 104
+ + ++ +D+ Y SL + + + + ++
Sbjct: 58 GGLGSNLARSAQESGQLDLIWEYTGVSLVAYNHIDEKLDSEQSYARVKELDAKKGLVWLS 117
Query: 105 ENLQGAKYMLAVNDVGFALG-----IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI 159
+ Y LA+ + I + + + + M+
Sbjct: 118 PSKFSNTYALALPENVAKEHPQINSISDLTQALAENTKENRLVALDTEFANRSDGMAGMV 177
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
+L + + RN L + + + L +
Sbjct: 178 KLYDMALTRKN----TRQMDAGLVYTALRNGQVFAGLVYTTDGRLNAFKLKLLED--DKH 231
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
F + + VVR YLD P ++ LK + F ++ + + + V L
Sbjct: 232 YFPDYTAAPVVRQVYLDAHPQLATDLKPLAALFDDETMRQLNARVDVDHESPSAVAADFL 291
Query: 278 RTHP 281
R HP
Sbjct: 292 RQHP 295
>gi|324993085|gb|EGC25005.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Streptococcus sanguinis
SK405]
gi|324995609|gb|EGC27521.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Streptococcus sanguinis
SK678]
gi|332361434|gb|EGJ39238.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Streptococcus sanguinis
SK1056]
Length = 506
Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats.
Identities = 32/303 (10%), Positives = 87/303 (28%), Gaps = 39/303 (12%)
Query: 3 KILAVCLFLTTFSISYARDAD-----SCTPVRFADTGWTDIAATTAMTSVILEEILG--Y 55
+ + + + + + A + M +++EE
Sbjct: 207 RTVFTAFAVLILGLGASYTPSFLPKQEKDHLVIAGKLGPEPEILMNMYKLLIEENTDMTV 266
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------E 97
+++LK IDI+ + + P + +
Sbjct: 267 TVKPNFGKTDFLYQALKKGDIDIYPEFTGTITGTLLQPAPKVSNDAKEVFEAARDGIKKQ 326
Query: 98 GSIKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
++ L+ Y +AV +K+ D+ + +L A N+
Sbjct: 327 DNLVLLNHMAYQNTYAIAVPKSVAKEYNLKTISDLKAVQDKLKAGFTL--EFNDREDGNK 384
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ + +L + + ++ + + P + L
Sbjct: 385 GLQSVYGLNLNVSTMEP-------ALRYDAIKSGEIQIMEVYSTDPEIERYQLQILED-- 435
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F +++++ L+K P + +L + K + + ++M + + + V R
Sbjct: 436 DKHLFPPYQGAPLLKAELLEKHPELEGILNKLAGKITESQMSQMNYQVGIEGKKAEAVAR 495
Query: 275 TML 277
L
Sbjct: 496 DYL 498
>gi|322516867|ref|ZP_08069766.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Streptococcus
vestibularis ATCC 49124]
gi|322124567|gb|EFX96044.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Streptococcus
vestibularis ATCC 49124]
Length = 506
Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats.
Identities = 32/303 (10%), Positives = 85/303 (28%), Gaps = 39/303 (12%)
Query: 3 KILAVCLFLTTFSISYARDAD-----SCTPVRFADTGWTDIAATTAMTSVILEEILG--Y 55
+ + + + + + A + M +++EE
Sbjct: 207 RTIFAAFAVMVIGLGVSYTPSLLSKPEKENLVIAGKLGPEPEIIANMYKILIEENTDMTV 266
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------E 97
+ +LK I I+ + E + P + +
Sbjct: 267 TVKPNFGKTTFLYEALKKGDIAIYPEFTGTVTESLLKPAPQVDHDPEAVYKAARDGIKKQ 326
Query: 98 GSIKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
++ L+ Y +AV G+K+ D+ K + +L A N+
Sbjct: 327 DNLALLKPMAYQNTYAVAVPKKIAQEYGLKTISDLKKVEGQLKAGFTL--EFNDREDGNK 384
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ L+ + + + ++ + ++ + ++ L
Sbjct: 385 GLQKVYGLHLQVSTMEP-------ALRYQAIQSGEIQITDAYSTDAELARYDLVALED-- 435
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F +++ +L K P + +L + K + ++M + + V
Sbjct: 436 DKQLFPPYQGAPLMKEAFLKKHPKLEGILNKLAGKITEKQMSQMNYQVGVEGKPADQVAH 495
Query: 275 TML 277
L
Sbjct: 496 GFL 498
>gi|325696601|gb|EGD38490.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Streptococcus sanguinis
SK160]
Length = 506
Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats.
Identities = 30/303 (9%), Positives = 91/303 (30%), Gaps = 39/303 (12%)
Query: 3 KILAVCLFLTTFSISYARDAD-----SCTPVRFADTGWTDIAATTAMTSVILEEILG--Y 55
+ + + + + + A + M +++EE
Sbjct: 207 RTVFTAFAVLILGLGASYSPSLIPKQEKDHLVIAGKLGPEPEILMNMYKLLIEENTDMTV 266
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------E 97
+++LK IDI+ + + P + +
Sbjct: 267 TVKPNFGKTDFLYQALKKGDIDIYPEFTGTITGTLLQPAPKVSNDAEEVFEAARDGIKKQ 326
Query: 98 GSIKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
++ L+ Y +AV+ +K+ D+ + +L A N+
Sbjct: 327 DNLVLLNNMAYQNTYAIAVSKSVAKEYNLKTISDLKAVQDKLKAGFTL--EFNDREDGNK 384
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ + +L + + + ++ + ++ + ++ L
Sbjct: 385 GLQSVYGLNLNVSTMEP-------ALRYQAIQSGDIQITDAYSTDAELARYDLQVLED-- 435
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F +++++ L+K P + +L + K + + ++M + + + + R
Sbjct: 436 DKHLFPPYQGAPLLKAELLEKHPELEGILNKLAGKITESQMSQMNYQVGIEGKKAEDIAR 495
Query: 275 TML 277
L
Sbjct: 496 DYL 498
>gi|254517780|ref|ZP_05129836.1| glycine betaine/L-proline ABC transporter [Clostridium sp.
7_2_43FAA]
gi|226911529|gb|EEH96730.1| glycine betaine/L-proline ABC transporter [Clostridium sp.
7_2_43FAA]
Length = 527
Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats.
Identities = 37/295 (12%), Positives = 91/295 (30%), Gaps = 32/295 (10%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LA 63
+ + + I + + + A +T+ + S +++ K K
Sbjct: 237 VLAVIVIGGVIGTSIINRNEKKITIASKNYTEQLIVGNILSELVKANTDIKVEEKFNLGG 296
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIA-----------------PYLEEGSIKLVAEN 106
VTF +LK+ D+++ Y + + + +I+L+
Sbjct: 297 SQVTFNALKSGAADVYVEYLGTGYVNILNISEPNSNREEVYNIVQERFKNDYNIELLNPL 356
Query: 107 LQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYG-IEPGNEGNQRILDMINNNKFS 165
Y +A+ + + ++ K G + G ++ +
Sbjct: 357 GFNNTYAMAITKETAEKY--NLKTVSDLAKVAGDLVIGPTIEFPNREDGLIGLEKAYNMK 414
Query: 166 LKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEAS 225
K + ++ NN V ++ + + L + F
Sbjct: 415 FKQVKPVDG------GLRYTALVNNETQVIDAFTTDGLIDKFQLVVLED--DKEFFPPYD 466
Query: 226 VYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
++R D L + P + +L + K + ++ + NK+D + V L+
Sbjct: 467 AVPIIREDTLKEFPELKNILGKLDGKLTEEKMRKLNYEVDINKRDVKTVAIEFLK 521
>gi|225181928|ref|ZP_03735362.1| Substrate-binding region of ABC-type glycine betaine transport
system [Dethiobacter alkaliphilus AHT 1]
gi|225167368|gb|EEG76185.1| Substrate-binding region of ABC-type glycine betaine transport
system [Dethiobacter alkaliphilus AHT 1]
Length = 521
Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats.
Identities = 31/278 (11%), Positives = 68/278 (24%), Gaps = 30/278 (10%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI--KLLAVPVTFRSLKNKGIDIFM 80
T + +T+ M + ++EE + V +++ ID++
Sbjct: 248 GEQTDITIGSKNFTENILLGHMMASLIEEHTDLTVERSMNMGGTEVNHQAMLRGDIDMYA 307
Query: 81 GYWYPSLEKFIA----------------PYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
Y L + Y E ++ + Y L V
Sbjct: 308 EYTGTGLMAILDQEPISDPERVYQIVSEEYEERFQMEWLQPFGFNNTYTLTVRREMAEE- 366
Query: 125 IKSYQDIAKYKKELGAKIYGI-EPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
+ + + +G E + + ++
Sbjct: 367 -LNLETFSDLIPHSENMDFGATHEFLERPDGLQGLQEVYPGLE-----FASTRGLDPGLT 420
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
++ L++ L + VVR D L + P I
Sbjct: 421 YTAVAQGDVDCIDAFSTDGRIPALDLFVLEDDRQFF--PPYFAAPVVRQDVLVRFPEIRE 478
Query: 244 LLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+L+ + ++ + + Q V LR
Sbjct: 479 VLEMLSGLLDDETMAQLNFAVDETGRSAQGVAEEFLRE 516
>gi|188533080|ref|YP_001906877.1| glycine betaine transporter periplasmic subunit [Erwinia
tasmaniensis Et1/99]
gi|188028122|emb|CAO95979.1| Glycine betaine-binding periplasmic protein [Erwinia tasmaniensis
Et1/99]
Length = 331
Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats.
Identities = 42/321 (13%), Positives = 91/321 (28%), Gaps = 44/321 (13%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRSLKNK 74
+S A V+ A + T+ T + S LE LGY + + V + S+
Sbjct: 19 VSAADLPGKGITVKPAQSTITEETFQTLLVSRALE-KLGYTVDDPSEVDYNVAYTSIAAG 77
Query: 75 GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQ----- 129
W P + + +QGA ++ +
Sbjct: 78 DTTFVATNWKPLHDDMYQAAGGDAKFYRQGTYVQGAAQGYLIDKKTAEKYHITNIGQLKD 137
Query: 130 ----DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
+ + A + G PG + I + S + + A +
Sbjct: 138 PKVAKLFDTNDDGKADLTGCTPGWGCDDVISHQVKAFGLSNTVQN-NQGNYSAMIADTIT 196
Query: 186 DQRNNIPAVFLSWEPHP----INSDLNIHYLPGGEE-----------------ISGFGEA 224
++ P ++ +W P+ + ++ +L GF
Sbjct: 197 RFKDGKPVLYYTWTPYWVSDVLVPGRDVVWLQVPFSSMPGAQKDVDTKLPNGANYGFPVN 256
Query: 225 SVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV---GRTMLRTHP 281
+++ V ++ K P ++L +K +A N + + + ++ H
Sbjct: 257 TMHIVANKEWAQKNPAAAKLFAEMKLPLADINAQNARMHQGQSSEADINAHVNGWIKAHQ 316
Query: 282 DLLKNWLIGVTTFDGQDPSRQ 302
W+ +D
Sbjct: 317 AQFDGWV--------KDALAA 329
>gi|311069893|ref|YP_003974816.1| choline ABC transporter choline-binding lipoprotein [Bacillus
atrophaeus 1942]
gi|310870410|gb|ADP33885.1| choline ABC transporter (choline-binding lipoprotein) [Bacillus
atrophaeus 1942]
Length = 313
Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats.
Identities = 29/302 (9%), Positives = 77/302 (25%), Gaps = 28/302 (9%)
Query: 1 MYKILAVCLFLTTFSISYAR---DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
+ ++ + + A S ++ ++ +M ++E KT
Sbjct: 14 IKRLAGLACLFVLLLSGCSLPGLSAASDQTIKIGAQSMSESEIIASMLGQLIEHNTDLKT 73
Query: 58 NIKLLAVPVTFRSLK--NKGIDIFMGYWY---------------PSLEKFIAPYLEEGSI 100
+ + IDI + P + +
Sbjct: 74 TTIKNLGSNAVQQQALMSGEIDIAATRYTGDALTGTLRMDAEKDPEKALKLTQREFKKRY 133
Query: 101 KLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN 160
L + G A + ++ KK+ G++ +
Sbjct: 134 DLKWYDSYGFDNTYAFTVSKELADRYHLETVSDVKKQAADLKLGVDNYWMKRKGDGYEDF 193
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISG 220
+ +K + + +N + L++ + L +
Sbjct: 194 TKTYGMKFG----GTFPMQIGLVYDAVKNGKMDIVLAYSTDGRIKSYGLKILKD--DKRF 247
Query: 221 FGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
F VV L + P + +++ + + E+ + ++ V + L+
Sbjct: 248 FPPYDCSPVVPEKVLKEHPELEGIIQKMLGQIDTETMQELNYEVDGKLKEPSVVAKEYLQ 307
Query: 279 TH 280
H
Sbjct: 308 KH 309
>gi|257089104|ref|ZP_05583465.1| ABC transporter permease [Enterococcus faecalis CH188]
gi|312904306|ref|ZP_07763468.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0635]
gi|256997916|gb|EEU84436.1| ABC transporter permease [Enterococcus faecalis CH188]
gi|310632402|gb|EFQ15685.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0635]
gi|315161990|gb|EFU06007.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0645]
gi|315578748|gb|EFU90939.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0630]
Length = 505
Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats.
Identities = 37/283 (13%), Positives = 90/283 (31%), Gaps = 34/283 (12%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGID 77
+ + + A + M ++EE + +K + +LK+ ID
Sbjct: 229 QTSSKEKQLTIAGKLGAEPDIIINMYKALIEENSDIQVTLKPNFGKTTFLYNALKSDEID 288
Query: 78 IFMGYWYPSLEKFIAPYLE------------------EGSIKLVAENLQGAKYMLAVNDV 119
++ + +E F+ + + ++ L+ Y +AV
Sbjct: 289 LYPEFTGTVIETFLKNPPQLDNQPQVVYEAARAGLKNQENLTLLKPMRYENTYAVAVKRS 348
Query: 120 GFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+K+ D+ K +L +D + K + + L +
Sbjct: 349 FAKAHQLKTISDLQKISNQLK---------AGFTLEFIDRQDGYKGLQEKYHLNLNVQSM 399
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+ + N V ++ ++ L + + F ++++ L+K
Sbjct: 400 EPALRYQAINNGEVNVIDAYSTDSELKQYDLVTLED--DQALFPPYQGAPLIKTATLEKY 457
Query: 239 PNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
P ++ +L + K + +EM + QD V + L+
Sbjct: 458 PELAEILNKLAGKINEEEMSEMNYQVNVEGQDPSIVAKDYLKE 500
>gi|156742498|ref|YP_001432627.1| glycine betaine ABC transporter substrate-binding protein
[Roseiflexus castenholzii DSM 13941]
gi|156233826|gb|ABU58609.1| Substrate-binding region of ABC-type glycine betaine transport
system [Roseiflexus castenholzii DSM 13941]
Length = 316
Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats.
Identities = 44/312 (14%), Positives = 89/312 (28%), Gaps = 41/312 (13%)
Query: 3 KILAVCLFLTTFSISYARDADS--------------CTPVRFADTGWTDIAATTAMTSVI 48
+ L ++ TPVR +T+ M ++
Sbjct: 6 RFFVAFTTLVGLVLAACSAPAQTTQPTAVPQPAPADATPVRIGSKNFTEAILVAEMYALA 65
Query: 49 LEEILGYKTNIKL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP------------- 93
LE+ G + K A PV +L N ID++ Y L + +
Sbjct: 66 LEDA-GIRVERKFNLGATPVAHTALVNGEIDLYPEYTSTGLLEVLKQAPIADARGILEAV 124
Query: 94 ---YLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNE 150
Y E+ + + + LA+ + + G G P
Sbjct: 125 RKGYEEQFQVTWLEPSPFNNTNALAMTRQRAEE--LGIRTYSDLVAHSGDLKLGGPPEFP 182
Query: 151 GNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIH 210
+ ++ F K + V +++ + L +
Sbjct: 183 EREDTKGLMAAYGFDPKFIEENFVQLDTG-ALRYEALTKGDIDVVVAFGTDGQINGLGLA 241
Query: 211 YLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILN-NKQ 267
L + + + + V+R D L P I+ L + + + + + + K+
Sbjct: 242 LLED--DKNYYPIYQIAPVIRQDALAANPQIAETLNRLAPLLTNDVMSGLNWQVDGPEKK 299
Query: 268 DRQFVGRTMLRT 279
+ V RT L+
Sbjct: 300 EIADVARTFLQQ 311
>gi|168494224|ref|ZP_02718367.1| choline transporter [Streptococcus pneumoniae CDC3059-06]
gi|183575807|gb|EDT96335.1| choline transporter [Streptococcus pneumoniae CDC3059-06]
Length = 506
Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats.
Identities = 34/296 (11%), Positives = 84/296 (28%), Gaps = 21/296 (7%)
Query: 3 KILAVCLFLTTFSISYARDAD-----SCTPVRFADTGWTDIAATTAMTSVILEEI--LGY 55
+ + L + + + A + M +++EE +
Sbjct: 207 RTIFSGFALVALLLGLSYSPALLVQKEKENLVIAGKIGPEPEILANMYKLLIEENTSMTA 266
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE----EGSIKLVAENLQGAK 111
+ +LK IDI+ + E + P + + VA + +
Sbjct: 267 TVKPNFGKTSFLYEALKKGDIDIYPEFTGTVTESLLQPSPKVSHEPEQVYQVARDGIAKQ 326
Query: 112 YMLAVNDVGFALGIKSYQDIAKYKKELGAKIYG------IEPGNEGNQRILDMINNNKFS 165
LA + K +E G K + D + NK
Sbjct: 327 DHLAYLKPMSYQNTYAVAVSKKIAQEYGLKTISDLKKVEGQLKAGFTLEFNDREDGNKGL 386
Query: 166 LKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEAS 225
+ L + + ++ + ++ ++ L + F
Sbjct: 387 QSMYGLNLNVATMEPALRYQAIQSGDIQITDAYSTDAELERYDLQVLED--DKQLFPPYQ 444
Query: 226 VYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+++ L K P + R+L + K + + +++ + + + V + L+
Sbjct: 445 GAPLMKEALLKKHPELERVLNTLAGKITESQMSQLNYQVGVEGKSAKQVAKEFLQE 500
>gi|168574951|ref|ZP_02720914.1| choline transporter [Streptococcus pneumoniae MLV-016]
gi|183578802|gb|EDT99330.1| choline transporter [Streptococcus pneumoniae MLV-016]
Length = 506
Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats.
Identities = 38/303 (12%), Positives = 90/303 (29%), Gaps = 35/303 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDAD-SCTPVRFADTGWTDIAATTAMTSVILEEI--LGYKT 57
++ A+ L S S A A + A + M +++EE +
Sbjct: 209 IFSGFALVALLLGLSYSPALLAQKEKENLIIAGKIGPEPEILANMYKLLIEENTSMTATV 268
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------EGS 99
+ +LK IDI+ + E + P + +
Sbjct: 269 KPNFGTTSFLYEALKKGDIDIYPEFTGTVTESLLQPSPKVSHEPEQVYQVARDGIAKQDH 328
Query: 100 IKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ + Y +AV G+K+ D+ K + +L D
Sbjct: 329 LAYLKPMSYQNTYAVAVPKKIAQEYGLKTISDLKKVEGQLK---------AGFTLEFNDR 379
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ NK + L + + ++ + ++ ++ L +
Sbjct: 380 EDGNKGLQSMYGLNLNVATMQPALRYQAIQSGDIQITDAYSTDAELERYDLQVLED--DK 437
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F +++ L K + R+L + K + + +++ + + + V +
Sbjct: 438 QLFPPYQGAPLMKEALLKKHSELERVLNKLAGKITESQMSQLNYQVGVEGKSAKQVAKEF 497
Query: 277 LRT 279
L+
Sbjct: 498 LQE 500
>gi|28871709|ref|NP_794328.1| glycine betaine/choline ABC transporter periplasmic
substrate-binding protein [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213966734|ref|ZP_03394885.1| glycine betaine/choline OpuC ABC transporter, periplasmic
substrate-binding protein [Pseudomonas syringae pv.
tomato T1]
gi|301383243|ref|ZP_07231661.1| glycine betaine/choline OpuC ABC transporter, periplasmic
substrate-binding protein [Pseudomonas syringae pv.
tomato Max13]
gi|302061445|ref|ZP_07252986.1| glycine betaine/choline OpuC ABC transporter, periplasmic
substrate-binding protein [Pseudomonas syringae pv.
tomato K40]
gi|302133490|ref|ZP_07259480.1| glycine betaine/choline OpuC ABC transporter, periplasmic
substrate-binding protein [Pseudomonas syringae pv.
tomato NCPPB 1108]
gi|28854961|gb|AAO58023.1| glycine betaine/choline OpuC ABC transporter, periplasmic
substrate-binding protein [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213928584|gb|EEB62128.1| glycine betaine/choline OpuC ABC transporter, periplasmic
substrate-binding protein [Pseudomonas syringae pv.
tomato T1]
gi|331019724|gb|EGH99780.1| glycine betaine/choline OpuC ABC transporter, periplasmic
substrate-binding protein [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 297
Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats.
Identities = 41/304 (13%), Positives = 89/304 (29%), Gaps = 32/304 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M KI A +R +T+ +T+ L Y I
Sbjct: 1 MKKI--CLFLGFALLFPAFAQAAEKPLLRVGARVFTEQTMLAELTAQYLRTK-NYDVQIT 57
Query: 61 LL-AVPVTFRSLKNKGIDIFMGYWYPSLEKF---------------IAPYLEEGSIKLVA 104
+ + ++ +D+ Y SL + + + + ++
Sbjct: 58 GGLGSNLARSAQESGQLDLLWEYTGVSLVAYNHIDEKLDSAQTYARVKEVDAKKGLVWLS 117
Query: 105 ENLQGAKYMLAVNDVGFALG-----IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI 159
+ Y LA+ + + K + + G + + ++ M+
Sbjct: 118 PSKFNNTYALALPQKIADKYPQVNTMTDLTKVLKDEAKEGHLVALDTEFANRSDGLVGMV 177
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
+ +L + + +N L + + + L +
Sbjct: 178 KHYGMNLGRENTRQMDSG----LVYTALQNGQVFAGLVYTTDGRLNAFKLKVLED--DKH 231
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
F + + V+R +YLDK P+I+ LLK + ++ + + V L
Sbjct: 232 YFPDYTAAPVIRQEYLDKHPDIATLLKPLAELLDNQTMIDLNARVDVGHESPSSVAADFL 291
Query: 278 RTHP 281
R HP
Sbjct: 292 RQHP 295
>gi|310778348|ref|YP_003966681.1| Substrate-binding region of ABC-type glycine betaine transport
system [Ilyobacter polytropus DSM 2926]
gi|309747671|gb|ADO82333.1| Substrate-binding region of ABC-type glycine betaine transport
system [Ilyobacter polytropus DSM 2926]
Length = 296
Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats.
Identities = 33/301 (10%), Positives = 89/301 (29%), Gaps = 31/301 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K++ + + A + +T+ + +V++E YKT+
Sbjct: 1 MAKLMKSIVIVMIIMAFAACGKKESEVEIINIGHKNYTEQRLLGQIFAVMIENHTDYKTD 60
Query: 59 IKL-LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEE----------------GSIK 101
+K + F +LK+ GID++ Y + + + ++
Sbjct: 61 VKELGGTQIAFEALKSGGIDLYPEYTGSAYAALLNESGLKDPEKIYNLVKDRTKTLYNLD 120
Query: 102 LVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMIN 160
++ + L+V + + + K+ G + G E +L +
Sbjct: 121 YLSPLGFNNAWTLSVTPETAEKY--NLKTFSDLAKQSGELVIGASMEFFEREDAMLGLKK 178
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISG 220
+ + + ++ V ++ + L +
Sbjct: 179 TYEGMEFKEG-----KALNGGLRYTAIKSGKIDVTDAYGTDGKLVTYKLITLEDDKNFFL 233
Query: 221 FGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
+ ++ ++ P ++ L+ + +F+ M I + V L+
Sbjct: 234 --PYHIAPLLNGEFAKIHPEVAESLERLSGQFNETEMQNMNYRIDEEGIPARAVAEEFLK 291
Query: 279 T 279
Sbjct: 292 E 292
>gi|296877218|ref|ZP_06901258.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, permease protein [Streptococcus
parasanguinis ATCC 15912]
gi|296431738|gb|EFH17545.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, permease protein [Streptococcus
parasanguinis ATCC 15912]
Length = 506
Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats.
Identities = 33/303 (10%), Positives = 86/303 (28%), Gaps = 39/303 (12%)
Query: 3 KILAVCLFLTTFSISYARDAD-----SCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
+ + + + + + A + M +++EE
Sbjct: 207 RTIVAAFAVMLLGLGASYAPSMMPQKEKENLVIAGKLGPEPEILMNMYKLLIEENSDMTV 266
Query: 58 --NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------E 97
+++LK IDI+ + + P + +
Sbjct: 267 MVKPNFGKTDFLYQALKKGDIDIYPEFTGTITSSLLQPAPKVSNDSEEVFKAARDGIKKQ 326
Query: 98 GSIKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
++ L+ Y +AV +K+ D+ K + +L A N+
Sbjct: 327 DNLALLKPMAYQNTYAIAVPKSIAKEYNLKTISDLKKVQDKLKAGFTL--EFNDREDGNK 384
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ + +L + + + + + ++ P + ++ L
Sbjct: 385 GLQSVYGLNLNVATMEP-------ALRYEAIQQDNIQITDAYSTDPEIAQYDLVVLED-- 435
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
F +++ L K P + +L + K + + ++M + + V R
Sbjct: 436 NQHLFPPYQGAPLMKEALLKKHPELEGILNKLSGKITESQMSQMNYQVGVEGEPAAKVAR 495
Query: 275 TML 277
L
Sbjct: 496 DFL 498
>gi|257482125|ref|ZP_05636166.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. tabaci ATCC 11528]
gi|289628339|ref|ZP_06461293.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. aesculi str. NCPPB3681]
gi|289650137|ref|ZP_06481480.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. aesculi str. 2250]
gi|330987532|gb|EGH85635.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. lachrymans str.
M301315]
gi|331011406|gb|EGH91462.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. tabaci ATCC 11528]
Length = 297
Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats.
Identities = 41/304 (13%), Positives = 89/304 (29%), Gaps = 32/304 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M +I A +R +T+ +T+ L Y I
Sbjct: 1 MKRI--CLFLGLALLFPAFAQAADKPLLRVGARVFTEQTMLAELTAQYLRTK-NYDVQIT 57
Query: 61 LL-AVPVTFRSLKNKGIDIFMGYWYPSLEKF---------------IAPYLEEGSIKLVA 104
+ + ++ +D+ Y SL + + + + ++
Sbjct: 58 GGLGSNLARSAQESGQLDLLWEYTGVSLVAYNHIDEKLDSAQTYARVKEVDAKKGLVWLS 117
Query: 105 ENLQGAKYMLAVNDVGFALG-----IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI 159
+ Y LA+ + + K + + G + + ++ M+
Sbjct: 118 PSKFNNTYALALPQKVADKYPQVNTMTDLTKVLKDEAKEGHVVALDTEFANRSDGLIGMV 177
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
+ +L + + RN L + + + L +
Sbjct: 178 KHYDMNLGREN----TRQMDAGLVYTALRNGQVFAGLVYTTDGRLNAFKLKVLED--DKH 231
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
F + + V+R +YLDK P+I+ LLK + ++ + + V L
Sbjct: 232 YFPDYTAAPVIRQEYLDKHPDIATLLKPLADLLDNQTMIDLNARVDVGHESPSTVAADFL 291
Query: 278 RTHP 281
R HP
Sbjct: 292 RQHP 295
>gi|16306464|gb|AAL17617.1|AF432069_2 BilEB [Listeria monocytogenes]
Length = 504
Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats.
Identities = 38/299 (12%), Positives = 91/299 (30%), Gaps = 34/299 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
++ + LT I A + A + M +++E+ K N+K
Sbjct: 212 TISAGILLTAAIIVVPYFASDKKEITVAGKLGAEPEILINMYKLVIEDETDLKVNVKPNM 271
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP-----------------YLEEGSIKLVA 104
F +LK+ IDI+ + LE F+ ++ + +
Sbjct: 272 GKTSFVFNALKSGDIDIYPEFTGTVLETFLKENAKTHDPEEVYTQARDGLAKDFDMTYLK 331
Query: 105 ENLQGAKYMLAV-NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK 163
Y LAV + ++ D+ ++ D + K
Sbjct: 332 PMKYNNTYALAVSPEFAKENNLEKISDLGPVSDQVK---------AGFTLEFKDRSDGYK 382
Query: 164 FSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
+ L ++ ++ ++ + ++ + + L +++
Sbjct: 383 GIQDKYGLTFSNLKTMEPKLRYNAIKSGDINLLDAYSTDSELAQYKLKVLEDDQQLF--P 440
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++ + LDK P + + L + K + +M + N + V + L+
Sbjct: 441 PYQGAPLMLTKTLDKYPELKKPLNKLAGKITDDEMRKMNYEVNVNGKSAYTVAKDYLKD 499
>gi|325686152|gb|EGD28203.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Lactobacillus delbrueckii
subsp. lactis DSM 20072]
Length = 506
Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats.
Identities = 47/307 (15%), Positives = 90/307 (29%), Gaps = 39/307 (12%)
Query: 2 YKILAVCLFLTTFSISYARDAD----SCTPVRFADTGWTDIAATTAMTSVILE-EILGYK 56
+++ A L + + ++ V A ++ M ++E + K
Sbjct: 208 FRVTAAVLAIFAIGLGVSQAPKHFTPKQEEVVIAGKLGSEPDILINMYKDLIERDNPHVK 267
Query: 57 TNIK--LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL------------------E 96
+K F +LK IDI+ + L+ + E
Sbjct: 268 VTLKNNFGGTSFLFNALKTGKIDIYPEFTGTVLQGLAKKKVATPHDPAKTYQLAKKLMAE 327
Query: 97 EGSIKLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRI 155
E + + Y LAV IKS D+AK L A
Sbjct: 328 EDQLTYLPPMNYQNGYDLAVTKAFAKKHNIKSLSDLAKVDASLTAAF--DPDFANQQDGY 385
Query: 156 LDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG 215
L + + K + + + + AV + P ++ L
Sbjct: 386 LGLKKEYGLNFKVKTMEP-------ALRYKAIASGKVAVVDGYTTDPQIKQYDLVALKD- 437
Query: 216 EEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVG 273
+ S F ++++ + K P + + L + K + A EM + + V
Sbjct: 438 -DKSFFPPYQGAPLLKNSFAQKHPGVVKSLNKLAGKITEAEMQEMNYKVTVKHESASKVA 496
Query: 274 RTMLRTH 280
L+ H
Sbjct: 497 HQYLKQH 503
>gi|330873458|gb|EGH07607.1| glycine betaine/L-proline ABC transporter periplasmic
substrate-binding protein [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 297
Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats.
Identities = 45/304 (14%), Positives = 92/304 (30%), Gaps = 32/304 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M +I S A +R +T+ + +T+ L GY +
Sbjct: 1 MKRI--CLFLGFALLFSAFAQAAEKPLLRVGARVFTEQTILSELTAQYLRTK-GYDVQVT 57
Query: 61 LL-AVPVTFRSLKNKGIDIFMGYWYPSLEKF---------------IAPYLEEGSIKLVA 104
+ + ++ +D+ Y SL + + + + ++
Sbjct: 58 GGLGSSLARSAQESAQLDLIWEYTGVSLVNYNHVDEKLDSEQTYARVKELDAKKGLVWLS 117
Query: 105 ENLQGAKYMLAVNDVGFALG-----IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI 159
+ Y LA+ + + K + + G + + +L M+
Sbjct: 118 PSKFSNTYALALPQKIADKYPQVNTMTDLTKVLKDEAKEGHLVALDTEFANRSDGLLGMV 177
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
+ +L + + RN L + + + L +
Sbjct: 178 KHYDMNLGREN----TRQMDAGLVYTALRNGQVFAGLVYTTDGRLNAFKLKVLED--DKR 231
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
F + + V+R DYLDK P+I+ LLK + ++ I + V L
Sbjct: 232 YFPDYTAAPVIRQDYLDKHPDIAPLLKPLADLLDTQTMIDLNARIDVGHESPSKVAADFL 291
Query: 278 RTHP 281
R HP
Sbjct: 292 RQHP 295
>gi|217964430|ref|YP_002350108.1| similiar to glycine betaine/carnitine/choline ABC transporter
[Listeria monocytogenes HCC23]
gi|217333700|gb|ACK39494.1| similiar to glycine betaine/carnitine/choline ABC transporter
[Listeria monocytogenes HCC23]
gi|307571005|emb|CAR84184.1| bile exclusion locus B [Listeria monocytogenes L99]
Length = 504
Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats.
Identities = 39/299 (13%), Positives = 91/299 (30%), Gaps = 34/299 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
++ + LT I A + A + M +++E+ K N+K
Sbjct: 212 TISAGILLTAAIIVVPYFASDKKEITIAGKLGAEPEILINMYKLVIEDETDLKVNVKPNM 271
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP-----------------YLEEGSIKLVA 104
F +LK+ IDI+ + LE F+ ++ + +
Sbjct: 272 GKTSFVFNALKSGDIDIYPEFTGTVLETFLKENAKTHDPEEVYTQARDGLAKDFDMTYLK 331
Query: 105 ENLQGAKYMLAV-NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK 163
Y LAV + ++ D+ ++ D + K
Sbjct: 332 PMKYNNTYALAVSPEFAKENNLEKISDLGPVSDQVK---------AGFTLEFKDRSDGYK 382
Query: 164 FSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
+ L ++ ++ ++ + ++ + + L E++
Sbjct: 383 GIQDKYGLTFSNLKTMEPKLRYNAIKSGDINLLDAYSTDSELAQYKLKVLEDDEQLF--P 440
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++ + LDK P + + L + K + +M + N + V + L+
Sbjct: 441 PYQGAPLMLTKTLDKYPELKKPLNKLAGKITDDEMRKMNYEVNVNGKSAYTVAKEYLQD 499
>gi|254451956|ref|ZP_05065393.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Octadecabacter antarcticus
238]
gi|198266362|gb|EDY90632.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Octadecabacter antarcticus
238]
Length = 303
Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats.
Identities = 38/301 (12%), Positives = 88/301 (29%), Gaps = 32/301 (10%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
A V W AAT + + +E+ LG + ++ P+ F ++ + +
Sbjct: 4 STAAIAQDVVIGVPNWASAAATANILKIAIEDNLGLEVALQNGTNPIIFEAMDTGSMHVH 63
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG---------FALGIKSYQD 130
W P+ + ++ E + N + + V L
Sbjct: 64 PEVWMPNQQNLYDTFVTERGSVAMNPNTVLSDQNICVTRATQERTGIVALSELTDPIMSA 123
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
+ +++ G + ++ +++E E + +Q+ +
Sbjct: 124 NFDTDGDGMGEMWIGGAGWASTNVEKIRAQSYGYAET-MQMMEMDEALAMAQVDAAIAQD 182
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEI----------------------SGFGEASVYT 228
VF + PH + S ++ L + + ++
Sbjct: 183 KNIVFYCYTPHHMFSLYDLVKLTEPAYDAAKWNVVQPTDDPNWLEVSTAPTAWDATRLHV 242
Query: 229 VVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
D P + +L N+ F N M+ + +D R + + L+ W
Sbjct: 243 FYSVALADTQPLAATMLANVSFDTEQVNGMVYALSVEGKDPAVFAREWVDANGSLVDAWF 302
Query: 289 I 289
Sbjct: 303 K 303
>gi|87121998|ref|ZP_01077883.1| glycine betaine ABC transporter, periplasmic glycine
betaine-binding protein [Marinomonas sp. MED121]
gi|86162796|gb|EAQ64076.1| glycine betaine ABC transporter, periplasmic glycine
betaine-binding protein [Marinomonas sp. MED121]
Length = 342
Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats.
Identities = 34/321 (10%), Positives = 89/321 (27%), Gaps = 35/321 (10%)
Query: 7 VCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVP 65
L +++ + + + + + LE LGY+ K
Sbjct: 23 SALTMSSIASAAEAMPGKGVEITPIFPTIAEERFRGEIAIAGLEA-LGYEVEEPKETEYA 81
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
+L D + W + F + ++ + G ++
Sbjct: 82 TLMLALSYGDADFSVHAWEELHKTFYKKAGGDDTLVKAGNVIPGVLQGYLIDKKTAEKHN 141
Query: 126 KSY---------QDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ + + A + G PG I I S
Sbjct: 142 ITQLTDLKKPEIAKLFDADDDGKADLTGCNPGWGCELVIDHHIEAYGLGDT-VNHNRGSY 200
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHP----INSDLNIHYLPGGE---------------- 216
A + ++ +W P + + ++ +L +
Sbjct: 201 FALMADTITRYNEGQSILYYTWVPQWIAGVLVENEDVVWLEVPQTDLPDGNNSVNTSFNG 260
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV---G 273
+ GF + +++ D+ ++ P ++ L ++ S + E+ + N ++ + +
Sbjct: 261 KNLGFAVDQIQSILNKDFAEENPAATKFLSLVQISASDESAQNLKMQNGEKSMKDIKRHA 320
Query: 274 RTMLRTHPDLLKNWLIGVTTF 294
+ + + +WL T
Sbjct: 321 QEWISANQAKYDSWLEAARTA 341
>gi|15903719|ref|NP_359269.1| ABC transporter membrane-spanning permease - choline transporter
[Streptococcus pneumoniae R6]
gi|116516671|ref|YP_817092.1| choline transporter (glycine betaine transport system permease
protein) [Streptococcus pneumoniae D39]
gi|15459351|gb|AAL00480.1| ABC transporter membrane-spanning permease - choline transporter
[Streptococcus pneumoniae R6]
gi|116077247|gb|ABJ54967.1| choline transporter (glycine betaine transport system permease
protein) [Streptococcus pneumoniae D39]
Length = 506
Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats.
Identities = 39/303 (12%), Positives = 90/303 (29%), Gaps = 35/303 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDAD-SCTPVRFADTGWTDIAATTAMTSVILEEI--LGYKT 57
++ A+ L S S A A + A + M +++EE +
Sbjct: 209 IFSGFALMALLLGLSYSPALLAQKEKENLIIAGKIGPEPEILANMYKLLIEENTSMTATV 268
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------EGS 99
+ +LK IDI+ + E + P + +
Sbjct: 269 KPNFGTTSFLYEALKKGDIDIYPEFTGTVTESLLQPSPKVSHEPEQVYQVARDGIAKQDH 328
Query: 100 IKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ + Y +AV G+K+ D+ K + +L D
Sbjct: 329 LAYLKPMSYQNTYAVAVPKKIAQEYGLKTISDLKKVEGQLK---------AGFTLEFNDR 379
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ NK + L + + + + ++ ++ L +
Sbjct: 380 EDGNKGLQSMYGLNLNVATMQPALRYQAIHSGDIQITDAYSTDAELERYDLQVLED--DK 437
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F +++ L K P + R+L + K + + +++ + + + V +
Sbjct: 438 QLFPPYQGAPLMKEALLKKHPELERVLNTLAGKITESQMSQLNYQVGVEGKSAKQVAKEF 497
Query: 277 LRT 279
L+
Sbjct: 498 LQE 500
>gi|330686293|gb|EGG97903.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Staphylococcus epidermidis
VCU121]
Length = 504
Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats.
Identities = 38/303 (12%), Positives = 88/303 (29%), Gaps = 35/303 (11%)
Query: 2 YKILAVCLFLTTFSISYARDA---DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
K+L V + + + A ++ + T M +++E+
Sbjct: 207 KKLLIVLGTMVIIIMIAIIVPLFAQKGDKITLAGKLGSEPSVITNMYKILIEQDTDDTVE 266
Query: 59 IK--LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP-----------------YLEEGS 99
+K + F +LK+ ID ++ + L + ++ +
Sbjct: 267 VKDGMGKTAFLFNALKSDDIDGYLEFTGTVLGELTKEDLKSKQEPQVYQQAKQSLEKKYN 326
Query: 100 IKLVAENLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ ++ Y LAV IK+ D++K + +L N+ +
Sbjct: 327 MTMLKPMKYNNTYALAVKRDFAKKNHIKTIGDLSKVEDKLKPGFTL--EFNDRPDGFKAV 384
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ I ++ + ++ ++ L +
Sbjct: 385 KKAYGLN------ISNAKTMEPKLRYTAVEKGDINLIDAYSTDAELKQYDMVVLKD--DK 436
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F + + ++ P + + L + K S EM + KQD V +
Sbjct: 437 HVFPPYQGAPMFKEKFIKDHPEVKKPLNKLAGKISDEEMQEMNYKVTVKKQDPYQVAKDY 496
Query: 277 LRT 279
L
Sbjct: 497 LEK 499
>gi|315282310|ref|ZP_07870745.1| BilEB [Listeria marthii FSL S4-120]
gi|313614046|gb|EFR87755.1| BilEB [Listeria marthii FSL S4-120]
Length = 504
Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats.
Identities = 38/299 (12%), Positives = 92/299 (30%), Gaps = 34/299 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
++ + LT I A + A + M +++E+ K N+K
Sbjct: 212 TISAGILLTAAIIVVPYFASDKKEITIAGKLGAEPEILINMYKLVIEDETDLKVNVKPNM 271
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP-----------------YLEEGSIKLVA 104
F +LK+ IDI+ + LE F+ ++ ++ +
Sbjct: 272 GKTSFVFNALKSGDIDIYPEFTGTVLETFLKENAKTHDPEQVYTQARDGLAKDFNMTYLK 331
Query: 105 ENLQGAKYMLAV-NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK 163
Y LAV + ++ D+ ++ D + K
Sbjct: 332 PMKYNNTYALAVSPEFAKENNLEKISDLGPVSDQVK---------AGFTLEFKDRSDGYK 382
Query: 164 FSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
+ L ++ ++ ++ + ++ + + L +++
Sbjct: 383 GIQDKYGLTFSNLKTMEPKLRYNAIKSGDINLLDAYSTDSELAQYKLKVLEDDQQLF--P 440
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++ + LDK P + + L + K + +M + N + V + L+
Sbjct: 441 PYQGAPLMLTKTLDKYPELKKPLNKLAGKITDDEMRKMNYEVNVNGKSAYTVAKDYLQD 499
>gi|313836405|gb|EFS74119.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL037PA2]
gi|314928869|gb|EFS92700.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL044PA1]
gi|314971253|gb|EFT15351.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL037PA3]
gi|328906384|gb|EGG26159.1| ABC transporter, substrate-binding protein, QAT family
[Propionibacterium sp. P08]
Length = 347
Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats.
Identities = 55/276 (19%), Positives = 98/276 (35%), Gaps = 11/276 (3%)
Query: 19 ARDADSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGID 77
A D+ T + W + AT + +L++ GY IK V +++ ID
Sbjct: 74 AMKPDTNTTLTIGAFNGWDESWATAGLIKQVLKKD-GYTVTIKGFDAGVGYQATAGGDID 132
Query: 78 IFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKE 137
I W P + ++ + A +AVN A I + K
Sbjct: 133 IITDSWLPVTQAGYIRKYG-PKLENLGCWYDNANLTIAVNKDSPAHSIAD---LKKTGSA 188
Query: 138 LGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLS 197
G IY IEPG E + I + L L +S A +Q+++ +
Sbjct: 189 YGNVIYSIEPGAEMTKTIATQTL-PMYGLSNIVLKTSSTPAMLAQLQKATKAGSNVAVTL 247
Query: 198 WEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENE 257
W PH + L + E +Y+ R + P ++L++N+ A +
Sbjct: 248 WRPHWAYDAYPVRDLADPKNAISHAE-LIYSFGRPGFEKDHPKAAQLIRNLAIDDAHLSS 306
Query: 258 MMKLILN---NKQDRQFVGRTMLRTHPDLLKNWLIG 290
+ L++N + + +P + +WL G
Sbjct: 307 LEHLMVNITKRGGQQDTAISRWMADNPGWVDDWLAG 342
>gi|257069582|ref|YP_003155837.1| ABC-type proline/glycine betaine transporter periplasmic component
[Brachybacterium faecium DSM 4810]
gi|256560400|gb|ACU86247.1| ABC-type proline/glycine betaine transport system, periplasmic
component [Brachybacterium faecium DSM 4810]
Length = 319
Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats.
Identities = 44/262 (16%), Positives = 90/262 (34%), Gaps = 11/262 (4%)
Query: 27 PVRFADTG-WTDIAATTAMTSVILEEILGYKTNIKL-LAVPVTFRSLKNKGIDIFMGYWY 84
+ WTD +T + L +GY + V + L +D+F W
Sbjct: 59 TITLGYIPSWTDGLSTAYLLDNRL-TAMGYTVEHEPITEAGVLYAGLAQGDVDMFPSAWP 117
Query: 85 PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYG 144
+ I+ + +GA L+V + I S +++ G +I G
Sbjct: 118 EVTHASYMEEYGDS-IEDLVSYYEGAVLNLSVPEYV---DISSIEELVGQADRFGGRIVG 173
Query: 145 IEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPIN 204
IEPG + + + + L + L+ +S A +++ V W P
Sbjct: 174 IEPGAGLTEATQESV-IPGYGLDDYELVTSSTPAMITELENAIDAEEDIVVTLWTPFWAM 232
Query: 205 SDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILN 264
++ L E G E+ ++ + R + P+++ + + + ++N
Sbjct: 233 PAYSMKALEDPEGHFGEPES-LHHLGRDGFASDFPDVAEWIAGATMTDEEFGSLEDKVVN 291
Query: 265 N--KQDRQFVGRTMLRTHPDLL 284
+ L +PD+L
Sbjct: 292 EFGEGQEAEAVEAWLEENPDVL 313
>gi|228477409|ref|ZP_04062045.1| ABC transporter membrane-spanning permease [Streptococcus
salivarius SK126]
gi|228250844|gb|EEK10032.1| ABC transporter membrane-spanning permease [Streptococcus
salivarius SK126]
Length = 509
Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats.
Identities = 33/306 (10%), Positives = 87/306 (28%), Gaps = 42/306 (13%)
Query: 3 KILAVCLFLTTFSISYARDAD-----SCTPVRFADTGWTDIAATTAMTSVILEEI--LGY 55
+ + + + + + A + M +++EE +
Sbjct: 207 RTIFAAFAIMVLGLGASYAPSMMPQKEKENLVIAGKLGPEPEILMNMYKLLIEENSDMTV 266
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------E 97
+++LK IDI+ + + P + +
Sbjct: 267 TVKPNFGKTDFLYQALKKGDIDIYPEFTGTITSSLLQPAPKVSNDSKEVFEAARDGIKKQ 326
Query: 98 GSIKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
++ L+ Y +AV +K+ D+ K + +L A N+
Sbjct: 327 DNLALLKPMAYQNTYAIAVPKSIAKEYHLKTISDLKKVQDKLKAGFTL--EFNDREDGNK 384
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ + +L + + + + ++ P + ++ L
Sbjct: 385 GLQSVYGLNLNVATMEP-------ALRYEAIQQGNIQITDAYSTDPEIAQYDLVVLED-- 435
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEM---MKLILNNKQDRQF 271
+ F +++ L K P + +L + K + + ++M + +
Sbjct: 436 DQHLFPPYQGAPLMKEALLKKHPELEGILNKLSGKITESQMSQMSQMNYQVGVEGKPATQ 495
Query: 272 VGRTML 277
V R L
Sbjct: 496 VARDFL 501
>gi|227509980|ref|ZP_03940029.1| glycine betaine ABC superfamily ATP binding cassette transporter,
binding protein [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
gi|227190586|gb|EEI70653.1| glycine betaine ABC superfamily ATP binding cassette transporter,
binding protein [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
Length = 300
Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats.
Identities = 32/162 (19%), Positives = 60/162 (37%), Gaps = 2/162 (1%)
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
K++ I GIE G + ++L +S A S + + R P V
Sbjct: 39 KQINYTITGIEAGAGEMATTQKAMKAYGLDKGNWQLQTSSTAAMLSTLGKSIRYKQPIVI 98
Query: 196 LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
W PH + + + +L + I G E + T+VR P LL +
Sbjct: 99 TGWTPHWMFTKYKLKFLKDPKNIYGKTE-DINTIVRKGLKKDKPEAYELLNRFHWRPEQM 157
Query: 256 NEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQ 297
+ +M + N+ + + ++ + + +W G+ GQ
Sbjct: 158 SSVMLRV-NHGESPRKAAGDWIKQNQAQVNSWTKGIKHVHGQ 198
Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 2/103 (1%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWY 84
++ W A+T + + L +GYK I+ + + + S+ K D + W
Sbjct: 197 GQKLKLTYVAWDSEIASTNVVANAL-RSIGYKVTIQAMELQPMWTSIATKAADGTVSAWL 255
Query: 85 PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKS 127
P+ + +G + ENL GAK LAV + S
Sbjct: 256 PNTQGLYYN-DFKGRFDDLGENLHGAKVGLAVPTYMKNVNSIS 297
>gi|254461549|ref|ZP_05074965.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Rhodobacterales bacterium
HTCC2083]
gi|206678138|gb|EDZ42625.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Rhodobacteraceae bacterium
HTCC2083]
Length = 321
Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats.
Identities = 42/312 (13%), Positives = 86/312 (27%), Gaps = 34/312 (10%)
Query: 10 FLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFR 69
L A A + V+ WT A + I+ +G F+
Sbjct: 9 VLAAAVSVIAMPAFAAEEVKIGLPSWTGAQAIGHLLGEIVTSRIGGTVEYVPGNNATIFQ 68
Query: 70 SLK--NKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG------- 120
++ ID+ W P+ + F Y++ ++ N V+
Sbjct: 69 AMDQGKGDIDVHPDVWLPNQQSFTKKYVDGTGSVTLSSNPYEGNQGFCVSKDFGMANNIT 128
Query: 121 --FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
LG + +++ PG + L I A E
Sbjct: 129 DIADLGRPDVAALMDSDGNGKGEMWIGAPGWASANVNEVKTRDYGL-LDFIEPIRAEESV 187
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG-------------EEISGFGEAS 225
++I+ F ++PH + ++ L ++ + ++S
Sbjct: 188 KTARIKDSIAKGEGYAFYCYKPHAVWFMFDVEMLSEPTFDEAKYTMVQPSDDADWYEKSS 247
Query: 226 VYT---------VVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
V T + + P I+ N + + + I N D +
Sbjct: 248 VATKDALKNVQIAWSNSLEGRSPAITEFFNNFAVTADDVSGLAFEISANGMDPADAAKAW 307
Query: 277 LRTHPDLLKNWL 288
+ + D + L
Sbjct: 308 IEANSDRVDAML 319
>gi|327473988|gb|EGF19401.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Streptococcus sanguinis
SK408]
Length = 506
Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats.
Identities = 30/303 (9%), Positives = 90/303 (29%), Gaps = 39/303 (12%)
Query: 3 KILAVCLFLTTFSISYARDAD-----SCTPVRFADTGWTDIAATTAMTSVILEEILG--Y 55
+ + + + + + A + M +++EE
Sbjct: 207 RTVFTAFAVLILGLGASYSPSLIPKQEKDHLVIAGKLGPEPEILMNMYKLLIEENTDMTV 266
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------E 97
+++LK IDI+ + + P + +
Sbjct: 267 TVKPNFGKTDFLYQALKKGDIDIYPEFTGTITGTLLQPAPKVSNDAEEVFEAARDGIKKQ 326
Query: 98 GSIKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
++ L+ Y +AV+ +K+ D+ + +L A N+
Sbjct: 327 DNLVLLNNMAYQNTYAIAVSKSVAKEYNLKTISDLKAVQDKLKAGFTL--EFNDREDGNK 384
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ + +L + + + ++ + ++ + ++ L
Sbjct: 385 GLQSVYGLNLNVSTMEP-------ALRYQAIQSGDIQITDAYSTDAELARYDLQVLED-- 435
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
F +++++ L+K P + +L + K + + ++M + + + + R
Sbjct: 436 NKHLFPPYQGAPLLKAELLEKHPELEGILNKLAGKITESQMSQMNYQVGIEGKKAEDIAR 495
Query: 275 TML 277
L
Sbjct: 496 DYL 498
>gi|327469521|gb|EGF14990.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Streptococcus sanguinis
SK330]
Length = 506
Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats.
Identities = 31/303 (10%), Positives = 85/303 (28%), Gaps = 39/303 (12%)
Query: 3 KILAVCLFLTTFSISYARDAD-----SCTPVRFADTGWTDIAATTAMTSVILEEILG--Y 55
+ + + + + + A + M +++E
Sbjct: 207 RTVFTAFAVLILGLGASYTPSLLPKQEKDHLVIAGKLGPEPEILMNMYKLLIEGNTDMTV 266
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------E 97
+++LK IDI+ + + P + +
Sbjct: 267 TVKPNFGKTDFLYQALKKGDIDIYPEFTGTITGTLLQPAPKVSNDAEEVFEAARDGIRKQ 326
Query: 98 GSIKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
++ L+ Y +AV +K+ D+ + +L A N+
Sbjct: 327 DNLVLLNHMAYQNTYAIAVPKTVAKEYNLKTISDLKAVQDKLKAGFTL--EFNDREDGNK 384
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ + +L + + ++ + + P + L
Sbjct: 385 GLQSVYGLNLNVSTMEP-------ALRYDAIKSGDIQITEVYSTDPEIERYQLQILED-- 435
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F ++++ L+K P + +L + K + + ++M + + + V R
Sbjct: 436 DKHLFPPYQGAPLLKAKLLEKHPELEGILNKLAGKITESQMSQMNYQVGIEGKKAEAVAR 495
Query: 275 TML 277
L
Sbjct: 496 DYL 498
>gi|237706699|ref|ZP_04537180.1| high-affinity glycine betaine [Escherichia sp. 3_2_53FAA]
gi|91073614|gb|ABE08495.1| high-affinity glycine betaine - proline transport system protein
[Escherichia coli UTI89]
gi|226899739|gb|EEH85998.1| high-affinity glycine betaine [Escherichia sp. 3_2_53FAA]
Length = 344
Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats.
Identities = 41/320 (12%), Positives = 93/320 (29%), Gaps = 36/320 (11%)
Query: 4 ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKL 61
+ A + ++A D V + T+ T + S LE LGY
Sbjct: 20 LFATAFATLISTQTFAADLPGKGITVNPVQSTITEETFQTLLVSRALE-KLGYTVNKPSE 78
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V + SL + W P + + + GA ++
Sbjct: 79 VDYNVGYTSLASGDATFTAVNWTPLHDNMYEAAGGDKKFYREGVFVNGAAQGYLIDKKTA 138
Query: 122 ALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ + + A + G PG I + +
Sbjct: 139 DQYKITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGWGCEGAINHQLAAYGLT-NTVTHN 197
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEEI---------- 218
+ + A + + P + +W P+ ++++ ++ +L
Sbjct: 198 QGNYAAMMADTISRYKEGKPVFYYTWTPYWVSNELKPGKDVVWLQVPFSALPGDKNADTK 257
Query: 219 ------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
GF ++++ V + +K P ++L ++ VA N ++ + K +
Sbjct: 258 LPNGANYGFPVSTMHIVANKAWAEKNPAAAKLFAIMQLPVADINAQNAIMHDGKASEDDI 317
Query: 273 ---GRTMLRTHPDLLKNWLI 289
++ H W+
Sbjct: 318 QGHVDGWIKAHQQQFDGWVN 337
>gi|326403327|ref|YP_004283408.1| putative ABC transporter substrate-binding protein [Acidiphilium
multivorum AIU301]
gi|325050188|dbj|BAJ80526.1| putative ABC transporter substrate-binding protein [Acidiphilium
multivorum AIU301]
Length = 309
Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats.
Identities = 70/250 (28%), Positives = 113/250 (45%), Gaps = 8/250 (3%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF----- 79
C +R GW D A+ I+ GY+ I+ + + L + +D++
Sbjct: 31 CRTIRLGHGGWLDNQVQNAVFGAIV-APFGYQVRIEPARLKTIYHRLADGRLDVYLQDWR 89
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
W S+ + I + +L GA++ LAV + G+K + DI K+ +L
Sbjct: 90 PDNWMSSVTAIRDSDVARKRIAVAGTDLSGARHTLAVPAYLYRAGLKDFADIHKFAGQLD 149
Query: 140 AKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWE 199
IYGIEP N G++++L MI +N L GF L++A + R++ P +FL W+
Sbjct: 150 HTIYGIEPDNVGDRQLLSMIRHNTDGLGGFHLVQAGAGGMLRALAAKIRHHEPILFLGWQ 209
Query: 200 PHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENE 257
P +N + I YL GG G A + R+ Y +CP I LL + V E+
Sbjct: 210 PDAMNVEYRIRYLGGGAAAFGHDQGAARSLILTRAGYAAQCPAIGGLLHRFRLPVRAESR 269
Query: 258 MMKLILNNKQ 267
MM I ++
Sbjct: 270 MMYDIQVKRE 279
>gi|295131546|ref|YP_003582209.1| ABC transporter, substrate-binding protein, QAT family
[Propionibacterium acnes SK137]
gi|291377298|gb|ADE01153.1| ABC transporter, substrate-binding protein, QAT family
[Propionibacterium acnes SK137]
Length = 346
Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats.
Identities = 55/276 (19%), Positives = 98/276 (35%), Gaps = 11/276 (3%)
Query: 19 ARDADSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGID 77
A D+ T + W + AT + +L++ GY IK V +++ ID
Sbjct: 73 AMKPDTNTSLTIGAFNGWDESWATAGLIKQVLKKD-GYTVTIKGFDAGVGYQATAGGDID 131
Query: 78 IFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKE 137
I W P + ++ + AK +AVN A I + K
Sbjct: 132 IITDSWLPVTQAGYIRKYG-PKLENLGCWYDNAKLTIAVNKNSPAHSIAD---LKKTGSA 187
Query: 138 LGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLS 197
G IY IEPG E + I + L L +S A +Q+++ +
Sbjct: 188 YGNVIYSIEPGAEMTKTIAHQTL-PMYGLSNITLKTSSTPAMLAQLQKATKAGNNVAVTL 246
Query: 198 WEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENE 257
W PH + L + E +Y+ R + P ++L++N+ A +
Sbjct: 247 WRPHWAYDAYPVRDLDDPKNAISNAE-LIYSFGRPGFEKDHPKAAQLIRNLAIDDAHLSS 305
Query: 258 MMKLILNN---KQDRQFVGRTMLRTHPDLLKNWLIG 290
+ L+++ + + D + +WL G
Sbjct: 306 LEHLMVDTTKRGGQEDTAISRWMADNSDWVHDWLAG 341
>gi|50843463|ref|YP_056690.1| periplasmic binding protein of proline/glycine betaine transport
system [Propionibacterium acnes KPA171202]
gi|50841065|gb|AAT83732.1| periplasmic binding protein of proline/glycine betaine transport
system [Propionibacterium acnes KPA171202]
Length = 347
Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats.
Identities = 54/276 (19%), Positives = 97/276 (35%), Gaps = 11/276 (3%)
Query: 19 ARDADSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGID 77
A D+ T + W + AT + +L++ GY IK V +++ ID
Sbjct: 74 AMKPDTNTSLTIGAFNGWDESWATAGLIKQVLKKD-GYTVTIKGFDAGVGYQATAGGDID 132
Query: 78 IFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKE 137
I W P + ++ + AK + VN A I + K
Sbjct: 133 IITDSWLPVTQAGYIRKYG-PKLENLGCWYDNAKLTIVVNKNSPAHSIAD---LKKTGSA 188
Query: 138 LGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLS 197
G IY IEPG E + I + L L +S A +Q+++ +
Sbjct: 189 YGNVIYSIEPGAEMTKTIAHQTL-PMYGLSNITLKTSSTPAMLAQLQKATKAGNNVAVTL 247
Query: 198 WEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENE 257
W PH + L + E +Y+ R + P ++L++N+ A +
Sbjct: 248 WRPHWAYDAYPVRDLDDPKNAISNAE-LIYSFGRPGFEKDHPKAAQLIRNLAIDDAHLSS 306
Query: 258 MMKLILNN---KQDRQFVGRTMLRTHPDLLKNWLIG 290
+ L+++ + + D + +WL G
Sbjct: 307 LEHLMVDTTKRGGQEDTAISRWMADNSDWVHDWLAG 342
>gi|259907585|ref|YP_002647941.1| glycine betaine transporter periplasmic subunit [Erwinia pyrifoliae
Ep1/96]
gi|224963207|emb|CAX54691.1| Glycine betaine-binding periplasmic protein [Erwinia pyrifoliae
Ep1/96]
gi|283477427|emb|CAY73343.1| Glycine betaine/L-proline ABC transport system,periplasmic
component [Erwinia pyrifoliae DSM 12163]
Length = 331
Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats.
Identities = 44/321 (13%), Positives = 91/321 (28%), Gaps = 44/321 (13%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRSLKNK 74
+S A V+ A + T+ T + S LE LGY + + V + S+
Sbjct: 19 VSAADLPGRGITVKPAQSTITEETFQTLLVSRALE-KLGYTVDDPSEVDYNVAYTSIAAG 77
Query: 75 GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD---- 130
W P + + +QGA ++ + +
Sbjct: 78 DTTFMATNWRPLHDDMYQAAGGDAKFYRHGAYVQGAAQGYLIDKKTADKYHITNIEQLKD 137
Query: 131 -----IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
+ + A + G PG + I I S + + A +
Sbjct: 138 PKLAKLFDTNDDGKADLTGCTPGWGCDDVITHQIKAYGLS-NTVTHNQGNYSAMIADTIT 196
Query: 186 DQRNNIPAVFLSWEPHP----INSDLNIHYLPGGEE-----------------ISGFGEA 224
+ P ++ +W P+ + ++ +L GF
Sbjct: 197 RFKGGKPVLYFTWTPYWVSDVLVPGRDVVWLQVPFSSMPGAQKNVDTKLANGANYGFPVN 256
Query: 225 SVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV---GRTMLRTHP 281
S++ V ++ K P ++L +K +A N + + + ++ H
Sbjct: 257 SMHIVANKEWAQKNPAAAKLFAEMKLPLADINAQNSRMHQGQSSDADINAHVNGWIKAHQ 316
Query: 282 DLLKNWLIGVTTFDGQDPSRQ 302
W+ +D
Sbjct: 317 AQFDGWV--------KDALAA 329
>gi|323357871|ref|YP_004224267.1| glycine/betaine ABC transporter systems periplasmic protein
[Microbacterium testaceum StLB037]
gi|323274242|dbj|BAJ74387.1| ABC-type proline/glycine betaine transport systems, periplasmic
components [Microbacterium testaceum StLB037]
Length = 299
Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats.
Identities = 52/294 (17%), Positives = 99/294 (33%), Gaps = 20/294 (6%)
Query: 5 LAVCLFLTTFSISYARDADSCT-------PVRFAD-TGWTDIAATTAMTSVILEEILGYK 56
L L + A+ + + WTD +T + L LGY
Sbjct: 12 LGAVSALALAGCASGNQAEGGSGGDDSKGTITLGFLPSWTDGLSTAYLLEDQL-GKLGYT 70
Query: 57 TNI-KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
+ L + L +DI+ W + +I+ + AK +A
Sbjct: 71 VEMQTLTEAGPLYAGLAQGDVDIYPSAWPELTHADYMDKYGD-NIEDLGAYYDNAKLTIA 129
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
V I S + KIYGIEPG ++ + + + L G L+ +S
Sbjct: 130 VPSYV---DITSIDQLKDNAARFDGKIYGIEPGAGLTKQTQE-VAMPGYGLDGLELVTSS 185
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYL 235
A +++ W P N ++ L + + G EA ++ + S +
Sbjct: 186 TAAMLTELDNAIAAQKDIAVTLWRPFWANDAYDVKDLEDPQGLMGKPEA-LHFLGTSGFA 244
Query: 236 DKCPNISRLLKNIKFSVALENEMMKLILN---NKQDRQFVGRTMLRTHPDLLKN 286
+K P+ + L+ I+ + L++N ++ + + L +P
Sbjct: 245 EKYPDAAELIAGIQLDDEQYGSLEDLVVNEYGEGKEPE-AVQAWLEQNPSAFST 297
>gi|114705346|ref|ZP_01438254.1| glycine betaine/L-proline binding protein (ProX) [Fulvimarina
pelagi HTCC2506]
gi|114540131|gb|EAU43251.1| glycine betaine/L-proline binding protein (ProX) [Fulvimarina
pelagi HTCC2506]
Length = 358
Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats.
Identities = 46/342 (13%), Positives = 102/342 (29%), Gaps = 46/342 (13%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKLLA 63
+A L + A T V A W +T + +L+E LGY+ L
Sbjct: 18 MAFVGTLPAAAQDGASMPGEGTTVTMARPTWDTGWFSTEIYRQLLQE-LGYEVGQPTTLD 76
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
P ++++ + ++ W+P + + + + L L
Sbjct: 77 APAFYQAVSQGDVTGWVEGWFPLHNTYESTFSNGAEQIGYVARGGALQGYLVDKKSADEL 136
Query: 124 GIKSYQDIAK--------YKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
GI D K + A + PG + I ++ + + I+A+
Sbjct: 137 GITQITDFTKDEVKQAFDRNGDGKADLVACPPGWGCEETITFQLDAFELNDH-VNAIQAN 195
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGG---------------- 215
A+ + + P F +W P+ ++ ++ ++
Sbjct: 196 YSAAMADAIAAYQQGNPIFFYTWTPNWTVNELSPGEDVVWIQTPEVRLPEEQMNLADAAT 255
Query: 216 ----------EEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNN 265
G+ + VV S++L+ P + +N + + N
Sbjct: 256 VEGVEGCVADPCEMGWPANDIRPVVNSEFLEANPAARVIFENASIPLKDIFAQNAEMNNG 315
Query: 266 KQDRQFV---GRTMLRTHPDLLKNWLIGVTTF--DGQDPSRQ 302
+ + T + + + + WL + G +
Sbjct: 316 ADSEEDIVQQASTWIENNQETVDQWLSDARSAAEGGSEGEAA 357
>gi|116511668|ref|YP_808884.1| choline ABC transporter permease and substrate binding protein
[Lactococcus lactis subsp. cremoris SK11]
gi|116107322|gb|ABJ72462.1| ABC-type proline/glycine betaine transport system, permease and
substrate binding protein [Lactococcus lactis subsp.
cremoris SK11]
Length = 500
Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats.
Identities = 36/302 (11%), Positives = 75/302 (24%), Gaps = 34/302 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCT--PVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
+ IL + + A + M +++E+ + N
Sbjct: 206 IRTILISFFIGLLVLGGSYYRPQTSDHPQITIAGKLGAEPDVLINMYKLLIEKDSNIRVN 265
Query: 59 IK--LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA------------ 104
+K + +LK IDI+ Y F+ + +V
Sbjct: 266 LKSNFGDTTFLYNALKAGKIDIYPEYTGTITSTFLKDPVNSTDPAVVWQKAEEGIKKLNQ 325
Query: 105 -----ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI 159
Y LAV + L A + + +
Sbjct: 326 FTYLSPMKFQDTYALAVKSDFAKEHQLTKISDLPNFSGLTAGF--DVEFANRSDGNIGLK 383
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
L + + I + V + N+ L + +
Sbjct: 384 KLYGLDLNVKTMQSS-------LIYNALNSGAVNVAEVYSTDSQIKQYNLTVLKDDKNLF 436
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+++ L K P + ++L + K + EM + ++D V L
Sbjct: 437 --PPYQAAPLMKESLLKKYPELKKILNKLSGKITDQEMIEMNYDVNVKQEDASKVAERYL 494
Query: 278 RT 279
+
Sbjct: 495 KA 496
>gi|315303149|ref|ZP_07873820.1| BilEB [Listeria ivanovii FSL F6-596]
gi|313628480|gb|EFR96942.1| BilEB [Listeria ivanovii FSL F6-596]
Length = 504
Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats.
Identities = 36/299 (12%), Positives = 90/299 (30%), Gaps = 34/299 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
++ + LT + + A + M +++E+ K N+K
Sbjct: 212 TISAGILLTAAIVVVPYLTSDKKEITIAGKLGAEPEILINMYKIVIEDETDLKVNVKPNM 271
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE-----------------EGSIKLVA 104
F +LK+ IDI+ + LE F+ + + + +
Sbjct: 272 GKTSFVFNALKSGDIDIYPEFTGTVLETFLKENAQTHNPEQVYEQARDGLAKDFDMAYLK 331
Query: 105 ENLQGAKYMLAV-NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK 163
Y LAV + ++ D+ ++ D + K
Sbjct: 332 PMKYNNTYALAVSPEFAKENNLEKISDLGPVTDQVK---------AGFTLEFKDRSDGYK 382
Query: 164 FSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
+ + L + ++ ++ + ++ + + L +++
Sbjct: 383 GIQETYGLTFPNLKTMEPKLRYNAIKSGDINLLDAYSTDSELAQYKLKVLEDDQQLF--P 440
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++ + LDK P + + L + K + +M + N + V + L+
Sbjct: 441 PYQGAPLMLKETLDKHPELRKPLNKLAGKITDDEMRKMNYEVNVNGKSAYTVAKNYLQE 499
>gi|300812812|ref|ZP_07093207.1| ABC transporter, substrate-binding protein, QAT family
[Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
gi|300496148|gb|EFK31275.1| ABC transporter, substrate-binding protein, QAT family
[Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
Length = 506
Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats.
Identities = 47/307 (15%), Positives = 90/307 (29%), Gaps = 39/307 (12%)
Query: 2 YKILAVCLFLTTFSISYARDAD----SCTPVRFADTGWTDIAATTAMTSVILE-EILGYK 56
+++ A L + + ++ V A ++ M ++E + K
Sbjct: 208 FRVTAAVLAIFAIGLGVSQAPKHFTPKQEEVVIAGKLGSEPDILINMYKDLIERDNPHVK 267
Query: 57 TNIK--LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL------------------E 96
+K F +LK IDI+ + L+ + E
Sbjct: 268 VTLKNNFGGTSFLFNALKTGKIDIYPEFTGTVLQGLAKKKVATPHDPAKTYQLAKKLMAE 327
Query: 97 EGSIKLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRI 155
E + + Y LAV IKS D+AK L A
Sbjct: 328 EDQLTYLPPMNYQNGYDLAVTKAFAKKHNIKSLSDLAKVDASLTAAF--DPDFANQQDGY 385
Query: 156 LDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG 215
L + + K + + + + AV + P ++ L
Sbjct: 386 LGLKKEYGLNFKVKTMEP-------ALRYKAIASGKVAVVDGYTTDPQIKQYDLVALKD- 437
Query: 216 EEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVG 273
+ S F ++++ + K P + + L + K + A EM + + V
Sbjct: 438 -DKSFFPPYQGAPLLKNSFAQKHPGVVKSLNKLAGKITEAEMQEMNYKVTVKHESASKVA 496
Query: 274 RTMLRTH 280
L+ H
Sbjct: 497 HQYLKQH 503
>gi|256617563|ref|ZP_05474409.1| ABC transporter membrane-spanning permease [Enterococcus faecalis
ATCC 4200]
gi|256597090|gb|EEU16266.1| ABC transporter membrane-spanning permease [Enterococcus faecalis
ATCC 4200]
Length = 505
Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats.
Identities = 38/283 (13%), Positives = 90/283 (31%), Gaps = 34/283 (12%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGID 77
+ + + A + M ++EE + +K + +LK+ ID
Sbjct: 229 QTSSKEKQLTIAGKLGAEPDIIINMYKALIEENSDIQVTLKPNFGKTTFLYNALKSDEID 288
Query: 78 IFMGYWYPSLEKFIAPYLE------------------EGSIKLVAENLQGAKYMLAVNDV 119
++ + +E F+ + + ++ L+ Y +AV
Sbjct: 289 LYPEFTGTVIETFLKNPPQLDNQPQVVYEAARAGLKKQENLTLLKPMRYENTYAVAVKRS 348
Query: 120 GFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+K+ D+ K +L +D + K + + L +
Sbjct: 349 FAKAHQLKTISDLQKISNQLK---------AGFTLEFIDRQDGYKGLQEKYHLNLNVQSM 399
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+ + N V ++ ++ L + + F ++++ L+K
Sbjct: 400 EPALRYQAINNGEVNVIDAYSTDSELRQYDLVTLED--DQALFPPYQGAPLIKTATLEKY 457
Query: 239 PNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
P ++ +L + K S +EM + QD V + L+
Sbjct: 458 PELAEILNELAGKISEEEMSEMNYQVNVEGQDPSIVAKDYLKE 500
>gi|310764906|gb|ADP09856.1| glycine betaine transporter periplasmic subunit [Erwinia sp.
Ejp617]
Length = 331
Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats.
Identities = 44/321 (13%), Positives = 91/321 (28%), Gaps = 44/321 (13%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRSLKNK 74
+S A V+ A + T+ T + S LE LGY + + V + S+
Sbjct: 19 VSAADLPGKGITVKPAQSTITEETFQTLLVSRALE-KLGYTVDDPSEVDYNVAYTSIAAG 77
Query: 75 GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD---- 130
W P + + +QGA ++ + +
Sbjct: 78 DTTFMATNWRPLHDDMYQAAGGDAKFYRHGAYVQGAAQGYLIDKKTADKYHITNIEQLKD 137
Query: 131 -----IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
+ + A + G PG + I I S + + A +
Sbjct: 138 PKLAKLFDTNDDGKADLTGCTPGWGCDDVITHQIKAYGLSKT-VTHNQGNYSAMIADTIT 196
Query: 186 DQRNNIPAVFLSWEPHP----INSDLNIHYLPGGEE-----------------ISGFGEA 224
+ P ++ +W P+ + ++ +L GF
Sbjct: 197 RFKGGKPVLYFTWTPYWVSDVLVPGSDVVWLQVPFSSMPGAQKNVDTKLANGANYGFPVN 256
Query: 225 SVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV---GRTMLRTHP 281
S++ V ++ K P ++L +K +A N + + + ++ H
Sbjct: 257 SMHIVANKEWAQKNPAAAKLFAEMKLPLADINAQNSRMHQGQSSDADINAHVNGWIKAHQ 316
Query: 282 DLLKNWLIGVTTFDGQDPSRQ 302
W+ +D
Sbjct: 317 AQFDGWV--------KDALAA 329
>gi|154707306|ref|YP_001425237.1| glycine betaine transport system permease protein [Coxiella
burnetii Dugway 5J108-111]
gi|154356592|gb|ABS78054.1| glycine betaine transport system permease protein [Coxiella
burnetii Dugway 5J108-111]
Length = 526
Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats.
Identities = 32/306 (10%), Positives = 75/306 (24%), Gaps = 37/306 (12%)
Query: 2 YKILAVCLFLTTFSIS--------YARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL 53
KI +F+ F+ + A +++ + + ++E
Sbjct: 217 KKIKLTFIFILLFASLYLMIDTIIPTAFKSKKNTIVIATKNFSEQYILGDIMADMIETRT 276
Query: 54 GYKT--NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFI----------------APYL 95
L + + +L N ID++ Y + + Y
Sbjct: 277 HLTVRKKFNLGSTAIIQNALLNGEIDLYPEYTGTAYLTVLHHANLVSAPQIFKIVKKEYQ 336
Query: 96 EEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRI 155
++ ++ + LAV I + +
Sbjct: 337 QQFNLIWLNPFGFNNSQTLAVRADFAKQHRLKTLSDLAVISP-RLTIAAPAEFLKRPDAL 395
Query: 156 LDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG 215
+ F K ++ I + RN V + ++ L
Sbjct: 396 PGLKRVYGFRFKRVIQMQPD------LIYQAIRNKDVNVIEVFTTDGRIPAYHLVPLED- 448
Query: 216 EEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVG 273
+ + V+R +L P + + L + + L+ + + V
Sbjct: 449 -DKHLYPPYYAAPVIREAFLKAHPEVEKALAPLAGLIDEKTMQHLNALVDIKHESPEKVV 507
Query: 274 RTMLRT 279
L
Sbjct: 508 HDFLVE 513
>gi|238784822|ref|ZP_04628823.1| Osmoprotectant transport protein OusBX [Yersinia bercovieri ATCC
43970]
gi|238714238|gb|EEQ06249.1| Osmoprotectant transport protein OusBX [Yersinia bercovieri ATCC
43970]
Length = 331
Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats.
Identities = 41/324 (12%), Positives = 93/324 (28%), Gaps = 37/324 (11%)
Query: 1 MYKI---LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M K + L + +S A V+ + ++ T++ + LE LGY
Sbjct: 1 MRKTRIWILALTTLISTQLSAAELPGKGVSVQPLQSTISEETFQTSLVNKALE-KLGYDV 59
Query: 58 N-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
K + V + S+ W P A + ++G +
Sbjct: 60 QPTKEVDYNVAYASIAAGDATYLAVNWEPLHNDQYAAAGGDAKFYRQGNYIEGLAQGYLI 119
Query: 117 NDVGFALGIKSYQD---------IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
+ + + + + A + G PG I I S
Sbjct: 120 DKKTADKYHITNIEQLKDPKIAKLFDANNDGKADLTGCNPGWGCEAPINHQIKAYGLSDT 179
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP----INSDLNIHYLPGGEE------ 217
+ + A + + P ++ +W P+ + ++ +L
Sbjct: 180 -VTHNQGNYAAMIADTITRYKEGKPILYYTWTPYWVSDVLVPGRDVVWLQVPFSSLPDKT 238
Query: 218 ---------ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI---LNN 265
G+ + ++ V + + P ++L +K S+ N + ++
Sbjct: 239 IDTQLSNGANYGYPPSVMHIVANKKWAEANPAAAKLFSVMKLSINDVNAQNMRMHAGESS 298
Query: 266 KQDRQFVGRTMLRTHPDLLKNWLI 289
D + ++ H W+
Sbjct: 299 DADIERHVNGWIQAHQATFDGWVN 322
>gi|148259703|ref|YP_001233830.1| substrate-binding region of ABC-type glycine betaine transport
system [Acidiphilium cryptum JF-5]
gi|146401384|gb|ABQ29911.1| Substrate-binding region of ABC-type glycine betaine transport
system [Acidiphilium cryptum JF-5]
Length = 309
Score = 133 bits (333), Expect = 5e-29, Method: Composition-based stats.
Identities = 69/250 (27%), Positives = 112/250 (44%), Gaps = 8/250 (3%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF----- 79
C +R GW D A+ ++ GY+ I+ + + L + +D++
Sbjct: 31 CRTIRLGHGGWLDNQVQNAVFGAVV-APFGYQVRIEPARLKTIYHRLADGRLDVYLQDWR 89
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
W S+ + I + +L GA++ LAV + G+K + DI K+ +L
Sbjct: 90 PDNWMSSVTAIRDSDVARKRIAVAGTDLSGARHTLAVPAYLYRAGLKDFADIHKFAGQLD 149
Query: 140 AKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWE 199
IYGIEP N G++++L MI N L GF L++A + R++ P +FL W+
Sbjct: 150 HTIYGIEPDNVGDRQLLSMIRRNTDGLGGFHLVQAGAGGMLRALAAKIRHHEPILFLGWQ 209
Query: 200 PHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENE 257
P +N + I YL GG G A + R+ Y +CP I LL + V E+
Sbjct: 210 PDAMNVEYRIRYLGGGGAAFGHDQGAARSLILTRAGYAAQCPAIGGLLHRFRLPVRAESR 269
Query: 258 MMKLILNNKQ 267
MM I ++
Sbjct: 270 MMYDIQVKRE 279
>gi|116332963|ref|YP_794490.1| periplasmic glycine betaine/choline-binding (lipo)protein of an
ABC-type transport system (osmoprotectant binding
protein) [Lactobacillus brevis ATCC 367]
gi|116098310|gb|ABJ63459.1| Periplasmic glycine betaine/choline-binding (lipo)protein of an
ABC-type transport system (osmoprotectant binding
protein) [Lactobacillus brevis ATCC 367]
Length = 310
Score = 133 bits (333), Expect = 5e-29, Method: Composition-based stats.
Identities = 49/308 (15%), Positives = 89/308 (28%), Gaps = 34/308 (11%)
Query: 1 MYK--------ILAVCLFLTTFSISYARDADSC-TPVRFADTGWTDIAATTAMTSVILEE 51
M K +LA + L S A S +R A T+ M + ++E
Sbjct: 1 MRKHLRKWLAGLLAAVILLPLGGCSLPGLAGSGNDTIRIASQNTTEQQIMAYMIAGMIEH 60
Query: 52 ILGYKTNIKL--LAVPVTFRSLKNKGIDIFMGYWY---------------PSLEKFIAPY 94
KT+I + V+F +LKN DI +Y P+ K
Sbjct: 61 DTNLKTSIINNLGSGNVSFNALKNGNADISAIRFYGTDLTTILNEKFERDPAKVKATVTK 120
Query: 95 LEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQR 154
+ + G A + ++ KK GI+ + Q
Sbjct: 121 GFQDRYHMTYFKTYGFADTYAWMVTQKYAKQHHLKTVSDMKKLAPKMKVGIDQIWQNRQG 180
Query: 155 ILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPG 214
+ + + N L + + ++ L
Sbjct: 181 DGYPSFQKMYGYSFGTVYP----MQTGLLYDALSANKMDAILGYSTDGRVASYHLKLLKD 236
Query: 215 GEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFV 272
+ F V + L K P + +L+ + K S+ E+ + + ++ Q V
Sbjct: 237 --DKHFFPPYDASPVATNAILKKHPELKPVLEKLEGKISLKTMQELNYKVDDELEEPQTV 294
Query: 273 GRTMLRTH 280
L+ H
Sbjct: 295 AMNYLKQH 302
>gi|289425771|ref|ZP_06427526.1| ABC transporter, substrate-binding protein, QAT family
[Propionibacterium acnes SK187]
gi|289153877|gb|EFD02583.1| ABC transporter, substrate-binding protein, QAT family
[Propionibacterium acnes SK187]
Length = 347
Score = 133 bits (333), Expect = 5e-29, Method: Composition-based stats.
Identities = 55/276 (19%), Positives = 98/276 (35%), Gaps = 11/276 (3%)
Query: 19 ARDADSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGID 77
A D+ T + W + AT + +L++ GY IK V +++ ID
Sbjct: 74 AMKPDTNTSLTIGAFNGWDESWATAGLIKQVLKKD-GYTVTIKGFDAGVGYQATAGGDID 132
Query: 78 IFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKE 137
I W P + ++ + AK +AVN A I + K
Sbjct: 133 IITDSWLPVTQAGYIRKYG-PKLENLGCWYDNAKLTIAVNKNSPAHSIAD---LKKTGSA 188
Query: 138 LGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLS 197
G IY IEPG E + I + L L +S A +Q+++ +
Sbjct: 189 YGNVIYSIEPGAEMTKTIAHQTL-PMYGLSNITLKTSSTPAMLAQLQKATKAGNNVAVTL 247
Query: 198 WEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENE 257
W PH + L + E +Y+ R + P ++L++N+ A +
Sbjct: 248 WRPHWAYDAYPVRDLDDPKNAISNAE-LIYSFGRPGFEKDHPKAAQLIRNLAIDDAHLSS 306
Query: 258 MMKLILNN---KQDRQFVGRTMLRTHPDLLKNWLIG 290
+ L+++ + + D + +WL G
Sbjct: 307 LEHLMVDTTKRGGQEDTAISRWMADNSDWVHDWLAG 342
>gi|327461351|gb|EGF07682.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Streptococcus sanguinis
SK1]
Length = 506
Score = 133 bits (333), Expect = 5e-29, Method: Composition-based stats.
Identities = 32/303 (10%), Positives = 87/303 (28%), Gaps = 39/303 (12%)
Query: 3 KILAVCLFLTTFSISYARDAD-----SCTPVRFADTGWTDIAATTAMTSVILEEILG--Y 55
+ + + + + + A + M +++EE
Sbjct: 207 RTVFTAFAVLILGLGASYTPSLLPKQEKDHLVIAGKLGPEPEILMNMYKLLIEENTDMTV 266
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------E 97
+++LK IDI+ + + P + +
Sbjct: 267 TVKPNFGKTDFLYQALKKGDIDIYPEFTGTITGTLLQPAPKVSTDAEEVFEAARDGIKKQ 326
Query: 98 GSIKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
++ L+ Y +AV +K+ D+ + +L A N+
Sbjct: 327 DNLVLLNHMAYQNTYAIAVPKSVAKEYNLKTISDLKAVQDKLKAGFTL--EFNDREDGNK 384
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ + +L + + ++ + + P + L
Sbjct: 385 GLQSVYGLNLNVSTMEP-------ALRYDAIQSGDIQIMEVYSTDPEIERYQLQILED-- 435
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F +++++ L+K P + +L + K + + ++M + + + V R
Sbjct: 436 DKHLFPPYQGAPLLKAELLEKHPELEGVLNKLAGKITESQMSQMNYQVGIEGKKAEAVAR 495
Query: 275 TML 277
L
Sbjct: 496 DYL 498
>gi|104774103|ref|YP_619083.1| glycine betaine ABC transporter, substrate binding / permease
protein [Lactobacillus delbrueckii subsp. bulgaricus
ATCC 11842]
gi|116514172|ref|YP_813078.1| ABC-type proline/glycine betaine transport system, permease and
substrate binding protein [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
gi|103423184|emb|CAI97982.1| Glycine betaine ABC transporter, substrate binding / permease
protein [Lactobacillus delbrueckii subsp. bulgaricus
ATCC 11842]
gi|116093487|gb|ABJ58640.1| ABC-type proline/glycine betaine transport system, permease and
substrate binding protein [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
gi|325125864|gb|ADY85194.1| glycine betaine/carnitine/choline ABC transporter, substrate
binding and permease protein [Lactobacillus delbrueckii
subsp. bulgaricus 2038]
Length = 506
Score = 133 bits (333), Expect = 5e-29, Method: Composition-based stats.
Identities = 47/307 (15%), Positives = 90/307 (29%), Gaps = 39/307 (12%)
Query: 2 YKILAVCLFLTTFSISYARDADS----CTPVRFADTGWTDIAATTAMTSVILE-EILGYK 56
+++ A L + + ++ + V A ++ M ++E K
Sbjct: 208 FRVTAAVLAIFAIGLGVSQLPKALAPKEEKVVIAGKLGSEPDILINMYKYLIERNNPHVK 267
Query: 57 TNIK--LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL------------------- 95
+K F +LK IDI+ + L+ +
Sbjct: 268 VTLKNNFGGTSFLFNALKTGKIDIYPEFTGTVLQGLAKKKVATLHDPAKTYQLAKKLMAE 327
Query: 96 EEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRI 155
E+ L A N Q + IKS D+AK L A
Sbjct: 328 EDQLTYLPAMNYQNGYDLAVTKAFAKKNNIKSLSDLAKVDASLTAAF--DPDFANQQDGY 385
Query: 156 LDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG 215
L + + K + + + + AV + P ++ L
Sbjct: 386 LGLKKEYGLNFKVKTMEP-------ALRYKAIASGKVAVVDGYTTDPQIKQYDLVALKD- 437
Query: 216 EEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVG 273
+ S F ++++ + K P + + L + K + A EM + + V
Sbjct: 438 -DKSFFPPYQGAPLLKTSFAKKHPGVVKSLNKLAGKITEAEMQEMNYKVTVKHESASKVA 496
Query: 274 RTMLRTH 280
R L+ H
Sbjct: 497 RQYLKQH 503
>gi|110800299|ref|YP_694992.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Clostridium
perfringens ATCC 13124]
gi|110674946|gb|ABG83933.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Clostridium
perfringens ATCC 13124]
Length = 517
Score = 133 bits (333), Expect = 5e-29, Method: Composition-based stats.
Identities = 32/286 (11%), Positives = 88/286 (30%), Gaps = 31/286 (10%)
Query: 13 TFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPVTFRS 70
F + + V +T+ M + ++++ + + L V F +
Sbjct: 234 LFMGISSFISSKKDKVVIGSKNFTEQLILGNMYADLVQDKTDLQVEKKLNLGGTSVAFGA 293
Query: 71 LKNKGIDIFMGYWYPSLEKFIAP----------------YLEEGSIKLVAENLQGAKYML 114
L+ +D+++ Y L + +E + ++ Y +
Sbjct: 294 LEKGDVDMYVDYTGTLLVNVMKENNIDNSVDYYNSIKENMNKEHGLTVMEPLGFNNTYNI 353
Query: 115 AVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
A++ I + D++KY + ++ + N K + ++
Sbjct: 354 AISKELADKYKINTISDLSKYSNDFVLSPT--IEFQNRQDGLVGLKNYYGMDFKNVKSLD 411
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
S N ++ + ++ L ++ S +V +
Sbjct: 412 GSLR------YSALSNGESQAIDAFSTDGLLKKFDLKTLEDDKKFFVN--YSAVPIVNNK 463
Query: 234 YLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
L+K P + +L ++ K + ++ + + + V + L
Sbjct: 464 TLEKYPQLKDVLNSLSGKINEEKMIDLNYEVDVLGKSPEEVAKAFL 509
>gi|66047478|ref|YP_237319.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. syringae B728a]
gi|63258185|gb|AAY39281.1| Substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. syringae B728a]
Length = 297
Score = 133 bits (333), Expect = 5e-29, Method: Composition-based stats.
Identities = 41/304 (13%), Positives = 89/304 (29%), Gaps = 32/304 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M +I A +R +T+ +T+ L Y I
Sbjct: 1 MKRI--CLFLGFALLFPALAQAAEKPLLRVGARVFTEQTMLAELTAQYLRTK-NYDVQIT 57
Query: 61 LL-AVPVTFRSLKNKGIDIFMGYWYPSLEKF---------------IAPYLEEGSIKLVA 104
+ + ++ +D+ Y SL + + + + ++
Sbjct: 58 GGLGSNLARSAQESGQLDLLWEYTGVSLVAYNHIDEKLDSAQTYARVKEVDAKKGLVWLS 117
Query: 105 ENLQGAKYMLAVNDVGFALG-----IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI 159
+ Y LA+ + + K + + G + + ++ M+
Sbjct: 118 PSKFNNTYALALPQKVADKYPQVNTMTDLTKVLKDEAKEGHVVALDTEFANRSDGLIGMV 177
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
+ +L + + RN L + + + L +
Sbjct: 178 KHYDMNLGREN----TRQMDAGLVYTALRNGQVFAGLVYTTDGRLNAFKLKVLED--DKH 231
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
F + + V+R +YLDK P+I+ LLK + ++ + + V L
Sbjct: 232 YFPDYTAAPVIRQEYLDKHPDIATLLKPLADLLDNQTMIDLNARVDVGHESPSVVAADFL 291
Query: 278 RTHP 281
R HP
Sbjct: 292 RQHP 295
>gi|302058922|ref|ZP_07250463.1| glycine betaine transporter periplasmic subunit [Pseudomonas
syringae pv. tomato K40]
Length = 340
Score = 133 bits (333), Expect = 5e-29, Method: Composition-based stats.
Identities = 41/327 (12%), Positives = 90/327 (27%), Gaps = 35/327 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-I 59
+ + + L L+ S A++ + + + L+E LGYK
Sbjct: 13 IRCMTVLALALSPLMASAAQEPGKGVSITPIFPTIAEERFRGEIAMAGLKE-LGYKVEQP 71
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
K P +L D + W F A + ++ V + G ++
Sbjct: 72 KETDYPAMMLALSYGDADFTVHAWEQLHASFYAKAGGDDTMVKVGAIMPGVLQGYMIDKK 131
Query: 120 GFALGIKS---------YQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
+ + + A + G PG + +
Sbjct: 132 TADQYKITSVEDLKKPEIAKLFDSNDDGKADMTGCNPGWGCEVLVEHHMKAYGLEKTVTD 191
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHP----INSDLNIHYLPGGE---------- 216
S A + + P ++ +W P + ++ +L +
Sbjct: 192 -NRGSYFALMADTIARYQQGKPILYFTWVPQWISSVLIEGRDVVWLTVPKTDLPGGKNDV 250
Query: 217 ------EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQ 270
+ GF +V V+ ++ +K P + L ++ + E+ + N +
Sbjct: 251 DTTYKGKNLGFAVDTVRAVLNKEFAEKNPVAVKFLSEMQITTDDESAQNLKMHNGENSAA 310
Query: 271 FV---GRTMLRTHPDLLKNWLIGVTTF 294
+ + H WL
Sbjct: 311 DIKRHAAEWIAAHRAAYDGWLADARAA 337
>gi|125624494|ref|YP_001032977.1| choline ABC transporter permease and substrate binding protein
[Lactococcus lactis subsp. cremoris MG1363]
gi|124493302|emb|CAL98272.1| choline ABC transporter permease and substrate binding protein
[Lactococcus lactis subsp. cremoris MG1363]
gi|300071285|gb|ADJ60685.1| choline ABC transporter permease and substrate binding protein
[Lactococcus lactis subsp. cremoris NZ9000]
Length = 500
Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats.
Identities = 38/293 (12%), Positives = 82/293 (27%), Gaps = 16/293 (5%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCT--PVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
+ IL + + A + M +++E+ + N
Sbjct: 206 IRTILISFFIGLLVLGGSYYRPQTSDHPQITIAGKLGAEPDVLINMYKLLIEKDSNIRVN 265
Query: 59 IK--LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+K + +LK IDI+ Y F+ + +V + + L
Sbjct: 266 LKSNFGDTTFLYNALKAGKIDIYPEYTGTITSTFLKDPVNSTDPAVVWQKAEEGIKKLNQ 325
Query: 117 NDVGFALGIKSYQDIA---KYKKELGAKIYGIEP-----GNEGNQRILDMINNNKFSLKG 168
+ + +A + KE P + + + N K
Sbjct: 326 FTYLSPMKFQDTYALAVKSDFAKEHQLTKISDLPNVSGLTAGFDVEFANRSDGNIGLKKL 385
Query: 169 FRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYT 228
+ L + S I + V + N+ L + +
Sbjct: 386 YGLDLNVKTMQSSLIYNALNSGAVNVAEVYSTDSQIKQYNLTVLKDDKNLF--PPYQAAP 443
Query: 229 VVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+++ L K P + ++L + K + EM + ++D V L+
Sbjct: 444 LMKESLLKKYPELKKILNKLSGKITDQEMIEMNYDVNVKQEDASKVAERYLKA 496
>gi|123441274|ref|YP_001005261.1| glycine betaine transporter periplasmic subunit [Yersinia
enterocolitica subsp. enterocolitica 8081]
gi|122088235|emb|CAL11024.1| glycine betaine-binding periplasmic protein [Yersinia
enterocolitica subsp. enterocolitica 8081]
Length = 334
Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats.
Identities = 43/336 (12%), Positives = 95/336 (28%), Gaps = 39/336 (11%)
Query: 1 MYKI---LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M K + L + +S A V+ + ++ T++ + LE LGY
Sbjct: 1 MRKTGIWVLALTTLISTQLSAAELPGKGITVQPLQSTISEETFQTSLVNKALE-KLGYDV 59
Query: 58 N-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
K + V + S+ W P A + ++G +
Sbjct: 60 QPTKEVDYNVAYSSIAAGDATYLAVNWEPLHNDQYAAAGGDAKFYRQGNFIEGLAQGYLI 119
Query: 117 NDVGFALGIKSYQD---------IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
+ + + + + A + G PG I I S
Sbjct: 120 DKKTADKYHITNIEQLKDPKIAKLFDANNDGKADLTGCNPGWGCEAPINHQIQAYGLSDT 179
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEP----HPINSDLNIHYLPGGEE------ 217
+ + A + + P ++ +W P + ++ +L
Sbjct: 180 -VTHNQGNYAAMIADTITRYKEGKPILYYTWTPYWVSDVLVPGRDVVWLQVPFSSLPDKT 238
Query: 218 ---------ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI---LNN 265
GF + ++ V + + P ++L +K S+ N + ++
Sbjct: 239 IDTQLSNGANYGFPPSVMHIVANKKWAEANPAAAKLFSIMKLSINDVNAQNMRMHAGESS 298
Query: 266 KQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSR 301
D + ++ H W+ T + +
Sbjct: 299 DADIERHVNGWIQAHQSTFDGWVK--TAAEAGNAKA 332
>gi|312865341|ref|ZP_07725569.1| ABC transporter, substrate-binding protein, QAT family
[Streptococcus downei F0415]
gi|311099452|gb|EFQ57668.1| ABC transporter, substrate-binding protein, QAT family
[Streptococcus downei F0415]
Length = 304
Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats.
Identities = 39/303 (12%), Positives = 88/303 (29%), Gaps = 36/303 (11%)
Query: 2 YKILAVCLFLTTFSISYA---------RDADSCTPVRFADTGWTDIAATTAMTSVILEEI 52
KI + +S + S +R +T+ + + ++ LE+
Sbjct: 4 RKIFLSIILALVLLLSAGLYSYGQKMVGPSQSKGTIRVGSKDFTESSVVAEIYALALEDH 63
Query: 53 LGYKTNIKLL-AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP----------------YL 95
GYK K + + SL + ID++ Y L + Y
Sbjct: 64 -GYKVERKTNISSSLIHDSLIHDEIDLYPEYTGTGLLTILKKPVQTDPKKVYQTVKTDYQ 122
Query: 96 EEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRI 155
++ + + L + S + + + + NE +
Sbjct: 123 KKFDLTWLDYAQANDGQGLVIRTSVAKKYGISTISDLQKQAK-NLRFASQGEFNERQDGL 181
Query: 156 LDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG 215
+ + + + R N+ V ++ + + L
Sbjct: 182 AGLEKTYGKFAWKSSQVYDN-----TLKYRVLENDDADVTPAYTTEGQLAQTDKFTLLKD 236
Query: 216 EEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVG 273
+ + ++ VVR+ L P I +L I + ++ + +K+D Q V
Sbjct: 237 NKSF-WPPYNLAPVVRNQILQDYPEIRPILNKISAGLTTKKVTQLNAKVDVDKEDYQKVA 295
Query: 274 RTM 276
+
Sbjct: 296 KDY 298
>gi|71738123|ref|YP_276396.1| glycine betaine/L-proline ABC transporter periplasmic
substrate-binding protein [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71558676|gb|AAZ37887.1| glycine betaine/L-proline ABC transporter, periplasmic
substrate-binding protein [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|320322605|gb|EFW78698.1| glycine betaine/L-proline ABC transporter, periplasmic
substrate-binding protein [Pseudomonas syringae pv.
glycinea str. B076]
gi|320330140|gb|EFW86126.1| glycine betaine/L-proline ABC transporter, periplasmic
substrate-binding protein [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 297
Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats.
Identities = 44/304 (14%), Positives = 91/304 (29%), Gaps = 32/304 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M +I A +R +T+ + +T+ L GY +
Sbjct: 1 MKRI--CLFLGFALLFPAFAQAAEKPLLRVGARVFTEQTILSELTAQYLRTK-GYDVQVT 57
Query: 61 LL-AVPVTFRSLKNKGIDIFMGYWYPSLEKF---------------IAPYLEEGSIKLVA 104
+ + ++ +D+ Y SL + + + + ++
Sbjct: 58 GGLGSSLARSAQESAQLDLIWEYTGVSLVNYNHVDEKLDSEQTYARVKELDAKKGLVWLS 117
Query: 105 ENLQGAKYMLAVNDVGFALG-----IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI 159
+ Y LA+ + + K + + G + + +L M+
Sbjct: 118 PSKFSNTYALALPQKVADKYPQVNTMTDLTKVLKDEAKEGHLVALDTEFANRSDGLLGMV 177
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
+ +L + + RN L + + + L +
Sbjct: 178 KHYDMNLGREN----TRQMDAGLVYTALRNGQVFAGLVYTTDGRLNAFKLKVLED--DKR 231
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
F + + V+R DYLDK P+I+ LLK + ++ I + V L
Sbjct: 232 YFPDYTAAPVIRQDYLDKHPDIAPLLKPLADLLDTQTMIDLNARIDVGHESPSKVAADFL 291
Query: 278 RTHP 281
R HP
Sbjct: 292 RQHP 295
>gi|293402329|ref|ZP_06646466.1| osmoprotectant ABC transporter, permease protein
[Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291304176|gb|EFE45428.1| osmoprotectant ABC transporter, permease protein
[Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 517
Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats.
Identities = 40/297 (13%), Positives = 76/297 (25%), Gaps = 34/297 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
+L+V S + A ++ M ++E+ G I
Sbjct: 220 MLSVLAIFIALSAGLFYTPHKKEVLHLATKPMSEEFIIGEMLKQLIEDRTGISVVITKGV 279
Query: 62 -LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP----------------YLEEGSIKLVA 104
++ D++ Y S + Y + ++ V
Sbjct: 280 GGGTSNIHPAMVKGDFDLYPEYTGTSWSFVLKEKELPDDATLFKELNQQYQKNYHMEWVG 339
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNK 163
Y +AV + + +G E E +
Sbjct: 340 LYGFNNTYGIAVTKKLADTY--HLKTYSDLAAVSHKLSFGGEYDFYEREDGYDALTTAYG 397
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
F + + N +++ S NI L + F
Sbjct: 398 F------HFKKTRDLDIGLKYDALENGETDAIIAFTTDGRLSSPNIVLLQD--DKHFFQT 449
Query: 224 ASVYTVVRSDYLDKCPNISRLL---KNIKFSVALENEMMKLILNNKQDRQFVGRTML 277
T++R D L K P + ++L N+ S M + K++ V R L
Sbjct: 450 YYAGTIIRQDTLKKYPELRQVLMLMNNL-ISEKEMAAMNHEVETQKKNEADVARAFL 505
>gi|315107808|gb|EFT79784.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL030PA1]
Length = 352
Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats.
Identities = 55/276 (19%), Positives = 98/276 (35%), Gaps = 11/276 (3%)
Query: 19 ARDADSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGID 77
A D+ T + W + AT + +L++ GY IK V +++ ID
Sbjct: 79 AMKPDTNTSLTIGAFNGWDESWATAGLIKQVLKKD-GYTVTIKGFDAGVGYQATAGGDID 137
Query: 78 IFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKE 137
I W P + ++ + AK +AVN A I + K
Sbjct: 138 IITDSWLPVTQAGYIRKYG-PKLENLGCWYDNAKLTIAVNKNSPAHSIAD---LKKTGSA 193
Query: 138 LGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLS 197
G IY IEPG E + I + L L +S A +Q+++ +
Sbjct: 194 YGNVIYSIEPGAEMTKTIAHQTL-PMYGLSNITLKTSSTPAMLAQLQKATKAGNNVAVTL 252
Query: 198 WEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENE 257
W PH + L + E +Y+ R + P ++L++N+ A +
Sbjct: 253 WRPHWAYDAYPVRDLDDPKNAISNAE-LIYSFGRPGFEKDHPKAAQLIRNLAIDDAHLSS 311
Query: 258 MMKLILNN---KQDRQFVGRTMLRTHPDLLKNWLIG 290
+ L+++ + + D + +WL G
Sbjct: 312 LEHLMVDTTKRGGQEDTAISRWMADNSDWVHDWLAG 347
>gi|241888804|ref|ZP_04776110.1| periplasmic glycine betaine/choline-binding [Gemella haemolysans
ATCC 10379]
gi|241864480|gb|EER68856.1| periplasmic glycine betaine/choline-binding [Gemella haemolysans
ATCC 10379]
Length = 504
Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats.
Identities = 36/303 (11%), Positives = 85/303 (28%), Gaps = 36/303 (11%)
Query: 3 KILAVCLFLTTFSISYARDA---DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
K + V L +++ + S + A + M +++E+ +
Sbjct: 206 KTILVSLLAAVVALTISFFPIGKMSNDKLIIAGKIGAEPEILINMYKLLIEDETNIDVEV 265
Query: 60 KL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIA-------------------PYLEEG 98
K + +LK K IDI+ + + E+
Sbjct: 266 KPNFGKTSFLYEALKGKSIDIYPEFTGTVTTTLLKTPQTVASNDPDEVYEVAKNKIFEQD 325
Query: 99 SIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
++ + Y LAV + + K + + +E N+ + +
Sbjct: 326 NLVYLKPTKFQDTYALAVTEDFANKNKLNNISDIKLVENSSKVGFSLE-FNDREDGGIGL 384
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
N +L + + + N + + + L +
Sbjct: 385 KNLYHLNLN-------VKTMEIALKYQAISNGDVNIIDVFSTDSKIITNKLKLLNDDRRL 437
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
++R + L K P + ++L + K + EM + + V +
Sbjct: 438 F--PPYQGAPLLREETLKKHPELEKILNKLAGKITEKEMTEMNYKVDIEGKPAYDVAKEY 495
Query: 277 LRT 279
L+
Sbjct: 496 LQK 498
>gi|160902589|ref|YP_001568170.1| substrate-binding region of ABC-type glycine betaine transport
system [Petrotoga mobilis SJ95]
gi|160360233|gb|ABX31847.1| Substrate-binding region of ABC-type glycine betaine transport
system [Petrotoga mobilis SJ95]
Length = 294
Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats.
Identities = 40/300 (13%), Positives = 91/300 (30%), Gaps = 34/300 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK-TNI 59
M K+ + L + + + +T+ + S++LEE G+
Sbjct: 1 MKKLAVLMLVVAFSLTALFGA-----TLTVGAKNFTEQYVLGNLASLLLEEN-GFNVVER 54
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE----------------EGSIKLV 103
L+ V + L ID++ Y + ++ E + +
Sbjct: 55 FGLSSFVARQGLTTGQIDLYPDYTGTAWVTYLDQEEIINDPDELLEKVRELDAENGVVWL 114
Query: 104 AENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGI--EPGNEGNQRILDMIN 160
Y LA+ + ++ D+ Y E + E +
Sbjct: 115 DRINANNTYALAIRQEDYEKYGFETLSDLVAYWNEHPNEFVVGVDYEFYERPDGFFAFAD 174
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISG 220
+ ++ ++ NN + + + P N+H L +
Sbjct: 175 HYGLDIQDSQV----STMQLGLTYEAISNNKIDIAMVFATDPKILRYNLHVLEDDQNF-- 228
Query: 221 FGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLR 278
+ + VR D LD+ P I +L+ + + + + + + + + V R L+
Sbjct: 229 WPYYHISYAVRKDVLDEYPEIEEILRPLTQYLNQDILIRLNYRVDVDGVEPEVVARDYLQ 288
>gi|168216378|ref|ZP_02642003.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Clostridium
perfringens NCTC 8239]
gi|182381449|gb|EDT78928.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Clostridium
perfringens NCTC 8239]
Length = 517
Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats.
Identities = 32/286 (11%), Positives = 88/286 (30%), Gaps = 31/286 (10%)
Query: 13 TFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPVTFRS 70
F + + V +T+ M + ++++ + + L V F +
Sbjct: 234 LFMGISSFISSKKDKVVIGSKNFTEQLILGNMYADLVQDKTDLQVEKKLNLGGTSVAFGA 293
Query: 71 LKNKGIDIFMGYWYPSLEKFIAP----------------YLEEGSIKLVAENLQGAKYML 114
L+ +D+++ Y L + +E + ++ Y +
Sbjct: 294 LEKGDVDMYVDYTGTLLVNVMKENNIDNSVDYYNSIKENMNKEHGLTVMEPLGFNNTYNI 353
Query: 115 AVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
A++ I + D++KY + ++ + N K + ++
Sbjct: 354 AISKELADKYKINTISDLSKYSNDFVLSPT--IEFQNRQDGLVGLKNYYGMDFKNVKSLD 411
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
S N ++ + ++ L ++ S +V +
Sbjct: 412 GSLR------YSALSNGESQAIDAFSTDGLLKKFDLKTLEDDKKFFVN--YSAVPIVNNK 463
Query: 234 YLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
L+K P + +L ++ K + ++ + + + V + L
Sbjct: 464 TLEKYPQLRDVLNSLSGKINEEKMIDLNYEVDVLGKSPEEVAKAFL 509
>gi|282898212|ref|ZP_06306203.1| Substrate-binding region protein of ABC-type glycine betaine
transport system [Raphidiopsis brookii D9]
gi|281196743|gb|EFA71648.1| Substrate-binding region protein of ABC-type glycine betaine
transport system [Raphidiopsis brookii D9]
Length = 513
Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats.
Identities = 37/286 (12%), Positives = 85/286 (29%), Gaps = 15/286 (5%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LA 63
+ L ++ I + + + +T+ + + +E K K
Sbjct: 226 IISLGISGLVIFNWQFTSTTPTITIGSKNFTEQVILGEILAQQIENHTQLKVERKFNLGG 285
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL---EEGSIKLVAENLQGAKYMLAVNDVG 120
V ++K I ++ Y + + + + + + ++ + +G
Sbjct: 286 TFVCHEAVKAGKIAGYVEYTGTAFTAILKEKPITDPQIVYEKTKQVYREKYNLIVMPSLG 345
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPG-----NEGNQRILDMINNNKFSLKGFRLIEAS 175
F KK + I N L+ + K +RL A+
Sbjct: 346 FENNYAIIIRSEDAKKWQVKNLSEIAAYSNQLKAGFNYEFLERADGYSGLSKTYRLRFAN 405
Query: 176 -ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDY 234
+ + + + + ++ + LN+ L ++ V
Sbjct: 406 VKQMELGIMYQALKEKQVDLIVTNSTDGLIQVLNLVILADDKKYF--PPYEAVPVFNQQI 463
Query: 235 LDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
L K P ++ + + K S A M + N + Q V R L+
Sbjct: 464 LQKYPELATAINRLGGKISTAQMQRMNYQVDNQSRPVQDVVREWLK 509
>gi|301058183|ref|ZP_07199233.1| ABC transporter, substrate-binding protein, QAT family [delta
proteobacterium NaphS2]
gi|300447685|gb|EFK11400.1| ABC transporter, substrate-binding protein, QAT family [delta
proteobacterium NaphS2]
Length = 527
Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats.
Identities = 35/303 (11%), Positives = 79/303 (26%), Gaps = 36/303 (11%)
Query: 3 KILAVCLFLTTFSISYA-------RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
++L V L L ++ + V +T+ + + ++EE
Sbjct: 229 RVLPVLLILAGIAVYVSGGDRWNQASVSEVPTVVIGTKNFTEQLILGELMAQLIEEKTSL 288
Query: 56 KTNIKL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP----------------YLEE 97
K + + ++L N ID++ Y L + Y E
Sbjct: 289 KVERRFNLGGTMICHKALLNGEIDLYAEYTGTGLTAILKEPVIRDPEKAMRHVRKAYQER 348
Query: 98 GSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILD 157
I+ + Y + V + K + + E + +
Sbjct: 349 FGIRWLTPFGFNNTYAITVREDRVRKNGWHKISDLKKDQGEIRAGFTAE-FSGRSDGYPG 407
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
+ + + +E S + N V ++ + L +
Sbjct: 408 LSHAYDLRFMEVKDLEPSM------MYNAIANGEVDVICAFATDGRIEAYRLKPLQD--D 459
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
F VVR L+K + + L ++ + + +
Sbjct: 460 KEFFPPYYAAPVVRDKCLEKNVALEKALLSLGGILDDETMQRLNFQVDGKGLSPEEAANA 519
Query: 276 MLR 278
L+
Sbjct: 520 FLK 522
>gi|310779517|ref|YP_003967850.1| Substrate-binding region of ABC-type glycine betaine transport
system [Ilyobacter polytropus DSM 2926]
gi|309748840|gb|ADO83502.1| Substrate-binding region of ABC-type glycine betaine transport
system [Ilyobacter polytropus DSM 2926]
Length = 296
Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats.
Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 31/301 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCT--PVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K++ L + + A ++ +T+ + SV++E YKT+
Sbjct: 1 MSKLVRNILIVAAIVVFSACGKKEAEVETIKIGHKNFTEERILGQIFSVMIENHTDYKTD 60
Query: 59 IKL-LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP----------------YLEEGSIK 101
+K + F ++KN ID++ Y + + E +
Sbjct: 61 VKELGGTKICFEAVKNGDIDLYPEYSGTAYAAILGKSGLTDPDEVYRLAKEGLKAEYDLD 120
Query: 102 LVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGI-EPGNEGNQRILDMIN 160
+ Y LAV + + + +K G + G E IL +
Sbjct: 121 YLNTLNFNNTYTLAVRPETAEKY--NLKTFSDIEKVSGELVIGATMEFLEREDGILGLKK 178
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISG 220
S++ + V ++ + N+ L + +
Sbjct: 179 AFP-SMEFKEQKPLDGGLR----YTAIKELKIDVTDAFSTDGKLLEYNLVILEDDKNVFL 233
Query: 221 FGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
A V ++ + + P++ +L+ + + + A +M + V L+
Sbjct: 234 --PAYVAPILNGKFAEAYPDVVEVLEKLSGQINEAEIQKMNYRADEQGIPTRVVAEEFLK 291
Query: 279 T 279
Sbjct: 292 E 292
>gi|304386427|ref|ZP_07368760.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Pediococcus acidilactici DSM 20284]
gi|304327784|gb|EFL95011.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Pediococcus acidilactici DSM 20284]
Length = 510
Score = 132 bits (332), Expect = 7e-29, Method: Composition-based stats.
Identities = 39/304 (12%), Positives = 72/304 (23%), Gaps = 36/304 (11%)
Query: 2 YKILAVCLFLTTFSISYARDA---DSCTPVRFADTGWTDIAATTAMTSVILEE---ILGY 55
KI L + A ++ M ++EE
Sbjct: 207 KKITISLAILVVAVSGATVAKILTPPTETITIAGKLGSEPDILINMYKDLIEEEAPHTKV 266
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL------------------EE 97
F +LK IDI+ + LE + ++
Sbjct: 267 TLKQNFGETSFLFNALKADKIDIYPEFSGTVLETLVKDAPSQRLSAAQTYSTGRKLLAQQ 326
Query: 98 GSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILD 157
+ + Y L V + ++
Sbjct: 327 YQMDYLKPMRYQNTYALVVKKDFAKQHHLENISDLSRIENQLHG--------GMTLEFIN 378
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
+ K K + L + S +N V ++ L + L +
Sbjct: 379 RKDGWKGIQKAYGLEFPVKSMQASLRYSAIKNGQINVADAYSTDSQIRQLGLQVLKD--D 436
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
F +++ + K P + R L + K + A EM + K+ Q V
Sbjct: 437 QHVFPPYQGAPLMKKSFAKKHPQVVRALNRLAGKITEAEMQEMNYQVNVQKRSAQQVAHD 496
Query: 276 MLRT 279
L
Sbjct: 497 YLVN 500
>gi|261342127|ref|ZP_05969985.1| glycine betaine-binding periplasmic protein [Enterobacter
cancerogenus ATCC 35316]
gi|288315458|gb|EFC54396.1| glycine betaine-binding periplasmic protein [Enterobacter
cancerogenus ATCC 35316]
Length = 331
Score = 132 bits (332), Expect = 7e-29, Method: Composition-based stats.
Identities = 47/326 (14%), Positives = 96/326 (29%), Gaps = 39/326 (11%)
Query: 1 MY-KILAVCLFLTTFSIS--YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M K+L F T S S A V+ + ++ + T + S LE LGY
Sbjct: 1 MRHKVLFATAFATLVSTSTFAADLPGKGITVQPVQSTISEESFQTLIVSRALE-KLGYTV 59
Query: 58 NI-KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
N + V + S+ + W P + A + + GA +
Sbjct: 60 NTPSEVDYNVGYTSIASGDATFTAVNWQPLHDDMYAAAGGDKKFYREGTFVTGAAQGYLI 119
Query: 117 NDVGFALGIKSYQD---------IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
+ + + + + A + G PG I
Sbjct: 120 DKKTAEQYHITNIEQLKDPKIAKLFDTNGDGKADMMGCSPGWGCEAVINHQNKAFDLEKT 179
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEE------ 217
+ + A + + P ++ +W P+ ++ ++ +L
Sbjct: 180 -VDVSHGNYSAMMADTIARFKEGKPVIYYTWTPYWVSDVLKPGKDVVWLQVPFSSLPGEQ 238
Query: 218 -----------ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNK 266
GF +++ V + +K P ++L +K +A N ++ + K
Sbjct: 239 KDIDTKLPNGMNYGFPVNTMHIVANKAWAEKNPAAAKLFSVMKLPLADINAQNAMMHDGK 298
Query: 267 QDRQFV---GRTMLRTHPDLLKNWLI 289
V ++ H W+
Sbjct: 299 SSEADVKGHVDGWIKAHQQQFDGWVK 324
>gi|160901940|ref|YP_001567521.1| substrate-binding region of ABC-type glycine betaine transport
system [Petrotoga mobilis SJ95]
gi|160359584|gb|ABX31198.1| Substrate-binding region of ABC-type glycine betaine transport
system [Petrotoga mobilis SJ95]
Length = 297
Score = 132 bits (332), Expect = 7e-29, Method: Composition-based stats.
Identities = 46/302 (15%), Positives = 94/302 (31%), Gaps = 35/302 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M KIL L + V +T+ ++M S++L + G K
Sbjct: 1 MKKILISVLIILFGMNYIYAA----EKVVVGAKAFTEGYILSSMVSLLL-QGNGIDVEEK 55
Query: 61 LL-AVPVTFRSLKNKGIDIFMGYWYPSLEKFI-----------------APYLEEGSIKL 102
+ ++++ +D ++ Y + + LE+ +I
Sbjct: 56 FGLSSFPLRKAMETGQVDAYVDYTGTAWAAYFRHTENIYDPEELFDLVAKEDLEKHNIVW 115
Query: 103 VAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAK---IYGIEPGNEGNQRILDM 158
+ Y LAV GI+S D+A Y K E + I +
Sbjct: 116 LDMINFNNTYGLAVRSSFARENGIQSLSDLADYINSGKGKDLIFGVNPEYYERSDGIFAV 175
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
++ +L + V + + ++ L +
Sbjct: 176 MDTYNMNLPKNNV----RTMEAGLTYEALARKNIDVAMIYSTDAQILRFDLVILED--DK 229
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTM 276
S F + +VR + +D+ P I +LK + + + + L+ + + V R
Sbjct: 230 SFFPHYNPSVLVRKETIDEYPEIREILKPLTLYLNEDIIIRLNYLVDFEGLEPEIVARKY 289
Query: 277 LR 278
L+
Sbjct: 290 LQ 291
>gi|289675922|ref|ZP_06496812.1| glycine betaine/choline OpuC ABC transporter, periplasmic
substrate-binding protein [Pseudomonas syringae pv.
syringae FF5]
Length = 297
Score = 132 bits (331), Expect = 7e-29, Method: Composition-based stats.
Identities = 41/304 (13%), Positives = 91/304 (29%), Gaps = 32/304 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M +I A +R +T+ +T+ L Y I
Sbjct: 1 MKRI--CLFLGFALLFPALAQAAEKPLLRVGARVFTEQTILAELTAQYLRTK-NYDVQIT 57
Query: 61 LL-AVPVTFRSLKNKGIDIFMGYWYPSLEKF---------------IAPYLEEGSIKLVA 104
+ + ++ +D+ Y SL + + + + ++
Sbjct: 58 GGLGSNLARSAQESGQLDLLWEYTGVSLVSYNHIDEKLDSAQTYARVKEVDAKKGLIWLS 117
Query: 105 ENLQGAKYMLAVNDVGFALG--IKSYQDIAKYKKELGAKIYGIE---PGNEGNQRILDMI 159
+ Y LA+ + + D+AK K+ + + + + ++ M+
Sbjct: 118 PSKFNNTYALALPQKIADKYPQVNTMSDLAKVFKDEAKEGHLVALDTEFANRSDGLVGMV 177
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
+ +L + + +N L + + + L +
Sbjct: 178 KHYDMNLGRENTRQMDSG----LVYTALQNGQVFAGLVYTTDGRLNAFKLKVLQD--DKH 231
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
F + + V+R +YLDK P+I LK + ++ + + V L
Sbjct: 232 YFPDYTAAPVIRQEYLDKHPDIETSLKPLADLLDNQTMIDLNARVDVGHESPSAVAADFL 291
Query: 278 RTHP 281
R HP
Sbjct: 292 RQHP 295
>gi|110803807|ref|YP_697850.1| glycine betaine/carnitine/choline ABC transporter
permease/substrate-binding protein [Clostridium
perfringens SM101]
gi|110684308|gb|ABG87678.1| glycine betaine/carnitine/choline ABC transporter,
permease/substrate-binding protein [Clostridium
perfringens SM101]
Length = 517
Score = 132 bits (331), Expect = 7e-29, Method: Composition-based stats.
Identities = 32/286 (11%), Positives = 87/286 (30%), Gaps = 31/286 (10%)
Query: 13 TFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPVTFRS 70
F + + V +T+ M + +++ + + L V F +
Sbjct: 234 LFMGISSFISSKKDKVVIGSKNFTEQLILGNMYADLVQAKTDLQVEKKLNLGGTSVAFGA 293
Query: 71 LKNKGIDIFMGYWYPSLEKFIAP----------------YLEEGSIKLVAENLQGAKYML 114
L+ +D+++ Y L + +E + ++ Y +
Sbjct: 294 LEKGDVDMYVDYTGTLLVNVMKENNIDNSVDYYNSIKENMNKEHGLTVMEPLGFNNTYNI 353
Query: 115 AVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
A++ I + D++KY + ++ + N K + ++
Sbjct: 354 AISKELADKYKINTISDLSKYSNDFVLSPT--IEFQNRQDGLVGLKNYYGMDFKNVKSLD 411
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
S N ++ + ++ L ++ S +V +
Sbjct: 412 GSLR------YSALSNGESQAIDAFSTDGLLKKFDLKTLEDDKKFFVN--YSAVPIVNNK 463
Query: 234 YLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
L+K P + +L ++ K + ++ + + + V + L
Sbjct: 464 TLEKYPQLKDVLNSLSGKINEEKMIDLNYEVDVLGKSPEEVAKAFL 509
>gi|28870233|ref|NP_792852.1| glycine betaine ABC transporter periplasmic glycine betaine-binding
protein [Pseudomonas syringae pv. tomato str. DC3000]
gi|28853479|gb|AAO56547.1| glycine betaine ABC transporter, periplasmic glycine
betaine-binding protein [Pseudomonas syringae pv. tomato
str. DC3000]
Length = 325
Score = 132 bits (331), Expect = 7e-29, Method: Composition-based stats.
Identities = 41/324 (12%), Positives = 89/324 (27%), Gaps = 35/324 (10%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLL 62
+ + L L+ S A++ + + + L+E LGYK K
Sbjct: 1 MTVLALALSPLMASAAQEPGKGVSITPIFPSIAEERFRGEIAMAGLKE-LGYKVEQPKET 59
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
P +L D + W F A + ++ V + G ++
Sbjct: 60 DYPAMMLALSYGDADFTVHAWEQLHASFYAKAGGDDTMVKVGAIMPGVLQGYMIDKKTAD 119
Query: 123 LGIKS---------YQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+ + + A + G PG + +
Sbjct: 120 QYKITSVEDLKKPEIAKLFDSNDDGKADMTGCNPGWGCEVLVEHHMKAYGLEKTVTD-NR 178
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHP----INSDLNIHYLPGGE------------- 216
S A + + P ++ +W P + ++ +L +
Sbjct: 179 GSYFALMADTIARYQQGKPILYFTWVPQWISSVLIEGRDVVWLTVPKTDLPGGKNDVDTT 238
Query: 217 ---EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV- 272
+ GF +V V+ ++ +K P + L ++ + E+ + N + +
Sbjct: 239 YKGKNLGFAVDTVRAVLNKEFAEKNPVAVKFLSEMQITTDDESAQNLKMHNGENSAADIK 298
Query: 273 --GRTMLRTHPDLLKNWLIGVTTF 294
+ H WL
Sbjct: 299 RHAAEWIAAHRAAYDGWLADARAA 322
>gi|313771685|gb|EFS37651.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL074PA1]
gi|313793785|gb|EFS41816.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL110PA1]
gi|313803098|gb|EFS44306.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL110PA2]
gi|313810508|gb|EFS48222.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL083PA1]
gi|313813858|gb|EFS51572.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL025PA1]
gi|313831549|gb|EFS69263.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL007PA1]
gi|313832535|gb|EFS70249.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL056PA1]
gi|313839276|gb|EFS76990.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL086PA1]
gi|314964760|gb|EFT08860.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL082PA1]
gi|314974900|gb|EFT18995.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL053PA1]
gi|314978007|gb|EFT22101.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL045PA1]
gi|314984581|gb|EFT28673.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL005PA1]
gi|315079272|gb|EFT51275.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL053PA2]
gi|315082265|gb|EFT54241.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL078PA1]
gi|315095485|gb|EFT67461.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL038PA1]
gi|327332782|gb|EGE74514.1| periplasmic binding protein of proline/glycine betaine transport
system [Propionibacterium acnes HL096PA2]
gi|327335174|gb|EGE76884.1| periplasmic binding protein of proline/glycine betaine transport
system [Propionibacterium acnes HL097PA1]
gi|327448403|gb|EGE95057.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL043PA2]
gi|327448477|gb|EGE95131.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL043PA1]
gi|327456117|gb|EGF02772.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL092PA1]
gi|328762057|gb|EGF75562.1| periplasmic binding protein of proline/glycine betaine transport
system [Propionibacterium acnes HL099PA1]
Length = 352
Score = 132 bits (331), Expect = 7e-29, Method: Composition-based stats.
Identities = 55/276 (19%), Positives = 98/276 (35%), Gaps = 11/276 (3%)
Query: 19 ARDADSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGID 77
A D+ T + W + AT + +L++ GY IK V +++ ID
Sbjct: 79 AMKPDTNTSLTIGAFNGWDESWATAGLIKQVLKKD-GYTVTIKGFDAGVGYQATAGGDID 137
Query: 78 IFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKE 137
I W P + ++ + AK +AVN A I + K
Sbjct: 138 IITDSWLPVTQAGYIRKYG-PKLENLGCWYDNAKLTIAVNKNSPAHSIAD---LKKTGSA 193
Query: 138 LGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLS 197
G IY IEPG E + I + L L +S A +Q+++ +
Sbjct: 194 YGNVIYSIEPGAEMTKTIAHQTL-PMYGLSNITLKTSSTPAMLAQLQKATKAGNNVAVTL 252
Query: 198 WEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENE 257
W PH + L + E +Y+ R + P ++L++N+ A +
Sbjct: 253 WRPHWAYDAYPVRDLDDPKNAISNAE-LIYSFGRPGFEKDHPKAAQLIRNLAIDDAHLSS 311
Query: 258 MMKLILNN---KQDRQFVGRTMLRTHPDLLKNWLIG 290
+ L+++ + + D + +WL G
Sbjct: 312 LEHLMVDTTKRGGQEDTAISRWMADNSDWVHDWLAG 347
>gi|37525248|ref|NP_928592.1| glycine betaine transporter periplasmic subunit [Photorhabdus
luminescens subsp. laumondii TTO1]
gi|36784675|emb|CAE13575.1| Glycine betaine-binding periplasmic protein precursor ProX
[Photorhabdus luminescens subsp. laumondii TTO1]
Length = 332
Score = 132 bits (331), Expect = 7e-29, Method: Composition-based stats.
Identities = 41/334 (12%), Positives = 96/334 (28%), Gaps = 38/334 (11%)
Query: 1 MYKILAVCLFLTTFS---ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M KI+ + L++ + V+ + ++ T + S LE LGY
Sbjct: 1 MRKIVIWAISLSSLISSQLFAVELPGKGISVQPIQSTLSEETFQTLIVSKALE-KLGYDI 59
Query: 58 N-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
IK + V + S+ + W P V ++ A +
Sbjct: 60 KPIKEVDYNVAYSSIASGDATFMAVSWEPLHNTQYQAAGGNAKFYRVGNYVENAAQGYLI 119
Query: 117 NDVGFALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
+ + + A + G PG I + +
Sbjct: 120 DKKTAEKYNITNIAQLKDPKIAKLFDTNGNGKADLTGCNPGWGCEIAINHHLKAYGLN-N 178
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEEI----- 218
+ + A + + P ++ +W P+ ++ ++ +L
Sbjct: 179 SVEHNQGNYAAMMADTITRYKEGKPILYYTWTPYWVSDVLKPGKDVVWLQVPFSAMPNDE 238
Query: 219 -----------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQ 267
GF + ++ + + P ++L ++ +A N + N +
Sbjct: 239 KIETKLPNGANYGFPPSIMHIAANKKWAEDNPTAAKLFSIMRMPLADINAQNLRMHNGEA 298
Query: 268 DR---QFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
+ ++ H L +W+ G++
Sbjct: 299 SPANIERHANGWIKAHQKLFDSWVKTAVEAAGKN 332
>gi|331648400|ref|ZP_08349488.1| glycine betaine-binding periplasmic protein [Escherichia coli M605]
gi|330908710|gb|EGH37224.1| L-proline glycine betaine binding ABC transporter protein ProX
[Escherichia coli AA86]
gi|331042147|gb|EGI14289.1| glycine betaine-binding periplasmic protein [Escherichia coli M605]
Length = 330
Score = 132 bits (331), Expect = 7e-29, Method: Composition-based stats.
Identities = 41/320 (12%), Positives = 93/320 (29%), Gaps = 36/320 (11%)
Query: 4 ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKL 61
+ A + ++A D V + T+ T + S LE LGY
Sbjct: 6 LFATAFATLISTQTFAADLPGKGITVNPVQSTITEETFQTLLVSRALE-KLGYTVNKPSE 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V + SL + W P + + + GA ++
Sbjct: 65 VDYNVGYTSLASGDATFTAVNWTPLHDNMYEAAGGDKKFYREGVFVNGAAQGYLIDKKTA 124
Query: 122 ALGI---------KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ + + A + G PG I + +
Sbjct: 125 DQYKITNIAQLKDPNIAKLFDTNGDGKADLTGCNPGWGCEGAINHQLAAYGLT-NTVTHN 183
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEEI---------- 218
+ + A + + P + +W P+ ++++ ++ +L
Sbjct: 184 QGNYAAMMADTISRYKEGKPVFYYTWTPYWVSNELKPGKDVVWLQVPFSALPGDKNADTK 243
Query: 219 ------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
GF ++++ V + +K P ++L ++ VA N ++ + K +
Sbjct: 244 LPNGANYGFPVSTMHIVANKAWAEKNPAAAKLFAIMQLPVADINAQNAIMHDGKASEDDI 303
Query: 273 ---GRTMLRTHPDLLKNWLI 289
++ H W+
Sbjct: 304 QGHVDGWIKAHQQQFDGWVN 323
>gi|227512914|ref|ZP_03942963.1| glycine betaine ABC superfamily ATP binding cassette transporter,
binding protein [Lactobacillus buchneri ATCC 11577]
gi|227523042|ref|ZP_03953091.1| glycine betaine ABC superfamily ATP binding cassette transporter,
binding protein [Lactobacillus hilgardii ATCC 8290]
gi|227083914|gb|EEI19226.1| glycine betaine ABC superfamily ATP binding cassette transporter,
binding protein [Lactobacillus buchneri ATCC 11577]
gi|227089860|gb|EEI25172.1| glycine betaine ABC superfamily ATP binding cassette transporter,
binding protein [Lactobacillus hilgardii ATCC 8290]
Length = 300
Score = 132 bits (331), Expect = 7e-29, Method: Composition-based stats.
Identities = 32/162 (19%), Positives = 60/162 (37%), Gaps = 2/162 (1%)
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
K++ I GIE G + ++L +S A S + + R P V
Sbjct: 39 KQINYTITGIEAGAGEMATTQKAMKAYGLDKGNWQLQTSSTAAMLSTLGKSIRYKQPIVI 98
Query: 196 LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
W PH + + + +L + I G E + T+VR P LL +
Sbjct: 99 TGWTPHWMFTKYKLKFLKDPKNIYGKTE-DINTIVRKGLKKDKPEAYELLNRFHWRPEQM 157
Query: 256 NEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQ 297
+ +M + N+ + + ++ + + +W G+ GQ
Sbjct: 158 SSVMLKV-NHGESPRKAAGDWIKQNQAQVNSWTKGIKHVHGQ 198
Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 2/103 (1%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWY 84
++ W A+T + + L +GYK I+ + + + S+ K D + W
Sbjct: 197 GQKLKLTYVAWDSEIASTNVVANAL-RSIGYKVTIQAMELQPMWTSIATKAADGTVSAWL 255
Query: 85 PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKS 127
P+ + +G + ENL GAK LAV + S
Sbjct: 256 PNTQGLYYN-DFKGRFDDLGENLHGAKVGLAVPTYMKNVNSIS 297
>gi|270265365|ref|ZP_06193626.1| transporter [Serratia odorifera 4Rx13]
gi|270040769|gb|EFA13872.1| transporter [Serratia odorifera 4Rx13]
Length = 333
Score = 132 bits (331), Expect = 7e-29, Method: Composition-based stats.
Identities = 37/319 (11%), Positives = 87/319 (27%), Gaps = 36/319 (11%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLA 63
+A+ + + ++ A V+ + ++ T + S LE LGY + +
Sbjct: 9 VALTTLIGSQAVFAADLPGKGVTVQPLQSTISEETFQTQLVSKALE-KLGYDVKDTREVD 67
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
V + S+ + W P + + GA ++
Sbjct: 68 YNVAYTSIASGDATFLAVNWDPLHADQYKAAGGDAKFYREGVYVNGAAQGYLIDKKTADK 127
Query: 124 GIKSYQD---------IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
+ + + + A + G PG I I S +
Sbjct: 128 YHITNVEQLKDPKIAKLFDTNGDGKADLTGCTPGWGCEAVINHHIEAYGLSKT-VEHNQG 186
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEP----HPINSDLNIHYLPGGEE------------- 217
+ A + + P ++ +W P + ++ +L
Sbjct: 187 NYAAMIADTITRYKEGKPILYYTWTPYWVSDVLVPGRDVVWLQVPFSSLPGEQKNVDTKL 246
Query: 218 ----ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV- 272
GF ++ + + P ++L +K +A N + + +
Sbjct: 247 PNGANYGFPVNTMRIAANKKWAEANPAAAKLFAIMKLPIADVNAQNLRMHEGQASDADIQ 306
Query: 273 --GRTMLRTHPDLLKNWLI 289
++ H W+
Sbjct: 307 NHVNGWIKAHQATFDGWVK 325
>gi|257126210|ref|YP_003164324.1| substrate-binding region of ABC-type glycine betaine transporter
[Leptotrichia buccalis C-1013-b]
gi|257050149|gb|ACV39333.1| Substrate-binding region of ABC-type glycine betaine transport
system [Leptotrichia buccalis C-1013-b]
Length = 506
Score = 132 bits (331), Expect = 7e-29, Method: Composition-based stats.
Identities = 32/296 (10%), Positives = 85/296 (28%), Gaps = 20/296 (6%)
Query: 3 KILAVCLFLTTFSISYARDADSC----TPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
KI+ + + + + T+ M +++E+ +
Sbjct: 208 KIILISFIALFMVFFAGNLVMNKQSKRDKIVISGKLGTEPEILINMYKLLIEDEMNVDVE 267
Query: 59 IK--LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGA---KYM 113
+K F +LK+ +DI+ + + F+ + V E + KY
Sbjct: 268 LKSGFGTTSFNFNALKSGEVDIYPEFTGTVVFTFLNETPSSNIKEQVYEQARNGILKKYN 327
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYG------IEPGNEGNQRILDMINNNKFSLK 167
+ + + K+ E + + +D + K K
Sbjct: 328 MVLLKPMAYNNTYAVGVSKKFASENNLTKISDLARVKDKAKVGFTREFVDREDGYKGMKK 387
Query: 168 GFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV 226
+ ++ ++ V ++ + L + +
Sbjct: 388 LYNFEFPDVKEFEPKLRYVAVQSGDINVIDAYSTDSELEQYKMTVLEDDKNLF--PPYQG 445
Query: 227 YTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+++ + L K P + ++L + K + +M + N + V + L +
Sbjct: 446 APLMKRETLKKYPKLEQILNKLHNKVTDDEMRKMNFEVGVNGKKAYDVAKEYLIKN 501
>gi|296104356|ref|YP_003614502.1| glycine betaine/proline transport system substrate-binding protein
[Enterobacter cloacae subsp. cloacae ATCC 13047]
gi|295058815|gb|ADF63553.1| glycine betaine/proline transport system substrate-binding protein
[Enterobacter cloacae subsp. cloacae ATCC 13047]
Length = 331
Score = 132 bits (331), Expect = 8e-29, Method: Composition-based stats.
Identities = 42/323 (13%), Positives = 94/323 (29%), Gaps = 37/323 (11%)
Query: 2 YKILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI- 59
+ A + ++A D V+ + ++ + T + S LE LGY N
Sbjct: 4 KVLFATAFATLVSTSAFAADLPGKGITVQPVQSTISEESFQTLIVSRALE-KLGYTVNTP 62
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ V + S+ + W P + A + + GA ++
Sbjct: 63 SEVDYNVGYTSIASGDATFTAVNWQPLHDDMYAAAGGDKKFYREGTFVTGAAQGYLIDKK 122
Query: 120 GFALGIKSYQD---------IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
+ + + + A + G PG I +
Sbjct: 123 TADQYHITNIEQLKDPKIAKLFDTNGDGKADMMGCSPGWGCEAVINHQNKAYGLAKT-VD 181
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEE--------- 217
+ + A + + P ++ +W P+ ++ ++ +L
Sbjct: 182 VSHGNYSAMMADTIARFKEGKPVIYYTWTPYWVSDVLKPGKDVVWLQVPFSSLPGEQKDI 241
Query: 218 --------ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDR 269
GF +++ V + +K P ++L +K +A N ++ K
Sbjct: 242 DTKLPNGMNYGFPVNTMHIVANKAWAEKNPAAAKLFSVMKLPLADINAQNAMMHAGKSSE 301
Query: 270 QFV---GRTMLRTHPDLLKNWLI 289
V ++ H W+
Sbjct: 302 ADVKGHVDGWIKAHQQQFDGWVK 324
>gi|237801427|ref|ZP_04589888.1| glycine betaine/L-proline ABC transporter periplasmic
substrate-binding protein [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|298488812|ref|ZP_07006839.1| Glycine betaine/L-proline ABC transporter, periplasmic substrate-
binding protein [Pseudomonas savastanoi pv. savastanoi
NCPPB 3335]
gi|115265545|dbj|BAF32807.1| Periplasmic substrate-binding protein of glycine
betaine/carnitine/choline ABC transporter [Pseudomonas
syringae pv. actinidiae]
gi|298156653|gb|EFH97746.1| Glycine betaine/L-proline ABC transporter, periplasmic substrate-
binding protein [Pseudomonas savastanoi pv. savastanoi
NCPPB 3335]
gi|330965279|gb|EGH65539.1| glycine betaine/L-proline ABC transporter periplasmic
substrate-binding protein [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|331024286|gb|EGI04343.1| glycine betaine/L-proline ABC transporter periplasmic
substrate-binding protein [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 297
Score = 132 bits (331), Expect = 8e-29, Method: Composition-based stats.
Identities = 44/304 (14%), Positives = 91/304 (29%), Gaps = 32/304 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M +I A +R +T+ + +T+ L GY +
Sbjct: 1 MKRI--CLFLGFALLFPAFAQAAEKPLLRVGARVFTEQTILSELTAQYLRTK-GYDVQVT 57
Query: 61 LL-AVPVTFRSLKNKGIDIFMGYWYPSLEKF---------------IAPYLEEGSIKLVA 104
+ + ++ +D+ Y SL + + + + ++
Sbjct: 58 GGLGSSLARSAQESAQLDLIWEYTGVSLVNYNHVDEKLDSEQTYARVKELDAKKGLVWLS 117
Query: 105 ENLQGAKYMLAVNDVGFALG-----IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI 159
+ Y LA+ + + K + + G + + +L M+
Sbjct: 118 PSKFSNTYALALPQKIADKYPQVNTMTDLTKVLKDEAKEGHLVALDTEFANRSDGLLGMV 177
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
+ +L + + RN L + + + L +
Sbjct: 178 KHYDMNLGREN----TRQMDAGLVYTALRNGQVFAGLVYTTDGRLNAFKLKVLED--DKR 231
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
F + + V+R DYLDK P+I+ LLK + ++ I + V L
Sbjct: 232 YFPDYTAAPVIRQDYLDKHPDIAPLLKPLADLLDTQTMIDLNARIDVGHESPSKVAADFL 291
Query: 278 RTHP 281
R HP
Sbjct: 292 RQHP 295
>gi|289427929|ref|ZP_06429633.1| ABC transporter, substrate-binding protein, QAT family
[Propionibacterium acnes J165]
gi|289158812|gb|EFD07012.1| ABC transporter, substrate-binding protein, QAT family
[Propionibacterium acnes J165]
gi|332676414|gb|AEE73230.1| periplasmic binding protein of proline/glycine betaine transport
system [Propionibacterium acnes 266]
Length = 347
Score = 132 bits (331), Expect = 8e-29, Method: Composition-based stats.
Identities = 55/276 (19%), Positives = 98/276 (35%), Gaps = 11/276 (3%)
Query: 19 ARDADSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGID 77
A D+ T + W + AT + +L++ GY IK V +++ ID
Sbjct: 74 AMKPDTNTSLTIGAFNGWDESWATAGLIKQVLKKD-GYTVTIKGFDAGVGYQATAGGDID 132
Query: 78 IFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKE 137
I W P + ++ + AK +AVN A I + K
Sbjct: 133 IITDSWLPVTQAGYIRKYG-PKLENLGCWYDNAKLTIAVNKNSPAHSIAD---LKKTGSA 188
Query: 138 LGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLS 197
G IY IEPG E + I + L L +S A +Q+++ +
Sbjct: 189 YGNVIYSIEPGAEMTKTIAHQTL-PMYGLSNITLKTSSTPAMLAQLQKATKAGNNVAVTL 247
Query: 198 WEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENE 257
W PH + L + E +Y+ R + P ++L++N+ A +
Sbjct: 248 WRPHWAYDAYPVRDLDDPKNAISNAE-LIYSFGRPGFEKDHPKAAQLIRNLAIDDAHLSS 306
Query: 258 MMKLILNN---KQDRQFVGRTMLRTHPDLLKNWLIG 290
+ L+++ + + D + +WL G
Sbjct: 307 LEHLMVDTTKRGGQEDTAISRWMADNSDWVHDWLAG 342
>gi|313763822|gb|EFS35186.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL013PA1]
gi|313817015|gb|EFS54729.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL059PA1]
gi|313829821|gb|EFS67535.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL063PA2]
gi|314916583|gb|EFS80414.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL005PA4]
gi|314918945|gb|EFS82776.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL050PA1]
gi|314920966|gb|EFS84797.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL050PA3]
gi|314932371|gb|EFS96202.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL067PA1]
gi|314956680|gb|EFT00932.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL027PA1]
gi|314959591|gb|EFT03693.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL002PA1]
gi|314968735|gb|EFT12833.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL037PA1]
gi|315100142|gb|EFT72118.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL059PA2]
gi|315102464|gb|EFT74440.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL046PA1]
gi|315109619|gb|EFT81595.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL030PA2]
gi|327455788|gb|EGF02443.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL087PA3]
gi|327457933|gb|EGF04588.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL083PA2]
gi|328757103|gb|EGF70719.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL087PA1]
gi|328757481|gb|EGF71097.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL025PA2]
Length = 352
Score = 132 bits (331), Expect = 8e-29, Method: Composition-based stats.
Identities = 55/276 (19%), Positives = 98/276 (35%), Gaps = 11/276 (3%)
Query: 19 ARDADSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGID 77
A D+ T + W + AT + +L++ GY IK V +++ ID
Sbjct: 79 AMKPDTNTSLTIGAFNGWDESWATAGLIKQVLKKD-GYTVTIKGFDAGVGYQATAGGDID 137
Query: 78 IFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKE 137
I W P + ++ + AK +AVN A I + K
Sbjct: 138 IITDSWLPVTQAGYIRKYG-PKLENLGCWYDNAKLTIAVNKNSPAHSIAD---LKKTGSA 193
Query: 138 LGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLS 197
G IY IEPG E + I + L L +S A +Q+++ +
Sbjct: 194 YGNVIYSIEPGAEMTKTIAHQTL-PMYGLSSITLKTSSTPAMLAQLQKATKAGNNVAVTL 252
Query: 198 WEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENE 257
W PH + L + E +Y+ R + P ++L++N+ A +
Sbjct: 253 WRPHWAYDAYPVRDLDDPKNAISNAE-LIYSFGRPGFEKDHPKAAQLIRNLAIDDAHLSS 311
Query: 258 MMKLILNN---KQDRQFVGRTMLRTHPDLLKNWLIG 290
+ L+++ + + D + +WL G
Sbjct: 312 LEHLMVDTTKRGGQEDTAISRWMADNSDWVHDWLAG 347
>gi|281179686|dbj|BAI56016.1| glycine/betaine/proline ABC transporter substrate binding component
[Escherichia coli SE15]
Length = 330
Score = 132 bits (331), Expect = 8e-29, Method: Composition-based stats.
Identities = 41/320 (12%), Positives = 93/320 (29%), Gaps = 36/320 (11%)
Query: 4 ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKL 61
+ A + ++A D V + T+ T + S LE LGY
Sbjct: 6 LFATAFATLISTQTFAADLPGKGITVNPVQSTITEETFQTLLVSRALE-KLGYTVNKPSE 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V + SL + W P + + + GA ++
Sbjct: 65 VDYNVGYTSLASGDATFTAVNWTPLHDNMYEAAGGDKKFYREGVFVNGAAQGYLIDKKTA 124
Query: 122 ALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ + + A + G PG I + +
Sbjct: 125 DQYKITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGWGCEGAINHQLAAYGLT-NTVTHN 183
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEEI---------- 218
+ + A + + P + +W P+ ++++ ++ +L
Sbjct: 184 QGNYAAMMADTISRYKEGKPVFYYTWTPYWVSNELKPGKDVVWLQVPFSALPGDKNANTK 243
Query: 219 ------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
GF ++++ V + +K P ++L ++ VA N ++ + K +
Sbjct: 244 LPNGANYGFPVSTMHIVANKAWAEKNPAAAKLFAIMQLPVADINAQNAIMHDGKASEDDI 303
Query: 273 ---GRTMLRTHPDLLKNWLI 289
++ H W+
Sbjct: 304 QGHVDGWIKAHQQQFDGWVN 323
>gi|330861136|emb|CBX71399.1| glycine betaine-binding periplasmic protein [Yersinia
enterocolitica W22703]
Length = 334
Score = 132 bits (331), Expect = 8e-29, Method: Composition-based stats.
Identities = 46/336 (13%), Positives = 97/336 (28%), Gaps = 39/336 (11%)
Query: 1 MYKILAVCLFLTTFS---ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M K L LTT +S A V+ + ++ T++ + LE LGY
Sbjct: 1 MRKTGIWALALTTLISTQLSAAELPGKGITVQPLQSTISEETFQTSLVNKALE-KLGYNV 59
Query: 58 N-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
K + V + S+ W P A + ++G +
Sbjct: 60 QPTKEVDYNVAYSSIAAGDATYLAVNWEPLHNDQYAAAGGDAKFYRQGNFIEGLAQGYLI 119
Query: 117 NDVGFALGIKSYQD---------IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
+ + + + + A + G PG I I S
Sbjct: 120 DKKTADKYHITNIEQLKDPKIAKLFDANNDGKADLTGCNPGWGCEAPINHQIQAYGLSDT 179
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP----INSDLNIHYLPGGEE------ 217
+ + A + + P ++ +W P+ + ++ +L
Sbjct: 180 -ITHNQGNYAAMIADTITRYKEGKPILYYTWTPYWVSDVLVPGRDVVWLQVPFSSLPDKT 238
Query: 218 ---------ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI---LNN 265
GF + ++ V + + P ++L +K S+ N + ++
Sbjct: 239 IDTQLSNGANYGFPPSVMHIVANKKWAEANPAAAKLFSIMKLSINDVNAQNMRMHAGESS 298
Query: 266 KQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSR 301
D + ++ H W+ T + +
Sbjct: 299 DADIERHVNGWIQAHQATFDGWVK--TAAEAGNAQA 332
>gi|238762665|ref|ZP_04623634.1| Osmoprotectant transport protein OusBX [Yersinia kristensenii ATCC
33638]
gi|238698970|gb|EEP91718.1| Osmoprotectant transport protein OusBX [Yersinia kristensenii ATCC
33638]
Length = 327
Score = 132 bits (331), Expect = 8e-29, Method: Composition-based stats.
Identities = 40/317 (12%), Positives = 90/317 (28%), Gaps = 34/317 (10%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLA 63
+ L + +S A V+ + ++ T++ + LE LGY K +
Sbjct: 1 MLALTTLISTQLSAAELPGKGVTVQPLQSTISEETFQTSLVNKALE-KLGYDVQPTKEVD 59
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
V + S+ W P A + ++G ++
Sbjct: 60 YNVAYSSIAAGDATYLAVNWEPLHNDQYAAAGGDAKFYRQGNFIEGLAQGYLIDKKTADK 119
Query: 124 GIKSYQD---------IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
+ + + + A + G PG I I S +
Sbjct: 120 YHITNIEQLKDPKIAKLFDANNDGKADLTGCNPGWGCEAPINHQIQAYGLSDT-VTHNQG 178
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEP----HPINSDLNIHYLPGGEE------------- 217
+ A + + P ++ +W P + ++ +L
Sbjct: 179 NYAAMIADTITRYKEGKPILYYTWTPYWVSDVLVPGRDVIWLQVPFSSLPDKTIDTQLSN 238
Query: 218 --ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI---LNNKQDRQFV 272
GF + ++ V + + P ++L +K S+ N + ++ D +
Sbjct: 239 GANYGFPPSVMHIVANKKWAEANPAAAKLFSIMKLSINDVNAQNMRMHAGESSDADIERH 298
Query: 273 GRTMLRTHPDLLKNWLI 289
++ H W+
Sbjct: 299 VNGWIQAHQTTFDGWVK 315
>gi|284992596|ref|YP_003411150.1| Substrate-binding region of ABC-type glycine betaine transport
system [Geodermatophilus obscurus DSM 43160]
gi|284065841|gb|ADB76779.1| Substrate-binding region of ABC-type glycine betaine transport
system [Geodermatophilus obscurus DSM 43160]
Length = 319
Score = 132 bits (331), Expect = 8e-29, Method: Composition-based stats.
Identities = 53/293 (18%), Positives = 97/293 (33%), Gaps = 24/293 (8%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEI--LGYKT-NIKLLAVPVTFRSL 71
A V+ A WT T ++ S I + LG T L +
Sbjct: 31 GADSATGGGDGITVQAAQFSWTAAGLTNSILSEIAADRPELGVATLQTTQLDPAAAWAGA 90
Query: 72 KNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG-----IK 126
+ ID+ P+ ++ +++V+E A V A G +
Sbjct: 91 QRGDIDLLTEVALPNQQELADSA--AEQVEIVSETYGDAAQGWFVPAYAVAPGGPLEGLT 148
Query: 127 SYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRD 186
S + Y +LG K Y +PG ++ + +L + +SE A +Q+
Sbjct: 149 SVTQLNDYADQLGNKFYDADPGYITTEQNAKRLAGYGITL---EHVVSSEAAELAQLENS 205
Query: 187 QRNNIPAVFLSWEPHPINSDLNIHYLPGG-----------EEISGFGEASVYTVVRSDYL 235
P V + PH + + ++ L S ++
Sbjct: 206 YSRQEPIVLYLYHPHAVFAQYDMVQLEEPTPYTEGCLTTGNGACAMPSYSANIAASAELQ 265
Query: 236 DKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
++ P LL +++ SV EM K + + +D V R + H + W+
Sbjct: 266 EQAPEFVDLLVDLRISVEEMEEMQKQVDVDGEDVGTVARQWVDEHATQIDEWV 318
>gi|332970596|gb|EGK09582.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Desmospora sp. 8437]
Length = 508
Score = 132 bits (331), Expect = 8e-29, Method: Composition-based stats.
Identities = 31/279 (11%), Positives = 80/279 (28%), Gaps = 32/279 (11%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGIDIFM 80
+ + + M +++EE K +K F++L+ K ID++
Sbjct: 235 GTGGDLVIGGKLGAEPEILIHMYKILIEEEADLKVKLKPDLGGTDFLFKALQKKDIDLYP 294
Query: 81 GYWYPSLEKFIAP-----------------YLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+ ++ + ++ + L+ Y LAV
Sbjct: 295 EFTGTAITSLLKEEAVGTDRDQVYRQAAEGMKKKYDMVLLEPMAYNNTYALAVRKETADK 354
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
K + D + + K ++ + +
Sbjct: 355 YNLHTISDLKPH--------AADLMAGFTFEFKDRSDGYRGIRKKYKFTLPRIRTMDAGL 406
Query: 184 R-RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
R + ++ + ++ + N+ L + + ++R + L+K P +
Sbjct: 407 RSKAIQSGDVDLIDAYSTDGYMIEYNLVALKDDKNLF--PPYQGAPLMRQETLEKHPELE 464
Query: 243 RLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+ L + + + M + +D V R L+
Sbjct: 465 KALNRLAGQITEEEMQRMNHRVDFKDEDPARVAREFLKK 503
>gi|332162775|ref|YP_004299352.1| glycine betaine transporter periplasmic subunit [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|325667005|gb|ADZ43649.1| glycine betaine transporter periplasmic subunit [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
Length = 334
Score = 132 bits (331), Expect = 8e-29, Method: Composition-based stats.
Identities = 46/336 (13%), Positives = 97/336 (28%), Gaps = 39/336 (11%)
Query: 1 MYKILAVCLFLTTFS---ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M K L LTT +S A V+ + ++ T++ + LE LGY
Sbjct: 1 MRKTGIWALALTTLISTQLSAAELPGKGITVQPLQSTISEETFQTSLVNKALE-KLGYNV 59
Query: 58 N-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
K + V + S+ W P A + ++G +
Sbjct: 60 QPTKEVDYNVAYSSIAAGDATYLAVNWEPLHNDQYAAAGGDAKFYRQGNFIEGLAQGYLI 119
Query: 117 NDVGFALGIKSYQD---------IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
+ + + + + A + G PG I I S
Sbjct: 120 DKKTADKYHITNIEQLKDPKIAKLFDANNDGKADLTGCNPGWGCEAPINHQIQAYGLSDT 179
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP----INSDLNIHYLPGGEE------ 217
+ + A + + P ++ +W P+ + ++ +L
Sbjct: 180 -VTHNQGNYAAMIADTITRYKEGKPILYYTWTPYWVSDVLVPGRDVVWLQVPFSSLPDKT 238
Query: 218 ---------ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI---LNN 265
GF + ++ V + + P ++L +K S+ N + ++
Sbjct: 239 IDTQLSNGANYGFPPSVMHIVANKKWAEANPAAAKLFSIMKLSINDVNAQNMRMHAGESS 298
Query: 266 KQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSR 301
D + ++ H W+ T + +
Sbjct: 299 DADIERHVNGWIQAHQATFDGWVK--TAAEAGNAQA 332
>gi|330969557|gb|EGH69623.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. aceris str. M302273PT]
Length = 297
Score = 132 bits (331), Expect = 8e-29, Method: Composition-based stats.
Identities = 41/304 (13%), Positives = 89/304 (29%), Gaps = 32/304 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M +I A +R +T+ +T+ L Y I
Sbjct: 1 MKRI--CLFLGFALLFPALAQAAEKPLLRVGARVFTEQTMLAELTAQYLRTK-NYDVQIT 57
Query: 61 LL-AVPVTFRSLKNKGIDIFMGYWYPSLEKF---------------IAPYLEEGSIKLVA 104
+ + ++ +D+ Y SL + + + + ++
Sbjct: 58 GGLGSNLARSAQESGQLDLLWEYTGVSLVAYNHIDEKLDSAQTYARVKEVDAKKGLAWLS 117
Query: 105 ENLQGAKYMLAVNDVGFALG-----IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI 159
+ Y LA+ + + K + + G + + ++ M+
Sbjct: 118 PSKFNNTYALALPQKVADKYPQVNTMTDLTKVLKDEAKEGHVVALDTEFANRSDGLIGMV 177
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
+ +L + + RN L + + + L +
Sbjct: 178 KHYDMNLGREN----TRQMDAGLVYTALRNGQVFAGLVYTTDGRLNAFKLKVLED--DKH 231
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
F + + V+R +YLDK P+I+ LLK + ++ + + V L
Sbjct: 232 YFPDYTAAPVIRQEYLDKHPDIATLLKPLADLLDNQTMIDLNARVDVGHESPSVVAADFL 291
Query: 278 RTHP 281
R HP
Sbjct: 292 RQHP 295
>gi|117624915|ref|YP_853858.1| glycine betaine transporter periplasmic subunit [Escherichia coli
APEC O1]
gi|162138383|ref|YP_542026.2| glycine betaine transporter periplasmic subunit [Escherichia coli
UTI89]
gi|218559671|ref|YP_002392584.1| glycine betaine transporter periplasmic subunit [Escherichia coli
S88]
gi|218701174|ref|YP_002408803.1| glycine betaine transporter periplasmic subunit [Escherichia coli
IAI39]
gi|306812440|ref|ZP_07446638.1| glycine betaine transporter periplasmic subunit [Escherichia coli
NC101]
gi|115514039|gb|ABJ02114.1| glycine betaine transporter subunit [Escherichia coli APEC O1]
gi|218366440|emb|CAR04192.1| glycine betaine transporter subunit ; periplasmic-binding component
of ABC superfamily [Escherichia coli S88]
gi|218371160|emb|CAR18991.1| glycine betaine transporter subunit ; periplasmic-binding component
of ABC superfamily [Escherichia coli IAI39]
gi|294493838|gb|ADE92594.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Escherichia coli IHE3034]
gi|305854478|gb|EFM54916.1| glycine betaine transporter periplasmic subunit [Escherichia coli
NC101]
gi|307625749|gb|ADN70053.1| glycine betaine transporter periplasmic subunit [Escherichia coli
UM146]
gi|315284930|gb|EFU44375.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 110-3]
gi|320194819|gb|EFW69448.1| L-proline glycine betaine binding ABC transporter protein ProX
[Escherichia coli WV_060327]
gi|323951099|gb|EGB46975.1| glycine betaine/proline transport system substrate-binding protein
[Escherichia coli H252]
gi|323957108|gb|EGB52833.1| glycine betaine/proline transport system substrate-binding protein
[Escherichia coli H263]
gi|324005776|gb|EGB74995.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 57-2]
Length = 330
Score = 132 bits (331), Expect = 9e-29, Method: Composition-based stats.
Identities = 41/320 (12%), Positives = 93/320 (29%), Gaps = 36/320 (11%)
Query: 4 ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKL 61
+ A + ++A D V + T+ T + S LE LGY
Sbjct: 6 LFATAFATLISTQTFAADLPGKGITVNPVQSTITEETFQTLLVSRALE-KLGYTVNKPSE 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V + SL + W P + + + GA ++
Sbjct: 65 VDYNVGYTSLASGDATFTAVNWTPLHDNMYEAAGGDKKFYREGVFVNGAAQGYLIDKKTA 124
Query: 122 ALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ + + A + G PG I + +
Sbjct: 125 DQYKITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGWGCEGAINHQLAAYGLT-NTVTHN 183
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEEI---------- 218
+ + A + + P + +W P+ ++++ ++ +L
Sbjct: 184 QGNYAAMMADTISRYKEGKPVFYYTWTPYWVSNELKPGKDVVWLQVPFSALPGDKNADTK 243
Query: 219 ------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
GF ++++ V + +K P ++L ++ VA N ++ + K +
Sbjct: 244 LPNGANYGFPVSTMHIVANKAWAEKNPAAAKLFAIMQLPVADINAQNAIMHDGKASEDDI 303
Query: 273 ---GRTMLRTHPDLLKNWLI 289
++ H W+
Sbjct: 304 QGHVDGWIKAHQQQFDGWVN 323
>gi|47096348|ref|ZP_00233944.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Listeria
monocytogenes str. 1/2a F6854]
gi|47015306|gb|EAL06243.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Listeria
monocytogenes str. 1/2a F6854]
Length = 249
Score = 132 bits (331), Expect = 9e-29, Method: Composition-based stats.
Identities = 30/147 (20%), Positives = 68/147 (46%), Gaps = 2/147 (1%)
Query: 152 NQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHY 211
+ I + ++L +S A S +++ ++ P V W PH + + ++ +
Sbjct: 1 MLATQNAIKDYHLDDDNWQLQTSSTAAMTSTLQKAMKDKRPIVVTGWTPHWMFTKFDLKF 60
Query: 212 LPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQF 271
L + + G E +++T+VR + P+ ++L N ++ +E+M + N+ D +
Sbjct: 61 LDDPKNVYGNAE-NIHTIVRKGLKEDKPSAYQVLDNFFWTAEDMSEVMLEV-NDGVDPEE 118
Query: 272 VGRTMLRTHPDLLKNWLIGVTTFDGQD 298
+ ++ +PD + W GV DG +
Sbjct: 119 AAKKWIKNNPDKVAKWTDGVEKVDGDE 145
Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYW 83
++ W A+T + + L++ +GYK I+ + + + S+ D + W
Sbjct: 142 DGDEIKLTYVAWDSEIASTNVVAEALKQ-VGYKPTIQAMEIQPMWASVATDAADGMVAAW 200
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
P+ +G + + NL+GAK LAV
Sbjct: 201 LPNTSGIYYK-DYKGKFEDLGPNLKGAKIGLAVPKYM 236
>gi|290955277|ref|YP_003486459.1| glycine betaine-binding lipoprotein [Streptomyces scabiei 87.22]
gi|260644803|emb|CBG67888.1| putative glycine betaine-binding lipoprotein [Streptomyces scabiei
87.22]
Length = 331
Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats.
Identities = 39/284 (13%), Positives = 85/284 (29%), Gaps = 19/284 (6%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGY 82
C A W A A+ + + + LG K K L + ++ +D +
Sbjct: 50 AKCGTFNLAVNPWVGYEANAAVIAYVAQNDLGCKVTKKDLKEEIAWQGFGTGEVDAVVEN 109
Query: 83 WYPSLEKFIAPYLEEGSI-KLVAENLQGAKYMLAVNDVGFA--LGIKSYQDIAKYKKELG 139
W + Y+ + V I ++++ KY +
Sbjct: 110 WG--HDDLKKKYITDQKTAVDAGATGNEGLIGWYVPPWLAKAHPDITDWKNLNKYAAKFK 167
Query: 140 AKIYGIEPG---NEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFL 196
G + + + D L + SE A R+ ++N +
Sbjct: 168 TSESGGKGQLLDGDPSFVTNDEALVKNLKLDYKVVYAGSETALIQTFRKAEKNKEWVIGY 227
Query: 197 SWEPHPINSDLNIHYLPGGEE-----------ISGFGEASVYTVVRSDYLDKCPNISRLL 245
+EP S++ + + E + ++ VV + + L+
Sbjct: 228 FYEPQWFMSEVPLVKVKLPEYKQGCDADAEKVACDYPVYTLDKVVAKKFAESGSPAYDLV 287
Query: 246 KNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
K ++ +N + K I +K + + + + + WL
Sbjct: 288 KKFSWTNDDQNIVAKYIAVDKMTPEAAAKKWVDANRVKVDAWLK 331
>gi|238896134|ref|YP_002920870.1| glycine betaine transporter periplasmic subunit [Klebsiella
pneumoniae NTUH-K2044]
gi|238548452|dbj|BAH64803.1| glycine/betaine/proline transport system periplasmic binding
component [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
Length = 332
Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats.
Identities = 43/309 (13%), Positives = 90/309 (29%), Gaps = 36/309 (11%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRSLKN 73
S A V+ A + ++ + T + S LE LGY + V + S+
Sbjct: 19 SAFAADLPGKGITVKPAQSTISEESFQTLLVSRALE-KLGYTVEKPSEVDYNVAYTSIAA 77
Query: 74 KGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD--- 130
W P + A + + GA ++ + D
Sbjct: 78 GDTTFIATNWQPLHDDMYAAAGGDNKFYRKGVYVSGAAQGYLIDKKTAEQYHITSIDQLK 137
Query: 131 ------IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
+ + A + G PG I I+ S + + A +
Sbjct: 138 DPQIAKLFDTNNDGKADLTGCTPGWGCEAVINHQIDAYGLSKT-VTHNQGNYAAMMADTI 196
Query: 185 RDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEE-----------------ISGFGE 223
+ P ++ +W P+ ++ ++ +L GF
Sbjct: 197 ARYKEGKPVLYYTWTPYWVSDVLKPGKDVVWLQVPFSSLPGEQKNIDTKLANGANYGFPV 256
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV---GRTMLRTH 280
+++ V + +K P + L +K +A N ++ + ++ H
Sbjct: 257 NTMHIVANKAWAEKNPAAATLFSVMKLPIADINAENAMMHEGHASEADINGHVDGWIKAH 316
Query: 281 PDLLKNWLI 289
L +W+
Sbjct: 317 QPLFDSWVK 325
>gi|332360370|gb|EGJ38182.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Streptococcus sanguinis
SK49]
Length = 506
Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats.
Identities = 29/303 (9%), Positives = 89/303 (29%), Gaps = 39/303 (12%)
Query: 3 KILAVCLFLTTFSISYARDAD-----SCTPVRFADTGWTDIAATTAMTSVILEEILG--Y 55
+ + + + + + A + M +++EE
Sbjct: 207 RTVFTAFAVLILGLGASYTPSLIPKQEKEHLVIAGKLGPEPEILMNMYKLLIEENTDMTV 266
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------E 97
+++LK +DI+ + + + +
Sbjct: 267 TVKPNFGKTDFLYQALKKGDVDIYPEFTGTITGTLLQSVPKVSNDAEEVFEAARDGIKKQ 326
Query: 98 GSIKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
++ L+ Y +AV +K+ D+ + +L A N+
Sbjct: 327 DNLVLLNHMAYQNTYAIAVPKSIAKEYNLKTISDLKTVQDKLKAGFTL--EFNDREDGNK 384
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ + +L + + + ++ + ++ + ++ L
Sbjct: 385 GLQSVYGLNLNVSTMEP-------ALRYQAIQSGDIQITDAYSTDAELARYDLQVLED-- 435
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F +++++ L+K P + +L + K + + ++M + + + V R
Sbjct: 436 DKHLFPPYQGAPLLKAELLEKHPELEGVLNKLAGKITESQMSQMNYQVGIEGKKSEAVAR 495
Query: 275 TML 277
L
Sbjct: 496 DYL 498
>gi|26109481|gb|AAN81684.1|AE016765_86 Glycine betaine-binding periplasmic protein precursor [Escherichia
coli CFT073]
Length = 346
Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats.
Identities = 41/320 (12%), Positives = 93/320 (29%), Gaps = 36/320 (11%)
Query: 4 ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKL 61
+ A + ++A D V + T+ T + S LE LGY
Sbjct: 22 LFATAFATLISTQTFAADLPGKGITVNPVQSTITEETFQTLLVSRALE-KLGYTVNKPSE 80
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V + SL + W P + + + GA ++
Sbjct: 81 VDYNVGYTSLASGDATFTAVNWTPLHDNMYEAAGGDKKFYREGVFVNGAAQGYLIDKKTA 140
Query: 122 ALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ + + A + G PG I + +
Sbjct: 141 DQYKITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGWGCEGAINHQLAAYGLT-NTVTHN 199
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEEI---------- 218
+ + A + + P + +W P+ ++++ ++ +L
Sbjct: 200 QGNYAAMMADTISRYKEGKPVFYYTWTPYWVSNELKPGKDVVWLQVPFSALPGDKNADTK 259
Query: 219 ------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
GF ++++ V + +K P ++L ++ VA N ++ + K +
Sbjct: 260 LPNGANYGFPVSTMHIVANKAWAEKNPAAAKLFAIMQLPVADINAQNAIMHDGKASEGDI 319
Query: 273 ---GRTMLRTHPDLLKNWLI 289
++ H W+
Sbjct: 320 QGHVDGWIKAHQQQFDGWVN 339
>gi|300718021|ref|YP_003742824.1| glycine betaine/L-proline transport system , glycine
betaine-binding periplasmic protein [Erwinia billingiae
Eb661]
gi|299063857|emb|CAX60977.1| Glycine betaine/L-proline transport system , glycine
betaine-binding periplasmic protein [Erwinia billingiae
Eb661]
Length = 331
Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats.
Identities = 40/310 (12%), Positives = 85/310 (27%), Gaps = 36/310 (11%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRSLKNK 74
+S A V+ + ++ T + S LE LGY + + V + ++
Sbjct: 19 VSAADLPGKGITVKPVQSTISEETFQTLLVSRALE-KLGYTVDQPSEVDYNVAYTTIAAG 77
Query: 75 GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD---- 130
W P + + +QGA ++ + D
Sbjct: 78 DGTFIATNWKPLHDDMYNAAGGDKKFFREGTYVQGAAQGYLIDKKTAEKYHITRIDQLKD 137
Query: 131 -----IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
+ + A + G PG I I S + + A +
Sbjct: 138 PKLAKLFDSNGDGKADLTGCTPGWGCEAVINHQIKAYDLS-NTVVHNQGNYSAMIADTIT 196
Query: 186 DQRNNIPAVFLSWEP----HPINSDLNIHYLPGGEE-----------------ISGFGEA 224
+ P ++ +W P + + +L GF
Sbjct: 197 RFKEGKPILYYTWTPYWVSDVLVPGRDTVWLQVPFSSMPGAQKDVDTKLPNGANYGFPVN 256
Query: 225 SVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV---GRTMLRTHP 281
+++ V + +K P ++L +K +A N + + + ++ H
Sbjct: 257 TMHIVANKAWAEKNPAAAKLFSEMKLPIADINAQNSRMHQGQSSEADINAHVDGWIKGHQ 316
Query: 282 DLLKNWLIGV 291
W+
Sbjct: 317 AQFDGWVKDA 326
>gi|229915806|ref|YP_002884452.1| Substrate-binding region of ABC-type glycine betaine transport
system [Exiguobacterium sp. AT1b]
gi|229467235|gb|ACQ69007.1| Substrate-binding region of ABC-type glycine betaine transport
system [Exiguobacterium sp. AT1b]
Length = 501
Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats.
Identities = 33/299 (11%), Positives = 87/299 (29%), Gaps = 32/299 (10%)
Query: 3 KILAVCLFLTTFSISYARDADSCTP-VRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
K++AV L I+ S + A + M +++EE ++K
Sbjct: 209 KLIAVSTVLALIIITPLAFGRSQQTDLVVAGKLGPEPEILMNMYKLLIEEETDLTVSVKP 268
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE----------------EGSIKLV 103
+ +L++ +DI+ + +L + E E ++
Sbjct: 269 NFGETTFVWGALQSGDVDIYPEFTGTALASLVKETPESNDAGEVYEQAREALAEDGYVML 328
Query: 104 AENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK 163
Y LA+ + + + + D +
Sbjct: 329 EPMKFNNTYALAIPRDYAEAEGITAISDLRNVES--------DIKAGFTLEFTDREDGYP 380
Query: 164 FSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
+ S ++ ++ R + ++ P ++ ++ L +
Sbjct: 381 GLQNEYGFDFPSVVSMEQKLRYRAISRGDVNLVDAYATDPDIAENDLVVLEDDRQFF--P 438
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+++ + L++ P I L + K + +E+ + + + V + L
Sbjct: 439 PYQGAPLMKEETLEEYPEIEDALNQLAGKITDEQMSELNRRVAYGNERAYDVAKDFLEQ 497
>gi|164685928|ref|ZP_01946271.2| ABC transporter, quaternary amine uptake transporter (QAT) family,
permease/periplasmic amine-binding protein [Coxiella
burnetii 'MSU Goat Q177']
gi|165924092|ref|ZP_02219924.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
permease/periplasmic amine-binding protein [Coxiella
burnetii RSA 334]
gi|212218020|ref|YP_002304807.1| glycine betaine transport system permease protein [Coxiella
burnetii CbuK_Q154]
gi|164601450|gb|EAX33180.2| ABC transporter, quaternary amine uptake transporter (QAT) family,
permease/periplasmic amine-binding protein [Coxiella
burnetii 'MSU Goat Q177']
gi|165916469|gb|EDR35073.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
permease/periplasmic amine-binding protein [Coxiella
burnetii RSA 334]
gi|212012282|gb|ACJ19662.1| glycine betaine transport system permease protein [Coxiella
burnetii CbuK_Q154]
Length = 526
Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 32/306 (10%), Positives = 75/306 (24%), Gaps = 37/306 (12%)
Query: 2 YKILAVCLFLTTFSIS--------YARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL 53
KI +F+ F+ + A +++ + + ++E
Sbjct: 217 KKIKLTFIFILLFASLYLMIDTIIPTAFKSKKNTIVIATKNFSEQYILGDIMADMIETRT 276
Query: 54 GYKT--NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFI----------------APYL 95
L + + +L N ID++ Y + + Y
Sbjct: 277 HLTVRKKFNLGSTAIIQNALLNGEIDLYPEYTGTAYLTVLHHANLVSAPQIFKIVKKEYQ 336
Query: 96 EEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRI 155
++ ++ + LAV I + +
Sbjct: 337 QQFNLIWLNPFGFNNSQTLAVRADFAKQHRLKTLSDLAVISP-RLTISAPAEFLKRPDAL 395
Query: 156 LDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG 215
+ F K ++ I + RN V + ++ L
Sbjct: 396 PGLKRVYGFRFKRVIQMQPD------LIYQAIRNKDVNVIEVFTTDGRIPAYHLVPLED- 448
Query: 216 EEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVG 273
+ + V+R +L P + + L + + L+ + + V
Sbjct: 449 -DKHLYPPYYAAPVIREAFLKAHPEVEKALAPLAGLIDEKTMQHLNALVDIKHESPKKVV 507
Query: 274 RTMLRT 279
L
Sbjct: 508 HDFLVE 513
>gi|315303153|ref|ZP_07873824.1| glycine betaine/carnitine/choline-binding protein [Listeria
ivanovii FSL F6-596]
gi|313628484|gb|EFR96946.1| glycine betaine/carnitine/choline-binding protein [Listeria
ivanovii FSL F6-596]
Length = 308
Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 29/278 (10%), Positives = 71/278 (25%), Gaps = 25/278 (8%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGIDIF 79
S +R T+ + + ++E G K I + V +++ N +DI
Sbjct: 30 GGSKDTIRIGAMATTESQIVSNILKELIEHDTGLKVEIVNNLGSTIVQHQAMLNGDVDIT 89
Query: 80 MGYWY---------------PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
+ P E + G
Sbjct: 90 ATRYTGTDLVGPLGEDAIKDPDKALAAVQKGFEERFHQTWFDSYGFANTYVFMVRQDTAK 149
Query: 125 IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
+ ++ +K G++ + + + ++ ++ I
Sbjct: 150 KYNLSKVSDMRKVEDQLTAGVDNSWMEREGDGYKAFSEAYDIQFKKIFP----MQIGLIY 205
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
+N V L + N+ L ++ + + L K P +
Sbjct: 206 TALKNKQMDVALGYSTDGRIPTYNLKLLEDDKKFF--PPYDASALATDEILKKHPELKTT 263
Query: 245 LKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ + K S ++ ++ V + L +
Sbjct: 264 INKLKGKISTEQMQKLNYAADGELKEPSIVAKEFLEKN 301
>gi|270290927|ref|ZP_06197151.1| glycine betaine/carnitine/choline ABC transporter [Pediococcus
acidilactici 7_4]
gi|270280987|gb|EFA26821.1| glycine betaine/carnitine/choline ABC transporter [Pediococcus
acidilactici 7_4]
Length = 510
Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 39/304 (12%), Positives = 72/304 (23%), Gaps = 36/304 (11%)
Query: 2 YKILAVCLFLTTFSISYARDA---DSCTPVRFADTGWTDIAATTAMTSVILEE---ILGY 55
KI L + A ++ M ++EE
Sbjct: 207 KKITISLAILVVAVSGATVAKILTPPTETITIAGKLGSEPDILINMYKDLIEEEAPHTKV 266
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL------------------EE 97
F +LK IDI+ + LE + ++
Sbjct: 267 TLKQNFGETSFLFNALKADKIDIYPEFSGTVLETLVKDAPSQRLSAAQTYATGRKLLAQQ 326
Query: 98 GSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILD 157
+ + Y L V + ++
Sbjct: 327 YQMDYLKPMRYQNTYALVVKKDFAKQHHLENISDLSRIENQLHG--------GMTLEFIN 378
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
+ K K + L + S +N V ++ L + L +
Sbjct: 379 RKDGWKGIQKAYGLEFPVKSMQASLRYSAIKNGQINVADAYSTDSQIRQLGLQVLKD--D 436
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
F +++ + K P + R L + K + A EM + K+ Q V
Sbjct: 437 QHVFPPYQGAPLMKKSFAKKHPQVVRALNRLAGKITEAEMQEMNYQVNVQKRSAQQVAHD 496
Query: 276 MLRT 279
L
Sbjct: 497 YLVN 500
>gi|270290099|ref|ZP_06196325.1| osmoprotectant transport system substrate-binding protein
[Pediococcus acidilactici 7_4]
gi|270281636|gb|EFA27468.1| osmoprotectant transport system substrate-binding protein
[Pediococcus acidilactici 7_4]
Length = 308
Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 38/293 (12%), Positives = 77/293 (26%), Gaps = 29/293 (9%)
Query: 11 LTTFSISYARDAD----SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAV 64
+ T +S S VR A T+ AM ++E + +
Sbjct: 14 VLTVMLSSCGWPGLNGTSGDTVRIAAQNTTEQQIMGAMIQQLIEHDTNLNAEVINNLGSG 73
Query: 65 PVTFRSLKNKGIDIF---------------MGYWYPSLEKFIAPYLEEGSIKLVAENLQG 109
V+F++ K D+ P + + G
Sbjct: 74 TVSFQAQKRDEADLTSIRFSGTDYQTILHGPQGKSPQAVNDYVNKEFDRRYDMTYFPTYG 133
Query: 110 AKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
+ ++ KK GI+ + ++ +
Sbjct: 134 FADTYQFMVTQDFAKKHHIETVSDLKKIAPKMKVGIDQTWLSRKGDGYEDFKKRYGFQFG 193
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV 229
+ + +N L + ++ L + S V
Sbjct: 194 HVYP----MQMGLLYNALASNKMDAVLGYSTDGRVRSYHLKLLKDDRQFF--PPYSASVV 247
Query: 230 VRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
V + L K P ++ +L + K S+ E+ + NN ++ V L+ H
Sbjct: 248 VNNKALKKYPQLAPVLHKLDGKISLETMQELNYQVDNNLKEPSVVASEFLKAH 300
>gi|213970350|ref|ZP_03398479.1| glycine betaine ABC transporter, periplasmic glycine
betaine-binding protein [Pseudomonas syringae pv. tomato
T1]
gi|302132546|ref|ZP_07258536.1| glycine betaine transporter periplasmic subunit [Pseudomonas
syringae pv. tomato NCPPB 1108]
gi|213924821|gb|EEB58387.1| glycine betaine ABC transporter, periplasmic glycine
betaine-binding protein [Pseudomonas syringae pv. tomato
T1]
Length = 325
Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 41/324 (12%), Positives = 89/324 (27%), Gaps = 35/324 (10%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLL 62
+ + L L+ S A++ + + + L+E LGYK K
Sbjct: 1 MTVLALALSPLMASAAQEPGKGVSITPIFPTIAEERFRGEIAMAGLKE-LGYKVEQPKET 59
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
P +L D + W F A + ++ V + G ++
Sbjct: 60 DYPAMMLALSYGDADFTVHAWEQLHASFYAKAGGDDTMVKVGAIMPGVLQGYMIDKKTAD 119
Query: 123 LGIKS---------YQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+ + + A + G PG + +
Sbjct: 120 QYKITSVEDLKKPEIAKLFDSNDDGKADMTGCNPGWGCEVLVEHHMKAYGLEKTVTD-NR 178
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHP----INSDLNIHYLPGGE------------- 216
S A + + P ++ +W P + ++ +L +
Sbjct: 179 GSYFALMADTIARYQQGKPILYFTWVPQWISSVLIEGRDVVWLTVPKTDLPGGKNDVDTT 238
Query: 217 ---EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV- 272
+ GF +V V+ ++ +K P + L ++ + E+ + N + +
Sbjct: 239 YKGKNLGFAVDTVRAVLNKEFAEKNPVAVKFLSEMQITTDDESAQNLKMHNGENSAADIK 298
Query: 273 --GRTMLRTHPDLLKNWLIGVTTF 294
+ H WL
Sbjct: 299 RHAAEWIAAHRAAYDGWLADARAA 322
>gi|85059884|ref|YP_455586.1| glycine betaine transporter periplasmic subunit [Sodalis
glossinidius str. 'morsitans']
gi|84780404|dbj|BAE75181.1| glycine betaine/L-proline ABC transporter periplasmic component
[Sodalis glossinidius str. 'morsitans']
Length = 333
Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 45/326 (13%), Positives = 90/326 (27%), Gaps = 40/326 (12%)
Query: 1 MYKI----LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
M KI A+ + A ++ + T+ T + LE LGY
Sbjct: 1 MRKIGLGAFALTAVFAAQTTFAAELPGKSIQIQPVQSTITEETFQTLLVDKALE-KLGYS 59
Query: 57 TN-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
+ + V + S+ + W P E ++GA
Sbjct: 60 VQSPREVDYNVAYTSIASGDATFMAVNWDPLHADQYQAAAGEAKFYRQGNYVEGAAQGYL 119
Query: 116 VNDVGFALGIKSYQD---------IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSL 166
++ + D + + A + G PG I I S
Sbjct: 120 IDKKTAEKYHITSIDQLKDLKIAKLFDANGDGKADLSGCTPGWGCEVVINHHIKAYGLSA 179
Query: 167 KGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP----INSDLNIHYLPGGEE----- 217
+ + A + + P ++ +W P+ + ++ +L
Sbjct: 180 T-VEHNQGNYAAIMADTISRFKEGKPILYYTWMPYWVSNVLVPGRDVVWLQVPFSSLPRE 238
Query: 218 ------------ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNN 265
GF S+ V + + P ++L +K +A N +
Sbjct: 239 QKTISTKLPNGTDYGFPVNSMRIVANKKWAEANPAAAKLFAIMKLPIADINAQNARMHQG 298
Query: 266 KQDRQFVGRT---MLRTHPDLLKNWL 288
+ + R ++ H L W+
Sbjct: 299 EAQEADIKRQTDGWIKAHQALFDGWV 324
>gi|331015471|gb|EGH95527.1| glycine betaine transporter periplasmic subunit [Pseudomonas
syringae pv. lachrymans str. M302278PT]
Length = 325
Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 41/324 (12%), Positives = 90/324 (27%), Gaps = 35/324 (10%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLL 62
+ + L L+ S A++ + + + + L+E LGYK K
Sbjct: 1 MTVLALALSPLMASAAQEPGNGVSITPIFPTIAEERFRGEIAMAGLKE-LGYKVEQPKET 59
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
P +L D + W F A + ++ V + G ++
Sbjct: 60 DYPAMMLALSYGDADFTVHAWEQLHASFYAKAGGDDTMVKVGAIMPGVLQGYMIDKKTAD 119
Query: 123 LGIKS---------YQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+ + + A + G PG + +
Sbjct: 120 QYKITSVEDLKKPEIAKLFDSNDDGKADMTGCNPGWGCEVLVEHHMKAYGLEKTVTD-NR 178
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHP----INSDLNIHYLPGGE------------- 216
S A + + P ++ +W P + ++ +L +
Sbjct: 179 GSYFALMADTIARYQQGKPILYFTWVPQWISSVLIEGRDVVWLTVPKTDLPGGKNDVDTT 238
Query: 217 ---EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV- 272
+ GF +V V+ ++ +K P + L ++ + E+ + N + +
Sbjct: 239 YKGKNLGFAVDTVRAVLNKEFAEKNPVAVKFLSEMQITTDDESAQNLKMHNGENSAADIK 298
Query: 273 --GRTMLRTHPDLLKNWLIGVTTF 294
+ H WL
Sbjct: 299 RHAAEWIAAHRAAYDGWLADARAA 322
>gi|332637706|ref|ZP_08416569.1| glycine betaine ABC transporter periplasmic protein [Weissella
cibaria KACC 11862]
Length = 507
Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 37/301 (12%), Positives = 86/301 (28%), Gaps = 34/301 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEE---ILGYKTNIK 60
+L + + Y + A + M +++ + +
Sbjct: 213 LLVGAIVIIGGFAGYRAINQPAGTITIAGKLGGEPEILINMYKDLIQADNPKMDVQLKPN 272
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPY------------------LEEGSIKL 102
F++L+ +D++ + L+ + ++ ++ L
Sbjct: 273 FGGTTFIFKALQGGQVDVYPEFTGTVLQSLVKVKGSISHDKQTAYKQAKTLIKQQHNLDL 332
Query: 103 VAENLQGAKYMLAVNDVGFA-LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINN 161
+ Y LAV +++ D+ + ++ A + + +
Sbjct: 333 LEPMKYENTYGLAVRQADAKRYHLQTTSDLLRQSAQMTAGF--DPDFYKLSDGYPGLKKA 390
Query: 162 NKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
+ K +E+S N V ++ P ++ L + F
Sbjct: 391 YGLNFKNIVQMESSLR------YEALANKQIDVTDAYTTDPQLKQDHLVTLAD--DKHFF 442
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+V L K P I++ L + K + EM + + V RT L
Sbjct: 443 PPYQGAPLVNDKTLQKYPGIAKSLNKLSGKITNQDMIEMNYQVTVQHKKAAQVARTYLVK 502
Query: 280 H 280
H
Sbjct: 503 H 503
>gi|254037721|ref|ZP_04871779.1| high-affinity glycine betaine [Escherichia sp. 1_1_43]
gi|226839345|gb|EEH71366.1| high-affinity glycine betaine [Escherichia sp. 1_1_43]
Length = 344
Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 40/320 (12%), Positives = 93/320 (29%), Gaps = 36/320 (11%)
Query: 4 ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKL 61
+ A + ++A D V + T+ T + LE LGY
Sbjct: 20 LFATAFATLISTQTFAADLPGKGITVNPVQSTITEETFQTLLVRRALE-KLGYTVNKPSE 78
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V + SL + W P + + + GA ++
Sbjct: 79 VDYNVGYTSLASGDATFTAVNWTPLHDNMYEAAGGDKKFYREGVFVNGAAQGYLIDKKTA 138
Query: 122 ALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ + + A + G PG I + + +
Sbjct: 139 DQYKITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGWGCEGAINHQLAAYELT-HTVTHN 197
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEEI---------- 218
+ + A + + P + +W P+ ++++ ++ +L
Sbjct: 198 QGNYAAMMADTISRYKEGKPVFYYTWTPYWVSNELKPGKDVVWLQVPFSALPGDKNADTK 257
Query: 219 ------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
GF ++++ V + +K P ++L ++ VA N ++ + K +
Sbjct: 258 LPNGANYGFPVSTMHIVANKAWAEKNPAAAKLFAIMQLPVADINAQNAIMHDGKASEGDI 317
Query: 273 ---GRTMLRTHPDLLKNWLI 289
++ H W+
Sbjct: 318 QGHVDGWIKAHQQQFDGWVN 337
>gi|18309540|ref|NP_561474.1| glycine betaine/carnitine/choline ABC transporter [Clostridium
perfringens str. 13]
gi|18144217|dbj|BAB80264.1| probable glycine betaine/carnitine/choline ABC transporter
[Clostridium perfringens str. 13]
Length = 517
Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 33/286 (11%), Positives = 87/286 (30%), Gaps = 31/286 (10%)
Query: 13 TFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPVTFRS 70
F + + V +T+ M + +++ + + L V F +
Sbjct: 234 LFMGISSFISSRKDKVVIGSKNFTEQLILGNMYADLVQAKTDLQVEKKLNLGGTSVAFGA 293
Query: 71 LKNKGIDIFMGYWYPSLEKFIAP----------------YLEEGSIKLVAENLQGAKYML 114
L+ +D+++ Y L + +E + ++ Y +
Sbjct: 294 LEKGDVDMYVDYTGTLLVNVMKENNIDNSVDYYNSIKENMNKEHGLTVMEPLGFNNTYNI 353
Query: 115 AVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
A++ I + D++KY E ++ + N K + ++
Sbjct: 354 AISKELADKYKINTISDLSKYSNEFVLSPT--IEFQNRQDGLVGLKNYYGMDFKNVKSLD 411
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
S N ++ + ++ L ++ S +V +
Sbjct: 412 GSLR------YSALSNGESQAIDAFSTDGLLKKFDLKTLEDDKKFFVN--YSAVPIVNNK 463
Query: 234 YLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
L+K P + +L ++ K + ++ + + + V + L
Sbjct: 464 TLEKYPQLKDVLNSLSGKINEEKMIDLNYEVDVLGKSPEEVAKAFL 509
>gi|15894753|ref|NP_348102.1| proline/glycine betaine ABC transport system, periplasmic component
[Clostridium acetobutylicum ATCC 824]
gi|15024419|gb|AAK79442.1|AE007658_12 Proline/glycine betaine ABC transport system, periplasmic component
[Clostridium acetobutylicum ATCC 824]
gi|325508891|gb|ADZ20527.1| Proline/glycine betaine ABC transport system, periplasmic component
[Clostridium acetobutylicum EA 2018]
Length = 303
Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 46/303 (15%), Positives = 97/303 (32%), Gaps = 36/303 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDA-------DSCTPVRFADTGWTDIAATTAMTSVILEEIL 53
+ +I+ L + A D +R +T+ + ++ L+
Sbjct: 5 IKRIMVTALAIVFAVSLTACAGKTTKSGEDKSGTIRVGSKDFTENLIIGEVYTLALKNA- 63
Query: 54 GYKTNIKLL-AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP----------------YLE 96
GY+ A V S+ N ID++ Y L + Y +
Sbjct: 64 GYRVERVSNIAGSVIHTSIVNNQIDLYPEYTGTGLLSVLKKKPLTDPEKVYNTVKNDYKK 123
Query: 97 EGSIKLVAENLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRI 155
+ I + + L + GI + D+ K+ EL G ++ I
Sbjct: 124 QFKITWLNYSKANDGQGLVIRTDIAKKLGITTISDLQKHASELRFASQG--EFDQREDGI 181
Query: 156 LDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG 215
+ ++S++ + + +NN V ++ + +
Sbjct: 182 PALTKVYGEFKW-----KSSKIYDNALKYQVLKNNEADVAPAYTTEGQLVNTK-EFTLLK 235
Query: 216 EEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVG 273
++ + ++ VVR + L P+I+ +L I K ++ + NK+D V
Sbjct: 236 DDKQVWPPYNIAPVVRDNVLKAHPDIANILNKISSKLDTKTVTKLNSRVDVNKEDYAKVA 295
Query: 274 RTM 276
R
Sbjct: 296 REF 298
>gi|116872855|ref|YP_849636.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Listeria welshimeri
serovar 6b str. SLCC5334]
gi|116741733|emb|CAK20857.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Listeria welshimeri
serovar 6b str. SLCC5334]
Length = 504
Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 37/299 (12%), Positives = 91/299 (30%), Gaps = 34/299 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
++ + LT I A + A + M +++E+ K N+K
Sbjct: 212 TISAGILLTAAIIVVPYFASDKKEITIAGKLGAEPEILINMYKLVIEDETDLKVNVKPNM 271
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP-----------------YLEEGSIKLVA 104
F +LK+ IDI+ + LE F+ ++ + +
Sbjct: 272 GKTSFVFNALKSGDIDIYPEFTGTVLETFLKENAKTHDPEKVYNQARDGLAKDFDMTFLK 331
Query: 105 ENLQGAKYMLAV-NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK 163
Y LAV + ++ D+ ++ D + K
Sbjct: 332 PMKYNNTYALAVSPEFAKENNLEKISDLGPLADQVK---------AGFTLEFKDRSDGYK 382
Query: 164 FSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
+ L ++ ++ ++ + ++ + + L +++
Sbjct: 383 GIQDKYGLTFSNLKTMEPKLRYNAIKSGDINLLDAYSTDSELAQYKLKVLEDDQQLF--P 440
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++ + LDK P + + L + K + ++ + N + V + L+
Sbjct: 441 PYQGAPLMLTKTLDKYPELKKPLNKLAGKITDDEMRKLNYEVNVNGKSAYTVAKDYLQD 499
>gi|126665098|ref|ZP_01736081.1| glycine betaine transporter subunit [Marinobacter sp. ELB17]
gi|126630468|gb|EBA01083.1| glycine betaine transporter subunit [Marinobacter sp. ELB17]
Length = 332
Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 43/327 (13%), Positives = 87/327 (26%), Gaps = 40/327 (12%)
Query: 1 MYKI---LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M K L ++ S+ V + ++ T + S L + LG+
Sbjct: 1 MKKAGQGLLAVALASSLSVQANDTPGEGVTVIPVKSSIAEVTFQTLLISRALTD-LGFNV 59
Query: 58 N-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
I+ L P ++ N +WYP F + GA +
Sbjct: 60 EKIRELEYPAAHVAIANGDGTFIADHWYPMHTDFYEKAGGGDKLFRSNVYSGGALSGYLI 119
Query: 117 NDVGFALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
+ + + A + G G Q I ++
Sbjct: 120 DKKTADEYSITNIAQLKDPEIAKLFDTNGNGKADLTGCPKGWGCEQIIEHHMDAYGLRDT 179
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI--------- 218
+ A + P ++ SW P+ +++ + E+
Sbjct: 180 -VDHNQGPHSALMASTIARFNKGEPVLYYSWVPYWVSAVMKPSKDVVWMEVPFSSLPGEG 238
Query: 219 -------------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNN 265
GF + V + D P L + + S + + N
Sbjct: 239 GNEVNTKLPDGSNYGFRVNTQRIVANKTFTDNNPAAKALFQAMNISGEHISAQNLAMRNG 298
Query: 266 KQDRQFVGR---TMLRTHPDLLKNWLI 289
+ + + R + + D+ +WL
Sbjct: 299 QDTDEDIARHTDQWIEANQDIYNSWLK 325
>gi|154687504|ref|YP_001422665.1| OpuBC [Bacillus amyloliquefaciens FZB42]
gi|154353355|gb|ABS75434.1| OpuBC [Bacillus amyloliquefaciens FZB42]
Length = 305
Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 38/301 (12%), Positives = 85/301 (28%), Gaps = 28/301 (9%)
Query: 2 YKILAVCLFLTTFSISYAR---DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
++LA+ + A S ++ T+ +M ++E G KT
Sbjct: 7 KRLLAMACIGMLLLGGCSLPGLSAASEDTIKIGAQSMTESEIIASMLGQMIEHHSGLKTT 66
Query: 59 IK--LLAVPVTFRSLKNKGIDIFMGYWY---------------PSLEKFIAPYLEEGSIK 101
+ L + V +SL N IDI + P + +
Sbjct: 67 VIKNLGSNAVQQQSLINGDIDIAATRYTGDALTGTLRMEPEKDPDKALRLVQREFQNRYD 126
Query: 102 LVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINN 161
+ + G G + ++ KKE +G++ +
Sbjct: 127 MKWFDSYGFDNTYVFTVSGQLARKYHLESVSDVKKEASHLKFGVDNYWMKLRGNGYQDFM 186
Query: 162 NKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
N + + E + + ++ + L++ + L + F
Sbjct: 187 NTYGMSF----EGTYPMQIGLVYDALKSRKMDIALAYSTDGRIIAYGLKTLKD--DKRFF 240
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
VV L + P + ++ + + +M + ++ V + L
Sbjct: 241 PPYDCSPVVPDQVLKEHPELEGVINQMIGAIDTKMMQKMNYEVDGRLKEPSVVAKEYLEK 300
Query: 280 H 280
H
Sbjct: 301 H 301
>gi|237729638|ref|ZP_04560119.1| glycine betaine-binding periplasmic protein [Citrobacter sp. 30_2]
gi|226908244|gb|EEH94162.1| glycine betaine-binding periplasmic protein [Citrobacter sp. 30_2]
Length = 331
Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 41/320 (12%), Positives = 89/320 (27%), Gaps = 36/320 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKLL 62
I L + S A V+ + ++ + T + + LE LGY +
Sbjct: 7 IATAFATLVSTSTFAADLPGKGITVQPIQSTISEESFQTQLVARALE-KLGYTVNKTSEV 65
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
V + S+ + W P + A + + GA ++
Sbjct: 66 DYNVGYTSIASGDATFTAVNWQPLHDDMYAAAGGDKKFYREGVFVTGAAQGYLIDKKTAE 125
Query: 123 LGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+ I + A + G PG I +
Sbjct: 126 QYKITNIAQLKDPKIAKIFDTNGDGKADMMGCSPGWGCEAVINHQNKAFDLEKT-VEVSH 184
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI--------------- 218
+ A + + P ++ +W P+ ++ + ++
Sbjct: 185 GNYAAMMADTITRFKEGKPILYYTWTPYWVSDVMKPGKDVVWLQVPFSSLPGEQKDIDTK 244
Query: 219 ------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
GF +++ V + +K P ++L +K +A N ++ + K V
Sbjct: 245 LPNGANYGFPVNTMHIVANKAWAEKNPAAAKLFAIMKLPLADINAQNAMMHDGKASEADV 304
Query: 273 ---GRTMLRTHPDLLKNWLI 289
++ H W+
Sbjct: 305 QGHVDGWIKAHQQQFDGWVN 324
>gi|121609206|ref|YP_997013.1| glycine betaine ABC transporter substrate-binding protein
[Verminephrobacter eiseniae EF01-2]
gi|121553846|gb|ABM57995.1| Substrate-binding region of ABC-type glycine betaine transport
system [Verminephrobacter eiseniae EF01-2]
Length = 299
Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 46/301 (15%), Positives = 95/301 (31%), Gaps = 29/301 (9%)
Query: 1 MYKILAVCLFLTTFSISYA--RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK-T 57
M L F T + A S P+ +T+ T +T+ +LE G++
Sbjct: 1 MKNPLLARAFALTCVLLTAFWSTPSSAAPIVVGGKNFTEQQLMTEITTQLLEAK-GFEIV 59
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKF---------------IAPYLEEGSIKL 102
+ V ++ +N ID++ Y SL + + +
Sbjct: 60 KKDGMGSAVLRQAQENGQIDLYWEYTGTSLITYNKVSERFSPEDTYRKVKELDAAKGLVW 119
Query: 103 VAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGN-QRILDMIN 160
+ + Y LA+N GI S D+A+ + A + + +
Sbjct: 120 LNPSRANNTYSLAMNADEANKQGIVSISDLAQAIRSGKALRFACNSEFYARPDGLRPLEK 179
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISG 220
+ F +L + ++ + L + N L +
Sbjct: 180 SYGFDFARAKLKRMD----TGLTYQALKDRQVDIALVFATDGRVPAFNFVILKDDKGFF- 234
Query: 221 FGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
++ VVR LD P+++ +L + K + + +++ + V R L+
Sbjct: 235 -PAYALTPVVRKVVLDANPSLAPILNALSEKLDAPTMARLNASVDVSRKSLREVARDFLK 293
Query: 279 T 279
Sbjct: 294 Q 294
>gi|283835586|ref|ZP_06355327.1| glycine betaine-binding periplasmic protein [Citrobacter youngae
ATCC 29220]
gi|291068797|gb|EFE06906.1| glycine betaine-binding periplasmic protein [Citrobacter youngae
ATCC 29220]
Length = 331
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 43/326 (13%), Positives = 91/326 (27%), Gaps = 39/326 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDAD---SCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M L T + A AD V+ + ++ + T + + LE LGY
Sbjct: 1 MRHTLLFATAFATLVSTSAFAADLPGKGITVQPIQSTISEESFQTQLVARALE-KLGYTV 59
Query: 58 -NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ V + S+ + W P + A + + GA +
Sbjct: 60 NKTSEVDYNVGYTSIASGDATFTAVNWQPLHDDMYAAAGGDKKFYREGVFVTGAAQGYLI 119
Query: 117 NDVGFALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
+ + I + A + G PG I
Sbjct: 120 DKKTAEQYKITNIAQLKDPKIAKIFDTNGDGKADMMGCSPGWGCEAVINHQNKAFDLEKT 179
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI--------- 218
+ + A + + P ++ +W P+ ++ + ++
Sbjct: 180 -VEVSHGNYAAMMADTITRFKEGKPILYYTWTPYWVSDVMKPGKDVVWLQVPFSSLPGEQ 238
Query: 219 ------------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNK 266
GF +++ V + +K P ++L +K +A N ++ + K
Sbjct: 239 KDIDTKLPNGANYGFPVNTMHIVANKAWAEKNPAAAKLFAIMKLPLADINAQNAMMHDGK 298
Query: 267 QDRQFV---GRTMLRTHPDLLKNWLI 289
V ++ H W+
Sbjct: 299 ASEADVQGHVDGWIKAHQQQFDGWVN 324
>gi|169343007|ref|ZP_02864035.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Clostridium
perfringens C str. JGS1495]
gi|182625055|ref|ZP_02952832.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Clostridium
perfringens D str. JGS1721]
gi|169298916|gb|EDS80990.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Clostridium
perfringens C str. JGS1495]
gi|177909675|gb|EDT72101.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Clostridium
perfringens D str. JGS1721]
Length = 517
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 32/286 (11%), Positives = 87/286 (30%), Gaps = 31/286 (10%)
Query: 13 TFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPVTFRS 70
F + + V +T+ M + +++ + + L V F +
Sbjct: 234 LFMGISSFISSRKDKVVIGSKNFTEQLILGNMYADLVQAKTDLQVEKKLNLGGTSVAFGA 293
Query: 71 LKNKGIDIFMGYWYPSLEKFIAP----------------YLEEGSIKLVAENLQGAKYML 114
L+ +D+++ Y L + +E + ++ Y +
Sbjct: 294 LEKGDVDMYVDYTGTLLVNVMKENNIDNSVDYYNSIKENMNKEHGLTVMEPLGFNNTYNI 353
Query: 115 AVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
A++ I + D++KY + ++ + N K + ++
Sbjct: 354 AISKELADKYKINTISDLSKYSNDFVLSPT--IEFQNRQDGLVGLKNYYGMDFKNVKSLD 411
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
S N ++ + ++ L ++ S +V +
Sbjct: 412 GSLR------YSALSNGESQAIDAFSTDGLLKKFDLKTLEDDKKFFVN--YSAVPIVNNK 463
Query: 234 YLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
L+K P + +L ++ K + ++ + + + V + L
Sbjct: 464 TLEKYPQLKDVLNSLSGKINEEKMIDLNYEVDVLGKSPEEVAKAFL 509
>gi|331702031|ref|YP_004398990.1| glycine betaine ABC transporter periplasmic protein [Lactobacillus
buchneri NRRL B-30929]
gi|329129374|gb|AEB73927.1| ABC-type glycine betaine transport, periplasmic subunit
[Lactobacillus buchneri NRRL B-30929]
Length = 300
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 33/162 (20%), Positives = 63/162 (38%), Gaps = 2/162 (1%)
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
K++ I GIE G + ++L +S A S + + +N+ P V
Sbjct: 39 KQINYTITGIEAGAGIMSSTQKAMKAYGLDKGKWQLQTSSTAAMTSTLGKAIKNHQPIVV 98
Query: 196 LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
W PH + + N+ +L + + G E ++T+VR P +L +
Sbjct: 99 TGWTPHWMFTKYNLKFLKDPKNVYGKAE-DIHTIVRKGLKKDKPQAYEMLNRFNWRPKQM 157
Query: 256 NEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQ 297
++M + NN +D ++ + + W G+ GQ
Sbjct: 158 ADVMLKV-NNGEDPHKAANDWIKANQKQVDTWTKGIAHVHGQ 198
Score = 65.2 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 2/97 (2%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWY 84
++ W A+T + + +L LGYK I+ + V + S+ D + W
Sbjct: 197 GQSIKLTYVAWDSEIASTNVVANVL-RSLGYKVEIQAMEVQPLWASIATNAADGMVSAWL 255
Query: 85 PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
P+ + +G + NL GAK LAV
Sbjct: 256 PTTQGLYYK-DYKGKFDDLGVNLHGAKVGLAVPTYMK 291
>gi|315109039|gb|EFT81015.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL030PA2]
Length = 339
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 50/275 (18%), Positives = 98/275 (35%), Gaps = 12/275 (4%)
Query: 17 SYARDADSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKG 75
+ + AD + W + AT + +LE+ GYK IK + L
Sbjct: 63 TTSMKADGKKDITIGAFNGWDESFATAGIMKNVLEKD-GYKVTIKGFDAGPGYAGLVAGD 121
Query: 76 IDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK 135
ID+ W P + ++ + AK +AVN A ++ D+
Sbjct: 122 IDLLTDGWLPVTHADYVKRYGD-KMENLGCWYDNAKLTIAVNKDSKA---RTIGDLKTMG 177
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
E +YGIE G + D K+ LK +S A +Q+++
Sbjct: 178 DEYDNTLYGIEAGAGLTKATKDSA-IPKYGLKNLNFKISSTPAMLAQLKKSTSAGQGIAV 236
Query: 196 LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
W PH + L ++ G E +Y+ R + P +++L++N+ F
Sbjct: 237 TLWRPHWAYGAFPVRDLKDPKKAMGNAE-VIYSFGRPGFEQDFPKVAQLVRNMAFDDNKL 295
Query: 256 NEMMKLI----LNNKQDRQFVGRTMLRTHPDLLKN 286
+++ + ++++ + + D +
Sbjct: 296 SDLEDTMFSADKYGGKNQEKAVEEWISRNNDWVDK 330
>gi|325496271|gb|EGC94130.1| Glycine betaine-binding periplasmic protein precursor [Escherichia
fergusonii ECD227]
Length = 346
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 41/320 (12%), Positives = 93/320 (29%), Gaps = 36/320 (11%)
Query: 4 ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKL 61
+ A + ++A D V + T+ T + S LE LGY
Sbjct: 22 LFATAFATLISTQTFAADLPGKGITVNPVQSTITEETFQTLLVSRALE-KLGYTVNKPSE 80
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V + SL + W P + + + GA ++
Sbjct: 81 VDYNVGYTSLASGDATFTAVNWTPLHDNMYEAAGGDKKFYREGVFVNGAAQGYLIDKKTA 140
Query: 122 ALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ + + A + G PG I + +
Sbjct: 141 DQYKITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGWGCEGAINHQLAAYDLT-NTVTHN 199
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEEI---------- 218
+ + A + + P + +W P+ ++++ ++ +L
Sbjct: 200 QGNYAAMMADTISRYKEGKPVFYYTWTPYWVSNELKPGKDVVWLQVPFSALPGDKNADTK 259
Query: 219 ------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
GF ++++ V + +K P ++L ++ VA N ++ + K +
Sbjct: 260 LPNGANYGFPVSTMHIVANKAWAEKNPAAAKLFAIMQLPVADINAQNAIMHDGKASEGDI 319
Query: 273 ---GRTMLRTHPDLLKNWLI 289
++ H W+
Sbjct: 320 QGHVDGWIKAHQQQFDGWVN 339
>gi|313808312|gb|EFS46783.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL087PA2]
gi|313818070|gb|EFS55784.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL046PA2]
gi|313820929|gb|EFS58643.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL036PA1]
gi|313824001|gb|EFS61715.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL036PA2]
gi|313827065|gb|EFS64779.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL063PA1]
gi|314926956|gb|EFS90787.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL036PA3]
gi|314961776|gb|EFT05877.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL002PA2]
gi|314979688|gb|EFT23782.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL072PA2]
gi|314988242|gb|EFT32333.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL005PA2]
gi|314990328|gb|EFT34419.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL005PA3]
gi|315083765|gb|EFT55741.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL027PA2]
gi|315087405|gb|EFT59381.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL002PA3]
gi|315089822|gb|EFT61798.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL072PA1]
gi|327326515|gb|EGE68303.1| periplasmic binding protein of proline/glycine betaine transport
system [Propionibacterium acnes HL096PA3]
gi|327449665|gb|EGE96319.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL013PA2]
gi|328757298|gb|EGF70914.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL020PA1]
Length = 352
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 55/276 (19%), Positives = 98/276 (35%), Gaps = 11/276 (3%)
Query: 19 ARDADSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGID 77
A D+ T + W + AT + +L++ GY IK V +++ ID
Sbjct: 79 AMKPDTNTSLTIGAFNGWDESWATAGLIKQVLKKD-GYTVTIKGFDAGVGYQATAGGDID 137
Query: 78 IFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKE 137
I W P + ++ + AK +AVN A I + K
Sbjct: 138 IITDSWLPVTQAGYIRKYG-PKLENLGCWYDNAKLTIAVNKNSPAHSIAD---LKKTGSA 193
Query: 138 LGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLS 197
G IY IEPG E + I + L L +S A +Q+++ +
Sbjct: 194 YGNVIYSIEPGAEMTKTIAHQTL-PMYGLSNITLKTSSTPAMLAQLQKATKAGNNVAVTL 252
Query: 198 WEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENE 257
W PH + L + E +Y+ R + P ++L++N+ A +
Sbjct: 253 WRPHWAYDAYPVRDLDDPKNAISNAE-LIYSFGRPGFEKDHPKAAQLIRNLAIDDAHLSS 311
Query: 258 MMKLILNN---KQDRQFVGRTMLRTHPDLLKNWLIG 290
+ L+++ + + D + +WL G
Sbjct: 312 LEHLMVDTTKRGGQEDTAISRWMADNSDWVHDWLAG 347
>gi|229826647|ref|ZP_04452716.1| hypothetical protein GCWU000182_02023 [Abiotrophia defectiva ATCC
49176]
gi|229789517|gb|EEP25631.1| hypothetical protein GCWU000182_02023 [Abiotrophia defectiva ATCC
49176]
Length = 515
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 40/298 (13%), Positives = 89/298 (29%), Gaps = 33/298 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
I V + + FS+ R++ V A ++ +T+ +++ NI
Sbjct: 220 IAGVLIVVVFFSVIGIRESHKTDTVNIASKPTSEGYILAEITAALIKSDTNLNVNITHGV 279
Query: 62 -LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP---------------YLEEGSIKLVAE 105
++ D++ Y S + + Y +E +
Sbjct: 280 GGGTSNIHPAIVKGDFDMYPEYTGTSWQIVLKRNEPYTDDDFDTLNKAYQDEYKLTWKGM 339
Query: 106 NLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNK 163
Y L + IK++ D+ KY K+ +G E E +
Sbjct: 340 FGFNNTYSLGIRRDLAEKYKIKTFSDLVKYAKDFT---FGAEYDFFEREDGFNALSKVYN 396
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+ + + + + V + +D I L + +
Sbjct: 397 LNF------KKNSDMDNGLKYQALFDKKLDVMTVFTTDGQLNDKRIVVLEDDLNF--YPK 448
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
VVR + L+K P ++ +L + ++ + K++ + V + L
Sbjct: 449 YMAGMVVREEVLNKHPELNTVLDKLNNLIDEGTMAKLNNRVETGKENPKDVAISFLEE 506
>gi|260889808|ref|ZP_05901071.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Leptotrichia
hofstadii F0254]
gi|260860414|gb|EEX74914.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Leptotrichia
hofstadii F0254]
Length = 506
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 38/305 (12%), Positives = 96/305 (31%), Gaps = 27/305 (8%)
Query: 1 MYKI------LAVCLFLTTFSISYARD-----ADSCTPVRFADTGWTDIAATTAMTSVIL 49
+ K+ + V F++ F I +A + + + T+ M +++
Sbjct: 199 LKKLENKNWKVIVISFMSLFIIFFAGNLVMNKQSKRDKIVISGKLGTEPEILINMYKLLI 258
Query: 50 EEILGYKTNIK--LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL---EEGSIKLVA 104
E+ + +K F +LK+ +DI+ + + F+ + + A
Sbjct: 259 EDEMNVDVELKSGFGTTSFNFNALKSGDVDIYPEFTGTVVFTFLNETPVSNIKEQVYEQA 318
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYG------IEPGNEGNQRILDM 158
+N KY + + + K+ E + + +D
Sbjct: 319 KNGILKKYDMVLLKPMAYNNTYAVGVTQKFASENNITKISDLARVKDKAKVGFTREFVDR 378
Query: 159 INNNKFSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
+ K K + +S ++ ++ V ++ I L +
Sbjct: 379 EDGYKGMKKLYNFEFSSVKEFEPKLRYVAVQSGDINVIDAYSTDSELEQYKIIVLEDDKN 438
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
+ +++ + L K P + ++L + K + +M + N + V +
Sbjct: 439 LF--PPYQGAPLMKRETLKKYPKLEQILNKLHNKVTDDEMRKMNFEVGVNGKKAYDVAKE 496
Query: 276 MLRTH 280
L +
Sbjct: 497 YLIKN 501
>gi|168212557|ref|ZP_02638182.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Clostridium
perfringens CPE str. F4969]
gi|170715892|gb|EDT28074.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Clostridium
perfringens CPE str. F4969]
Length = 517
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 32/286 (11%), Positives = 86/286 (30%), Gaps = 31/286 (10%)
Query: 13 TFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPVTFRS 70
F + + V +T+ M + +++ + + L V F +
Sbjct: 234 LFMGISSVISSRKDKVVIGSKNFTEQLILGNMYADLVQAKTDLQVEKKLNLGGTSVAFGA 293
Query: 71 LKNKGIDIFMGYWYPSLEKFIAP----------------YLEEGSIKLVAENLQGAKYML 114
L+ +D+++ Y L + +E + ++ Y +
Sbjct: 294 LEKGDVDMYVDYTGTLLVNVMKENNIDNSVDYYNSIKENMNKEHGLTVMEPLGFNNTYNI 353
Query: 115 AVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
A++ I + D+A Y + ++ + N K + ++
Sbjct: 354 AISKELADKYKINTISDLANYSNDFVLSPT--IEFQNRQDGLVGLKNYYGMDFKNVKSLD 411
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
S N ++ + ++ L ++ S +V +
Sbjct: 412 GSLR------YSALSNGESQAIDAFSTDGLLKKFDLKTLEDDKKFFVN--YSAVPIVNNK 463
Query: 234 YLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
L+K P + +L ++ K + ++ + + + V + L
Sbjct: 464 TLEKYPQLKEILNSLSGKINEEKMIDLNYEVDVLGKSPEEVAKDFL 509
>gi|302539018|ref|ZP_07291360.1| glycine betaine-binding lipoprotein [Streptomyces sp. C]
gi|302447913|gb|EFL19729.1| glycine betaine-binding lipoprotein [Streptomyces sp. C]
Length = 324
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 39/289 (13%), Positives = 93/289 (32%), Gaps = 17/289 (5%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKG 75
S D + V + W A A+ +LE LGY+ + + + +L
Sbjct: 33 ASPFSDTEGARTVTLSVQSWVGAQADVAVAQYLLEHELGYRVDTVQIDEVPAWDALSQGR 92
Query: 76 IDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA--LGIKSYQDIAK 133
+D + W E+ +G++ + V + ++++ K
Sbjct: 93 VDAILEDWG-HPEQEERYIDGKGTVVPGGDLGVTGHIGWFVPAYFAEQHPDVTDWKNLDK 151
Query: 134 YKKELGAKIYGIEPG---NEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
Y EL G + + D L + SE A +QI++ +
Sbjct: 152 YAAELRTAESGGKGQLLDGSPSYVTHDKALVKNLGLDLQVVFAGSEAAQITQIKQFAKER 211
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEE-----------ISGFGEASVYTVVRSDYLDKCP 239
P + +EP + + + + + + + + +
Sbjct: 212 KPFLTYWYEPQWLFEKVPMTEVKLPGHEKGCDADPEKVACAYPHTPLRKFLNARFAKDGG 271
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+ + LK +++ ++N++ +I K + ++ + + WL
Sbjct: 272 DAAAFLKRFRWTKDMQNDVALMIAEEKLAPREAAARWVKENRTTWQAWL 320
>gi|222151710|ref|YP_002560866.1| glycine betaine/carnitine/choline ABC-type transporter,
substrate-binding protein [Macrococcus caseolyticus
JCSC5402]
gi|222120835|dbj|BAH18170.1| glycine betaine/carnitine/choline ABC-type transporter,
substrate-binding protein [Macrococcus caseolyticus
JCSC5402]
Length = 299
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 32/283 (11%), Positives = 79/283 (27%), Gaps = 25/283 (8%)
Query: 17 SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNK 74
S + V+ A T+ M +++E+ + + + V +++
Sbjct: 15 SGCGQNNQKETVKIASVYTTESQILANMIKLLVEKETDHPVELINNLGSGTVVHQAMMRG 74
Query: 75 GIDIFMGYWY---------------PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
++ + P + + E + G + A
Sbjct: 75 DANVSSARYTGTDLTGPLGKAPITDPDKARSVVVKGFEERFDQHYFDSYGFENTYAFMVT 134
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+ + ++ KK G++ + +
Sbjct: 135 KETAKKYNLKTVSDMKKVAQNLRAGVDSSWMKRKGDGFEAFKKTYGFDFKDTKP----MQ 190
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+ V L + ++ L ++ F V ++ L K P
Sbjct: 191 IGLVYEAVNAGKMDVVLGYTTDGRIQSYDLVVLKD--DLQFFPPYDANPVATNELLKKDP 248
Query: 240 NISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
I +LL+++K S ++ + NN ++ V L++H
Sbjct: 249 KIKKLLESMKDQISTEQMQKLNYEVDNNLKEPAVVAEAYLKSH 291
>gi|328555089|gb|AEB25581.1| choline ABC transporter (binding protein) [Bacillus
amyloliquefaciens TA208]
gi|328913444|gb|AEB65040.1| choline ABC transporter (binding protein) [Bacillus
amyloliquefaciens LL3]
Length = 305
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 36/302 (11%), Positives = 81/302 (26%), Gaps = 29/302 (9%)
Query: 2 YKILAVCLFLTTFSISYAR----DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
K L + + A S ++ T+ +M ++E G KT
Sbjct: 6 KKRLLAFACIGMLLLGGCSLPGLSAASEDTIKIGAQSMTESEIIASMLGQMIEHHSGLKT 65
Query: 58 NIK--LLAVPVTFRSLKNKGIDIFMGYWY---------------PSLEKFIAPYLEEGSI 100
+ L + V +SL+N IDI + P +
Sbjct: 66 TVIKNLGSNAVQQQSLQNGDIDIAATRYTGDALTGTLRMEPEKDPDKALRLVQREFHSRY 125
Query: 101 KLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN 160
+ + G + ++ KKE +G++ +
Sbjct: 126 DMKWFDSYGFDNTYVFTVSKQLARKYHLETVSDVKKEASHLKFGVDNYWMKLRGNGYQDF 185
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISG 220
+ + E + + ++ + L++ + L +
Sbjct: 186 MKTYGMAF----EGTYPMQIGLVYDALKSRKMDIALAYSTDGRIIAYGLKTLKD--DKRF 239
Query: 221 FGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
F VV L + P + ++ + + +M + ++ V + L
Sbjct: 240 FPPYDCSPVVPDRVLKEHPELEGVINQMIGAIDTKMMQKMNYEVDGQLKEPSIVAKEYLE 299
Query: 279 TH 280
H
Sbjct: 300 KH 301
>gi|156932791|ref|YP_001436707.1| glycine betaine transporter periplasmic subunit [Cronobacter
sakazakii ATCC BAA-894]
gi|156531045|gb|ABU75871.1| hypothetical protein ESA_00587 [Cronobacter sakazakii ATCC BAA-894]
Length = 331
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 39/317 (12%), Positives = 86/317 (27%), Gaps = 36/317 (11%)
Query: 7 VCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKLLAVP 65
L T S A V+ + ++ + T + S LE LGY +
Sbjct: 10 AFATLVTTSTFAADLPGKGITVQPVQSTISEESFQTRLVSRALE-KLGYTVNKTSEVDYN 68
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
V + S+ + W P + A + + GA ++
Sbjct: 69 VGYTSIASGDATFTAVNWQPLHDDMYAAAGGDKKFYREGTYVTGAAQGYLIDRKTAEKYH 128
Query: 126 KSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ + + A + G PG I + +
Sbjct: 129 ITNIAQLKDPKLAKLFDSNGDGKADMMGCTPGWGCEAVINHQNTAYGL-QNTVTVNHGNY 187
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPIN---------------------SDLNIHYLPGG 215
A + + P ++ +W P+ ++ +I
Sbjct: 188 AAMMADTIARYKEGKPVLYYTWTPYWVSDVLKPGKDVVWLQVPFSSLPGEQKDIDTKLSN 247
Query: 216 EEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV--- 272
GF +++ V + +K P ++L +K + N ++ + + +
Sbjct: 248 GNNFGFPVNTMHIVANKAWAEKNPAAAKLFAVMKLPITDINAQNAMMHSGRASEADIESH 307
Query: 273 GRTMLRTHPDLLKNWLI 289
++ H W+
Sbjct: 308 VDGWIKAHQQQFDGWIK 324
>gi|323698734|ref|ZP_08110646.1| Substrate-binding region of ABC-type glycine betaine transport
system [Desulfovibrio sp. ND132]
gi|323458666|gb|EGB14531.1| Substrate-binding region of ABC-type glycine betaine transport
system [Desulfovibrio desulfuricans ND132]
Length = 342
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 43/339 (12%), Positives = 92/339 (27%), Gaps = 47/339 (13%)
Query: 1 MYKILAVCLFLTTFSISYARD--ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M L + + ++A D V+ A W A+ LE LGY
Sbjct: 4 MKLTLTALFAVLIATGAFAMDMQPGKGVTVQPARATWNTGFFQEALVRKGLET-LGYTVK 62
Query: 59 -IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+ L+ P+ ++S+ +D + W+P + + ++ + K+ G V+
Sbjct: 63 KPRDLSNPIFYKSVTLGDVDYWTNGWFPMHDAQLPKNFDQKARKIGFVAKAGGMQGYLVS 122
Query: 118 DVGFALGI---------KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
+ A + PG + I +
Sbjct: 123 KRDADKYGIKSLDDFKRPEVMKAFDSNGDGKADLTACPPGWGCEKVIAHHMKVYGLDDYI 182
Query: 169 FRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE----------- 217
+ + E + + ++ P F +W P+
Sbjct: 183 NPVKASYEAGMAAALGE-YKSGKPVFFYTWTPNWTVFKFKPGKDVVWINVPEIKPTEAQA 241
Query: 218 -------------------ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEM 258
+GF + + V +L+K P +R L+ +A +
Sbjct: 242 ANADRMTVSGVEGAVSDPLKAGFVVSDIRAVANKQFLEKNPAAARFLELFTLPLADISAQ 301
Query: 259 MKLILNNK---QDRQFVGRTMLRTHPDLLKNWLIGVTTF 294
+ + +D + + + WL
Sbjct: 302 NTRMNQGEKSDKDIEKHAEEWIANNKATWDGWLQAAREA 340
>gi|312862789|ref|ZP_07723029.1| ABC transporter, substrate-binding protein, QAT family
[Streptococcus vestibularis F0396]
gi|311101649|gb|EFQ59852.1| ABC transporter, substrate-binding protein, QAT family
[Streptococcus vestibularis F0396]
Length = 506
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 32/303 (10%), Positives = 86/303 (28%), Gaps = 39/303 (12%)
Query: 3 KILAVCLFLTTFSISYARDAD-----SCTPVRFADTGWTDIAATTAMTSVILEEILG--Y 55
+ + + + + + A + M +++EE
Sbjct: 207 RTIFAAFAVMVIGLGVSYTPSLLSKPEKENLVIAGKLGPEPEIIANMYKILIEENTDMTV 266
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------E 97
+++LK I I+ + E + P + +
Sbjct: 267 TVKPNFGKTTFLYQALKKWDIAIYPEFTGTVTESLLKPAPQVDHDPEAVYKAARDGIKKQ 326
Query: 98 GSIKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
++ L+ Y +AV G+K+ D+ K + +L A N+
Sbjct: 327 DNLALLKPMAYQNTYAVAVPKKIAQEYGLKTISDLKKVEGQLKAGFTL--EFNDREDGNK 384
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ L+ + + + ++ + ++ + ++ L
Sbjct: 385 GLQKVYGLHLQVSTMEP-------ALRYQAIQSGEIQITDAYSTDAELARYDLVALED-- 435
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F +++ +L K P + +L + K + ++M + + V
Sbjct: 436 DKQLFPPYQGAPLMKEAFLKKHPELEGILNKLAGKITEKQMSQMNYQVGVEGKSADQVAH 495
Query: 275 TML 277
L
Sbjct: 496 GFL 498
>gi|152971537|ref|YP_001336646.1| glycine betaine transporter periplasmic subunit [Klebsiella
pneumoniae subsp. pneumoniae MGH 78578]
gi|150956386|gb|ABR78416.1| glycine/betaine/proline transport protein (ABC superfamily,
peri_bind) [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
Length = 327
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 43/309 (13%), Positives = 90/309 (29%), Gaps = 36/309 (11%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRSLKN 73
S A V+ A + ++ + T + S LE LGY + V + S+
Sbjct: 14 SAFAADLPGKGITVKPAQSTISEESFQTLLVSRALE-KLGYTVEKPSEVDYNVAYTSIAA 72
Query: 74 KGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD--- 130
W P + A + + GA ++ + D
Sbjct: 73 GDTTFIATNWQPLHDDMYAAAGGDNKFYRKGVYVSGAAQGYLIDKKTAEQYHITSIDQLK 132
Query: 131 ------IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
+ + A + G PG I I+ S + + A +
Sbjct: 133 DPQIAKLFDTNNDGKADLTGCTPGWGCEAVINHQIDAYGLSKT-VTHNQGNYAAMMADTI 191
Query: 185 RDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEE-----------------ISGFGE 223
+ P ++ +W P+ ++ ++ +L GF
Sbjct: 192 ARYKEGKPVLYYTWTPYWVSDVLKPGKDVVWLQVPFSSLPGEQQNIDTKLANGANYGFPV 251
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV---GRTMLRTH 280
+++ V + +K P + L +K +A N ++ + ++ H
Sbjct: 252 NTMHIVANKAWAEKNPAAATLFSVMKLPIADINAENAMMHEGHASEADINGHVDGWIKAH 311
Query: 281 PDLLKNWLI 289
L +W+
Sbjct: 312 QPLFDSWVK 320
>gi|16800529|ref|NP_470797.1| hypothetical protein lin1461 [Listeria innocua Clip11262]
gi|16413934|emb|CAC96692.1| lin1461 [Listeria innocua Clip11262]
Length = 504
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 40/298 (13%), Positives = 88/298 (29%), Gaps = 32/298 (10%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
++ + LT I A + A + M +++E+ K N+K
Sbjct: 212 TISAGILLTAAIIVVPYFASDKKEITIAGKLGAEPEILINMYKLVIEDETDLKVNVKPNM 271
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP-----------------YLEEGSIKLVA 104
F +LK+ IDI+ + LE F+ ++ + +
Sbjct: 272 GKTSFVFNALKSGDIDIYPEFTGTVLETFLKENAKTHDPEKVYTQARDGLAKDFDMTYLK 331
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKF 164
Y LAV+ K +K + D + K
Sbjct: 332 PMEYNNTYALAVSPEFAKEN--------KLEKISDLNPVADQVKAGFTLEFKDRSDGYKG 383
Query: 165 SLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+ L + ++ ++ + ++ + + L E++
Sbjct: 384 IQDKYGLTFQNLKTMEPKLRYNAIKSGDINLLDAYSTDSELAQYKLKVLEDDEQLF--PP 441
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++ + LDK P + + L + K + +M + N + V + L+
Sbjct: 442 YQGAPLMLTKTLDKYPELKKPLNKLAGKITDDEMRKMNYEVNVNGKSAYTVAKDYLQD 499
>gi|47093962|ref|ZP_00231697.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Listeria
monocytogenes str. 4b H7858]
gi|47017661|gb|EAL08459.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Listeria
monocytogenes str. 4b H7858]
Length = 249
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 29/147 (19%), Positives = 68/147 (46%), Gaps = 2/147 (1%)
Query: 152 NQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHY 211
+ I + ++L +S A S +++ ++ P V W PH + + ++ +
Sbjct: 1 MLATQNAIKDYHLDDDNWQLQTSSTAAMTSTLQKAMKDKRPIVVTGWTPHWMFTKFDLKF 60
Query: 212 LPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQF 271
L + + G E +++T+VR + P+ ++L N ++ +E+M + N+ D +
Sbjct: 61 LDDPKNVYGNAE-NIHTIVRKGLKEDKPSAYQVLDNFFWTAEDMSEVMLEV-NDGVDPEE 118
Query: 272 VGRTMLRTHPDLLKNWLIGVTTFDGQD 298
+ ++ +P+ + W GV DG +
Sbjct: 119 AAKKWIKNNPEKVAKWTDGVEKVDGDE 145
Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYW 83
++ W A+T + + L++ +GYK I+ + + + S+ D + W
Sbjct: 142 DGDEIKLTYVAWDSEIASTNVVAEALKQ-VGYKPTIQAMEIQPMWASVATDAADGMVAAW 200
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
P+ +G + + NL+GAK LAV
Sbjct: 201 LPNTSGIYYK-DYKGKFEDLGPNLKGAKIGLAVPKYM 236
>gi|313623801|gb|EFR93932.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Listeria innocua FSL
J1-023]
Length = 504
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 40/298 (13%), Positives = 88/298 (29%), Gaps = 32/298 (10%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
++ + LT I A + A + M +++E+ K N+K
Sbjct: 212 TISAGILLTAAIIVVPYFASDKKEITIAGKLGAEPEILINMYKLVIEDETDLKVNVKPNM 271
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP-----------------YLEEGSIKLVA 104
F +LK+ IDI+ + LE F+ ++ + +
Sbjct: 272 GKTSFVFNALKSGDIDIYPEFTGTVLETFLKENAKTHDPEKVYTQARDGLAKDFDMTYLK 331
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKF 164
Y LAV+ K +K + D + K
Sbjct: 332 PMEYNNTYALAVSPEFAKEN--------KLEKISDLNPVADQVKAGFTLEFKDRSDGYKG 383
Query: 165 SLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+ L + ++ ++ + ++ + + L E++
Sbjct: 384 IQDKYGLTFQNLKTMEPKLRYNAIKSGDINLLDAYSTDSELAQYKLKVLEDDEQLF--PP 441
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++ + LDK P + + L + K + +M + N + V + L+
Sbjct: 442 YQGAPLMLTKTLDKYPELKKPLNKLAGKITDDEMRKMNYEVNVNGKSAYTVAKDYLQD 499
>gi|313608809|gb|EFR84610.1| BilEB [Listeria monocytogenes FSL F2-208]
Length = 504
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 39/299 (13%), Positives = 91/299 (30%), Gaps = 34/299 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
++ + LT I A + A + M +++E+ K N+K
Sbjct: 212 TISAGILLTAAIIVVPYFASDKKEITIAGXXXXEPEILINMYKLVIEDETDLKVNVKPNM 271
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP-----------------YLEEGSIKLVA 104
F +LK+ IDI+ + LE F+ ++ + +
Sbjct: 272 GKTSFVFNALKSGDIDIYPEFTGTVLETFLKENAKTHDPEEVYTQARDGLAKDFDMTYLK 331
Query: 105 ENLQGAKYMLAV-NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK 163
Y LAV + ++ D+ ++ D + K
Sbjct: 332 PMKYNNTYALAVSPEFAKENNLEKISDLGPVSDQVK---------AGFTLEFKDRSDGYK 382
Query: 164 FSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
+ L ++ ++ ++ + ++ + + L E++
Sbjct: 383 GIQDKYGLTFSNLKTMEPKLRYNAIKSGDINLLDAYSTDSELAQYKLKVLEDDEQLF--P 440
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++ + LDK P + + L + K + +M + N + V + L+
Sbjct: 441 PYQGAPLMLTKTLDKYPELKKPLNKLAGKITDDEMRKMNYEVNVNGKSAYTVAKEYLQD 499
>gi|73662302|ref|YP_301083.1| glycine/betaine ABC transporter [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
gi|72494817|dbj|BAE18138.1| periplasmic glycine betaine choline-binding protein of an ABC-type
transport system osmoprotectant binding protein
[Staphylococcus saprophyticus subsp. saprophyticus ATCC
15305]
Length = 308
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 33/305 (10%), Positives = 78/305 (25%), Gaps = 31/305 (10%)
Query: 1 MYKILAVCLFLTTFSISY----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
+ + + + LF T F S S + VR + ++ M ++E K
Sbjct: 4 LKRFVILVLFSTIFLASCELPGLGGGQSKSTVRISALATSESQIMAYMLKELMEHDTDGK 63
Query: 57 TN----IKLLAVPVTFRSLKNKGIDIFMGYWY---------------PSLEKFIAPYLEE 97
L + + +L N D+ + + + L
Sbjct: 64 VKGSIINNLGSATIQHNALMNGDADVSSTRYTGTDLVGALEQKPITDSTKAMHVTKKLFN 123
Query: 98 GSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILD 157
N G + A + ++ +K G +
Sbjct: 124 QKFDQTFFNSYGFENTFAFMVTKETAKKYNLHTVSDLEKVKDKVNVGTDTTWIKRGGDGY 183
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
+ + + +N V L + + ++ L +
Sbjct: 184 APFQEHYGFAFNSIKP----MQIGLVYDALKNQKLDVALGYTTDGRIAAYDLVVLKDDKN 239
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
V + L + P + + +K + + S ++ ++ V +
Sbjct: 240 FF--PPYDASAVAPNKLLAQQPELKKAIKKLEGQISTEQMQKLNYEADGQGKEPAIVAKE 297
Query: 276 MLRTH 280
L+ H
Sbjct: 298 FLKQH 302
>gi|302555890|ref|ZP_07308232.1| ABC transport system glycine betaine binding protein [Streptomyces
viridochromogenes DSM 40736]
gi|302473508|gb|EFL36601.1| ABC transport system glycine betaine binding protein [Streptomyces
viridochromogenes DSM 40736]
Length = 320
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 39/315 (12%), Positives = 87/315 (27%), Gaps = 34/315 (10%)
Query: 6 AVCLFLTTFSISYARDADSCT-------------PVRFADTGWTDIAATTAMTSVILEEI 52
A L + +++ A A W A A+ + + E
Sbjct: 9 AAGLAVLGLTLTACGGAKVGEDSAGGSGGKGKCGTFNLAINPWVGYEANAAVLAYVAEHD 68
Query: 53 LGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKY 112
LG K K L + ++ +D + W + V G K
Sbjct: 69 LGCKVEQKDLKEEIAWQGFGTGEVDAVVENWG---HDDLKKKYITQQKTAVEAGPTGNKG 125
Query: 113 --MLAVNDVGFA--LGIKSYQDIAKYKKELGAKIYGIEPG---NEGNQRILDMINNNKFS 165
V I ++++ Y + G + + + D
Sbjct: 126 LIGWYVPPWLAKAHPDILDWKNLNTYASKFKTSESGGKGQLLDGDPSYVTNDEALVKNLK 185
Query: 166 LKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE-------- 217
L + SE A R ++N + +EP S++ + +
Sbjct: 186 LDFKVVYAGSETALIQAYRNAEKNKEWVIGYFYEPQWFMSEVPLKKVSLPAYKTGCDADA 245
Query: 218 ---ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGR 274
+ + +V + + ++K ++ +N + I +K + +
Sbjct: 246 EKVACDYPVYKLDKIVSAKFAKSGSPAYDMVKKFHWTNDDQNTVATYIAVDKMAPEAAAK 305
Query: 275 TMLRTHPDLLKNWLI 289
+ + D + W+
Sbjct: 306 KWVEANRDKVDAWIK 320
>gi|120610181|ref|YP_969859.1| glycine betaine transporter periplasmic subunit [Acidovorax
citrulli AAC00-1]
gi|120588645|gb|ABM32085.1| Substrate-binding region of ABC-type glycine betaine transport
system [Acidovorax citrulli AAC00-1]
Length = 347
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 41/294 (13%), Positives = 86/294 (29%), Gaps = 36/294 (12%)
Query: 36 TDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPY 94
+ T + S L + LGY+ IK + ++ N +W P F
Sbjct: 55 AEETFQTLLVSRAL-QKLGYEVQPIKEIEYATAHLAVANGDATFIADHWDPLHADFYKNA 113
Query: 95 LEEGSIKLVAENLQGAKYMLAVNDVGFALGIKS---------YQDIAKYKKELGAKIYGI 145
+ + A ++ + + + A + G
Sbjct: 114 GGDAKLWRKGAYSPNAVQGYLIDRKTAEQYQITHIDQLKDPKLAKLFDANGDGRADLTGC 173
Query: 146 EPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINS 205
PG I + + S + ++ S A + + P ++ +W P+ ++
Sbjct: 174 NPGWGCEAVIEHQLKDFGLS-RTVTHVQGSYAALMADTIARYKQGKPILYYTWTPYWVSG 232
Query: 206 D----LNIHYLPGGE-----------------EISGFGEASVYTVVRSDYLDKCPNISRL 244
++ +L + GF V + +K P ++L
Sbjct: 233 VLRPGRDVVWLQVPRSSLPGEQAGIDTKLPDGKNYGFVPNVQKIVANKAFTEKNPAAAKL 292
Query: 245 LKNIKFSVALENEMMKLI---LNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFD 295
+ ++ VA N + N + D + +R H W+ T D
Sbjct: 293 FEVMQLPVADINAQNLAMQKGQNRQADIERHVDGWIRAHQKTFDGWIAQATAAD 346
>gi|229819721|ref|YP_002881247.1| Substrate-binding region of ABC-type glycine betaine transport
system [Beutenbergia cavernae DSM 12333]
gi|229565634|gb|ACQ79485.1| Substrate-binding region of ABC-type glycine betaine transport
system [Beutenbergia cavernae DSM 12333]
Length = 314
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 48/269 (17%), Positives = 96/269 (35%), Gaps = 10/269 (3%)
Query: 20 RDADSCTPVRFADT-GWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDI 78
A T V GW + A + + + ILE+ GY+ + + F SL G D+
Sbjct: 41 TPAGDETSVSIGIPAGWDEGIAVSHLWAAILEDE-GYEVETEDADIGPIFTSLAGGGYDL 99
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL 138
W P E + + +GA+ +AVN+ A ++ +A E
Sbjct: 100 LFDGWLPLTHAEYFETYGE-DLTDLGVWYEGAELTIAVNEDSPAQSLED---LAGMADEY 155
Query: 139 GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
G ++ GI+ G D + + L+ + +S A +++R W
Sbjct: 156 GNRLVGIDAGAGLTTTTQDAV-IPTYGLEDMEFVISSTPAMLAELRSATDAGENIAVTLW 214
Query: 199 EPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEM 258
PH + + L E G E+ ++T +D+ ++ P ++ + + +
Sbjct: 215 RPHWAYDEFPVRNLEDPEGTLGESES-IHTFGSADFEERYPTLTTWIGAFTMTDEQLFSL 273
Query: 259 MKLI--LNNKQDRQFVGRTMLRTHPDLLK 285
++ + L +P +
Sbjct: 274 ENMMFNSDEYASEADAVDAWLEENPTFVD 302
>gi|330808806|ref|YP_004353268.1| glycine betaine ABC transporter periplasmic protein [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|327376914|gb|AEA68264.1| putative glycine betaine ABC transporter, periplasmic component
[Pseudomonas brassicacearum subsp. brassicacearum
NFM421]
Length = 287
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 54/287 (18%), Positives = 106/287 (36%), Gaps = 11/287 (3%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+K+L L L+ + + P+R W D T + + +E++ G+ + +
Sbjct: 7 FKVLMGGLALSLLQVLPVSAEQA--PIRIGWINWADAEITAKLAAKAIEDVTGHPVKLVM 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ + F++L NK +D W P K ++ + G K A+ D
Sbjct: 65 ADLGIQFQALANKSVDFIPMVWLPGAHKTFWDKYSS-QVEDLGTVYDG-KIGWAIPDSIP 122
Query: 122 ALGIKSYQDIAKY--KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
A + S +D+ K + G +I GN + I ++L+ +SE
Sbjct: 123 ASEVSSIEDLNKPGIAAKFGNRILSAGAGNGQYKLSEKAIAEYGLKD--YKLVASSEAGM 180
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
S++ RDQ + ++ +W PH + + + YL + I G G ++ V R + P
Sbjct: 181 LSELARDQSRDKWSIINAWNPHWMFAKWKLRYLVDSKNIFG-GTEHIHVVSRLGFKADEP 239
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKN 286
I+ L++ + M + V +
Sbjct: 240 KIATFLEHYTLPLNDLETM--QMQAKDSSVDEVVNAYYLKNRTRFAA 284
>gi|289434710|ref|YP_003464582.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Listeria seeligeri
serovar 1/2b str. SLCC3954]
gi|289170954|emb|CBH27496.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Listeria seeligeri
serovar 1/2b str. SLCC3954]
gi|313633269|gb|EFS00133.1| glycine betaine/carnitine/choline-binding protein [Listeria
seeligeri FSL N1-067]
gi|313637857|gb|EFS03188.1| glycine betaine/carnitine/choline-binding protein [Listeria
seeligeri FSL S4-171]
Length = 308
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 29/278 (10%), Positives = 71/278 (25%), Gaps = 25/278 (8%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGIDIF 79
S +R T+ + + ++E G K I + V +++ N +DI
Sbjct: 30 GGSKDTIRIGAMATTESQIVSNILKELIEHDTGLKVEIVNNLGSTIVQHQAMLNGDVDIT 89
Query: 80 MGYWY---------------PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
+ P E + G
Sbjct: 90 ATRYTGTDLVGPLGEEAIKDPDKALAAVQKGFEERFHQTWFDSYGFANTYVFMVRQDTAK 149
Query: 125 IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
+ ++ +K G++ + + + ++ ++ I
Sbjct: 150 KYNLSKVSDMRKVEDQLTAGVDNSWMEREGDGYKAFSEAYDIEFKKIFP----MQIGLIY 205
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
+N V L + N+ L ++ + + L K P +
Sbjct: 206 TALKNKQMDVALGYSTDGRIPTYNLKLLEDDKKFF--PPYDASALATDEILKKHPELKTT 263
Query: 245 LKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ + K S ++ ++ V + L +
Sbjct: 264 INKLKGKISTEEMQKLNYAADGELKEPSIVAKEFLEKN 301
>gi|262043922|ref|ZP_06017010.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Klebsiella pneumoniae
subsp. rhinoscleromatis ATCC 13884]
gi|259038776|gb|EEW39959.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Klebsiella pneumoniae
subsp. rhinoscleromatis ATCC 13884]
Length = 327
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 43/309 (13%), Positives = 90/309 (29%), Gaps = 36/309 (11%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRSLKN 73
S A V+ A + ++ + T + S LE LGY + V + S+
Sbjct: 14 SAFAADLPGKGITVKPAQSTISEESFQTLLVSRALE-KLGYTVEKPSEVDYNVAYTSIAA 72
Query: 74 KGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD--- 130
W P + A + + GA ++ + D
Sbjct: 73 GDTTFIATNWQPLHDDMYAAAGGDNKFYRKGVYVSGAAQGYLIDKKTAEQYHITSIDQLK 132
Query: 131 ------IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
+ + A + G PG I I+ S + + A +
Sbjct: 133 DPQIAKLFDTNNDGKADLTGCTPGWGCEAVINHQIDAYGLSKT-VTHNQGNYAAMMADTI 191
Query: 185 RDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEE-----------------ISGFGE 223
+ P ++ +W P+ ++ ++ +L GF
Sbjct: 192 ARYKEGKPVLYYTWTPYWVSDVLKPGKDVVWLQVPFSSLPGEQKNIDTKLANGANYGFPV 251
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV---GRTMLRTH 280
+++ V + +K P + L +K +A N ++ + ++ H
Sbjct: 252 NTMHIVANKAWAEKNPAAATLFSVMKLPIADINAENAMMHEGHASEADINGHVDGWIKAH 311
Query: 281 PDLLKNWLI 289
L +W+
Sbjct: 312 QPLFDSWVK 320
>gi|91772530|ref|YP_565222.1| ABC glycine betaine transporter, substrate-binding subunit
[Methanococcoides burtonii DSM 6242]
gi|91711545|gb|ABE51472.1| ABC ProU-like glycine betaine transporter, substrate-binding
subunit [Methanococcoides burtonii DSM 6242]
Length = 308
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 38/300 (12%), Positives = 88/300 (29%), Gaps = 33/300 (11%)
Query: 3 KILAVCLFLTTFSISYARDADSCTP------VRFADTGWTDIAATTAMTSVILEEILGYK 56
KIL + +S + S V + + M ++LEE GY+
Sbjct: 4 KILIATFVVLAVILSGCTEPASDDTEVEKGEVVIGSKLFQESYILAHMAGIMLEEA-GYE 62
Query: 57 TNIKLL--AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQ------ 108
++K V + LK ID+++ Y + + + E V
Sbjct: 63 VDVKEGLGGTFVNYEGLKQGSIDVYVEYTGTAYSQILEEPALEVWDPEVVYQKAEEGLKE 122
Query: 109 ---------GAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI 159
G + A+ + I+ + I G +P + L I
Sbjct: 123 DGVLVVSNLGFEDAYALAVKKQWAEENNVVAISDLENHASDLIIGTDPEFALREDGLPRI 182
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
++ + + + + + V ++ N ++ L
Sbjct: 183 SSLYGFEFKEV-----KPTVATLMYEAIKLDEVDVISAYTTDTRNELFDLTILEDDMNAL 237
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
V+ +++ + P+ L+ + + + +K++ + + R L
Sbjct: 238 --PPYDAIVVMSAEFAEANPDAVTALEKLNGQIDTETMRGLNYQFDVDKREAEDIARDFL 295
>gi|157371971|ref|YP_001479960.1| glycine betaine transporter periplasmic subunit [Serratia
proteamaculans 568]
gi|157323735|gb|ABV42832.1| Substrate-binding region of ABC-type glycine betaine transport
system [Serratia proteamaculans 568]
Length = 333
Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats.
Identities = 36/319 (11%), Positives = 88/319 (27%), Gaps = 36/319 (11%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLA 63
+A+ +++ ++S A V+ + ++ T + S LE LGY + +
Sbjct: 9 VALTTLISSQAVSAADLPGKGISVQPVQSTISEETFQTLLVSKALE-KLGYDVKDTREVD 67
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
V + S+ + W P + + GA ++
Sbjct: 68 YNVAYTSIASGDATFLAVNWDPLHADQYKAAGGDAKFYREGVYVNGAAQGYLIDKKTADK 127
Query: 124 GIKSYQD---------IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
+ + + + A + G PG I I +
Sbjct: 128 YHITNVEQLKDPKIAKLFDTNGDGKADLTGCTPGWGCEAAINHHIKAYGLDKT-VEHNQG 186
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEP----HPINSDLNIHYLPGGEEI------------ 218
+ A + + P ++ +W P + ++ +L
Sbjct: 187 NYAAMIADTITRYKEGKPVLYYTWTPYWVSDVLVPGRDVVWLQVPFSAMPGEMKDMDTKL 246
Query: 219 -----SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV- 272
GF ++ + + P ++L +K ++ N + + +
Sbjct: 247 PNGANYGFPVNTMRIAANKKWAEANPAAAKLFAIMKLPISDVNAQNLRMHEGQASEADIQ 306
Query: 273 --GRTMLRTHPDLLKNWLI 289
++ H W+
Sbjct: 307 GHVNGWIKAHQATFDGWVK 325
>gi|312602691|ref|YP_004022536.1| glycine betaine-binding protein [Burkholderia rhizoxinica HKI 454]
gi|312170005|emb|CBW77017.1| Glycine betaine-binding protein [Burkholderia rhizoxinica HKI 454]
Length = 300
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 44/304 (14%), Positives = 92/304 (30%), Gaps = 31/304 (10%)
Query: 1 MYKILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M ++L + S + A + +T+ +TS L GY
Sbjct: 1 MTRLLKCVIAWLLASTALAGVIPAHAATLVVGGKNFTEQLLLAEITSQYLRSR-GYTVES 59
Query: 60 KLL-AVPVTFRSLKNKGIDIFMGYWYPSLEKF---------------IAPYLEEGSIKLV 103
+ + +L+N+ +DI Y +L + + + + +
Sbjct: 60 RSGLGSVLMRSALENRQLDIVWDYTGTALIVYNRIHEKLDPQTAYRRVRDLDKPRGLVWL 119
Query: 104 AENLQGAKYMLAVNDVGFA-LGIKSYQDIAKYKKELGAK----IYGIEPGNEGNQRILDM 158
+ Y LA+ GI + +A ++ + + +
Sbjct: 120 KPSALNNTYALAMPSERAKRDGIHTISQLAAKIQQDDPRKRHWFAMDAEFANRPDGLRPL 179
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
L+ + + + NN L + I L
Sbjct: 180 QALYDLRLRRSDIKQMDSG----LVYTALHNNQAMFGLVYTTDGRIKGFGITVLDDDLGF 235
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
+ VVR D LD+ P +++ L + + + + +EM K + +++ V
Sbjct: 236 F--PAYNATPVVRRDVLDQHPELAKQLDALSAQINSEVMSEMNKRVDIDEESISAVAADF 293
Query: 277 LRTH 280
LRTH
Sbjct: 294 LRTH 297
>gi|251788500|ref|YP_003003221.1| glycine betaine transporter periplasmic subunit [Dickeya zeae
Ech1591]
gi|247537121|gb|ACT05742.1| Substrate-binding region of ABC-type glycine betaine transport
system [Dickeya zeae Ech1591]
Length = 332
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 41/325 (12%), Positives = 92/325 (28%), Gaps = 36/325 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI-KLL 62
LA+ L+T + V+ + ++ T + S LE LGY + +
Sbjct: 8 TLALTTVLSTGLFAADDLPGKGITVKPVQSTLSEETFQTLLVSKALE-KLGYTVDTPSEV 66
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
V + S+ N W P + + + + GA ++
Sbjct: 67 DYNVGYTSIANGDATFSAVNWQPLHDDMYQAAGGDAAFYRQGVYVSGAAQGYLIDKKTAD 126
Query: 123 LGIKSYQD---------IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+ D + + A + G PG + I I + +
Sbjct: 127 KYHITRLDQLKDPKLAALFDTNGDGKADLTGCNPGWGCDGVINHQIQAYGLN-HTVNHNQ 185
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHP----INSDLNIHYLPGGEE------------ 217
+ A + + ++ +W P+ + ++ +L
Sbjct: 186 GNYAALIADTITRYKQGKSILYFTWTPYWVSDVLVPGRDVVWLQVPFSSLPGKQKNTDTQ 245
Query: 218 -----ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
GF + + + +K P ++L +K +A N + + ++ +
Sbjct: 246 LPNGANYGFPVNKMRIIANKAWAEKNPAAAKLFAVMKLPLADINAQNLRMHQGEASQEDI 305
Query: 273 GRT---MLRTHPDLLKNWLIGVTTF 294
R + H W+
Sbjct: 306 ERHVNGWVNAHQAQFNRWIDSARAA 330
>gi|83644217|ref|YP_432652.1| glycine betaine transporter periplasmic subunit [Hahella chejuensis
KCTC 2396]
gi|83632260|gb|ABC28227.1| ABC-type proline/glycine betaine transport system, periplasmic
components [Hahella chejuensis KCTC 2396]
Length = 334
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 38/324 (11%), Positives = 86/324 (26%), Gaps = 37/324 (11%)
Query: 1 MYKILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN- 58
+ A + ++A + V+ + + T + LE+ LGY
Sbjct: 6 IKSCFAALVMGAASFTAHAENMPGKGVEVQPLKSSIAEETFQTLLVMKALEQ-LGYDVKP 64
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
IK + +L N +W P F + + GA ++
Sbjct: 65 IKEVEYATGHVALANGDGAFMADHWDPLHVDFFTKAGGDEKLYREGVYSSGALQGYLIDK 124
Query: 119 VGFALGIKSYQD---------IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
+ + A + G PG + I ++
Sbjct: 125 ATADKHGIKNIKQLQDSKLAKLFDADGDGKADLAGCNPGWGCEKVIEHHLDAYGLRKT-V 183
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPHP----INSDLNIHYLPGGEE-------- 217
+ S A + + P ++ +W P+ + ++ +L
Sbjct: 184 AHNQGSYSAIIADTIARYKQGQPVLYYTWTPYWVSGVMVPGKDVVWLQVPFSSLPGERKD 243
Query: 218 ---------ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQD 268
GF + V ++ P ++L +K S + + + +
Sbjct: 244 IDTSLPDGSNYGFQANNQRIVANLEFAKSNPAAAKLFSIMKISANDISAQNLRMRDGEDS 303
Query: 269 RQFV---GRTMLRTHPDLLKNWLI 289
+ ++ + WL
Sbjct: 304 AAEIERHADGWIKANQKKFDGWLE 327
>gi|116872859|ref|YP_849640.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Listeria welshimeri
serovar 6b str. SLCC5334]
gi|116741737|emb|CAK20861.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Listeria welshimeri
serovar 6b str. SLCC5334]
Length = 308
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 30/278 (10%), Positives = 72/278 (25%), Gaps = 25/278 (8%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGIDIF 79
S +R T+ + + ++E G K I + V +++ N +DI
Sbjct: 30 GSSKDTIRIGAMATTESQIVSNILKQLIEHDTGLKVEIVNNLGSTIVQHQAMLNGDVDIT 89
Query: 80 MGYWY---------------PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
+ P E + G
Sbjct: 90 ATRYTGTDLVGPLGEEAIKDPEKALAAVKKGFEERFHQTWFDSYGFANTYVFMVRQDTAK 149
Query: 125 IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
+ ++ +K G++ + + + ++ ++ I
Sbjct: 150 KYNLNTVSDMRKVENELTAGVDNSWMEREGDGYKAFSKAYDIEFKKIFP----MQIGLIY 205
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
+NN V L + N+ L ++ + + L K P +
Sbjct: 206 TALKNNQMDVALGYSTDGRIPTYNLKLLKDDKKFF--PPYDASALATDEILKKHPELKTT 263
Query: 245 LKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ + K S ++ ++ V + L +
Sbjct: 264 INKLKGKISTEEMQKLNYQSDGELKEPSIVAQEFLEKN 301
>gi|307155278|ref|YP_003890662.1| Substrate-binding region of ABC-type glycine betaine transporter
[Cyanothece sp. PCC 7822]
gi|306985506|gb|ADN17387.1| Substrate-binding region of ABC-type glycine betaine transport
system [Cyanothece sp. PCC 7822]
Length = 507
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 30/295 (10%), Positives = 86/295 (29%), Gaps = 34/295 (11%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLL 62
+ + F++++ + + +T+ + + +E G K + + L
Sbjct: 223 ILTFFLVGFFALAFRQTPP---TIIIGSKNFTEQFILGELLAQQIESHTGLKVDRRLNLG 279
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIA----------------PYLEEGSIKLVAEN 106
+ ++K I ++ Y + + Y ++ +++++
Sbjct: 280 GTFICHEAVKAGKIAGYVEYTGTAFTAVLKQKPISDPSSVYEQVKQQYNDQFNLEVMPPL 339
Query: 107 LQGAKYMLAVN-DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFS 165
Y + + + L I++ + AKY + E + +
Sbjct: 340 GFNNTYAMIIRGEDAKRLQIRTLSEAAKYTPQWTGGF--GYEFLERDDGYPGLAKTYGLK 397
Query: 166 LKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEAS 225
L I + + + + + L + L + F
Sbjct: 398 LAKIE------QMELGLIYQALKEKQVNIVAGNSTDGLITVLKLVILED--DKQYFPPYE 449
Query: 226 VYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLR 278
+ L++ P++ + + S +M + N + + V R L
Sbjct: 450 AVPIFNQAILNQYPDLRTAINQLAGLISTEDIQKMNYEVDNQSRPVEEVVRQFLE 504
>gi|218438210|ref|YP_002376539.1| substrate-binding region of ABC-type glycine betaine transporter
[Cyanothece sp. PCC 7424]
gi|218170938|gb|ACK69671.1| Substrate-binding region of ABC-type glycine betaine transport
system [Cyanothece sp. PCC 7424]
Length = 512
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 29/282 (10%), Positives = 81/282 (28%), Gaps = 30/282 (10%)
Query: 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPVTFRSLKNKGI 76
++ + V +T+ + + +E + + L + ++K I
Sbjct: 238 SQVSSGGGTVIIGSKNFTEQVILGELLAQEIEAKTNLTVDRRLNLGGTFICHEAVKTGQI 297
Query: 77 DIFMGYWYPSLEKFIAP----------------YLEEGSIKLVAENLQGAKYMLAVNDVG 120
D ++ Y S + Y ++ ++++ Y + +
Sbjct: 298 DGYVEYTGTSYTAILKKNPISDREKVYQQVKQFYGDQLNLEVFPSLGFENTYAIVIRREY 357
Query: 121 FALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+K+ +IAKY A + + + E
Sbjct: 358 AEKYQVKTLSEIAKYTPNWKAGF--GHEFLSRKDGYPGLAKTYGL-----KFAQPPEAME 410
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
I + + + LN+ L + F + + L+K P
Sbjct: 411 LGLIYQAISQKQVDLVAGSSTDGLIPVLNLVILED--DKRYFPPYDAVPIFNKNTLEKYP 468
Query: 240 NISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+ +++ + S ++ + + ++ + V + L+
Sbjct: 469 QLEKVISELGGFISAEEMQQLNYQVDSQAREVEEVVKEFLKA 510
>gi|291485909|dbj|BAI86984.1| glycine betaine/carnitine/choline ABC transporter,
osmoprotectant-binding protein [Bacillus subtilis subsp.
natto BEST195]
Length = 305
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 33/306 (10%), Positives = 78/306 (25%), Gaps = 33/306 (10%)
Query: 1 MYKI--LAVCLFLTTFSISYARDA----DSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
M KI L + + S ++ T+ M + ++E
Sbjct: 3 MTKIKWLGAFALVFVMLLGGCSLPGLGGASDDTIKIGAQSMTESEILANMIAQLIEHDTD 62
Query: 55 YKTNIK--LLAVPVTFRSLKNKGIDIFMGYW---------------YPSLEKFIAPYLEE 97
T + L + V +++ IDI + P I +
Sbjct: 63 LNTALVKNLGSNYVQHQAMLGGDIDISATRYSGTDLTSTLGKEAEKDPKKALNIVQNEFQ 122
Query: 98 GSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILD 157
+ G A + ++ KK G++ +
Sbjct: 123 KRFSYKWFDSYGFDNTYAFTVTKKFAENEHINTVSDLKKNASQYKLGVDNAWLKRKG--- 179
Query: 158 MINNNKFSLKGFRLIEA-SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ K + + + + +N L++ ++ L
Sbjct: 180 --DGYKGFVSTYGFEFGTTYPMQIGLVYDAVKNGKMDAVLAYSTDGRIKAYDLKILKD-- 235
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F V+ L + P + ++ + + E+ + ++ V +
Sbjct: 236 DKRFFPPYDCSPVIPEKVLKEHPELEGVINKLIGQIDTETMQELNYEVDGKLKEPSVVAK 295
Query: 275 TMLRTH 280
L H
Sbjct: 296 EFLEKH 301
>gi|27467421|ref|NP_764058.1| choline transporter [Staphylococcus epidermidis ATCC 12228]
gi|57866321|ref|YP_187980.1| ABC transporter permease [Staphylococcus epidermidis RP62A]
gi|251810154|ref|ZP_04824627.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, membrane protein [Staphylococcus
epidermidis BCM-HMP0060]
gi|282875698|ref|ZP_06284569.1| ABC transporter, substrate-binding protein, QAT family
[Staphylococcus epidermidis SK135]
gi|293368182|ref|ZP_06614811.1| osmoprotectant ABC superfamily ATP binding cassette transporter,
membrane protein [Staphylococcus epidermidis
M23864:W2(grey)]
gi|27314964|gb|AAO04100.1|AE016745_199 choline transporter [Staphylococcus epidermidis ATCC 12228]
gi|57636979|gb|AAW53767.1| ABC transporter, permease protein [Staphylococcus epidermidis
RP62A]
gi|251806325|gb|EES58982.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, membrane protein [Staphylococcus
epidermidis BCM-HMP0060]
gi|281295725|gb|EFA88248.1| ABC transporter, substrate-binding protein, QAT family
[Staphylococcus epidermidis SK135]
gi|291317605|gb|EFE58022.1| osmoprotectant ABC superfamily ATP binding cassette transporter,
membrane protein [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329736733|gb|EGG72998.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Staphylococcus epidermidis
VCU028]
gi|329737931|gb|EGG74155.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Staphylococcus epidermidis
VCU045]
Length = 504
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 43/303 (14%), Positives = 89/303 (29%), Gaps = 35/303 (11%)
Query: 2 YKILAVCLFLTTFSISYAR---DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
K+L + I A + FA ++ + T M +++EE
Sbjct: 207 KKLLISLGTIVIVIIIAIAIPMAAQKGDKITFAGKLGSEPSIITNMYKILIEEDTDDTVE 266
Query: 59 IK--LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP-----------------YLEEGS 99
+K + F +LK+ ID ++ + L + ++
Sbjct: 267 VKDGMGKTSFLFNALKSDEIDGYLEFTGTVLGELTKEDLKSKKENDVYQQAKSSLEKKYD 326
Query: 100 IKLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ ++ Y LAV IK+ D+ K + +L N+ +
Sbjct: 327 MTMLKPMKYNNTYALAVKRDFAKKYQIKTIGDLRKVEDKLKPGFTL--EFNDRPDGYKAV 384
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+L + +E + + ++ N+ L +
Sbjct: 385 KKTYHLNLSNVKTMEPKLR------YTAVKKGDINLIDAYSTDAELKQYNMVVLKD--DQ 436
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F + + YL P + + L + + + EM + K+D V R
Sbjct: 437 HVFPPYQGAPLFKEKYLKDHPEVKKPLNKLANRITDEEMQEMNYKVTVKKEDPYKVAREY 496
Query: 277 LRT 279
L
Sbjct: 497 LEK 499
>gi|289549917|ref|YP_003470821.1| Osmotically activated L-carnitine/choline ABC transporter,
substrate-binding protein OpuCC [Staphylococcus
lugdunensis HKU09-01]
gi|315659454|ref|ZP_07912316.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Staphylococcus lugdunensis
M23590]
gi|289179449|gb|ADC86694.1| Osmotically activated L-carnitine/choline ABC transporter,
substrate-binding protein OpuCC [Staphylococcus
lugdunensis HKU09-01]
gi|315495437|gb|EFU83770.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Staphylococcus lugdunensis
M23590]
Length = 313
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 28/298 (9%), Positives = 79/298 (26%), Gaps = 27/298 (9%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
++ L L+ S+ D +S V+ T ++ + ++E K +
Sbjct: 11 MVLSLLVLSGCSLPGLGDGNSKDDVKITTTETSETKIMGYIEKYMIEHETKGKIKPTIIG 70
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE---------------EGSIKLVA 104
+ + +L+ +++ + + + +
Sbjct: 71 NLGSSIIQHNALQRGDVNMSAVRYTGTELTSVLAAPPTKDTDKAMSESQRLFKKKFNQKY 130
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKF 164
N G + A + ++ KK G++ Q +
Sbjct: 131 YNSFGFENTYAFMVTKEVADKYHLKKVSDLKKYKDELRLGMDTQWMNRQGDGYPAFQKDY 190
Query: 165 SLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEA 224
K +++ + +N V + + + N+ L +
Sbjct: 191 GFKF----DSARPMQIGLVYDALKNKKLDVAVGYSTDGRIAAYNLKVLKDDRKFF--PPY 244
Query: 225 SVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ + P I + LK + + ++ ++ + + L H
Sbjct: 245 DGSPLATEKLIKDHPEIDKALKKLEGTVTTKEMQKLNYEADGQGKEPAVIAKEFLEKH 302
>gi|28378309|ref|NP_785201.1| glycine betaine/carnitine/choline ABC transporter, substrate
binding protein [Lactobacillus plantarum WCFS1]
gi|300767245|ref|ZP_07077157.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, substrate binding protein
[Lactobacillus plantarum subsp. plantarum ATCC 14917]
gi|308180459|ref|YP_003924587.1| glycine betaine/carnitine/choline ABC transporter, substrate
binding protein [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|28271144|emb|CAD64049.1| glycine betaine/carnitine/choline ABC transporter, substrate
binding protein [Lactobacillus plantarum WCFS1]
gi|300495064|gb|EFK30220.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, substrate binding protein
[Lactobacillus plantarum subsp. plantarum ATCC 14917]
gi|308045950|gb|ADN98493.1| glycine betaine/carnitine/choline ABC transporter, substrate
binding protein [Lactobacillus plantarum subsp.
plantarum ST-III]
Length = 311
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 39/310 (12%), Positives = 79/310 (25%), Gaps = 37/310 (11%)
Query: 1 MYKI----------LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILE 50
M KI +A L L S +R A T+ M +++
Sbjct: 1 MKKIKKWLLGVFATVASALLLAGCGFPGLS-GTSSDTIRIASQNTTEQQIMAYMIQDMIK 59
Query: 51 EILGYKTNIKL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEG---------- 98
T I + V+F +LKN DI + + I +
Sbjct: 60 HYSNLNTTIINNLGSGTVSFNALKNDQADISAIRYTGTDLTTILGEKMDRSNIKSIDQKV 119
Query: 99 ------SIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGN 152
++ G A ++ KK G++
Sbjct: 120 RSQFNSKYQMTYFPSYGFADTYAFMVTKATAKKYHLNTVSDMKKVASKLTVGLDQIWTER 179
Query: 153 QRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYL 212
+ + + + + + + L + ++ L
Sbjct: 180 KGDGYPAFKKLYGFQFGK----TYPMQIGLVYDALESGKMDAILGYSTDGRIGSYDLKIL 235
Query: 213 PGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQ 270
+ + V + L P + +L + K S+ + + NN + +
Sbjct: 236 KDDKNFF--PPYNASAVATNKILKAHPKLKPILNRLNGKISLKTMQNLNYQVDNNLVEPE 293
Query: 271 FVGRTMLRTH 280
V + L H
Sbjct: 294 VVAKQFLEKH 303
>gi|313829589|gb|EFS67303.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL063PA2]
Length = 335
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 49/275 (17%), Positives = 97/275 (35%), Gaps = 12/275 (4%)
Query: 17 SYARDADSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKG 75
+ + AD + W + AT + +LE+ GYK IK + L
Sbjct: 59 TTSMKADGKKDITIGAFNGWDESFATAGIMKNVLEKD-GYKVTIKGFDAGPGYAGLVAGD 117
Query: 76 IDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK 135
ID+ W P + ++ + AK +AVN A ++ D+
Sbjct: 118 IDLLTDGWLPVTHADYVKRYGD-KMENLGCWYDNAKLTIAVNKDSKA---RTIGDLKTMG 173
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
E +YGIE G + D + LK +S A +Q+++
Sbjct: 174 DEYDNTLYGIEAGAGLTKATKDSAIPK-YGLKNLNFKISSTPAMLAQLKKSTSAGQGIAV 232
Query: 196 LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
W PH + L ++ G E +Y+ R + P +++L++N+ F
Sbjct: 233 TLWRPHWAYGAFPVRDLKDPKKAMGNAE-VIYSFGRPGFEQDFPKVAQLVRNMAFDDNKL 291
Query: 256 NEMMKLI----LNNKQDRQFVGRTMLRTHPDLLKN 286
+++ + ++++ + + D +
Sbjct: 292 SDLEDTMFSADKYGGKNQEKAVEEWISRNNDWVDK 326
>gi|282864722|ref|ZP_06273777.1| Substrate-binding region of ABC-type glycine betaine transport
system [Streptomyces sp. ACTE]
gi|282560661|gb|EFB66208.1| Substrate-binding region of ABC-type glycine betaine transport
system [Streptomyces sp. ACTE]
Length = 330
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 41/292 (14%), Positives = 101/292 (34%), Gaps = 20/292 (6%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKG 75
S V + W A A+ S +L++ LGY+ ++ + +L
Sbjct: 41 ASPFAAPADIKTVTLSVQSWVGAQANVAVASKLLQDELGYRVDLVQTDEVPAWDALSQGR 100
Query: 76 IDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKY-MLAVNDVGFA--LGIKSYQDIA 132
+D + W Y+++ + +L + V + ++++
Sbjct: 101 VDAILEDWG--HPDQEKLYVQDKKTIVPGGDLGVTGHIGWYVPKYWADEHPDVTDWKNLD 158
Query: 133 KYKKELGAKIYGIEPG---NEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRN 189
+Y EL G + + D L + SE A +QI++ +
Sbjct: 159 RYADELRTPESGDKGQLMDGSPSYVTNDKALVKNLGLDYKVVFAGSEAAQITQIQQFAKA 218
Query: 190 NIPAVFLSWEPHPINSDLNIHYLPGGEEI------------SGFGEASVYTVVRSDYLDK 237
P + ++P + +++ + + E + + + +D+ +
Sbjct: 219 KKPFLSYWYQPQWLFNEVPMVEVKLPEYTDACGAKAPADIDCAYPTTPLQKYLNADFSRR 278
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+ + L+ +S +NE+ ++I +++ + +PD+ K WL
Sbjct: 279 GKDAAAFLRKFSWSERDQNEVSRMIASDRLTPDEAAERWIARNPDIWKKWLD 330
>gi|238794436|ref|ZP_04638046.1| Osmoprotectant transport protein OusBX [Yersinia intermedia ATCC
29909]
gi|238726231|gb|EEQ17775.1| Osmoprotectant transport protein OusBX [Yersinia intermedia ATCC
29909]
Length = 334
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 38/316 (12%), Positives = 88/316 (27%), Gaps = 34/316 (10%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAV 64
L + +S A V+ + ++ T++ + LE LGY K +
Sbjct: 9 LALTTLISTQLSAAELPGKGITVQPLQSTISEETFQTSLVNKALE-KLGYDVQPTKEVDY 67
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
V + ++ W P + ++G ++
Sbjct: 68 NVAYSTIGAGDATYLAVNWVPLHNDQYNAAGGDAKFYRQGNYIEGLAQGYLIDKKTADKY 127
Query: 125 IKSYQD---------IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
+ + + + A + G PG I I S + +
Sbjct: 128 HITNIEQLKDPKIAKLFDANNDGKADLTGCNPGWGCEAPINHQIKAYGLSDT-VTHNQGN 186
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEP----HPINSDLNIHYLPGGEE-------------- 217
A + + P ++ +W P + ++ +L
Sbjct: 187 YAAMIADTITRYKEGKPILYYTWTPYWVSDVLVPGRDVVWLQVPFSSLPDKTIDTKLSNG 246
Query: 218 -ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI---LNNKQDRQFVG 273
GF + ++ V + + P ++L +K S+ N + ++ D +
Sbjct: 247 ANYGFPPSVMHIVANKKWAEANPAAAKLFSIMKLSINDVNAQNMRMHAGESSDADIERHV 306
Query: 274 RTMLRTHPDLLKNWLI 289
++ H W+
Sbjct: 307 NGWIQAHQATFDGWVK 322
>gi|301026687|ref|ZP_07190098.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 196-1]
gi|331643367|ref|ZP_08344498.1| glycine betaine-binding periplasmic protein [Escherichia coli H736]
gi|299879609|gb|EFI87820.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 196-1]
gi|331036838|gb|EGI09062.1| glycine betaine-binding periplasmic protein [Escherichia coli H736]
Length = 344
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 41/320 (12%), Positives = 94/320 (29%), Gaps = 36/320 (11%)
Query: 4 ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKL 61
+ A + ++A D V + T+ T + S LE LGY
Sbjct: 20 LFATAFATLISTQTFAADLPGKGITVNPVQSTITEETFQTLLVSRALE-KLGYTVNKPSE 78
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V + SL + W P + + + GA ++
Sbjct: 79 VDYNVGYTSLASGDATFTAVNWTPLHDNMYEAAGGDKKFYREGVFVNGAAQGYLIDKKTA 138
Query: 122 ALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ + + A + G PG I + + +
Sbjct: 139 DQYKITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGWGCEGAINHQLAAYELT-NTVTHN 197
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEEI---------- 218
+ + A + + P + +W P+ ++++ ++ +L
Sbjct: 198 QGNYAAMMADTISRYKEGKPVFYYTWTPYWVSNELKPGKDVVWLQVPFSALPGDKNADTK 257
Query: 219 ------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
GF ++++ V + +K P ++L ++ VA N ++ + K +
Sbjct: 258 LPNGANYGFPVSTMHIVANKAWAEKNPAAAKLFAIMQLPVADINAQNAIMHDGKASEGDI 317
Query: 273 ---GRTMLRTHPDLLKNWLI 289
++ H W+
Sbjct: 318 QGHVDGWIKAHQQQFDGWVN 337
>gi|330013351|ref|ZP_08307622.1| glycine betaine-binding periplasmic protein [Klebsiella sp. MS
92-3]
gi|328533539|gb|EGF60262.1| glycine betaine-binding periplasmic protein [Klebsiella sp. MS
92-3]
Length = 327
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 43/309 (13%), Positives = 90/309 (29%), Gaps = 36/309 (11%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRSLKN 73
S A V+ A + ++ + T + S LE LGY + V + S+
Sbjct: 14 SAFAADLPGKGITVKPAQSTISEESFQTLLVSRALE-KLGYTVEKPSEVDYNVAYTSIAA 72
Query: 74 KGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD--- 130
W P + A + + GA ++ + D
Sbjct: 73 GDTTFIATNWQPLHDDMYAAAGGDNKFYRKGVYVSGAAQGYLIDKKTAEQYHITSIDQLK 132
Query: 131 ------IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
+ + A + G PG I I+ S + + A +
Sbjct: 133 DPQIAKLFDTNNDGKADLTGCTPGWGCEAVINHQIDAYGLSKT-VTHNQGNYAAMMADTI 191
Query: 185 RDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEE-----------------ISGFGE 223
+ P ++ +W P+ ++ ++ +L GF
Sbjct: 192 ARYKEGKPVLYYTWTPYWVSDVLKPGKDVVWLQVPFSSLPGEQKNIDTKLANGANYGFPV 251
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV---GRTMLRTH 280
+++ V + +K P + L +K +A N ++ + ++ H
Sbjct: 252 NTMHIVANKAWAEKNPAAATLFSIMKLPIADINAENAMMHEGHASEADINGHVDGWIKAH 311
Query: 281 PDLLKNWLI 289
L +W+
Sbjct: 312 QPLFDSWVK 320
>gi|313822181|gb|EFS59895.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL036PA1]
gi|314924670|gb|EFS88501.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL036PA3]
gi|314978844|gb|EFT22938.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL072PA2]
gi|315081280|gb|EFT53256.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL078PA1]
gi|315083477|gb|EFT55453.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL027PA2]
gi|315087164|gb|EFT59140.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL002PA3]
gi|315089334|gb|EFT61310.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL072PA1]
gi|327329754|gb|EGE71510.1| substrate binding component of glycine/betaine transport system
[Propionibacterium acnes HL096PA3]
gi|327446440|gb|EGE93094.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL013PA2]
gi|328752195|gb|EGF65811.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL020PA1]
gi|332675904|gb|AEE72720.1| transporter [Propionibacterium acnes 266]
Length = 339
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 50/275 (18%), Positives = 98/275 (35%), Gaps = 12/275 (4%)
Query: 17 SYARDADSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKG 75
+ + AD + W + AT + +LE+ GYK IK + L
Sbjct: 63 TTSMKADGKKDITIGAFNGWDESFATAGIMKNVLEKD-GYKVTIKGFDAGPGYAGLVAGD 121
Query: 76 IDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK 135
ID+ W P + ++ + AK +AVN A ++ D+
Sbjct: 122 IDLLTDGWLPVTHADYVKRYGD-KMENLGCWYDNAKLTIAVNKDSKA---RTIGDLKTMG 177
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
E +YGIE G + D K+ LK +S A +Q+++
Sbjct: 178 DEYDNTLYGIEAGAGLTKATKDSA-IPKYGLKNLNFKISSTPAMLAQLKKSTSAGQDIAV 236
Query: 196 LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
W PH + L ++ G E +Y+ R + P +++L++N+ F
Sbjct: 237 TLWRPHWAYGAFPVRDLKDPKKAMGNAE-VIYSFGRPGFEQDFPKVAQLVRNMAFDDNKL 295
Query: 256 NEMMKLI----LNNKQDRQFVGRTMLRTHPDLLKN 286
+++ + ++++ + + D +
Sbjct: 296 SDLEDTMFSADKYGGKNQEKAVEEWISRNNDWVDK 330
>gi|215488000|ref|YP_002330431.1| glycine betaine transporter periplasmic subunit [Escherichia coli
O127:H6 str. E2348/69]
gi|215266072|emb|CAS10492.1| glycine betaine transporter subunit [Escherichia coli O127:H6 str.
E2348/69]
Length = 330
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 41/320 (12%), Positives = 93/320 (29%), Gaps = 36/320 (11%)
Query: 4 ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKL 61
+ A + ++A D V + T+ T + S LE LGY
Sbjct: 6 LFATAFATLISTQTFAADLPGKGITVNPVQSTITEETFQTLLVSRALE-KLGYTVNKPSE 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V + SL + W P + + + GA ++
Sbjct: 65 VDYNVGYTSLASGDATFTAVNWTPLHDNMYEAAGGDKKFYREGVFVNGAAQGYLIDKKTA 124
Query: 122 ALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ + + A + G PG I + +
Sbjct: 125 DQYKITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGWGCEGAINHQLAAYGLT-NTVTHN 183
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEEI---------- 218
+ + A + + P + +W P+ ++++ ++ +L
Sbjct: 184 QGNYAAMMADTISRYKEGKPVFYYTWTPYWVSNELKPGKDVVWLQVPFSALPGDKNADTK 243
Query: 219 ------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
GF ++++ V + +K P ++L ++ VA N ++ + K +
Sbjct: 244 LPNGANYGFPVSTMHIVANKAWAEKNPAAAKLFAIMQLPVADINAQNAIMHDGKASEGDI 303
Query: 273 ---GRTMLRTHPDLLKNWLI 289
++ H W+
Sbjct: 304 QSHVDGWIKAHQQQFDGWVN 323
>gi|126658425|ref|ZP_01729574.1| Substrate-binding region of ABC-type glycine betaine transport
system [Cyanothece sp. CCY0110]
gi|126620357|gb|EAZ91077.1| Substrate-binding region of ABC-type glycine betaine transport
system [Cyanothece sp. CCY0110]
Length = 513
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 38/299 (12%), Positives = 92/299 (30%), Gaps = 30/299 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
++ L + I+++ S + +T+ M + +E K + +
Sbjct: 219 KFLVLFFLIIALGFIAFSWINQSQGQIIIGSKNFTEQIVLGEMVAQQIENNSDLKVDRRF 278
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP----------------YLEEGSIKLV 103
+ ++K + ID ++ Y + + Y +E ++++
Sbjct: 279 NLGGTFICHEAVKAQEIDGYIEYTGTAFTAILERKPISDPNLVYQKVKDVYNQEYQLEVM 338
Query: 104 AENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
Y + + + IK+ D+A+Y E A +
Sbjct: 339 PSLGFENTYAILIREEDAKQYNIKTISDVAQYTPEWTAGFSY--EFLAREDGYPGLSKTY 396
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
+ + + + R N + + S LN+ L +
Sbjct: 397 NL-----QFAQQPKTMELGLMYRALAENNVDLVAGNSTDGLISVLNLEMLEDNKNYF--P 449
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
V + L + PN+S +++ + + S ++ L+ + +Q V LR
Sbjct: 450 PYEAVPVFNQETLKEYPNLSNIIQQLSGQISSEEMQQLNYLVDHERQSVNKVVEDFLRE 508
>gi|313773549|gb|EFS39515.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL074PA1]
gi|313811602|gb|EFS49316.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL083PA1]
gi|313831344|gb|EFS69058.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL007PA1]
gi|313834954|gb|EFS72668.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL056PA1]
gi|314974219|gb|EFT18315.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL053PA1]
gi|315095358|gb|EFT67334.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL038PA1]
gi|327444955|gb|EGE91609.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL043PA1]
Length = 339
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 50/275 (18%), Positives = 98/275 (35%), Gaps = 12/275 (4%)
Query: 17 SYARDADSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKG 75
+ + AD + W + AT + +LE+ GYK IK + L
Sbjct: 63 TTSMKADGKKDITIGAFNGWDESFATAGIMKNVLEKD-GYKVTIKGFDAGPGYAGLVAGD 121
Query: 76 IDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK 135
ID+ W P + ++ + AK +AVN A ++ D+
Sbjct: 122 IDLLTDGWLPVTHADYVKRYGD-KMENLGCWYDNAKLTIAVNKDSKA---RTIGDLKTMG 177
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
E +YGIE G + D K+ LK +S A +Q+++
Sbjct: 178 DEYDNTLYGIEAGAGLTKATKDSA-IPKYGLKNLNFKISSTPAMLAQLKKSTSAGQDIAV 236
Query: 196 LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
W PH + L ++ G E +Y+ R + P +++L++N+ F
Sbjct: 237 TLWRPHWAYGAFPVRDLKDPKKAMGNAE-VIYSFGRPGFEQDFPKVAQLVRNMAFDDNKL 295
Query: 256 NEMMKLI----LNNKQDRQFVGRTMLRTHPDLLKN 286
+++ + ++++ + + D +
Sbjct: 296 SDLEDTMFSADKYGGKNQEKAVEEWISRNNDWVDK 330
>gi|320180198|gb|EFW55134.1| L-proline glycine betaine binding ABC transporter protein ProX
[Shigella boydii ATCC 9905]
Length = 330
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 42/320 (13%), Positives = 95/320 (29%), Gaps = 36/320 (11%)
Query: 4 ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKL 61
+ A L + ++A D V + T+ T + S LE LGY
Sbjct: 6 LFATALATLISTQTFAADLPGKGITVNPVQSTITEETFQTLLVSRALE-KLGYTVNKPSE 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V + SL + W P + + + GA ++
Sbjct: 65 VDYNVGYTSLASGDATFTAVNWTPLHDNMYEAAGGDKKFYREGVFVNGAAQGYLIDKKTA 124
Query: 122 ALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ + + A + G PG I + + +
Sbjct: 125 DQYKITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGWGCEGAINHQLAAYELT-NTVTHN 183
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEEI---------- 218
+ + A + + P + +W P+ ++++ ++ +L
Sbjct: 184 QGNYAAMMADTISRYKEGKPVFYYTWTPYWVSNELKPGKDVVWLQVPFSALPGDKNADTK 243
Query: 219 ------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
GF ++++ V + +K P ++L ++ VA N ++ + K +
Sbjct: 244 LPNGANYGFPVSTMHIVANKAWAEKNPAAAKLFAIMQLPVADINAQNAIMHDGKASEGDI 303
Query: 273 ---GRTMLRTHPDLLKNWLI 289
++ H W+
Sbjct: 304 QGHVDGWIKAHQQQFDGWVN 323
>gi|126734809|ref|ZP_01750555.1| glycine betaine/L-proline ABC transporter, substrate binding
protein, putative [Roseobacter sp. CCS2]
gi|126715364|gb|EBA12229.1| glycine betaine/L-proline ABC transporter, substrate binding
protein, putative [Roseobacter sp. CCS2]
Length = 319
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 40/312 (12%), Positives = 86/312 (27%), Gaps = 34/312 (10%)
Query: 10 FLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFR 69
+ +S V WT A + ++ +G F+
Sbjct: 7 LMAAALVSVLSVPAFAEDVSIGVPTWTGAQAIAYVLGEVVTTRIGGTVEYVPGNNATIFQ 66
Query: 70 SLKNK--GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKS 127
++ ID+ W P+ E F Y++E ++ N V+ A +
Sbjct: 67 AMDQGEGDIDVHPDVWLPNQESFTKQYVDEAGTVTLSSNPYQGNQGFCVSQDFAAANNIT 126
Query: 128 YQD---------IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ +++ PG + + L I A E
Sbjct: 127 DIADLGRPDVAALMDSDGNGLGEMWIGAPGWASANVNEVKVRDYGL-LDFIEPIRAEEAV 185
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG-------------EEISGFGEAS 225
++I+ F +EPH + ++ L ++ + +
Sbjct: 186 KTARIKDSIAKGEGYAFYCYEPHAVWYMFDVVMLTEPAFDPEQYIMLQPSDDADWYENSM 245
Query: 226 VYT---------VVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
V T + + P I+ N + + + I N ++ V +
Sbjct: 246 VATKDDLKQVQIAWSNSLESRSPAIAEFFANFAMTADDVSSLAFEISANGREPAEVAKDW 305
Query: 277 LRTHPDLLKNWL 288
+ + D + L
Sbjct: 306 VEANSDRVDAML 317
>gi|17228469|ref|NP_485017.1| binding protein of ABC transporter component [Nostoc sp. PCC 7120]
gi|17130320|dbj|BAB72931.1| binding protein of ABC transporter component [Nostoc sp. PCC 7120]
Length = 302
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 39/300 (13%), Positives = 81/300 (27%), Gaps = 32/300 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTP----VRFADTGWTDIAATTAMTSVILEEILGYK 56
M K L L T ++ A + S + A +T+ + S +EE K
Sbjct: 1 MKKFLIFFLLSLTLVLAIASCSPSTNTNNGDIIVASKDFTEQDILGEILSQQIEETTNLK 60
Query: 57 TNIKL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP----------------YLEEG 98
+ V ++ ID ++ Y + + Y ++
Sbjct: 61 VARRPRLGGSFVCHNAILAGKIDAYIEYTGTAFTGILKQPVINNPQVVYEKLKQAYNQQF 120
Query: 99 SIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
++++ + + V A +G E E +
Sbjct: 121 QLEVMPSLGFENTFAIIVRGEDARRYKIQTLTDAAQYTPQWRGGFGYE-FLEREDGFPGL 179
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ + ++ I R + + L + L +
Sbjct: 180 AKTYAL-----KFTKPPQIMDLGLIYRALMQKQVDMVAGNSTDGQIARLGLVVLKD--DQ 232
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTM 276
F +VR + L K P + + + S ++ L+ QD + V R
Sbjct: 233 QYFPPYEATPIVRQETLRKYPQLKTAIAQLTGRISADEMRQLNYLVEGELQDVKEVAREF 292
>gi|304385642|ref|ZP_07367986.1| glycine/betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, binding protein [Pediococcus
acidilactici DSM 20284]
gi|304328146|gb|EFL95368.1| glycine/betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, binding protein [Pediococcus
acidilactici DSM 20284]
Length = 308
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 38/293 (12%), Positives = 76/293 (25%), Gaps = 29/293 (9%)
Query: 11 LTTFSISYARDAD----SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAV 64
+ T +S S VR A T+ AM ++E + +
Sbjct: 14 VLTVMLSSCGWPGLNGTSGDTVRIAAQNTTEQQIMGAMIQQLIEHDTNLNAEVINNLGSG 73
Query: 65 PVTFRSLKNKGIDIF---------------MGYWYPSLEKFIAPYLEEGSIKLVAENLQG 109
V+F++ K D+ P + G
Sbjct: 74 TVSFQAQKRDEADLTSIRFSGTDYQTILHGPQGKSPQAVNDYVNKEFNRRYDMTYFPTYG 133
Query: 110 AKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
+ ++ KK GI+ + ++ +
Sbjct: 134 FADTYQFMVTQDFAKKHHIETVSDLKKIAPKMKVGIDQTWLSRKGDGYEDFKKRYGFQFG 193
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV 229
+ + +N L + ++ L + S V
Sbjct: 194 HVYP----MQMGLLYNALASNKMDAVLGYSTDGRVRSYHLKLLKDDRQFF--PPYSASVV 247
Query: 230 VRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
V + L K P ++ +L + K S+ E+ + NN ++ V L+ H
Sbjct: 248 VNNKALKKYPQLAPVLHKLDGKISLETMQELNYQVDNNLKEPSVVASEFLKAH 300
>gi|110642805|ref|YP_670535.1| glycine betaine transporter periplasmic subunit [Escherichia coli
536]
gi|161486139|ref|NP_755114.2| glycine betaine transporter periplasmic subunit [Escherichia coli
CFT073]
gi|170681945|ref|YP_001744830.1| glycine betaine transporter periplasmic subunit [Escherichia coli
SMS-3-5]
gi|191171420|ref|ZP_03032969.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Escherichia coli F11]
gi|218690807|ref|YP_002399019.1| glycine betaine transporter periplasmic subunit [Escherichia coli
ED1a]
gi|218706179|ref|YP_002413698.1| glycine betaine transporter periplasmic subunit [Escherichia coli
UMN026]
gi|227888213|ref|ZP_04006018.1| glycine betaine-binding periplasmic protein precursor [Escherichia
coli 83972]
gi|293406176|ref|ZP_06650102.1| proX [Escherichia coli FVEC1412]
gi|293412037|ref|ZP_06654760.1| conserved hypothetical protein [Escherichia coli B354]
gi|298381913|ref|ZP_06991510.1| glycine betaine-binding periplasmic protein [Escherichia coli
FVEC1302]
gi|300898660|ref|ZP_07116981.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 198-1]
gi|300941047|ref|ZP_07155566.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 21-1]
gi|300986099|ref|ZP_07177715.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 45-1]
gi|300990597|ref|ZP_07179247.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 200-1]
gi|301050522|ref|ZP_07197398.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 185-1]
gi|312965594|ref|ZP_07779824.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Escherichia coli 2362-75]
gi|331658790|ref|ZP_08359732.1| glycine betaine-binding periplasmic protein [Escherichia coli
TA206]
gi|331664236|ref|ZP_08365142.1| glycine betaine-binding periplasmic protein [Escherichia coli
TA143]
gi|331684297|ref|ZP_08384889.1| glycine betaine-binding periplasmic protein [Escherichia coli H299]
gi|110344397|gb|ABG70634.1| glycine betaine-binding periplasmic protein precursor [Escherichia
coli 536]
gi|170519663|gb|ACB17841.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Escherichia coli SMS-3-5]
gi|190908354|gb|EDV67944.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Escherichia coli F11]
gi|218428371|emb|CAR09300.2| glycine betaine transporter subunit ; periplasmic-binding component
of ABC superfamily [Escherichia coli ED1a]
gi|218433276|emb|CAR14176.1| glycine betaine transporter subunit ; periplasmic-binding component
of ABC superfamily [Escherichia coli UMN026]
gi|222034379|emb|CAP77120.1| glycine betaine-binding periplasmic protein [Escherichia coli LF82]
gi|227834853|gb|EEJ45319.1| glycine betaine-binding periplasmic protein precursor [Escherichia
coli 83972]
gi|284922621|emb|CBG35709.1| glycine betaine/L-proline ABC transporter, substrate-binding
protein [Escherichia coli 042]
gi|291426182|gb|EFE99214.1| proX [Escherichia coli FVEC1412]
gi|291468808|gb|EFF11299.1| conserved hypothetical protein [Escherichia coli B354]
gi|298277053|gb|EFI18569.1| glycine betaine-binding periplasmic protein [Escherichia coli
FVEC1302]
gi|300297778|gb|EFJ54163.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 185-1]
gi|300305714|gb|EFJ60234.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 200-1]
gi|300357688|gb|EFJ73558.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 198-1]
gi|300407924|gb|EFJ91462.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 45-1]
gi|300454211|gb|EFK17704.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 21-1]
gi|307554655|gb|ADN47430.1| ABC-type proline/glycine betaine transport system [Escherichia coli
ABU 83972]
gi|312289743|gb|EFR17633.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Escherichia coli 2362-75]
gi|312947214|gb|ADR28041.1| glycine betaine transporter periplasmic subunit [Escherichia coli
O83:H1 str. NRG 857C]
gi|315291002|gb|EFU50367.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 153-1]
gi|315298697|gb|EFU57951.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 16-3]
gi|323188439|gb|EFZ73725.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Escherichia coli RN587/1]
gi|323966931|gb|EGB62359.1| glycine betaine/proline transport system substrate-binding protein
[Escherichia coli M863]
gi|324014410|gb|EGB83629.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 60-1]
gi|327251397|gb|EGE63083.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Escherichia coli STEC_7v]
gi|331053372|gb|EGI25401.1| glycine betaine-binding periplasmic protein [Escherichia coli
TA206]
gi|331058167|gb|EGI30148.1| glycine betaine-binding periplasmic protein [Escherichia coli
TA143]
gi|331077912|gb|EGI49118.1| glycine betaine-binding periplasmic protein [Escherichia coli H299]
Length = 330
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 41/320 (12%), Positives = 93/320 (29%), Gaps = 36/320 (11%)
Query: 4 ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKL 61
+ A + ++A D V + T+ T + S LE LGY
Sbjct: 6 LFATAFATLISTQTFAADLPGKGITVNPVQSTITEETFQTLLVSRALE-KLGYTVNKPSE 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V + SL + W P + + + GA ++
Sbjct: 65 VDYNVGYTSLASGDATFTAVNWTPLHDNMYEAAGGDKKFYREGVFVNGAAQGYLIDKKTA 124
Query: 122 ALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ + + A + G PG I + +
Sbjct: 125 DQYKITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGWGCEGAINHQLAAYGLT-NTVTHN 183
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEEI---------- 218
+ + A + + P + +W P+ ++++ ++ +L
Sbjct: 184 QGNYAAMMADTISRYKEGKPVFYYTWTPYWVSNELKPGKDVVWLQVPFSALPGDKNADTK 243
Query: 219 ------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
GF ++++ V + +K P ++L ++ VA N ++ + K +
Sbjct: 244 LPNGANYGFPVSTMHIVANKAWAEKNPAAAKLFAIMQLPVADINAQNAIMHDGKASEGDI 303
Query: 273 ---GRTMLRTHPDLLKNWLI 289
++ H W+
Sbjct: 304 QGHVDGWIKAHQQQFDGWVN 323
>gi|16080434|ref|NP_391261.1| glycine betaine/carnitine/choline/choline sulfate ABC transporter
osmoprotectant-binding lipoprotein [Bacillus subtilis
subsp. subtilis str. 168]
gi|7387985|sp|O32243|OPUCC_BACSU RecName: Full=Glycine betaine/carnitine/choline-binding protein;
AltName: Full=Osmoprotectant-binding protein; Flags:
Precursor
gi|2635894|emb|CAB15386.1| glycine betaine/carnitine/choline/choline sulfate ABC transporter
(osmoprotectant-binding lipoprotein) [Bacillus subtilis
subsp. subtilis str. 168]
Length = 303
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 32/306 (10%), Positives = 77/306 (25%), Gaps = 33/306 (10%)
Query: 1 MYKI--LAVCLFLTTFSISYARDA----DSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
M KI L + + S ++ T+ M + ++E
Sbjct: 1 MTKIKWLGAFALVFVMLLGGCSLPGLGGASDDTIKIGAQSMTESEIVANMIAQLIEHDTD 60
Query: 55 YKTNIKL--LAVPVTFRSLKNKGIDIFMGYW---------------YPSLEKFIAPYLEE 97
T + + V +++ IDI + P I +
Sbjct: 61 LNTALVKNLGSNYVQHQAMLGGDIDISATRYSGTDLTSTLGKEAEKDPKKALNIVQNEFQ 120
Query: 98 GSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILD 157
+ G A + ++ KK G++ +
Sbjct: 121 KRFSYKWFDSYGFDNTYAFTVTKKFAEKEHINTVSDLKKNASQYKLGVDNAWLKRKG--- 177
Query: 158 MINNNKFSLKGFRLIEAS-ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ K + + + + +N L++ ++ L
Sbjct: 178 --DGYKGFVSTYGFEFGTTYPMQIGLVYDAVKNGKMDAVLAYSTDGRIKAYDLKILKD-- 233
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F V+ L + P + ++ + + E+ + ++ V +
Sbjct: 234 DKRFFPPYDCSPVIPEKVLKEHPELEGVINKLIGQIDTETMQELNYEVDGKLKEPSVVAK 293
Query: 275 TMLRTH 280
L H
Sbjct: 294 EFLEKH 299
>gi|329726437|gb|EGG62900.1| glycine betaine/carnitine/choline-binding protein [Staphylococcus
epidermidis VCU144]
gi|329735031|gb|EGG71328.1| glycine betaine/carnitine/choline-binding protein [Staphylococcus
epidermidis VCU028]
Length = 314
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 32/309 (10%), Positives = 80/309 (25%), Gaps = 35/309 (11%)
Query: 1 MYK--------ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEI 52
M K I + L+ S+ D ++ V+ T ++ M +++E
Sbjct: 1 MKKYLNYTLILIALSLIVLSGCSLPGLGDGNAKDDVKITTTETSETKIIGHMEKLLIEHE 60
Query: 53 LGYKTNIKL----LAVPVTFRSLKNKGIDIFMGYWY---------------PSLEKFIAP 93
K L + + +L+ ++ + P
Sbjct: 61 TDGKIKPTLIGNLGSSIIQHNALQRGDANMSAVRYTGTELTSVLAAKPTKDPDKAMSETQ 120
Query: 94 YLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQ 153
L + + G A + ++ +K G++
Sbjct: 121 RLFKKKYDEKYYHSLGFANTYAFMVTKETAKKYHLEKVSDLEKYKDELRLGMDTQWMNRA 180
Query: 154 RILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLP 213
+ K +++ + +NN V + + + ++ L
Sbjct: 181 GDGYPAFVKDYGFKF----DSARPMQIGLVYDALKNNKLDVAVGYSTDGRIAAYDLKILE 236
Query: 214 GGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQF 271
+ + + P I + LK + K S ++ ++
Sbjct: 237 DDRKFF--PPYDGSPLANEQLIKDNPEIDKALKKLEGKISTEEMQKLNYEADGKGKEPAV 294
Query: 272 VGRTMLRTH 280
+ L+ H
Sbjct: 295 IAEEYLKKH 303
>gi|157162130|ref|YP_001459448.1| glycine betaine transporter periplasmic subunit [Escherichia coli
HS]
gi|170019069|ref|YP_001724023.1| glycine betaine transporter periplasmic subunit [Escherichia coli
ATCC 8739]
gi|188495498|ref|ZP_03002768.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Escherichia coli 53638]
gi|193065963|ref|ZP_03047022.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Escherichia coli E22]
gi|194427844|ref|ZP_03060390.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Escherichia coli B171]
gi|218696276|ref|YP_002403943.1| glycine betaine transporter periplasmic subunit [Escherichia coli
55989]
gi|253772460|ref|YP_003035291.1| glycine betaine transporter periplasmic subunit [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254162616|ref|YP_003045724.1| glycine betaine transporter periplasmic subunit [Escherichia coli B
str. REL606]
gi|260845327|ref|YP_003223105.1| high-affinity transport system for glycine betaine and proline,
periplasmic-binding component [Escherichia coli O103:H2
str. 12009]
gi|260856790|ref|YP_003230681.1| high-affinity transport system for glycine betaine and proline,
periplasmic-binding component [Escherichia coli O26:H11
str. 11368]
gi|260869358|ref|YP_003235760.1| high-affinity transport system for glycine betaine and proline,
periplasmic-binding component [Escherichia coli O111:H-
str. 11128]
gi|300930532|ref|ZP_07145928.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 187-1]
gi|301306004|ref|ZP_07212084.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 124-1]
gi|307314432|ref|ZP_07594037.1| Substrate-binding region of ABC-type glycine betaine transport
system [Escherichia coli W]
gi|309795138|ref|ZP_07689557.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 145-7]
gi|312973110|ref|ZP_07787283.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Escherichia coli 1827-70]
gi|157067810|gb|ABV07065.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Escherichia coli HS]
gi|169753997|gb|ACA76696.1| Substrate-binding region of ABC-type glycine betaine transport
system [Escherichia coli ATCC 8739]
gi|188490697|gb|EDU65800.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Escherichia coli 53638]
gi|192926377|gb|EDV81012.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Escherichia coli E22]
gi|194414077|gb|EDX30353.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Escherichia coli B171]
gi|218353008|emb|CAU98826.1| glycine betaine transporter subunit ; periplasmic-binding component
of ABC superfamily [Escherichia coli 55989]
gi|242378241|emb|CAQ33016.1| proX, subunit of proline ABC transporter [Escherichia coli
BL21(DE3)]
gi|253323504|gb|ACT28106.1| Substrate-binding region of ABC-type glycine betaine transport
system [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|253974517|gb|ACT40188.1| glycine betaine transporter subunit [Escherichia coli B str.
REL606]
gi|253978684|gb|ACT44354.1| glycine betaine transporter subunit [Escherichia coli BL21(DE3)]
gi|257755439|dbj|BAI26941.1| high-affinity transport system for glycine betaine and proline,
periplasmic-binding component [Escherichia coli O26:H11
str. 11368]
gi|257760474|dbj|BAI31971.1| high-affinity transport system for glycine betaine and proline,
periplasmic-binding component [Escherichia coli O103:H2
str. 12009]
gi|257765714|dbj|BAI37209.1| high-affinity transport system for glycine betaine and proline,
periplasmic-binding component [Escherichia coli O111:H-
str. 11128]
gi|300461588|gb|EFK25081.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 187-1]
gi|300838715|gb|EFK66475.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 124-1]
gi|306906000|gb|EFN36521.1| Substrate-binding region of ABC-type glycine betaine transport
system [Escherichia coli W]
gi|308121109|gb|EFO58371.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 145-7]
gi|310333052|gb|EFQ00266.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Escherichia coli 1827-70]
gi|315061960|gb|ADT76287.1| glycine betaine transporter subunit [Escherichia coli W]
gi|315254455|gb|EFU34423.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 85-1]
gi|323154890|gb|EFZ41082.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Escherichia coli EPECa14]
gi|323159818|gb|EFZ45790.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Escherichia coli E128010]
gi|323180100|gb|EFZ65652.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Escherichia coli 1180]
gi|323377459|gb|ADX49727.1| Substrate-binding region of ABC-type glycine betaine transport
system [Escherichia coli KO11]
gi|323935627|gb|EGB31944.1| proX protein [Escherichia coli E1520]
gi|323941485|gb|EGB37668.1| proX protein [Escherichia coli E482]
gi|323960575|gb|EGB56202.1| proX protein [Escherichia coli H489]
gi|324120038|gb|EGC13915.1| proX protein [Escherichia coli E1167]
gi|332344561|gb|AEE57895.1| substrate binding domain of ABC-type glycine betaine transport
system protein [Escherichia coli UMNK88]
Length = 330
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 41/320 (12%), Positives = 94/320 (29%), Gaps = 36/320 (11%)
Query: 4 ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKL 61
+ A + ++A D V + T+ T + S LE LGY
Sbjct: 6 LFATAFATLISTQTFAADLPGKGITVNPVQSTITEETFQTLLVSRALE-KLGYTVNKPSE 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V + SL + W P + + + GA ++
Sbjct: 65 VDYNVGYTSLASGDATFTAVNWTPLHDNMYEAAGGDKKFYREGVFVNGAAQGYLIDKKTA 124
Query: 122 ALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ + + A + G PG I + + +
Sbjct: 125 DQYKITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGWGCEGAINHQLAAYELT-HTVTHN 183
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEEI---------- 218
+ + A + + P + +W P+ ++++ ++ +L
Sbjct: 184 QGNYAAMMADTISRYKEGKPVFYYTWTPYWVSNELKPGKDVVWLQVPFSALPGDKNADTK 243
Query: 219 ------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
GF ++++ V + +K P ++L ++ VA N ++ + K +
Sbjct: 244 LPNGANYGFPVSTMHIVANKAWAEKNPAAAKLFAIMQLPVADINAQNAIMHDGKASEGDI 303
Query: 273 ---GRTMLRTHPDLLKNWLI 289
++ H W+
Sbjct: 304 QGHVDGWIKAHQQQFDGWVN 323
>gi|222153015|ref|YP_002562192.1| glycine betaine ABC transporter [Streptococcus uberis 0140J]
gi|222113828|emb|CAR41915.1| ABC-type glycine betaine transport system protein [Streptococcus
uberis 0140J]
Length = 508
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 36/305 (11%), Positives = 82/305 (26%), Gaps = 38/305 (12%)
Query: 1 MYKILAVCLFLTTFSISYARDA------DSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
+ KIL + ++ + A + + ++E
Sbjct: 206 LRKILLAFSLIVIALLASYSPKIFSRFHKEKERIVIAGKLGAEPDILINLYKEMIENHTD 265
Query: 55 YKTNIK--LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL----------------- 95
+ +K +++LK+ IDI+ + +
Sbjct: 266 LQVEVKSNFGKTTFLYQALKSGDIDIYPEFTGTITSSLLEEKPSLSNDPKKVYEDARDGI 325
Query: 96 -EEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQR 154
++ + L+ Y +AV + K++K Y +
Sbjct: 326 AKQDQLVLLKPFAYQNTYAIAVPESLAQE--------KKWRKISDLLPYQNQIKAGFTLE 377
Query: 155 ILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPG 214
D + NK + + L + + +N V ++ ++ L
Sbjct: 378 FKDRPDGNKGLQETYGLQLQVSTMEPALRYQAIASNDIQVTDAYSTDAELRKYHLKVLED 437
Query: 215 GEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFV 272
+ F +++ L K P + +L + K S M + Q V
Sbjct: 438 --DKHLFPPYQGAPLLKRSLLKKHPELKTILNRLSGKISETEMQNMNYKVSVQGQSANQV 495
Query: 273 GRTML 277
+ L
Sbjct: 496 AKDYL 500
>gi|73661762|ref|YP_300543.1| glycine/betaine ABC transporter periplasmic protein [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
gi|72494277|dbj|BAE17598.1| periplasmic glycine betaine choline-binding protein of an ABC-type
transport system [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 313
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 32/308 (10%), Positives = 79/308 (25%), Gaps = 34/308 (11%)
Query: 1 MYKI-------LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL 53
M KI + L+ S+ S V+ ++ + M +++E
Sbjct: 1 MKKIKQYCIVLVLCLTVLSGCSLPGLGGNSSDDEVKITALATSESQIMSHMLRLLIEHDT 60
Query: 54 GYKTNI----KLLAVPVTFRSLKNKGIDIF------MGYWYPSLEKFIAPYLEEGSIKLV 103
K L + + +L N ++ E I +
Sbjct: 61 EGKIKPSLINNLGSSTIQHNALVNGDANLSGARYNGTDLTGALNEDPIKDPKKAMKATQD 120
Query: 104 AE---------NLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQR 154
+ G A + + ++ K G++ +
Sbjct: 121 GFQKKFDQTFFDSYGFANTYAFMVTKATAEKYNLETVSDLKAHSDKLKLGVDSSWLNREG 180
Query: 155 ILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPG 214
+ + + +N V + + + ++ L
Sbjct: 181 DGYPGFTKAYGFDFNTVRP----MQIGLVYDALNSNNLDVAVGYSTDGRIAAYDLKVLKD 236
Query: 215 GEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFV 272
+ F +V ++ L + P + ++ + K S + ++ Q+ V
Sbjct: 237 --DKHFFPPYDASSVATNNLLKQHPELKPTIEKLHNKISTSEMQKLNYQADGEGQEPAVV 294
Query: 273 GRTMLRTH 280
L+ H
Sbjct: 295 AEKFLKAH 302
>gi|57865409|ref|YP_189585.1| amino acid ABC transporter amino acid-binding protein
[Staphylococcus epidermidis RP62A]
gi|57636067|gb|AAW52855.1| amino acid ABC transporter, amino acid-binding protein
[Staphylococcus epidermidis RP62A]
Length = 314
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 32/309 (10%), Positives = 80/309 (25%), Gaps = 35/309 (11%)
Query: 1 MYK--------ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEI 52
M K I + L+ S+ D ++ V+ T ++ M +++E
Sbjct: 1 MKKYLNYTLILIALSLIVLSGCSLPGLGDGNAKDDVKITTTETSETKIIGHMEKLLIEHE 60
Query: 53 LGYKTNIKL----LAVPVTFRSLKNKGIDIFMGYWY---------------PSLEKFIAP 93
K L + + +L+ ++ + P
Sbjct: 61 TDGKIKPTLIGNLGSSIIQHNALQRGDANMSAVRYTGTELTSVLAAKPTKDPDKAMSETQ 120
Query: 94 YLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQ 153
L + + G A + ++ +K G++
Sbjct: 121 RLFKKKYDEKYYHSLGFANTYAFMVTKETAKKYHLKKVSDLEKYKDELRLGMDTQWMNRA 180
Query: 154 RILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLP 213
+ K +++ + +NN V + + + ++ L
Sbjct: 181 GDGYPAFVKDYGFKF----DSARPMQIGLVYDALKNNKLDVAVGYSTDGRIAAYDLKILE 236
Query: 214 GGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQF 271
+ + + P I + LK + K S ++ ++
Sbjct: 237 DDRKFF--PPYDGSPLANEQLIKDNPEIDKALKKLEGKISTEEMQKLNYEADGKGKEPAV 294
Query: 272 VGRTMLRTH 280
+ L+ H
Sbjct: 295 IAEEYLKKH 303
>gi|70727170|ref|YP_254086.1| hypothetical protein SH2171 [Staphylococcus haemolyticus JCSC1435]
gi|68447896|dbj|BAE05480.1| opuBC [Staphylococcus haemolyticus JCSC1435]
Length = 504
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 38/303 (12%), Positives = 88/303 (29%), Gaps = 35/303 (11%)
Query: 2 YKILAVCLFLTTFSISYARDA---DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
K+L + + + A ++ + T M +++E+ +
Sbjct: 207 KKLLITVGAMILIILLVIVVPLFGKKGDTITLAGKLGSEPSIITNMYKILIEDETDDTVD 266
Query: 59 IK--LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP-----------------YLEEGS 99
+K + F +LK+ ID ++ + L + ++
Sbjct: 267 VKDGMGKTSFLFNALKSDDIDGYLEFTGTVLGELTKEDLKSKKEDAVYQQAKQSLEKKYD 326
Query: 100 IKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ ++ Y LAV IK+ D+ K + ++ N+ + +
Sbjct: 327 MTMLKPMKYNNTYALAVKRDFAKENNIKTIGDLQKVEDKIKPGFTM--EFNDRSDGYKAV 384
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+L + +E + ++ N+ L +
Sbjct: 385 AKAYGLNLSNVKKMEPKLR------YTAVEKGDINLIDAYSTDAELKQYNMVVLKD--DK 436
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F + + +L + P I + L + K S EM + +D V +
Sbjct: 437 HVFPPYQGAPMFKEKFLKQHPEIKKPLNKLEGKISDEEMQEMNYKVTVKNEDPYNVAKHY 496
Query: 277 LRT 279
L
Sbjct: 497 LEK 499
>gi|293394759|ref|ZP_06639050.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Serratia odorifera DSM
4582]
gi|291422710|gb|EFE95948.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Serratia odorifera DSM
4582]
Length = 333
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 38/327 (11%), Positives = 86/327 (26%), Gaps = 40/327 (12%)
Query: 1 MYKI----LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
M K +A+ + + A V+ + ++ T + S LE LGY
Sbjct: 1 MRKTGIWAVALTTLIGSQMTYAADLPGKGVSVQPVQSTISEETFQTLLVSKALE-KLGYD 59
Query: 57 TN-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
+ + V + S+ + W P + + GA
Sbjct: 60 VKAPREVDYNVAYTSIASGDATFLAVNWDPLHADQYKAAGGDAKFYREGVYVDGAAQGYL 119
Query: 116 VNDVGFALGIKSYQD---------IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSL 166
++ + + + A + G PG I + S
Sbjct: 120 IDKKTAEKYHITNVEQLKDPKIAKLFDSNGNGKADLTGCTPGWGCEAVINHHLKAYDLS- 178
Query: 167 KGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP----INSDLNIHYLPGGEE----- 217
+ + A + + P ++ +W P+ + ++ +L
Sbjct: 179 NTVEHNQGNYAAMIADTITRYKEGKPILYYTWTPYWVSDVLVPGRDVVWLQVPFSSLPGE 238
Query: 218 ------------ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNN 265
GF ++ + P ++L +K +A N +
Sbjct: 239 QKNVDTKLPNGANYGFPVNTMRIAANKQWAQANPAAAKLFAIMKLPIADVNAQNLRMHEG 298
Query: 266 KQDRQFV---GRTMLRTHPDLLKNWLI 289
+ + ++ H W+
Sbjct: 299 QSSEADIENHVNGWIKAHQATFDGWVK 325
>gi|91777144|ref|YP_552352.1| glycine betaine/choline/proline ABC transporter periplasmic
ligand-binding protein [Burkholderia xenovorans LB400]
gi|91689804|gb|ABE33002.1| ABC glycine betaine/choline/proline family transporter, periplasmic
ligand binding protein [Burkholderia xenovorans LB400]
Length = 298
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 42/302 (13%), Positives = 84/302 (27%), Gaps = 33/302 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+I + + A A + +T+ T +TS L GY + +
Sbjct: 6 KRIRWIAAGALFCASLQAGAA----TLVLGGKNFTEQYVLTEITSQYLRAK-GYTIDART 60
Query: 62 L-AVPVTFRSLKNKGIDIFMGYWYP---------------SLEKFIAPYLEEGSIKLVAE 105
+ + +N +DI Y ++ + + + + +
Sbjct: 61 GLGSTLLRSAQENGQVDITWEYTGTAAIVYNKITEKLDPKTMYERVKALDAKRGLVWLDC 120
Query: 106 NLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKKELGAK---IYGIEPGNEGNQRILDMINN 161
+ Y L + GI++ +A K + +
Sbjct: 121 SPLNNTYALGLPQQVAQQTGIRTISQLAAKMAAEPKKKHVFAMDAEFANRPDGLKPLEAA 180
Query: 162 NKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
+ + NN + L + NI L + F
Sbjct: 181 YGMQFSREETRQMDPG----LVYTALHNNQVPIGLIYTTDGRVKGFNIVPLED--DRHYF 234
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+ VVR LD+ P ++ L + + EM K + + + + V LRT
Sbjct: 235 PAYNATPVVRKATLDQNPQLAPQLNALSDALNNDTMLEMNKQVDVDGRPVREVAAEFLRT 294
Query: 280 HP 281
H
Sbjct: 295 HK 296
>gi|309798834|ref|ZP_07693096.1| choline transporter [Streptococcus infantis SK1302]
gi|308117536|gb|EFO54950.1| choline transporter [Streptococcus infantis SK1302]
Length = 506
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 29/305 (9%), Positives = 87/305 (28%), Gaps = 39/305 (12%)
Query: 3 KILAVCLFLTTFSISYARDA-----DSCTPVRFADTGWTDIAATTAMTSVILEEILG--Y 55
+ + + + + + + A + M +++EE
Sbjct: 207 RTIVSAFAVMILGLGVSYVPSIIPHNEKDNLVIAGKLGPEPEILMNMYKLLIEENTDMTV 266
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------E 97
+++LK IDI+ + + P + +
Sbjct: 267 TVKPNFGKTDFLYQALKKGDIDIYPEFTGTITGSLLQPTPKVSNDSEEVYEVARDGIKKQ 326
Query: 98 GSIKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
++ L+ + +AV +K+ D+ + +L A N+
Sbjct: 327 DNLVLLNHMAYQNTFAIAVPKSIAKEYHLKTISDLKGVQDKLKAGFTL--EFNDREDGNK 384
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ + +L + + + + + P + L
Sbjct: 385 GLQSVYGLNLNVATMEP-------ALRYDAIKAGDIQIMEVYSTDPEIERYQLQILED-- 435
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F +++++ L+K P + +L + K + + +++ + + +D +
Sbjct: 436 DQHLFPPYQGAPLMKAELLEKHPELEAVLNKLAGKITESQMSQLNYQVGIDGKDAYTIAH 495
Query: 275 TMLRT 279
L
Sbjct: 496 DFLVE 500
>gi|50842953|ref|YP_056180.1| substrate binding component of glycine/betaine transport system
[Propionibacterium acnes KPA171202]
gi|50840555|gb|AAT83222.1| substrate binding component of glycine/betaine transport system
[Propionibacterium acnes KPA171202]
gi|313763612|gb|EFS34976.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL013PA1]
gi|313794007|gb|EFS42031.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL110PA1]
gi|313801393|gb|EFS42644.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL110PA2]
gi|313816792|gb|EFS54506.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL059PA1]
gi|314914767|gb|EFS78598.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL005PA4]
gi|314920818|gb|EFS84649.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL050PA3]
gi|314930497|gb|EFS94328.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL067PA1]
gi|314957470|gb|EFT01573.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL002PA1]
gi|314968529|gb|EFT12627.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL037PA1]
gi|315099240|gb|EFT71216.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL059PA2]
gi|315106799|gb|EFT78775.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL030PA1]
gi|327454991|gb|EGF01646.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL087PA3]
gi|328758345|gb|EGF71961.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL025PA2]
Length = 339
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 49/275 (17%), Positives = 97/275 (35%), Gaps = 12/275 (4%)
Query: 17 SYARDADSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKG 75
+ + AD + W + AT + +LE+ GYK IK + L
Sbjct: 63 TTSMKADGKKDITIGAFNGWDESFATAGIMKNVLEKD-GYKVTIKGFDAGPGYAGLVAGD 121
Query: 76 IDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK 135
ID+ W P + ++ + AK +AVN A ++ D+
Sbjct: 122 IDLLTDGWLPVTHADYVKRYGD-KMENLGCWYDNAKLTIAVNKDSKA---RTIGDLKTMG 177
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
E +YGIE G + D + LK +S A +Q+++
Sbjct: 178 DEYDNTLYGIEAGAGLTKATKDSAIPK-YGLKNLNFKISSTPAMLAQLKKSTSAGQDIAV 236
Query: 196 LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
W PH + L ++ G E +Y+ R + P +++L++N+ F
Sbjct: 237 TLWRPHWAYGAFPVRDLKDPKKAMGNAE-VIYSFGRPGFEQDFPKVAQLVRNMAFDDNKL 295
Query: 256 NEMMKLI----LNNKQDRQFVGRTMLRTHPDLLKN 286
+++ + ++++ + + D +
Sbjct: 296 SDLEDTMFSADKYGGKNQEKAVEEWISRNNDWVDK 330
>gi|126174514|ref|YP_001050663.1| glycine betaine transporter periplasmic subunit [Shewanella baltica
OS155]
gi|125997719|gb|ABN61794.1| Substrate-binding region of ABC-type glycine betaine transport
system [Shewanella baltica OS155]
Length = 344
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 46/336 (13%), Positives = 94/336 (27%), Gaps = 50/336 (14%)
Query: 1 MYKILAVCLFLTTFSISYARDAD-----SCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
+ K++ A AD V+ A W A+ LE LGY
Sbjct: 3 LKKVILGAALAAMTVTGSAALADTLKPGEGITVKPARATWDTGFFQEALVRRGLET-LGY 61
Query: 56 KTN-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
K L P+ ++++ ID + W+P + +E + K+ G
Sbjct: 62 DVEKPKTLVNPIFYKTVTLGDIDYWANGWFPMHNDQLPSNFDEKAEKIGYVIKAGGLGGY 121
Query: 115 AVNDVGFALGIKSYQDIAKYKK---------ELGAKIYGIEPGNEGNQRILDMINNNKFS 165
++ + K + + A + PG + I ++
Sbjct: 122 LISKKEADKYNITSLADFKRPEVKQAFDTNGDGKADLTACPPGWGCEKIITHHMDVYGLK 181
Query: 166 LKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE-------- 217
++A+ A + +N P F +W P+ +
Sbjct: 182 DS-INPVKAAYAAGMASAMAGYKNGGPIFFYTWAPNWTIFKMKPGKDVVWINVPEIKPTK 240
Query: 218 ----------------------ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
GF + + V + + P + + +A
Sbjct: 241 AQSAAVDRMTVKGLEGAVSDPIKLGFVASDIQIVANKKFAKQNPAARKFFEVFTLPLADI 300
Query: 256 NEMMKLILNNKQDRQFV---GRTMLRTHPDLLKNWL 288
NE + + ++ +Q + + + D WL
Sbjct: 301 NEQNTRMNDGEKSKQDIQHHVDGWIAKNQDKWNGWL 336
>gi|242242091|ref|ZP_04796536.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Staphylococcus epidermidis W23144]
gi|242234456|gb|EES36768.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Staphylococcus epidermidis W23144]
Length = 504
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 42/303 (13%), Positives = 89/303 (29%), Gaps = 35/303 (11%)
Query: 2 YKILAVCLFLTTFSISYAR---DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
K+L + I A + A ++ + T M +++EE
Sbjct: 207 KKLLISLGTIVIVIIIAIAIPMAAQKGDKITLAGKLGSEPSIITNMYKILIEEDTDDTVE 266
Query: 59 IK--LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP-----------------YLEEGS 99
+K + F +LK+ ID ++ + L + ++
Sbjct: 267 VKDGMGKTSFLFNALKSDEIDGYLEFTGTVLGELTKEDLKSKKEKDVYQQAKSSLEKKYH 326
Query: 100 IKLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ ++ Y LAV IK+ D+ K + +L N+ +
Sbjct: 327 MTMLKPMKYNNTYALAVKRDFAEKHQIKTIGDLRKVEDKLKPGFTL--EFNDRPDGYKAV 384
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+L + +E + + ++ N+ L +
Sbjct: 385 KKTYHLNLSNVKTMEPKLR------YTAVKKGDINLIDAYSTDAELKQYNMVVLKD--DQ 436
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F + + YL+ P + + L + + + EM + K+D V R
Sbjct: 437 HVFPPYQGAPLFKEKYLNDHPEVKKPLNKLENRITDEEMQEMNYKVTVKKEDPYKVAREY 496
Query: 277 LRT 279
L
Sbjct: 497 LEK 499
>gi|27467142|ref|NP_763779.1| glycine betaine/carnitine/choline ABC transporter (osmoprotec)
opuCC [Staphylococcus epidermidis ATCC 12228]
gi|57865715|ref|YP_189904.1| amino acid ABC transporter amino acid-binding protein
[Staphylococcus epidermidis RP62A]
gi|251811555|ref|ZP_04826028.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Staphylococcus epidermidis
BCM-HMP0060]
gi|282876711|ref|ZP_06285567.1| ABC transporter, substrate-binding protein, QAT family
[Staphylococcus epidermidis SK135]
gi|293367460|ref|ZP_06614118.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Staphylococcus epidermidis
M23864:W2(grey)]
gi|27314684|gb|AAO03821.1|AE016744_224 glycine betaine/carnitine/choline ABC transporter (osmoprotec)
opuCC [Staphylococcus epidermidis ATCC 12228]
gi|57636373|gb|AAW53161.1| amino acid ABC transporter, amino acid-binding protein
[Staphylococcus epidermidis RP62A]
gi|251804933|gb|EES57590.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Staphylococcus epidermidis
BCM-HMP0060]
gi|281294362|gb|EFA86900.1| ABC transporter, substrate-binding protein, QAT family
[Staphylococcus epidermidis SK135]
gi|291318406|gb|EFE58794.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329732195|gb|EGG68549.1| glycine betaine/carnitine/choline-binding protein [Staphylococcus
epidermidis VCU144]
gi|329732775|gb|EGG69123.1| glycine betaine/carnitine/choline-binding protein [Staphylococcus
epidermidis VCU028]
gi|329735846|gb|EGG72126.1| glycine betaine/carnitine/choline-binding protein [Staphylococcus
epidermidis VCU045]
Length = 319
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 29/304 (9%), Positives = 77/304 (25%), Gaps = 31/304 (10%)
Query: 2 YKILAVCLFLTTFSISYA----RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
K L V + T +++ S VR G ++ + M +++E +
Sbjct: 5 KKYLIVLVLCLTVLSGCNLPGLKNSHSDDDVRITSLGTSESQIISHMLRLLIEHDTKGEI 64
Query: 58 NIKL----LAVPVTFRSLKNKGIDIFMGYWY---------------PSLEKFIAPYLEEG 98
L + + ++ + ++ + P +
Sbjct: 65 KPTLINNLGSSTIQHNAVTSGQANMSGTRYTGTDLTGALKEDPIKDPKKAMKATQEGFKK 124
Query: 99 SIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
N G + A+ + ++ +K G++ +
Sbjct: 125 KYNQTFFNSYGFENTYALIVTKETAKKYHLETVSDLEKHAKDLRVGMDSSWMDRKGDGYP 184
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
++ + + + V + + S ++ L
Sbjct: 185 AFKKEYGYSFGTVRP----MQIGLVYDALSSGKLDVAVGYSTDGRISAYDLKVLEDDRRF 240
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
+ L + P + ++K + K S E+ ++ V
Sbjct: 241 F--PPYDASPLASDQLLKEKPELKPIVKKLEGKISTEQMQELNYQADGKGKEPATVAEDF 298
Query: 277 LRTH 280
L+ H
Sbjct: 299 LKKH 302
>gi|332639767|pdb|3PPN|A Chain A, Structures Of The Substrate-Binding Protein Provide
Insights Into The Multiple Compatible Solutes Binding
Specificities Of Bacillus Subtilis Abc Transporter Opuc
gi|332639768|pdb|3PPN|B Chain B, Structures Of The Substrate-Binding Protein Provide
Insights Into The Multiple Compatible Solutes Binding
Specificities Of Bacillus Subtilis Abc Transporter Opuc
gi|332639769|pdb|3PPO|A Chain A, Structures Of The Substrate-Binding Protein Provide
Insights Into The Multiple Compatible Solutes Binding
Specificities Of Bacillus Subtilis Abc Transporter Opuc
gi|332639770|pdb|3PPO|B Chain B, Structures Of The Substrate-Binding Protein Provide
Insights Into The Multiple Compatible Solutes Binding
Specificities Of Bacillus Subtilis Abc Transporter Opuc
gi|332639771|pdb|3PPP|A Chain A, Structures Of The Substrate-Binding Protein Provide
Insights Into The Multiple Compatible Solutes Binding
Specificities Of Bacillus Subtilis Abc Transporter Opuc
gi|332639772|pdb|3PPP|B Chain B, Structures Of The Substrate-Binding Protein Provide
Insights Into The Multiple Compatible Solutes Binding
Specificities Of Bacillus Subtilis Abc Transporter Opuc
gi|332639773|pdb|3PPQ|A Chain A, Structures Of The Substrate-Binding Protein Provide
Insights Into The Multiple Compatible Solutes Binding
Specificities Of Bacillus Subtilis Abc Transporter Opuc
gi|332639774|pdb|3PPQ|B Chain B, Structures Of The Substrate-Binding Protein Provide
Insights Into The Multiple Compatible Solutes Binding
Specificities Of Bacillus Subtilis Abc Transporter Opuc
gi|332639775|pdb|3PPR|A Chain A, Structures Of The Substrate-Binding Protein Provide
Insights Into The Multiple Compatible Solutes Binding
Specificities Of Bacillus Subtilis Abc Transporter Opuc
gi|332639776|pdb|3PPR|B Chain B, Structures Of The Substrate-Binding Protein Provide
Insights Into The Multiple Compatible Solutes Binding
Specificities Of Bacillus Subtilis Abc Transporter Opuc
Length = 311
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 32/306 (10%), Positives = 77/306 (25%), Gaps = 33/306 (10%)
Query: 1 MYKI--LAVCLFLTTFSISYARDA----DSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
M KI L + + S ++ T+ M + ++E
Sbjct: 9 MTKIKWLGAFALVFVMLLGGCSLPGLGGASDDTIKIGAQSMTESEIVANMIAQLIEHDTD 68
Query: 55 YKTNIKL--LAVPVTFRSLKNKGIDIFMGYW---------------YPSLEKFIAPYLEE 97
T + + V +++ IDI + P I +
Sbjct: 69 LNTALVKNLGSNYVQHQAMLGGDIDISATRYSGTDLTSTLGKEAEKDPKKALNIVQNEFQ 128
Query: 98 GSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILD 157
+ G A + ++ KK G++ +
Sbjct: 129 KRFSYKWFDSYGFDNTYAFTVTKKFAEKEHINTVSDLKKNASQYKLGVDNAWLKRKG--- 185
Query: 158 MINNNKFSLKGFRLIEAS-ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ K + + + + +N L++ ++ L
Sbjct: 186 --DGYKGFVSTYGFEFGTTYPMQIGLVYDAVKNGKMDAVLAYSTDGRIKAYDLKILKD-- 241
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F V+ L + P + ++ + + E+ + ++ V +
Sbjct: 242 DKRFFPPYDCSPVIPEKVLKEHPELEGVINKLIGQIDTETMQELNYEVDGKLKEPSVVAK 301
Query: 275 TMLRTH 280
L H
Sbjct: 302 EFLEKH 307
>gi|313813337|gb|EFS51051.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL025PA1]
Length = 335
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 49/275 (17%), Positives = 97/275 (35%), Gaps = 12/275 (4%)
Query: 17 SYARDADSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKG 75
+ + AD + W + AT + +LE+ GYK IK + L
Sbjct: 59 TTSMKADGKKDITIGAFNGWDESFATAGIMKNVLEKD-GYKVTIKGFDAGPGYAGLVAGD 117
Query: 76 IDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK 135
ID+ W P + ++ + AK +AVN A ++ D+
Sbjct: 118 IDLLTDGWLPVTHADYVKRYGD-KMENLGCWYDNAKLTIAVNKDSKA---RTIGDLKTMG 173
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
E +YGIE G + D + LK +S A +Q+++
Sbjct: 174 DEYDNTLYGIEAGAGLTKATKDSAIPK-YGLKNLNFKISSTPAMLAQLKKSTSAGQDIAV 232
Query: 196 LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
W PH + L ++ G E +Y+ R + P +++L++N+ F
Sbjct: 233 TLWRPHWAYGAFPVRDLKDPKKAMGNAE-VIYSFGRPGFEQDFPKVAQLVRNMAFDDNKL 291
Query: 256 NEMMKLI----LNNKQDRQFVGRTMLRTHPDLLKN 286
+++ + ++++ + + D +
Sbjct: 292 SDLEDTMFSADKYGGKNQEKAVEEWISRNNDWVDK 326
>gi|157148218|ref|YP_001455537.1| glycine betaine transporter periplasmic subunit [Citrobacter koseri
ATCC BAA-895]
gi|157085423|gb|ABV15101.1| hypothetical protein CKO_04029 [Citrobacter koseri ATCC BAA-895]
Length = 331
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 42/321 (13%), Positives = 89/321 (27%), Gaps = 37/321 (11%)
Query: 4 ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKL 61
+ A + ++A D V+ + T+ T + S LE LGY
Sbjct: 6 LFATAFATLVSTSAFAADLPGKGVTVQPVQSTITEETFQTLLVSRALE-KLGYTVNKPSE 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V + S+ + W P + A + + GA ++
Sbjct: 65 VDYNVGYTSIASGDATFTAVNWQPLHDDMYAAAGGDKKFYREGVFVTGAAQGYLIDKKTA 124
Query: 122 ALGIKSY---------QDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ I + A + G PG I +
Sbjct: 125 EQYKITNLAQLKDPKIAKIFDTNGDGKADMMGCSPGWGCEAVINHQNKAFDLEKT-VDVS 183
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI-------------- 218
+ A + + P ++ +W P+ ++ + ++
Sbjct: 184 HGNYAAMMADTITRFKEGKPILYYTWTPYWVSDVMKPGKDVVWLQVPFSSLPGEQKDIDT 243
Query: 219 -------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQF 271
GF +++ V + +K P ++L +K +A N ++ K
Sbjct: 244 KLPNGANYGFPVNTMHIVANKAWAEKNPAAAKLFAIMKVPLADINAQNAMMHEGKSSEAD 303
Query: 272 V---GRTMLRTHPDLLKNWLI 289
V ++ H W+
Sbjct: 304 VQGHVDGWIKAHQQQFDGWVK 324
>gi|170765609|ref|ZP_02900420.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Escherichia albertii TW07627]
gi|170124755|gb|EDS93686.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Escherichia albertii TW07627]
Length = 330
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 42/320 (13%), Positives = 94/320 (29%), Gaps = 36/320 (11%)
Query: 4 ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI-KL 61
+ A + ++A D V + T+ T + S LE LGY N
Sbjct: 6 LFATAFATLISTQTFATDLPGKGITVNPVQSTITEETFQTLLVSRALE-KLGYTVNQASE 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V + SL + W P + + + GA ++
Sbjct: 65 VDYNVGYTSLASGDATFTAVNWTPLHDNMYKAAGGDKKFYREGIFVNGAAQGYLIDKKTA 124
Query: 122 ALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ + + A + G PG I + +
Sbjct: 125 DQYKITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGWGCEGAINYQLAAYDLT-NTVTHN 183
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEEI---------- 218
+ + A + + P + +W P+ ++++ ++ +L
Sbjct: 184 QGNYAAMMADTISRYKEGKPVFYYTWTPYWVSNELKPGKDVVWLQVPFSALPGDKNADTK 243
Query: 219 ------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
GF ++++ V + +K P ++L ++ VA N ++ + K +
Sbjct: 244 LPNGANYGFPVSTIHIVANKAWAEKNPAAAKLFAIMQLPVADINAQNAIMHDGKASESDI 303
Query: 273 ---GRTMLRTHPDLLKNWLI 289
++ H W+
Sbjct: 304 QGHVDGWIKAHQQQFDGWVN 323
>gi|109947293|ref|YP_664521.1| osmoprotection protein [Helicobacter acinonychis str. Sheeba]
gi|109714514|emb|CAJ99522.1| osmoprotection protein [Helicobacter acinonychis str. Sheeba]
Length = 551
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 35/293 (11%), Positives = 84/293 (28%), Gaps = 29/293 (9%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL-- 62
+ + L L + R P+ A ++ + S++LE+
Sbjct: 267 VFLFLLLASILWLVPRSVIEEKPLVVAAKPSSEQYILGEILSLLLEKH-HIPVKRVFGIG 325
Query: 63 -AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP--------------YLEEGSIKLVAENL 107
+L D+++ Y + + Y +E ++ V
Sbjct: 326 GGTMNIHPALIRGDFDLYVEYTGTAWVNTLKNPLTQKVDFETIKRRYEKEFNLLWVGLLG 385
Query: 108 QGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFSL 166
Y LA++ + + + +G E E ++ +F
Sbjct: 386 FNNTYSLAISKEDAQKY--AVETFSDLAFHSPNFDFGAEFDFFEREDAFKGLVKAYRF-- 441
Query: 167 KGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV 226
+ + + ++ + +L++ L +
Sbjct: 442 ----HFRSLHEMDINLRYKSFESHKINALDVFTTDAQIKELDLKVLRDDKGFF--PNYQA 495
Query: 227 YTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
V+R + + K P + +L+ IK S ++ + K+ Q V + L
Sbjct: 496 GIVIRKEIVKKYPKVLEILEKIKISDEKMQDLNYQVEVLKKSPQIVAKDFLEN 548
>gi|110806688|ref|YP_690208.1| glycine betaine transporter periplasmic subunit [Shigella flexneri
5 str. 8401]
gi|110616236|gb|ABF04903.1| high-affinity transport system for glycine betaine and proline
[Shigella flexneri 5 str. 8401]
Length = 330
Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats.
Identities = 42/320 (13%), Positives = 95/320 (29%), Gaps = 36/320 (11%)
Query: 4 ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKL 61
+ A + ++A D V + T+ T + S LE LGY
Sbjct: 6 LFATAFATLISTQTFAADLPGKGITVNPVQSTITEETFQTLLVSRALE-KLGYTVNKPSE 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V + SL + W P + + + GA ++
Sbjct: 65 VDYNVGYTSLASGDATFTAVNWTPLHDNMYEAAGGDKKFYREGVFVNGAAQGYLIDKKTA 124
Query: 122 ALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ + + A + G PG I + + +
Sbjct: 125 DQYKITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGWGCEGAINHQLAAYELT-NTVTHN 183
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEEI---------- 218
+ + A + I + P + +W P+ ++++ ++ +L
Sbjct: 184 QGNYAAMMADIISRYKEGKPVFYYTWTPYWVSNELKPGKDVVWLQVPFSALPGDKNADTK 243
Query: 219 ------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
GF ++++ V + +K P ++L ++ VA N ++ + K +
Sbjct: 244 LPNGANYGFPVSTMHIVANKAWTEKNPAAAKLFAIMQLPVADINAQNAIMHDGKASEGDI 303
Query: 273 ---GRTMLRTHPDLLKNWLI 289
++ H W+
Sbjct: 304 QGHVDGWIKAHQQQFDGWVN 323
>gi|313836839|gb|EFS74553.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL037PA2]
Length = 339
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 53/275 (19%), Positives = 95/275 (34%), Gaps = 12/275 (4%)
Query: 17 SYARDADSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKG 75
+ A AD + W + AT + +LE+ GYK IK + L
Sbjct: 63 TTAMKADGKKDITIGAFNGWDESFATAGIMKNVLEKD-GYKVTIKGFDAGPGYAGLVAGD 121
Query: 76 IDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK 135
ID+ W P + +K + AK + VN A K+ D+
Sbjct: 122 IDLLTDTWLPITHADYVKRYGD-KMKSLGCWYDNAKLTIVVNKDSKA---KTIGDLKSIG 177
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
E G +YGIE G + + L +S A SQ+++
Sbjct: 178 DEYGNTLYGIEAGAGLTKVTQQSAIPK-YGLNNLSFKISSTPAMLSQLKKAADAKRDIAV 236
Query: 196 LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
W PH I L ++ G E +Y+ RS + P ++L++N+ F
Sbjct: 237 TLWRPHWAYGAFPIRDLKDPKKAMGDAE-VIYSFARSGFEQDFPKAAQLMRNMAFDDKTL 295
Query: 256 NEMMKLI----LNNKQDRQFVGRTMLRTHPDLLKN 286
+++ ++ ++++ + D +
Sbjct: 296 SDLEDIMFSADKYGGKNQEKAVAEWTSRNEDWVDK 330
>gi|291618548|ref|YP_003521290.1| ProX [Pantoea ananatis LMG 20103]
gi|291153578|gb|ADD78162.1| ProX [Pantoea ananatis LMG 20103]
Length = 332
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 45/332 (13%), Positives = 92/332 (27%), Gaps = 40/332 (12%)
Query: 1 MYKIL-AVCLFLTTFSISYARDAD---SCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
M K L A L TFS S+A AD V+ + + T + S LE LGY
Sbjct: 1 MRKTLPAAVAILATFSASHAFAADLPGKGITVKPVQSTIAEETFQTLLVSRGLE-KLGYT 59
Query: 57 TN-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
+ V + ++ + W P + + + GA
Sbjct: 60 VEKPSEVDYNVAYTTIASGDATFLATNWRPLHDDMYKAAGGSQAFYREGTYVSGAAQGYL 119
Query: 116 VNDVGFALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSL 166
++ + + + A + G PG I S
Sbjct: 120 IDKKTAEKYHITNIAQLKDPKIARLFDSNGDGKADMTGCTPGWGCEAVINHQNTAYGLS- 178
Query: 167 KGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEE----- 217
+ A + + P ++ +W P+ ++ ++ +L
Sbjct: 179 NTVTANMGNYSAMIADTLARFKQGKPVLYYTWTPYWLSDVLKPGRDVVWLQVPFSSLPGE 238
Query: 218 ------------ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNN 265
GF +++ V + +K P ++L + + N +
Sbjct: 239 QKGVDTKLANGANYGFPVNTMHIVANKAWAEKNPAAAKLFAEMTLPIGDINAENAAMHAG 298
Query: 266 KQDRQFV---GRTMLRTHPDLLKNWLIGVTTF 294
+ + + ++ H W+
Sbjct: 299 QNSEEDINRHVDGWIKGHQAQFDKWINDARAA 330
>gi|289428710|ref|ZP_06430393.1| ABC transporter, substrate-binding protein, QAT family
[Propionibacterium acnes J165]
gi|289158108|gb|EFD06328.1| ABC transporter, substrate-binding protein, QAT family
[Propionibacterium acnes J165]
gi|313807927|gb|EFS46408.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL087PA2]
gi|313819713|gb|EFS57427.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL046PA2]
gi|313823585|gb|EFS61299.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL036PA2]
gi|313825909|gb|EFS63623.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL063PA1]
gi|314962060|gb|EFT06161.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL002PA2]
gi|314986497|gb|EFT30589.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL005PA2]
gi|314990856|gb|EFT34947.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL005PA3]
Length = 335
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 49/275 (17%), Positives = 97/275 (35%), Gaps = 12/275 (4%)
Query: 17 SYARDADSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKG 75
+ + AD + W + AT + +LE+ GYK IK + L
Sbjct: 59 TTSMKADGKKDITIGAFNGWDESFATAGIMKNVLEKD-GYKVTIKGFDAGPGYAGLVAGD 117
Query: 76 IDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK 135
ID+ W P + ++ + AK +AVN A ++ D+
Sbjct: 118 IDLLTDGWLPVTHADYVKRYGD-KMENLGCWYDNAKLTIAVNKDSKA---RTIGDLKTMG 173
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
E +YGIE G + D + LK +S A +Q+++
Sbjct: 174 DEYDNTLYGIEAGAGLTKATKDSAIPK-YGLKNLNFKISSTPAMLAQLKKSTSAGQDIAV 232
Query: 196 LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
W PH + L ++ G E +Y+ R + P +++L++N+ F
Sbjct: 233 TLWRPHWAYGAFPVRDLKDPKKAMGNAE-VIYSFGRPGFEQDFPKVAQLVRNMAFDDNKL 291
Query: 256 NEMMKLI----LNNKQDRQFVGRTMLRTHPDLLKN 286
+++ + ++++ + + D +
Sbjct: 292 SDLEDTMFSADKYGGKNQEKAVEEWISRNNDWVDK 326
>gi|221311331|ref|ZP_03593178.1| glycine betaine/carnitine/choline ABC transporter
(osmoprotectant-binding protein) [Bacillus subtilis
subsp. subtilis str. 168]
gi|221315658|ref|ZP_03597463.1| glycine betaine/carnitine/choline ABC transporter
(osmoprotectant-binding protein) [Bacillus subtilis
subsp. subtilis str. NCIB 3610]
gi|221320574|ref|ZP_03601868.1| glycine betaine/carnitine/choline ABC transporter
(osmoprotectant-binding protein) [Bacillus subtilis
subsp. subtilis str. JH642]
gi|221324858|ref|ZP_03606152.1| glycine betaine/carnitine/choline ABC transporter
(osmoprotectant-binding protein) [Bacillus subtilis
subsp. subtilis str. SMY]
Length = 305
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 32/306 (10%), Positives = 77/306 (25%), Gaps = 33/306 (10%)
Query: 1 MYKI--LAVCLFLTTFSISYARDA----DSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
M KI L + + S ++ T+ M + ++E
Sbjct: 3 MTKIKWLGAFALVFVMLLGGCSLPGLGGASDDTIKIGAQSMTESEIVANMIAQLIEHDTD 62
Query: 55 YKTNIKL--LAVPVTFRSLKNKGIDIFMGYW---------------YPSLEKFIAPYLEE 97
T + + V +++ IDI + P I +
Sbjct: 63 LNTALVKNLGSNYVQHQAMLGGDIDISATRYSGTDLTSTLGKEAEKDPKKALNIVQNEFQ 122
Query: 98 GSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILD 157
+ G A + ++ KK G++ +
Sbjct: 123 KRFSYKWFDSYGFDNTYAFTVTKKFAEKEHINTVSDLKKNASQYKLGVDNAWLKRKG--- 179
Query: 158 MINNNKFSLKGFRLIEAS-ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ K + + + + +N L++ ++ L
Sbjct: 180 --DGYKGFVSTYGFEFGTTYPMQIGLVYDAVKNGKMDAVLAYSTDGRIKAYDLKILKD-- 235
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F V+ L + P + ++ + + E+ + ++ V +
Sbjct: 236 DKRFFPPYDCSPVIPEKVLKEHPELEGVINKLIGQIDTETMQELNYEVDGKLKEPSVVAK 295
Query: 275 TMLRTH 280
L H
Sbjct: 296 EFLEKH 301
>gi|295131024|ref|YP_003581687.1| ABC transporter, substrate-binding protein, QAT family
[Propionibacterium acnes SK137]
gi|291377254|gb|ADE01109.1| ABC transporter, substrate-binding protein, QAT family
[Propionibacterium acnes SK137]
gi|314976671|gb|EFT20766.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL045PA1]
gi|314984310|gb|EFT28402.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL005PA1]
gi|327328379|gb|EGE70141.1| ABC-type glycine betaine transport, permease protein
[Propionibacterium acnes HL096PA2]
gi|327444164|gb|EGE90818.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL043PA2]
gi|328760037|gb|EGF73617.1| ABC-type glycine betaine transport, permease protein
[Propionibacterium acnes HL099PA1]
Length = 335
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 49/275 (17%), Positives = 97/275 (35%), Gaps = 12/275 (4%)
Query: 17 SYARDADSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKG 75
+ + AD + W + AT + +LE+ GYK IK + L
Sbjct: 59 TTSMKADGKKDITIGAFNGWDESFATAGIMKNVLEKD-GYKVTIKGFDAGPGYAGLVAGD 117
Query: 76 IDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK 135
ID+ W P + ++ + AK +AVN A ++ D+
Sbjct: 118 IDLLTDGWLPVTHADYVKRYGD-KMENLGCWYDNAKLTIAVNKDSKA---RTIGDLKTMG 173
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
E +YGIE G + D + LK +S A +Q+++
Sbjct: 174 DEYDNTLYGIEAGAGLTKATKDSAIPK-YGLKNLNFKISSTPAMLAQLKKSTSAGQDIAV 232
Query: 196 LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
W PH + L ++ G E +Y+ R + P +++L++N+ F
Sbjct: 233 TLWRPHWAYGAFPVRDLKDPKKAMGNAE-VIYSFGRPGFEQDFPKVAQLVRNMAFDDNKL 291
Query: 256 NEMMKLI----LNNKQDRQFVGRTMLRTHPDLLKN 286
+++ + ++++ + + D +
Sbjct: 292 SDLEDTMFSADKYGGKNQEKAVEEWISRNNDWVDK 326
>gi|114562995|ref|YP_750508.1| glycine betaine transporter periplasmic subunit [Shewanella
frigidimarina NCIMB 400]
gi|114334288|gb|ABI71670.1| Substrate-binding region of ABC-type glycine betaine transport
system [Shewanella frigidimarina NCIMB 400]
Length = 344
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 44/336 (13%), Positives = 90/336 (26%), Gaps = 50/336 (14%)
Query: 1 MYKILAVCLFLTTFSISYAR-----DADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
+ K++ A V+ A W A+ LE LGY
Sbjct: 3 IKKVIMGVALAAMTMTGSAALADNHQPGEGVTVKPARATWDTGFFQEALVRRGLET-LGY 61
Query: 56 KTN-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
K L+ P+ ++++ +D + W+P+ + + + K+ G
Sbjct: 62 DVEKPKDLSNPIFYKTVTLGDVDYWTNGWFPNHDDQMPKGFYDKGEKVGFVVKAGGLQGY 121
Query: 115 AVNDVGFALGIKSYQDIAKYKK---------ELGAKIYGIEPGNEGNQRILDMINNNKFS 165
V+ + + K + + A + PG + I ++
Sbjct: 122 LVSKKEADKYNITSLEDFKRPEVKKAFDTNGDGKADLTACPPGWGCEKIISHHMDVYDLK 181
Query: 166 LKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE-------- 217
+ AS A + +N P F +W P+ L
Sbjct: 182 DA-INPVTASYAAGMASAMAGYKNGGPIFFYTWAPNWTIFKLKPGKDVVWINVPEIKPTK 240
Query: 218 ----------------------ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
GF + + V + P + + ++
Sbjct: 241 AQSSAVERMTVNGIEGAVSDPVKLGFVVSDIQIVANKKFTKHNPAARKFFEVFTVPLSDI 300
Query: 256 NEMMKLILNNKQDRQFV---GRTMLRTHPDLLKNWL 288
NE + ++ Q + + + D WL
Sbjct: 301 NEQNTRMNEGEKSTQDIQGHVDEWITKNQDKWNGWL 336
>gi|51597276|ref|YP_071467.1| glycine betaine transporter periplasmic subunit [Yersinia
pseudotuberculosis IP 32953]
gi|153950715|ref|YP_001400040.1| glycine betaine transporter periplasmic subunit [Yersinia
pseudotuberculosis IP 31758]
gi|186896380|ref|YP_001873492.1| glycine betaine transporter periplasmic subunit [Yersinia
pseudotuberculosis PB1/+]
gi|51590558|emb|CAH22199.1| ABC transporter, periplasmic proline/glycine/betaine-binding
protein proX [Yersinia pseudotuberculosis IP 32953]
gi|152962210|gb|ABS49671.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Yersinia pseudotuberculosis IP
31758]
gi|186699406|gb|ACC90035.1| Substrate-binding region of ABC-type glycine betaine transport
system [Yersinia pseudotuberculosis PB1/+]
Length = 334
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 41/319 (12%), Positives = 89/319 (27%), Gaps = 35/319 (10%)
Query: 4 ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKL 61
I A+ L S A + V+ + ++ T++ + LE LGY K
Sbjct: 6 IWALALTTLISSQLSAAELPGKGITVQPLQSTISEETFQTSLVNKALE-KLGYDVQPTKE 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V + S+ W P + ++G ++
Sbjct: 65 VDYNVAYSSIAAGDATYLAVNWVPLHNDQYNAAGGDAKFYRQGNYIEGLAQGYLIDKKTA 124
Query: 122 ALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ + + A + G PG I I S
Sbjct: 125 DQYNITNIAQLKDPKIAKLFDANNDGKADLTGCNPGWGCEAPINHQIKAYGLSDT-VTHN 183
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHP----INSDLNIHYLPGGEE----------- 217
+ + A + + P ++ +W P+ + ++ +L
Sbjct: 184 QGNYAAMIADTITRYKEGKPILYYTWTPYWVSDVLVPGRDVVWLQVPFSSLPDKTIDTQL 243
Query: 218 ----ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI---LNNKQDRQ 270
GF + ++ V + + P ++L +K S+ N + ++ D +
Sbjct: 244 SNGANYGFPPSVMHIVANKKWAEANPAAAKLFSIMKLSINDVNAQNMRMHSGESSDADIE 303
Query: 271 FVGRTMLRTHPDLLKNWLI 289
+ H W+
Sbjct: 304 RHVNGWINAHQATFDGWVK 322
>gi|308175120|ref|YP_003921825.1| choline ABC transporter binding protein [Bacillus amyloliquefaciens
DSM 7]
gi|307607984|emb|CBI44355.1| choline ABC transporter (binding protein) [Bacillus
amyloliquefaciens DSM 7]
Length = 305
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 36/302 (11%), Positives = 81/302 (26%), Gaps = 29/302 (9%)
Query: 2 YKILAVCLFLTTFSISYAR----DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
K L + + A S ++ T+ +M ++E KT
Sbjct: 6 KKRLLAFACIGILLLGGCSLPGLSAASEDTIKIGAQSMTESEIIASMLGQMIEHHSDLKT 65
Query: 58 NIK--LLAVPVTFRSLKNKGIDIFMGYWY---------------PSLEKFIAPYLEEGSI 100
+ L + V +SL N IDI + P + +
Sbjct: 66 TVIKNLGSNAVQQQSLINGDIDIAATRYTGDALTGTLRMEPEKDPDKALRLVQREFQNRY 125
Query: 101 KLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN 160
+ + G G + ++ KKE +G++ +
Sbjct: 126 DMKWFDSYGFDNTYVFTVSGQLARKYHLETVSDVKKEASHLKFGVDNYWMKLRGNGYQDF 185
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISG 220
+ + E + + ++ + L++ + L +
Sbjct: 186 MKTYGMAF----EGTYPMQIGLVYDALKSRKMDIALAYSTDGRIIAYGLKTLKD--DKRF 239
Query: 221 FGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
F VV L + P + ++ + + +M + ++ V + L
Sbjct: 240 FPPYDCSPVVPDRVLKEHPELEGVINQMIGAIDTKMMQKMNYEVDGQLKEPSVVAKEYLE 299
Query: 279 TH 280
H
Sbjct: 300 KH 301
>gi|194015668|ref|ZP_03054284.1| glycine betaine/carnitine/choline-binding protein
(Osmoprotectant-binding protein) [Bacillus pumilus ATCC
7061]
gi|194013072|gb|EDW22638.1| glycine betaine/carnitine/choline-binding protein
(Osmoprotectant-binding protein) [Bacillus pumilus ATCC
7061]
Length = 305
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 44/297 (14%), Positives = 90/297 (30%), Gaps = 27/297 (9%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--L 61
+LA CL L + S +R +T+ M S I+E KT I L
Sbjct: 12 LLAGCLLLISGCSLPGLAGSSGNTLRVGAQNFTESEIMAYMVSEIIEHYTDKKTTIVKNL 71
Query: 62 LAVPVTFRSLKNKGIDIFMGYWY---------------PSLEKFIAPYLEEGSIKLVAEN 106
+ V ++++N IDI + P I + +
Sbjct: 72 GSNTVQQKAMENGDIDISATRYTGTDLTSTLGMDAEKDPERAMEIVQKEFKKRYDYKWFD 131
Query: 107 LQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSL 166
G A + ++ KK +G++ + + + +
Sbjct: 132 SYGFDNTYAFAVTQKMAKENKLETVSDLKKNAKNYRFGVDNIW-----LKKKGDGYEGFV 186
Query: 167 KGFRLIEAS-ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEAS 225
K + + S + +N + L++ ++ L + F
Sbjct: 187 KTYGIEFGSTYPMQIGLVYDALKNEKMDIVLAYSTDGRIKAYDLKILKD--DKRFFPPYD 244
Query: 226 VYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
VV L + P + +++ + K + E+ + Q+ V + L+ H
Sbjct: 245 ASPVVPEKVLKENPGLDKVINRLIGKINTEQMQELNYQVDGELQEPATVAKNFLKKH 301
>gi|329734591|gb|EGG70902.1| glycine betaine/carnitine/choline-binding protein [Staphylococcus
epidermidis VCU045]
Length = 314
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 32/309 (10%), Positives = 80/309 (25%), Gaps = 35/309 (11%)
Query: 1 MYK--------ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEI 52
M K I + L+ S+ D ++ V+ T ++ M +++E
Sbjct: 1 MKKYLNYTLILIALSLIVLSGCSLPGLGDGNAKDDVKITTTETSETKIIGHMEKLLIEHE 60
Query: 53 LGYKTNIKL----LAVPVTFRSLKNKGIDIFMGYWY---------------PSLEKFIAP 93
K L + + +L+ ++ + P
Sbjct: 61 TDGKIKPTLIGNLGSSIIQHNALQRGDANMSAVRYTGTELTSVLAAKPTKDPDKAMSETQ 120
Query: 94 YLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQ 153
L + + G A + ++ +K G++
Sbjct: 121 RLFKKKYDEKYYHSLGFANTYAFMVTKETAKKYHLKKVSDLEKYKDELRLGMDTQWMNRA 180
Query: 154 RILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLP 213
+ K +++ + +NN V + + + ++ L
Sbjct: 181 GDGYSAFVKDYGFKF----DSARPMQIGLVYDALKNNKLDVAVGYSTDGRIAAYDLKILE 236
Query: 214 GGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQF 271
+ + + P I + LK + K S ++ ++
Sbjct: 237 DDRKFF--PPYDGSPLANEQLIKDNPEIDKALKKLEGKISTEEMQKLNYEADGKGKEPAV 294
Query: 272 VGRTMLRTH 280
+ L+ H
Sbjct: 295 IAEEYLKKH 303
>gi|282875149|ref|ZP_06284022.1| ABC transporter, substrate-binding protein, QAT family
[Staphylococcus epidermidis SK135]
gi|281295914|gb|EFA88435.1| ABC transporter, substrate-binding protein, QAT family
[Staphylococcus epidermidis SK135]
Length = 314
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 32/309 (10%), Positives = 80/309 (25%), Gaps = 35/309 (11%)
Query: 1 MYK--------ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEI 52
M K I + L+ S+ D ++ V+ T ++ M +++E
Sbjct: 1 MKKYLNYPLILIALSLIVLSGCSLPGLGDGNAKDDVKITTTETSETKIIGHMEKLLIEHE 60
Query: 53 LGYKTNIKL----LAVPVTFRSLKNKGIDIFMGYWY---------------PSLEKFIAP 93
K L + + +L+ ++ + P
Sbjct: 61 TDGKIKPTLIGNLGSSIIQHNALQRGDANMSAVRYTGTELTSVLAAKPTKDPDKAMSETQ 120
Query: 94 YLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQ 153
L + + G A + ++ +K G++
Sbjct: 121 RLFKKKYDEKFYHSLGFANTYAFMVTKETAKKYHLEKVSDLEKYKDELRLGMDTQWMNRA 180
Query: 154 RILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLP 213
+ K +++ + +NN V + + + ++ L
Sbjct: 181 GDGYPAFVKDYGFKF----DSARPMQIGLVYDALKNNKLDVAVGYSTDGRIAAYDLKILE 236
Query: 214 GGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQF 271
+ + + P I + LK + K S ++ ++
Sbjct: 237 DDRKFF--PPYDGSPLANEQLIKNNPEIDKALKKLEGKISTEEMQKLNYEADGKGKEPAV 294
Query: 272 VGRTMLRTH 280
+ L+ H
Sbjct: 295 IAEEYLKKH 303
>gi|325685677|gb|EGD27757.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Lactobacillus delbrueckii
subsp. lactis DSM 20072]
Length = 309
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 35/288 (12%), Positives = 73/288 (25%), Gaps = 25/288 (8%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFR 69
+ + + VR A T+ + + ++ LGYKT + + V +
Sbjct: 20 SGCGFPGLGSSGNDGTVRIASQTSTESQIMANIIAELINHELGYKTTLVNNLGSSTVVHQ 79
Query: 70 SLKNKGIDIFMGYWY---------------PSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
++ DI + + I + G
Sbjct: 80 AMVRNDADISAARYTGTEITGTLGMNPVKNSAKATAIVKREFKKRYDQTWYPSYGFSDTY 139
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
A + ++ KK G++ + + R+
Sbjct: 140 AFMVTQKEAKEDNLNTVSDLKKVAPQYNAGVDSSWMNRKGDGYSDFTKAYGFDFKRVYP- 198
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDY 234
+ N L + N+ L + VV +
Sbjct: 199 ---MQIGLVYDAVEANRMQTVLGYSTDGRIRSYNLKVLKDDKNFF--PPYQCSLVVNNSL 253
Query: 235 LDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
L K P + LL + K ++ E+ + + + V + L H
Sbjct: 254 LKKYPKLKPLLHRLDGKINLKTMQELNYQVDDQLLEPNVVAQKFLAKH 301
>gi|134301038|ref|YP_001114534.1| glycine betaine ABC transporter substrate-binding protein
[Desulfotomaculum reducens MI-1]
gi|134053738|gb|ABO51709.1| Substrate-binding region of ABC-type glycine betaine transport
system [Desulfotomaculum reducens MI-1]
Length = 296
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 33/161 (20%), Positives = 69/161 (42%), Gaps = 4/161 (2%)
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
++ KI GI+PG + I + + ++E S A + + + N P +
Sbjct: 37 DQVKHKIIGIDPGAGLMKATDKAIQEYELKD--WEVVEGSSAAMTAALAKAYENKEPIIV 94
Query: 196 LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
W PH + ++ YL +++ G E ++T+VR P+ +LL N + A
Sbjct: 95 TGWTPHWKFAKYDLKYLEDPKKVYGDAEF-IHTIVRKGLKGDHPSAYKLLDNFNWQPADM 153
Query: 256 NEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDG 296
+M + ++ + ++ + + + WL G++T G
Sbjct: 154 ESVMVAM-QEGKEPAAAAKDWIKNNEETVNKWLEGISTVQG 193
Score = 72.2 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 2/104 (1%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYW 83
+ A W A+T + ++ LE LGY+ + + + L + D + W
Sbjct: 192 QGDKITLAYVAWDSEIASTNVVAIALE-KLGYEVELSQVEAGPMWAGLASGDADAIVAAW 250
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKS 127
P+ EG + + NL+G + L V I+
Sbjct: 251 LPTTHADYYKE-FEGKFEDLGPNLEGTRIGLVVPAYMDINSIED 293
>gi|22125121|ref|NP_668544.1| glycine betaine transporter periplasmic subunit [Yersinia pestis
KIM 10]
gi|45442232|ref|NP_993771.1| glycine betaine transporter periplasmic subunit [Yersinia pestis
biovar Microtus str. 91001]
gi|108808367|ref|YP_652283.1| glycine betaine transporter periplasmic subunit [Yersinia pestis
Antiqua]
gi|108811294|ref|YP_647061.1| glycine betaine transporter periplasmic subunit [Yersinia pestis
Nepal516]
gi|149365460|ref|ZP_01887495.1| glycine betaine transporter subunit; periplasmic-binding component
of ABC superfamily [Yersinia pestis CA88-4125]
gi|167468717|ref|ZP_02333421.1| glycine betaine transporter periplasmic subunit [Yersinia pestis
FV-1]
gi|218929722|ref|YP_002347597.1| glycine betaine transporter periplasmic subunit [Yersinia pestis
CO92]
gi|229838198|ref|ZP_04458357.1| glycine betaine transporter subunit; periplasmic-binding component
of ABC superfamily [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229895456|ref|ZP_04510628.1| glycine betaine transporter subunit; periplasmic-binding component
of ABC superfamily [Yersinia pestis Pestoides A]
gi|229898690|ref|ZP_04513835.1| glycine betaine transporter subunit; periplasmic-binding component
of ABC superfamily [Yersinia pestis biovar Orientalis
str. India 195]
gi|229901539|ref|ZP_04516661.1| glycine betaine transporter subunit; periplasmic-binding component
of ABC superfamily [Yersinia pestis Nepal516]
gi|294504444|ref|YP_003568506.1| glycine betaine-binding periplasmic protein [Yersinia pestis
Z176003]
gi|21957979|gb|AAM84795.1|AE013725_8 solute-binding periplasmic protein of high-affinity glycine
betaine/proline ABC transporterhigh-affinity ABC
transport system for glycine betaine and proline
[Yersinia pestis KIM 10]
gi|45437096|gb|AAS62648.1| glycine betaine-binding periplasmic protein [Yersinia pestis biovar
Microtus str. 91001]
gi|108774942|gb|ABG17461.1| glycine betaine-binding periplasmic protein [Yersinia pestis
Nepal516]
gi|108780280|gb|ABG14338.1| glycine betaine-binding periplasmic protein [Yersinia pestis
Antiqua]
gi|115348333|emb|CAL21266.1| glycine betaine-binding periplasmic protein [Yersinia pestis CO92]
gi|149291873|gb|EDM41947.1| glycine betaine transporter subunit; periplasmic-binding component
of ABC superfamily [Yersinia pestis CA88-4125]
gi|229681468|gb|EEO77562.1| glycine betaine transporter subunit; periplasmic-binding component
of ABC superfamily [Yersinia pestis Nepal516]
gi|229688238|gb|EEO80309.1| glycine betaine transporter subunit; periplasmic-binding component
of ABC superfamily [Yersinia pestis biovar Orientalis
str. India 195]
gi|229694564|gb|EEO84611.1| glycine betaine transporter subunit; periplasmic-binding component
of ABC superfamily [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229701611|gb|EEO89638.1| glycine betaine transporter subunit; periplasmic-binding component
of ABC superfamily [Yersinia pestis Pestoides A]
gi|262362565|gb|ACY59286.1| glycine betaine-binding periplasmic protein [Yersinia pestis
D106004]
gi|294354903|gb|ADE65244.1| glycine betaine-binding periplasmic protein [Yersinia pestis
Z176003]
gi|320016146|gb|ADV99717.1| glycine betaine transporter subunit; periplasmic-binding component
of ABC superfamily [Yersinia pestis biovar Medievalis
str. Harbin 35]
Length = 334
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 41/319 (12%), Positives = 89/319 (27%), Gaps = 35/319 (10%)
Query: 4 ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKL 61
I A+ L S A + V+ + ++ T++ + LE LGY K
Sbjct: 6 IWALALTTLISSQLSAAELPGKGITVQPLQSTISEETFQTSLVNKALE-KLGYDVQPTKE 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V + S+ W P + ++G ++
Sbjct: 65 VDYNVAYSSIAAGDATYLAVNWVPLHNDQYNAAGGDAKFYRQGNYIEGLAQGYLIDKKTA 124
Query: 122 ALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ + + A + G PG I I S
Sbjct: 125 DQYNITNVAQLKDPKIAKLFDANNDGKADLTGCNPGWGCEAPINHQIKAYGLSDT-VTHN 183
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHP----INSDLNIHYLPGGEE----------- 217
+ + A + + P ++ +W P+ + ++ +L
Sbjct: 184 QGNYAAMIADTITRYKEGKPILYYTWTPYWVSDVLVPGRDVVWLQVPFSSLPDKTIDTQL 243
Query: 218 ----ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI---LNNKQDRQ 270
GF + ++ V + + P ++L +K S+ N + ++ D +
Sbjct: 244 SNGANYGFPPSVMHIVANKKWAEANPAAAKLFSIMKLSINDVNAQNMRMHSGESSDADIE 303
Query: 271 FVGRTMLRTHPDLLKNWLI 289
+ H W+
Sbjct: 304 RHVNGWINAHQATFDGWVK 322
>gi|163743647|ref|ZP_02151023.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Phaeobacter gallaeciensis
2.10]
gi|161383118|gb|EDQ07511.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Phaeobacter gallaeciensis
2.10]
Length = 289
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 33/292 (11%), Positives = 87/292 (29%), Gaps = 35/292 (11%)
Query: 29 RFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLE 88
W + T + ++LE+ LG ++ + P+ F ++ + + W P+
Sbjct: 2 VIGVPNWPSVRVTANVLKIVLEDNLGLDVELQNGSNPIVFEAMDTGAMQVHPEVWLPNQA 61
Query: 89 KFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI---------KSYQDIAKYKKELG 139
+++E + N A + V +
Sbjct: 62 NLHNTFVKEKGTVAMNPNGIPADQAMCVTKGTAERTGIKSLSELSDPDMAANFDSDGDGM 121
Query: 140 AKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWE 199
+I+ G + + L E E + +++ N VF +
Sbjct: 122 GEIWIGAAGWASTNVEKIRAKSYGYDQT-MTLKEMDETLALAEVDAATDQNTNVVFFCYT 180
Query: 200 PHPINSDLNIHYLPGGEE----------------------ISGFGEASVYTVVRSDYLDK 237
PH + ++ L + +A ++ ++ +
Sbjct: 181 PHHMFQLYDLVQLEEPPHDPAKWNVAQPTDDPNWLENSSAAMAWDKAYLHIHYQAAMDES 240
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+ +L + + + M+ ++ ++ D + R + + D + +WL
Sbjct: 241 ---AAAVLSKVNLTSDQVSAMVYALIVDEMDAEVFARKWVEENADQVDSWLN 289
>gi|160875188|ref|YP_001554504.1| glycine betaine transporter periplasmic subunit [Shewanella baltica
OS195]
gi|160860710|gb|ABX49244.1| Substrate-binding region of ABC-type glycine betaine transport
system [Shewanella baltica OS195]
gi|315267384|gb|ADT94237.1| Substrate-binding region of ABC-type glycine betaine transport
system [Shewanella baltica OS678]
Length = 344
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 46/336 (13%), Positives = 94/336 (27%), Gaps = 50/336 (14%)
Query: 1 MYKILAVCLFLTTFSISYARDAD-----SCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
+ K++ A AD V+ A W A+ LE LGY
Sbjct: 3 LKKVILGAALAAMTVTGSAALADTLKPGEGITVKPARATWDTGFFQEALVRRGLET-LGY 61
Query: 56 KTN-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
K L P+ ++++ ID + W+P + +E + K+ G
Sbjct: 62 DVEKPKTLVNPIFYKTVTLGDIDYWANGWFPMHNDQLPSNFDEKAEKIGYVIKAGGLGGY 121
Query: 115 AVNDVGFALGIKSYQDIAKYKK---------ELGAKIYGIEPGNEGNQRILDMINNNKFS 165
++ + K + + A + PG + I ++
Sbjct: 122 LISKKEADKYNITSLADFKRPEVKQAFDTNGDAKADLTACPPGWGCEKIITHHMDVYGLK 181
Query: 166 LKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE-------- 217
++A+ A + +N P F +W P+ +
Sbjct: 182 DS-INPVKAAYAAGMASAMAGYKNGGPIFFYTWAPNWTIFKMKPGEDVVWINVPEIKPTK 240
Query: 218 ----------------------ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
GF + + V + + P + + +A
Sbjct: 241 AQSAAVDRMTVKGLEGAVSDPIKLGFVASDIQIVANKKFAKQNPAARKFFEVFTLPLADI 300
Query: 256 NEMMKLILNNKQDRQFV---GRTMLRTHPDLLKNWL 288
NE + + ++ +Q + + + D WL
Sbjct: 301 NEQNTRMNDGEKSKQDIQHHVDGWIAKNQDKWNGWL 336
>gi|313123818|ref|YP_004034077.1| ABC proline/glycine betaine transporter, permease and substrate
binding protein [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
gi|312280381|gb|ADQ61100.1| ABC-type proline/glycine betaine transport system, permease and
substrate binding protein [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
Length = 506
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 47/307 (15%), Positives = 92/307 (29%), Gaps = 39/307 (12%)
Query: 2 YKILAVCLFLTTFSISYARDADS----CTPVRFADTGWTDIAATTAMTSVILE-EILGYK 56
+++ A L + + ++ + V A ++ M ++E + K
Sbjct: 208 FQVTAAVLAIFAIGLGASQLPKAFAPKEEEVVIAGKLGSEPDILINMYKDLIERDNPHVK 267
Query: 57 TNIK--LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL------------------E 96
+K F +LK IDI+ + L+ + E
Sbjct: 268 VTLKNNFGGTNFLFNALKTGKIDIYPEFTGTVLQGLAKKKVATPHDPAKTYQLAKKLMAE 327
Query: 97 EGSIKLVAENLQGAKYMLAVNDVGFA-LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRI 155
E + + Y LAV IKS D+AK L A
Sbjct: 328 EDQLTYLPAMNYQNGYDLAVTKAFAKRHNIKSLSDLAKVDYSLTAAF--DPDFANQQDGY 385
Query: 156 LDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG 215
L + + + + + + + AV + P ++ L
Sbjct: 386 LGLKKEYGLNFRVKTMEP-------ALRYKAIASGKVAVVDGYTTDPQIKQYDLVALKD- 437
Query: 216 EEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVG 273
+ S F ++++ + K P + + L + K + A EM + + V
Sbjct: 438 -DKSFFPPYQGAPLLKNSFAQKHPGVVKSLNKLAGKITEAEMQEMNYKVTVKHESASKVA 496
Query: 274 RTMLRTH 280
R L+ H
Sbjct: 497 RQYLKQH 503
>gi|242243450|ref|ZP_04797895.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Staphylococcus epidermidis
W23144]
gi|242233070|gb|EES35382.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Staphylococcus epidermidis
W23144]
Length = 319
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 29/304 (9%), Positives = 77/304 (25%), Gaps = 31/304 (10%)
Query: 2 YKILAVCLFLTTFSISYA----RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
K L V + T +++ S VR G ++ + M +++E +
Sbjct: 5 KKYLIVLVLCLTVLSGCNLPGLKNSHSDDDVRITSLGTSESQIISHMLRLLIEHDTKGEI 64
Query: 58 NIKL----LAVPVTFRSLKNKGIDIFMGYWY---------------PSLEKFIAPYLEEG 98
L + + ++ + ++ + P +
Sbjct: 65 KPTLINNLGSSTIQHNAVTSGQANMSGTRYTGTDLTGALKEDPIKDPKKAMKATQEGFKK 124
Query: 99 SIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
N G + A+ + ++ +K G++ +
Sbjct: 125 KYNQTFFNSYGFENTYALIVTKETAKKYHLETVSDLEKHAKDLRVGMDSSWMDRKGDGYP 184
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
++ + + + V + + S ++ L
Sbjct: 185 AFKKEYGYSFGTVRP----MQIGLVYDALSSGKLDVAVGYSTDGRISAYDLKVLKDDRRF 240
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
+ L + P + ++K + K S E+ ++ V
Sbjct: 241 F--PPYDASPLASDQLLKEKPELKPIVKKLEGKISTEQMQELNYQADGKGKEPATVAEDF 298
Query: 277 LRTH 280
L+ H
Sbjct: 299 LKKH 302
>gi|324111313|gb|EGC05295.1| PROX Glycine betaine-binding periplasmic protein [Escherichia
fergusonii B253]
Length = 330
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 41/320 (12%), Positives = 93/320 (29%), Gaps = 36/320 (11%)
Query: 4 ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKL 61
+ A + ++A D V + T+ T + S LE LGY
Sbjct: 6 LFATAFATLISTQTFAADLPGKGITVNPVQSTITEETFQTLLVSRALE-KLGYTVNKPSE 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V + SL + W P + + + GA ++
Sbjct: 65 VDYNVGYTSLASGDATFTAVNWTPLHDNMYEAAGGDKKFYREGVFVNGAAQGYLIDKKTA 124
Query: 122 ALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ + + A + G PG I + +
Sbjct: 125 DQYKITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGWGCEGAINHQLAAYDLT-NTVTHN 183
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEEI---------- 218
+ + A + + P + +W P+ ++++ ++ +L
Sbjct: 184 QGNYAAMMADTISRYKEGKPVFYYTWTPYWVSNELKPGKDVVWLQVPFSALPGDKNADTK 243
Query: 219 ------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
GF ++++ V + +K P ++L ++ VA N ++ + K +
Sbjct: 244 LPNGANYGFPVSTMHIVANKAWAEKNPAAAKLFAIMQLPVADINAQNAIMHDGKASEGDI 303
Query: 273 ---GRTMLRTHPDLLKNWLI 289
++ H W+
Sbjct: 304 QGHVDGWIKAHQQQFDGWVN 323
>gi|238796647|ref|ZP_04640153.1| Osmoprotectant transport protein OusBX [Yersinia mollaretii ATCC
43969]
gi|238719378|gb|EEQ11188.1| Osmoprotectant transport protein OusBX [Yersinia mollaretii ATCC
43969]
Length = 332
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 41/322 (12%), Positives = 91/322 (28%), Gaps = 35/322 (10%)
Query: 1 MYKILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN- 58
M K A+ L + A + V+ + ++ T++ + LE LGY
Sbjct: 3 MVKTWALALTTLISTQVSAAELPGKGVSVQPLQSTISEETFQTSLVNKALE-KLGYDVQP 61
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
K + V + S+ W P A + ++G ++
Sbjct: 62 TKEVDYNVAYASIAAGDATYLAVNWEPLHNDQYAAAGGDAKFYRQGNFIEGLAQGYLIDK 121
Query: 119 VGFALGIKSYQD---------IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
+ + + + A + G PG I I S
Sbjct: 122 KTADKYHITNIEQLKDPAIAKLFDANNDGKADLTGCNPGWGCEAPINHQIKAYGLSDT-V 180
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEP----HPINSDLNIHYLPGGEE-------- 217
+ + A + + P ++ +W P + ++ +L
Sbjct: 181 THNQGNYAAMIADTITRYKEGKPIIYYTWTPYWVSDVLVPGRDVVWLQVPFSSLPDKTID 240
Query: 218 -------ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI---LNNKQ 267
GF + ++ V + + P ++L +K + N + ++
Sbjct: 241 TQLSNGANYGFPPSVMHIVANKKWAEANPAAAKLFSIMKLPINDVNAQNMRMHAGESSDA 300
Query: 268 DRQFVGRTMLRTHPDLLKNWLI 289
D + ++ H W+
Sbjct: 301 DIERHVNGWIQAHQATFDGWVN 322
>gi|328907607|gb|EGG27371.1| substrate binding component of glycine/betaine transport system
[Propionibacterium sp. P08]
Length = 335
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 53/275 (19%), Positives = 95/275 (34%), Gaps = 12/275 (4%)
Query: 17 SYARDADSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKG 75
+ A AD + W + AT + +LE+ GYK IK + L
Sbjct: 59 TTAMKADGKKDITIGAFNGWDESFATAGIMKNVLEKE-GYKVTIKGFDAGPGYAGLVAGD 117
Query: 76 IDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK 135
ID+ W P + +K + AK + VN A K+ D+
Sbjct: 118 IDLLTDTWLPITHADYVKRYGD-KMKSLGCWYDNAKLTIVVNKDSKA---KTIGDLKSIG 173
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
E G +YGIE G + + L +S A SQ+++
Sbjct: 174 DEYGNTLYGIEAGAGLTKVTQQSAIPK-YGLNNLSFKISSTPAMLSQLKKAADAKRDIAV 232
Query: 196 LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
W PH I L ++ G E +Y+ RS + P ++L++N+ F
Sbjct: 233 TLWRPHWAYGAFPIRDLKDPKKAMGDAE-VIYSFARSGFEQDFPKAAQLMRNMAFDDKTL 291
Query: 256 NEMMKLI----LNNKQDRQFVGRTMLRTHPDLLKN 286
+++ ++ ++++ + D +
Sbjct: 292 SDLEDIMFSADKYGGKNQEKAVAEWTSRNEDWVDK 326
>gi|217973483|ref|YP_002358234.1| glycine betaine transporter periplasmic subunit [Shewanella baltica
OS223]
gi|217498618|gb|ACK46811.1| Substrate-binding region of ABC-type glycine betaine transport
system [Shewanella baltica OS223]
Length = 344
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 46/336 (13%), Positives = 94/336 (27%), Gaps = 50/336 (14%)
Query: 1 MYKILAVCLFLTTFSISYARDAD-----SCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
+ K++ A AD V+ A W A+ LE LGY
Sbjct: 3 LKKVILGAALAAMTVTGSAALADTLKPGEGITVKPARATWDTGFFQEALVRRGLET-LGY 61
Query: 56 KTN-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
K L P+ ++++ ID + W+P + +E + K+ G
Sbjct: 62 DVEKPKTLVNPIFYKTVTLGDIDYWANGWFPMHNDQLPSNFDEKAEKIGYVIKAGGLGGY 121
Query: 115 AVNDVGFALGIKSYQDIAKYKK---------ELGAKIYGIEPGNEGNQRILDMINNNKFS 165
++ + K + + A + PG + I ++
Sbjct: 122 LISKKEANKYNITSLADFKRPEVKQAFDTNGDGKADLTACPPGWGCEKIITHHMDVYGLK 181
Query: 166 LKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE-------- 217
++A+ A + +N P F +W P+ +
Sbjct: 182 DS-INPVKAAYAAGMASAMAGYKNGGPIFFYTWAPNWTIFKMKPGKDVMWINVPEIKPTK 240
Query: 218 ----------------------ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
GF + + V + + P + + +A
Sbjct: 241 AQSAAVDRMTVKGLEGAVSDPIKLGFVASDIQIVANKKFAKQNPAARKFFEVFTLPLADI 300
Query: 256 NEMMKLILNNKQDRQFV---GRTMLRTHPDLLKNWL 288
NE + + ++ +Q + + + D WL
Sbjct: 301 NEQNTRMNDGEKSKQDIQHHVDGWIAKNQDKWNGWL 336
>gi|319401200|gb|EFV89415.1| choline transport system permease protein opuBB [Staphylococcus
epidermidis FRI909]
Length = 504
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 42/303 (13%), Positives = 89/303 (29%), Gaps = 35/303 (11%)
Query: 2 YKILAVCLFLTTFSISYAR---DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
K+L + I A + A ++ + T M +++EE
Sbjct: 207 KKLLISLGTIVIVIIIAIAVPMAAQKGDKITLAGKLGSEPSIITNMYKILIEEDTDDTVE 266
Query: 59 IK--LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP-----------------YLEEGS 99
+K + F +LK+ ID ++ + L + ++
Sbjct: 267 VKDGMGKTSFLFNALKSDEIDGYLEFTGTVLGELTKEDLKSKKEKDVYQQAKSSLEKKYH 326
Query: 100 IKLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ ++ Y LAV IK+ D+ K + +L N+ +
Sbjct: 327 MTMLKPMKYNNTYALAVKRDFAKKHQIKTIGDLRKVEDKLKPGFTL--EFNDRPDGYKAV 384
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+L + +E + + ++ N+ L +
Sbjct: 385 KKTYHLNLSNVKTMEPKLR------YTAVKKGDINLIDAYSTDAELKQYNMVVLKD--DQ 436
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F + + YL+ P + + L + + + EM + K+D V R
Sbjct: 437 HVFPPYQGAPLFKEKYLNDHPEVKKPLNKLENRITDEEMQEMNYKVTVKKEDPYKVAREY 496
Query: 277 LRT 279
L
Sbjct: 497 LEK 499
>gi|319936800|ref|ZP_08011212.1| ABC glycine betaine transporter permease [Coprobacillus sp. 29_1]
gi|319808068|gb|EFW04640.1| ABC glycine betaine transporter permease [Coprobacillus sp. 29_1]
Length = 517
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 42/301 (13%), Positives = 84/301 (27%), Gaps = 33/301 (10%)
Query: 8 CLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL---LAV 64
+ F+ S + A T+ M +++E+ +
Sbjct: 224 LSAMIVFAASLFYVPHKDKTIHIATKPMTEEFVIGEMLKMLIEQRTDINVELTKGVGGGT 283
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIA----------------PYLEEGSIKLVAENLQ 108
++ + DI+ Y + + Y + + V
Sbjct: 284 SNIHPAMLSGEFDIYPEYTGTAWNFVLKETAFPDEETLYKQLVEKYQVQYQLDWVGLYGF 343
Query: 109 GAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFSLK 167
Y LAV + + + I+G E E + M N F
Sbjct: 344 NNTYGLAVTKELA--NRYNLKSYSDLAAISSQLIFGSEYDFYERDDGYKAMSEANDF--- 398
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
+ + R N V +++ SD I L + F
Sbjct: 399 ---HFKKTVDLDIGLKYDALRKNQVDVIIAFTTDGQLSDSEIVLLED--DQHYFETYYAG 453
Query: 228 TVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLK 285
+VVR L++ P + +L + S M + K++ + V + L++ L +
Sbjct: 454 SVVRQTVLEEYPELKSVLMLMDGLISEKEMATMNYQVEQEKKNDKDVAKAFLQS-KGLWE 512
Query: 286 N 286
Sbjct: 513 E 513
>gi|289426332|ref|ZP_06428075.1| ABC transporter, substrate-binding protein, QAT family
[Propionibacterium acnes SK187]
gi|289153060|gb|EFD01778.1| ABC transporter, substrate-binding protein, QAT family
[Propionibacterium acnes SK187]
gi|313839885|gb|EFS77599.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL086PA1]
gi|314919271|gb|EFS83102.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL050PA1]
gi|314954345|gb|EFS98751.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL027PA1]
gi|314963639|gb|EFT07739.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL082PA1]
gi|315079493|gb|EFT51486.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL053PA2]
gi|315100453|gb|EFT72429.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL046PA1]
gi|327451972|gb|EGE98626.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL092PA1]
gi|327457720|gb|EGF04375.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL083PA2]
gi|328755175|gb|EGF68791.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL087PA1]
Length = 335
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 49/275 (17%), Positives = 97/275 (35%), Gaps = 12/275 (4%)
Query: 17 SYARDADSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKG 75
+ + AD + W + AT + +LE+ GYK IK + L
Sbjct: 59 TTSMKADGKKDITIGAFNGWDESFATAGIMKNVLEKD-GYKVTIKGFDAGPGYAGLVAGD 117
Query: 76 IDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK 135
ID+ W P + ++ + AK +AVN A ++ D+
Sbjct: 118 IDLLTDGWLPVTHADYVKRYGD-KMENLGCWYDNAKLTIAVNKDSKA---RTIGDLKTMG 173
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
E +YGIE G + D + LK +S A +Q+++
Sbjct: 174 DEYDNTLYGIEAGAGLTKATKDSAIPK-YGLKNLNFKISSTPAMLAQLKKSTSAGQDIAV 232
Query: 196 LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
W PH + L ++ G E +Y+ R + P +++L++N+ F
Sbjct: 233 TLWRPHWAYGAFPVRDLKDPKKAMGNAE-VIYSFGRPGFEQDFPKVAQLVRNMAFDDNKL 291
Query: 256 NEMMKLI----LNNKQDRQFVGRTMLRTHPDLLKN 286
+++ + ++++ + + D +
Sbjct: 292 SDLEDTMFSADKYGGKNQEKAVEEWISRNNDWVDK 326
>gi|314966062|gb|EFT10161.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL082PA2]
gi|314981895|gb|EFT25988.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL110PA3]
gi|315090759|gb|EFT62735.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL110PA4]
gi|315095008|gb|EFT66984.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL060PA1]
gi|315104233|gb|EFT76209.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL050PA2]
Length = 339
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 48/269 (17%), Positives = 94/269 (34%), Gaps = 12/269 (4%)
Query: 23 DSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMG 81
D + W + AT + +LE+ GYK IK + L ID+
Sbjct: 69 DGKKDITIGAFNGWDESFATAGIMKNVLEKD-GYKVTIKGFDAGPGYAGLVAGDIDLLTD 127
Query: 82 YWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAK 141
W P + ++ + AK +AVN A ++ D+ E
Sbjct: 128 GWLPVTHADYVKRYGD-KMENLGCWYDNAKLTIAVNKDSKA---RTIGDLKTMGDEYDNT 183
Query: 142 IYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPH 201
+YGIE G + D + LK +S A +Q+++ W PH
Sbjct: 184 LYGIEAGAGLTKATKDSAIPK-YGLKNLNFKISSTPAMLAQLKKSTSAGQDIAVTLWRPH 242
Query: 202 PINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKL 261
+ L ++ G E +Y+ R + P +++L++N+ F +++
Sbjct: 243 WAYGAFPVRDLKDPKKAMGNAE-VIYSFGRPGFEQDFPKVAQLVRNMAFDDNKLSDLEDT 301
Query: 262 I----LNNKQDRQFVGRTMLRTHPDLLKN 286
+ ++++ + + D +
Sbjct: 302 MFSADKYGGKNQEKAVEEWISRNNDWVDK 330
>gi|162419448|ref|YP_001607862.1| glycine betaine transporter periplasmic subunit [Yersinia pestis
Angola]
gi|165925350|ref|ZP_02221182.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165939933|ref|ZP_02228471.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Yersinia pestis biovar
Orientalis str. IP275]
gi|166008097|ref|ZP_02228995.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166212295|ref|ZP_02238330.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Yersinia pestis biovar Antiqua
str. B42003004]
gi|167399555|ref|ZP_02305079.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167421159|ref|ZP_02312912.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167423587|ref|ZP_02315340.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|162352263|gb|ABX86211.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Yersinia pestis Angola]
gi|165912152|gb|EDR30791.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Yersinia pestis biovar
Orientalis str. IP275]
gi|165922957|gb|EDR40108.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165992479|gb|EDR44780.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166206226|gb|EDR50706.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Yersinia pestis biovar Antiqua
str. B42003004]
gi|166960648|gb|EDR56669.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167052059|gb|EDR63467.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167057757|gb|EDR67503.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|262366430|gb|ACY62987.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Yersinia pestis D182038]
Length = 326
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 39/315 (12%), Positives = 87/315 (27%), Gaps = 34/315 (10%)
Query: 7 VCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVP 65
L + +S A V+ + ++ T++ + LE LGY K +
Sbjct: 2 ALTTLISSQLSAAELPGKGITVQPLQSTISEETFQTSLVNKALE-KLGYDVQPTKEVDYN 60
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
V + S+ W P + ++G ++
Sbjct: 61 VAYSSIAAGDATYLAVNWVPLHNDQYNAAGGDAKFYRQGNYIEGLAQGYLIDKKTADQYN 120
Query: 126 KSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ + + A + G PG I I S + +
Sbjct: 121 ITNVAQLKDPKIAKLFDANNDGKADLTGCNPGWGCEAPINHQIKAYGLSDT-VTHNQGNY 179
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHP----INSDLNIHYLPGGEE--------------- 217
A + + P ++ +W P+ + ++ +L
Sbjct: 180 AAMIADTITRYKEGKPILYYTWTPYWVSDVLVPGRDVVWLQVPFSSLPDKTIDTQLSNGA 239
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI---LNNKQDRQFVGR 274
GF + ++ V + + P ++L +K S+ N + ++ D +
Sbjct: 240 NYGFPPSVMHIVANKKWAEANPAAAKLFSIMKLSINDVNAQNMRMHSGESSDADIERHVN 299
Query: 275 TMLRTHPDLLKNWLI 289
+ H W+
Sbjct: 300 GWINAHQATFDGWVK 314
>gi|254556516|ref|YP_003062933.1| glycine betaine/carnitine/choline ABC transporter, substrate
binding protein [Lactobacillus plantarum JDM1]
gi|254045443|gb|ACT62236.1| glycine betaine/carnitine/choline ABC transporter, substrate
binding protein [Lactobacillus plantarum JDM1]
Length = 311
Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats.
Identities = 39/310 (12%), Positives = 79/310 (25%), Gaps = 37/310 (11%)
Query: 1 MYKI----------LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILE 50
M KI +A L L S +R A T+ M +++
Sbjct: 1 MKKIKKWLLGVFATVASALLLAGCGFPGLS-GTSSDTIRIASQNTTEQQIMAYMIQDMIK 59
Query: 51 EILGYKTNIKL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEG---------- 98
T I + V+F +LKN DI + + I +
Sbjct: 60 HYSNLNTTIINNLGSGTVSFNALKNDQADISAIRYTGTDLTTILGEKMDRSNIKSIDQKV 119
Query: 99 ------SIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGN 152
++ G A ++ KK G++
Sbjct: 120 RSQFNSEYQMTYFPSYGFADTYAFMVTKATAKKYHLNTVSDMKKVASKLTVGLDQIWTER 179
Query: 153 QRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYL 212
+ + + + + + + L + ++ L
Sbjct: 180 KGDGYPAFKKLYGFQFGK----TYPMQIGLVYDALESGKMDAILGYSTDGRIGSYDLKIL 235
Query: 213 PGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQ 270
+ + V + L P + +L + K S+ + + NN + +
Sbjct: 236 KDDKNFF--PPYNASAVATNKILKAHPKLKPILNRLNGKISLKTMQNLNYQVDNNLVEPE 293
Query: 271 FVGRTMLRTH 280
V + L H
Sbjct: 294 VVAKQFLEKH 303
>gi|237736979|ref|ZP_04567460.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
gi|229420841|gb|EEO35888.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
Length = 526
Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats.
Identities = 44/303 (14%), Positives = 85/303 (28%), Gaps = 35/303 (11%)
Query: 2 YKILAVCLFLTTFSISYARD----ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
IL + +FL FS A V A +T+ M + ++E+ K
Sbjct: 224 KLILTLAVFLILFSSGKNIVKNFIAPQEKVVTIASKDYTEQILLGNMLADLIEDKTDIKV 283
Query: 58 --NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFI-------------------APYLE 96
+ L V F +L +D++M Y + E
Sbjct: 284 NRKLALGGTQVIFGALNKGEVDMYMEYTGTMFADMLKHNPIAENVKSSDVYSISKKEIEE 343
Query: 97 EGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
+ + + E Y LAV K I + +
Sbjct: 344 KYDVLVGKEISANNTYRLAVRKETADKYNLENISDL-IKVAPQLTISSTFEFTNKHDGLP 402
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
++ L + + N V ++ + S N+ L +
Sbjct: 403 GLLEAYPGLKFKNSL-----SIDGALRYQAIANKESDVIDAFATDGLISTYNLVVLDDDK 457
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
E ++R D +K P + + ++ + + E+ + K++ Q V
Sbjct: 458 EFFL--PYHAVPLIREDIANKYPELKNIADSLVDVLTDEVMRELNNQVDTYKREPQEVAH 515
Query: 275 TML 277
L
Sbjct: 516 EFL 518
>gi|321312923|ref|YP_004205210.1| glycine betaine/carnitine/choline/choline sulfate ABC transporter
osmoprotectant-binding lipoprotein [Bacillus subtilis
BSn5]
gi|320019197|gb|ADV94183.1| glycine betaine/carnitine/choline/choline sulfate ABC transporter
(osmoprotectant-binding lipoprotein) [Bacillus subtilis
BSn5]
Length = 305
Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats.
Identities = 33/306 (10%), Positives = 77/306 (25%), Gaps = 33/306 (10%)
Query: 1 MYKI--LAVCLFLTTFSISYARDA----DSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
M KI L F+ + S ++ T+ M + ++E
Sbjct: 3 MTKIKWLGAFAFVFVMLLGGCSLPGLGGASDDTIKIGAQSMTESEIVANMIAQLIEHDTD 62
Query: 55 YKTNIKL--LAVPVTFRSLKNKGIDIFMGYW---------------YPSLEKFIAPYLEE 97
T + + V +++ IDI + P I +
Sbjct: 63 LNTALVKNLGSNYVQHQAMLGGDIDISATRYSGTDLTSTLGREAEKDPKKALNIVQNEFQ 122
Query: 98 GSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILD 157
+ G A + ++ KK G++ +
Sbjct: 123 KRFSYKWFDSYGFDNTYAFTVTKKFAEKEHINTVSDLKKNASQYKLGVDNAWLKRKG--- 179
Query: 158 MINNNKFSLKGFRLIEAS-ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ K + + + + +N L++ ++ L
Sbjct: 180 --DGYKGFVSTYGFEFGTTYPMQIGLVYDAVKNGKMDAVLAYSTDGRIKAYDLKILKD-- 235
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F V+ L P + ++ + + E+ + ++ V +
Sbjct: 236 DKRFFPPYDCSPVIPEKVLKAHPELEGVINKLIGQIDTETMQELNYEVDGKLKEPSVVAK 295
Query: 275 TMLRTH 280
L H
Sbjct: 296 EFLEKH 301
>gi|229589719|ref|YP_002871838.1| putative ABC transporter substrate-binding protein [Pseudomonas
fluorescens SBW25]
gi|229361585|emb|CAY48462.1| putative ABC transport system, substrate-binding protein
[Pseudomonas fluorescens SBW25]
Length = 349
Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats.
Identities = 46/315 (14%), Positives = 94/315 (29%), Gaps = 50/315 (15%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKG--IDIFMG 81
+ + + WT A + +++ L + V V F + +D+
Sbjct: 26 AKDKIVIGEQNWTGAIAIQHILGEVIKSRLDGDVSYLAGDVAVLFSAAAKGDGSVDVLTD 85
Query: 82 YWYPSLEKFIAPYLEEGSIKLV-AENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELG 139
W P+ A Y+ G+ LV + + + +KS D+ K +
Sbjct: 86 IWLPNQSAAWAKYVTGGTRSLVPNTHPYAGEQGFYIPGYLQDKYGVKSIYDLKKPEVAKL 145
Query: 140 AKIYG--------IEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI 191
+ G G E + F+ K + +++++ +
Sbjct: 146 FEPLGGGKAELLVGPAGWESTYIGQIKAKDYGFADKF-ESVSTEASVTYAKLASAYKAQR 204
Query: 192 PAVFLSWEPHPINSDLN---------------------------------IHYLPGGEEI 218
VF ++ P I S + P
Sbjct: 205 GVVFYAYTPDWIFSAFDLRRLEEPAFDGYAQDNKKDDPLYKADGCWKFISPTVDPDWLNK 264
Query: 219 ----SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGR 274
F +A V+ + + + P I+ L+N+ A NE++ I KQ V +
Sbjct: 265 SQITCAFPDAKVHILASAALQKRAPKIAEFLRNVAIEPAQLNELILKIEKEKQPADVVAK 324
Query: 275 TMLRTHPDLLKNWLI 289
++ + + WL
Sbjct: 325 AWVQVNSATVDQWLA 339
>gi|307244485|ref|ZP_07526594.1| ABC transporter, substrate-binding protein, QAT family
[Peptostreptococcus stomatis DSM 17678]
gi|306492178|gb|EFM64222.1| ABC transporter, substrate-binding protein, QAT family
[Peptostreptococcus stomatis DSM 17678]
Length = 513
Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats.
Identities = 41/298 (13%), Positives = 92/298 (30%), Gaps = 33/298 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL- 62
+++ +FL I + A ++ + +++ G NI
Sbjct: 221 MVSGIIFLIGLFILGFYHNQKNKSINIASKPTSESYILAELVGELIKHDTGLNVNITHGV 280
Query: 63 --AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP---------------YLEEGSIKLVAE 105
++ D++ Y S + + Y + +
Sbjct: 281 GGGTSNIHPAIVRGDFDMYPEYTGTSWQIVLKKTETYTNEKFNLLDQEYRRQYKLAWKGM 340
Query: 106 NLQGAKYMLAVNDV-GFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNK 163
Y LA+ IK++ D+AKY + ++G E E + ++ K
Sbjct: 341 FGFNDTYSLAIRADLVKRYNIKTFSDLAKYAGDF---VFGAEYDFFEREDGYKALADSYK 397
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+ + + + V + SD I L ++ + +
Sbjct: 398 L------QFKKAVDMDNGLKYQALYDKKIDVMTVFTTDGQISDPRIIVLED--DLEFYPK 449
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
VVR D L++ P ++ +L + + + K + NK++ + V + L
Sbjct: 450 YMAGMVVREDTLNRHPELNLVLDKLNNLMDEKTMSFLNKKVEINKENPRDVAKKFLME 507
>gi|145598909|ref|YP_001162985.1| glycine betaine transporter periplasmic subunit [Yersinia pestis
Pestoides F]
gi|145210605|gb|ABP40012.1| glycine betaine-binding periplasmic protein [Yersinia pestis
Pestoides F]
Length = 334
Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats.
Identities = 41/319 (12%), Positives = 89/319 (27%), Gaps = 35/319 (10%)
Query: 4 ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKL 61
I A+ L S A + V+ + ++ T++ + LE LGY K
Sbjct: 6 IWALALTTLISSQLSAAELPGKGITVQPLQSTISEETFQTSLVNKALE-KLGYDVQPTKE 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V + S+ W P + ++G ++
Sbjct: 65 VDYNVAYSSIAAGDATYLAVNWVPLHNDQYNAAGGDAKFYRQGNYIEGLAQGYLIDKKTA 124
Query: 122 ALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ + + A + G PG I I S
Sbjct: 125 DQYNITNAAQLKDPKIAKLFDANNDGKADLTGCNPGWGCEAPINHQIKAYGLSDT-VTHN 183
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHP----INSDLNIHYLPGGEE----------- 217
+ + A + + P ++ +W P+ + ++ +L
Sbjct: 184 QGNYAAMIADTITRYKEGKPILYYTWTPYWVSDVLVPGRDVVWLQVPFSSLPDKTIDTQL 243
Query: 218 ----ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI---LNNKQDRQ 270
GF + ++ V + + P ++L +K S+ N + ++ D +
Sbjct: 244 SNGANYGFPPSVMHIVANKKWAEANPAAAKLFSIMKLSINDVNAQNMRMHSGESSDADIE 303
Query: 271 FVGRTMLRTHPDLLKNWLI 289
+ H W+
Sbjct: 304 RHVNGWINAHQATFDGWVK 322
>gi|194432981|ref|ZP_03065264.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Shigella dysenteriae 1012]
gi|194418708|gb|EDX34794.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Shigella dysenteriae 1012]
gi|332088656|gb|EGI93769.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Shigella dysenteriae 155-74]
Length = 330
Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats.
Identities = 41/320 (12%), Positives = 94/320 (29%), Gaps = 36/320 (11%)
Query: 4 ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKL 61
+ A + ++A D V + T+ T + S LE LGY
Sbjct: 6 LFATAFATLISTQTFAADLPGKGITVNPVQSTITEETFQTLLVSRALE-KLGYTVNKPSE 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V + SL + W P + + + GA ++
Sbjct: 65 VDYNVGYTSLASGDATFTAVNWTPLHDNMYEAAGGDKKFYREGVFVNGAAQGYLIDKKTA 124
Query: 122 ALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ + + A + G PG I + + +
Sbjct: 125 DQYKITNIAQLKDPKSAKLFDTNGDGKADLTGCNPGWGCEGAINHQLAAYELT-NTVTHN 183
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEEI---------- 218
+ + A + + P + +W P+ ++++ ++ +L
Sbjct: 184 QGNYAAMMADTISRYKEGKPVFYYTWTPYWVSNELKPGKDVVWLQVPFSALPGDKNADTK 243
Query: 219 ------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
GF ++++ V + +K P ++L ++ VA N ++ + K +
Sbjct: 244 LPNGANYGFPVSTMHIVANKAWAEKNPAAAKLFAIMQLPVADINAQNAIMHDGKASEGDI 303
Query: 273 ---GRTMLRTHPDLLKNWLI 289
++ H W+
Sbjct: 304 QGHVDGWIKAHQQQFDGWVN 323
>gi|319400451|gb|EFV88685.1| glycine/betaine/carnitine/choline-binding protein [Staphylococcus
epidermidis FRI909]
Length = 319
Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats.
Identities = 29/304 (9%), Positives = 78/304 (25%), Gaps = 31/304 (10%)
Query: 2 YKILAVCLFLTTFSISYA----RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
K L V + T +++ S VR G ++ + M +++E +
Sbjct: 5 KKYLIVLVLCLTVLSGCNLPGLKNSHSDDDVRITSLGTSESQIISHMLRLLIEHDTKGEI 64
Query: 58 NIKL----LAVPVTFRSLKNKGIDIFMGYWY---------------PSLEKFIAPYLEEG 98
L + + ++ + ++ + P +
Sbjct: 65 KPTLINNLGSSTIQHNAVTSGQANMSGTRYTGTDLTGALKEDPIKDPKKAMKATQEGFKK 124
Query: 99 SIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
N G + A+ + ++ +K G++ +
Sbjct: 125 KYNQTFFNSYGFENTYALIVTKETAKKYHLETVSDLEKHAKDLRVGMDSSWMDRKGDGYP 184
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
++ + + + V + + S ++ L
Sbjct: 185 AFKKEYGYSFGTVRP----MQIGLVYDALSSGKLDVAVGYSTDGRISAYDLKVLEDDRRF 240
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
+ L + P++ ++K + K S E+ ++ V
Sbjct: 241 F--PPYDASPLASDQLLKEKPDLKPIVKKLEGKISTEQMQELNYQADGKGKEPATVAEDF 298
Query: 277 LRTH 280
L+ H
Sbjct: 299 LKKH 302
>gi|309776271|ref|ZP_07671260.1| osmoprotectant ABC transporter, permease protein
[Erysipelotrichaceae bacterium 3_1_53]
gi|308915951|gb|EFP61702.1| osmoprotectant ABC transporter, permease protein
[Erysipelotrichaceae bacterium 3_1_53]
Length = 523
Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats.
Identities = 36/299 (12%), Positives = 88/299 (29%), Gaps = 33/299 (11%)
Query: 3 KILAVCLFLTTFSISYAR---DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-- 57
KI+ L S + + + ++ M + ++E YK
Sbjct: 226 KIIVSILCACLLLASIGSRLMAGSNKEALHIGSSDMSEQLILGNMYADMIEAKTDYKVQR 285
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIA----------------PYLEEGSIK 101
++ L V + F +L++ ID+++ Y + E+ +
Sbjct: 286 DLSLGGVQICFSALQSGQIDMYVDYTGTLYGDILKMESNSDAKEVYQVAKEKIKEKYDLT 345
Query: 102 LVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN 160
L+ + Y V +K+ D+ K L + L I
Sbjct: 346 LLDQTPFNDTYTFTVRKDTAKKYNLKTVSDLEKVSDRLVITPTLA---FNNRKEALPGIK 402
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISG 220
+ +++ + + N V ++ + S ++ L ++
Sbjct: 403 SKYPNMRFKD----NIAMDGATRYVALANKESDVIDAYSTDGLISYYDLVVLEDDKQYFL 458
Query: 221 FGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+V L++ P+ ++ + S ++ + K++ V L
Sbjct: 459 --PYYGVPMVSEHLLEEYPDAIPVINELSAHLSSEGMRKLNYEVDVKKREPAEVAHEFL 515
>gi|70725352|ref|YP_252266.1| hypothetical protein SH0351 [Staphylococcus haemolyticus JCSC1435]
gi|68446076|dbj|BAE03660.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 314
Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats.
Identities = 44/272 (16%), Positives = 105/272 (38%), Gaps = 7/272 (2%)
Query: 26 TPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA-VPVTFRSLKNKGIDIFMGYWY 84
+ + + + + +L++ GY + + ++ +
Sbjct: 45 KEIEIPYIASDNSTPRSLVIAEVLKKA-GYDVTTTPVTASGPLYAAVSENSDSFHASGIF 103
Query: 85 PSLEK-FIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIY 143
P+ +K + + + +I + AK LAV + S + + K + I
Sbjct: 104 PTTDKSYYDKFKSKLTIYDDKHLIDNAKVGLAVPKYVQDVDSISDLKNSDFGKSVDWTIQ 163
Query: 144 GIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPI 203
G + N Q D ++++ + L E+S+ F +I+ + P VF + EP
Sbjct: 164 GTDARNGVMQETKDELDSDNLDK--YSLKESSDQDQFKKIQSAFKQQEPIVFTAMEPSWF 221
Query: 204 NSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKL 261
+ +L++ L + I G + V D+ + P + + +S + E+++ K
Sbjct: 222 SKELDVKMLKDPDNIYGNNNQHIDLVFNKDFKEAHPAAYTIATRMADDWSKSDEDKLAKK 281
Query: 262 ILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
I + ++ + V + + + + + WL G+ T
Sbjct: 282 IFVDNKNPEQVAKDYVDDNDNKVDEWLEGIET 313
>gi|314929749|gb|EFS93580.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL044PA1]
gi|314972182|gb|EFT16279.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL037PA3]
Length = 335
Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats.
Identities = 53/275 (19%), Positives = 95/275 (34%), Gaps = 12/275 (4%)
Query: 17 SYARDADSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKG 75
+ A AD + W + AT + +LE+ GYK IK + L
Sbjct: 59 TTAMKADGKKDITIGAFNGWDESFATAGIMKNVLEKD-GYKVTIKGFDAGPGYAGLVAGD 117
Query: 76 IDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK 135
ID+ W P + +K + AK + VN A K+ D+
Sbjct: 118 IDLLTDTWLPITHADYVKRYGD-KMKSLGCWYDNAKLTIVVNKDSKA---KTIGDLKSIG 173
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
E G +YGIE G + + L +S A SQ+++
Sbjct: 174 DEYGNTLYGIEAGAGLTKVTQQSAIPK-YGLNNLSFKISSTPAMLSQLKKAADAKRDIAV 232
Query: 196 LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
W PH I L ++ G E +Y+ RS + P ++L++N+ F
Sbjct: 233 TLWRPHWAYGAFPIRDLKDPKKAMGDAE-VIYSFARSGFEQDFPKAAQLMRNMAFDDKTL 291
Query: 256 NEMMKLI----LNNKQDRQFVGRTMLRTHPDLLKN 286
+++ ++ ++++ + D +
Sbjct: 292 SDLEDIMFSADKYGGKNQEKAVAEWTSRNEDWVDK 326
>gi|313885077|ref|ZP_07818829.1| ABC transporter, substrate-binding protein, QAT family [Eremococcus
coleocola ACS-139-V-Col8]
gi|312619768|gb|EFR31205.1| ABC transporter, substrate-binding protein, QAT family [Eremococcus
coleocola ACS-139-V-Col8]
Length = 293
Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats.
Identities = 41/298 (13%), Positives = 100/298 (33%), Gaps = 32/298 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDA-DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M K+L L L + A + +R +T+ + ++ LE+ GYK +
Sbjct: 1 MKKVLMSILVLVSLLALLPGRALAADKSIRVGSKDFTESLIVGEIYALALEDQ-GYKVDR 59
Query: 60 KLL-AVPVTFRSLKNKGIDIFMGYWYPSLEKFIA----------------PYLEEGSIKL 102
A V S+ N ID++ Y +L + Y ++ +
Sbjct: 60 VSSIASSVIHTSIVNDEIDLYPEYTGTALLSILKLHLETDPQKVYDMVKAEYEKQFKLTW 119
Query: 103 VAENLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINN 161
+ + L + GIK+ D+ K++ G ++ +L +
Sbjct: 120 LDYSPASDSQGLVMRKESADKLGIKTISDLQAKAKDVRFASQG--EFDQREDGLLGLAQT 177
Query: 162 NKFSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISG 220
S + + + +N + ++ + + + + ++
Sbjct: 178 YG------DFAFKSSTIYDNSLKYQVLASNEADLAPAYTTEGQLVNSDQYVVLEDDKAF- 230
Query: 221 FGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
+ ++ V+R D+L +++ ++ + K E+ + + QD + V +
Sbjct: 231 WPPYNLAPVIRQDFLKDHQDVADIINKLSAKLDTKTMIELNAKVDVDGQDYEDVAKEF 288
>gi|322831480|ref|YP_004211507.1| Substrate-binding region of ABC-type glycine betaine transport
system [Rahnella sp. Y9602]
gi|321166681|gb|ADW72380.1| Substrate-binding region of ABC-type glycine betaine transport
system [Rahnella sp. Y9602]
Length = 331
Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats.
Identities = 33/316 (10%), Positives = 88/316 (27%), Gaps = 43/316 (13%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK-LLAVPVTFRSLKNKGIDIFM 80
V + ++ + T + S LE LGY + V + +L
Sbjct: 26 PGKGISVTPVQSTISEESFQTELVSKALE-KLGYDVQPTREVDYNVGYTTLAAGDATFTA 84
Query: 81 GYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD---------I 131
W P ++ + + GA ++ + + +
Sbjct: 85 VNWSPLHDEMYKAAGGDKVFYREGTYVTGAAQGWLIDKKTAEKYHITNIEQLKDPKLAKL 144
Query: 132 AKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI 191
+ A + G PG + + + + + A + +
Sbjct: 145 FDTNGDGKADLTGCTPGWGCEAALNEQLKAYGLE-PTVTHNQGNYSAMIADTITRYKEGK 203
Query: 192 PAVFLSWEPHP----INSDLNIHYLPGGE----------------EISGFGEASVYTVVR 231
P + +W P+ + ++ ++ + GF ++++ V
Sbjct: 204 PIFYYTWTPYWVSNVLIPGKDVLWMQVPFSVVPGDKNADTKLPNGKNYGFPVSTMHIVAN 263
Query: 232 SDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRT---MLRTHPDLLKNWL 288
+ +K P ++L +K + N + K + ++ H + W+
Sbjct: 264 KAWAEKNPAAAKLFAIMKLPLKDINAQNAAMHAGKNSDADIAAQTDGWIKAHQEEFDGWV 323
Query: 289 IGVTTFDGQDPSRQLE 304
++ + +
Sbjct: 324 --------KEAAAAAK 331
>gi|157147148|ref|YP_001454467.1| hypothetical protein CKO_02925 [Citrobacter koseri ATCC BAA-895]
gi|157084353|gb|ABV14031.1| hypothetical protein CKO_02925 [Citrobacter koseri ATCC BAA-895]
Length = 293
Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats.
Identities = 41/291 (14%), Positives = 81/291 (27%), Gaps = 29/291 (9%)
Query: 9 LFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEE-ILGYKTNIKLLAVPVT 67
L + ++ +T+ + + LE+ L + L +
Sbjct: 7 LAASWLALGLFAAQAQAADFVVGSKNFTEQYILAEIYAQALEQSGLSVERKTNLGGTLIA 66
Query: 68 FRSLKNKGIDIFMGYWYPSLEKFIA----------------PYLEEGSIKLVAENLQGAK 111
+L ID++ Y +L + Y ++ + +
Sbjct: 67 HAALLKGEIDMYPEYTGTALSAVVKGKPSSDAAQVFKQVSDAYQQQYHLTWLQPARVNNG 126
Query: 112 YMLAVNDVGFAL-GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
Y L V+ +K+ D+AK EL I + + + +
Sbjct: 127 YALLVSKQTAEKYHLKTLSDLAKAAPEL--TIGAGAEFGDRQDGLKGLEQTYG-----IK 179
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
+ A V + ++ L + F V VV
Sbjct: 180 FKAFRQFAKVGLRYDALAAGQIDVANGFATDWQIAENQYVALED--DKHLFPPYEVAPVV 237
Query: 231 RSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
R L P + +L NI A ++ + NK++ + V LR
Sbjct: 238 RDTALQAHPQVRDILNNISQLLDNATMQKLNAEVEKNKEEPRDVAEDFLRA 288
>gi|310778347|ref|YP_003966680.1| Substrate-binding region of ABC-type glycine betaine transport
system [Ilyobacter polytropus DSM 2926]
gi|309747670|gb|ADO82332.1| Substrate-binding region of ABC-type glycine betaine transport
system [Ilyobacter polytropus DSM 2926]
Length = 297
Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats.
Identities = 34/301 (11%), Positives = 86/301 (28%), Gaps = 32/301 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCT--PVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K+L + + + A + T +T+ + +V++E YKT+
Sbjct: 1 MVKLLKRIVLVMMIVVFAACGKKEAKLEMITLGHTNFTEQRVLGQLFAVMIENHTDYKTD 60
Query: 59 IKL-LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP-----------------YLEEGSI 100
+K + F ++K I I+ + ++ ++
Sbjct: 61 VKELGGTKIAFEAIKTGDISIYPHCTGTGYSVILKQTELKDPDAVYEYVKNAYAEKKYNL 120
Query: 101 KLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI 159
+ + Y LA+ +K++ D+AK +EL E + +
Sbjct: 121 EYLKPLGFNDTYTLAIKPETAEKYNLKTFSDLAKVSEELVIGATM--EFLEREDGVPGLK 178
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
+ + + + + ++ N+ L +
Sbjct: 179 KAYPGME-----FKGEKALEGGLRYTAIKEDKIDIADAFSTDGKLLTYNLVILEDDKNFF 233
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
++ ++ P I +L+ + + + M + V L
Sbjct: 234 --PPYYAAPLLNGEFAKNHPEIKEVLEKLAEQINENDMQNMNYRADEEGIPARVVAEEFL 291
Query: 278 R 278
+
Sbjct: 292 K 292
>gi|264677527|ref|YP_003277433.1| substrate-binding region of ABC-type glycine [Comamonas
testosteroni CNB-2]
gi|262208039|gb|ACY32137.1| Substrate-binding region of ABC-type glycine [Comamonas
testosteroni CNB-2]
Length = 348
Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats.
Identities = 40/326 (12%), Positives = 84/326 (25%), Gaps = 40/326 (12%)
Query: 2 YKILAVCLFLTTFS------ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
Y+ L L+ + S V+ + T + S LE LGY
Sbjct: 18 YRYLVAIALLSFGAAAAQAQTSSGNLPGKGVSVQPLKGTVDEEMFQTLLVSRALE-KLGY 76
Query: 56 KTN-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
+ +K L ++ +W P F + + + A
Sbjct: 77 RVQPVKSLENGTQHVAVAQGDATFTATHWMPLHRAFYESNGADKAFYRAGTYSRNAVQGY 136
Query: 115 AVNDVGFALGIKSYQD---------IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFS 165
++ + + + A + G PG I +
Sbjct: 137 LIDKATAEKYRITSIMQLKDPKLAALFDTDGDGKADLTGCNPGWGCELAINKHLKGLDLE 196
Query: 166 LKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPIN-------------------SD 206
+ + A + ++ P ++ W P +N +
Sbjct: 197 -SSITHRQGNYQALIADTITRYKSGKPILYYVWTPFWVNTVLRPGKEVSWLEVPNVPGAQ 255
Query: 207 LNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNK 266
+ GF Y + + +K P ++L ++ + N + +
Sbjct: 256 GEDQTQLPNGKNYGFQLNQQYILANKAWAEKNPAAAKLFAVMQLPIEDINAQNMRMRQGE 315
Query: 267 QDRQFVGRT---MLRTHPDLLKNWLI 289
V R ++ H +WL
Sbjct: 316 SSSADVSRHVDGWIKAHQQTFDSWLE 341
>gi|15832796|ref|NP_311569.1| glycine betaine transporter periplasmic subunit [Escherichia coli
O157:H7 str. Sakai]
gi|16130593|ref|NP_417165.1| glycine betaine transporter subunit [Escherichia coli str. K-12
substr. MG1655]
gi|89109472|ref|AP_003252.1| glycine betaine transporter subunit [Escherichia coli str. K-12
substr. W3110]
gi|168750922|ref|ZP_02775944.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Escherichia coli O157:H7 str.
EC4113]
gi|168755424|ref|ZP_02780431.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Escherichia coli O157:H7 str.
EC4401]
gi|168762474|ref|ZP_02787481.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Escherichia coli O157:H7 str.
EC4501]
gi|168768770|ref|ZP_02793777.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Escherichia coli O157:H7 str.
EC4486]
gi|168774789|ref|ZP_02799796.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Escherichia coli O157:H7 str.
EC4196]
gi|168778661|ref|ZP_02803668.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Escherichia coli O157:H7 str.
EC4076]
gi|168787934|ref|ZP_02812941.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Escherichia coli O157:H7 str.
EC869]
gi|168800564|ref|ZP_02825571.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Escherichia coli O157:H7 str.
EC508]
gi|170082264|ref|YP_001731584.1| glycine betaine ABC transporter periplasmic-binding protein
[Escherichia coli str. K-12 substr. DH10B]
gi|195938433|ref|ZP_03083815.1| glycine betaine transporter periplasmic subunit [Escherichia coli
O157:H7 str. EC4024]
gi|208806514|ref|ZP_03248851.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Escherichia coli O157:H7 str.
EC4206]
gi|208811876|ref|ZP_03253205.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Escherichia coli O157:H7 str.
EC4045]
gi|208820631|ref|ZP_03260951.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Escherichia coli O157:H7 str.
EC4042]
gi|209399990|ref|YP_002272145.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Escherichia coli O157:H7 str.
EC4115]
gi|217327747|ref|ZP_03443830.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Escherichia coli O157:H7 str.
TW14588]
gi|218547804|ref|YP_002381595.1| glycine betaine transporter periplasmic subunit [Escherichia
fergusonii ATCC 35469]
gi|238901823|ref|YP_002927619.1| glycine betaine transporter subunit [Escherichia coli BW2952]
gi|254794626|ref|YP_003079463.1| glycine betaine transporter periplasmic subunit [Escherichia coli
O157:H7 str. TW14359]
gi|256024809|ref|ZP_05438674.1| glycine betaine transporter periplasmic subunit [Escherichia sp.
4_1_40B]
gi|261225976|ref|ZP_05940257.1| glycine betaine transporter subunit; periplasmic-binding component
of ABC superfamily protein [Escherichia coli O157:H7
str. FRIK2000]
gi|261256766|ref|ZP_05949299.1| glycine betaine transporter subunit; periplasmic-binding component
of ABC superfamily protein [Escherichia coli O157:H7
str. FRIK966]
gi|291284012|ref|YP_003500830.1| Glycine betaine-binding periplasmic protein precursor [Escherichia
coli O55:H7 str. CB9615]
gi|293415930|ref|ZP_06658570.1| glycine betaine-binding periplasmic protein [Escherichia coli B185]
gi|300922747|ref|ZP_07138836.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 182-1]
gi|300949075|ref|ZP_07163122.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 116-1]
gi|300957450|ref|ZP_07169663.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 175-1]
gi|301327381|ref|ZP_07220630.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 78-1]
gi|301645342|ref|ZP_07245289.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 146-1]
gi|307139371|ref|ZP_07498727.1| glycine betaine transporter periplasmic subunit [Escherichia coli
H736]
gi|331654162|ref|ZP_08355162.1| glycine betaine-binding periplasmic protein [Escherichia coli M718]
gi|84029479|sp|P0AFM3|PROX_ECO57 RecName: Full=Glycine betaine-binding periplasmic protein; Flags:
Precursor
gi|84029480|sp|P0AFM2|PROX_ECOLI RecName: Full=Glycine betaine-binding periplasmic protein; Flags:
Precursor
gi|147375|gb|AAA24429.1| proX peptide precursor [Escherichia coli]
gi|1789034|gb|AAC75726.1| glycine betaine transporter subunit [Escherichia coli str. K-12
substr. MG1655]
gi|1800067|dbj|BAA16544.1| glycine betaine transporter subunit [Escherichia coli str. K12
substr. W3110]
gi|13363013|dbj|BAB36965.1| high-affinity glycine betaine / proline transport system protein
[Escherichia coli O157:H7 str. Sakai]
gi|169890099|gb|ACB03806.1| glycine betaine transporter subunit; periplasmic-binding component
of ABC superfamily [Escherichia coli str. K-12 substr.
DH10B]
gi|187769591|gb|EDU33435.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Escherichia coli O157:H7 str.
EC4196]
gi|188014962|gb|EDU53084.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Escherichia coli O157:H7 str.
EC4113]
gi|189003432|gb|EDU72418.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Escherichia coli O157:H7 str.
EC4076]
gi|189357289|gb|EDU75708.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Escherichia coli O157:H7 str.
EC4401]
gi|189362104|gb|EDU80523.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Escherichia coli O157:H7 str.
EC4486]
gi|189367280|gb|EDU85696.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Escherichia coli O157:H7 str.
EC4501]
gi|189372190|gb|EDU90606.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Escherichia coli O157:H7 str.
EC869]
gi|189377211|gb|EDU95627.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Escherichia coli O157:H7 str.
EC508]
gi|208726315|gb|EDZ75916.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Escherichia coli O157:H7 str.
EC4206]
gi|208733153|gb|EDZ81840.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Escherichia coli O157:H7 str.
EC4045]
gi|208740754|gb|EDZ88436.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Escherichia coli O157:H7 str.
EC4042]
gi|209161390|gb|ACI38823.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Escherichia coli O157:H7 str.
EC4115]
gi|209762208|gb|ACI79416.1| high-affinity glycine betaine / proline transport system protein
[Escherichia coli]
gi|209762210|gb|ACI79417.1| high-affinity glycine betaine / proline transport system protein
[Escherichia coli]
gi|209762212|gb|ACI79418.1| high-affinity glycine betaine / proline transport system protein
[Escherichia coli]
gi|209762214|gb|ACI79419.1| high-affinity glycine betaine / proline transport system protein
[Escherichia coli]
gi|209762216|gb|ACI79420.1| high-affinity glycine betaine / proline transport system protein
[Escherichia coli]
gi|217320114|gb|EEC28539.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Escherichia coli O157:H7 str.
TW14588]
gi|218355345|emb|CAQ87952.1| glycine betaine transporter subunit ; periplasmic-binding component
of ABC superfamily [Escherichia fergusonii ATCC 35469]
gi|238861368|gb|ACR63366.1| glycine betaine transporter subunit [Escherichia coli BW2952]
gi|254594026|gb|ACT73387.1| glycine betaine transporter subunit; periplasmic-binding component
of ABC superfamily [Escherichia coli O157:H7 str.
TW14359]
gi|260448263|gb|ACX38685.1| Substrate-binding region of ABC-type glycine betaine transport
system [Escherichia coli DH1]
gi|290763885|gb|ADD57846.1| Glycine betaine-binding periplasmic protein precursor [Escherichia
coli O55:H7 str. CB9615]
gi|291432119|gb|EFF05101.1| glycine betaine-binding periplasmic protein [Escherichia coli B185]
gi|300315806|gb|EFJ65590.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 175-1]
gi|300420932|gb|EFK04243.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 182-1]
gi|300451461|gb|EFK15081.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 116-1]
gi|300846035|gb|EFK73795.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 78-1]
gi|301076376|gb|EFK91182.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 146-1]
gi|315137292|dbj|BAJ44451.1| glycine betaine-binding periplasmic protein precursor [Escherichia
coli DH1]
gi|315615066|gb|EFU95703.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Escherichia coli 3431]
gi|320189010|gb|EFW63669.1| L-proline glycine betaine binding ABC transporter protein ProX
[Escherichia coli O157:H7 str. EC1212]
gi|320640668|gb|EFX10204.1| glycine betaine transporter periplasmic subunit [Escherichia coli
O157:H7 str. G5101]
gi|320646033|gb|EFX15010.1| glycine betaine transporter periplasmic subunit [Escherichia coli
O157:H- str. 493-89]
gi|320651333|gb|EFX19764.1| glycine betaine transporter periplasmic subunit [Escherichia coli
O157:H- str. H 2687]
gi|320656724|gb|EFX24612.1| glycine betaine transporter periplasmic subunit [Escherichia coli
O55:H7 str. 3256-97 TW 07815]
gi|320662267|gb|EFX29664.1| glycine betaine transporter periplasmic subunit [Escherichia coli
O55:H7 str. USDA 5905]
gi|320667318|gb|EFX34276.1| glycine betaine transporter periplasmic subunit [Escherichia coli
O157:H7 str. LSU-61]
gi|323978710|gb|EGB73792.1| proX protein [Escherichia coli TW10509]
gi|326338606|gb|EGD62432.1| L-proline glycine betaine binding ABC transporter protein ProX
[Escherichia coli O157:H7 str. 1044]
gi|326342866|gb|EGD66634.1| L-proline glycine betaine binding ABC transporter protein ProX
[Escherichia coli O157:H7 str. 1125]
gi|331047544|gb|EGI19621.1| glycine betaine-binding periplasmic protein [Escherichia coli M718]
gi|332087400|gb|EGI92528.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Shigella boydii 5216-82]
Length = 330
Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats.
Identities = 41/320 (12%), Positives = 94/320 (29%), Gaps = 36/320 (11%)
Query: 4 ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKL 61
+ A + ++A D V + T+ T + S LE LGY
Sbjct: 6 LFATAFATLISTQTFAADLPGKGITVNPVQSTITEETFQTLLVSRALE-KLGYTVNKPSE 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V + SL + W P + + + GA ++
Sbjct: 65 VDYNVGYTSLASGDATFTAVNWTPLHDNMYEAAGGDKKFYREGVFVNGAAQGYLIDKKTA 124
Query: 122 ALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ + + A + G PG I + + +
Sbjct: 125 DQYKITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGWGCEGAINHQLAAYELT-NTVTHN 183
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEEI---------- 218
+ + A + + P + +W P+ ++++ ++ +L
Sbjct: 184 QGNYAAMMADTISRYKEGKPVFYYTWTPYWVSNELKPGKDVVWLQVPFSALPGDKNADTK 243
Query: 219 ------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
GF ++++ V + +K P ++L ++ VA N ++ + K +
Sbjct: 244 LPNGANYGFPVSTMHIVANKAWAEKNPAAAKLFAIMQLPVADINAQNAIMHDGKASEGDI 303
Query: 273 ---GRTMLRTHPDLLKNWLI 289
++ H W+
Sbjct: 304 QGHVDGWIKAHQQQFDGWVN 323
>gi|315923837|ref|ZP_07920066.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, binding protein [Pseudoramibacter
alactolyticus ATCC 23263]
gi|315622870|gb|EFV02822.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, binding protein [Pseudoramibacter
alactolyticus ATCC 23263]
Length = 301
Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats.
Identities = 41/295 (13%), Positives = 102/295 (34%), Gaps = 31/295 (10%)
Query: 3 KILAVCLFLTTFS-ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
K+ AV + + + + + S ++ +T+ + ++ LE+ GYK +
Sbjct: 8 KLAAVTIAVALCTVFALSACGKSKGTIKVGSKNFTESEIIAEIYALALEDA-GYKVDRSF 66
Query: 62 -LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP----------------YLEEGSIKLVA 104
++ +L + ID++ Y +L + Y ++ +I+ +
Sbjct: 67 DISGSTIHTTLVHDDIDLYPAYTGTALLSVLKRPLQTDPQKVYATVKTVYKKKWNIEWLD 126
Query: 105 ENLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK 163
LA+ IK+ D+ K+ +L G +E + + +
Sbjct: 127 YAKATDSQGLAITTSAAKKYHIKTISDLQKHAAQLRFASQG--EFDERSDGLPGLTKTYG 184
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+S++ + + V + ++ + L + +
Sbjct: 185 AFHW-----RSSKIYDNALKYQVLLKGQADVTPCYTTEGQLTNKKLTLLTD--DKHFWPP 237
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
+V VVR L P+I++ L + + A ++ + +K+D + V +
Sbjct: 238 YNVAPVVRGSVLKAHPDIAKTLNAVSKHLTTAALTKLNAKVDVDKEDAEDVAKDF 292
>gi|108803427|ref|YP_643364.1| substrate-binding region of ABC-type glycine betaine transport
system [Rubrobacter xylanophilus DSM 9941]
gi|108764670|gb|ABG03552.1| Substrate-binding region of ABC-type glycine betaine transport
system [Rubrobacter xylanophilus DSM 9941]
Length = 321
Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats.
Identities = 37/276 (13%), Positives = 79/276 (28%), Gaps = 34/276 (12%)
Query: 28 VRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPVTFRSLKNKGIDIFMGYWYP 85
+ +T+ M ++ LE+ G+K + L + + R+L+N ID++ Y
Sbjct: 49 ITVGSKNFTEQYILGNMYALALEDA-GFKVERRLNLGSEQIADRALQNGQIDLYPEYTGT 107
Query: 86 SLEKFIA---------------------PYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
+L + + + ++ Y + V
Sbjct: 108 ALAAVLDYEGDPAQLDTPEQTYQRAKELYAGRDPADTMLRPAPFNNTYAIFVRREAAKRY 167
Query: 125 IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
+ + +M N F K ++ +
Sbjct: 168 DLRTLEDLA-EASPNLVFVSFSEFQHREDNFKNMKENYNFDFKDVEIVNS-----IGLRY 221
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
+ V + + + + L S + VVR++ L+K P I +
Sbjct: 222 QGVLQGEGDVGVGFTTDGQLASDRLVVLEDP--KSIWPFYQPAPVVRTEVLEKNPKIREV 279
Query: 245 LKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
L + V + + K+D + V R L
Sbjct: 280 LNEVSASLDVETMRRLNGRVDLQKEDPEDVAREYLE 315
>gi|92114477|ref|YP_574405.1| substrate-binding region of ABC-type glycine betaine transport
system [Chromohalobacter salexigens DSM 3043]
gi|91797567|gb|ABE59706.1| Substrate-binding region of ABC-type glycine betaine transport
system [Chromohalobacter salexigens DSM 3043]
Length = 300
Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats.
Identities = 37/297 (12%), Positives = 92/297 (30%), Gaps = 27/297 (9%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL- 62
++ +T A + +T+ ++MT+ L+ GY+ + +
Sbjct: 8 LIGGLALASTLVSPLTSTAAHAEDITVGGKNFTEQLILSSMTTQYLQAH-GYEVDQRAGM 66
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKF---------------IAPYLEEGSIKLVAENL 107
V R+ ++ +D++ Y SL + + E + + +
Sbjct: 67 GTTVLRRAQESGQVDLYWEYTGTSLISYNKVTEDLSPEATYERVKELDAEKGLIWLEPSE 126
Query: 108 QGAKYMLAVNDVGFAL-GIKSYQDIAKYKKELGAKIYGIEP-GNEGNQRILDMINNNKFS 165
Y LA+ GI + D+A + + + M F
Sbjct: 127 ANNTYALAMRKDDAEARGIATISDLADVINGGQELVLASNATFYSRDDGLRPMQETYGFE 186
Query: 166 LKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEAS 225
+ + + + + V ++ + L++ L + + +
Sbjct: 187 FGRRNVKRMDQGLTLTSL----DQEEVDVAMTTATNGRIPALDLTVLEDDKNFF--PDYA 240
Query: 226 VYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ VVR + L+ P++ + + + + + +KQ + V L H
Sbjct: 241 LTPVVREETLEANPDLDERMNALSALLDDSTMARLNAKVDVDKQPVEKVAERFLEEH 297
>gi|194439447|ref|ZP_03071523.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Escherichia coli 101-1]
gi|194421623|gb|EDX37634.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Escherichia coli 101-1]
gi|323971476|gb|EGB66711.1| proX protein [Escherichia coli TA007]
Length = 330
Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats.
Identities = 42/320 (13%), Positives = 95/320 (29%), Gaps = 36/320 (11%)
Query: 4 ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKL 61
+ A + ++A D V + T+ T + S LE LGY N
Sbjct: 6 LFATAFATLISTQTFAADLPGKGITVNPVQSTITEETFQTLLVSRALE-KLGYTVNNPSE 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V + SL + W P + + + GA ++
Sbjct: 65 VDYNVGYTSLASGDATFTAVNWTPLHDNMYEAAGGDKKFYREGVFVNGAAQGYLIDKKTA 124
Query: 122 ALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ + + A + G PG I + + +
Sbjct: 125 DQYKITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGWGCEGAINHQLAAYELT-HTVTHN 183
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEEI---------- 218
+ + A + + P + +W P+ ++++ ++ +L
Sbjct: 184 QGNYAAMMADTISRYKEGKPVFYYTWTPYWVSNELKPGKDVVWLQVPFSALPGDKNADTK 243
Query: 219 ------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
GF ++++ V + +K P ++L ++ VA N ++ + K +
Sbjct: 244 LPNGANYGFPVSTMHIVANKAWAEKNPAAAKLFAIMQLPVADINAQNAIMHDGKASEGDI 303
Query: 273 ---GRTMLRTHPDLLKNWLI 289
++ H W+
Sbjct: 304 QGHVDGWIKAHQQQFDGWVN 323
>gi|283786766|ref|YP_003366631.1| glycine betaine/L-proline ABC transporter substrate-binding protein
[Citrobacter rodentium ICC168]
gi|282950220|emb|CBG89856.1| glycine betaine/L-proline ABC transporter, substrate-binding
protein [Citrobacter rodentium ICC168]
Length = 331
Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats.
Identities = 43/320 (13%), Positives = 86/320 (26%), Gaps = 36/320 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKLL 62
I L S A V+ + T+ + S LE LGY +
Sbjct: 7 ITTAFATLVATSAFAADLPGKGITVQPVQSTITEETFQMLLVSRALE-KLGYTVNKPSEV 65
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
V + S+ + W P + A + + GA ++
Sbjct: 66 DYNVGYTSIASGDATFTAVNWQPLHDDMYAAAGGDNKFYREGTFVNGAAQGYLIDKKTAE 125
Query: 123 LGI---------KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+ I + A + G PG I K +
Sbjct: 126 QYNITNIAQLKDPNIAKIFDTNGDGKADMMGCSPGWGCEAVINHQNKAFDL-QKTVEVSH 184
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI--------------- 218
+ A + + P ++ +W P+ ++ + ++
Sbjct: 185 GNYAAMMADTITRFKEGKPILYYTWTPYWVSDVMKPGKDVVWLQVPFSSLPGEQKDIDTS 244
Query: 219 ------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
GF +++ V + +K P ++L +K +A N ++ K V
Sbjct: 245 LPNGANYGFPVNTMHIVANKAWAEKNPAAAKLFAIMKLPLADINAQNAMMHAGKASEADV 304
Query: 273 ---GRTMLRTHPDLLKNWLI 289
++ H W+
Sbjct: 305 QGHVDGWIKAHQQQFDGWVK 324
>gi|309703044|emb|CBJ02376.1| glycine betaine/L-proline ABC transporter, substrate-binding
protein [Escherichia coli ETEC H10407]
Length = 330
Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats.
Identities = 41/320 (12%), Positives = 94/320 (29%), Gaps = 36/320 (11%)
Query: 4 ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKL 61
+ A + ++A D V + T+ T + S LE LGY
Sbjct: 6 LFATAFATLISTQTFAADLPGKGITVNPVQSTITEETFQTLLVSRALE-KLGYTVNKPSE 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V + SL + W P + + + GA ++
Sbjct: 65 VDYNVGYTSLASGDATFTAVNWTPLHDNMYEAAGGDKKFYREGVFVNGAAQGYLIDKKTA 124
Query: 122 ALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ + + A + G PG I + + +
Sbjct: 125 DQYKITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGWGCEGAINHQLAAYELT-HTVTHN 183
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEEI---------- 218
+ + A + + P + +W P+ ++++ ++ +L
Sbjct: 184 QGNYAAMMADTISRHKEGKPVFYYTWTPYWVSNELKPGKDVVWLQVPFSALPGDKNADTK 243
Query: 219 ------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
GF ++++ V + +K P ++L ++ VA N ++ + K +
Sbjct: 244 LPNGANYGFPVSTMHIVANKAWAEKNPAAAKLFAIMQLPVADINAQNAIMHDGKASEGDI 303
Query: 273 ---GRTMLRTHPDLLKNWLI 289
++ H W+
Sbjct: 304 QGHVDGWIKAHQQQFDGWVN 323
>gi|212213301|ref|YP_002304237.1| glycine betaine transport system permease protein [Coxiella
burnetii CbuG_Q212]
gi|212011711|gb|ACJ19092.1| glycine betaine transport system permease protein [Coxiella
burnetii CbuG_Q212]
Length = 526
Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats.
Identities = 32/306 (10%), Positives = 75/306 (24%), Gaps = 37/306 (12%)
Query: 2 YKILAVCLFLTTFSIS--------YARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL 53
KI +F+ F+ + A +++ + + ++E
Sbjct: 217 KKIKLTFIFILLFASLYLMIDTIIPTAFKSKKNTIVIATKNFSEQYILGDIMADMIEIRT 276
Query: 54 GYKT--NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFI----------------APYL 95
L + + +L N ID++ Y + + Y
Sbjct: 277 HLTVRKKFNLGSTAIIQNALLNGEIDLYPEYTGTAYLTVLHHANLVSAPQIFKIVKKEYQ 336
Query: 96 EEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRI 155
++ ++ + LAV I + +
Sbjct: 337 QQFNLIWLNPFGFNNSQTLAVRADFAKQHRLKTLSDLAVISP-RLTIAAPAEFLKRPDAL 395
Query: 156 LDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG 215
+ F K ++ I + RN V + ++ L
Sbjct: 396 PVLKRVYGFRFKRVIQMQPD------LIYQAIRNKDVNVIEVFTTDGRIPAYHLVPLED- 448
Query: 216 EEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVG 273
+ + V+R +L P + + L + + L+ + + V
Sbjct: 449 -DKHLYPPYYAAPVIREAFLKAHPEVEKALAPLAGLIDEKTMQHLNDLVDIKHESPEKVV 507
Query: 274 RTMLRT 279
L
Sbjct: 508 HDFLVE 513
>gi|314923881|gb|EFS87712.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL001PA1]
Length = 335
Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats.
Identities = 49/269 (18%), Positives = 95/269 (35%), Gaps = 12/269 (4%)
Query: 23 DSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMG 81
D + W + AT + +LE+ GYK IK + L ID+
Sbjct: 65 DGKKDITIGAFNGWDESFATAGIMKNVLEKD-GYKVTIKGFDAGPGYAGLVAGDIDLLTD 123
Query: 82 YWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAK 141
W P + ++ + AK +AVN A ++ D+ E
Sbjct: 124 GWLPVTHADYVKRYGD-KMENLGCWYDNAKLTIAVNKDSKA---RTIGDLKTMGDEYDNT 179
Query: 142 IYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPH 201
+YGIE G + D K+ LK +S A +Q+++ W PH
Sbjct: 180 LYGIEAGAGLTKATKDSA-IPKYGLKNLNFKISSTPAMLAQLKKSTSAGQDIAVTLWRPH 238
Query: 202 PINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKL 261
+ L ++ G E +Y+ R + P +++L++N+ F +++
Sbjct: 239 WAYGAFPVRDLKDPKKAMGNAE-VIYSFGRPGFEQDFPKVAQLVRNMAFDDNKLSDLEDT 297
Query: 262 I----LNNKQDRQFVGRTMLRTHPDLLKN 286
+ ++++ + + D +
Sbjct: 298 MFSADKYGGKNQEKAVEEWISRNNDWVDK 326
>gi|333001016|gb|EGK20586.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Shigella flexneri K-272]
gi|333015480|gb|EGK34819.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Shigella flexneri K-227]
Length = 330
Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats.
Identities = 41/320 (12%), Positives = 94/320 (29%), Gaps = 36/320 (11%)
Query: 4 ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKL 61
+ A + ++A D V + T+ T + S LE LGY
Sbjct: 6 LFATAFVTLISTQTFAADLPGKGITVNPVQSTITEETFQTLLVSRALE-KLGYTVNKPSE 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V + SL + W P + + + GA ++
Sbjct: 65 VDYNVGYTSLASGDATFTAVNWTPLHDNMYEAAGGDKKFYREGVFVNGAAQGYLIDKKTA 124
Query: 122 ALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ + + A + G PG I + + +
Sbjct: 125 DQYKITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGWGCEGAINHQLAAYELT-NTVTHN 183
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEEI---------- 218
+ + A + + P + +W P+ ++++ ++ +L
Sbjct: 184 QGNYAAMMADTISRYKEGKPVFYYTWTPYWVSNELKPGKDVVWLQVPFSALPGDKNADTK 243
Query: 219 ------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
GF ++++ V + +K P ++L ++ VA N ++ + K +
Sbjct: 244 LPNGANYGFPVSTMHIVANKAWTEKNPAAAKLFAIMQLPVADINAQNAIMHDGKASEGDI 303
Query: 273 ---GRTMLRTHPDLLKNWLI 289
++ H W+
Sbjct: 304 QGHVDGWIKAHQQQFDGWVN 323
>gi|52424606|ref|YP_087743.1| glycine betaine transporter periplasmic subunit [Mannheimia
succiniciproducens MBEL55E]
gi|52306658|gb|AAU37158.1| ProX protein [Mannheimia succiniciproducens MBEL55E]
Length = 327
Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats.
Identities = 42/323 (13%), Positives = 98/323 (30%), Gaps = 35/323 (10%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI-KLLA 63
+ + + + + ++ + + T + LEE LGY+ N K +
Sbjct: 5 MKLTILFSLALFASNAVRADDKAIQPLQSPLAEETFQTLIVVKALEE-LGYRVNPPKEVD 63
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
V F S+ N +W P A + + ++GA ++
Sbjct: 64 YNVAFTSIANGDATFMAVHWLPLQADKYANAGGDRKLYRQGTFVEGAVQGYMIDKKTADT 123
Query: 124 GIKSY---------QDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
+ + A + G PG + I+ S + + +
Sbjct: 124 YNITNLAQLKDPKLAKLFDTNGNGKADLIGCSPGWSCEYTVSQHIDGYGLS-RTVEVTQG 182
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHP----INSDLNIHYLPGGE-------------- 216
+ A + +N ++ +W P+ + ++ +L
Sbjct: 183 NYSALIANTIAQYQNGKSILYYTWTPYWVSGVLVPGKDVVWLQVPNRPDPGKTVADTNLA 242
Query: 217 --EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNK---QDRQF 271
+ GF +S++ V + D P+ +RL ++ + + N + QD +
Sbjct: 243 NGKNYGFTVSSMHIVANKTFTDAHPDAARLFAVMRLPAGDISAQNMAMRNGQNSSQDIER 302
Query: 272 VGRTMLRTHPDLLKNWLIGVTTF 294
++ H W+ +
Sbjct: 303 HAEAWIKFHRVQFDEWIKQAKSA 325
>gi|313897772|ref|ZP_07831313.1| ABC transporter, substrate-binding protein, QAT family [Clostridium
sp. HGF2]
gi|312957307|gb|EFR38934.1| ABC transporter, substrate-binding protein, QAT family [Clostridium
sp. HGF2]
Length = 523
Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats.
Identities = 37/299 (12%), Positives = 88/299 (29%), Gaps = 33/299 (11%)
Query: 3 KILAVCLFLTTFSISYAR---DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-- 57
K++ L L S S + + ++ M + ++E YK
Sbjct: 226 KLIVSLLCLCLLMASVGGRLMKGVSKDALHIGSSDMSEQLILGNMYADMIEAKTDYKVQR 285
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIA----------------PYLEEGSIK 101
++ L V + F +L+N ID+++ Y + E+ ++
Sbjct: 286 DLSLGGVQICFSALQNGQIDMYVDYTGTLYGDILKMKSNSNADEVYRIAKDKIKEQYNLT 345
Query: 102 LVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN 160
L+ + Y V +K+ D+ K L + L I
Sbjct: 346 LLDQTPFNDTYTFTVRKDTAEKYNLKTVSDLEKVSDRLTITPTLA---FNNRKEALPGIK 402
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISG 220
+ ++ + + + N V ++ + ++ L ++
Sbjct: 403 SKYPNMNF----QDNIAMDGATRYVALANKESDVIDAYSTDGLIDYYDLVVLEDDKQYFL 458
Query: 221 FGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+V L + P+ ++ + S ++ + K++ V L
Sbjct: 459 --PYYGVPMVSEHLLTEYPDAVGVINELSKHLSSEGMRKLNYEVDVKKREPAEVAHEFL 515
>gi|301019055|ref|ZP_07183266.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 69-1]
gi|300399408|gb|EFJ82946.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 69-1]
Length = 330
Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats.
Identities = 41/320 (12%), Positives = 93/320 (29%), Gaps = 36/320 (11%)
Query: 4 ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKL 61
+ A + ++A D V + T+ T + S LE LGY
Sbjct: 6 LFATAFATLISTQTFAADLPGKGITVNPVQSTITEETFQTLLVSRALE-KLGYTVNKPSE 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V + SL + W P + + + GA ++
Sbjct: 65 VDYNVGYTSLASGDATFTAVNWTPLHDNMYEAAGGDKKFYREGVFVNGAAQGYLIDKKTA 124
Query: 122 ALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ + + A + G PG I + + +
Sbjct: 125 DQYKITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGWGCEGAINHQLAAYELT-NTVTHN 183
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEEI---------- 218
+ + A + + P + +W P+ ++++ ++ +L
Sbjct: 184 QGNYAAMMADTISRYKEGKPVFYYTWTPYWVSNELKPGKDVVWLQVPFSALPGDKNADTK 243
Query: 219 ------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
GF ++++ V + +K P ++L ++ VA N ++ K +
Sbjct: 244 LPNGANYGFPVSTMHIVANKAWAEKNPAAAKLFAIMQLPVADINAQNAIMHEGKASEGDI 303
Query: 273 ---GRTMLRTHPDLLKNWLI 289
++ H W+
Sbjct: 304 QGHVDGWIKAHQQQFDGWVN 323
>gi|237735192|ref|ZP_04565673.1| conserved hypothetical protein [Mollicutes bacterium D7]
gi|229381968|gb|EEO32059.1| conserved hypothetical protein [Coprobacillus sp. D7]
Length = 523
Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats.
Identities = 32/298 (10%), Positives = 91/298 (30%), Gaps = 30/298 (10%)
Query: 4 ILAVCLFLTTFSISYARDADSCT-PVRFADTGWTDIAATTAMTSVILEEILGYKTN--IK 60
I+A C+ L + S + +++ M ++E+ + N +
Sbjct: 231 IIATCICLAGSFVYTNLGKTSDKITINIGSMDFSEQEILNYMLKYLIEKNTDVEVNQSLS 290
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFI----------------APYLEEGSIKLVA 104
L + + ++K +D+++ Y + ++ + ++
Sbjct: 291 LGSSSIVLDAMKTGDVDMYVDYTGTIYGSVLGLEPNSDVEAVYNTVKDEMKKQYNFTVLE 350
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKF 164
Y LA++ + + I+ K I+ ++ + +
Sbjct: 351 PLGFNNTYTLAMSKQTADKY--NIETISDLCKVSNQLIFS-PTLTFVERKDCLVGLQETY 407
Query: 165 SLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEA 224
L+ +I NN + ++ + ++ L +
Sbjct: 408 PLQFKEVIPIDGSPR----YTALVNNECDLVDAFSTDGLLKKFDLKVLTDDKNFFL--PY 461
Query: 225 SVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ ++ D+CP I L+ ++ + + ++ + KQ + V L +
Sbjct: 462 NAIPIINQRIKDECPEIIELVNQLQNYLNEEVMIDLNYKVDEEKQKTKDVAYNFLLEN 519
>gi|327394927|dbj|BAK12349.1| glycine betaine-binding periplasmic protein precursor ProX [Pantoea
ananatis AJ13355]
Length = 332
Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats.
Identities = 45/332 (13%), Positives = 93/332 (28%), Gaps = 40/332 (12%)
Query: 1 MYKIL-AVCLFLTTFSISYARDAD---SCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
M K L A L TFS S+A AD V+ + + T + S LE +LGY
Sbjct: 1 MRKTLPAAVAILATFSASHAFAADLPGKGITVKPVQSTIAEETFQTLLVSRGLE-MLGYT 59
Query: 57 TN-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
+ V + ++ + W P + + + GA
Sbjct: 60 VEKPSEVDYNVAYTTIASGDATFLATNWRPLHDDMYKAAGGSQAFYREGTYVSGAAQGYL 119
Query: 116 VNDVGFALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSL 166
++ + + + A + G PG I S
Sbjct: 120 IDKKTAEKYHITNIAQLKDPKIARLFDSNGDGKADMTGCTPGWGCEAVINHQNTAYGLS- 178
Query: 167 KGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEE----- 217
+ A + + P ++ +W P+ ++ ++ +L
Sbjct: 179 NTVTANMGNYSAMIADTLARFKQGKPVLYYTWTPYWLSDVLKPGRDVVWLQVPFSSLPGE 238
Query: 218 ------------ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNN 265
GF +++ V + +K P ++L + + N +
Sbjct: 239 QKGVDTKLANGANYGFPVNTMHIVANKAWAEKNPAAAKLFAEMTLPIGDINAENAAMHAG 298
Query: 266 KQDRQFV---GRTMLRTHPDLLKNWLIGVTTF 294
+ + + ++ H W+
Sbjct: 299 QNSEEDINRHVDGWIKGHQAQFDKWINDARAA 330
>gi|57652261|ref|YP_187250.1| amino acid ABC transporter, amino acid-binding protein
[Staphylococcus aureus subsp. aureus COL]
gi|87161518|ref|YP_495026.1| glycine betaine/carnitine/choline ABC transporter [Staphylococcus
aureus subsp. aureus USA300_FPR3757]
gi|88196380|ref|YP_501203.1| amino acid transporter [Staphylococcus aureus subsp. aureus NCTC
8325]
gi|151222557|ref|YP_001333379.1| glycine betaine/carnitine/choline ABC transporter [Staphylococcus
aureus subsp. aureus str. Newman]
gi|161510645|ref|YP_001576304.1| glycine betaine/L-proline ABC transporter binding protein
[Staphylococcus aureus subsp. aureus USA300_TCH1516]
gi|221140794|ref|ZP_03565287.1| glycine betaine/L-proline ABC transporter binding protein
[Staphylococcus aureus subsp. aureus str. JKD6009]
gi|258451248|ref|ZP_05699281.1| glycine betaine/carnitine/choline ABC transporter [Staphylococcus
aureus A5948]
gi|262048848|ref|ZP_06021729.1| glycine betaine/carnitine/choline ABC transporter opuCC
[Staphylococcus aureus D30]
gi|262051585|ref|ZP_06023806.1| glycine betaine/carnitine/choline ABC transporter opuCC
[Staphylococcus aureus 930918-3]
gi|282920435|ref|ZP_06328158.1| osmoprotectant transport system substrate-binding protein
[Staphylococcus aureus A9765]
gi|284025467|ref|ZP_06379865.1| glycine betaine/carnitine/choline ABC transporter [Staphylococcus
aureus subsp. aureus 132]
gi|294848996|ref|ZP_06789741.1| osmoprotectant transport system substrate-binding protein
[Staphylococcus aureus A9754]
gi|304379646|ref|ZP_07362379.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|57286447|gb|AAW38541.1| amino acid ABC transporter, amino acid-binding protein
[Staphylococcus aureus subsp. aureus COL]
gi|87127492|gb|ABD22006.1| glycine betaine/carnitine/choline ABC transporter [Staphylococcus
aureus subsp. aureus USA300_FPR3757]
gi|87203938|gb|ABD31748.1| amino acid transporter, putative [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|150375357|dbj|BAF68617.1| glycine betaine/carnitine/choline ABC transporter [Staphylococcus
aureus subsp. aureus str. Newman]
gi|160369454|gb|ABX30425.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Staphylococcus aureus
subsp. aureus USA300_TCH1516]
gi|257861040|gb|EEV83855.1| glycine betaine/carnitine/choline ABC transporter [Staphylococcus
aureus A5948]
gi|259160569|gb|EEW45592.1| glycine betaine/carnitine/choline ABC transporter opuCC
[Staphylococcus aureus 930918-3]
gi|259163106|gb|EEW47667.1| glycine betaine/carnitine/choline ABC transporter opuCC
[Staphylococcus aureus D30]
gi|269942028|emb|CBI50440.1| putative glycinebetaine/carnitine/choline-binding lipoprotein
precursor [Staphylococcus aureus subsp. aureus TW20]
gi|282594381|gb|EFB99367.1| osmoprotectant transport system substrate-binding protein
[Staphylococcus aureus A9765]
gi|294824375|gb|EFG40799.1| osmoprotectant transport system substrate-binding protein
[Staphylococcus aureus A9754]
gi|302752316|gb|ADL66493.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Staphylococcus aureus
subsp. aureus str. JKD6008]
gi|304341822|gb|EFM07728.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|315197344|gb|EFU27681.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Staphylococcus aureus
subsp. aureus CGS01]
gi|320139153|gb|EFW31035.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Staphylococcus aureus subsp.
aureus MRSA131]
gi|320142593|gb|EFW34401.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Staphylococcus aureus subsp.
aureus MRSA177]
gi|329315132|gb|AEB89545.1| Glycine betaine/carnitine/choline ABC transporter [Staphylococcus
aureus subsp. aureus T0131]
gi|329726729|gb|EGG63190.1| glycine betaine/carnitine/choline-binding protein [Staphylococcus
aureus subsp. aureus 21189]
Length = 313
Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats.
Identities = 31/308 (10%), Positives = 78/308 (25%), Gaps = 34/308 (11%)
Query: 1 MYKI-------LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL 53
M KI + L+ S+ + V+ ++ + M +++E
Sbjct: 1 MKKIKYILVVFVLSLTVLSGCSLPGLGSKSTKNDVKITALSTSESQIISHMLRLLIEHDT 60
Query: 54 GYKTNIKL----LAVPVTFRSLKNKGIDIF-MGYWYPSLEKFIAPYL------------- 95
K L + + +L N +I + Y L +
Sbjct: 61 HGKIKPTLVNNLGSSTIQHNALINGDANISGVRYNGTDLTGALKEAPIKNPKKAMIATQQ 120
Query: 96 -EEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQR 154
+ + G A + ++ K G++ +
Sbjct: 121 GFKKKFDQTFFDSYGFANTYAFMVTKETAKKYHLETVSDLAKHSKDLRLGMDSSWMNRKG 180
Query: 155 ILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPG 214
++ + + + V L + + ++ L
Sbjct: 181 DGYEGFKKEYGFDFGTVRP----MQIGLVYDALNSEKLDVALGYSTDGRIAAYDLKVLKD 236
Query: 215 GEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFV 272
+ F + V ++ L + P + + + K S + + ++ V
Sbjct: 237 --DKQFFPPYAASAVATNELLRQHPELKTTINKLTGKISTSEMQRLNYEADGKGKEPAVV 294
Query: 273 GRTMLRTH 280
L+ H
Sbjct: 295 AEEFLKKH 302
>gi|318606881|emb|CBY28379.1| L-proline glycine betaine binding ABC transporter protein ProX
[Yersinia enterocolitica subsp. palearctica Y11]
Length = 326
Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats.
Identities = 41/327 (12%), Positives = 93/327 (28%), Gaps = 36/327 (11%)
Query: 7 VCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVP 65
L + +S A V+ + ++ T++ + LE LGY K +
Sbjct: 2 ALTTLISTQLSAAELPGKGITVQPLQSTISEETFQTSLVNKALE-KLGYNVQPTKEVDYN 60
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
V + S+ W P A + ++G ++
Sbjct: 61 VAYSSIAAGDATYLAVNWEPLHNDQYAAAGGDAKFYRQGNFIEGLAQGYLIDKKTADKYH 120
Query: 126 KSYQD---------IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ + + + A + G PG I I S + +
Sbjct: 121 ITNIEQLKDPKIAKLFDANNDGKADLTGCNPGWGCEAPINHQIQAYGLSDT-VTHNQGNY 179
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHP----INSDLNIHYLPGGEE--------------- 217
A + + P ++ +W P+ + ++ +L
Sbjct: 180 AAMIADTITRYKEGKPILYYTWTPYWVSDVLVPGRDVVWLQVPFSSLPDKTIDTQLSNGA 239
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI---LNNKQDRQFVGR 274
GF + ++ V + + P ++L +K S+ N + ++ D +
Sbjct: 240 NYGFPPSVMHIVANKKWAEANPAAAKLFSIMKLSINDVNAQNMRMHAGESSDADIERHVN 299
Query: 275 TMLRTHPDLLKNWLIGVTTFDGQDPSR 301
++ H W+ T + +
Sbjct: 300 GWIQAHQATFDGWVK--TAAEAGNAQA 324
>gi|315640921|ref|ZP_07896017.1| glycine/betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, binding protein [Enterococcus
italicus DSM 15952]
gi|315483339|gb|EFU73839.1| glycine/betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, binding protein [Enterococcus
italicus DSM 15952]
Length = 306
Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats.
Identities = 27/309 (8%), Positives = 80/309 (25%), Gaps = 36/309 (11%)
Query: 1 MYK---ILAVCLFLTTFSISYA----RDADSCTPVRFADTGWTDIAATTAMTSVILEEIL 53
M + I+ +C F S + +DS + ++ ++ + ++E
Sbjct: 1 MKRKSYIIVLCFSFLVFLASCSLPGLSSSDSKKTITITGGITSESQILASLVAGMIEHYT 60
Query: 54 GYKTNIKL--LAVPVTFRSLKNKGIDIFMGYW-----------------YPSLEKFIAPY 94
K I + +++ N I + + + +
Sbjct: 61 DNKVTIINNLATTTINHQAMMNGDAQISAARYTGTDLTTTLGLDPVKDPTEAYDIVSKEF 120
Query: 95 LEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQR 154
+ + + Y+ V S K + + G++P
Sbjct: 121 EKRYNETWLKPYGFDNTYVYLVTKETAEKYHLSKVSDLKNVADQLSA--GVDPAWITRAG 178
Query: 155 ILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPG 214
+ + ++ + + L + ++ L
Sbjct: 179 DGYEGFKKAYGFEFKTILP----MQIGLVYDAVAAGKMDIVLGYSTDGRIGSYDLVMLED 234
Query: 215 GEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFV 272
++ ++ + L + P + ++ + S ++ NN + V
Sbjct: 235 DKKFF--PPYDAVPIIDNKLLKEQPKLQEIIDKLAGTISTDEMQKLNFEADNNLVEPSVV 292
Query: 273 GRTMLRTHP 281
+ L +
Sbjct: 293 AKEFLEKNR 301
>gi|282854621|ref|ZP_06263956.1| ABC transporter, substrate-binding protein, QAT family
[Propionibacterium acnes J139]
gi|282582203|gb|EFB87585.1| ABC transporter, substrate-binding protein, QAT family
[Propionibacterium acnes J139]
gi|327328059|gb|EGE69828.1| substrate binding component of glycine/betaine transport system
[Propionibacterium acnes HL103PA1]
Length = 335
Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats.
Identities = 49/269 (18%), Positives = 95/269 (35%), Gaps = 12/269 (4%)
Query: 23 DSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMG 81
D + W + AT + +LE+ GYK IK + L ID+
Sbjct: 65 DGKKDITIGAFNGWDESFATAGIMKNVLEKD-GYKVTIKGFDAGPGYAGLVAGDIDLLTD 123
Query: 82 YWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAK 141
W P + ++ + AK +AVN A ++ D+ E
Sbjct: 124 GWLPVTHADYVKRYGD-KMENLGCWYDNAKLTIAVNKDSKA---RTIGDLKTMGDEYDNT 179
Query: 142 IYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPH 201
+YGIE G + D K+ LK +S A +Q+++ W PH
Sbjct: 180 LYGIEAGAGLTKATKDSA-IPKYGLKNLNFKISSTPAMLAQLKKSTSAGQDIAVTLWRPH 238
Query: 202 PINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKL 261
+ L ++ G E +Y+ R + P +++L++N+ F +++
Sbjct: 239 WAYGAFPVRDLKDPKKAMGNAE-VIYSFGRPGFEQDFPKVAQLVRNMAFDDNKLSDLEDT 297
Query: 262 I----LNNKQDRQFVGRTMLRTHPDLLKN 286
+ ++++ + + D +
Sbjct: 298 MFSADKYGGKNQEKAVEEWISRNNDWVDK 326
>gi|319400155|gb|EFV88390.1| choline-binding protein [Staphylococcus epidermidis FRI909]
Length = 314
Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats.
Identities = 31/309 (10%), Positives = 80/309 (25%), Gaps = 35/309 (11%)
Query: 1 MYK--------ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEI 52
M K + + L+ S+ D ++ V+ T ++ M +++E
Sbjct: 1 MKKYFNYTLILVALSLIVLSGCSLPGLGDGNAKDDVKITTTETSETKIIGHMEKLLIEHE 60
Query: 53 LGYKTNIKL----LAVPVTFRSLKNKGIDIFMGYWY---------------PSLEKFIAP 93
K L + + +L+ ++ + P
Sbjct: 61 TDGKIKPTLIGNLGSSIIQHNALQRGDANMSAVRYTGTELTSVLAAKPTKDPEKAMSETQ 120
Query: 94 YLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQ 153
L + + G A + ++ +K G++
Sbjct: 121 RLFKKKYDEKFYHSLGFANTYAFMVTKETAKKYHLEKVSDLEKYKDELRLGMDTQWMNRA 180
Query: 154 RILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLP 213
+ K +++ + +NN V + + + ++ L
Sbjct: 181 GDGYPAFVKDYGFKF----DSARPMQIGLVYDALKNNKLDVAVGYSTDGRIAAYDLKILE 236
Query: 214 GGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQF 271
+ + + P I + LK + K S ++ ++
Sbjct: 237 DDRKFF--PPYDGSPLANEQLIKDNPEIDKALKKLEGKISTEEMQKLNYEADGKGKEPAV 294
Query: 272 VGRTMLRTH 280
+ L+ H
Sbjct: 295 IAEEYLKKH 303
>gi|118591607|ref|ZP_01549004.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Stappia aggregata IAM 12614]
gi|118435935|gb|EAV42579.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Stappia aggregata IAM 12614]
Length = 317
Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats.
Identities = 42/313 (13%), Positives = 93/313 (29%), Gaps = 32/313 (10%)
Query: 8 CLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVT 67
+ +++F + A + V W T + +L E LG +T ++
Sbjct: 6 SILMSSFLAAAAANPVRADAVVIGVPAWPSAQVTAHIIHDVLNERLGVETELRERGTLTI 65
Query: 68 FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML-AVNDVGFALGIK 126
+ I + W+P+L EE + ++ A + A GIK
Sbjct: 66 LSDIGRGDIQVHPEVWFPNLSAMATRLSEEKQVLSLSPISVAATQNICATRATVEQTGIK 125
Query: 127 SYQDIAKYKKELGAKIYG--------IEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ D+ K + G P + ++ + L+E E
Sbjct: 126 AVADLVKPEMAAQFDSDGDGRGEIWIGAPSWSSTEIEKIRAHSYGYDQT-MTLLEMPEDV 184
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG-------------EEISGFGEAS 225
+ + + P VF + PH + +I L ++ ++
Sbjct: 185 AMAAVDAAVSFGKPVVFYCYGPHHVFELHDIVKLEEPAYDPARWTIVTRAQDNDWLAKSH 244
Query: 226 VYTVV---------RSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
T + P ++ L ++ + M ++ + + V +
Sbjct: 245 ADTAWDASSFKIAFATSLETGMPEVASFLSKMELTPEDVTAMSYAVVVEGKPAEDVAKDW 304
Query: 277 LRTHPDLLKNWLI 289
+ + D + W
Sbjct: 305 IAANADRIGEWTK 317
>gi|21284099|ref|NP_647187.1| glycine betaine/carnitine/choline ABC transporter opuCC
(osmoprotec) [Staphylococcus aureus subsp. aureus MW2]
gi|49487229|ref|YP_044450.1| putative glycine betaine/carnitine/choline-binding lipoprotein
precursor [Staphylococcus aureus subsp. aureus MSSA476]
gi|253730124|ref|ZP_04864289.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Staphylococcus aureus
subsp. aureus USA300_TCH959]
gi|297209733|ref|ZP_06926129.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Staphylococcus aureus
subsp. aureus ATCC 51811]
gi|300910745|ref|ZP_07128195.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Staphylococcus aureus
subsp. aureus TCH70]
gi|21205542|dbj|BAB96235.1| glycine betaine/carnitine/choline ABC transporter opuCC
[Staphylococcus aureus subsp. aureus MW2]
gi|49245672|emb|CAG44151.1| putative glycine betaine/carnitine/choline-binding lipoprotein
precursor [Staphylococcus aureus subsp. aureus MSSA476]
gi|253726152|gb|EES94881.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Staphylococcus aureus
subsp. aureus USA300_TCH959]
gi|296885406|gb|EFH24343.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Staphylococcus aureus
subsp. aureus ATCC 51811]
gi|300887725|gb|EFK82920.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Staphylococcus aureus
subsp. aureus TCH70]
gi|323439675|gb|EGA97394.1| betaine-carnitine-choline ABC transporter [Staphylococcus aureus
O11]
gi|323442660|gb|EGB00287.1| betaine-carnitine-choline ABC transporter [Staphylococcus aureus
O46]
gi|329730293|gb|EGG66683.1| glycine betaine/carnitine/choline-binding protein [Staphylococcus
aureus subsp. aureus 21193]
Length = 313
Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats.
Identities = 31/308 (10%), Positives = 78/308 (25%), Gaps = 34/308 (11%)
Query: 1 MYKI-------LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL 53
M KI + L+ S+ + V+ ++ + M +++E
Sbjct: 1 MKKIKYILVVFVLSLTVLSGCSLPGLGSKSTKNDVKITALSTSESQIISHMLRLLIEHDT 60
Query: 54 GYKTNIKL----LAVPVTFRSLKNKGIDIF-MGYWYPSLEKFIAPYL------------- 95
K L + + +L N +I + Y L +
Sbjct: 61 HGKIKPTLVNNLGSSTIQHNALINGDANISGVRYNGTDLTGALKEAPIKDPKKAMIATQQ 120
Query: 96 -EEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQR 154
+ + G A + ++ K G++ +
Sbjct: 121 GFKKKFDQTFFDSYGFANTYAFMVTKETAKKYHLETVSDLAKHSKDLRLGMDSSWMNRKG 180
Query: 155 ILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPG 214
++ + + + V L + + ++ L
Sbjct: 181 DGYEGFKKEYGFDFGTVRP----MQIGLVYDALNSEKLDVALGYSTDGRIAAYDLKVLKD 236
Query: 215 GEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFV 272
+ F + V ++ L + P + + + K S + + ++ V
Sbjct: 237 --DKQFFPPYAASAVATNELLRQHPELKTTINKLTGKISTSEMQRLNYEADGKGKEPAVV 294
Query: 273 GRTMLRTH 280
L+ H
Sbjct: 295 AEEFLKKH 302
>gi|293394760|ref|ZP_06639051.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Serratia odorifera DSM
4582]
gi|291422711|gb|EFE95949.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Serratia odorifera DSM
4582]
Length = 331
Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats.
Identities = 41/321 (12%), Positives = 89/321 (27%), Gaps = 37/321 (11%)
Query: 4 ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK-L 61
I A L + ++A D V+ + + + T + + LE LGY
Sbjct: 6 IWAFALTSLLGTQAFAADLPGKGVTVKPLQSTIAEESFQTELVNRALE-KLGYDVQPTGE 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V + S+ + W P E + A ++
Sbjct: 65 VDYNVAYTSIASGDATYMAVNWDPLQTDMFNNAGGEQKFYRQGAYITNAAQGYLIDKKTA 124
Query: 122 ALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ + + A + G EPG + I I + S
Sbjct: 125 DKYHITDISQLKEPKLAQLFDADGDGKADLAGCEPGWVCGRVIDTQIKSYGLSAT-VTQN 183
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEP----HPINSDLNIHYLPGGE------------ 216
+ + A + + P ++ +W P + ++ +L
Sbjct: 184 QGNYSAIIADTLSRFKQGKPVLYFTWTPYWVSDELVPGRDVVWLTVPFSANPGSLKDLDT 243
Query: 217 -----EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQF 271
+ GF + + V + P ++L ++ +A N + N +
Sbjct: 244 ALPNGKNYGFPVNNEHIVANKQWAQANPAAAKLFAIMQLPLADVNAQNLRMHNGENSADD 303
Query: 272 V---GRTMLRTHPDLLKNWLI 289
+ ++ H W+
Sbjct: 304 IQRHVDGWIKAHQATFDGWVS 324
>gi|108803823|ref|YP_643760.1| substrate-binding region of ABC-type glycine betaine transport
system [Rubrobacter xylanophilus DSM 9941]
gi|108765066|gb|ABG03948.1| Substrate-binding region of ABC-type glycine betaine transport
system [Rubrobacter xylanophilus DSM 9941]
Length = 319
Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats.
Identities = 37/276 (13%), Positives = 76/276 (27%), Gaps = 33/276 (11%)
Query: 28 VRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPVTFRSLKNKGIDIFMGYWYP 85
+ +T+ M ++ LE+ G+K + L + + R+L+N ID++ Y
Sbjct: 46 ITVGSKNFTEQYILGNMYALALEDA-GFKVERRLNLGSEQIADRALQNGQIDLYPEYTGT 104
Query: 86 SLEKFIA---------------------PYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
+L + + + ++ Y + V
Sbjct: 105 ALAAVLDYEGDPAQLDTPEQTYQRAKELYAGRDPADTMLRPAPFNNTYGIFVRREAAERY 164
Query: 125 IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
+ + +M N I S
Sbjct: 165 DLRTLEDLA-EASPNLVFVSFSEFQGREDGFPNMKENYPALDFKDVEIVNSIGLR----Y 219
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
+ V + + + + L S + VVR++ L+K P I +
Sbjct: 220 QGVLQGEGDVGVGFTTDGQLASDRLVVLEDP--KSIWPFYQPAPVVRTEVLEKNPKIREV 277
Query: 245 LKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
L + V + + K+D + V R L
Sbjct: 278 LNEVSASLDVETMRRLNGRVDLQKEDPEDVAREYLE 313
>gi|242372396|ref|ZP_04817970.1| periplasmic component of proline glycine betaine ABC superfamily
ATP binding cassette transporter [Staphylococcus
epidermidis M23864:W1]
gi|242349915|gb|EES41516.1| periplasmic component of proline glycine betaine ABC superfamily
ATP binding cassette transporter [Staphylococcus
epidermidis M23864:W1]
Length = 312
Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats.
Identities = 49/291 (16%), Positives = 105/291 (36%), Gaps = 14/291 (4%)
Query: 12 TTFSISYARDADS------CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA-V 64
+ + +D V + + + + +L++ GY +
Sbjct: 23 SACGNGGSGSSDDGNTSLGKKEVTIPYIASDNSTPRSLVIAEVLKKA-GYDVTTTPVQAS 81
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEK-FIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+ S+ +PS +K F + + ++ + K LAV +
Sbjct: 82 GPLYASVSQDSDSFHASGIFPSTDKSFYNKFKSQLTVYDKKNLVDNVKVGLAVPKYERNI 141
Query: 124 GIKSYQDIAKYK-KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
S + +K K + I G + N ++ ++ L +RL ++S+ F
Sbjct: 142 DSISDLNSSKSFGKSVDWTIQGTDDRNGVMKQTKSELD--DGQLDQYRLHKSSDQDQFKA 199
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
I++ + P VF + EP + +L+I L E+I G + + V + P
Sbjct: 200 IQKAYKQQKPIVFTAMEPSWFSKELDIKMLKDPEKIYGKDDEHINLVFNKGFQKNHPAAY 259
Query: 243 RLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGV 291
+ I +S E ++ K I + ++ + V + + H + WL G+
Sbjct: 260 TIATRISDNWSKDDEEQLAKKIFKDNKNPEDVAKDYVDDHETKVDKWLKGI 310
>gi|326628869|gb|EGE35212.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Gallinarum str. 9]
Length = 349
Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats.
Identities = 43/321 (13%), Positives = 89/321 (27%), Gaps = 37/321 (11%)
Query: 4 ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKL 61
I A + ++A D V+ + ++ T + S LE LGY
Sbjct: 24 IFASAFATLVTASAFAADLPGKGITVQPIQSTISEETFQTLLVSRALE-KLGYTVNKPSE 82
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V + S+ + W P + A + + GA ++
Sbjct: 83 VDYNVGYTSIASGDATFTAVNWQPLHDDMYAAAGGDNKFYREGVFVSGAAQGYLIDKKTA 142
Query: 122 ALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ I + A + G PG I K +
Sbjct: 143 EQYNITNIAQLKDPKIAKIFDTNGDGKADMMGCSPGWGCEAVINHQNKAFDL-QKTVEVS 201
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI-------------- 218
+ A + + P ++ +W P+ ++ + ++
Sbjct: 202 HGNYAAMMADTITRFKEGKPVLYYTWTPYWVSDVMKPGKDVVWLQVPFSSLPGEQKNIDT 261
Query: 219 -------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQF 271
GF +++ V + +K P ++L +K +A N ++ K
Sbjct: 262 KLPNGANYGFPVNTMHIVANKAWAEKNPAAAKLFAIMKLPLADINAQNAMMHAGKSSEAD 321
Query: 272 V---GRTMLRTHPDLLKNWLI 289
V + H W+
Sbjct: 322 VQGHVDGWINAHQQQFDGWVK 342
>gi|327334272|gb|EGE75986.1| substrate binding component of glycine/betaine transport system
[Propionibacterium acnes HL097PA1]
Length = 339
Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats.
Identities = 50/275 (18%), Positives = 98/275 (35%), Gaps = 12/275 (4%)
Query: 17 SYARDADSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKG 75
+ + AD + W + AT + +LE+ GYK IK + L
Sbjct: 63 TTSMKADGKKDITIGAFNGWGESFATAGIMKNVLEKD-GYKVTIKGFDAGPGYAGLVAGD 121
Query: 76 IDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK 135
ID+ W P + ++ + AK +AVN A ++ D+
Sbjct: 122 IDLLTDGWLPVTHADYVKRYGD-KMENLGCWYDNAKLTIAVNKDSKA---RTIGDLKTMG 177
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
E +YGIE G + D K+ LK +S A +Q+++
Sbjct: 178 DEYDNTLYGIEAGAGLTKATKDSA-IPKYGLKNLNFKISSTPAMLAQLKKSTSAGQDIAV 236
Query: 196 LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
W PH + L ++ G E +Y+ R + P +++L++N+ F
Sbjct: 237 TLWRPHWAYGAFPVRDLKDPKKAMGNAE-VIYSFGRPGFEQDFPKVAQLVRNMAFDDNKL 295
Query: 256 NEMMKLI----LNNKQDRQFVGRTMLRTHPDLLKN 286
+++ + ++++ + + D +
Sbjct: 296 SDLEDTMFSADKYGGKNQEKAVEEWISRNNDWVDK 330
>gi|238750478|ref|ZP_04611979.1| Osmoprotectant transport protein OusBX [Yersinia rohdei ATCC 43380]
gi|238711409|gb|EEQ03626.1| Osmoprotectant transport protein OusBX [Yersinia rohdei ATCC 43380]
Length = 331
Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats.
Identities = 39/316 (12%), Positives = 89/316 (28%), Gaps = 34/316 (10%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAV 64
L + +S A V+ + ++ T++ + LE LGY K +
Sbjct: 9 LALTTLISTQLSAAELPGKGISVQPLQSTISEETFQTSLVNKALE-KLGYDVQPTKEVDY 67
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
V + S+ W P + ++G ++
Sbjct: 68 NVAYASIAAGDATYLAVNWEPLHNDQYDSAGGDAKFYRQGNFIEGLAQGYLIDKKTADKY 127
Query: 125 IKSYQD---------IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
+ + + + A + G PG I I S + +
Sbjct: 128 HITNIEQLKDPKIAKLFDANNDGKADLTGCNPGWGCEAPINHQIQAYGLSDT-VTHNQGN 186
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHP----INSDLNIHYLPGGEE-------------- 217
A + + P ++ +W P+ + ++ +L
Sbjct: 187 YAAMIADTITRYKEGKPILYYTWTPYWVSDVLVPGRDVVWLQVPFSSLPDKTIDTQLSNG 246
Query: 218 -ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI---LNNKQDRQFVG 273
GF + ++ V + + P ++L +K S+ N + ++ D +
Sbjct: 247 ANYGFPPSVMHIVANKKWAEANPAAAKLFSIMKLSINDVNAQNMRMHAGESSDADIERHV 306
Query: 274 RTMLRTHPDLLKNWLI 289
++ H W+
Sbjct: 307 NGWIQAHQATFDGWVS 322
>gi|321312918|ref|YP_004205205.1| choline ABC transporter choline-binding lipoprotein [Bacillus
subtilis BSn5]
gi|320019192|gb|ADV94178.1| choline ABC transporter (choline-binding lipoprotein) [Bacillus
subtilis BSn5]
Length = 304
Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats.
Identities = 34/300 (11%), Positives = 79/300 (26%), Gaps = 26/300 (8%)
Query: 1 MYKILAVCLFLTTFSISYAR-DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+ ++ + L T S A + ++ ++ +M ++E KT
Sbjct: 6 LKLMIGLALAATLSGCSLPGLSAAADQIIKIGAQSMSESEIIASMLGQLIEHHTDLKTTT 65
Query: 60 KLLAVPVTFRSLK--NKGIDIFMGYWY---------------PSLEKFIAPYLEEGSIKL 102
+ N IDI + P + + L
Sbjct: 66 IKNLGSNAVQQQALMNGEIDIAATRYTGDALTGTLRMQPEKDPDKALALTQREFKKRYDL 125
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
+ G A + ++ KK G++ +
Sbjct: 126 KWYDSYGFDNTYAFTVSKELADQYHLETVSDVKKWAPQLKLGVDNYWMKLKGNGYQDFTK 185
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
+ + + + ++ + L++ + L + F
Sbjct: 186 TYGMTFG----GTYPMQIGLVYDAVKSGKMDIVLAYSTDGRIKSYGLKMLKD--DKQFFP 239
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
VV L + P + ++K + K A+ E+ + N ++ V + L H
Sbjct: 240 PYDCSPVVPEKVLKEHPELEGIIKKMLGKIDTAMMQELNYEVDGNLKEPSVVAKEYLEKH 299
>gi|126737992|ref|ZP_01753722.1| hypothetical protein RSK20926_20162 [Roseobacter sp. SK209-2-6]
gi|126721385|gb|EBA18089.1| hypothetical protein RSK20926_20162 [Roseobacter sp. SK209-2-6]
Length = 266
Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats.
Identities = 43/266 (16%), Positives = 93/266 (34%), Gaps = 6/266 (2%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWY 84
P+ + A A+ +LE G+K +K + + +D+ + W
Sbjct: 2 SKPMVVGQIDLSFHKAAAAVICELLE-RTGHKVELKEAPHEDMYAMQRGGEVDLVVSAWL 60
Query: 85 PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKE--LGAKI 142
P+ + +L+ ++ Y + I+S D+A+ + +I
Sbjct: 61 PASHGTY---IAPYKDELLKLSVLYQPYCIWGISDQAPQHIRSVTDLARPEVAALFRKRI 117
Query: 143 YGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP 202
GI G ++ M+ + + +GF + S + A+ W P
Sbjct: 118 QGIGTGAGISRFSRQMLKDYQLDAQGFHFENGTLEDCTSAYLEAESAGDLAIVPLWHPQW 177
Query: 203 INSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI 262
+NS N+ L + G +A+ + R P LL+ I+ L +++ + I
Sbjct: 178 LNSQRNLRELEDPLGLLGGQDAATLVLRRDAAHKLTPQGRTLLERIQLGNDLVSQLDREI 237
Query: 263 LNNKQDRQFVGRTMLRTHPDLLKNWL 288
+ + + + + + WL
Sbjct: 238 CCDGKTPRDAAIAWINANHAQCEAWL 263
>gi|73663825|ref|YP_302604.1| putative periplasmic component of ABC-type proline glycine betaine
transport system [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|72496402|dbj|BAE19659.1| putative periplasmic component of ABC-type proline glycine betaine
transport system [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 308
Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats.
Identities = 48/272 (17%), Positives = 107/272 (39%), Gaps = 8/272 (2%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA-VPVTFRSLKNKGIDIFMGYW 83
+ G + AA + + + +L++ GY+ + + +
Sbjct: 40 GKEIEIPYKG-DNSAARSLVIAEVLKDA-GYEVITTPMPASGPMYATTSENANTFNASGI 97
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKI 142
+PS +K + + AK LAV + I +D K + I
Sbjct: 98 FPSTDKSYLNQYSNLEVYDKKNLIDKAKVSLAVPKYMDDVDSIDDLKDNKDLGKSVDWNI 157
Query: 143 YGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP 202
G + N + + + ++ F+ + L ++S+ S++++ + P +F +PH
Sbjct: 158 TGTDDRNGVMKETNEALQDDDFND--WNLNKSSDEEMLSELQKKYKKQEPIIFTGAKPHW 215
Query: 203 INSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMK 260
I ++++ L +++ G G+ + V ++ D+ P ++ I ++ EN++ K
Sbjct: 216 IFEEMDLKMLKDPDKVYGSGDEHINLVFNKNFKDEHPAAYKIATRIADDWNEEDENKLSK 275
Query: 261 LILNNKQDRQFVGRTMLRTHPDLLKNWLIGVT 292
I +K+D Q V + H WL G+
Sbjct: 276 RIYVDKEDPQKVAEEYVDGHESKKDKWLEGIQ 307
>gi|228476197|ref|ZP_04060901.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Staphylococcus hominis SK119]
gi|228269746|gb|EEK11244.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Staphylococcus hominis SK119]
Length = 314
Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats.
Identities = 44/272 (16%), Positives = 105/272 (38%), Gaps = 7/272 (2%)
Query: 26 TPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA-VPVTFRSLKNKGIDIFMGYWY 84
+ + + + + +L++ GY + + ++ +
Sbjct: 45 KEIEIPYIASDNSTPRSLVIAEVLKKA-GYDVTTTPVTASGPLYATVSENSDSFHASGIF 103
Query: 85 PSLEK-FIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIY 143
P+ +K + + + +I + AK LAV + S + + K + I
Sbjct: 104 PTTDKSYYDKFKSKLTIYDDKHLIDNAKVGLAVPKYVQDVDSISDLKNSDFGKSVDWTIQ 163
Query: 144 GIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPI 203
G + N Q D ++++ + L E+S+ F +I+ + P VF S EP
Sbjct: 164 GTDARNGVMQETKDELDSDNLDK--YSLKESSDQDQFKKIQSAFKQQEPIVFTSMEPSWF 221
Query: 204 NSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKL 261
+ +L++ L + I G + V ++ + P + + +S + E+++ K
Sbjct: 222 SKELDVKMLKDPDNIYGNNNQHIDLVFNKNFKEAHPAAYTIATRMADDWSKSDEDKLAKK 281
Query: 262 ILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
I + ++ + V + + + + + WL G+ T
Sbjct: 282 IFVDNKNPEQVAKDYVDDNDNKVDEWLEGIET 313
>gi|158336793|ref|YP_001517967.1| glycine/ betaine ABC transporter periplasmic component
[Acaryochloris marina MBIC11017]
gi|158307034|gb|ABW28651.1| glycine/ betaine ABC transporter, periplasmic component, putative
[Acaryochloris marina MBIC11017]
Length = 313
Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats.
Identities = 38/296 (12%), Positives = 88/296 (29%), Gaps = 29/296 (9%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILE-EILGYKTNIKLL 62
I + F + D + +R +T+ + + +LE + L + L
Sbjct: 20 IAVLTCFTIVACQVGSGDEATDNVIRVGSKDFTEQFILGELYAQLLEDQDLAVERKFNLG 79
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP----------------YLEEGSIKLVAEN 106
P+ L ID++ Y +L + Y ++ ++ +
Sbjct: 80 GAPIAQAGLVKGDIDLYPEYTGTALLTILKEPSNTNPQQVFDTVAKAYEKDFNLVWLNPA 139
Query: 107 LQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFS 165
L V +K+ D AK +L ++ G + +
Sbjct: 140 PMNNTQALVVTPATAKKYQLKTISDFAKQATKL--RMIGPPEFAAREDGLPGLQAAYGAF 197
Query: 166 LKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEAS 225
+ + +++ + + + LN+ L + +
Sbjct: 198 KLKDYI-----ATDPGLRYQALQSDQADIAVGFGTDGEIDALNLVVLKDDQGLF--PPYQ 250
Query: 226 VYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
V VVR L+ + L + K + + + N+Q+ + V + L+
Sbjct: 251 VAPVVRQPVLEAYAKVKGTLNALAPKLTDETMRRLNYEVSGNRQEPRTVAQQFLQE 306
>gi|311278366|ref|YP_003940597.1| Substrate-binding region of ABC-type glycine betaine transport
system [Enterobacter cloacae SCF1]
gi|308747561|gb|ADO47313.1| Substrate-binding region of ABC-type glycine betaine transport
system [Enterobacter cloacae SCF1]
Length = 331
Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats.
Identities = 44/320 (13%), Positives = 91/320 (28%), Gaps = 37/320 (11%)
Query: 4 ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKL 61
I A + S A + V+ + ++ T + S LE LGY N
Sbjct: 6 IFATAFAAFVSASSVAAELPGKGITVQPVQSTISEETFQTLLVSRALE-KLGYTVNAPSE 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V + S+ + W P + A + + GA ++
Sbjct: 65 VDYNVGYTSIASGDATFTAVNWQPLHDDMYAAAGGDKKFYREGVFVTGAAQGYLIDKKTA 124
Query: 122 ALGI---------KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ + A + G PG I I S
Sbjct: 125 EKYHIASIDRLKDPQIARLFDTNGDGKADLTGCTPGWGCEAVINHQIGAYGLS-NTVVHN 183
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEE----------- 217
+ + A + + P ++ +W P+ ++ ++ +L
Sbjct: 184 QGNYAAMMADTITRYKEGKPVLYYTWTPYWVSDVLKPGKDVVWLQVPFSSMPGEQKDIDT 243
Query: 218 ------ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQF 271
GF +++ V + +K P ++L +K +A N ++ +
Sbjct: 244 KLPNGANYGFPVNTMHIVANKAWAEKNPAAAKLFSLMKLPIADINAQNAMMHEGHASQAD 303
Query: 272 V---GRTMLRTHPDLLKNWL 288
+ + H L W+
Sbjct: 304 IQGHVDGWIGAHQQLFDGWI 323
>gi|281491337|ref|YP_003353317.1| glycine betaine ABC transporter permease/substrate-binding protein
[Lactococcus lactis subsp. lactis KF147]
gi|281375078|gb|ADA64596.1| Glycine betaine ABC transporter, permease and substrate-binding
protein [Lactococcus lactis subsp. lactis KF147]
Length = 500
Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats.
Identities = 33/301 (10%), Positives = 77/301 (25%), Gaps = 34/301 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCT--PVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
+ IL + + A + M +++E+ + N
Sbjct: 206 IKTILISFFIGLLVLGGSYYRPQTSNHPQITIAGKLGAEPDVLINMYKLMIEKDSNIRVN 265
Query: 59 IK--LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA------------ 104
+K + +LK ID++ + F+ + +V
Sbjct: 266 LKSNFGDTTFLYNALKAGKIDLYPEFTGTITSTFLKDPVSSTDPNVVWQKAEEGIKKLNQ 325
Query: 105 -----ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI 159
Y +AV + + L A + + +
Sbjct: 326 FTYLSPMKFQDTYAIAVKSDFAKEHQLTKISDLENVSGLTAGF--DVEFANRSDGNIGLR 383
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
L + + I + + V + N+ L + +
Sbjct: 384 KLYGLDLNVKTMQNS-------LIYKALNSGAVNVAEVYSTDSQIKQYNLTVLKDDKNLF 436
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+++ L K P + ++L + K + EM + ++D V L
Sbjct: 437 --PPYQAAPLMKESLLKKYPELKKILNKLSGKITDQEMIEMNYDVNVKQEDAAKVAERYL 494
Query: 278 R 278
+
Sbjct: 495 K 495
>gi|138893953|ref|YP_001124406.1| proline/glycine betaine ABC transporter permease/periplasmic
protein [Geobacillus thermodenitrificans NG80-2]
gi|196250494|ref|ZP_03149185.1| Substrate-binding region of ABC-type glycine betaine transport
system [Geobacillus sp. G11MC16]
gi|134265466|gb|ABO65661.1| Proline/glycine betaine ABC-type transport system, permease
component fused to periplasmic component [Geobacillus
thermodenitrificans NG80-2]
gi|196209984|gb|EDY04752.1| Substrate-binding region of ABC-type glycine betaine transport
system [Geobacillus sp. G11MC16]
Length = 300
Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats.
Identities = 34/284 (11%), Positives = 84/284 (29%), Gaps = 33/284 (11%)
Query: 18 YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKG 75
+ +D+ + +T+ T + + ++ +K + ++++N
Sbjct: 21 CSGKSDAKGKIVITGKKFTEQMILTHVLAEYVKANTDLDVEVKESLGGAFMLQQAIENGD 80
Query: 76 IDIFMGYWYPSLEKFIAP------------------YLEEGSIKLVAENLQGAKYMLAVN 117
ID+++ Y + Y E+ +I + Y LA+
Sbjct: 81 IDMYVEYTGTGYLNILKQPYDPTKTPEQIYNETKKLYKEKYNIAWLKSLGFNNTYALAMR 140
Query: 118 DVGFAL-GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
G+K+Y D+ + E + +++ F K I+
Sbjct: 141 RDLAEKLGVKTYSDLVNH--SSSLTFGSDAEFFERSDGYDGLVDTYGFHFKKTVNIDPDL 198
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
+N V ++ ++ L + F ++R + LD
Sbjct: 199 Q------YEAAKNGKIDVITAYTTDARIKKYDLVVLKD--DKQYFPPYYAVPIIRQEVLD 250
Query: 237 KCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLR 278
P + L + + E+ + + + V L+
Sbjct: 251 ANPGLEEKLNQLANILTDEKMMELNGEVNLEGKQPRKVAIDFLK 294
>gi|317491339|ref|ZP_07949775.1| glycine betaine/proline transport system substrate-binding protein
[Enterobacteriaceae bacterium 9_2_54FAA]
gi|316920886|gb|EFV42209.1| glycine betaine/proline transport system substrate-binding protein
[Enterobacteriaceae bacterium 9_2_54FAA]
Length = 350
Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats.
Identities = 43/318 (13%), Positives = 89/318 (27%), Gaps = 36/318 (11%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLA 63
LA TTFS A V+ + + T + S L LGY K +
Sbjct: 24 LAFGTLSTTFSTQAAELPGKGVSVQPIQSSIAEETFQTQLVSKAL-TKLGYDVQPTKEVD 82
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
V + S+ W + + + GA ++
Sbjct: 83 YNVAYTSVAAGDATFLAVNWDQLHSDMYNGAGGDKKFYREGQYVTGAAQGYLIDKKTADQ 142
Query: 124 GIKSYQD---------IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
+ + + + A + G PG I + + +
Sbjct: 143 YHITNIEQLKDPKIAKLFDTNNDGKADLAGCTPGWGCEASINYQLKAYGLNDT-VEHNQG 201
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEEI------------ 218
+ A + + P + +W P+ ++ ++ +L
Sbjct: 202 NYSALIADTMTRFKEGKPVFYYTWTPYWVSDVLKPGRDVVWLQVPFSALPGSLKDVDTKL 261
Query: 219 -----SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI---LNNKQDRQ 270
GF ++ V + +K P ++L +K +A N + N++ D +
Sbjct: 262 PNGANYGFPVNNMQIVANKTFAEKNPAAAKLFAEMKLPIADVNAQNLRMHQGENSEADIE 321
Query: 271 FVGRTMLRTHPDLLKNWL 288
++ H W+
Sbjct: 322 RHVNGWIKAHQATFDGWV 339
>gi|75909169|ref|YP_323465.1| glycine betaine ABC transporter substrate-binding protein [Anabaena
variabilis ATCC 29413]
gi|75702894|gb|ABA22570.1| Substrate-binding region of ABC-type glycine betaine transport
system [Anabaena variabilis ATCC 29413]
Length = 302
Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats.
Identities = 37/300 (12%), Positives = 81/300 (27%), Gaps = 32/300 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTP----VRFADTGWTDIAATTAMTSVILEEILGYK 56
M + L L T ++ A + S + A +T+ + + +EE K
Sbjct: 1 MKRFLIFFLLSLTLVLAIASCSPSTNTTNGDIIIASKDFTEQDILGEILAQQIEETTSLK 60
Query: 57 TNIKL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP----------------YLEEG 98
+ V ++ ID ++ Y + + Y +
Sbjct: 61 VARRPRLGGSFVCHNAILAGKIDAYIEYTGTAFTGILKQPVINNPQVVYEKLKQAYSQRF 120
Query: 99 SIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
++++ + + V A +G E E +
Sbjct: 121 QLEVMPSLGFENTFAIIVRGEDARRYNIQTLTDAAQYTPQWRGGFGYE-FLEREDGFPGL 179
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ + ++ I R + + L + L +
Sbjct: 180 AKTYGL-----KFTKPPQIMDLGLIYRALIQKQVDMVAGNSTDGQIARLGLVVLKD--DQ 232
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F +VR + L K P + + + K + ++ L+ QD + V R
Sbjct: 233 QYFPPYEATPIVRQETLKKYPQLKTAIAQLTGKIAADEMRQLNYLVEGELQDIKEVAREF 292
>gi|255027645|ref|ZP_05299631.1| glycine betaine/carnitine/choline ABC transporter
(osmoprotectant-binding protein) [Listeria monocytogenes
FSL J2-003]
Length = 305
Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats.
Identities = 30/278 (10%), Positives = 73/278 (26%), Gaps = 25/278 (8%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGIDIF 79
S +R T+ + + ++E G K I + V +++ N +DI
Sbjct: 27 GSSKDTIRIGAMATTESQIVSNILKELIEHDTGLKVEIVNNLGSTIVQHQAMLNGDVDIT 86
Query: 80 MGYWY---------------PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
+ P E + G
Sbjct: 87 ATRYTGTDLVGPLGEEAIKDPEKALAAVKKGFEERFHQTWFDSYGFANTYVFMVRQDTAK 146
Query: 125 IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
+ ++ +K G++ + + + ++ ++ I
Sbjct: 147 KYNLNTVSDMRKVENELTAGVDNSWMEREGDGYKAFSKAYDIEFKKIFP----MQIGLIY 202
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
+NN V L + N+ L ++ + + L K P +
Sbjct: 203 TALKNNQMDVALGYSTDGRIPTYNLKLLKDDKKFF--PPYDASALATDEILKKHPELKTT 260
Query: 245 LKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ + K S ++ ++ V + L+ +
Sbjct: 261 INKLKGKISTEEMQKLNYEADGKLKEPSIVAQEFLQKN 298
>gi|222150724|ref|YP_002559877.1| ABC-type transporter periplasmic glycine betaine choline-binding
protein homolog [Macrococcus caseolyticus JCSC5402]
gi|222119846|dbj|BAH17181.1| ABC-type transporter periplasmic glycine betaine choline-binding
protein homolog [Macrococcus caseolyticus JCSC5402]
Length = 504
Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats.
Identities = 40/302 (13%), Positives = 89/302 (29%), Gaps = 37/302 (12%)
Query: 2 YKILAVCLFLTTFSISYARDA---DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
K+ V + + A ++FA T+ T M ++EE
Sbjct: 207 RKLTYVLGTMLLIFLLVAVGPLLFGKEEKLKFAGKLGTEPEIITNMYKYVIEEKTDVAVE 266
Query: 59 IKL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL-----------------EEGS 99
+ F +LK+ ID ++ + L + ++
Sbjct: 267 VSPGMGKTTFLFNALKSDNIDGYLEFTGTVLGEITKEDPKATTESEVYQQANESLKKKYD 326
Query: 100 IKLVAENLQGAKYMLAVND-VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ L+ Y LAV +K+ D+ K K ++ D
Sbjct: 327 MALLQPMKYNNTYALAVKKSYAEEHNLKTISDLEKVKDDVKV---------GFTLEFNDR 377
Query: 159 INNNKFSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
+ K K + + + +I + N + ++ ++ L +
Sbjct: 378 NDGYKGIQKKYNIKFNNVKTMEPKIRYQAIDQNKIDLMDAYSTDAELKKYDMVVLKD--D 435
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
F +++ ++K P + L + K + +M + N + + V +
Sbjct: 436 KHLFPPYQGAPLLKQSTIEKYPEVVDALNALSGKITDEEMQKMNYDVAYNNKTPKSVAKA 495
Query: 276 ML 277
L
Sbjct: 496 YL 497
>gi|326406394|gb|ADZ63465.1| glycine betaine ABC transporter permease/substrate-binding protein
[Lactococcus lactis subsp. lactis CV56]
Length = 500
Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats.
Identities = 33/301 (10%), Positives = 76/301 (25%), Gaps = 34/301 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCT--PVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
+ IL + + A + M +++E+ + N
Sbjct: 206 IKTILISFFIGLLVLGGSYYRPQTSNHPQITIAGKLGAEPDVLINMYKLMIEKDSNIRVN 265
Query: 59 IK--LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA------------ 104
+K + +LK ID++ + F+ + +V
Sbjct: 266 LKSNFGDTTFLYNALKAGKIDLYPEFTGTITSTFLKDPVSSTDPNVVWQKAEEGIKKLNQ 325
Query: 105 -----ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI 159
Y +AV + L A + + +
Sbjct: 326 FTYLSPMKFQDTYAIAVKSDFAKEHQLTKISDLANVSGLTAGF--DVEFANRSDGNIGLR 383
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
L + + I + + V + N+ L + +
Sbjct: 384 KLYGLDLNVKTMQNS-------LIYKALNSGAVNVAEVYSTDSQIKQYNLTVLKDDKNLF 436
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+++ L K P + ++L + K + EM + ++D V L
Sbjct: 437 --PPYQAAPLMKESLLKKYPELKKILNKLSGKITDQEMIEMNYDVNVKQEDAAKVAERYL 494
Query: 278 R 278
+
Sbjct: 495 K 495
>gi|326202341|ref|ZP_08192210.1| Substrate-binding region of ABC-type glycine betaine transport
system [Clostridium papyrosolvens DSM 2782]
gi|325987459|gb|EGD48286.1| Substrate-binding region of ABC-type glycine betaine transport
system [Clostridium papyrosolvens DSM 2782]
Length = 522
Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats.
Identities = 44/300 (14%), Positives = 96/300 (32%), Gaps = 35/300 (11%)
Query: 3 KILAVCLFLTTFSISYARD----ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
KI+ L T I ++ +R A +T+ M + ++EE
Sbjct: 227 KIVLSLAGLLTVIIIFSTIISSLGSDGKVIRIAGKDFTEQHILVNMFADLIEEKTDLNVE 286
Query: 59 IK--LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFI----------------APYLEEGSI 100
K L V F +LK+ ID++ Y + + + E+ +I
Sbjct: 287 RKVNLGGTQVCFSALKSGDIDLYFDYSGTAYGDTLKYPPISDMKKVYNTVKKDFKEKFNI 346
Query: 101 KLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYG-IEPGNEGNQRILDMI 159
++ + Y+LAV + + + I+ + G +L +
Sbjct: 347 SVLKQMGFNNTYVLAVTNETSKKY--NLKSISDMARVAPNLTVGTTLEFLNREDGLLGIT 404
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F K + ++ S N V ++ + N+ L +
Sbjct: 405 KKYNFKFKDAKGLDGSPR------YTALINKETDVVDAFSTDGLLKKFNLVSLEDDKNFF 458
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+VR + + K P I +++ + + + E+ + +++ V + L
Sbjct: 459 --PPYYAIPLVREEIIQKYPEIEPVIEELGDILTNEVMIELNYKVDELQKEPSAVAKEFL 516
>gi|15672830|ref|NP_267004.1| choline ABC transporter permease and substrate binding protein
[Lactococcus lactis subsp. lactis Il1403]
gi|12723774|gb|AAK04946.1|AE006318_9 choline ABC transporter permease and substrate binding protein
[Lactococcus lactis subsp. lactis Il1403]
Length = 500
Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats.
Identities = 33/301 (10%), Positives = 76/301 (25%), Gaps = 34/301 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCT--PVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
+ IL + + A + M +++E+ + N
Sbjct: 206 IKTILISFFIGLLVLGGSYYRPQTSNHPQITIAGKLGAEPDVLINMYKLMIEKDSNIRVN 265
Query: 59 IK--LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA------------ 104
+K + +LK ID++ + F+ + +V
Sbjct: 266 LKSNFGDTTFLYNALKAGKIDLYPEFTGTITSTFLKDPVSSTDPNVVWQKAEEGIKKLNQ 325
Query: 105 -----ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI 159
Y +AV + L A + + +
Sbjct: 326 FTYLSPMKFQDTYAIAVKSDFAKEHQLTKISDLANVSGLTAGF--DVEFANRSDGNIGLR 383
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
L + + I + + V + N+ L + +
Sbjct: 384 KLYGLDLNVKTMQNS-------LIYKALNSGAVNVAEVYSTDSQIKQYNLTVLKDDKNLF 436
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+++ L K P + ++L + K + EM + ++D V L
Sbjct: 437 --PPYQAAPLMKESLLKKYPELKKILNKLSGKITDQEMIEMNYDVNVKQEDAAKVAERYL 494
Query: 278 R 278
+
Sbjct: 495 K 495
>gi|269964154|ref|ZP_06178451.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269831109|gb|EEZ85271.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 264
Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats.
Identities = 45/258 (17%), Positives = 93/258 (36%), Gaps = 3/258 (1%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYW 83
+ ++ T + T ++ S +L + +G++ F LK+ ID+ W
Sbjct: 6 ASKTIKLGVTNLSFHRVTASLVSHLLND-MGFEVERVYSPHEENFSKLKSGEIDMLSSAW 64
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAK 141
PS +EE L + V D + D+ K + +++ +
Sbjct: 65 LPSSHGIYKASVEEVQPLLELGLHYEPYALWGVPDYVPEDLVSEVSDLTKPEVVEKMKSD 124
Query: 142 IYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPH 201
I GI PG + + M++ + G+R +E F+ + N V W+P
Sbjct: 125 IQGINPGAGITRFSIKMMDEYALTEAGYRFHTGTEEDCFTAFEKAVENKQWVVVPLWKPQ 184
Query: 202 PINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKL 261
++ I + + + G + +V + + + L ++FS + E+
Sbjct: 185 FLHYKYAIREIAEPKGLLGIVDKAVLLLRQDKSDKFTQDELNRLDALRFSNDIIAELDYK 244
Query: 262 ILNNKQDRQFVGRTMLRT 279
I ++ V R L
Sbjct: 245 ISREGRELDAVTREWLDN 262
>gi|157693793|ref|YP_001488255.1| glycine betaine/carnitine/choline ABC transporter binding protein
[Bacillus pumilus SAFR-032]
gi|157682551|gb|ABV63695.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, binding protein [Bacillus pumilus
SAFR-032]
Length = 305
Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats.
Identities = 44/297 (14%), Positives = 89/297 (29%), Gaps = 27/297 (9%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--L 61
+LA CL L + S +R +T+ M S I+E KT I L
Sbjct: 12 LLAGCLLLISGCSLPGLAGSSGNTLRVGAQNFTESEIMAYMVSDIIEHYTDKKTTIVKNL 71
Query: 62 LAVPVTFRSLKNKGIDIFMGYWY---------------PSLEKFIAPYLEEGSIKLVAEN 106
+ V ++++N IDI + P I + +
Sbjct: 72 GSNTVQQKAMENGDIDIAATRYTGTDLTSTLGMDAEKDPERAMEIVQKEFKKRYDYKWFD 131
Query: 107 LQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSL 166
G A + ++ KK +G++ + + + +
Sbjct: 132 SYGFDNTYAFAVTQKMAKENKLETVSDLKKNAKNYRFGVDNIW-----LKKKGDGYEGFV 186
Query: 167 KGFRLIEAS-ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEAS 225
K + + S + +N + L++ ++ L + F
Sbjct: 187 KTYGIEFGSTYPMQIGLVYDALKNEKMDIVLAYSTDGRIKAYDLKILKD--DKRFFPPYD 244
Query: 226 VYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
VV L + P + +++ + K E+ + Q+ V + L+ H
Sbjct: 245 ASPVVPEKVLKENPGLDKVINRLIGKIDTEQMQELNYQVDGELQEPATVAKNFLKKH 301
>gi|50122425|ref|YP_051592.1| glycine betaine transporter periplasmic subunit [Pectobacterium
atrosepticum SCRI1043]
gi|49612951|emb|CAG76402.1| glycine betaine-binding periplasmic protein precursor
[Pectobacterium atrosepticum SCRI1043]
Length = 334
Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats.
Identities = 42/325 (12%), Positives = 88/325 (27%), Gaps = 40/325 (12%)
Query: 3 KILAVCLFLTTFS----ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
K+ A L S + V + ++ T + S LE LGY
Sbjct: 5 KLWAAALTTALLSTQVYAADTAQPGKGISVIPVQSTISEETFQTLLVSRALE-KLGYDVQ 63
Query: 59 I-KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+ + V + S+ + W P + E + GA ++
Sbjct: 64 TPREVDYNVAYTSIASGDATFIAVNWDPLHADQYKAAGGDAKFYRQGEYVSGAAQGYLID 123
Query: 118 DVGFALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
+ I + A + G PG I + +
Sbjct: 124 KKTAEKYKITNIAQLKDPKIAKIFDTNGDGKADLTGCTPGWGCEAAINHHLPAYGLT-NT 182
Query: 169 FRLIEASELASFSQIRRDQRNNIPAVFLSWEP----HPINSDLNIHYLPGGEE------- 217
+ + A + + P ++ +W P + ++ +L
Sbjct: 183 VEHNQGNYAAMIADTITRYKEGKPILYYTWTPYWVSDVLVPGRDVVWLQVPFSSQPGEMK 242
Query: 218 ----------ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNN-- 265
GF ++ + +K P ++L +K +A N +
Sbjct: 243 DISTKLPNGADYGFPVNTMKIAANKAWAEKNPAAAKLFAIMKLPIADVNAQNLRMHEGQG 302
Query: 266 -KQDRQFVGRTMLRTHPDLLKNWLI 289
++D + ++ H L W+
Sbjct: 303 SQKDIERHVDGWIKAHQQLFDGWVK 327
>gi|238790132|ref|ZP_04633909.1| Osmoprotectant transport protein OusBX [Yersinia frederiksenii ATCC
33641]
gi|238721801|gb|EEQ13464.1| Osmoprotectant transport protein OusBX [Yersinia frederiksenii ATCC
33641]
Length = 334
Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats.
Identities = 40/320 (12%), Positives = 91/320 (28%), Gaps = 35/320 (10%)
Query: 3 KILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IK 60
++ A+ L + A + V + ++ T++ + LE LGY K
Sbjct: 5 RVWALALTTLISTQLSAAELPGKGITVLPLQSTISEETFQTSLVNKALE-KLGYDVQPTK 63
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ V + S+ W P A + ++G ++
Sbjct: 64 EVDYNVAYSSIAAGDATFLAVNWVPLHNDQYAAAGGDAKFYRQGNFIEGLAQGYLIDKKT 123
Query: 121 FALGIKSYQD---------IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
+ + + + A + G PG I I S
Sbjct: 124 ADKYHITNIEQLKDPKIAKLFDANNDGKADLTGCNPGWGCEAPINHQIQAYGLSDT-VTH 182
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEP----HPINSDLNIHYLPGGEE---------- 217
+ + A + + P ++ +W P + ++ +L
Sbjct: 183 NQGNYAAMIADTITRYKEGKPILYYTWTPYWVSDVLVPGRDVVWLQVPFSSLPDKTIDTQ 242
Query: 218 -----ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI---LNNKQDR 269
GF + ++ V + + P ++L +K S+ N + ++ D
Sbjct: 243 LSNGANYGFPPSVMHIVANKKWAEANPAAAKLFSIMKLSINDVNAQNMRMHAGESSDADI 302
Query: 270 QFVGRTMLRTHPDLLKNWLI 289
+ ++ H W+
Sbjct: 303 ERHVNGWIQAHQATFDGWVK 322
>gi|226309965|ref|YP_002769859.1| glycine betaine ABC transporter substrate binding protein precursor
[Brevibacillus brevis NBRC 100599]
gi|226092913|dbj|BAH41355.1| probable glycine betaine ABC transporter substrate binding protein
precursor [Brevibacillus brevis NBRC 100599]
Length = 310
Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats.
Identities = 31/180 (17%), Positives = 69/180 (38%), Gaps = 4/180 (2%)
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
+ I S ++L KI GI+ G + +++N ++L+E S
Sbjct: 31 IPTATVVGPIASETSDNALGEKLDYKIIGIDAGAGSMVKTEEVMNLYGLDK--WQLVEGS 88
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYL 235
+ A + + + P + W PH + +++ YL + G G ++T+VR
Sbjct: 89 DAAMTAALIKAYEAKEPIIITGWTPHWMFKKMDLKYLEDPKNGFG-GAEQIHTIVRKGLK 147
Query: 236 DKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFD 295
+ P + L + A +M + + +D + ++ + + W+ G+
Sbjct: 148 EDQPAAYQFLDKFWWEPADMESVMVQM-IDGKDPEVAAAEWVKNNEAKVAKWVEGIQPVQ 206
Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 1/109 (0%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFM 80
+ A W A++ + +LE+ LGY+ + + + + +D +
Sbjct: 203 QPVQKEKLTLAYVAWDSEIASSHVVEHVLEQKLGYEVELSQVQTGPMWAGVAIGDVDGMV 262
Query: 81 GYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQ 129
W PS + G I+ + NL G K L V I+ +Q
Sbjct: 263 AAWLPSTDTSYLKK-FGGQIEDLGPNLDGTKIGLVVPSYMNISSIEDFQ 310
>gi|167757644|ref|ZP_02429771.1| hypothetical protein CLORAM_03194 [Clostridium ramosum DSM 1402]
gi|167702641|gb|EDS17220.1| hypothetical protein CLORAM_03194 [Clostridium ramosum DSM 1402]
Length = 523
Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats.
Identities = 32/298 (10%), Positives = 91/298 (30%), Gaps = 30/298 (10%)
Query: 4 ILAVCLFLTTFSISYARDADSCT-PVRFADTGWTDIAATTAMTSVILEEILGYKTN--IK 60
I+A C+ L + S + +++ M ++E+ + N +
Sbjct: 231 IIATCICLAGSFVYTNLGKTSDKITINIGSMDFSEQEILNYMLKYLIEKNTDVEVNQSLS 290
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFI----------------APYLEEGSIKLVA 104
L + + ++K +D+++ Y + ++ + ++
Sbjct: 291 LGSSSIVLDAMKTGDVDMYVDYTGTIYGSVLGLEPNSDVEAVYNTVKDEMKKQYNFTVLE 350
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKF 164
Y LA++ + + I+ K I+ ++ + +
Sbjct: 351 PLGFNNTYTLAMSKQTADKY--NIETISDLCKVSNQLIFS-PTLTFVERKDCLVGLQETY 407
Query: 165 SLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEA 224
L+ +I NN + ++ + ++ L +
Sbjct: 408 PLQFKEVIPIDGSPR----YTALVNNECDLVDAFSTDGLLKKFDLKVLTDDKNFFL--PY 461
Query: 225 SVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ ++ D+CP I L+ ++ + + ++ + KQ + V L +
Sbjct: 462 NAIPIINQRIKDECPEIIELVNQLQNYLNEEVMVDLNYKVDEEKQKTKDVAYNFLLEN 519
>gi|258404896|ref|YP_003197638.1| Substrate-binding region of ABC-type glycine betaine transport
system [Desulfohalobium retbaense DSM 5692]
gi|257797123|gb|ACV68060.1| Substrate-binding region of ABC-type glycine betaine transport
system [Desulfohalobium retbaense DSM 5692]
Length = 303
Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats.
Identities = 40/298 (13%), Positives = 92/298 (30%), Gaps = 31/298 (10%)
Query: 7 VCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL-AVP 65
+ L L+ + + +P+ +T+ ++LE+ G + K
Sbjct: 9 LTLVLSALVLMAGSTTLNASPLIVGGKNYTEQYILAECAQILLEDA-GIEAKTKTGVGSA 67
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFI------------------APYLEEGSIKLVAENL 107
+ +SL N D++ Y + + + + ++ +
Sbjct: 68 LARKSLVNAQFDLYFEYTGTAYTVYYEQDDQAVMTHPDKVYEWVKSHDADKNLVWLDPIQ 127
Query: 108 QGAKYMLAVNDVGFAL-GIKSYQDIAKYKKELGAK--IYGIEPGNEGNQRILDMINNNKF 164
Y L + + GI S D Y + + E ++ F
Sbjct: 128 FNNTYTLMMREKQADALGITSISDFGAYVDDNPDELLFATDVEFWERPDGFKALMRTYDF 187
Query: 165 SLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEA 224
+ ++ + S + R V + + + L + F
Sbjct: 188 RMPIDQIKKMS----TGLTYKALREGQADVAMGFSTDGRIAAFGFVLLED--DKQFFPVY 241
Query: 225 SVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ VVR D L++ P I +LK + K ++ K + + ++ + V L+ +
Sbjct: 242 NPAPVVRKDVLEQYPEIRDILKPLAQKLDTNQMQQLNKAVDVDHKELKAVATQWLQDN 299
>gi|254229371|ref|ZP_04922787.1| Periplasmic glycine betaine/choline-binding [Vibrio sp. Ex25]
gi|262396827|ref|YP_003288680.1| putative ABC transporter periplasmic binding protein [Vibrio sp.
Ex25]
gi|151938062|gb|EDN56904.1| Periplasmic glycine betaine/choline-binding [Vibrio sp. Ex25]
gi|262340421|gb|ACY54215.1| putative ABC transporter periplasmic binding protein [Vibrio sp.
Ex25]
Length = 293
Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats.
Identities = 39/300 (13%), Positives = 88/300 (29%), Gaps = 31/300 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+ +I L + S+ A+ + +T+ T +TS L + GY + +
Sbjct: 2 LKQITRRLLAVGVLLSSFHASAE----IVVGGKNFTEQQLLTEITSQYLTKK-GYDVDKR 56
Query: 61 LL-AVPVTFRSLKNKGIDIFMGYWYPSLEKF---------------IAPYLEEGSIKLVA 104
V ++ +N ID++ Y SL + + + + +
Sbjct: 57 SGMGSAVLRKAQENGQIDLYWEYTGTSLIIYNKVKDKLPAEQVYQRVKELDAKKGLVWLN 116
Query: 105 ENLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKKELGAKIYGIEPGNEGN-QRILDMINNN 162
+ Y LA+ GI + D A+ ++ + +
Sbjct: 117 TSKANNTYALAMRSDDAKQRGISTLSDFAEQMRQDPPMTIALNAEFYARKDGFRPLQKTY 176
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
KF ++ + L + L + F
Sbjct: 177 KFKASRDQVKRMD----TGLTYDALKGKEVDAALVFATDGRIKAFGFTVLTD--DKQFFP 230
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ ++ VVR + LD P ++ + + + + + + ++ V L H
Sbjct: 231 DYAITPVVRQETLDANPELAEQMNALSAAIDGDTMSTLNQQVDVERRSISEVASQFLSEH 290
>gi|2271391|gb|AAB63770.1| osmoprotectant binding protein precursor [Bacillus subtilis subsp.
subtilis str. JH642]
Length = 305
Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats.
Identities = 32/306 (10%), Positives = 77/306 (25%), Gaps = 33/306 (10%)
Query: 1 MYKI--LAVCLFLTTFSISYARDA----DSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
M KI L + + S ++ T+ M + ++E
Sbjct: 3 MTKIKWLGAFALVFVMLLGGCSLPGLGGASDDTIKIGAQSMTESEIVANMIAHVIEHDTD 62
Query: 55 YKTNIKL--LAVPVTFRSLKNKGIDIFMGYW---------------YPSLEKFIAPYLEE 97
T + + V +++ IDI + P I +
Sbjct: 63 LNTALVKNLGSNYVQHQAMLGGDIDISATRYSGTDLTSTLGKEAEKDPKKALNIVQNEFQ 122
Query: 98 GSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILD 157
+ G A + ++ KK G++ +
Sbjct: 123 KRFSYKWFDSYGFDNTYAFTVTKKFAEKEHINTVSDLKKNASQYKLGVDNAWLKRKG--- 179
Query: 158 MINNNKFSLKGFRLIEAS-ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ K + + + + +N L++ ++ L
Sbjct: 180 --DGYKGFVSTYGFEFGTTYPMQIGLVYDAVKNGKMDAVLAYSTDGRIKAYDLKILKD-- 235
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F V+ L + P + ++ + + E+ + ++ V +
Sbjct: 236 DKRFFPPYDCSPVIPEKVLKEHPELEGVINKLIGQIDTETMQELNYEVDGKLKEPSVVAK 295
Query: 275 TMLRTH 280
L H
Sbjct: 296 EFLEKH 301
>gi|307297588|ref|ZP_07577394.1| Substrate-binding region of ABC-type glycine betaine transport
system [Thermotogales bacterium mesG1.Ag.4.2]
gi|306916848|gb|EFN47230.1| Substrate-binding region of ABC-type glycine betaine transport
system [Thermotogales bacterium mesG1.Ag.4.2]
Length = 294
Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats.
Identities = 46/299 (15%), Positives = 98/299 (32%), Gaps = 32/299 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M ++ + L + ++ T + +T+ ++M S +LE+ G++
Sbjct: 1 MKRLFLITLVVLMATVMSFGQ----TRLNVGAKNFTEQYIVSSMISQLLEDA-GFRVTEN 55
Query: 61 LL-AVPVTFRSLKNKGIDIFMGYWYPSLEKFI----------------APYLEEGSIKLV 103
+ V +L+ ID++ Y + ++ E I +
Sbjct: 56 FGMSSFVARSALETGQIDLYADYTGTAWPTYLGHEKMIRDPHELYEAVKAEDLENGIVWL 115
Query: 104 AENLQGAKYMLAV-NDVGFALGIKSYQDIAKYKKELGAKIYGI-EPGNEGNQRILDMINN 161
Y LAV D G+ + +D+A+ E ++GI E + M
Sbjct: 116 DMANFNNTYALAVRRDFAAEHGLTTLEDLAELTHEDPDLLFGIVYEFLERDDGFWPMSEA 175
Query: 162 NKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
F+++ ++ N V + + N+ L S F
Sbjct: 176 YGFAVEKRQVK----TMEIGLTYEALDKNQIDVAMVFSTDGKLEKYNLLVLEDT--KSFF 229
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLR 278
++ VR + L+ P I +L+ I + + + L+ + V L+
Sbjct: 230 PSYNLAVTVRKEILENNPEIEEILRPISVYLTEPIMTRLNYLVDAAGYEPDEVAEGFLK 288
>gi|294506325|ref|YP_003570383.1| glycine betaine ABC transporter glycine betaine-binding protein
[Salinibacter ruber M8]
gi|294342653|emb|CBH23431.1| glycine betaine ABC transporter glycine betaine-binding protein
[Salinibacter ruber M8]
Length = 331
Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats.
Identities = 54/286 (18%), Positives = 104/286 (36%), Gaps = 11/286 (3%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-LAVPVTFRSLKNKGIDIF 79
D + W + A T + I+E + +++ + F S+ D F
Sbjct: 35 SQDVSRKMNMVTVNWIEGMAFTYVQEQIMENQYDMEVDVREVGGGGIAFSSVAEGDRDYF 94
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
W P+ + +G+ + +G L V + I S ++ Y+ ELG
Sbjct: 95 NEAWLPTTHQDPWSK-AQGNAAKLGYTYKGTSVGLTVPAY---MDISSVSELENYRNELG 150
Query: 140 AKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWE 199
+I GIE G N + ++ NN + + ++ +S A++ + N P V W
Sbjct: 151 GEINGIESGAAVNDQTRKILENNGLNDEF-SVVASSGPATWQALENAVNNEQPIVVTGWY 209
Query: 200 PHPINSDLNIHYLPG---GEEISGFGEASVYTVVRSDYLDKCP-NISRLLKNIKFSVALE 255
PH ++ YL G G+ V+ +V S++ ++ P + LK + +
Sbjct: 210 PHWKWGSFDLKYLEGAQTGQSPVFGDPEDVFKIVDSEFTEEFPKEVVCFLKVSEVTDEEI 269
Query: 256 NEMMKLILNNK-QDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPS 300
+M N ++ + H + + W D S
Sbjct: 270 ESLMGSFRNRGDMSKREAASQWIENHSEDVNAWTKQAEECAASDGS 315
>gi|30064046|ref|NP_838217.1| glycine betaine transporter periplasmic subunit [Shigella flexneri
2a str. 2457T]
gi|56480161|ref|NP_708493.2| glycine betaine transporter periplasmic subunit [Shigella flexneri
2a str. 301]
gi|157158535|ref|YP_001463989.1| glycine betaine transporter periplasmic subunit [Escherichia coli
E24377A]
gi|187733067|ref|YP_001881569.1| glycine betaine transporter periplasmic subunit [Shigella boydii
CDC 3083-94]
gi|193071025|ref|ZP_03051953.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Escherichia coli E110019]
gi|209920123|ref|YP_002294207.1| glycine betaine transporter periplasmic subunit [Escherichia coli
SE11]
gi|218555227|ref|YP_002388140.1| glycine betaine transporter periplasmic subunit [Escherichia coli
IAI1]
gi|256019539|ref|ZP_05433404.1| glycine betaine transporter periplasmic subunit [Shigella sp. D9]
gi|293448997|ref|ZP_06663418.1| glycine betaine-binding periplasmic protein [Escherichia coli B088]
gi|300815918|ref|ZP_07096142.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 107-1]
gi|300916827|ref|ZP_07133531.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 115-1]
gi|331669417|ref|ZP_08370263.1| glycine betaine-binding periplasmic protein [Escherichia coli
TA271]
gi|331678657|ref|ZP_08379331.1| glycine betaine-binding periplasmic protein [Escherichia coli H591]
gi|332280663|ref|ZP_08393076.1| glycine betaine/L-proline transport system permease [Shigella sp.
D9]
gi|30042302|gb|AAP18027.1| glycine betaine/L-proline transport system permease protein
[Shigella flexneri 2a str. 2457T]
gi|56383712|gb|AAN44200.2| glycine betaine/L-proline transport system permease protein
[Shigella flexneri 2a str. 301]
gi|157080565|gb|ABV20273.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Escherichia coli E24377A]
gi|187430059|gb|ACD09333.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Shigella boydii CDC 3083-94]
gi|192955683|gb|EDV86158.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Escherichia coli E110019]
gi|209913382|dbj|BAG78456.1| glycine/betaine/proline ABC transporter substrate binding component
[Escherichia coli SE11]
gi|218361995|emb|CAQ99601.1| glycine betaine transporter subunit ; periplasmic-binding component
of ABC superfamily [Escherichia coli IAI1]
gi|281602055|gb|ADA75039.1| Glycine betaine/L-proline transport system permease protein
[Shigella flexneri 2002017]
gi|291322087|gb|EFE61516.1| glycine betaine-binding periplasmic protein [Escherichia coli B088]
gi|300415893|gb|EFJ99203.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 115-1]
gi|300531847|gb|EFK52909.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 107-1]
gi|313648329|gb|EFS12773.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Shigella flexneri 2a str. 2457T]
gi|320173465|gb|EFW48664.1| ProX protein [Shigella dysenteriae CDC 74-1112]
gi|323173038|gb|EFZ58669.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Escherichia coli LT-68]
gi|323183205|gb|EFZ68602.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Escherichia coli 1357]
gi|323946349|gb|EGB42378.1| proX protein [Escherichia coli H120]
gi|324020308|gb|EGB89527.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 117-3]
gi|331063085|gb|EGI34998.1| glycine betaine-binding periplasmic protein [Escherichia coli
TA271]
gi|331073487|gb|EGI44808.1| glycine betaine-binding periplasmic protein [Escherichia coli H591]
gi|332103015|gb|EGJ06361.1| glycine betaine/L-proline transport system permease [Shigella sp.
D9]
gi|332753397|gb|EGJ83777.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Shigella flexneri 4343-70]
gi|332753904|gb|EGJ84279.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Shigella flexneri K-671]
gi|332755594|gb|EGJ85957.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Shigella flexneri 2747-71]
gi|332765629|gb|EGJ95842.1| proX [Shigella flexneri 2930-71]
gi|332999416|gb|EGK19001.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Shigella flexneri VA-6]
gi|333000679|gb|EGK20256.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Shigella flexneri K-218]
gi|333015838|gb|EGK35174.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Shigella flexneri K-304]
Length = 330
Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats.
Identities = 41/320 (12%), Positives = 94/320 (29%), Gaps = 36/320 (11%)
Query: 4 ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKL 61
+ A + ++A D V + T+ T + S LE LGY
Sbjct: 6 LFATAFATLISTQTFAADLPGKGITVNPVQSTITEETFQTLLVSRALE-KLGYTVNKPSE 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V + SL + W P + + + GA ++
Sbjct: 65 VDYNVGYTSLASGDATFTAVNWTPLHDNMYEAAGGDKKFYREGVFVNGAAQGYLIDKKTA 124
Query: 122 ALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ + + A + G PG I + + +
Sbjct: 125 DQYKITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGWGCEGAINHQLAAYELT-NTVTHN 183
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEEI---------- 218
+ + A + + P + +W P+ ++++ ++ +L
Sbjct: 184 QGNYAAMMADTISRYKEGKPVFYYTWTPYWVSNELKPGKDVVWLQVPFSALPGDKNADTK 243
Query: 219 ------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
GF ++++ V + +K P ++L ++ VA N ++ + K +
Sbjct: 244 LPNGANYGFPVSTMHIVANKAWTEKNPAAAKLFAIMQLPVADINAQNAIMHDGKASEGDI 303
Query: 273 ---GRTMLRTHPDLLKNWLI 289
++ H W+
Sbjct: 304 QGHVDGWIKAHQQQFDGWVN 323
>gi|57866202|ref|YP_187842.1| ABC transporter substrate-binding protein [Staphylococcus
epidermidis RP62A]
gi|242241937|ref|ZP_04796382.1| ABC superfamily ATP binding cassette transporter, permease protein
[Staphylococcus epidermidis W23144]
gi|251810020|ref|ZP_04824493.1| ABC superfamily ATP binding cassette transporter, permease protein
[Staphylococcus epidermidis BCM-HMP0060]
gi|282874944|ref|ZP_06283819.1| ABC transporter, substrate-binding protein, QAT family
[Staphylococcus epidermidis SK135]
gi|293368051|ref|ZP_06614683.1| conserved hypothetical protein [Staphylococcus epidermidis
M23864:W2(grey)]
gi|57636860|gb|AAW53648.1| ABC transporter, substrate-binding protein, putative
[Staphylococcus epidermidis RP62A]
gi|242234612|gb|EES36924.1| ABC superfamily ATP binding cassette transporter, permease protein
[Staphylococcus epidermidis W23144]
gi|251806471|gb|EES59128.1| ABC superfamily ATP binding cassette transporter, permease protein
[Staphylococcus epidermidis BCM-HMP0060]
gi|281296272|gb|EFA88791.1| ABC transporter, substrate-binding protein, QAT family
[Staphylococcus epidermidis SK135]
gi|291317741|gb|EFE58155.1| conserved hypothetical protein [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329737823|gb|EGG74058.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Staphylococcus epidermidis
VCU045]
Length = 314
Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats.
Identities = 44/273 (16%), Positives = 106/273 (38%), Gaps = 7/273 (2%)
Query: 26 TPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA-VPVTFRSLKNKGIDIFMGYWY 84
+ + + + + + +L++ GY + + ++ +
Sbjct: 45 KEIEISYIASDNSTPRSLVIAEVLKKA-GYDVTTTPVTASGPLYAAVSENSDSFHASGIF 103
Query: 85 PSLEK-FIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIY 143
P+ +K + + + +I + AK LAV + S + + K + I
Sbjct: 104 PTTDKSYYDKFKSKLTIYDDKHLIDNAKVGLAVPKYVQDVDSISDLKNSDFGKSVDWAIQ 163
Query: 144 GIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPI 203
G + N Q D ++++ + L E+S+ F +I+ + P VF + EP
Sbjct: 164 GTDARNGVMQETKDELDSDNLDK--YSLKESSDQDQFKKIQSAFKQQEPIVFTAMEPSWF 221
Query: 204 NSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKL 261
+ +L++ L + I G + V D+ + P + + +S + E+++ K
Sbjct: 222 SKELDVKMLKDPDNIYGNNNQHIDLVFNKDFKEAHPAAYTVATRMADDWSKSDEDKLAKK 281
Query: 262 ILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTF 294
I + ++ + V + + + + + WL G+ T
Sbjct: 282 IFVDNKNPEQVAKDYVDDNDNKVDEWLEGIETI 314
>gi|323167146|gb|EFZ52864.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Shigella sonnei 53G]
Length = 330
Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats.
Identities = 41/320 (12%), Positives = 94/320 (29%), Gaps = 36/320 (11%)
Query: 4 ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKL 61
+ A + ++A D V + T+ T + S LE LGY
Sbjct: 6 LFATAFATLISTQTFAADLPGKGITVNPVQSTITEETFQTLLVSRALE-KLGYTVNKPSE 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V + SL + W P + + + GA ++
Sbjct: 65 VDYNVGYTSLASGDATFTAVNWTPLHDNMYEAAGGDKKFYCEGVFVNGAAQGYLIDKKTA 124
Query: 122 ALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ + + A + G PG I + + +
Sbjct: 125 DQYKITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGWGCEGAINHQLAAYELT-NTVTHN 183
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEEI---------- 218
+ + A + + P + +W P+ ++++ ++ +L
Sbjct: 184 QGNYAAMMADTISRYKEGKPVFYYTWTPYWVSNELKPGKDVVWLQVPFSALPGDKNADTK 243
Query: 219 ------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
GF ++++ V + +K P ++L ++ VA N ++ + K +
Sbjct: 244 LPNGANYGFPVSTMHIVANKAWAEKNPAAAKLFAIMQLPVADINAQNAIMHDGKASEGDI 303
Query: 273 ---GRTMLRTHPDLLKNWLI 289
++ H W+
Sbjct: 304 QGHVDGWIKAHQQQFDGWVN 323
>gi|253689684|ref|YP_003018874.1| Substrate-binding region of ABC-type glycine betaine transport
system [Pectobacterium carotovorum subsp. carotovorum
PC1]
gi|251756262|gb|ACT14338.1| Substrate-binding region of ABC-type glycine betaine transport
system [Pectobacterium carotovorum subsp. carotovorum
PC1]
Length = 335
Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats.
Identities = 41/319 (12%), Positives = 88/319 (27%), Gaps = 36/319 (11%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI-KLLA 63
L L T + V + ++ T + S LE LGY + +
Sbjct: 12 LTTTLLSTQVYAADTAQPGKGISVIPVQSTISEETFQTLLVSRALE-KLGYDVQPPREVD 70
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
V + S+ + W P + E + GA ++
Sbjct: 71 YNVAYTSIASGDATFIAVNWDPLHADQYKAAGGDAKFYRQGEYVSGAAQGYLIDKKTAEK 130
Query: 124 GIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
+ + + A + G PG I + + +
Sbjct: 131 YKITNIAQLKDPKIAKLFDTNGDGKADLTGCTPGWGCEAAINHHLPAYGLT-NTVEHNQG 189
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHP----INSDLNIHYLPGGEE------------- 217
+ A + + P ++ +W P+ + ++ +L
Sbjct: 190 NYAAMIADTITRYKEGKPILYYTWTPYWVSDVLVPGRDVVWLQVPFSSQPGEMKGVSTKL 249
Query: 218 ----ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNN---KQDRQ 270
GF ++ ++ +K P ++L +K +A N + +QD +
Sbjct: 250 PNGADYGFPVNNMRIAANKEWAEKNPAAAKLFAIMKLPIADVNAQNLRMHEGQGSQQDIE 309
Query: 271 FVGRTMLRTHPDLLKNWLI 289
++ H L W+
Sbjct: 310 RHVDGWIKAHQQLFDGWVK 328
>gi|170023359|ref|YP_001719864.1| glycine betaine transporter periplasmic subunit [Yersinia
pseudotuberculosis YPIII]
gi|169749893|gb|ACA67411.1| Substrate-binding region of ABC-type glycine betaine transport
system [Yersinia pseudotuberculosis YPIII]
Length = 334
Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats.
Identities = 43/324 (13%), Positives = 90/324 (27%), Gaps = 37/324 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCT---PVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M L LTT S A+ V+ + ++ T++ + LE LGY
Sbjct: 1 MRTTGIWALALTTLISSQLSAAELSGKGITVQPLQSTISEETFQTSLVNKALE-KLGYDV 59
Query: 58 N-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
K + V + S+ W P + ++G +
Sbjct: 60 QPTKEVDYNVAYSSIAAGDATYLAVNWVPLHNDQYNAAGGDAKFYRQGNYIEGLAQGYLI 119
Query: 117 NDVGFALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
+ + + + A + G PG I I S
Sbjct: 120 DKKTAYQYNITNIAQLKDPKIAKLFDANNDGKADLTGCNPGWGCEAPINHQIKAYGLSDT 179
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP----INSDLNIHYLPGGEE------ 217
+ + A + + P ++ +W P+ + ++ +L
Sbjct: 180 -VTHNQGNYAAMIADTITRYKEGKPILYYTWTPYWVSDVLVPGRDVVWLQVPFSSLPDKT 238
Query: 218 ---------ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI---LNN 265
GF + ++ V + + P ++L +K S+ N + ++
Sbjct: 239 IDTQLSNGANYGFPPSVMHIVANKKWAEANPAAAKLFSIMKLSINDVNAQNMRMHSGESS 298
Query: 266 KQDRQFVGRTMLRTHPDLLKNWLI 289
D + + H W+
Sbjct: 299 DADIERHVNGWINAHQATFDGWVK 322
>gi|82545239|ref|YP_409186.1| glycine betaine transporter periplasmic subunit [Shigella boydii
Sb227]
gi|81246650|gb|ABB67358.1| ProX [Shigella boydii Sb227]
gi|320186470|gb|EFW61198.1| L-proline glycine betaine binding ABC transporter protein ProX
[Shigella flexneri CDC 796-83]
gi|332091826|gb|EGI96904.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Shigella boydii 3594-74]
Length = 330
Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats.
Identities = 40/320 (12%), Positives = 93/320 (29%), Gaps = 36/320 (11%)
Query: 4 ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKL 61
+ A + ++A D V + T+ T + S LE LGY
Sbjct: 6 LFATAFATLISTQTFAADLPGKGITVNPVQSTITEETFQTLLVSRALE-KLGYTVNKPSE 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V + L + W P + + + GA ++
Sbjct: 65 VDYNVGYTLLASGDATFTAVNWTPLHDNMYEAAGGDKKFYREGVFVNGAAQGYLIDKKTA 124
Query: 122 ALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ + + A + G PG I + + +
Sbjct: 125 DQYKITNIAQLKEPKIAKLFDTNGDGKADLTGCNPGWGCEGAINHQLAAYELT-NTVTHN 183
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEEI---------- 218
+ + A + + P + +W P+ ++++ ++ +L
Sbjct: 184 QGNYAAMMADTISRYKEGKPVFYYTWTPYWVSNELKPGKDVVWLQVPFSALPGDKNADTK 243
Query: 219 ------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
GF ++++ V + +K P ++L ++ VA N ++ + K +
Sbjct: 244 LPNGANYGFPVSTMHIVANKAWTEKNPAAAKLFAIMQLPVADINAQNAIMHDGKASEGDI 303
Query: 273 ---GRTMLRTHPDLLKNWLI 289
++ H W+
Sbjct: 304 QGHVDGWIKAHQQQFDGWVN 323
>gi|332709724|ref|ZP_08429683.1| ABC-type proline/glycine betaine transport system, periplasmic
component [Lyngbya majuscula 3L]
gi|332351551|gb|EGJ31132.1| ABC-type proline/glycine betaine transport system, periplasmic
component [Lyngbya majuscula 3L]
Length = 346
Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats.
Identities = 49/333 (14%), Positives = 101/333 (30%), Gaps = 44/333 (13%)
Query: 4 ILAVCLFLTTFSI------SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
ILA L L+ + A V A + T + + ++ LE +GYK
Sbjct: 13 ILAAALCLSLIACEAQTPNGSQSTAGKGVKVSSASSVSTYALFVSEIINIGLE-KVGYKP 71
Query: 58 N-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
IK L++P+ S++N +D + +W +KF + ++ V + +
Sbjct: 72 AAIKQLSIPLAHISVRNGDVDFYSVHWQNIHKKFFLENGGDQKLEKVGVIIADGLQSYQI 131
Query: 117 NDVGFALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
+ + + + A + G PG I ++ K
Sbjct: 132 DKKTAEQYKITNFGQLKDPKIAKLFDSDGDGKANLTGCNPGWGCELVIEHQLDAYKLRDT 191
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNI------------------ 209
+ + + + P +F S+ PH + L
Sbjct: 192 -VEHDQGNYDVLLAATLGRYKQGQPILFYSYSPHWSVTVLKPGEDTIRLEVPFISLPKEQ 250
Query: 210 -----HYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILN 264
+ GF V + +L P RL + + + N KL+ +
Sbjct: 251 ENITEKDTTINGKNVGFAVDKVRVMANKKFLAANPAAKRLFELMTVPIDDVNAQQKLVQD 310
Query: 265 NKQDRQFV---GRTMLRTHPDLLKNWLIGVTTF 294
+ + + ++ + L +W+
Sbjct: 311 GESSPKDIRRHAEEWIKKNQQLFDSWVESAKKA 343
>gi|191167075|ref|ZP_03028896.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Escherichia coli B7A]
gi|190902857|gb|EDV62585.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Escherichia coli B7A]
Length = 330
Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats.
Identities = 41/320 (12%), Positives = 94/320 (29%), Gaps = 36/320 (11%)
Query: 4 ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKL 61
+ A + ++A D V + T+ T + S LE LGY
Sbjct: 6 LFATAFATLISTQTFAADLPGKGITVNPVQSTITEETFQTLLVSRALE-KLGYTVNKPSE 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V + SL + W P + + + GA ++
Sbjct: 65 VDYNVGYTSLASGDATFTAVNWTPLHDNMYEAAGGDKKFYREGVFVNGAAQGYLIDKKTA 124
Query: 122 ALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ + + A + G PG I + + +
Sbjct: 125 DQYKITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGWGCEGAINHQLAAYELT-HTVTHN 183
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEEI---------- 218
+ + A + + P + +W P+ ++++ ++ +L
Sbjct: 184 QGNYAAMMADTISRYKEGKPVFYYTWTPYWVSNELKPGKDVVWLQVPFSALPGDKNADTK 243
Query: 219 ------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
GF ++++ V + +K P ++L ++ VA N ++ + K +
Sbjct: 244 LPNGANYGFPVSTMHIVANKAWAEKNPAAAKLFAIMQLPVADINAQNAIMHDGKASEGDI 303
Query: 273 ---GRTMLRTHPDLLKNWLI 289
++ H W+
Sbjct: 304 QGHVDGWIKVHQQQFDGWVN 323
>gi|295397201|ref|ZP_06807303.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, membrane protein [Aerococcus viridans ATCC
11563]
gi|294974561|gb|EFG50286.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, membrane protein [Aerococcus viridans ATCC
11563]
Length = 529
Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats.
Identities = 40/307 (13%), Positives = 74/307 (24%), Gaps = 40/307 (13%)
Query: 1 MYKILAVCLFLTTFSISYARDA---DSCTPVRFADTGWTDIAATTAMTSVILE---EILG 54
M IL L L T V A ++ M I+E + +
Sbjct: 223 MKTILISLLVLFVGIGGPILAQRLTGQVTNVTIAGKLGSEPEILINMYKEIIEADNDDVN 282
Query: 55 YKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL------------------- 95
F +L N IDI+ + LE +
Sbjct: 283 VDVKGNFGKTSFLFSALDNNEIDIYPEFSGTVLESLVDVDEATDTSDFDQADTYQLARDL 342
Query: 96 --EEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQ 153
E+ + + Y LAV + E
Sbjct: 343 LKEQYDMTFLEPFSFENTYALAVKRDFAEDN--------DLETISDLAKVEDEITAGFTL 394
Query: 154 RILDMINNNKFSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYL 212
+D + + + L S + + NN V ++ + ++ L
Sbjct: 395 EFIDRQDGYVGIQELYGLTFPSVKSLEPALRYNAINNNEVNVIDAYSTDSQILEYDLITL 454
Query: 213 PGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQ 270
+ ++ D+ + P I L + + +M + Q+
Sbjct: 455 EDDLGLF--PNYQGGPLMNVDFAEDHPEIVASLNKLSGLVTEDEMIQMNYAVNVEGQEPS 512
Query: 271 FVGRTML 277
V L
Sbjct: 513 QVAHDFL 519
>gi|169827830|ref|YP_001697988.1| glycine betaine/carnitine/choline-binding protein [Lysinibacillus
sphaericus C3-41]
gi|168992318|gb|ACA39858.1| Glycine betaine/carnitine/choline-binding protein precursor
(Osmoprotectant-binding protein) [Lysinibacillus
sphaericus C3-41]
Length = 499
Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats.
Identities = 32/304 (10%), Positives = 85/304 (27%), Gaps = 36/304 (11%)
Query: 2 YKILAVCLFLTTFSISYARDA----DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
K + ++ + + A + M +++E+
Sbjct: 201 RKTVIAVSLVSMVAWMMVFMPLLNGKDQDEIVIAGKLGAEPEILINMYKLLIEQDTDLTV 260
Query: 58 NIKL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP-----------------YLEEG 98
+K F +LK+ IDI+ + ++ +F+ L++
Sbjct: 261 QLKPGLGKTSFVFNALKSGSIDIYPEFTGTAISEFLKQEAINNNEADVYRQAKDGMLKQF 320
Query: 99 SIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ +++ Y LAV++ K ++ D
Sbjct: 321 DMVMLSPMNYNNTYALAVSEDLAERYQLQTISDLKSIEQAVK--------AGFTLEFNDR 372
Query: 159 INNNKFSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
+ K + + S ++ + + + ++ + L +
Sbjct: 373 EDGYVGIQKRYDIAFPSLATMEPKLRYQAIESGDINLLDAYSTDSEIRQYKLRVLED--D 430
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
+ F ++R + L++ P I + L + + + EM + + V
Sbjct: 431 QALFPPYQGAPLLRKETLNQYPEIEQSLDKLADQITDDDMREMNYQVNVEGKLAAEVANQ 490
Query: 276 MLRT 279
L
Sbjct: 491 YLVN 494
>gi|218779568|ref|YP_002430886.1| glycine betaine transporter periplasmic subunit [Desulfatibacillum
alkenivorans AK-01]
gi|218760952|gb|ACL03418.1| Substrate-binding region of ABC-type glycine betaine transport
system [Desulfatibacillum alkenivorans AK-01]
Length = 346
Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats.
Identities = 50/343 (14%), Positives = 96/343 (27%), Gaps = 53/343 (15%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLA 63
+A C ++Y V+ A W + LEE LGYK K LA
Sbjct: 14 VAACFIAPAPGMAYQEKPGKGVTVKPARATWNTGFFQEVLVRKGLEE-LGYKAEKPKDLA 72
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND-VGFA 122
P+ ++S+ +D + W+P + +E + + G V+
Sbjct: 73 NPIFYKSVTLGDLDYWCNGWFPMHNSQVPKDFDEKAQTIGYVAKAGGLQGYLVSKRDVEK 132
Query: 123 LGIKSYQDIA--------KYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
IKS D + A + PG + I + ++A
Sbjct: 133 FNIKSLDDFKRPEVIKAFDTNNDGKADLTACPPGWGCEKAIAFHMETYGLKD-YINPVKA 191
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE----------------- 217
S A + ++ PA F +W P+ +
Sbjct: 192 SYEAGIASALAAYKSGKPAFFYTWAPNWTIFKMKPGKDVMWINVPEIIPMETQKPAVDRM 251
Query: 218 -------------ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILN 264
GF + V +L + P R + + NE +
Sbjct: 252 TVSGVEGAVTDPVKLGFVVCDIQIVANKKFLKENPAAKRFFELFTLPLIDINEQNTRMNE 311
Query: 265 NKQDRQFV---GRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLE 304
++ + + + + D W+ + + ++
Sbjct: 312 GEKSAKDIEKHANEWIAKNQDTWNGWIE--------EARKAVK 346
>gi|149204743|ref|ZP_01881707.1| Substrate-binding region of ABC-type glycine betaine transport
system [Roseovarius sp. TM1035]
gi|149141852|gb|EDM29904.1| Substrate-binding region of ABC-type glycine betaine transport
system [Roseovarius sp. TM1035]
Length = 292
Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats.
Identities = 37/297 (12%), Positives = 81/297 (27%), Gaps = 30/297 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEE-ILGYKTNI 59
M ++ I AD+ +T+ + + LE + + I
Sbjct: 1 MKNLVTTLATSAALFIGQGAQADN---FVVGTKNFTEQFILGEIYAAALESIDIPVERKI 57
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIA----------------PYLEEGSIKLV 103
L + +L ID++ Y +L + Y E +K +
Sbjct: 58 NLGGTLIAHAALTGGDIDMYPEYTGTALSAVVKGEMSSDAQVVYDTVKSYYDTELDLKWL 117
Query: 104 AENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK 163
Y + V I G + ++ + N
Sbjct: 118 EPAHINNGYAMLVRRETAEKYNLKTLSDLG-VAAPELSIGGGPEFPDRADGLVGLRNVYG 176
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+ FR+ A V + + + + + +
Sbjct: 177 AEFREFRMF-----AKLGLRYDALAAGQIDVNNGFATDWQIAAEDYVVMEDDKGLF--PP 229
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
V VVR D L++ P +L + + + + K + +++ + V + L+
Sbjct: 230 YFVAPVVRKDALEEFPGAEEMLNRVSDQLDNDIMRTLNKRVEVGREEARDVAQDFLK 286
>gi|322715801|gb|EFZ07372.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Choleraesuis str. A50]
Length = 349
Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats.
Identities = 43/321 (13%), Positives = 90/321 (28%), Gaps = 37/321 (11%)
Query: 4 ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKL 61
I A + ++A D V+ + ++ + T + S LE LGY
Sbjct: 24 IFASAFATLVTASAFAADLPGKGITVQPIQSTISEESFQTLLVSRALE-KLGYTVNKPSE 82
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V + S+ + W P + A + + GA ++
Sbjct: 83 VDYNVGYTSIASGDATFTAVNWQPLHDDMYAAAGGDNKFYREGVFVSGAAQGYLIDKKTA 142
Query: 122 ALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ I + A + G PG I K +
Sbjct: 143 EQYNITNIAQLKDPKIAKIFDTNGDGKADMMGCSPGWGCEAVINHQNKAFDL-QKTVEVS 201
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI-------------- 218
+ A + + P ++ +W P+ ++ + ++
Sbjct: 202 HGNYAAMMADTITRFKEGKPVLYYTWTPYWVSDVMKPGKDVVWLQVPFSSLPGEQKNIDT 261
Query: 219 -------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQF 271
GF +++ V + +K P ++L +K +A N ++ K
Sbjct: 262 KLPNGANYGFPVNTMHIVANKAWAEKNPAAAKLFAIMKLPLADINAQNAMMHAGKSSEAD 321
Query: 272 V---GRTMLRTHPDLLKNWLI 289
V + H W+
Sbjct: 322 VQGHVDGWINAHQQQFDGWVK 342
>gi|300906824|ref|ZP_07124505.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 84-1]
gi|300401425|gb|EFJ84963.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 84-1]
Length = 330
Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats.
Identities = 41/320 (12%), Positives = 94/320 (29%), Gaps = 36/320 (11%)
Query: 4 ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKL 61
+ A + ++A D V + T+ T + S LE LGY
Sbjct: 6 LFATAFATLISTQTFAADLPGKGITVNPVQSTITEETFQTLLVSRALE-KLGYTVNKPSE 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V + SL + W P + + + GA ++
Sbjct: 65 VDYNVGYTSLASGDATSPAVNWTPLHDNMYEAAGGDKKFYREGVFVNGAAQGYLIDKKTA 124
Query: 122 ALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ + + A + G PG I + + +
Sbjct: 125 DQYKITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGWGCEGAINHQLAAYELT-HTVTHN 183
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEEI---------- 218
+ + A + + P + +W P+ ++++ ++ +L
Sbjct: 184 QGNYAAMMADTISRYKEGKPVFYYTWTPYWVSNELKPGKDVVWLQVPFSALPGDKNADTK 243
Query: 219 ------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
GF ++++ V + +K P ++L ++ VA N ++ + K +
Sbjct: 244 LPNGANYGFPVSTMHIVANKAWAEKNPAAAKLFAIMQLPVADINAQNAIMHDGKASEGDI 303
Query: 273 ---GRTMLRTHPDLLKNWLI 289
++ H W+
Sbjct: 304 QGHVDGWIKAHQQQFDGWVN 323
>gi|15925436|ref|NP_372970.1| glycine betaine/carnitine/choline ABC transporter [Staphylococcus
aureus subsp. aureus Mu50]
gi|15928025|ref|NP_375558.1| glycine betaine/carnitine/choline ABC transporter opuCC
[Staphylococcus aureus subsp. aureus N315]
gi|148268883|ref|YP_001247826.1| substrate-binding region of ABC-type glycine betaine transport
system [Staphylococcus aureus subsp. aureus JH9]
gi|150394957|ref|YP_001317632.1| substrate-binding region of ABC-type glycine betaine transport
system [Staphylococcus aureus subsp. aureus JH1]
gi|156980761|ref|YP_001443020.1| glycine betaine/carnitine/choline ABC transporter [Staphylococcus
aureus subsp. aureus Mu3]
gi|253314782|ref|ZP_04837995.1| glycine betaine/carnitine/choline ABC transporter [Staphylococcus
aureus subsp. aureus str. CF-Marseille]
gi|255007221|ref|ZP_05145822.2| glycine betaine/carnitine/choline ABC transporter [Staphylococcus
aureus subsp. aureus Mu50-omega]
gi|257794786|ref|ZP_05643765.1| glycine betaine/carnitine/choline ABC transporter opuCC
[Staphylococcus aureus A9781]
gi|258407466|ref|ZP_05680609.1| glycine betaine/carnitine/choline ABC transporter opuCC
[Staphylococcus aureus A9763]
gi|258422206|ref|ZP_05685118.1| glycine betaine/carnitine/choline ABC transporter [Staphylococcus
aureus A9719]
gi|258439598|ref|ZP_05690344.1| glycine betaine/carnitine/choline ABC transporter opuCC
[Staphylococcus aureus A9299]
gi|258442845|ref|ZP_05691405.1| glycine betaine/carnitine/choline ABC transporter opuCC
[Staphylococcus aureus A8115]
gi|258446454|ref|ZP_05694609.1| glycine betaine/carnitine/choline ABC transporter opuCC
[Staphylococcus aureus A6300]
gi|258450429|ref|ZP_05698521.1| glycine betaine/carnitine/choline ABC transporter [Staphylococcus
aureus A6224]
gi|258455194|ref|ZP_05703154.1| glycine betaine/carnitine/choline ABC transporter opuCC
[Staphylococcus aureus A5937]
gi|269204079|ref|YP_003283348.1| amino acid ABC transporter, amino acid-binding protein
[Staphylococcus aureus subsp. aureus ED98]
gi|282893897|ref|ZP_06302129.1| osmoprotectant transport system substrate-binding protein
[Staphylococcus aureus A8117]
gi|282928483|ref|ZP_06336084.1| osmoprotectant transport system substrate-binding protein
[Staphylococcus aureus A10102]
gi|295405141|ref|ZP_06814954.1| osmoprotectant transport system substrate-binding protein
[Staphylococcus aureus A8819]
gi|296275606|ref|ZP_06858113.1| amino acid ABC transporter, amino acid-binding protein
[Staphylococcus aureus subsp. aureus MR1]
gi|297244196|ref|ZP_06928086.1| osmoprotectant transport system substrate-binding protein
[Staphylococcus aureus A8796]
gi|13702396|dbj|BAB43537.1| glycine betaine/carnitine/choline ABC transporter opuCC
[Staphylococcus aureus subsp. aureus N315]
gi|14248220|dbj|BAB58608.1| glycine betaine/carnitine/choline ABC transporter [Staphylococcus
aureus subsp. aureus Mu50]
gi|147741952|gb|ABQ50250.1| Substrate-binding region of ABC-type glycine betaine transport
system [Staphylococcus aureus subsp. aureus JH9]
gi|149947409|gb|ABR53345.1| Substrate-binding region of ABC-type glycine betaine transport
system [Staphylococcus aureus subsp. aureus JH1]
gi|156722896|dbj|BAF79313.1| glycine betaine/carnitine/choline ABC transporter [Staphylococcus
aureus subsp. aureus Mu3]
gi|257788758|gb|EEV27098.1| glycine betaine/carnitine/choline ABC transporter opuCC
[Staphylococcus aureus A9781]
gi|257840978|gb|EEV65429.1| glycine betaine/carnitine/choline ABC transporter opuCC
[Staphylococcus aureus A9763]
gi|257841637|gb|EEV66074.1| glycine betaine/carnitine/choline ABC transporter [Staphylococcus
aureus A9719]
gi|257847374|gb|EEV71376.1| glycine betaine/carnitine/choline ABC transporter opuCC
[Staphylococcus aureus A9299]
gi|257851966|gb|EEV75900.1| glycine betaine/carnitine/choline ABC transporter opuCC
[Staphylococcus aureus A8115]
gi|257854522|gb|EEV77470.1| glycine betaine/carnitine/choline ABC transporter opuCC
[Staphylococcus aureus A6300]
gi|257856521|gb|EEV79430.1| glycine betaine/carnitine/choline ABC transporter [Staphylococcus
aureus A6224]
gi|257862405|gb|EEV85173.1| glycine betaine/carnitine/choline ABC transporter opuCC
[Staphylococcus aureus A5937]
gi|262076369|gb|ACY12342.1| amino acid ABC transporter, amino acid-binding protein
[Staphylococcus aureus subsp. aureus ED98]
gi|282589878|gb|EFB94962.1| osmoprotectant transport system substrate-binding protein
[Staphylococcus aureus A10102]
gi|282763955|gb|EFC04083.1| osmoprotectant transport system substrate-binding protein
[Staphylococcus aureus A8117]
gi|285818107|gb|ADC38594.1| Osmotically activated L-carnitine/choline ABC transporter,
substrate-binding protein OpuCC [Staphylococcus aureus
04-02981]
gi|294970086|gb|EFG46104.1| osmoprotectant transport system substrate-binding protein
[Staphylococcus aureus A8819]
gi|297178974|gb|EFH38219.1| osmoprotectant transport system substrate-binding protein
[Staphylococcus aureus A8796]
gi|312830791|emb|CBX35633.1| glycine betaine/carnitine/choline-binding (Osmoprotectant-binding
protein) [Staphylococcus aureus subsp. aureus ECT-R 2]
gi|315130917|gb|EFT86902.1| glycine betaine/carnitine/choline ABC transporter [Staphylococcus
aureus subsp. aureus CGS03]
gi|329723626|gb|EGG60155.1| glycine betaine/carnitine/choline-binding protein [Staphylococcus
aureus subsp. aureus 21172]
Length = 313
Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats.
Identities = 31/308 (10%), Positives = 77/308 (25%), Gaps = 34/308 (11%)
Query: 1 MYKI-------LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL 53
M KI + L+ S+ + V+ ++ + M +++E
Sbjct: 1 MKKIKYILVVFVLSLTVLSGCSLPGLGSKSTKNDVKITALSTSESQIISHMLRLLIEHDT 60
Query: 54 GYKTNIKL----LAVPVTFRSLKNKGIDIF-MGYWYPSLEKFIAPYL------------- 95
K L + + +L N +I + Y L +
Sbjct: 61 HGKIKPTLVNNLGSSTIQHNALINGDANISGVRYNGTDLTGALKEAPIKDPKKAMIATQQ 120
Query: 96 -EEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQR 154
+ + G A + ++ K G++ +
Sbjct: 121 GFKKKFDQTFFDSYGFANTYAFMVTKETAKKYHLETVSDLAKHSKDLRLGMDSSWMNRKG 180
Query: 155 ILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPG 214
++ + + V L + + ++ L
Sbjct: 181 DGYEGFKKEYGFDFGTVRP----MQIGLVYDALNTEKLDVALGYSTDGRIAAYDLKVLKD 236
Query: 215 GEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFV 272
+ F + V ++ L + P + + + K S + + ++ V
Sbjct: 237 --DKQFFPPYAASAVATNELLRQHPELKTTINKLTGKISTSEMQRLNYEADGKGKEPAVV 294
Query: 273 GRTMLRTH 280
L+ H
Sbjct: 295 AEEFLKKH 302
>gi|256832833|ref|YP_003161560.1| Substrate-binding region of ABC-type glycine betaine transport
system [Jonesia denitrificans DSM 20603]
gi|256686364|gb|ACV09257.1| Substrate-binding region of ABC-type glycine betaine transport
system [Jonesia denitrificans DSM 20603]
Length = 296
Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats.
Identities = 55/302 (18%), Positives = 106/302 (35%), Gaps = 20/302 (6%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTP----------VRFADTG-WTDIAATTAMTSVIL 49
M K ++ L + + +D + A W + AT+ + + +L
Sbjct: 2 MKKTASLAAVLAGGLVLASCSSDGGDTSQGDAGENKDLSIAVFNGWDEGIATSELWAAVL 61
Query: 50 EEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQG 109
+ GY + F L D W P K + I+ +
Sbjct: 62 ADE-GYNVTLDYADAAPVFVGLSTGDYDFTTDVWLPGTHKEYVEEYGD-QIEDLGSWFDQ 119
Query: 110 AKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
AK +AVN+ I S ++A G +I GIEP + + + L+G
Sbjct: 120 AKLTIAVNEDAP---ITSLAELADNADAFGNQIVGIEPAAGLTSATENEV-IPTYGLEGM 175
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV 229
+S +A S+++ V WEPH S + L E G G +++
Sbjct: 176 DFTTSSTVAMLSELKAATDAGENVVVTLWEPHWAYSAFPVRNLEDPEGALG-GAELIHSY 234
Query: 230 VRSDYLDKCPNISRLLKNIKFSVALENEMMKLI--LNNKQDRQFVGRTMLRTHPDLLKNW 287
R + + P +++ L + L ++ L+ N+ D + + R + + + + +
Sbjct: 235 GRDGFAEDFPEVAQWLGDFSMDPELLYDLEDLLFNENDTDDYEPLVRQWMEENQEFVDSM 294
Query: 288 LI 289
Sbjct: 295 TS 296
>gi|329723321|gb|EGG59851.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Staphylococcus epidermidis
VCU144]
Length = 504
Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats.
Identities = 43/303 (14%), Positives = 89/303 (29%), Gaps = 35/303 (11%)
Query: 2 YKILAVCLFLTTFSISYAR---DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
K+L + I A + FA ++ + T M +++EE
Sbjct: 207 KKLLISLGTIVIVIIIAIAIPMAAQKGDKITFAGKLGSEPSIITNMYKILIEEDTDDTVE 266
Query: 59 IK--LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP-----------------YLEEGS 99
+K + F +LK+ ID ++ + L + ++
Sbjct: 267 VKDGMGKTSFLFNALKSDEIDGYLEFTGTVLGELTKEDLKSKKENDVYQQAKSSLEKKYD 326
Query: 100 IKLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ ++ Y LAV IK+ D+ K + +L N+ +
Sbjct: 327 MTMLKPMKYNNTYALAVKRDFAKKYQIKTIGDLRKVEDKLKPGFTL--EFNDRPDGYKAV 384
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+L + +E + + ++ N+ L +
Sbjct: 385 KKTYHLNLSNVKTMEPKLR------YTAVKKGDINLIDAYSTDAELKQYNMVVLKD--DQ 436
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F + + YL P + + L + + + EM + K+D V R
Sbjct: 437 HVFPLYQGAPLFKEKYLKDHPEVKKPLNKLANRITDEEMQEMNYKVTVKKEDPYKVAREY 496
Query: 277 LRT 279
L
Sbjct: 497 LEK 499
>gi|74313250|ref|YP_311669.1| glycine betaine transporter periplasmic subunit [Shigella sonnei
Ss046]
gi|73856727|gb|AAZ89434.1| high-affinity transport system for glycine betaine and proline
[Shigella sonnei Ss046]
Length = 330
Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats.
Identities = 41/320 (12%), Positives = 94/320 (29%), Gaps = 36/320 (11%)
Query: 4 ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKL 61
+ A + ++A D V + T+ T + S LE LGY
Sbjct: 6 LFATAFATLISTQTFAADLPGKGITVNPVQSTITEETFQTLLVSRALE-KLGYTVNKPSE 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V + SL + W P + + + GA ++
Sbjct: 65 VDYNVGYTSLASGDATFTAVNWTPLHDNMYEAAGGDKKFYCEGIFVNGAAQGYLIDKKTA 124
Query: 122 ALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ + + A + G PG I + + +
Sbjct: 125 DQYKITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGWGCEGAINHQLAAYELT-NTVTHN 183
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEEI---------- 218
+ + A + + P + +W P+ ++++ ++ +L
Sbjct: 184 QGNYAAMMADTISRYKEGKPVFYYTWTPYWVSNELKPGKDVVWLQVPFSALPGDKNADTK 243
Query: 219 ------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
GF ++++ V + +K P ++L ++ VA N ++ + K +
Sbjct: 244 LPNGANYGFPVSTMHIVANKAWAEKNPAAAKLFAIMQLPVADINAQNAIMHDGKASEGDI 303
Query: 273 ---GRTMLRTHPDLLKNWLI 289
++ H W+
Sbjct: 304 QGHVDGWIKAHQQQFDGWVN 323
>gi|313618948|gb|EFR90796.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Listeria innocua FSL
S4-378]
Length = 370
Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats.
Identities = 40/298 (13%), Positives = 88/298 (29%), Gaps = 32/298 (10%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
++ + LT I A + A + M +++E+ K N+K
Sbjct: 78 TISAGILLTAAIIVVPYFASDKKEITIAGKLGAEPEILINMYKLVIEDETDLKVNVKPNM 137
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP-----------------YLEEGSIKLVA 104
F +LK+ IDI+ + LE F+ ++ + +
Sbjct: 138 GKTSFVFNALKSGDIDIYPEFTGTVLETFLKENAKTHDPEKVYTQARDGLAKDFDMTYLK 197
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKF 164
Y LAV+ K +K + D + K
Sbjct: 198 PMEYNNTYALAVSPEFAKEN--------KLEKISDLNPVADQVKAGFTLEFKDRSDGYKG 249
Query: 165 SLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+ L + ++ ++ + ++ + + L E++
Sbjct: 250 IQDKYGLTFQNLKTMEPKLRYNAIKSGDINLLDAYSTDSELAQYKLKVLEDDEQLF--PP 307
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++ + LDK P + + L + K + +M + N + V + L+
Sbjct: 308 YQGAPLMLTKTLDKYPELKKPLNKLAGKITDDEMRKMNYEVNVNGKSAYTVAKDYLQD 365
>gi|16803466|ref|NP_464951.1| hypothetical protein lmo1426 [Listeria monocytogenes EGD-e]
gi|46907654|ref|YP_014043.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Listeria
monocytogenes serotype 4b str. F2365]
gi|47092716|ref|ZP_00230502.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Listeria
monocytogenes str. 4b H7858]
gi|47095377|ref|ZP_00232987.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Listeria
monocytogenes str. 1/2a F6854]
gi|217964426|ref|YP_002350104.1| glycine betaine/carnitine/choline-binding protein
(Osmoprotectant-binding protein) [Listeria monocytogenes
HCC23]
gi|224501633|ref|ZP_03669940.1| glycine betaine/carnitine/choline-binding protein
(Osmoprotectant-binding protein) [Listeria monocytogenes
FSL R2-561]
gi|226224027|ref|YP_002758134.1| glycine betaine/carnitine/choline ABC transporter
(osmoprotectant-binding protein) [Listeria monocytogenes
Clip81459]
gi|254824514|ref|ZP_05229515.1| substrate binding protein OpuCC [Listeria monocytogenes FSL J1-194]
gi|254827714|ref|ZP_05232401.1| opuCC [Listeria monocytogenes FSL N3-165]
gi|254829815|ref|ZP_05234470.1| glycine betaine/carnitine/choline ABC transporter
(osmoprotectant-binding protein) [Listeria monocytogenes
10403S]
gi|254852531|ref|ZP_05241879.1| substrate binding protein OpuCC [Listeria monocytogenes FSL R2-503]
gi|254898408|ref|ZP_05258332.1| glycine betaine/carnitine/choline ABC transporter
(osmoprotectant-binding protein) [Listeria monocytogenes
J0161]
gi|254912101|ref|ZP_05262113.1| glycine betaine/L-proline ABC transporter [Listeria monocytogenes
J2818]
gi|254932611|ref|ZP_05265970.1| substrate binding protein OpuCC [Listeria monocytogenes HPB2262]
gi|254936428|ref|ZP_05268125.1| substrate binding protein OpuCC [Listeria monocytogenes F6900]
gi|254992612|ref|ZP_05274802.1| glycine betaine/carnitine/choline ABC transporter
(osmoprotectant-binding protein) [Listeria monocytogenes
FSL J2-064]
gi|284801812|ref|YP_003413677.1| hypothetical protein LM5578_1567 [Listeria monocytogenes 08-5578]
gi|284994954|ref|YP_003416722.1| hypothetical protein LM5923_1519 [Listeria monocytogenes 08-5923]
gi|290894095|ref|ZP_06557068.1| opuCC [Listeria monocytogenes FSL J2-071]
gi|300765779|ref|ZP_07075755.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Listeria
monocytogenes FSL N1-017]
gi|9651977|gb|AAF91341.1|AF249729_3 substrate binding protein OpuCC [Listeria monocytogenes]
gi|16410855|emb|CAC99504.1| opuCC [Listeria monocytogenes EGD-e]
gi|46880922|gb|AAT04220.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Listeria
monocytogenes serotype 4b str. F2365]
gi|47016198|gb|EAL07121.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Listeria
monocytogenes str. 1/2a F6854]
gi|47018904|gb|EAL09651.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Listeria
monocytogenes str. 4b H7858]
gi|217333696|gb|ACK39490.1| glycine betaine/carnitine/choline-binding protein
(Osmoprotectant-binding protein) [Listeria monocytogenes
HCC23]
gi|225876489|emb|CAS05198.1| Putative glycine betaine/carnitine/choline ABC transporter
(osmoprotectant-binding protein) [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|258600093|gb|EEW13418.1| opuCC [Listeria monocytogenes FSL N3-165]
gi|258605839|gb|EEW18447.1| substrate binding protein OpuCC [Listeria monocytogenes FSL R2-503]
gi|258609020|gb|EEW21628.1| substrate binding protein OpuCC [Listeria monocytogenes F6900]
gi|284057374|gb|ADB68315.1| hypothetical protein LM5578_1567 [Listeria monocytogenes 08-5578]
gi|284060421|gb|ADB71360.1| hypothetical protein LM5923_1519 [Listeria monocytogenes 08-5923]
gi|290556350|gb|EFD89891.1| opuCC [Listeria monocytogenes FSL J2-071]
gi|293584170|gb|EFF96202.1| substrate binding protein OpuCC [Listeria monocytogenes HPB2262]
gi|293590069|gb|EFF98403.1| glycine betaine/L-proline ABC transporter [Listeria monocytogenes
J2818]
gi|293593753|gb|EFG01514.1| substrate binding protein OpuCC [Listeria monocytogenes FSL J1-194]
gi|300513554|gb|EFK40625.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Listeria
monocytogenes FSL N1-017]
gi|307571009|emb|CAR84188.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Listeria
monocytogenes L99]
gi|328474948|gb|EGF45742.1| hypothetical protein LM220_03082 [Listeria monocytogenes 220]
gi|332311867|gb|EGJ24962.1| ABC transport protein [Listeria monocytogenes str. Scott A]
Length = 308
Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats.
Identities = 30/278 (10%), Positives = 73/278 (26%), Gaps = 25/278 (8%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGIDIF 79
S +R T+ + + ++E G K I + V +++ N +DI
Sbjct: 30 GSSKDTIRIGAMATTESQIVSNILKELIEHDTGLKVEIVNNLGSTIVQHQAMLNGDVDIT 89
Query: 80 MGYWY---------------PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
+ P E + G
Sbjct: 90 ATRYTGTDLVGPLGEEAIKDPEKALAAVKKGFEERFHQTWFDSYGFANTYVFMVRQDTAK 149
Query: 125 IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
+ ++ +K G++ + + + ++ ++ I
Sbjct: 150 KYNLNTVSDMRKVENELTAGVDNSWMEREGDGYKAFSKAYDIEFKKIFP----MQIGLIY 205
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
+NN V L + N+ L ++ + + L K P +
Sbjct: 206 TALKNNQMDVALGYSTDGRIPTYNLKLLKDDKKFF--PPYDASALATDEILKKHPELKTT 263
Query: 245 LKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ + K S ++ ++ V + L+ +
Sbjct: 264 INKLKGKISTEEMQKLNYEADGKLKEPSIVAQEFLQKN 301
>gi|114562994|ref|YP_750507.1| glycine betaine transporter periplasmic subunit [Shewanella
frigidimarina NCIMB 400]
gi|114334287|gb|ABI71669.1| Substrate-binding region of ABC-type glycine betaine transport
system [Shewanella frigidimarina NCIMB 400]
Length = 344
Score = 128 bits (322), Expect = 9e-28, Method: Composition-based stats.
Identities = 46/336 (13%), Positives = 93/336 (27%), Gaps = 50/336 (14%)
Query: 1 MYKILAVCLFLTTFSISYARDAD-----SCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
+ K++ AD V+ A W A+ LE LGY
Sbjct: 3 LKKVILGAALAAITMTGSVALADTLKPGEGITVKPARATWDTGFFQEALVRRGLET-LGY 61
Query: 56 KTN-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
K L P+ ++++ ID + W+P + ++ + K+ G
Sbjct: 62 DVEKPKTLVNPIFYKTVTLGDIDYWTNGWFPMHNDQLPKNFDKKAEKIGYVMKAGGLGGY 121
Query: 115 AVNDVGFALGIKSYQDIAKYKK---------ELGAKIYGIEPGNEGNQRILDMINNNKFS 165
V+ + + K + + A + PG + I ++
Sbjct: 122 LVSKKEADKYNITSLEDFKRPEVKKAFDTNGDGKADLTACPPGWGCEKIITHHMDVYGLK 181
Query: 166 LKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE-------- 217
++A+ A + +N P F +W P+ L
Sbjct: 182 DA-INPVKAAYAAGMASAMAGYKNGGPIFFYTWAPNWTIFKLKPGKDVVWINVPEINPTK 240
Query: 218 ----------------------ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
GF + + V + + P + + +A
Sbjct: 241 AQSSAVERMTIKGLEGAVSDPVKLGFVASDIQVVANKKFTKQNPAARKFFEVFTLQLADV 300
Query: 256 NEMMKLILNNKQDRQFV---GRTMLRTHPDLLKNWL 288
NE + + ++ Q + + + D WL
Sbjct: 301 NEQNTRMNDGEKSEQDIQRHVDAWIAKNQDQWNGWL 336
>gi|241896505|ref|ZP_04783801.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Weissella paramesenteroides ATCC 33313]
gi|241870227|gb|EER73978.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Weissella paramesenteroides ATCC 33313]
Length = 520
Score = 128 bits (322), Expect = 9e-28, Method: Composition-based stats.
Identities = 43/307 (14%), Positives = 88/307 (28%), Gaps = 38/307 (12%)
Query: 1 MYKI---LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEE---ILG 54
+ KI L + + I + A + M ++E L
Sbjct: 221 LKKIGILLTSLVAIGGIYIGGQAILQPKGTITIAGKLGGEPEILINMYKELIEADNPRLD 280
Query: 55 YKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS--------------- 99
K +++LK IDI+ + L+ +
Sbjct: 281 VKLKPNFGGTTFIYKALKGGDIDIYPEFTGTVLQSLVKREHVSHQPAQAFKDAQRAIKKQ 340
Query: 100 --IKLVAENLQGAKYMLAVND-VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
+ +A Y LAV +K+ D+AK +L +
Sbjct: 341 DNLTYLAPMKYQNTYALAVRQSDAKKYHLKTTSDLAKLSPQL---------TAGFDHDFY 391
Query: 157 DMINNNKFSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG 215
++ ++ + ++L + S + + N V ++ P + L
Sbjct: 392 ELKDSYPGMKQAYQLQFKKVTSMSSNLRYKALVNKQIDVTDAYTTDPQLKAYKLVALKDD 451
Query: 216 EEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVG 273
+ +VR+ L+K P+I + L + + + EM + + V
Sbjct: 452 RKYF--PPFQGAPLVRTAILNKYPSIQKSLARLDGEITNKDMIEMNYQVTVQHKQADEVA 509
Query: 274 RTMLRTH 280
L H
Sbjct: 510 HQYLVKH 516
>gi|188585361|ref|YP_001916906.1| Substrate-binding region of ABC-type glycine betaine transport
system [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179350048|gb|ACB84318.1| Substrate-binding region of ABC-type glycine betaine transport
system [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 906
Score = 128 bits (322), Expect = 9e-28, Method: Composition-based stats.
Identities = 43/275 (15%), Positives = 95/275 (34%), Gaps = 20/275 (7%)
Query: 26 TPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKG---IDIFMGY 82
++ T W D + + L+ GY + + + + V F + +D
Sbjct: 635 KTIKIGTTPWLDTKLMSHIFHEALKVK-GYDSEVVVSDIGVIFGDIAQDDSQRMDFTFSI 693
Query: 83 WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKI 142
+ P + ++ I V E L G +AV + I S D+ +++ +KI
Sbjct: 694 YLPHNHEHYYEEYQD-DIDKVGEALTGIDQGIAVPEYVS---IDSIDDLKGKEEKFNSKI 749
Query: 143 YGIEPGNEGNQRILDMINNNKFS-----------LKGFRLIEASELASFSQIRRDQRNNI 191
YGI+ G + +++ + +
Sbjct: 750 YGIDAGAGISTETEEVLKKYNLDMELITRGDYKIDDDEYEEYDLHDLMLKNLDEKYQAED 809
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFS 251
P W+P+ + ++ L +EI +AS YT R + P I + N + S
Sbjct: 810 PVAITGWKPYYKWAKWDLKMLEDSKEIYTTADAS-YTFSRKGLEEDLPEIYEAVTNFEMS 868
Query: 252 VALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKN 286
+ N ++ D + + + + + +++++
Sbjct: 869 MEEINSLLLKKEKEDLDFEEIAKKYIDENEEMVES 903
>gi|126650740|ref|ZP_01722956.1| glycine betaine/choline ABC transporter, ATP-binding protein
[Bacillus sp. B14905]
gi|126592405|gb|EAZ86423.1| glycine betaine/choline ABC transporter, ATP-binding protein
[Bacillus sp. B14905]
Length = 505
Score = 128 bits (322), Expect = 9e-28, Method: Composition-based stats.
Identities = 34/304 (11%), Positives = 85/304 (27%), Gaps = 36/304 (11%)
Query: 2 YKILAVCLFLTTFSISYARDA----DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
K + ++ ++ + A + M +++E+
Sbjct: 207 RKTVITVSIVSIAALMMICLPLLNNKDQDEIVIAGKLGAEPEILINMYKLLIEQDTDLTV 266
Query: 58 NIKL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP-----------------YLEEG 98
+K F +LK+ ID++ + ++ +F+ L++
Sbjct: 267 QLKPGLGKTSFVFNALKSGSIDVYPEFTGTAISEFLKQEAINNSEADVYQQAKDGMLKQF 326
Query: 99 SIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ +++ Y LAV++ K ++ D
Sbjct: 327 DMVMLSPMNYNNTYALAVSEDLAETYQLQTISDLKSIEQAVK--------AGFTLEFNDR 378
Query: 159 INNNKFSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
+ K + + S ++ + + + ++ +H L +
Sbjct: 379 EDGYVGIQKRYDIAFPSIATMEPKLRYQAIESGDINLLDAYSTDSEIRQYKLHVLED--D 436
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
+ F ++R + L K P I L + + S EM + + V
Sbjct: 437 QALFPPYQGAPLLRQETLIKYPEIETSLNKLADQISDDEMREMNYQVNVEGKLAAEVANE 496
Query: 276 MLRT 279
L
Sbjct: 497 YLVN 500
>gi|330967401|gb|EGH67661.1| ABC transporter periplasmic substrate-binding protein [Pseudomonas
syringae pv. actinidiae str. M302091]
Length = 300
Score = 128 bits (322), Expect = 9e-28, Method: Composition-based stats.
Identities = 46/306 (15%), Positives = 95/306 (31%), Gaps = 43/306 (14%)
Query: 37 DIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE 96
+ T + I+E+ GY T+ + +L I + W
Sbjct: 3 SGSLITEVLRTIVEKGYGYPTDTLPGSTVSLETALAKNDIQVIAEEWA-GRSPVWVKAEA 61
Query: 97 EGSIKLVAENLQGAKYMLAVNDVG-----------FALGIKSYQDIAKYKKELGA----- 140
EG + + + ++ A V + A +KS +D+A+YK
Sbjct: 62 EGKVFGLGDIVKHADEGWWVPEYVIKGDAAKGIKPMAPELKSVEDLARYKDVFKDPESPE 121
Query: 141 --KIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
+ G + + S A +++ R P +F W
Sbjct: 122 KGRFLNSPSGWTSEIVNTQKLKAYGLNDSFINFRTGSGAALDAEVAAAIRLGKPVLFYYW 181
Query: 199 EPHPINSDLNIHYLPGG-EEISGFG----------------EASVYTVVRSDYLDKCPNI 241
P P+ L + + A++ V +++ + P +
Sbjct: 182 SPTPLLGTYKFIKLEEPAFDAEAWKTLTDASNPNPRGTSSLAATLSIGVSAEFSKQYPEL 241
Query: 242 SRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSR 301
+ K + F + L N+ + + +D + LR +PD+ K WL D +
Sbjct: 242 VSVFKQVDFPIGLLNQTLSDMSKKHEDPKVAATRFLRQNPDVWKAWLP-------ADVAS 294
Query: 302 QLERFM 307
++ +
Sbjct: 295 RVSAAL 300
>gi|298676100|ref|YP_003727850.1| glycine betaine ABC transporter substrate-binding protein
[Methanohalobium evestigatum Z-7303]
gi|298289088|gb|ADI75054.1| Substrate-binding region of ABC-type glycine betaine transport
system [Methanohalobium evestigatum Z-7303]
Length = 311
Score = 128 bits (322), Expect = 9e-28, Method: Composition-based stats.
Identities = 37/312 (11%), Positives = 90/312 (28%), Gaps = 42/312 (13%)
Query: 1 MY-KILAVCLFLTTFSISYARD-----------ADSCTPVRFADTGWTDIAATTAMTSVI 48
M K++A+ L L T + +S + + + M S++
Sbjct: 1 MKWKVIAMVLMLITAIMVSGCAQNPQTNESNSNPNSDETIVIGSKLFQESYILAHMLSIL 60
Query: 49 LEEILGY--KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAE- 105
LE+ GY + L V + +LK ID ++ Y + + + + +
Sbjct: 61 LEDN-GYNTEVEQGLGGTFVNYEALKQGQIDAYVEYSGTAYSQILKKPSPDTWDPQMIYE 119
Query: 106 ---------------NLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYG-IEPGN 149
N G + A+ + +++ + + G
Sbjct: 120 ETKKGLMQEDNVKIANRLGFENAYAIAVDENWAEEHNITKLSQLEGYASNMVIGTDPEFA 179
Query: 150 EGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNI 209
+ + F K ++ + S + + +N+ ++ N +
Sbjct: 180 TREDGLPRIKEVYGFEFKDYK------QGAPSIMYQSIKNDEVDAISAYTTDTKNEKFGL 233
Query: 210 HYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQ 267
L + T++ SD+ P++ L + + +
Sbjct: 234 RVLEDDKGAL--PPYDAITLMTSDFASSHPDVMDTLGQLNNTIDQETMRNLNYQYDVENK 291
Query: 268 DRQFVGRTMLRT 279
+ + + R L
Sbjct: 292 EAKDIARQFLEN 303
>gi|315282315|ref|ZP_07870749.1| glycine betaine/carnitine/choline-binding protein [Listeria marthii
FSL S4-120]
gi|313614036|gb|EFR87746.1| glycine betaine/carnitine/choline-binding protein [Listeria marthii
FSL S4-120]
Length = 308
Score = 128 bits (322), Expect = 9e-28, Method: Composition-based stats.
Identities = 30/278 (10%), Positives = 73/278 (26%), Gaps = 25/278 (8%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGIDIF 79
S +R T+ + + ++E G K I + V +++ N +DI
Sbjct: 30 GSSKDTIRIGAMATTESQIVSNILKELIEHDTGLKVEIVNNLGSTIVQHQAMLNGDVDIT 89
Query: 80 MGYWY---------------PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
+ P E + G
Sbjct: 90 ATRYTGTDLVGPLGEDAIKDPEKALAAVKKGFEERFHQTWFDSYGFANTYVFMVRQDTAK 149
Query: 125 IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
+ ++ +K G++ + + + ++ ++ I
Sbjct: 150 KYNLNTVSDMRKVENELTAGVDNSWMEREGDGYKAFSKAYDIEFKKIFP----MQIGLIY 205
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
+NN V L + N+ L ++ + + L K P +
Sbjct: 206 TALKNNQMDVALGYSTDGRIPTYNLKLLKDDKKFF--PPYDASALATDEILKKHPELKTT 263
Query: 245 LKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ + K S ++ ++ V + L+ +
Sbjct: 264 INKLKGKISTEEMQKLNYEADGKLKEPSIVAQEFLQKN 301
>gi|237735738|ref|ZP_04566219.1| ABC glycine betaine transporter permease [Mollicutes bacterium D7]
gi|229381483|gb|EEO31574.1| ABC glycine betaine transporter permease [Coprobacillus sp. D7]
Length = 513
Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats.
Identities = 35/296 (11%), Positives = 80/296 (27%), Gaps = 33/296 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
++ V + + + + A T+ AM ++E+ K I
Sbjct: 222 VVIVTTCAVLIISMISGNLNQTVTLNIATKPMTEQYIIGAMLKEMIEQDTDIKVKITQGV 281
Query: 62 -LAVPVTFRSLKNKGIDIFMGYWYPSLEKFI---------------APYLEEGSIKLVAE 105
+ + D++ Y + Y E+
Sbjct: 282 GGGTSNIQPGMVSGEFDLYPEYTSTGWNTVLKHEGFYNETMYEQLVKEYQEKYQFTWTGL 341
Query: 106 NLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKF 164
Y LAV +K+Y D+A +L ++
Sbjct: 342 LGFSDAYGLAVRKEIAEQYNLKTYLDLAGISNQLV---------FGAEYDFYEIPEGYDA 392
Query: 165 SLKGFRLIEAS-ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+ + + + V + S N+ L ++
Sbjct: 393 LCQKYNFTFKNTMDLDIGLKYQAINEGKVDVMDVFTTDGQLSTANVVVLEDDQQFFSTSM 452
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
++ VVR++ L++ P ++ + + + ++ L+ QD + V L
Sbjct: 453 GAL--VVRNEILEQYPELNNVFDKLTGILNETKMAQLNYLVETKGQDAEDVAHEFL 506
>gi|315651560|ref|ZP_07904580.1| glycine/betaine ABC superfamily ATP binding cassette transporter,
membrane protein [Eubacterium saburreum DSM 3986]
gi|315486215|gb|EFU76577.1| glycine/betaine ABC superfamily ATP binding cassette transporter,
membrane protein [Eubacterium saburreum DSM 3986]
Length = 512
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 40/297 (13%), Positives = 82/297 (27%), Gaps = 31/297 (10%)
Query: 3 KILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+ILAV + F I + A T+ M + +E +I
Sbjct: 218 RILAVISLVLIFCIFIVGLLPKKNKNIIHLATKPMTEQYILGEMLKLYIERNTNLSVDIT 277
Query: 61 L---LAVPVTFRSLKNKGIDIFMGYWYPSLEKFI---------------APYLEEGSIKL 102
++++ D++ Y + Y E+ +
Sbjct: 278 QGVGGGTSNIEPAMESGEFDLYPEYTGTGWNMVLKHENQYSEVQFDILQKEYQEKLGLTW 337
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
Y +AV + + +K G I G E Q DM+
Sbjct: 338 DVMLGFNNTYGIAVRKDIAVKN--DIKTYSDLQKLNGKLILGAEYDFFERQDGYDMLRK- 394
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
++ + + V + ++ +L + +
Sbjct: 395 ----TYNLSFASTSDMDMGLKYQAINSGKIDVMPVNTTDGQLAQADVVFLEDDKG--MYP 448
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
VVR + LDK P + L+ + + M + + K++ + V + L
Sbjct: 449 SYQAGMVVREEILDKYPQLHSALQKFDKLINESDIQRMNYEVESEKKEPRDVAKAFL 505
>gi|242372100|ref|ZP_04817674.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Staphylococcus epidermidis
M23864:W1]
gi|242350212|gb|EES41813.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Staphylococcus epidermidis
M23864:W1]
Length = 313
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 29/298 (9%), Positives = 78/298 (26%), Gaps = 27/298 (9%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
I L L+ S+ D ++ V+ T ++ M +++E K L
Sbjct: 11 IALSLLVLSGCSLPGLGDGNAKDDVKITTTETSETKIIANMEKLMIEHETKGKIKPTLIG 70
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWY---------------PSLEKFIAPYLEEGSIKLVA 104
+ + +L+ +++ + P L +
Sbjct: 71 NLGSSIIQHNALQRGDVNMSAVRYTGTELTSVLDAKPTKDPKKAMSETQRLFKKKYDQKY 130
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKF 164
N G A + ++ +K G++ +
Sbjct: 131 YNSLGFANTYAFMVTKETAKKYHLEKVSDLEKYKDKLRLGMDTQWMNRAGDGYPAFVKDY 190
Query: 165 SLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEA 224
K +++ + +N V + + + ++ L +
Sbjct: 191 GFKF----DSARPMQIGLVYDALKNKKLDVAVGYSTDGRIAAYDLKILKDDRKFF--PPY 244
Query: 225 SVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ + P I + LK ++ + ++ ++ + L+ H
Sbjct: 245 DGSPLATEKLVKDNPKIDKALKKLQGRITTKEMQKLNYEADGKGKEPAVIAEEYLKKH 302
>gi|16800533|ref|NP_470801.1| hypothetical protein lin1465 [Listeria innocua Clip11262]
gi|16413938|emb|CAC96696.1| opuCC [Listeria innocua Clip11262]
Length = 308
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 30/278 (10%), Positives = 73/278 (26%), Gaps = 25/278 (8%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGIDIF 79
S +R T+ + + ++E G K I + V +++ N +DI
Sbjct: 30 GSSKDTIRIGAMATTESQIVSNILKELIEHDTGLKVEIVNNLGSTIVQHQAMLNGDVDIT 89
Query: 80 MGYWY---------------PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
+ P E + G
Sbjct: 90 ATRYTGTDLVGPLGEDAIKDPEKALAAVKKGFEERFHQTWFDSYGFANTYVFMVRQDTAK 149
Query: 125 IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
+ ++ +K G++ + + + ++ ++ I
Sbjct: 150 KYNLTTVSDMRKVENELTAGVDNSWMEREGDGYKAFSKAYDIEFKKIFP----MQIGLIY 205
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
+NN V L + N+ L ++ + + L K P +
Sbjct: 206 TALKNNQMDVALGYSTDGRIPTYNLKLLKDDKKFF--PPYDASALATDEILKKHPELKTT 263
Query: 245 LKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ + K S ++ ++ V + L+ +
Sbjct: 264 INKLKGKISTEEMQKLNYEADGKLKEPSIVAQEFLQKN 301
>gi|116332927|ref|YP_794454.1| ABC-type proline/glycine betaine transport system, permease and
substrate binding protein [Lactobacillus brevis ATCC
367]
gi|116098274|gb|ABJ63423.1| ABC-type proline/glycine betaine transport system, permease and
substrate binding protein [Lactobacillus brevis ATCC
367]
Length = 506
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 41/293 (13%), Positives = 84/293 (28%), Gaps = 18/293 (6%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEE---ILGYKTNIK 60
+LA + L Y + +S T + A ++ M ++E + T
Sbjct: 212 VLATLVVLIGGFAGYRQVTNSQTTLTVAGKLGSEPEILINMYKDLIEHDHPNIKVNTKAN 271
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEG----SIKLVAENLQGAKYMLAV 116
A F++L++ IDI+ + LE + +A++ ++Y +A
Sbjct: 272 FGATSFLFKALQSGSIDIYPEFTGTVLESLVKTKQSASHSPAKTYQLAKSALKSQYQMAY 331
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIE------PGNEGNQRILDMINNNKFSLKGFR 170
++ K+ K + + + +
Sbjct: 332 LKPMAYQNGYDLAVTRQFAKKYHVKTISDLIQVENRVHAGFDPDFNQQKDGYPGLRQAYG 391
Query: 171 LIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV 229
L AS I + N + + P ++ L +
Sbjct: 392 LKFASIKTMEPSIRYKAIANGKVNLVDGYTTDPEVQAYHLVVLKDDRNFF--PPYQGAPL 449
Query: 230 VRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ L P + L + K + +M + Q V R LR+H
Sbjct: 450 MSEKLLTDHPELRTTLNKLAGKVTTTDMQKMNYQVSVKHQKAAVVARDYLRSH 502
>gi|295106335|emb|CBL03878.1| Periplasmic glycine betaine/choline-binding (lipo)protein of an
ABC-type transport system (osmoprotectant binding
protein) [Gordonibacter pamelaeae 7-10-1-b]
Length = 301
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 32/291 (10%), Positives = 70/291 (24%), Gaps = 31/291 (10%)
Query: 10 FLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL---LAVPV 66
+ + ++A V A T+ M + ++E +
Sbjct: 17 LIAGGAFAFANRDGGDNVVNIATKPMTEQYILGEMLNTLIEHDTDLNVELTQGVGGGTSN 76
Query: 67 TFRSLKNKGIDIFMGYWYPSLEKFIA---------------PYLEEGSIKLVAENLQGAK 111
++ D++ Y + Y + + V
Sbjct: 77 IEPGMEKGDFDLYPEYTGTGWNAVLKHDDTYDESMFDAMQQEYESQLGLTWVGMYGFNNT 136
Query: 112 YMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEP-GNEGNQRILDMINNNKFSLKGFR 170
Y LAV+ + + G EP + + + +
Sbjct: 137 YGLAVSKDVAERY--DLRTYSDLAGVASELTLGAEPDFYDRQDGYPGLQDAYGMAFG--- 191
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
A+ S + + +D + L + + VV
Sbjct: 192 ---ATRDMDISLKYQALFEGQVDAIVVSTTDGQVADERLAVLED--DRHFYPSYLCGNVV 246
Query: 231 RSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
R D L++ P + L + + M + Q+ + V L
Sbjct: 247 RQDALERHPELRDELLKLQGTITDIDMARMNNAVETQGQEPKAVADAFLAE 297
>gi|260904593|ref|ZP_05912915.1| glycine betaine-binding periplasmic protein [Brevibacterium linens
BL2]
Length = 303
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 52/302 (17%), Positives = 100/302 (33%), Gaps = 22/302 (7%)
Query: 1 MYK-----ILAVCLFLTTFSISYARDADSCTP--------VRFADT-GWTDIAATTAMTS 46
M + +A L +++A ++ GWTD + + +
Sbjct: 1 MKRRFLTTFVAGVAALGLALTGCSQEAAKDDGSGGGDKGDIKLGYVTGWTDGQSISLLLE 60
Query: 47 VILEEILGYKTNI-KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAE 105
L +GY V + + N ID++ W K + ++ +
Sbjct: 61 DQL-GKMGYNVETETFNDAAVLYAGVANGDIDMYPSSWPEVTHKQYIDEYGD-KLEDLGA 118
Query: 106 NLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFS 165
+ A +AV I S +D+ K+ KI GIEPG MI
Sbjct: 119 YYENAVLTIAVPKY--MKDINSIEDLKGKGKDFDGKIIGIEPGAGLTAATKKMIPEYGLD 176
Query: 166 LKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEAS 225
+ L+ +S A +++ V W P N+ + L + G E
Sbjct: 177 K-EYELVTSSTAAMLTELGNATDAEEDIVVTLWRPFWANNAYPVKDLKDPKGAMGEAE-K 234
Query: 226 VYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVG-RTMLRTHPDLL 284
++ + D+ + + + IK ++ L++N +D L+ +PD
Sbjct: 235 LHFTATKGFSDEFSDAADYVGKIKMDDKQYGDLEDLVVNKHKDDGEAAIAEWLKANPDAY 294
Query: 285 KN 286
+
Sbjct: 295 EG 296
>gi|284028088|ref|YP_003378019.1| Substrate-binding region of ABC-type glycine betaine transport
system [Kribbella flavida DSM 17836]
gi|283807381|gb|ADB29220.1| Substrate-binding region of ABC-type glycine betaine transport
system [Kribbella flavida DSM 17836]
Length = 319
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 43/287 (14%), Positives = 93/287 (32%), Gaps = 19/287 (6%)
Query: 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDI 78
A C A + W A A+ + + + LG N K L ++++ +D
Sbjct: 33 AAGGKECGTFNLAVSPWVGYEANAAVVAYVATKDLGCTVNKKNLKEEISWQGFATGEVDA 92
Query: 79 FMGYWYPSLEKFIAPYLEEGSI-KLVAENLQGAKYMLAVNDVGF--ALGIKSYQDIAKYK 135
+ W E Y+E+ + +V + + +K ++++ KY
Sbjct: 93 VLENWG--HEDLKKKYVEQQKVAVVVGPSGNQGVIGWYLPPWLAAQHPELKDWKNLNKYA 150
Query: 136 KELGAKIYGIEPG---NEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIP 192
G + + + D L + SE A R ++N P
Sbjct: 151 SLFKTSESGGKGQLLDGDPSFVTNDEALVKNLKLNFKVVYAGSETALIQAFRDAEKNKKP 210
Query: 193 AVFLSWEPHPINSDLNIHYLPGGEE-----------ISGFGEASVYTVVRSDYLDKCPNI 241
+ +EP ++L + + + + ++ +V + D
Sbjct: 211 VIGYFYEPQWFFNELKLVKVDLPKHTPGCDADPAKVACDYPAYALDKIVSKKFADSGSPA 270
Query: 242 SRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
L+KN ++ +N++ K I +K + + + WL
Sbjct: 271 YDLVKNFSWTNDDQNQVAKYIAEDKLSPDAAAEKWVNDNRAKVDGWL 317
>gi|167757174|ref|ZP_02429301.1| hypothetical protein CLORAM_02724 [Clostridium ramosum DSM 1402]
gi|167703349|gb|EDS17928.1| hypothetical protein CLORAM_02724 [Clostridium ramosum DSM 1402]
Length = 513
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 34/296 (11%), Positives = 80/296 (27%), Gaps = 33/296 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
++ V + + + + A T+ AM ++E+ + I
Sbjct: 222 VVIVTTCAVLIISMISGNLNQTVTLNIATKPMTEQYIIGAMLKEMIEQDTDIEVKITQGV 281
Query: 62 -LAVPVTFRSLKNKGIDIFMGYWYPSLEKFI---------------APYLEEGSIKLVAE 105
+ + D++ Y + Y E+
Sbjct: 282 GGGTSNIQPGMVSGEFDLYPEYTSTGWNTVLKHEGFYNETMYEQLVKEYQEKYQFTWTGL 341
Query: 106 NLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKF 164
Y LAV +K+Y D+A +L ++
Sbjct: 342 LGFSDAYGLAVRKEIAEQYNLKTYSDLAGISNQLV---------FGAEYDFYEIPEGYDA 392
Query: 165 SLKGFRLIEAS-ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+ + + + V + S N+ L ++
Sbjct: 393 LCQKYNFTFKNTMDLDIGLKYQAINEGKVDVMDVFTTDGQLSTANVVVLEDDQQFFSTSM 452
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
++ VVR++ L++ P ++ + + + ++ L+ QD + V L
Sbjct: 453 GAL--VVRNEILEQYPELNNVFDKLTGILNETKMAQLNYLVETKGQDAEDVAHEFL 506
>gi|59714233|ref|YP_207008.1| glycine betaine-binding protein [Vibrio fischeri ES114]
gi|59482481|gb|AAW88120.1| glycine betaine-binding protein [Vibrio fischeri ES114]
Length = 263
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 47/261 (18%), Positives = 90/261 (34%), Gaps = 3/261 (1%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWY 84
+ T + T ++ S IL +G+ F LK+ +D+ W
Sbjct: 2 KNKIILGVTDLSFHRITASIISHIL-INMGFDVERIYSPHQDNFTKLKSGEVDMIASAWL 60
Query: 85 PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKI 142
PS +EE L + + D + +D+ K + +I
Sbjct: 61 PSSHGIYKADVEEKVELLELGLHYKPYALWGIPDYIPESAVSEIKDLLKPNILSRMNRRI 120
Query: 143 YGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP 202
GI PG + + M+N+ + G+ SE F+ N V W+P
Sbjct: 121 QGINPGAGITRFSIKMMNSYGLTRAGYTFYTGSEEDCFTAFEAAIENKEWVVVPLWKPQF 180
Query: 203 INSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI 262
++ NI + + + G + +V + + +D + L ++KFS + + +
Sbjct: 181 LHHKHNIREISEPKGLLGVIDRAVLLLRQDKSIDFTQEQIKQLDSLKFSNEIIAALDYQV 240
Query: 263 LNNKQDRQFVGRTMLRTHPDL 283
+ V + L H D
Sbjct: 241 SREGKAIDEVTKQWLINHHDR 261
>gi|210621362|ref|ZP_03292598.1| hypothetical protein CLOHIR_00541 [Clostridium hiranonis DSM 13275]
gi|210154786|gb|EEA85792.1| hypothetical protein CLOHIR_00541 [Clostridium hiranonis DSM 13275]
Length = 520
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 27/289 (9%), Positives = 78/289 (26%), Gaps = 29/289 (10%)
Query: 11 LTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPVTF 68
+ +F+ S S + +T+ + +E+ K N + L A +
Sbjct: 236 IGSFAFSALTKVTSDREITIGSMDFTEQEILNYILKYYIEDNSDIKVNQSLSLGASSIVL 295
Query: 69 RSLKNKGIDIFMGYWYPSLEKFIAPYLE----------------EGSIKLVAENLQGAKY 112
++K +D+++ Y + + ++ ++ Y
Sbjct: 296 DAIKGGDVDLYVDYTGTIYGSVLGKEPNSDVEEVYNTVKDEMKSQYNLNVLKSLGFNNTY 355
Query: 113 MLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
LAV + K+ ++ + + + ++
Sbjct: 356 TLAVKKETAEKYNLETISDLAR---VSNKLVFSPTLTFVERKDCLVGLQETYPVNFKDIV 412
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRS 232
+ V ++ + ++ L ++ + V
Sbjct: 413 PIDGSPR----YTALMSGECDVIDAYSTDGLLKKFDLKVLKDDKQFFL--PYNAIPVTND 466
Query: 233 DYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+ P + +LL + + ++ + KQ V + L+
Sbjct: 467 RVKEDFPEVEKLLNELGQYLNEETMVDLNYRVDELKQKPSDVAKDFLQE 515
>gi|288576399|ref|ZP_05978724.2| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Neisseria mucosa ATCC
25996]
gi|288565600|gb|EFC87160.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Neisseria mucosa ATCC
25996]
Length = 509
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 36/305 (11%), Positives = 77/305 (25%), Gaps = 39/305 (12%)
Query: 5 LAVCLFLTTFSISYA---RDADSCTPVRFADTGWTDIAATTAMTSVILEEILG---YKTN 58
+ L I A + S + A ++ M ++EE
Sbjct: 207 ITAALLAILIGIGLAPIFQTNPSAQKITIAGKLGSEPDILINMYKQLIEENNPRAQVAIK 266
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYP---------------------SLEKFIAPYLEE 97
F +L + IDI+ + + + +
Sbjct: 267 PNFGKTSFLFNALNSGEIDIYPEFTGTVLESLVKVPAAQQNRRLSPEQTYQTAKDLLTRQ 326
Query: 98 GSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILD 157
+ + Y LAV+ A K + D
Sbjct: 327 HRLTFLPPMAYQNTYALAVSQDYAAAHNLHKISDLKRVQNQIR--------AGFTLEFTD 378
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
+ K + + N + ++ + L +
Sbjct: 379 RADGYKGLQQHGIQFRHLSTLEPALRYTALLNGKIDLVEAYSTDSDLKQYRLAVLSD--D 436
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
I+ F ++++++ ++ P+I L + K S A EM + + V R
Sbjct: 437 IALFPSYQGAPLMKTEFAEQHPDIVNALNKLAGKISEAEMTEMNYRVKVGGEKPADVARD 496
Query: 276 MLRTH 280
L+ +
Sbjct: 497 YLQKN 501
>gi|91225728|ref|ZP_01260757.1| Putative ABC transport protein [Vibrio alginolyticus 12G01]
gi|269968442|ref|ZP_06182457.1| hypothetical protein VMC_38870 [Vibrio alginolyticus 40B]
gi|91189617|gb|EAS75892.1| Putative ABC transport protein [Vibrio alginolyticus 12G01]
gi|269826941|gb|EEZ81260.1| hypothetical protein VMC_38870 [Vibrio alginolyticus 40B]
Length = 293
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 38/300 (12%), Positives = 89/300 (29%), Gaps = 31/300 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+ +I L + S+ A+ + +T+ T +TS L + GY + +
Sbjct: 2 LKQITRRLLAVGVLLSSFHASAE----IVVGGKNFTEQQLLTEITSQYLTKK-GYDVDKR 56
Query: 61 LL-AVPVTFRSLKNKGIDIFMGYWYPSLEKF---------------IAPYLEEGSIKLVA 104
V ++ +N ID++ Y SL + + + + +
Sbjct: 57 SGMGSAVLRKAQENGQIDLYWEYTGTSLIIYNKVKDKLPAEQVYQRVKELDAKKGLVWLN 116
Query: 105 ENLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKKELGAKIYGIEPGNEGN-QRILDMINNN 162
+ Y LA+ GI + + A+ ++ + +
Sbjct: 117 PSKANNTYALAMRSDDAKQRGISTLSEFAEQMRQDPPMTIALNAEFYARKDGFRPLQKTY 176
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
KF ++ + L + L + F
Sbjct: 177 KFKASRDQVKRMD----TGLTYDALKGQEVDAALVFATDGRIKAFGFTVLTD--DKQFFP 230
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ ++ VVR + LD P+++ + + + + + + ++ V L H
Sbjct: 231 DYAITPVVRQETLDANPDLAEQMNALSAAIDGDTMSTLNQQVDVERRSISEVASQFLSEH 290
>gi|326624545|gb|EGE30890.1| glycine/betaine/proline transport protein [Salmonella enterica
subsp. enterica serovar Dublin str. 3246]
Length = 349
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 43/321 (13%), Positives = 89/321 (27%), Gaps = 37/321 (11%)
Query: 4 ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKL 61
I A + ++A D V+ + ++ T + S LE LGY
Sbjct: 24 IFASAFATLVTASAFAADLPGKGITVQPIQSTISEETFQTLLVSRALE-KLGYTVNKPSE 82
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V + S+ + W P + A + + GA ++
Sbjct: 83 VDYNVGYTSIASGDATFTAVNWQPLHDDMYAAAGGDNKFYREGVFVSGAAQGYLIDKKTA 142
Query: 122 ALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ I + A + G PG I K +
Sbjct: 143 EQYNITNIAQLKDPKIAKIFDTNGDGKADMMGCSPGWGCEAVINHQNKAFDL-QKTVEVS 201
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI-------------- 218
+ A + + P ++ +W P+ ++ + ++
Sbjct: 202 HGNYAAMMADTITLFKEGKPVLYYTWTPYWVSDVMKPGKDVVWLQVPFSSLPGEQKNIDT 261
Query: 219 -------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQF 271
GF +++ V + +K P ++L +K +A N ++ K
Sbjct: 262 KLPNGANYGFPVNTMHIVANKAWAEKNPAAAKLFAIMKLPLADINAQNAMMHAGKSSEAD 321
Query: 272 V---GRTMLRTHPDLLKNWLI 289
V + H W+
Sbjct: 322 VQGHVDGWINAHQQQFDGWVK 342
>gi|258513838|ref|YP_003190060.1| Substrate-binding region of ABC-type glycine betaine transport
system [Desulfotomaculum acetoxidans DSM 771]
gi|257777543|gb|ACV61437.1| Substrate-binding region of ABC-type glycine betaine transport
system [Desulfotomaculum acetoxidans DSM 771]
Length = 299
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 28/156 (17%), Positives = 58/156 (37%), Gaps = 5/156 (3%)
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
++ +I GIEPG ++ I + F L ++S + + +N +
Sbjct: 40 EKFNGEIIGIEPGAGLMKKTEQAIKDYGLD---FTLRDSSSAGMSATLANKIKNKEWVIV 96
Query: 196 LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
W PH + ++ YL +++ G E + T+ R + P ++L N ++
Sbjct: 97 TGWTPHWKWAAYDLKYLEDPKKVFGE-EEHISTIARKGLAEDKPEAYKILDNFHWTPDDM 155
Query: 256 NEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGV 291
+M + + + H D + W V
Sbjct: 156 QTVMLDVH-EGMSPDDAAKKWIAAHRDKVVEWTKDV 190
Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 20/100 (20%), Positives = 41/100 (41%), Gaps = 2/100 (2%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFM 80
A + V+ W A+T + ++ + LG+K + + ++ + D +
Sbjct: 193 SAAAGKTVKLGYVEWDSEIASTHVVKNVM-QDLGFKAEATPVDNAIMWQGVSQGSFDAMV 251
Query: 81 GYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
W P + +++ +I + NL+GAK L V D
Sbjct: 252 SAWLPGTHGDLYDKVKD-TIDNLGPNLEGAKIGLVVPDYV 290
>gi|304408623|ref|ZP_07390244.1| Substrate-binding region of ABC-type glycine betaine transport
system [Shewanella baltica OS183]
gi|304352444|gb|EFM16841.1| Substrate-binding region of ABC-type glycine betaine transport
system [Shewanella baltica OS183]
Length = 344
Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats.
Identities = 45/336 (13%), Positives = 93/336 (27%), Gaps = 50/336 (14%)
Query: 1 MYKILAVCLFLTTFSISYARDAD-----SCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
+ ++ A AD V+ A W A+ LE LGY
Sbjct: 3 LKNVILGAALAAMTVTGSAALADTLKPGEGITVKPARATWDTGFFQEALVRRGLET-LGY 61
Query: 56 KTN-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
K L P+ ++++ ID + W+P + +E + K+ G
Sbjct: 62 DVEKPKTLVNPIFYKTVTLGDIDYWANGWFPMHNDQLPSNFDEKAEKIGYVIKAGGLGGY 121
Query: 115 AVNDVGFALGIKSYQDIAKYKK---------ELGAKIYGIEPGNEGNQRILDMINNNKFS 165
++ + K + + A + PG + I ++
Sbjct: 122 LISKKEADKYKITSLADFKRPEVKQAFDTNGDGKADLTACPPGWGCEKIITHHMDVYGLK 181
Query: 166 LKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE-------- 217
++A+ A + +N P F +W P+ +
Sbjct: 182 DS-INPVKAAYAAGMASAMAGYKNGGPIFFYTWAPNWTIFKMKPGKDVVWINVPEIKPTK 240
Query: 218 ----------------------ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
GF + + V + + P + + +A
Sbjct: 241 AQSAAVDRMTVKGLEGAVSDPIKLGFVASDIQIVANKKFAKQNPAARKFFEVFTLPLADI 300
Query: 256 NEMMKLILNNKQDRQFV---GRTMLRTHPDLLKNWL 288
NE + + ++ +Q + + + D WL
Sbjct: 301 NEQNTRMNDGEKSKQDIQHHVDGWIAKNQDKWNGWL 336
>gi|291617524|ref|YP_003520266.1| OpuCC [Pantoea ananatis LMG 20103]
gi|291152554|gb|ADD77138.1| OpuCC [Pantoea ananatis LMG 20103]
Length = 303
Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats.
Identities = 42/300 (14%), Positives = 94/300 (31%), Gaps = 33/300 (11%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK-LLA 63
+ S++ ++ + TP+ A +T+ +AMT + L++ G++ K +A
Sbjct: 6 IKSSTLALVASMALSQSVQAATPLVLATKSFTEQHILSAMTVMWLQKK-GFEVIPKRNIA 64
Query: 64 VPVTFRSLKNKGIDIFMGYWYPS---------------LEKFIAPYLEEGSIKLVAENLQ 108
++ ++ NK ID+ Y S K + + + +
Sbjct: 65 TTISRNAMINKQIDMTWEYTGTSLIIFNHINKPMSSEDAYKTVKNLDGKLGLIWLNPAPM 124
Query: 109 GAKYMLAVNDVGFALGIKS--------YQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN 160
Y A+ S + K + ++ + + +
Sbjct: 125 NNTYAFAMQRARAEKEGISTLSQLVAKMDQVRKTDPKHNWRLGLDLEFYGRSDGMKPLQK 184
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISG 220
+L ++ + + R+ L + ++ L +
Sbjct: 185 TYNLTLDRPQIRQMDPG----LVYNAVRDGFVDAGLIYTTDGRVKGFDLKVLED--DKHF 238
Query: 221 FGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLR 278
F +V VVR D L P + L + + E+ K + + Q + V R L+
Sbjct: 239 FPSYNVTPVVRQDVLASHPGLEAALNQLSPLITDEAITELNKRVDIDHQSPEQVARDFLQ 298
>gi|309811678|ref|ZP_07705457.1| ABC transporter, substrate-binding protein, QAT family [Dermacoccus
sp. Ellin185]
gi|308434479|gb|EFP58332.1| ABC transporter, substrate-binding protein, QAT family [Dermacoccus
sp. Ellin185]
Length = 322
Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats.
Identities = 25/293 (8%), Positives = 67/293 (22%), Gaps = 23/293 (7%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLA 63
+ + + +T+ + ++L+ G K +
Sbjct: 27 GLTTSAKLAGPLASVKKLDGLDIAVGSKDFTEQQILGKIAVIMLQSG-GAKVKDFTAIPG 85
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFI----------------APYLEEGSIKLVAENL 107
+ ++ + + M Y + ++ + +
Sbjct: 86 SAASRQAQLTGQVQLIMEYTGTAWITYMGKTDPIADSRKQYEAVKAEDAKNGFTWLEPAP 145
Query: 108 QGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
Y L + K N M+ +
Sbjct: 146 MNNTYSLGMRQDFAKKYGLKDLSDLKKVPVGERTFCIESEFANRNDGFQPMLKAYGMTYG 205
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
I + + + L++ + F +V
Sbjct: 206 KDVPTGNIRKMDTGAIYSAIDQKVCNLGEVFTTDGRIKSLHLDVMSDS--KHFFPNYNVS 263
Query: 228 TVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
VV++ D P I+++L+ + K ++ + +D V L+
Sbjct: 264 PVVKTTIYDTYPQIAQILEPVVKKLDNDTLIDLNARVDVEGKDPGKVAEEWLK 316
>gi|7542433|gb|AAF63445.1|AF218267_2 glycine betaine/L-proline-binding periplasmic protein [Pseudomonas
putida]
Length = 342
Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats.
Identities = 42/305 (13%), Positives = 83/305 (27%), Gaps = 35/305 (11%)
Query: 17 SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKLLAVPVTFRSLKNKG 75
+ A V + + L E LGYK K V +L N
Sbjct: 28 ASAEKPGDGVKVTPIFPSIAEERFRGEVAMEGLRE-LGYKVQEPKETEYGVMMVALANGD 86
Query: 76 IDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG---------IK 126
D + W +F + + + L G ++
Sbjct: 87 ADFTVHLWDKLHNQFYQQAGGDDVMVKTGDILPGVAQGYLIDKKTADQYNIKYITDLKKP 146
Query: 127 SYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRD 186
+ + A + G PG I + + + S A +
Sbjct: 147 EIAKLFDTDGDGKADMTGCNPGWGCELVIAHHMKAYDLDKS-ITVNQGSYFALMADTITR 205
Query: 187 QRNNIPAVFLSWEPHP----INSDLNIHYLPGGEEISGFGEASVYT-------------- 228
+ P + +W P + ++ +L + G+ V T
Sbjct: 206 YKEGKPVFYFTWVPQWIASVLVEGKDVVWLEVPKTDLPDGKNDVDTTYHGKNLGFAIDKV 265
Query: 229 --VVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV---GRTMLRTHPDL 283
V+ D+ +K P + L ++ S A E+ + ++ + + + + H
Sbjct: 266 VAVLNKDFAEKNPAAVKFLSQVQISTADESNQNLKMQQGEKKPKDIERHAKEWVAAHRQQ 325
Query: 284 LKNWL 288
WL
Sbjct: 326 FDQWL 330
>gi|332982738|ref|YP_004464179.1| glycine betaine ABC transporter substrate-binding protein [Mahella
australiensis 50-1 BON]
gi|332700416|gb|AEE97357.1| Substrate-binding region of ABC-type glycine betaine transport
system [Mahella australiensis 50-1 BON]
Length = 299
Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats.
Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 34/301 (11%)
Query: 3 KILAVCLFLTTFSIS--YARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL-GYKTNI 59
K+++ L L S + + +T+ M ++++E + K
Sbjct: 5 KLISCILLLAVISGAVLGCGSSTVSKTFVVGSDNYTEQFIVGEMLAILVEGNMPDVKVER 64
Query: 60 KLLAVPVT--FRSLKNKGIDIFMGYWYPSLEKFIAP----------------YLEEGSIK 101
KL V ++ + +D + Y +L + + YL+ SIK
Sbjct: 65 KLGLNGVMVLHNAITSGEVDAAVEYTGSALMQMLQMDLITDPDEAYKVVKESYLDRWSIK 124
Query: 102 LVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMIN 160
+ Y +AV S K + G +E
Sbjct: 125 WLEPLGFNNTYAMAVRKDYAEANGLSKSS--DLAKVAENAVLGCSMQFSERPDGYPGWKE 182
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISG 220
K +++ + +NN V ++ + ++ L ++
Sbjct: 183 AYGIEFKDVVPMDS------GLMYSSIKNNEVDVISAFSTDARIPEFDLVLLEDDKKFF- 235
Query: 221 FGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
+VR+D L++ P + L+ + + A E+ + + D V + L+
Sbjct: 236 -PPYYAVPMVRTDTLEEIPGLEELINKLGGTLNDAKMAELNGKVDIDGMDPHDVAKEFLQ 294
Query: 279 T 279
Sbjct: 295 E 295
>gi|81429479|ref|YP_396480.1| putative glycine/betaine/carnitine/choline ABC transporter,
substrate binding and membrane-spanning subunits
[Lactobacillus sakei subsp. sakei 23K]
gi|78611122|emb|CAI56175.1| Putative glycine/betaine/carnitine/choline ABC transporter,
substrate binding and membrane-spanning subunits
[Lactobacillus sakei subsp. sakei 23K]
Length = 508
Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats.
Identities = 34/305 (11%), Positives = 74/305 (24%), Gaps = 38/305 (12%)
Query: 2 YKILAVCLF---LTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGY 55
KI L R T + A ++ M ++
Sbjct: 209 KKITISLAIFVGLFGLVEGVTRFQAPPTKITIAGKLGSEPEILMNMYRDLILADHPQYDV 268
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPY------------------LEE 97
F +LK IDI+ + L+ + E+
Sbjct: 269 TVKPNFGGTTFLFNALKADQIDIYPEFTGTVLQTLVKSPTKTNQNPTKTYQLAKKSLQEQ 328
Query: 98 GSIKLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
+ + Y LAV+ +K+ D+A + A
Sbjct: 329 FKMAYLPPMRYQNGYDLAVSAAFAKKYNVKTISDLAALNQSFTAGF--DPDFYHQKDGYQ 386
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ + L + + + + V + + N+ L
Sbjct: 387 GLKKTYQLQLDAKIMEPSIR-------YKAIADGKVDVVDGYTTDAEVARYNLVVLKD-- 437
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F +++ + P + + L + K + +M + + + V
Sbjct: 438 DRHFFPPYQGAPIMKESFKKAHPEVVKALNKLAGKITEDQMQQMNYQVQVKHRKARDVAH 497
Query: 275 TMLRT 279
L
Sbjct: 498 DFLVE 502
>gi|78060664|ref|YP_367239.1| ABC glycine betaine/choline-binding transporter, periplasmic ligand
binding protein [Burkholderia sp. 383]
gi|77965214|gb|ABB06595.1| ABC glycine betaine/choline-binding transporter, periplasmic ligand
binding protein [Burkholderia sp. 383]
Length = 303
Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats.
Identities = 34/283 (12%), Positives = 79/283 (27%), Gaps = 30/283 (10%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL-AVPVTFRSLKNKGIDIFM 80
T + +T+ +T+ L GY ++ + +L+N D+
Sbjct: 26 PACATKLVLGAKNFTEQYVLAEVTAQYLRSR-GYDVEVRSGLGSTLARSALENGQFDLMW 84
Query: 81 GYWYPS---------------LEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL-- 123
Y + + + + + + + Y + +
Sbjct: 85 DYTGTAALVYNKINDKLSPEEMYRRVKALDVPRGLVWLDASPLNDTYAIGLPSPLAQATG 144
Query: 124 --GIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ + K ++G++ + ++ +L +
Sbjct: 145 IRTVSQLAEHLKTDPAAKHYVFGMDAEFANRPDGLKPLLAAYGMQFSRAQLKQMDPG--- 201
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ NN + L + I L + F + VVR D L++ P
Sbjct: 202 -LVYTALHNNQLKIGLVYTTDGRVKGFGIVPLED--DKHFFPPYNATPVVRKDALERNPK 258
Query: 241 ISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRTHP 281
++ L + M K + + + + V LRTH
Sbjct: 259 LATQLNALSAALDNDGMQAMAKEVDLDGKSPRDVADAFLRTHK 301
>gi|289434706|ref|YP_003464578.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Listeria seeligeri
serovar 1/2b str. SLCC3954]
gi|289170950|emb|CBH27492.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Listeria seeligeri
serovar 1/2b str. SLCC3954]
gi|313633278|gb|EFS00141.1| BilEB [Listeria seeligeri FSL N1-067]
Length = 504
Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats.
Identities = 37/298 (12%), Positives = 87/298 (29%), Gaps = 32/298 (10%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
++ + LT I + A + M +++E+ K N+K
Sbjct: 212 TISAGILLTAAIIVVPYFVSDKKEITIAGKLGAEPEILINMYKLVIEDETDLKVNVKPNM 271
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP-----------------YLEEGSIKLVA 104
F +LK+ IDI+ + LE F+ +E + +
Sbjct: 272 GKTSFVFNALKSGDIDIYPEFTGTVLETFLKENAKTHDPEQVYKQARDGLAKEFDMTYLK 331
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKF 164
Y LAV+ K + D + K
Sbjct: 332 PMEYNNTYALAVSPEFAKKNNLE--------KISDLGPVTDQVKAGFTLEFKDRSDGYKG 383
Query: 165 SLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+ + L + ++ ++ + ++ + + L +++
Sbjct: 384 IQETYGLTFPNLKTMEPKLRYNAIKSGDINLLDAYSTDSELAQYKLKVLEDDQQLF--PP 441
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++ ++ L+K P + + L + K + +M + N + V + L+
Sbjct: 442 YQGAPLMLTETLNKYPELRKPLNKLAGKITDDEMRKMNYEVNVNGKSAYTVAKNYLQE 499
>gi|167552690|ref|ZP_02346442.1| glycine/betaine/proline transport protein [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA29]
gi|205322722|gb|EDZ10561.1| glycine/betaine/proline transport protein [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA29]
Length = 331
Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats.
Identities = 43/321 (13%), Positives = 90/321 (28%), Gaps = 37/321 (11%)
Query: 4 ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKL 61
I A + ++A D V+ + ++ T + S LE LGY +
Sbjct: 6 IFASAFATLVTASAFAADLPGKGITVQPIQSTISEETFQTLLVSRALE-KLGYTVNKLSE 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V + S+ + W P + A + + GA ++
Sbjct: 65 VDYNVGYTSIASGDATFTAVNWQPLHDDMYAAAGGDNKFYREGVFVSGAAQGYLIDKKTA 124
Query: 122 ALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ I + A + G PG I K +
Sbjct: 125 EQYNITNIAQLKDPKIAKIFDTNGDGKADMMGCSPGWGCEAVINHQNKAFDL-QKTVEVS 183
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI-------------- 218
+ A + + P ++ +W P+ ++ + ++
Sbjct: 184 HGNYAAMMADTITRFKEGKPVLYYTWTPYWVSDVMKPGKDVVWLQVPFSSLPGEQKNIDT 243
Query: 219 -------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQF 271
GF +++ V + +K P ++L +K +A N ++ K
Sbjct: 244 KLPNGANYGFPVNTMHIVANKAWAEKNPAAAKLFAIMKLPLADINAQNAMMHAGKSSEAD 303
Query: 272 V---GRTMLRTHPDLLKNWLI 289
V + H W+
Sbjct: 304 VQGHVDGWINAHQQQFDGWVK 324
>gi|326316350|ref|YP_004234022.1| glycine betaine ABC transporter substrate-binding protein
[Acidovorax avenae subsp. avenae ATCC 19860]
gi|323373186|gb|ADX45455.1| Substrate-binding region of ABC-type glycine betaine transport
system [Acidovorax avenae subsp. avenae ATCC 19860]
Length = 345
Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 37/288 (12%), Positives = 80/288 (27%), Gaps = 36/288 (12%)
Query: 36 TDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPY 94
+ T + S L + LGY IK + ++ N +W P F
Sbjct: 55 AEETFQTLLVSRAL-QKLGYDVQPIKEIEYATAHLAVANGDATFIADHWDPLHADFYKNA 113
Query: 95 LEEGSIKLVAENLQGAKYMLAVNDVGFALGIKS---------YQDIAKYKKELGAKIYGI 145
+ + A ++ + + + A + G
Sbjct: 114 GGDAKLWRKGAYSPNAVQGYLIDRKTAEQYKITHIDQLKDPKLAKLFDANGDGRADLTGC 173
Query: 146 EPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINS 205
PG I + + ++ S A + + P ++ +W P+ ++
Sbjct: 174 NPGWGCEAVIEHQLKDFGL-AGTVTHVQGSYAALMADTIARYKQGKPILYYTWTPYWVSG 232
Query: 206 D----LNIHYLPGGE-----------------EISGFGEASVYTVVRSDYLDKCPNISRL 244
++ +L + GF V + +K P ++L
Sbjct: 233 VLRPGRDVVWLQVPRSSLPGEQAGINTKLPDGKNYGFVPNVQKIVANKAFTEKNPAAAKL 292
Query: 245 LKNIKFSVALENEMMKLILNN---KQDRQFVGRTMLRTHPDLLKNWLI 289
+ ++ VA N + + D + +R H W+
Sbjct: 293 FEVMQLPVADINAQNLAMQQGQNRQADIERHVDGWIRAHQQTFDGWIA 340
>gi|116492046|ref|YP_803781.1| ABC-type proline/glycine betaine transport system, permease and
substrate binding protein [Pediococcus pentosaceus ATCC
25745]
gi|116102196|gb|ABJ67339.1| ABC-type proline/glycine betaine transport system, permease and
substrate binding protein [Pediococcus pentosaceus ATCC
25745]
Length = 509
Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 35/303 (11%), Positives = 75/303 (24%), Gaps = 36/303 (11%)
Query: 1 MYKILAVCLFLTTFSISYARD---ADSCTPVRFADTGWTDIAATTAMTSVILEE---ILG 54
+ K+L L + + + A + M ++E+
Sbjct: 206 IKKMLITLAVLVIGAAGISITRLVMPKTETITIAGKLGAEPDILINMYKDLIEQESPRTK 265
Query: 55 YKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL------------------E 96
F +LK+ IDI+ + LE + +
Sbjct: 266 VVLKQNFGETTFLFNALKSNKIDIYPEFTGTVLETLVKKAPTQKTSAHQTYLDAQRLLKQ 325
Query: 97 EGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
+ + + L V K + +E +
Sbjct: 326 QFQMDYLQPMKYQNTNALVVKKDFAKKNDLKTISDLKNIENQLKGGMTLE-FIHRKDGWV 384
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ + S +N V ++ LN+ L
Sbjct: 385 GIKKAYELD-------FPVRSMQASLRYSAIKNGQINVADAYSTDSQIKQLNLTTLKD-- 435
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F ++++ + +K P + + L + K S + EM + K+ V
Sbjct: 436 DQHVFPPYQGAPLMKTSFANKHPQVVKALNRLAGKISESEMQEMNYEVNVQKKSADVVAH 495
Query: 275 TML 277
L
Sbjct: 496 QYL 498
>gi|302024269|ref|ZP_07249480.1| ABC-type glycine betaine transport system protein [Streptococcus
suis 05HAS68]
Length = 503
Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 40/295 (13%), Positives = 86/295 (29%), Gaps = 20/295 (6%)
Query: 3 KILAVCLFLTTFSISYARDAD---SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
K + + L LT F++ + S + A + M +++E+ K I
Sbjct: 206 KTILLALLLTLFTVGASYVPMLNFSTKQLVIAGKLGAEPEILINMYKLLIEDQTDIKVEI 265
Query: 60 KL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
K + +LK+ IDI+ Y + + S + +L +
Sbjct: 266 KPNFGKTSFLYEALKSGSIDIYPEYTGTITSTLLKNSSMDLSTNSDEVYTYAKEAILEQD 325
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIE-----------PGNEGNQRILDMINNNKFSL 166
+ + + A E A+ GIE + D + N
Sbjct: 326 GLVYLAPMAFQNTYALAVTEDYAQKNGIEKISDLAKVQQTAVAGFSLEFNDREDGNIGLK 385
Query: 167 KGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV 226
+ L + + ++ + ++ + L + F
Sbjct: 386 NLYNLQLNVKTMEPALRYEAIKSGNVQIIEAYSTDSKVVTYKLKILKD--DKRLFPPYQA 443
Query: 227 YTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++ + L+K P + + L + S M + + + V R L
Sbjct: 444 APLLSKETLEKYPELEQALGVLAGNISTEEMTRMNYAVDVEGKSAEQVAREYLEQ 498
>gi|86608071|ref|YP_476833.1| quaternary amine ABC transporter periplasmic substrate-binding
protein [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86556613|gb|ABD01570.1| quaternary amine uptake ABC transporter (QAT) family, periplasmic
substrate-binding protein [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 307
Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 43/276 (15%), Positives = 83/276 (30%), Gaps = 31/276 (11%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--LLAVPVTFRSLKNKGIDIFMGY 82
P+ +T+ M ++ LE G+ K L PV L + ID++ Y
Sbjct: 36 AKPITVGSKDFTEQFILGEMYALALEAA-GFTVERKLNLGGTPVAHAGLLSGEIDLYPEY 94
Query: 83 WYPSLEKFIA----------------PYLEEGSIKLVAENLQGAKYMLAV-NDVGFALGI 125
L + Y + + + LA+ LGI
Sbjct: 95 TGTGLLTVLKLPSSGDPAEVYATVAREYESQFQLIWLDPAPLNNTQALAMTRARAAELGI 154
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
+ D+ K + G + + ++A + +
Sbjct: 155 ATISDMVA--KAGELVMIGPPEFQAREDGLPGIQAVYGNFR-----LKAYKAVDPGLRYQ 207
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
N V +++ + ++ L + F V VVR D L+ P I+ L
Sbjct: 208 GLVNGEADVAVAFGTDGEIAAFDLVLLED--DKQLFPPYQVAPVVRKDTLEANPGIAAAL 265
Query: 246 KNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+ + + + + N+++ V RT L
Sbjct: 266 NALSPLLTDEVMQRLNYEVSGNRKEPAEVARTFLVE 301
>gi|296330440|ref|ZP_06872920.1| choline ABC transporter (choline-binding lipoprotein) [Bacillus
subtilis subsp. spizizenii ATCC 6633]
gi|305675986|ref|YP_003867658.1| choline ABC transporter choline-binding lipoprotein [Bacillus
subtilis subsp. spizizenii str. W23]
gi|296152443|gb|EFG93312.1| choline ABC transporter (choline-binding lipoprotein) [Bacillus
subtilis subsp. spizizenii ATCC 6633]
gi|305414230|gb|ADM39349.1| choline ABC transporter (choline-binding lipoprotein) [Bacillus
subtilis subsp. spizizenii str. W23]
Length = 306
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 32/299 (10%), Positives = 76/299 (25%), Gaps = 25/299 (8%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M + + + A S ++ ++ +M ++E KT
Sbjct: 9 MIGLTLAAMLPLSGCSLPGLSAASDQTIKIGAQSMSESEIIASMLGQLIEHHTDLKTTTI 68
Query: 61 LLAVPVTFRSLK--NKGIDIFMGYWY---------------PSLEKFIAPYLEEGSIKLV 103
+ N+ IDI + P + + L
Sbjct: 69 KNLGSNAVQQQALMNREIDIAATRYTGDALTGTLRMEPEKDPEKALALTQREFKKRYDLK 128
Query: 104 AENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK 163
+ G A ++++ KK G++ +
Sbjct: 129 WYDSYGFDNTYAFTVSKKLADQYHLENVSDVKKWAPQLKLGVDNYWMKLRGNGYQDFTKT 188
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+ + + + ++ + L++ + L + F
Sbjct: 189 YGMTF----SGTYPMQIGLVYDAVKSGKMDIVLAYSTDGRIKSYGLKMLKD--DKQFFPP 242
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
VV L + P + ++ + K A E+ + N ++ V + L H
Sbjct: 243 YDCSPVVPEQVLKEHPELEGTIQKMIGKIDTATMQELNYEVDGNLKEPSVVAKEYLEKH 301
>gi|229823996|ref|ZP_04450065.1| hypothetical protein GCWU000282_01300 [Catonella morbi ATCC 51271]
gi|229786350|gb|EEP22464.1| hypothetical protein GCWU000282_01300 [Catonella morbi ATCC 51271]
Length = 505
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 31/303 (10%), Positives = 78/303 (25%), Gaps = 38/303 (12%)
Query: 2 YKILAVCLFLTTFSISYARDA----DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
+L L +S + A + + ++E+ +
Sbjct: 207 KTLLLSFLTTAVLVVSSFAQPYFLPMGNNKLIIAGKLGAEPDILIHLYKELIEQDSHLQV 266
Query: 58 NIKL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPY------------------LEE 97
+K + +LK IDI+ + + ++
Sbjct: 267 EVKPNFGKTSFLYEALKAGSIDIYPEFSGTITASLLTNPPQLANDQEAVYEAARDGIYQQ 326
Query: 98 GSIKLVAENLQGAKYMLAVND-VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
+ + Y +AV + G+++ D+ K + +
Sbjct: 327 DKLIYLKPMAYQNTYAIAVKEAYAMEHGLETISDLKKVESTART---------GFSLEFN 377
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
D + K + L + + + + V + + L
Sbjct: 378 DRPDGKKGLESLYGLKLNIQTMEPALRYQALEQDKLDVIEVYSTDSQIIKYGLKLLQD-- 435
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F ++R + L + P + +L + K + M + + + V
Sbjct: 436 DKHLFPPYQGAPLLREETLKQHPELEGILNKLHKKITATEMATMNYQVDVEGKSAKEVAH 495
Query: 275 TML 277
L
Sbjct: 496 DFL 498
>gi|228474823|ref|ZP_04059554.1| glycine betaine/carnitine/choline-binding protein [Staphylococcus
hominis SK119]
gi|228271486|gb|EEK12854.1| glycine betaine/carnitine/choline-binding protein [Staphylococcus
hominis SK119]
Length = 312
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 27/298 (9%), Positives = 80/298 (26%), Gaps = 27/298 (9%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI---- 59
+ + L+ + D++S V+ T ++ + +++E +
Sbjct: 11 LALSLVVLSGCGLPGLGDSNSKDSVKITSTETSETKIMANIEKLMIEHYTNGEVKPSIIG 70
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL---------------EEGSIKLVA 104
L + + +L ++ + + + +
Sbjct: 71 NLGSSIIQHNALMRGDANMSAVRYTGTELTSVLDAPPTKDTKKAMDESQRLFKEKYDQKY 130
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKF 164
N G + A + ++ KK G++ +
Sbjct: 131 YNSFGFENTYAFMVTQEVADKYHLEKVSDLKKYKDELSLGMDTQWMNRAGDGYPAFQKDY 190
Query: 165 SLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEA 224
K +++ + +N V + + + N+ L + S F
Sbjct: 191 GFKF----KSARPMQIGLVYDALKNKKLDVAVGYSTDGRIAAYNLKILKD--DRSFFPPY 244
Query: 225 SVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+V + + + P I + L + S ++ ++ + ++ H
Sbjct: 245 DGSPLVTEELIKEHPEIDKALTKLEDTVSTKEMQKLNYEADGKGKEPAVIAEEFVKKH 302
>gi|116493636|ref|YP_805370.1| periplasmic glycine betaine/choline-binding (lipo)protein of an
ABC-type transport system (osmoprotectant binding
protein) [Lactobacillus casei ATCC 334]
gi|227533458|ref|ZP_03963507.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, binding protein [Lactobacillus
paracasei subsp. paracasei ATCC 25302]
gi|239630874|ref|ZP_04673905.1| amino acid ABC transporter [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|301065198|ref|YP_003787221.1| periplasmic glycine betaine/choline-binding (lipo)protein of an
ABC-type transport system (osmoprotectant binding
protein) [Lactobacillus casei str. Zhang]
gi|116103786|gb|ABJ68928.1| Periplasmic glycine betaine/choline-binding (lipo)protein of an
ABC-type transport system (osmoprotectant binding
protein) [Lactobacillus casei ATCC 334]
gi|227188908|gb|EEI68975.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, binding protein [Lactobacillus
paracasei subsp. paracasei ATCC 25302]
gi|239527157|gb|EEQ66158.1| amino acid ABC transporter [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|300437605|gb|ADK17371.1| Periplasmic glycine betaine/choline-binding (lipo)protein of an
ABC-type transport system (osmoprotectant binding
protein) [Lactobacillus casei str. Zhang]
gi|327380919|gb|AEA52395.1| ABC-type transport system, permease; putative
betaine/proline/choline transporter; putative membrane
protein [Lactobacillus casei LC2W]
gi|327384091|gb|AEA55565.1| ABC-type transport system, permease; putative
betaine/proline/choline transporter; putative membrane
protein [Lactobacillus casei BD-II]
Length = 309
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 39/303 (12%), Positives = 79/303 (26%), Gaps = 30/303 (9%)
Query: 2 YKILAVCLFLTTFSISYARD-----ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
K+L + + + + VR A T+ + + ++ LGYK
Sbjct: 5 RKMLLSLFLIPVLLLGGCGFPGLGGSGNDGTVRIASQTSTESQIMANIIAELINHELGYK 64
Query: 57 TNIKL--LAVPVTFRSLKNKGIDIFMGYWY---------------PSLEKFIAPYLEEGS 99
T + + V +++ DI + P+ I +
Sbjct: 65 TTLVNNLGSGTVVHQAMIRNDADISATRYTGTDITGTLGMNPVKDPAEATAIVKREFKKR 124
Query: 100 IKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI 159
G A I+ KK G++ +
Sbjct: 125 YDQTWYPSYGFSDTYAFMVTQQEAKKDGLSTISDLKKVASRYNAGVDSSWMNRKGDGYSD 184
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
+ R+ + N L + N+ L ++
Sbjct: 185 FTKMYGFDFKRVYP----MQIGLVYDAVEANKMQTVLGYSTDGRIRSYNLKVLKDDKKFF 240
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
VV + +L K P + LL + K ++ E+ + + + V + L
Sbjct: 241 --PPYQCSLVVNNSFLKKYPKLKPLLHRLDGKINLKTMQELNYQVDDQLLEPNVVAQKFL 298
Query: 278 RTH 280
H
Sbjct: 299 AKH 301
>gi|45861252|gb|AAS78508.1| solute-binding periplasmic protein [Yersinia enterocolitica]
Length = 319
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 41/321 (12%), Positives = 91/321 (28%), Gaps = 37/321 (11%)
Query: 1 MYKI---LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M K + L + +S A V+ + ++ T++ + LE LGY
Sbjct: 1 MRKTGIWVLALTTLISTQLSAAELPGKGITVQPLQSTISEETFQTSLVNKALE-KLGYDV 59
Query: 58 N-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
K + V + S+ W P A + ++G +
Sbjct: 60 QPTKEVDYNVAYSSIAAGDATYLAVNWEPLHNDQYAAAGGDAKFYRQGNFIEGLAQGYLI 119
Query: 117 NDVGFALGIKSYQD---------IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
+ + + + + A + G PG I I S
Sbjct: 120 DKKTADKYHITNIEQLKDPKIAKLFDANNDGKADLTGCNPGWGCEAPINHQIQAYGLSDT 179
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP----INSDLNIHYLPGGEE------ 217
+ + A + + P ++ +W P+ + ++ +L
Sbjct: 180 -VTHNQGNYAAMIADTITRYKEGKPILYYTWTPYWVSDVLVPGRDVVWLQVPFSSLPDKT 238
Query: 218 ---------ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI---LNN 265
GF + ++ V + + P ++L +K S+ N + ++
Sbjct: 239 IDTQLSNGANYGFPPSVMHIVANKKWAEANPAAAKLFSIMKLSINDVNAQNMRMHAGESS 298
Query: 266 KQDRQFVGRTMLRTHPDLLKN 286
D + ++ H
Sbjct: 299 DADIERHVNGWIQAHQSTFDG 319
>gi|328951027|ref|YP_004368362.1| ABC-type glycine betaine transport, periplasmic subunit
[Marinithermus hydrothermalis DSM 14884]
gi|328451351|gb|AEB12252.1| ABC-type glycine betaine transport, periplasmic subunit
[Marinithermus hydrothermalis DSM 14884]
Length = 304
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 38/306 (12%), Positives = 84/306 (27%), Gaps = 34/306 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K + + L + A+ V +T+ M + LE G+K N K
Sbjct: 1 MRKTIGLLLLGFMLGAALAQ----KGTVTIGSKNFTEQFILGEMMAQALEAQ-GFKVNRK 55
Query: 61 L--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP---------------------YLEE 97
V +L+ +D++ Y ++ F + EE
Sbjct: 56 FGLGGSTVAREALEAGELDMYPEYTGTAITVFFSKNAELQALAHDAEKGYELLKQVDAEE 115
Query: 98 GSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRI 155
++ + + LAV + + + + +
Sbjct: 116 NNLHWLCPAPANNTWALAVRRDFAEANNVFTHEDLARYLAEGGQVTLAANPEFVNRSDAL 175
Query: 156 LDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG 215
+ + + + + + R + + + ++ L
Sbjct: 176 EAFERTYGYKIPRENVRVLGQGSYVTAQAVANRAGGVNLGVVYGTDGTIGAFDLVVLKDT 235
Query: 216 EEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVG 273
+ VVR + L++ P I LL I A + + + + + V
Sbjct: 236 KGA--QVVFRPTPVVRGELLEQHPEIEALLCRIFKTLDDATLARLNGRVDVDGERPEDVA 293
Query: 274 RTMLRT 279
R L+
Sbjct: 294 RDYLKE 299
>gi|172035039|ref|YP_001801540.1| quaternary amine ABC transporter periplasmic substrate-binding
protein [Cyanothece sp. ATCC 51142]
gi|171696493|gb|ACB49474.1| putative quaternary amine uptake ABC transporter (QAT) family,
periplasmic substrate-binding protein [Cyanothece sp.
ATCC 51142]
Length = 512
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 33/297 (11%), Positives = 89/297 (29%), Gaps = 30/297 (10%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
+ + F++ I ++ + +T+ M + +E + +
Sbjct: 221 FIFLFAFVSLIFIVFSLINKPQKQIVIGSKNFTEQIILGEMIAQQIENNSNLTVDRRFNL 280
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP----------------YLEEGSIKLVAE 105
+ ++K + ID ++ Y + + Y EE ++++
Sbjct: 281 GGTFICHEAVKAQEIDGYVEYTGTAFTAILERKPVSNPNLVYGEIKEVYNEEFKLEVMPS 340
Query: 106 NLQGAKYMLAVN-DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKF 164
Y + + + I++ D+A+Y E A +
Sbjct: 341 LGFENTYAILIRGEDAKQYNIETISDVAQYTPEWTAGFSY--EFLAREDGYSGLSKTYDL 398
Query: 165 SLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEA 224
+ + + + R + + S L+++ L +
Sbjct: 399 -----QFAQQPKTMELGLMYRALAEKNVDLVAGNSTDGLISVLDLYMLKDNKNYF--PPY 451
Query: 225 SVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
V + L + PN+S +++ + + S ++ L+ + +Q V L
Sbjct: 452 EAVPVFNQETLKEHPNLSPIIQQLSGQISSQEMQQLNYLVDHERQSVNKVVEDFLNE 508
>gi|299529134|ref|ZP_07042582.1| glycine betaine transporter periplasmic subunit [Comamonas
testosteroni S44]
gi|298722890|gb|EFI63799.1| glycine betaine transporter periplasmic subunit [Comamonas
testosteroni S44]
Length = 348
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 36/286 (12%), Positives = 75/286 (26%), Gaps = 34/286 (11%)
Query: 36 TDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPY 94
+ T + S LE LGY+ +K L ++ +W P F
Sbjct: 58 DEEMFQTLLVSRALE-KLGYRVQPVKSLENGTQHVAVAQGDATFTATHWMPLHRAFYENN 116
Query: 95 LEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD---------IAKYKKELGAKIYGI 145
+ + + A ++ + + + A + G
Sbjct: 117 GADRAFYRAGTYSRNAVQGYLIDKATAEKYKITSITQLKDPKLAALFDTDGDGKADLTGC 176
Query: 146 EPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPIN- 204
PG I + + + A + ++ P ++ W P +N
Sbjct: 177 NPGWGCELAINKHLKGLDLE-SSITHRQGNYQALIADTITRYKSGKPILYYVWTPFWVNT 235
Query: 205 ------------------SDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLK 246
+ + GF Y + + +K P ++L
Sbjct: 236 VLRPGKEVSWLEVPNVPGAQGEDQTQLPNGKNYGFKLNQQYILANKAWAEKNPAAAKLFA 295
Query: 247 NIKFSVALENEMMKLILNNKQDRQFVGRT---MLRTHPDLLKNWLI 289
++ S+ N + + V R ++ H WL
Sbjct: 296 VMQLSIEDINAQNMRMRQGESSSADVSRHVDGWIKAHQQTFDGWLE 341
>gi|238759168|ref|ZP_04620336.1| Osmoprotectant transport protein OusBX [Yersinia aldovae ATCC
35236]
gi|238702584|gb|EEP95133.1| Osmoprotectant transport protein OusBX [Yersinia aldovae ATCC
35236]
Length = 329
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 39/316 (12%), Positives = 89/316 (28%), Gaps = 34/316 (10%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAV 64
L + +S A V+ + ++ TA+ + LE LGY K +
Sbjct: 9 LALTTLVSTQLSAAELPGKGVTVQALQSTISEETFQTALVNKALE-KLGYDIQPTKEVDY 67
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
V + ++ W P + ++G ++
Sbjct: 68 NVAYSTIAAGDATYLAVNWVPLHNDQYKAAGGDAKFYRQGNYIEGLAQGYLIDKKTADKY 127
Query: 125 IKSYQD---------IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
+ + + + A + G PG I I S + +
Sbjct: 128 HITNIEQLKDPKIAKLFDANNDGKADLTGCNPGWGCEAPINHQIKAYGLSDT-VTHNQGN 186
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHP----INSDLNIHYLPGGEE-------------- 217
A + + P ++ +W P+ + ++ +L
Sbjct: 187 YAAMLADTITRYKEGKPILYYTWTPYWVSDVLVPGRDVVWLQVPFSSLPDATIDTKLANG 246
Query: 218 -ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI---LNNKQDRQFVG 273
GF + ++ V + + P ++L +K S+ N + ++ D +
Sbjct: 247 ANYGFPPSIMHIVANKKWAEANPAAAKLFSIMKLSINDVNAQNMRMHAGESSDADIERHV 306
Query: 274 RTMLRTHPDLLKNWLI 289
++ H W+
Sbjct: 307 NGWIQGHQTTFDGWVK 322
>gi|168464069|ref|ZP_02697986.1| glycine betaine-binding periplasmic protein [Salmonella enterica
subsp. enterica serovar Newport str. SL317]
gi|195633391|gb|EDX51805.1| glycine betaine-binding periplasmic protein [Salmonella enterica
subsp. enterica serovar Newport str. SL317]
Length = 331
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 43/321 (13%), Positives = 89/321 (27%), Gaps = 37/321 (11%)
Query: 4 ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKL 61
I A + ++A D V+ + ++ T + S LE LGY
Sbjct: 6 IFASAFATLVTASAFAADLPGKGITVQPIQSTISEETFQTLLVSRALE-KLGYTVNKPSE 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V + S+ + W P + A + + GA ++
Sbjct: 65 VDYNVGYTSIASGDATFTAVNWQPLHDDMYAAAGGDKKFYREGVFVSGAAQGYLIDKKTA 124
Query: 122 ALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ I + A + G PG I K +
Sbjct: 125 EQYNITNIAQLKDPKIAKIFDTNGDGKADMMGCSPGWGCEAVINHQNKAFDL-QKTVEVS 183
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI-------------- 218
+ A + + P ++ +W P+ ++ + ++
Sbjct: 184 HGNYAAMMADTITRFKEGKPVLYYTWTPYWVSDVMKPGKDVVWLQVPFSSLPGEQKNIDT 243
Query: 219 -------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQF 271
GF +++ V + +K P ++L +K +A N ++ K
Sbjct: 244 KLPNGANYGFPVNTMHIVANKAWAEKNPAAAKLFAIMKLPLADINAQNAMMNAGKSSEAD 303
Query: 272 V---GRTMLRTHPDLLKNWLI 289
V + H W+
Sbjct: 304 VQGHVDGWINAHQQQFDGWVK 324
>gi|83814600|ref|YP_444578.1| ABC transporter, substrate-binding protein [Salinibacter ruber DSM
13855]
gi|83755994|gb|ABC44107.1| ABC transporter, substrate-binding protein [Salinibacter ruber DSM
13855]
Length = 317
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 54/286 (18%), Positives = 104/286 (36%), Gaps = 11/286 (3%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-LAVPVTFRSLKNKGIDIF 79
D + W + A T + I+E + +++ + F S+ D F
Sbjct: 21 SQDVSRKMNMVTVNWIEGMAFTYVQEQIMENQYDMEVDVREVGGGGIAFSSVAEGDRDYF 80
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
W P+ + +G+ + +G L V + I S ++ Y+ ELG
Sbjct: 81 NEAWLPTTHQDPWSK-AQGNAAKLGYTYKGTSVGLTVPAY---MDISSVSELENYRNELG 136
Query: 140 AKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWE 199
+I GIE G N + ++ NN + + ++ +S A++ + N P V W
Sbjct: 137 GEINGIESGAAVNDQTRKILENNGLNDEF-SVVASSGPATWQALENAVNNEQPIVVTGWY 195
Query: 200 PHPINSDLNIHYLPG---GEEISGFGEASVYTVVRSDYLDKCP-NISRLLKNIKFSVALE 255
PH ++ YL G G+ V+ +V S++ ++ P + LK + +
Sbjct: 196 PHWKWGSFDLKYLEGAQTGQSPVFGDPEDVFKIVDSEFTEEFPKEVVCFLKVSEVTDEEI 255
Query: 256 NEMMKLILNNK-QDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPS 300
+M N ++ + H + + W D S
Sbjct: 256 ESLMGSFRNRGDMSKREAASQWIENHSEDVNAWTKQAEECAASDGS 301
>gi|228475293|ref|ZP_04060017.1| choline transporter [Staphylococcus hominis SK119]
gi|228270669|gb|EEK12083.1| choline transporter [Staphylococcus hominis SK119]
Length = 504
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 33/275 (12%), Positives = 79/275 (28%), Gaps = 32/275 (11%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEILG--YKTNIKLLAVPVTFRSLKNKGIDIFMGYWY 84
+ A ++ + T M +++EE + F +LK+ ID ++ +
Sbjct: 235 TITMAGKLGSEPSIITNMYKILIEEETHDTVNVKSGMGKTSFLFNALKSDDIDGYLEFTG 294
Query: 85 PSLEKFIAP-----------------YLEEGSIKLVAENLQGAKYMLAVNDVGFALG-IK 126
L + ++ + ++ Y LAV ++
Sbjct: 295 TVLGELTKEDLKSKKEADVYHQAKASLEKKYDMTMLKPMKYNNTYALAVKRDFAKQYNLQ 354
Query: 127 SYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRD 186
S D+ K + +L + + + +L + +E
Sbjct: 355 SIGDLRKVQGQLKPGFTM--EFKDRDDGYKAVAKKYNLNLSNIKQMEPKLR------YTA 406
Query: 187 QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLK 246
+ ++ ++ L + F + + +L + P I + L
Sbjct: 407 IEKGDINLIDAYSTDAELKQYDMVVLKD--DKHVFPPYQGAPMFKEKFLKEHPEIKKALN 464
Query: 247 NI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+ K + EM + +D V + L
Sbjct: 465 QLSNKITDEQMQEMNYKVTVKNEDPYKVAKQYLEK 499
>gi|311069898|ref|YP_003974821.1| periplasmic transport protein OpuCC [Bacillus atrophaeus 1942]
gi|310870415|gb|ADP33890.1| periplasmic transport protein OpuCC [Bacillus atrophaeus 1942]
Length = 305
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 33/280 (11%), Positives = 73/280 (26%), Gaps = 27/280 (9%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--LLAVPVTFRSLKNKGIDI 78
S ++ T+ + + ++E T + L + V +++ IDI
Sbjct: 29 SGASDQTIKIGAQSITESEILANIIAQLIEHNTDLNTALIKNLGSNYVQQQAMVGGDIDI 88
Query: 79 FMGYW---------------YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+ P I E K + G + A
Sbjct: 89 SATRYSGTDLTSTLGMEAEKDPKKALDIVQKEFEKRFKYRWFDSYGFENTYAFTVSKELA 148
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA-SELASFSQ 182
++ KK G++ + + K + + +
Sbjct: 149 EKDHLNTVSDIKKNADKYKLGVDNAWLKRKG-----DGYKGFVSTYGFEFGTTYPMQIGL 203
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ +N L++ ++ L + F VV L + P +
Sbjct: 204 VYDAVKNGKMDAVLAYSTDGRIKAYDLKILKD--DKQFFPPYDCSPVVPEKVLKQHPELE 261
Query: 243 RLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
LL + + E+ + ++ V + L H
Sbjct: 262 GLLNKLIGQIDTETMQELNYEVDGKLKEPSVVAKEFLEKH 301
>gi|167041908|gb|ABZ06647.1| putative Substrate binding domain of ABC-type glycine betaine
transport system [uncultured marine microorganism
HF4000_133I24]
Length = 315
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 42/295 (14%), Positives = 88/295 (29%), Gaps = 25/295 (8%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+ K L V ++ A ADS P R W+ + ILE+ +G
Sbjct: 6 IIKGLVVAAIISA-FSFAAYAADSKKPTRIPVHNWSSQIVMAYVIGGILED-MGGNVEYV 63
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAEN----LQGAKYMLAV 116
+ S++ IDI W + K ++G + ++ L+ Y V
Sbjct: 64 PADSQKVYESIRIGDIDISQEVWQSAFGKSFDAARDKGGLLDWGDHVARSLEDMGYPNWV 123
Query: 117 NDVGFALGIKSYQDIA--KYKKELGAKIYGIEPGN------EGNQRILDMINNNKFSLKG 168
+ G G+ S++ + K G + + +
Sbjct: 124 EEKGLCPGLPSWEALKAEACWKNFVTPDSGGKGRWLEGPQTWHQDLMPQRMTALGLDANW 183
Query: 169 FRLIEASELASFSQIRRDQRNNIPAVFLSWEP-----------HPINSDLNIHYLPGGEE 217
S A ++++ ++ + +W P GG+
Sbjct: 184 VVKFAGSADALWAELAAAEKEGRGTIIFNWTPNFTDGAGFTFIDFPPYTDGCRPADGGDG 243
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
G + + V + P+ +++ K + F+ M + +K +
Sbjct: 244 KCGSPDGYLKKAVNEKWTKTHPDAAKMFKKLAFTTGQIGAMAAYVDVDKMTHEDA 298
>gi|323701554|ref|ZP_08113227.1| Substrate-binding region of ABC-type glycine betaine transport
system [Desulfotomaculum nigrificans DSM 574]
gi|323533563|gb|EGB23429.1| Substrate-binding region of ABC-type glycine betaine transport
system [Desulfotomaculum nigrificans DSM 574]
Length = 298
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 30/165 (18%), Positives = 66/165 (40%), Gaps = 4/165 (2%)
Query: 133 KYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIP 192
K +++ KI GI+PG + + + + L+E S A + +++ P
Sbjct: 36 KVGEQVNYKIIGIDPGAGLMKATDKALQEYELKD--WELVEGSSAAMTAALKKAYDKKEP 93
Query: 193 AVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSV 252
+ W PH + + ++ YL + I G EA ++TVVR + P+ L +
Sbjct: 94 IIVTGWTPHWMFAKFDLKYLKDPKGIFGEAEA-IHTVVRKGLKNDQPSAYAFLDKFYWEP 152
Query: 253 ALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQ 297
+ +M + ++ + + + W+ G+ + +
Sbjct: 153 SDMESVMMAVA-EGKEPARAAAEWVAKNEAKVAKWVEGIKPVNNK 196
Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 1/106 (0%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMG 81
+ + A W A+T + + +LE+ LGY+ + + + + +D +
Sbjct: 192 PVNNKKITLAYVAWDSEIASTYVVANVLEQKLGYQVELSQVEAGPMWAGVAGGDVDGMVA 251
Query: 82 YWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKS 127
W P+ EG + + NL+G K L V I+
Sbjct: 252 AWLPTTHADYYKK-FEGKFEDLGPNLEGTKLGLVVPKYMEIDSIED 296
>gi|330937815|gb|EGH41661.1| glycine betaine/choline ABC transporter periplasmic
substrate-binding protein [Pseudomonas syringae pv. pisi
str. 1704B]
Length = 303
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 39/302 (12%), Positives = 89/302 (29%), Gaps = 32/302 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M +I A +R +T+ +T+ L Y I
Sbjct: 1 MKRI--CLFLGFALLFPALAQAAEKPLLRVGARVFTEQTILAELTAQYLRTK-NYDVQIT 57
Query: 61 LL-AVPVTFRSLKNKGIDIFMGYWYPSLEKF---------------IAPYLEEGSIKLVA 104
+ + ++ +D+ Y SL + + + + ++
Sbjct: 58 GGLGSNLARSAQESGQLDLLWEYTGVSLVSYNHIDEKLDSAQTYARVKEVDAKKGLIWLS 117
Query: 105 ENLQGAKYMLAVNDVGFALG--IKSYQDIAKYKKELGAKIYGIE---PGNEGNQRILDMI 159
+ Y LA+ + + D+AK K+ + + + + ++ M+
Sbjct: 118 PSKFNNTYALALPQKIADKYPQVNTMSDLAKVFKDEAKEGHLVALDTEFANRSDGLVGMV 177
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
+ +L + + +N L + + + L +
Sbjct: 178 KHYDMNLGRENTRQMDSG----LVYTALQNGQVFAGLVYTTDGRLNAFKLKVLQD--DKH 231
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
F + + V+R +YLDK P+I LK + ++ + + V L
Sbjct: 232 YFPDYTAAPVIRQEYLDKHPDIETSLKPLADLLDNQTMIDLNARVDVGHESPSAVAADFL 291
Query: 278 RT 279
R
Sbjct: 292 RQ 293
>gi|167031929|ref|YP_001667160.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas putida GB-1]
gi|166858417|gb|ABY96824.1| Substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas putida GB-1]
Length = 304
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 36/285 (12%), Positives = 80/285 (28%), Gaps = 31/285 (10%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVT-FRSLKNKGIDIF 79
A +R +T+ +T+ L G+ + ++ + +D+
Sbjct: 20 QAAEKPLIRIGARVFTEQTVLAEITAQYLRAN-GFDVRVTTGLGSNIARQAQETGQLDLM 78
Query: 80 MGYWYPSLEKF----------------IAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
Y SL + + + + + + Y L +
Sbjct: 79 WEYTGVSLVSYNHIDERMPSAEATFARVKALDAKKDLIWLTPSKFSNTYALGLPKQVADA 138
Query: 124 G-----IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
I + + + + + ++ + L + +
Sbjct: 139 YPQVNTISDLNQVLRDESQRTHLVALDTEFANRPDGLVGLREMYGLPLDRRNIRQMDGG- 197
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+ RNN L + + ++ L + F + + VVR LD
Sbjct: 198 ---LVYTAMRNNQVFAGLVYTTDGRLNAFDLKLLED--DKHYFPDYTAAPVVRKAVLDAN 252
Query: 239 PNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTHP 281
P + LLK + + ++ + Q+ V T LR HP
Sbjct: 253 PQLVALLKPLAEQLDDETMRQLNAKVDVEHQNPTAVAATFLREHP 297
>gi|70725609|ref|YP_252523.1| glycine betaine/carnitine/choline ABC transporter opuCC
[Staphylococcus haemolyticus JCSC1435]
gi|68446333|dbj|BAE03917.1| glycine betaine/carnitine/choline ABC transporter opuCC
[Staphylococcus haemolyticus JCSC1435]
Length = 315
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 27/308 (8%), Positives = 80/308 (25%), Gaps = 34/308 (11%)
Query: 1 MYKI-------LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL 53
M K+ + L+ S+ D D V+ T ++ + +++E
Sbjct: 1 MKKLKLTFILLAMSLIVLSGCSLPGLGDGDGKDSVKITATETSETKIMANIEKLMIEHYT 60
Query: 54 GYKTNIKL----LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------- 96
K + + + +L+ +++ + + +
Sbjct: 61 NGKIKPTIVGNLGSSIIQHNALQRGDVNMSAVRYTGTELTSVLDAPPTKDTKKAMSESQR 120
Query: 97 --EGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQR 154
+ + G + A + ++ KK G++
Sbjct: 121 LFKEKYNQKYYDSFGFENTYAFMVTKEVAEKYHLEKVSDLKKYKDELRLGMDTQWMNRAG 180
Query: 155 ILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPG 214
++ K ++ + +N V + + + ++ L
Sbjct: 181 DGYPAFQKEYGFKF----ASARPMQIGLVYDALKNKKLDVAVGYSTDGRIAAYDLKILKD 236
Query: 215 GEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFV 272
+ + + P I + LK ++ S ++ ++ +
Sbjct: 237 DRKFF--PPYDGSPLATEKLIKDHPEIDKALKKLQGQISTKEMQKLNYEADGKGKEPAVI 294
Query: 273 GRTMLRTH 280
L+ H
Sbjct: 295 AEEYLKKH 302
>gi|322831481|ref|YP_004211508.1| Substrate-binding region of ABC-type glycine betaine transport
system [Rahnella sp. Y9602]
gi|321166682|gb|ADW72381.1| Substrate-binding region of ABC-type glycine betaine transport
system [Rahnella sp. Y9602]
Length = 336
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 42/336 (12%), Positives = 100/336 (29%), Gaps = 44/336 (13%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK-L 61
K L + + + T + A V+ + + A T + + LE LGY
Sbjct: 11 KALILAVSMATPAAFAADLPGKGVVVKPLQSTIAEEAFQTELVNRALE-KLGYDVQQTGE 69
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V + ++ + W P + + + GA ++
Sbjct: 70 VDYNVAYTAIASGDSTYMAVNWEPLQKDMYNTAGGDQKFYRQGTYISGAAQGYLIDKKTA 129
Query: 122 ALGIKSY---------QDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ + A + G PG Q I I S
Sbjct: 130 DKYHIHDLSQLKDPKIAKLFDADGDGKADMAGCNPGWVCGQVINTQIKAYGLS-NTVTQN 188
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDL----NIHYLPGGE------------ 216
E + A + ++ P ++ +W P+ +++++ ++ +L
Sbjct: 189 EGNYSAIIADTLTRFKSGKPVLYFTWTPYWVSNEMKPGKDVVWLTVPFSANPGSQKDLDT 248
Query: 217 -----EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQF 271
+ GF + + V + +K P ++L +K +A N + + +
Sbjct: 249 TLPNGKNYGFPVNNEHIVANKAWAEKNPVAAKLFAIMKLPLADVNAQNLRMHEGESSSED 308
Query: 272 V---GRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLE 304
+ ++ H W+ ++ + +
Sbjct: 309 IQQHVDGWIKAHQATFDGWI--------KEAAAAAK 336
>gi|191636888|ref|YP_001986054.1| Putative ABC transporter; osmoprotectant-binding protein, glycine
betaine/carnitine/choline ABC transporter [Lactobacillus
casei BL23]
gi|190711190|emb|CAQ65196.1| Putative ABC transporter; osmoprotectant-binding protein, glycine
betaine/carnitine/choline ABC transporter [Lactobacillus
casei BL23]
Length = 303
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 37/278 (13%), Positives = 74/278 (26%), Gaps = 25/278 (8%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGIDIF 79
+ + VR A T+ + + ++ LGYKT + + V +++ DI
Sbjct: 24 SGNDGTVRIASQTSTESQIMANIIAELINHELGYKTTLVNNLGSGTVVHQAMIRNDADIS 83
Query: 80 MGYWY---------------PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
+ P+ I + G A
Sbjct: 84 ATRYTGTDITGTLGMNPVKDPAEATAIVKREFKKRYDQTWYPSYGFSDTYAFMVTQQEAK 143
Query: 125 IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
I+ KK G++ + + R+ +
Sbjct: 144 KDGLSTISDLKKVASRYNAGVDSSWMNRKGDGYSDFTKMYGFDFKRVYP----MQIGLVY 199
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
N L + N+ L ++ VV + +L K P + L
Sbjct: 200 DAVEANKMQTVLGYSTDGRIRSYNLKVLKDDKKFF--PPYQCSLVVNNSFLKKYPKLKPL 257
Query: 245 LKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
L + K ++ E+ + + + V + L H
Sbjct: 258 LHRLDGKINLKTMQELNYQVDDQLLEPNVVAQKFLAKH 295
>gi|332704984|ref|ZP_08425069.1| ABC-type proline/glycine betaine transport system, permease
component [Lyngbya majuscula 3L]
gi|332356161|gb|EGJ35616.1| ABC-type proline/glycine betaine transport system, permease
component [Lyngbya majuscula 3L]
Length = 678
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 38/312 (12%), Positives = 80/312 (25%), Gaps = 38/312 (12%)
Query: 14 FSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRSLK 72
+ S VR D T + + LE LGY+ K L + +L
Sbjct: 358 LTSSEIALPGKGVKVRSTYGYLADSQFMTHIVNTALE-KLGYEIEKPKQLQPTTSHIALG 416
Query: 73 NKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSY---- 128
N +D +W +F + ++ V + ++ +
Sbjct: 417 NNDLDFTANHWEKLHTEFFEKNGGDKKLERVGVIVSDLLQGYQIDKKTAEKYKITNLEQL 476
Query: 129 -----QDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
+ + A + G PG I ++ + +
Sbjct: 477 KDPKIAKLFDSDGDGKANLAGCIPGWGCELVIEHHLDAYGLRDT-VEHDQGEYSVLIANS 535
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNI-----------------------HYLPGGEEISG 220
+ P ++ +W P + + L + + G
Sbjct: 536 IARYKQGKPVLYYTWTPLWLATVLKPGEDVVWLEVAQTNLPEAQKGLTEKHTSIDGKNLG 595
Query: 221 FGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV---GRTML 277
F + V +L P L + K + N + + + +
Sbjct: 596 FAVDQIRFVANKKFLATNPAARDLFERFKMPIEELNAESLRAKKGEDSPADIRRHSQEWI 655
Query: 278 RTHPDLLKNWLI 289
+ + L +WL
Sbjct: 656 KKNQKLFDSWLE 667
>gi|56964795|ref|YP_176526.1| proline/glycine betaine ABC transporter substrate-binding protein
[Bacillus clausii KSM-K16]
gi|56911038|dbj|BAD65565.1| proline/glycine betaine ABC transporter substrate-binding protein
[Bacillus clausii KSM-K16]
Length = 307
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 34/304 (11%), Positives = 89/304 (29%), Gaps = 31/304 (10%)
Query: 1 MY--KILAVCLFLTTFSISYAR---DADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M K + + S +R ++ + ++++EE
Sbjct: 1 MKPTKTIIAFCLSGLILTGCSLPGLSGPSQQTIRIGTMVTSESEILGQIVALLIEEETDL 60
Query: 56 KTNI--KLLAVPVTFRSLKNKGIDIFMGYWYPSL---------------EKFIAPYLEEG 98
+T + KL + V ++L +DI + + I
Sbjct: 61 QTELITKLGSSVVQHQALVQGDLDITAARYTGTDLSAALGMDPVTDRDEAMDIVKREFSE 120
Query: 99 SIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ G + A++ + I+ + +G++ +
Sbjct: 121 RFDQTWFDSYGFENTYALSVTEAFADEHGIETISDLEAFAPELRFGVDNSWVNRKG---- 176
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ + + + + + + V L++ + N+ L
Sbjct: 177 -DGYQGFQESYFAFGNVFPMNVGLVYEANASGHMDVVLAYSSDGRIQEYNLKVLEDDRRF 235
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
VVR++ L++ P +S LL+ + + E+ + ++ + V +T
Sbjct: 236 F--PPYDASPVVRNEVLEQYPELSPLLERLTGTITTEKMQELNYMADVELKNPRLVAQTF 293
Query: 277 LRTH 280
L +
Sbjct: 294 LEEN 297
>gi|296117923|ref|ZP_06836506.1| amine ABC transporter, periplasmic amine-binding protein
[Corynebacterium ammoniagenes DSM 20306]
gi|295969154|gb|EFG82396.1| amine ABC transporter, periplasmic amine-binding protein
[Corynebacterium ammoniagenes DSM 20306]
Length = 318
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 42/319 (13%), Positives = 90/319 (28%), Gaps = 47/319 (14%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVR-------------------FADTGWTDIAAT 41
M K++A +T ++ + +R +T+
Sbjct: 1 MKKVIATLTAASTLFLASCGLGTAGGLIRTGELKGDIADINLEGAAIGVGSKNFTEQILL 60
Query: 42 TAMTSVILEEILGYKTN--IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFI-------- 91
+ +++LE G + +++ + +D+ Y + ++
Sbjct: 61 GKIAAILLESA-GANAKDLTNVPGSTSARQAMVSGDLDVMFEYTGTAWITYMGNTDPIPD 119
Query: 92 --------APYLEEGSIKLVAENLQGAKYMLAVNDVG-FALGIKSYQDIAKYKKELGAKI 142
EE I+ + Y LAVN +++ DI K E +
Sbjct: 120 EQEQYEAVREADEENGIEWLPPYPMNNTYALAVNQDTNAEYELETLHDIEKIPPE-DRTV 178
Query: 143 YGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP 202
N + M+ I + N + + +
Sbjct: 179 CTDAEFRARNDGLFPMLEAYDLPAPSNSQI---MEMDVGAVYAALANGDCTLGVVFATDG 235
Query: 203 INSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMK 260
LN+ L E + + VRS+ +++ P I L ++ + E+
Sbjct: 236 RIPGLNLKVLEDPEAFF--PKYNAALTVRSEVIEEYPEIEELFAPLQDLLTNEKMQELNA 293
Query: 261 LILNNKQDRQFVGRTMLRT 279
+ + QD V L
Sbjct: 294 RVDIDGQDYADVAYDFLVE 312
>gi|289551422|ref|YP_003472326.1| Osmotically activated L-carnitine/choline ABC transporter, permease
protein OpuCB [Staphylococcus lugdunensis HKU09-01]
gi|289180953|gb|ADC88198.1| Osmotically activated L-carnitine/choline ABC transporter, permease
protein OpuCB [Staphylococcus lugdunensis HKU09-01]
Length = 504
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 37/303 (12%), Positives = 84/303 (27%), Gaps = 35/303 (11%)
Query: 2 YKILAVCLFLTTFSISYARDA---DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
K++ + I + A ++ + T M +++EE
Sbjct: 207 KKLMLATGAILLVIIIAIVAPLLSHKGDTITLAGKLGSEPSIITNMYKILIEEETDDTVE 266
Query: 59 IK--LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP-----------------YLEEGS 99
+K + F +LK+ ID ++ + L + +
Sbjct: 267 VKDGMGKTAFLFNALKSDDIDGYLEFTGTVLGELTKEDLKSKKEAAVYQQAKDSLQSKYD 326
Query: 100 IKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ ++ Y LAV +K+ D+AK +L N+ +
Sbjct: 327 MTMLKPMKYNNTYALAVKRDFAQKHHLKTIDDLAKVTDQLKPGFTL--EFNDRPDGFKAV 384
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
++ + +E + ++ ++ L
Sbjct: 385 KKAYNLNINNVKTMEPKLR------YSAIEKGDINLIDAYSTDAELKQYDMVVLKD--NK 436
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F + + +L++ I L + K S EM + +D V +
Sbjct: 437 HVFPPYQGAPMFKEKFLNEHKEIKAPLNRLAGKISDEEMQEMNYKVTVKNEDPYQVAKAF 496
Query: 277 LRT 279
L+
Sbjct: 497 LKK 499
>gi|296330401|ref|ZP_06872882.1| glycine betaine/carnitine/choline/choline sulfate ABC transporter
(osmoprotectant-binding lipoprotein) [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|305675994|ref|YP_003867666.1| glycine betaine/carnitine/choline/choline sulfate ABC transporter
osmoprotectant-binding lipoprotein [Bacillus subtilis
subsp. spizizenii str. W23]
gi|296152669|gb|EFG93537.1| glycine betaine/carnitine/choline/choline sulfate ABC transporter
(osmoprotectant-binding lipoprotein) [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|305414238|gb|ADM39357.1| glycine betaine/carnitine/choline/choline sulfate ABC transporter
(osmoprotectant-binding lipoprotein) [Bacillus subtilis
subsp. spizizenii str. W23]
Length = 305
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 29/279 (10%), Positives = 72/279 (25%), Gaps = 27/279 (9%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--LLAVPVTFRSLKNKGIDIF 79
S ++ T+ M + ++E T + L + V +++ IDI
Sbjct: 30 GASDETIKIGAQSMTESEILANMIAQLIEHDTDLNTALVKNLGSNYVQHQAMLGGDIDIS 89
Query: 80 MGYW---------------YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
+ P I + + G A
Sbjct: 90 ATRYSGTDLTSTLGKEAEKDPKKALNIVQNEFKKRFSYKWFDSYGFDNTYAFTVTKKFAE 149
Query: 125 IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA-SELASFSQI 183
+ ++ KK G++ + + K + + + +
Sbjct: 150 KEHIHTVSDLKKNASQYKLGVDNAWLKRKG-----DGYKGFVSTYGFEFGTTYPMQIGLV 204
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
+N L++ ++ L + F V+ L + P +
Sbjct: 205 YDAVKNGKMDAVLAYSTDGRIKAYDLKTLKD--DKHFFPPYDCSPVIPEKVLKEHPELEG 262
Query: 244 LLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
++ + + E+ + ++ V + L H
Sbjct: 263 VINKLIGQIDTETMQELNYEVDGKLKEPSVVAKEFLEKH 301
>gi|16766122|ref|NP_461737.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Typhimurium str. LT2]
gi|167992532|ref|ZP_02573630.1| glycine/betaine/proline transport protein [Salmonella enterica
subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168262081|ref|ZP_02684054.1| glycine/betaine/proline transport protein [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|205353761|ref|YP_002227562.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Gallinarum str. 287/91]
gi|207858080|ref|YP_002244731.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Enteritidis str.
P125109]
gi|16421360|gb|AAL21696.1| glycine/betaine/proline transport protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|205273542|emb|CAR38528.1| glycine betaine-binding periplasmic protein precursor [Salmonella
enterica subsp. enterica serovar Gallinarum str. 287/91]
gi|205329311|gb|EDZ16075.1| glycine/betaine/proline transport protein [Salmonella enterica
subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205349237|gb|EDZ35868.1| glycine/betaine/proline transport protein [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|206709883|emb|CAR34236.1| glycine betaine-binding periplasmic protein precursor [Salmonella
enterica subsp. enterica serovar Enteritidis str.
P125109]
gi|261247952|emb|CBG25785.1| glycine betaine-binding periplasmic protein precursor [Salmonella
enterica subsp. enterica serovar Typhimurium str.
D23580]
gi|267994927|gb|ACY89812.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Typhimurium str.
14028S]
gi|301159376|emb|CBW18894.1| glycine betaine-binding periplasmic protein precursor [Salmonella
enterica subsp. enterica serovar Typhimurium str.
SL1344]
gi|312913834|dbj|BAJ37808.1| glycine betaine ABC transporter substrate binding protein
[Salmonella enterica subsp. enterica serovar Typhimurium
str. T000240]
gi|321223608|gb|EFX48673.1| L-proline glycine betaine binding ABC transporter protein ProX
[Salmonella enterica subsp. enterica serovar Typhimurium
str. TN061786]
gi|323131167|gb|ADX18597.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Typhimurium str. 4/74]
gi|332989688|gb|AEF08671.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Typhimurium str. UK-1]
Length = 331
Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats.
Identities = 43/321 (13%), Positives = 89/321 (27%), Gaps = 37/321 (11%)
Query: 4 ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKL 61
I A + ++A D V+ + ++ T + S LE LGY
Sbjct: 6 IFASAFATLVTASAFAADLPGKGITVQPIQSTISEETFQTLLVSRALE-KLGYTVNKPSE 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V + S+ + W P + A + + GA ++
Sbjct: 65 VDYNVGYTSIASGDATFTAVNWQPLHDDMYAAAGGDNKFYREGVFVSGAAQGYLIDKKTA 124
Query: 122 ALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ I + A + G PG I K +
Sbjct: 125 EQYNITNIAQLKDPKIAKIFDTNGDGKADMMGCSPGWGCEAVINHQNKAFDL-QKTVEVS 183
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI-------------- 218
+ A + + P ++ +W P+ ++ + ++
Sbjct: 184 HGNYAAMMADTITRFKEGKPVLYYTWTPYWVSDVMKPGKDVVWLQVPFSSLPGEQKNIDT 243
Query: 219 -------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQF 271
GF +++ V + +K P ++L +K +A N ++ K
Sbjct: 244 KLPNGANYGFPVNTMHIVANKAWAEKNPAAAKLFAIMKLPLADINAQNAMMHAGKSSEAD 303
Query: 272 V---GRTMLRTHPDLLKNWLI 289
V + H W+
Sbjct: 304 VQGHVDGWINAHQQQFDGWVK 324
>gi|94310540|ref|YP_583750.1| substrate-binding region of ABC-type glycine betaine transport
system [Cupriavidus metallidurans CH34]
gi|93354392|gb|ABF08481.1| ABC-type transporter: periplasmic glycine betaine/choline-binding
lipoprotein and permease components transmembrane
[Cupriavidus metallidurans CH34]
Length = 516
Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats.
Identities = 38/308 (12%), Positives = 78/308 (25%), Gaps = 24/308 (7%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL 62
+ L L L + A AD +R +T+ + + E + L
Sbjct: 14 RFLGALLVLLVMACGPAAGAD---TLRIGSKRFTESYILGEILRQVAEPHGPVRYLPGLG 70
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIA---PYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ F++L+ ID++ Y + + E +A GA L ++
Sbjct: 71 NTAIVFQALQAGSIDLYPDYTGTLASEILRLPGTATLEQINAALAPMGLGAAIALGFDNT 130
Query: 120 GF----ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
S + + + +I + + +
Sbjct: 131 YAIAVSDAQPVSLRALGDLAGQPDLRIALSHEFLGRADGWPALKRAYGLPQRPSGIDHG- 189
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYL 235
+ + S ++ L + + V R D
Sbjct: 190 ------LAYEALAHGQIDATDIYSTDAKISKYHLRVLEDNQRVF--PRYEAVIVYRLDVP 241
Query: 236 DKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
+ + L+ + M + + V R L HP + GV
Sbjct: 242 TRHAAAWQALRRLAGTIGTQDMIAMNAAAEVDGKTFSAVARNFLSGHPGVSA---DGVAR 298
Query: 294 FDGQDPSR 301
D +D
Sbjct: 299 SDQRDNLA 306
>gi|326693856|ref|ZP_08230861.1| glycine betaine/carnitine/choline ABC transporter, substratebinding
and permease protein [Leuconostoc argentinum KCTC 3773]
Length = 504
Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats.
Identities = 33/307 (10%), Positives = 83/307 (27%), Gaps = 38/307 (12%)
Query: 2 YKILAVCLFLTTFSISYAR---DADSCTPVRFADTGWTDIAATTAMTSVILEE---ILGY 55
+++ V L + S A + + A ++ M + ++++
Sbjct: 206 RRVVLVGLSVLFIGGSVAPLLPQKQAPQTITIAGKLGSEPEILIHMYAALIKQSQPETRV 265
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL-------------------E 96
+ +L +K ID++ + P + +
Sbjct: 266 VLKPNFGVTTFLYEALTSKKIDLYPEFTGTITATLAKPPVTLPVGADAKTTYLAAKKVAQ 325
Query: 97 EGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
+ + Y +AV + ++ A + + +
Sbjct: 326 AQHLTITQPMQFNDAYGIAVPQDLAKQYHLTTIGDLQHLPHAKAGMTA--EFLDRPDGMP 383
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ +L L + + R +V ++ ++ L
Sbjct: 384 AIEQTYGLNLPKVSLDP-------ALRYQAVREQQVSVVDAYTTDSQIKQYHLKVLAD-- 434
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F ++RSD+ P I R + + + M + + Q + V R
Sbjct: 435 DRHVFPVYQGVGLMRSDFAKNHPEIVRAVNQLAGHITNEEMQAMNYAVNVDHQSAEQVAR 494
Query: 275 TMLRTHP 281
L+ H
Sbjct: 495 NYLKAHK 501
>gi|261822716|ref|YP_003260822.1| glycine/betaine ABC transporter periplasmic protein [Pectobacterium
wasabiae WPP163]
gi|261606729|gb|ACX89215.1| Substrate-binding region of ABC-type glycine betaine transport
system [Pectobacterium wasabiae WPP163]
Length = 335
Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 41/325 (12%), Positives = 89/325 (27%), Gaps = 40/325 (12%)
Query: 3 KILAVCLFLTTFS----ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
K+ A L S + V + ++ T + S LE LGY
Sbjct: 6 KLWAAALTTALLSTQVYAADTAQPGKGISVIPVQSTISEETFQTLLVSRALE-KLGYDVQ 64
Query: 59 -IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+ + V + S+ + W P + E + GA ++
Sbjct: 65 SPREVDYNVAYTSIASGDATFIAVNWDPLHADQYKAAGGDAKFYRQGEYVSGAAQGYLID 124
Query: 118 DVGFALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
+ + + A + G PG I + +
Sbjct: 125 KKTAEKYKITNIAQLKDPKIAKLFDTNGDGKADLTGCTPGWGCEAAINHHLPAYGLT-NT 183
Query: 169 FRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP----INSDLNIHYLPGGEE------- 217
+ + A + + P ++ +W P+ + ++ +L
Sbjct: 184 VEHNQGNYAAMIADTITRYKEGKPILYYTWTPYWVSDVLVPGRDVVWLQVPFSSQPGEMK 243
Query: 218 ----------ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNN-- 265
GF ++ + +K P ++L +K +A N +
Sbjct: 244 DVSTKLPNGADYGFPVNTMKIAANKVWTEKNPAAAKLFAIMKLPIADVNAQNLRMHEGQG 303
Query: 266 -KQDRQFVGRTMLRTHPDLLKNWLI 289
++D + ++ H L W+
Sbjct: 304 SQKDIERHVDGWIKAHQQLFDGWVK 328
>gi|56414769|ref|YP_151844.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Paratyphi A str. ATCC
9150]
gi|168244608|ref|ZP_02669540.1| glycine betaine-binding periplasmic protein [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
gi|194449221|ref|YP_002046774.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|197363697|ref|YP_002143334.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Paratyphi A str.
AKU_12601]
gi|56129026|gb|AAV78532.1| glycine betaine-binding periplasmic protein precursor [Salmonella
enterica subsp. enterica serovar Paratyphi A str. ATCC
9150]
gi|194407525|gb|ACF67744.1| glycine betaine-binding periplasmic protein [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|197095174|emb|CAR60724.1| glycine betaine-binding periplasmic protein precursor [Salmonella
enterica subsp. enterica serovar Paratyphi A str.
AKU_12601]
gi|205336577|gb|EDZ23341.1| glycine betaine-binding periplasmic protein [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
Length = 331
Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 43/321 (13%), Positives = 89/321 (27%), Gaps = 37/321 (11%)
Query: 4 ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKL 61
I A + ++A D V+ + ++ T + S LE LGY
Sbjct: 6 IFASAFATLVTASAFAADLPGKGITVQPIQSTISEETFQTLLVSRALE-KLGYTVNKPSE 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V + S+ + W P + A + + GA ++
Sbjct: 65 VDYNVGYTSIASGDATFTAVNWQPLHDDMYAAAGGDKKFYREGVFVSGAAQGYLIDKKTA 124
Query: 122 ALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ I + A + G PG I K +
Sbjct: 125 EQYNITNIAQLKDPKIAKIFDTNGDGKADMMGCSPGWGCEAVINHQNKAFDL-QKTVEVS 183
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI-------------- 218
+ A + + P ++ +W P+ ++ + ++
Sbjct: 184 HGNYAAMMADTITRFKEGKPVLYYTWTPYWVSDVMKPGKDVVWLQVPFSSLPGEQKNIDT 243
Query: 219 -------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQF 271
GF +++ V + +K P ++L +K +A N ++ K
Sbjct: 244 KLPNGANYGFPVNTMHIVANKAWAEKNPAAAKLFAIMKLPLADINAQNAMMHAGKSSEAD 303
Query: 272 V---GRTMLRTHPDLLKNWLI 289
V + H W+
Sbjct: 304 VQGHVDGWINAHQQQFDGWVK 324
>gi|314936978|ref|ZP_07844325.1| osmoprotectant ABC transporter, permease protein [Staphylococcus
hominis subsp. hominis C80]
gi|313655597|gb|EFS19342.1| osmoprotectant ABC transporter, permease protein [Staphylococcus
hominis subsp. hominis C80]
Length = 504
Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 33/275 (12%), Positives = 79/275 (28%), Gaps = 32/275 (11%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEILG--YKTNIKLLAVPVTFRSLKNKGIDIFMGYWY 84
+ A ++ + T M +++EE + F +LK+ ID ++ +
Sbjct: 235 TITMAGKLGSEPSIITNMYKILIEEETHDTVNVKSGMGKTSFLFNALKSDDIDGYLEFTG 294
Query: 85 PSLEKFIAP-----------------YLEEGSIKLVAENLQGAKYMLAVNDVGFALG-IK 126
L + ++ + ++ Y LAV ++
Sbjct: 295 TVLGELTKEDLKSKKEADVYHQAKASLEKKYDMTMLKPMKYNNTYALAVKRDFAKQYNLQ 354
Query: 127 SYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRD 186
S D+ K + +L + + + +L + +E
Sbjct: 355 SIGDLRKVQGQLKPGFTM--EFKDRDDGYKAVAKKYNLNLSNIKQMEPKLR------YTA 406
Query: 187 QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLK 246
+ ++ ++ L + F + + +L + P I + L
Sbjct: 407 VEKGDINLIDAYSTDAELKQYDMVVLKD--DKHVFPPYQGAPMFKEKFLKEHPEIKKALN 464
Query: 247 NI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+ K + EM + +D V + L
Sbjct: 465 QLSNKITDEQMQEMNYKVTVKNEDPYKVAKQYLEK 499
>gi|325846502|ref|ZP_08169417.1| glycine betaine-binding protein [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
gi|325481260|gb|EGC84301.1| glycine betaine-binding protein [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
Length = 295
Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 34/175 (19%), Positives = 64/175 (36%), Gaps = 5/175 (2%)
Query: 123 LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ ++ + I GIEPG + + +L S
Sbjct: 23 NKTDNDKEEVNFDYAPNDYIIGIEPGAGAMDAANQAMEDYDLKQ---KLTTGSSAVMTQM 79
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ + P V W PH + ++ +L + G E ++T+ R + PN
Sbjct: 80 LGDAIKEKAPIVVTGWTPHWKFAKYDLKFLEDPKGSFGKPE-EIHTLARKGLKEDKPNAY 138
Query: 243 RLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQ 297
+LL N ++V E++ LN+ D + R + + D +K GV +G+
Sbjct: 139 KLLDNFYWTVDDMQEVLVD-LNDGMDVKDAARKWVDNNQDRVKKMYEGVDRSNGE 192
Score = 55.6 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/109 (17%), Positives = 37/109 (33%), Gaps = 2/109 (1%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGY 82
+ + A W + + ILE+ G++ + + V F ++ D+
Sbjct: 189 SNGEVISLAHVIWDSELCSAYVLKDILED-YGFEVRMMAVEVGPLFAAVAYGSADVTTSA 247
Query: 83 WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDI 131
W P K + + + NL+ AK V I+ +D
Sbjct: 248 WLPLTHKNYMNKYGDM-VDDLGPNLKSAKIGFVVPSYMEIDSIEDLKDY 295
>gi|258507071|ref|YP_003169822.1| ABC transporter glycine betaine/carnitine/choline-binding protein
[Lactobacillus rhamnosus GG]
gi|257146998|emb|CAR85971.1| ABC transporter, glycine betaine/carnitine /choline-binding protein
[Lactobacillus rhamnosus GG]
gi|259648441|dbj|BAI40603.1| glycine betaine/carnitine/choline ABC transporter substrate binding
component [Lactobacillus rhamnosus GG]
Length = 309
Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 38/278 (13%), Positives = 75/278 (26%), Gaps = 25/278 (8%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGIDIF 79
+ + VR A T+ + + ++ LGYKT + + V +++ DI
Sbjct: 30 SGNDGTVRIASQTSTESQIMANIIAELINHELGYKTTLVNNLGSGTVVHQAMIRNDADIS 89
Query: 80 MGYWY---------------PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
+ PS I + G A
Sbjct: 90 ATRYTGTDITGTLGMNPVKSPSKAMTIVKREFKKRYDQTWYPSYGFSDTYAFMVTQEEAK 149
Query: 125 IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
+ +I+ KK G++ + + R+ +
Sbjct: 150 KDNLNNISDLKKVASRYNAGVDSSWMNRKGDGYSDFTKAYGFDFKRVYP----MQIGLVY 205
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
N L + N+ L ++ VV + L K P + L
Sbjct: 206 DAVEANRMQTVLGYSTDGRIRSYNLKILKDDKKFF--PPYQCSLVVNNSLLKKYPKLKPL 263
Query: 245 LKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
L + K ++ E+ + + + V + L H
Sbjct: 264 LHRLDGKINLKTMQELNYQVDDQLLEPNVVAQKFLAKH 301
>gi|238909582|ref|ZP_04653419.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Tennessee str.
CDC07-0191]
Length = 331
Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 42/321 (13%), Positives = 90/321 (28%), Gaps = 37/321 (11%)
Query: 4 ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKL 61
I A + ++A D ++ + ++ + T + S LE LGY
Sbjct: 6 IFASAFATLVTASAFAADLPGKGITIQPIQSTISEESFQTLLVSRALE-KLGYTVNKPSE 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V + S+ + W P + A + + GA ++
Sbjct: 65 VDYNVGYTSIASGDATFTAVNWQPLHDDMYAAAGGDKKFYREGVFVSGAAQGYLIDKKTA 124
Query: 122 ALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ I + A + G PG I K +
Sbjct: 125 EQYNITNIAQLKDPKIAKIFDTNGDGKADMMGCSPGWGCEAVINHQNKAFDL-QKTVEVS 183
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI-------------- 218
+ A + + P ++ +W P+ ++ + ++
Sbjct: 184 HGNYAAMMADTITRFKEGKPVLYYTWTPYWVSDVMKPGKDVVWLQVPFSSLPGEQKNIDT 243
Query: 219 -------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQF 271
GF +++ V + +K P ++L +K +A N ++ K
Sbjct: 244 KLPNGANYGFPVNTMHIVANKAWAEKNPAAAKLFAIMKLPLADINAQNAMMHAGKSSEAD 303
Query: 272 V---GRTMLRTHPDLLKNWLI 289
V + H W+
Sbjct: 304 VQGHVDGWINAHQQQFDGWVK 324
>gi|224499721|ref|ZP_03668070.1| glycine betaine/carnitine/choline-binding protein
(Osmoprotectant-binding protein) [Listeria monocytogenes
Finland 1988]
Length = 321
Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 30/277 (10%), Positives = 72/277 (25%), Gaps = 25/277 (9%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGIDIF 79
S +R T+ + + ++E G K I + V +++ N +DI
Sbjct: 30 GSSKDTIRIGAMATTESQIVSNILKELIEHDTGLKVEIVNNLGSTIVQHQAMLNGDVDIT 89
Query: 80 MGYWY---------------PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
+ P E + G
Sbjct: 90 ATRYTGTDLVGPLGEEAIKDPEKALAAVKKGFEERFHQTWFDSYGFANTYVFMVRQDTAK 149
Query: 125 IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
+ ++ +K G++ + + + ++ ++ I
Sbjct: 150 KYNLNTVSDMRKVENELTAGVDNSWMEREGDGYKAFSKAYDIEFKKIFP----MQIGLIY 205
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
+NN V L + N+ L ++ + + L K P +
Sbjct: 206 TALKNNQMDVALGYSTDGRIPTYNLKLLKDDKKFF--PPYDASALATDEILKKHPELKTT 263
Query: 245 LKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+ + K S ++ ++ V + L+
Sbjct: 264 INKLKGKISTEEMQKLNYEADGKLKEPSIVAQEFLQK 300
>gi|88860796|ref|ZP_01135433.1| putative ABC transporter, substrate-binding protein
[Pseudoalteromonas tunicata D2]
gi|88817391|gb|EAR27209.1| putative ABC transporter, substrate-binding protein
[Pseudoalteromonas tunicata D2]
Length = 327
Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 44/320 (13%), Positives = 102/320 (31%), Gaps = 35/320 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDA--------DSCTPVRFADTGWTDIAATTAMTSVILEEI 52
M ++ +V L ++ + V A W + ++++
Sbjct: 1 MKRVYSVLSALLFYAFIFFSQQSVAGQIIQAQKPVVVIAVNEWASQRVLSQAVGTLIKQ- 59
Query: 53 LGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKY 112
LGY + ++V + +L+ + I + W S+ + L + + + + +
Sbjct: 60 LGYPVEYQDISVEDQWGALRQGIVHIQVEVWQSSVTDVLVKGLAKRWFEDLGNHDAIGRE 119
Query: 113 MLAVNDVGFA--LGIKSYQDIAKYKKEL---GAKIYGIEPGNEGNQRILDMINNNKFSLK 167
V + + +Q + + G+ N R ++I +
Sbjct: 120 EWWVPEYVLELCPQLPDWQALNQCASLFASENNPKQGLFFTGPWNARHAELIRALNLDFR 179
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE---------- 217
RL +S + + ++ N P V L+W P+ + + ++ +
Sbjct: 180 IKRL--SSAMPLWQKLNYAVENKKPIVLLNWTPNWTDLYVKGQFIKFPQYEPECELNPNW 237
Query: 218 --------ISGFGE-ASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQD 268
G E + + + P +LLKNI+FS + + L +
Sbjct: 238 GINNNMTHDCGSPEVSQIKKIAWPGLEQTSPCAYQLLKNIQFSHEMIAKASALKEVEQYS 297
Query: 269 RQFVGRTMLRTHPDLLKNWL 288
+ L + + WL
Sbjct: 298 EAQAAQLWLSYYHQQVVTWL 317
>gi|314935347|ref|ZP_07842700.1| putative ABC transporter, substrate-binding protein [Staphylococcus
hominis subsp. hominis C80]
gi|330827451|ref|YP_004400651.1| periplasmic component of ABC-type proline glycine betaine transport
system [Staphylococcus saprophyticus subsp.
saprophyticus MS1146]
gi|313656682|gb|EFS20421.1| putative ABC transporter, substrate-binding protein [Staphylococcus
hominis subsp. hominis C80]
gi|328887849|emb|CBW54942.1| periplasmic component of ABC-type proline glycine betaine transport
system [Staphylococcus saprophyticus subsp.
saprophyticus MS1146]
Length = 314
Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 43/272 (15%), Positives = 104/272 (38%), Gaps = 7/272 (2%)
Query: 26 TPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA-VPVTFRSLKNKGIDIFMGYWY 84
+ + + + + +L++ GY + + ++ +
Sbjct: 45 KEIEIPYIASDNSTPRSLVIAEVLKKA-GYDVTTTPVTASGPLYTAVSENSDSFHASGIF 103
Query: 85 PSLEK-FIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIY 143
P+ +K + + + +I + AK LAV + S + + K + I
Sbjct: 104 PTTDKSYYDKFKSKLTIYDDKHLIDNAKVGLAVPKYVQDVDSISDLKNSDFGKSVDWTIQ 163
Query: 144 GIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPI 203
G + N Q D ++++ + L E+S+ F +I+ + P VF S EP
Sbjct: 164 GTDARNGVMQETKDELDSDNLDK--YSLKESSDQDQFKKIQSAFKQQEPIVFTSMEPSWF 221
Query: 204 NSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKL 261
+ +L++ L + I G + V ++ + P + + +S + E+++ K
Sbjct: 222 SKELDVKMLKDPDNIYGNNNQHIDLVFNKNFKEAHPAAYTIATRMADDWSKSDEDKLAKK 281
Query: 262 ILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
I + ++ + V + + + + + WL + T
Sbjct: 282 IFVDNKNPEQVAKDYVDDNDNKVDEWLEDIET 313
>gi|312278641|gb|ADQ63298.1| Proline/glycine betaine ABC transporter membrane-spanning protein
[Streptococcus thermophilus ND03]
Length = 305
Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats.
Identities = 46/308 (14%), Positives = 94/308 (30%), Gaps = 40/308 (12%)
Query: 2 YKILAVCLFLTTFSISYA-----------RDADSCTPVRFADTGWTDIAATTAMTSVILE 50
K+ L + + + +R +T+ + ++ LE
Sbjct: 4 KKLFLGILLAIIIGVVTGFIFVGKHSHNVNSSKTNATIRIGSKDFTENLVVAEIYALALE 63
Query: 51 EILGYKTNIKLL-AVPVTFRSLKNKGIDIFMGYWYPS----------------LEKFIAP 93
+ GYK + + RSL NK ID++ Y E
Sbjct: 64 DN-GYKVQRVSNISSSLIHRSLINKEIDLYPEYTGTGLLSILKEPMETDSQKVYETVKKD 122
Query: 94 YLEEGSIKLVAENLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKKELGAKIYGIEPGNEGN 152
Y ++ + + L + GIK+ D+ ++ EL G ++
Sbjct: 123 YEKKFKVTWLKYASANDGQGLVIRTDIANQLGIKTISDLQRHASELNFASQG--EFDQRE 180
Query: 153 QRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYL 212
+ + ++S++ S N V ++ + + YL
Sbjct: 181 DGLPGLAKIYGDFSW-----KSSKVYDNSLKYTVLDNKEADVTPAYTTEGQLINTD-KYL 234
Query: 213 PGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQ 270
++ + ++ +VR D L P I L I K A ++ + Q+ Q
Sbjct: 235 LLRDDKHFWPPYNLAPIVRDDVLKSNPKIESTLNKISKKLDTATVTKLNAKVDVEGQNYQ 294
Query: 271 FVGRTMLR 278
V + +
Sbjct: 295 KVAQDFYK 302
>gi|310657354|ref|YP_003935075.1| ABC transporter periplasmic-binding protein [Clostridium
sticklandii DSM 519]
gi|308824132|emb|CBH20170.1| putative transporter subunit: periplasmic-binding component of ABC
superfamily [Clostridium sticklandii]
Length = 313
Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats.
Identities = 39/301 (12%), Positives = 89/301 (29%), Gaps = 32/301 (10%)
Query: 4 ILAVCLFLTTFSISY-ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IK 60
+ + + + + +S +R +T+ +T + LE+ G++
Sbjct: 14 LFGLIMVVLLILSGCTSGTNESQNKIRVGSKDFTEQLILGQITLLALEDA-GFEVEDKTN 72
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL-----------------EEGSIKLV 103
+ +L+N ID++ Y + E I +
Sbjct: 73 VAGSEQVRSALENDEIDVYWEYTGTGWLMHLQKDEVITNSQEAYEKVKSEDKEANDIVWL 132
Query: 104 AENLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKKE--LGAKIYGIEPGNEGNQRILDMIN 160
Y + +N IKS D+A Y E + + +
Sbjct: 133 DYASLNNTYTIMMNKDDSEKLNIKSISDMANYVNENPGQLSFAADHEFTARPDGLPALED 192
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISG 220
F+ G L + R ++ + + + + L E
Sbjct: 193 EYGFAFDGDSLKVMDIGI----VYRTLKDRQVDSGMGFATDGRIAAFDFVNLEDDMEFF- 247
Query: 221 FGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
+ +R++ L+K P ++ +L I K +M + +++ + V + L
Sbjct: 248 -PVYNAAATLRAETLEKHPELADVLNKITEKLDNETMIKMNYQVDIEEKEPKEVAKNWLE 306
Query: 279 T 279
Sbjct: 307 E 307
>gi|199599185|ref|ZP_03212588.1| Periplasmic glycine betaine/choline-binding (lipo)protein of an
ABC-type transport system (osmoprotectant binding
[Lactobacillus rhamnosus HN001]
gi|229551030|ref|ZP_04439755.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, binding protein [Lactobacillus
rhamnosus LMS2-1]
gi|258538259|ref|YP_003172758.1| glycine betaine/carnitine/choline ABC transporter substrate-binding
protein [Lactobacillus rhamnosus Lc 705]
gi|199589938|gb|EDY98041.1| Periplasmic glycine betaine/choline-binding (lipo)protein of an
ABC-type transport system (osmoprotectant binding
[Lactobacillus rhamnosus HN001]
gi|229315625|gb|EEN81598.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, binding protein [Lactobacillus
rhamnosus LMS2-1]
gi|257149935|emb|CAR88907.1| ABC transporter, glycine betaine/carnitine /choline-binding protein
[Lactobacillus rhamnosus Lc 705]
Length = 309
Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats.
Identities = 38/278 (13%), Positives = 75/278 (26%), Gaps = 25/278 (8%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGIDIF 79
+ + VR A T+ + + ++ LGYKT + + V +++ DI
Sbjct: 30 SGNDGTVRIASQTSTESQIMANIIAELINHELGYKTTLVNNLGSGTVVHQAMIRNDADIS 89
Query: 80 MGYWY---------------PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
+ PS I + G A
Sbjct: 90 ATRYTGTDITGTLGMNPVKSPSKAMTIVKREFKKRYDQTWYPSYGFSDTYAFMVTQEEAK 149
Query: 125 IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
+ +I+ KK G++ + + R+ +
Sbjct: 150 KDNLNNISDLKKVASQYNAGVDSSWMNRKGDGYSDFTKAYGFDFKRVYP----MQIGLVY 205
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
N L + N+ L ++ VV + L K P + L
Sbjct: 206 DAVEANRMQTVLGYSTDGRIRSYNLKILKDDKKFF--PPYQCSLVVNNSLLKKYPKLKPL 263
Query: 245 LKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
L + K ++ E+ + + + V + L H
Sbjct: 264 LHRLDGKINLKTMQELNYQVDDQLLEPNVVAQKFLAKH 301
>gi|15803199|ref|NP_289231.1| glycine betaine transporter periplasmic subunit [Escherichia coli
O157:H7 EDL933]
gi|25297693|pir||A85916 hypothetical protein proX [imported] - Escherichia coli (strain
O157:H7, substrain EDL933)
gi|12517118|gb|AAG57789.1|AE005496_12 high-affinity transport system for glycine betaine and proline
[Escherichia coli O157:H7 str. EDL933]
Length = 330
Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats.
Identities = 40/316 (12%), Positives = 90/316 (28%), Gaps = 35/316 (11%)
Query: 7 VCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKLLAVP 65
L + A V + T+ T + S LE LGY +
Sbjct: 10 AFATLISTQTFXADLPGKGITVNPVQSTITEETFQTLLVSRALE-KLGYTVNKPSEVDYN 68
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
V + SL + W P + + + GA ++
Sbjct: 69 VGYTSLASGDATFTAVXWTPLHDNMYEAAGGDKKFYREXVFVNGAAQGYLIDKKTADQYK 128
Query: 126 KSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ + + A + G PG I + + + + +
Sbjct: 129 ITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGWGCEGAINHQLAAYELT-NTVTHNQGNY 187
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEEI-------------- 218
A + + P + +W P+ ++++ ++ +L
Sbjct: 188 AAMMADTISRYKEGKPVFYYTWTPYWVSNELKPGKDVVWLQVPFSALPGDKNADTKLPNG 247
Query: 219 --SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV---G 273
GF ++++ V + +K P ++L ++ VA N ++ + K +
Sbjct: 248 ANYGFPVSTMHIVANKAWAEKNPAAAKLFAIMQLPVADINAQNAIMHDGKASEGDIQGHV 307
Query: 274 RTMLRTHPDLLKNWLI 289
++ H W+
Sbjct: 308 DGWIKAHQQQFDGWVN 323
>gi|294789947|ref|ZP_06755167.1| choline transporter [Simonsiella muelleri ATCC 29453]
gi|294482113|gb|EFG29820.1| choline transporter [Simonsiella muelleri ATCC 29453]
Length = 517
Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats.
Identities = 40/304 (13%), Positives = 91/304 (29%), Gaps = 38/304 (12%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEE---ILGYKTNIK 60
I A+ + +S + V A ++ M +++E +
Sbjct: 208 IFALAVGFGVLGLSQVSFTPATQNVVIAGKMGSEPDILINMYKLLIEHENPNIKVTVKPN 267
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEE---------------------GS 99
F +LK+ I+I+ + LE + E+
Sbjct: 268 FGKTTFLFNALKSGKINIYPEFTGTVLEALVQVKPEQKNRHLSPTETYQRGKQLLAEQYQ 327
Query: 100 IKLVAENLQGAKYMLAVND-VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
++ + Y LAV + G + +K+ D+ + + + D
Sbjct: 328 LEFLLPMSYQNTYALAVKESYGASHQLKTISDLKQ---------VAPDIRAGFSLEFTDR 378
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ K ++ + N+ + ++ + L +I
Sbjct: 379 ADGYKGMQSAGISLKHIVSLEPALRYTALLNDKIDLVEAFSTDAELKQYQLRLLKD--DI 436
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
S F ++++++ +K P I L + K S +EM + + V R
Sbjct: 437 SLFPAYQGAPLMKAEFAEKNPQIVTALNRLAGKISEEEMSEMNYRVKVQGTSAENVARDY 496
Query: 277 LRTH 280
L+ +
Sbjct: 497 LKKN 500
>gi|62181315|ref|YP_217732.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SC-B67]
gi|168233772|ref|ZP_02658830.1| ABC family protein [Salmonella enterica subsp. enterica serovar
Kentucky str. CDC 191]
gi|168822874|ref|ZP_02834874.1| ABC family protein [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|194472006|ref|ZP_03077990.1| ABC superfamily [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|62128948|gb|AAX66651.1| ABC superfamily (bind_prot), glycine/betaine/proline transport
protein [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|194458370|gb|EDX47209.1| ABC superfamily [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|205332215|gb|EDZ18979.1| ABC family protein [Salmonella enterica subsp. enterica serovar
Kentucky str. CDC 191]
gi|205340802|gb|EDZ27566.1| ABC family protein [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|320087217|emb|CBY96983.1| Glycine betaine-binding periplasmic protein Flags: Precursor
[Salmonella enterica subsp. enterica serovar Weltevreden
str. 2007-60-3289-1]
Length = 331
Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats.
Identities = 43/321 (13%), Positives = 90/321 (28%), Gaps = 37/321 (11%)
Query: 4 ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKL 61
I A + ++A D V+ + ++ + T + S LE LGY
Sbjct: 6 IFASAFATLVTASAFAADLPGKGITVQPIQSTISEESFQTLLVSRALE-KLGYTVNKPSE 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V + S+ + W P + A + + GA ++
Sbjct: 65 VDYNVGYTSIASGDATFTAVNWQPLHDDMYAAAGGDNKFYREGVFVSGAAQGYLIDKKTA 124
Query: 122 ALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ I + A + G PG I K +
Sbjct: 125 EQYNITNIAQLKDPKIAKIFDTNGDGKADMMGCSPGWGCEAVINHQNKAFDL-QKTVEVS 183
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI-------------- 218
+ A + + P ++ +W P+ ++ + ++
Sbjct: 184 HGNYAAMMADTITRFKEGKPVLYYTWTPYWVSDVMKPGKDVVWLQVPFSSLPGEQKNIDT 243
Query: 219 -------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQF 271
GF +++ V + +K P ++L +K +A N ++ K
Sbjct: 244 KLPNGANYGFPVNTMHIVANKAWAEKNPAAAKLFAIMKLPLADINAQNAMMHAGKSSEAD 303
Query: 272 V---GRTMLRTHPDLLKNWLI 289
V + H W+
Sbjct: 304 VQGHVDGWINAHQQQFDGWVK 324
>gi|313637868|gb|EFS03198.1| BilEB [Listeria seeligeri FSL S4-171]
Length = 504
Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats.
Identities = 37/297 (12%), Positives = 87/297 (29%), Gaps = 32/297 (10%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
++ + LT I + A + M +++E+ K N+K
Sbjct: 212 TISAGILLTAAIIVVPYFVSDKKEITIAGKLGAEPEILINMYKLVIEDETDLKVNVKPNM 271
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP-----------------YLEEGSIKLVA 104
F +LK+ IDI+ + LE F+ +E + +
Sbjct: 272 GKTSFVFNALKSGDIDIYPEFTGTVLETFLKENAKTHDPEQVYKQARDGLAKEFDMTYLK 331
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKF 164
Y LAV+ K + D + K
Sbjct: 332 PMEYNNTYALAVSPEFAKKNNLE--------KISDLGPVTDQVKAGFTLEFKDRSDGYKG 383
Query: 165 SLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+ + L + ++ ++ + ++ + + L +++
Sbjct: 384 IQETYGLTFPNLKTMEPKLRYNAIKSGDINLLDAYSTDSELAQYKLKVLEDDQQLF--PP 441
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
++ ++ L+K P + + L + K + +M + N + V + L+
Sbjct: 442 YQGAPLMLTETLNKYPELRKPLNKLAGKITDDEMRKMNYEVNVNGKSAYTVAKNYLQ 498
>gi|315658931|ref|ZP_07911798.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, membrane protein [Staphylococcus
lugdunensis M23590]
gi|315496055|gb|EFU84383.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, membrane protein [Staphylococcus
lugdunensis M23590]
Length = 504
Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats.
Identities = 37/303 (12%), Positives = 85/303 (28%), Gaps = 35/303 (11%)
Query: 2 YKILAVCLFLTTFSISYARDA---DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
K++ + I + A ++ + T M +++EE
Sbjct: 207 KKLMLATGAILLVIIIAIVAPLLSHKGDTITLAGKLGSEPSIITNMYKILIEEETDDTVE 266
Query: 59 IK--LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP-----------------YLEEGS 99
+K + F +LK+ ID ++ + L + +
Sbjct: 267 VKDGMGKTAFLFNALKSDDIDGYLEFTGTVLGELTKEDLKSKKEAAVYQQAKDSLQSKYD 326
Query: 100 IKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ ++ Y LAV +K+ D+AK +L N+ +
Sbjct: 327 MTMLKPMKYNNTYALAVKRDFAQKHHLKTIDDLAKVTDQLKPGFTL--EFNDRPDGFKAV 384
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ ++ + +E + ++ ++ L
Sbjct: 385 KKSYNLNINNVKTMEPKLR------YSAIEKGDINLIDAYSTDAELKQYDMVVLKD--NK 436
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F + + +L++ I L + K S EM + +D V +
Sbjct: 437 HVFPPYQGAPMFKEKFLNEHKEIKAPLNRLAGKISDEEMQEMNYKVTVKNEDPYQVAKAF 496
Query: 277 LRT 279
L+
Sbjct: 497 LKK 499
>gi|330888742|gb|EGH21403.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. mori str. 301020]
Length = 292
Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats.
Identities = 39/296 (13%), Positives = 86/296 (29%), Gaps = 30/296 (10%)
Query: 9 LFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL-AVPVT 67
A +R +T+ +T+ L Y I +
Sbjct: 2 FLGLALLFPAFAQAADKPLLRVGARVFTEQTMLAELTAQYLRTK-NYDVQITGGLGSNLA 60
Query: 68 FRSLKNKGIDIFMGYWYPSLEKF---------------IAPYLEEGSIKLVAENLQGAKY 112
+ ++ +D+ Y SL + + + + ++ + Y
Sbjct: 61 RSAQESGQLDLLWEYTGVSLVAYNHIDEKLDSAQTYARVKEVDAKKGLVWLSPSKFNNTY 120
Query: 113 MLAVNDVGFALG-----IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
LA+ + + K + + G + + ++ M+ + +L
Sbjct: 121 ALALPQKVADKYPQVNTMTDLTKVLKDEAKEGHVVALDTEFANRSDGLIGMVKHYDMNLG 180
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
+ + RN L + + + L + F + +
Sbjct: 181 REN----TRQMDAGLVYTALRNGQVFAGLVYTTDGRLNAFKLKVLED--DKHYFPDYTAA 234
Query: 228 TVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRTHP 281
V+R +YLDK P+I+ LLK + ++ + + V LR HP
Sbjct: 235 PVIRQEYLDKHPDIATLLKPLADLLDNQTMIDLNARVDVGHESPSTVAADFLRQHP 290
>gi|325528147|gb|EGD05341.1| choline ABC transporter, periplasmic binding protein [Burkholderia
sp. TJI49]
Length = 207
Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats.
Identities = 83/208 (39%), Positives = 117/208 (56%), Gaps = 9/208 (4%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTP-------VRFADTGWTDIAATTAMTSVILEEIL 53
M L T + +A VRFAD GWTDI +TTA+ S + E L
Sbjct: 1 MKSTKIAALVAVTLATGALANAAQAETDGATCRNVRFADIGWTDITSTTALASTVFE-GL 59
Query: 54 GYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLV-AENLQGAKY 112
GYK + +VP++F LK+K +D+ +GYW+P +K + P+L+ SI +V NL GAK
Sbjct: 60 GYKPTTTISSVPISFAGLKSKQLDVSLGYWWPVQQKQLQPFLDSKSINVVEPPNLSGAKA 119
Query: 113 MLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
LAV + G+K++ DIA+++ EL KIYGIEPG+ N I MI+ N++ L GF+L+
Sbjct: 120 TLAVPSYAYQAGLKTFDDIARHRAELDGKIYGIEPGSSANATIQKMIDTNQYGLGGFKLV 179
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEP 200
E+SE + R R VFL WEP
Sbjct: 180 ESSEAGMLVTVERAIREKKWVVFLGWEP 207
>gi|56962847|ref|YP_174573.1| glycine betaine ABC transporter substrate-binding protein [Bacillus
clausii KSM-K16]
gi|56909085|dbj|BAD63612.1| glycine betaine ABC transporter substrate-binding protein [Bacillus
clausii KSM-K16]
Length = 310
Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats.
Identities = 34/156 (21%), Positives = 63/156 (40%), Gaps = 4/156 (2%)
Query: 142 IYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPH 201
I GI+PG +Q I + L +S + + + + P V +W PH
Sbjct: 57 ITGIDPGAGVSQAAERAIEDYDL--TNLTLQTSSSSSMAQALDTAIQKHEPIVVTAWNPH 114
Query: 202 PINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKL 261
+ ++ YL E G G ++T+ R + P +++ N +S NE+M
Sbjct: 115 WKFAAYDLKYLDDPEGSFG-GTEEIHTIARQGLESEKPEGYQVVDNFFWSEDDMNEVMLA 173
Query: 262 ILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQ 297
+ D + + + + + W+ GV T DG+
Sbjct: 174 VH-EGADPAEAAQEWVDNNQEKVDEWIDGVDTVDGE 208
Score = 52.5 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 5/105 (4%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYW 83
W A++ + ++ LE+ +GY + ++ ++SL++ D + W
Sbjct: 206 DGESFSLVLVNWDSEVASSNVLALALEQ-VGYDVELSVVENGPMWKSLESGDQDASVAAW 264
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQG-AKYMLAVNDVGFALGIKS 127
P E + + NL G + LAV I+
Sbjct: 265 LPITHGSFFD---ESKVDDLGVNLDGEPRIGLAVPSYMDIDSIED 306
>gi|329944191|ref|ZP_08292450.1| ABC transporter, substrate-binding protein, QAT family [Actinomyces
sp. oral taxon 170 str. F0386]
gi|328530921|gb|EGF57777.1| ABC transporter, substrate-binding protein, QAT family [Actinomyces
sp. oral taxon 170 str. F0386]
Length = 291
Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats.
Identities = 49/285 (17%), Positives = 102/285 (35%), Gaps = 11/285 (3%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNIK 60
+ L + R + +R W+D + T + LE+ GY+ +
Sbjct: 8 FTTALASLTAAGALSACGRSSGGGKRLRLGFVPSWSDGLSMTHLLKTQLEKA-GYQIKLT 66
Query: 61 -LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
L + L +D++ W K + I+ + AK +V D
Sbjct: 67 DLSEAGPLYAGLSQGAVDLYPSAWPDVTHKDYMDKYRKY-IEDLGSYYDSAKLCWSVPDY 125
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
S +DI + ++ +I GIE G+ + + + L+ + + +S +
Sbjct: 126 SEM---TSIEDIKPHASQIDNRIVGIESGSGLVKASEGKV-IPAYGLQDMKFLTSSTASM 181
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+++++ V W P N+ N+ L ++ G GE ++ + R + P
Sbjct: 182 LTELKKAVDAKKEIVVTLWHPFWANTTFNMRDLEDPKDAFGKGEG-LHFLGREGFAQDYP 240
Query: 240 NISRLLKNIKFSVALENEMMKLILN--NKQDRQFVGRTMLRTHPD 282
I+ L +IK A + L++N + + +P
Sbjct: 241 EIASWLGSIKMDEATYGNLEDLVVNTYGEGKEDQAAIAWSQKYPQ 285
>gi|253734130|ref|ZP_04868295.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Staphylococcus aureus
subsp. aureus TCH130]
gi|253727825|gb|EES96554.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Staphylococcus aureus
subsp. aureus TCH130]
Length = 313
Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats.
Identities = 30/308 (9%), Positives = 77/308 (25%), Gaps = 34/308 (11%)
Query: 1 MYKI-------LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL 53
M KI + L+ S+ + V+ ++ + +++E
Sbjct: 1 MKKIKYILVVFVLSLTVLSGCSLPGLGSKSTKNDVKITALSTSESQIISHTLRLLIEHDT 60
Query: 54 GYKTNIKL----LAVPVTFRSLKNKGIDIF-MGYWYPSLEKFIAPYL------------- 95
K L + + +L N +I + Y L +
Sbjct: 61 HGKIKPTLVNNLGSSTIQHNALINGDANISGVRYNGTDLTGALKEAPIKDPKKAMIATQQ 120
Query: 96 -EEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQR 154
+ + G A + ++ K G++ +
Sbjct: 121 GFKKKFDQTFFDSYGFANTYAFMVTKETAKKYHLETVSDLAKHSKDLRLGMDSSWMNRKG 180
Query: 155 ILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPG 214
++ + + + V L + + ++ L
Sbjct: 181 DGYEGFKKEYGFDFGTVRP----MQIGLVYDALNSEKLDVALGYSTDGRIAAYDLKVLKD 236
Query: 215 GEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFV 272
+ F + V ++ L + P + + + K S + + ++ V
Sbjct: 237 --DKQFFPPYAASAVATNELLRQHPELKTTINKLTGKISTSEMQRLNYEADGKGKEPAVV 294
Query: 273 GRTMLRTH 280
L+ H
Sbjct: 295 AEEFLKKH 302
>gi|167041158|gb|ABZ05917.1| putative Substrate binding domain of ABC-type glycine betaine
transport system [uncultured marine microorganism
HF4000_001B09]
Length = 323
Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats.
Identities = 42/295 (14%), Positives = 88/295 (29%), Gaps = 25/295 (8%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+ K L V ++ A ADS P R W+ + ILE+ +G
Sbjct: 14 IIKGLVVAAIISA-FSFAAYAADSKKPTRIPVHNWSSQIVMAYVIGGILED-MGGNVEYV 71
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAEN----LQGAKYMLAV 116
+ S++ IDI W + K ++G + ++ L+ Y V
Sbjct: 72 PADSQKVYESIRIGDIDISQEVWQSAFGKSFDAARDKGGLLDWGDHVARSLEDMGYPNWV 131
Query: 117 NDVGFALGIKSYQDIA--KYKKELGAKIYGIEPGN------EGNQRILDMINNNKFSLKG 168
+ G G+ S++ + K G + + +
Sbjct: 132 EEKGLCPGLPSWEALKAEACWKNFVTPDSGGKGRWLEGPQTWHQDLMPQRMTALGLDANW 191
Query: 169 FRLIEASELASFSQIRRDQRNNIPAVFLSWEP-----------HPINSDLNIHYLPGGEE 217
S A ++++ ++ + +W P GG+
Sbjct: 192 VVKFAGSADALWAELAAAEKEGRGTIIFNWTPNFTDGAGFTFIDFPPYTDGCRPADGGDG 251
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
G + + V + P+ +++ K + F+ M + +K +
Sbjct: 252 KCGSPDGYLKKAVNEKWTKTHPDAAKMFKKLAFTTGQIGAMAAYVDVDKMTHEDA 306
>gi|104780259|ref|YP_606757.1| glycine betaine/carnitine/choline ABC transporter periplasmic
binding protein [Pseudomonas entomophila L48]
gi|95109246|emb|CAK13943.1| putative glycine betaine/carnitine/choline ABC transporter,
periplasmic binding protein [Pseudomonas entomophila
L48]
Length = 303
Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats.
Identities = 39/304 (12%), Positives = 87/304 (28%), Gaps = 32/304 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K +A+ L +A+ AD +R +T+ +T+ L G+ +
Sbjct: 1 MKKTIALLLGAALLCAGFAQAAD-KPLIRIGARVFTEQTVLAEITAQYLRAN-GFDVRVT 58
Query: 61 LLAVPVT-FRSLKNKGIDIFMGYWY-------------PSLEKFI---APYLEEGSIKLV 103
++ + +D+ Y P+ E + + +
Sbjct: 59 SGLGSNIARQAQETGQLDLMWEYTGVSLVSYNHIDERMPNAEATYARVKALDAKKGLVWL 118
Query: 104 AENLQGAKYMLAVNDVGFALG-----IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ + Y L + I + + ++ + ++ +
Sbjct: 119 SPSKFSNTYALGLPRQVAEAYPQVNTISDLKQVLHAERTRHHLVALDTEFANRPDGLVGL 178
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
L + + + RNN L + + + L +
Sbjct: 179 REVYDLPLDRRNIRQMDGG----LVYTAMRNNQVFAGLVYTTDGRLNAFALKLLAD--DK 232
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F + + V+R LD P ++ LLK + + ++ + Q V
Sbjct: 233 HYFPDYTAAPVLRKAVLDAHPQLAALLKPLAEQLDDETMRQLNAQVDVEHQSPTVVATAF 292
Query: 277 LRTH 280
LR H
Sbjct: 293 LREH 296
>gi|16761592|ref|NP_457209.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Typhi str. CT18]
gi|29143072|ref|NP_806414.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Typhi str. Ty2]
gi|168238726|ref|ZP_02663784.1| glycine betaine-binding periplasmic protein [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
gi|194735674|ref|YP_002115767.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|197251766|ref|YP_002147711.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
gi|204929698|ref|ZP_03220772.1| glycine betaine-binding periplasmic protein [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|213027225|ref|ZP_03341672.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Typhi str. 404ty]
gi|213163679|ref|ZP_03349389.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Typhi str. E00-7866]
gi|213418878|ref|ZP_03351944.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Typhi str. E01-6750]
gi|213581948|ref|ZP_03363774.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Typhi str. E98-0664]
gi|289824478|ref|ZP_06544054.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Typhi str. E98-3139]
gi|25297696|pir||AC0842 glycine betaine-binding periplasmic protein precursor [imported] -
Salmonella enterica subsp. enterica serovar Typhi
(strain CT18)
gi|16503893|emb|CAD05922.1| glycine betaine-binding periplasmic protein precursor [Salmonella
enterica subsp. enterica serovar Typhi]
gi|29138705|gb|AAO70274.1| glycine betaine-binding periplasmic protein precursor [Salmonella
enterica subsp. enterica serovar Typhi str. Ty2]
gi|194711176|gb|ACF90397.1| glycine betaine-binding periplasmic protein [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
gi|197215469|gb|ACH52866.1| glycine betaine-binding periplasmic protein [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
gi|197288519|gb|EDY27896.1| glycine betaine-binding periplasmic protein [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
gi|204321417|gb|EDZ06617.1| glycine betaine-binding periplasmic protein [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|322614365|gb|EFY11296.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
315996572]
gi|322621570|gb|EFY18423.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-1]
gi|322624431|gb|EFY21264.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-3]
gi|322626629|gb|EFY23434.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-4]
gi|322633511|gb|EFY30253.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-1]
gi|322638446|gb|EFY35144.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-2]
gi|322639749|gb|EFY36433.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Montevideo str. 531954]
gi|322643795|gb|EFY40345.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322649481|gb|EFY45915.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
OH_2009072675]
gi|322655929|gb|EFY52229.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322661324|gb|EFY57549.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Montevideo str. 19N]
gi|322662522|gb|EFY58730.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
81038-01]
gi|322666896|gb|EFY63071.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
MD_MDA09249507]
gi|322671266|gb|EFY67389.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Montevideo str. 414877]
gi|322677727|gb|EFY73790.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Montevideo str. 366867]
gi|322681446|gb|EFY77476.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Montevideo str. 413180]
gi|322683845|gb|EFY79855.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Montevideo str. 446600]
gi|323193766|gb|EFZ78969.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
609458-1]
gi|323197446|gb|EFZ82583.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
556150-1]
gi|323203261|gb|EFZ88290.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Montevideo str. 609460]
gi|323205207|gb|EFZ90182.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
507440-20]
gi|323212780|gb|EFZ97591.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Montevideo str. 556152]
gi|323218078|gb|EGA02790.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB101509-0077]
gi|323221659|gb|EGA06072.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB102109-0047]
gi|323225127|gb|EGA09378.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB110209-0055]
gi|323230841|gb|EGA14959.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB111609-0052]
gi|323234808|gb|EGA18894.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009083312]
gi|323238847|gb|EGA22897.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009085258]
gi|323241547|gb|EGA25578.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
315731156]
gi|323248306|gb|EGA32242.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2009159199]
gi|323252928|gb|EGA36762.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008282]
gi|323256950|gb|EGA40659.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008283]
gi|323260575|gb|EGA44186.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008284]
gi|323264367|gb|EGA47873.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008285]
gi|323269501|gb|EGA52954.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008287]
Length = 331
Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats.
Identities = 43/321 (13%), Positives = 90/321 (28%), Gaps = 37/321 (11%)
Query: 4 ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKL 61
I A + ++A D V+ + ++ + T + S LE LGY
Sbjct: 6 IFASAFATLVTASAFAADLPGKGITVQPIQSTISEESFQTLLVSRALE-KLGYTVNKPSE 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V + S+ + W P + A + + GA ++
Sbjct: 65 VDYNVGYTSIASGDATFTAVNWQPLHDDMYAAAGGDKKFYREGVFVSGAAQGYLIDKKTA 124
Query: 122 ALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ I + A + G PG I K +
Sbjct: 125 EQYNITNIAQLKDPKIAKIFDTNGDGKADMMGCSPGWGCEAVINHQNKAFDL-QKTVEVS 183
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI-------------- 218
+ A + + P ++ +W P+ ++ + ++
Sbjct: 184 HGNYAAMMADTITRFKEGKPVLYYTWTPYWVSDVMKPGKDVVWLQVPFSSLPGEQKNIDT 243
Query: 219 -------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQF 271
GF +++ V + +K P ++L +K +A N ++ K
Sbjct: 244 KLPNGANYGFPVNTMHIVANKAWAEKNPAAAKLFAIMKLPLADINAQNAMMHAGKSSEAD 303
Query: 272 V---GRTMLRTHPDLLKNWLI 289
V + H W+
Sbjct: 304 VQGHVDGWINAHQQQFDGWVK 324
>gi|221068273|ref|ZP_03544378.1| Substrate-binding region of ABC-type glycine betaine transport
system [Comamonas testosteroni KF-1]
gi|220713296|gb|EED68664.1| Substrate-binding region of ABC-type glycine betaine transport
system [Comamonas testosteroni KF-1]
Length = 348
Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats.
Identities = 36/286 (12%), Positives = 75/286 (26%), Gaps = 34/286 (11%)
Query: 36 TDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPY 94
+ T + S L + LGY+ +K L ++ +W P F
Sbjct: 58 DEEMFQTLLVSRAL-QKLGYRVQPVKSLENGTQHVAVAQGDATFTATHWMPLHRAFYESN 116
Query: 95 LEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD---------IAKYKKELGAKIYGI 145
+ + + A ++ + + + A + G
Sbjct: 117 GADKAFYRAGTYSRNAVQGYLIDKATAEKYHITSITQLKDPKLAALFDTDGDGKADLTGC 176
Query: 146 EPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPIN- 204
PG I + + + A + +N P ++ W P +N
Sbjct: 177 NPGWGCELAINKHLKGLDLE-SSITHRQGNYQALIADTITRYKNGKPILYYVWTPFWVNT 235
Query: 205 ------------------SDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLK 246
+ + GF Y + + +K P ++L
Sbjct: 236 VLRPGKEVSWLEVPNVPGAQGEDQTQLPNGKNYGFKLNQQYILANKAWAEKNPAAAKLFA 295
Query: 247 NIKFSVALENEMMKLILNNKQDRQFVGRT---MLRTHPDLLKNWLI 289
++ + N + + VGR ++ H WL
Sbjct: 296 VMQLPIEDINAQNMRMRQGESSEADVGRHVDGWIKAHQQTFDGWLE 341
>gi|317009172|gb|ADU79752.1| osmoprotection protein (proWX) [Helicobacter pylori India7]
Length = 553
Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats.
Identities = 33/278 (11%), Positives = 81/278 (29%), Gaps = 31/278 (11%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL---AVPVTFRSLKNKGID 77
+A P+ A ++ + S++LE+ +L D
Sbjct: 283 NATEEKPLVVATKPSSEQYILGEILSLLLEKH-HIPVKRAFGIGGGTMNIHPALIRGDFD 341
Query: 78 IFMGYWYPSLEKFIAP--------------YLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+++ Y + + Y +E ++ V Y LA++
Sbjct: 342 LYVEYTGTAWVNTLKNPLTQKVDFETIKKRYEKEFNLLWVGLLGFNNTYSLAISKEDAQK 401
Query: 124 GIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ + + +G E E ++ +F + +
Sbjct: 402 Y--AIETFSDLAFHSPNFDFGAEFDFFEREDAFKGLMKAYRF------HFRSLHEMDINL 453
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ ++ + +L++ L + VVR + + K P
Sbjct: 454 RYKSFESHKINALDVFTTDAQIKELDLKVLKDDKGFF--PNYQAGIVVRKEIVKKYPKAL 511
Query: 243 RLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
++L+ + KFS + ++ + K+ Q + L
Sbjct: 512 KILEKLNSKFSDEVMQDLNYQVDVLKKSPQIAAKDFLE 549
>gi|23097482|ref|NP_690948.1| glycine betaine ABC transporter [Oceanobacillus iheyensis HTE831]
gi|22775705|dbj|BAC11983.1| glycine betaine ABC transporter glycine betaine-binding protein
[Oceanobacillus iheyensis HTE831]
Length = 305
Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats.
Identities = 32/164 (19%), Positives = 64/164 (39%), Gaps = 1/164 (0%)
Query: 134 YKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPA 193
Y + + I GIEPG + L G+ L ++S A ++ + N P
Sbjct: 40 YSEAVEHTITGIEPGAGITVTTETAMEEYD-QLSGWELKQSSTAAMIVELEKAIENEEPI 98
Query: 194 VFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVA 253
V W PH + + + + + ++ R + ++ PN +L+ +SV
Sbjct: 99 VVTGWNPHWMFAKFDNLKYLEDPQNIYGDTEEIRSLAREGFEEENPNAYKLIDQFNWSVE 158
Query: 254 LENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQ 297
+M + + V + + +PD ++ W GV +G+
Sbjct: 159 DMESIMYESSETGKGIEEVAKQWVEDNPDKVEAWTEGVEDGNGE 202
Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 2/107 (1%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFM 80
+ + V T W A++ + + +L G++ I + V V F ++ N D +
Sbjct: 197 EDGNGETVELVSTPWDSERASSNVVAEVLRSK-GFEVKITDVDVAVVFEAIANGDADATL 255
Query: 81 GYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKS 127
W P+ + EG + N++GAK + V D I+
Sbjct: 256 AAWMPNTHRKFYE-SIEGQFVDMGANIEGAKLGIVVPDYMDIDSIED 301
>gi|23099146|ref|NP_692612.1| choline ABC transporter permease [Oceanobacillus iheyensis HTE831]
gi|22777374|dbj|BAC13647.1| choline ABC transporter permease [Oceanobacillus iheyensis HTE831]
Length = 508
Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats.
Identities = 38/297 (12%), Positives = 89/297 (29%), Gaps = 34/297 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKL 61
++ + L + + + + M +++EE + L
Sbjct: 215 LVMLAGVLIISVAPFILQQEREPDIVIGGKLGAEPEILMNMYKLLIEEETNLQVGLEPNL 274
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPY-----------------LEEGSIKLVA 104
P+ F +L+ IDI+ + + + EE +++L+
Sbjct: 275 GKTPMVFNALQEGSIDIYPEFTGTVIVSLLDEQAESNDSQAVYEQARDSIKEEFNLELLE 334
Query: 105 ENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK 163
Y +AV +++ D+ Y+ L D +
Sbjct: 335 PMEFNNTYAVAVTQELAEQYDLQTIGDLEAYQDNL---------TAGFTLEFNDRYDGYV 385
Query: 164 FSLKGFRLIEASELASFSQIRR-DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
+ + + + +R+ + V ++ +L + L E +
Sbjct: 386 GMQEVYDINFSDVKTMDPGLRQGAIESGEVDVIDAYATDSYMVELELVTLEDPENLF--P 443
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
++R D L++ P + +L + K + EM L+ + V R L
Sbjct: 444 PYQGAPLMREDTLEQYPELEAILNQLSGKITDQEMREMNYLVDYEDAAAEAVARDYL 500
>gi|28210129|ref|NP_781073.1| glycine/betaine transport system permease protein [Clostridium
tetani E88]
gi|28202565|gb|AAO35010.1| glycine/betaine transport system permease protein [Clostridium
tetani E88]
Length = 512
Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats.
Identities = 40/297 (13%), Positives = 82/297 (27%), Gaps = 31/297 (10%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
I + S + + + + + +L+ K
Sbjct: 221 IALSTCIILIISFGIFNYRKKANTIVIGSKDYVEQEVLGNLMAEMLKNHTDLNVETKFQL 280
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPS----------------LEKFIAPYLEEGSIKLVAE 105
V ++K IDI+ Y + +E +++ +
Sbjct: 281 GGSSVVVEAIKKGDIDIYPEYTGVGLMYVLKLPHDSDTDRVYNTVKKGFKDEMNLEFLKP 340
Query: 106 NLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKF 164
Y +AV +K DIA L + + +L +
Sbjct: 341 FGYNNTYAVAVRKDTAQEYDLKKVSDIANVSNNLKSGFTV--SFVDRQDGLLGLEKTYGL 398
Query: 165 SLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEA 224
K +++ +S + N V ++ + L++ L + +
Sbjct: 399 --KFKEVLKMDSGVRYSSLI----NKQTDVTDAFTTDGMLKSLDLVLLEDDKGVF--PPY 450
Query: 225 SVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
V++S+ L+K P I +L + K S EM + Q LR
Sbjct: 451 YAAPVIKSETLEKYPEIEEILNRLADKISEKDMIEMNYNVDELGMTAQQSAINFLRK 507
>gi|55821314|ref|YP_139756.1| choline/proline/glycine betaine ABC uptake transporter substrate
binding protein [Streptococcus thermophilus LMG 18311]
gi|55823226|ref|YP_141667.1| proline/glycine betaine ABC transporter membrane-spanning protein
[Streptococcus thermophilus CNRZ1066]
gi|55737299|gb|AAV60941.1| choline/proline/glycine betaine ABC uptake transporter substrate
binding protein [Streptococcus thermophilus LMG 18311]
gi|55739211|gb|AAV62852.1| proline/glycine betaine ABC transporter membrane-spanning protein
[Streptococcus thermophilus CNRZ1066]
Length = 305
Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats.
Identities = 46/308 (14%), Positives = 94/308 (30%), Gaps = 40/308 (12%)
Query: 2 YKILAVCLFLTTFSISYA-----------RDADSCTPVRFADTGWTDIAATTAMTSVILE 50
K+ L + + + +R +T+ + ++ LE
Sbjct: 4 KKLFLGILLAIIIGVVTGFIFVGKHSHNVNSSKTNATIRIGSKDFTENLVVAEIYALALE 63
Query: 51 EILGYKTNIKLL-AVPVTFRSLKNKGIDIFMGYWYPS----------------LEKFIAP 93
+ GYK + + RSL NK ID++ Y E
Sbjct: 64 DN-GYKVQRVSNISSSLIHRSLINKEIDLYPEYTGTGLLSILKEPMETDSQKVYETVKKD 122
Query: 94 YLEEGSIKLVAENLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKKELGAKIYGIEPGNEGN 152
Y ++ + + L + GIK+ D+ ++ EL G ++
Sbjct: 123 YEKKFKVTWLKYASANDGQGLVIRTDIANQLGIKTISDLQRHASELNFASQG--EFDQRE 180
Query: 153 QRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYL 212
+ + ++S++ S N V ++ + + YL
Sbjct: 181 DGLPGLAKIYGDFSW-----KSSKVYDNSLKYTVLDNKEADVTPAYTTEGQLINTD-KYL 234
Query: 213 PGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQ 270
++ + ++ +VR D L P I L I K A ++ + Q+ Q
Sbjct: 235 LLKDDKHFWPPYNLAPIVRDDVLKSNPKIESTLNKISKKLDTATVTKLNAKVDVEGQNYQ 294
Query: 271 FVGRTMLR 278
V + +
Sbjct: 295 KVAQDFYK 302
>gi|161615706|ref|YP_001589671.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Paratyphi B str. SPB7]
gi|161365070|gb|ABX68838.1| hypothetical protein SPAB_03491 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 331
Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats.
Identities = 43/321 (13%), Positives = 90/321 (28%), Gaps = 37/321 (11%)
Query: 4 ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKL 61
I A + ++A D V+ + ++ + T + S LE LGY
Sbjct: 6 IFASAFATLVTASAFAADLPGKGITVQPIQSTISEESFQTLLVSRALE-KLGYTVNKPSE 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V + S+ + W P + A + + GA ++
Sbjct: 65 VDYNVGYTSIASGDATFTAVNWQPLHDDMYAAAGGDKKFYREGIFVSGAAQGYLIDKKTA 124
Query: 122 ALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ I + A + G PG I K +
Sbjct: 125 EQYNITNIAQLKDPKIAKIFDTNGDGKADMMGCSPGWGCEAVINHQNKAFDL-QKTVEVS 183
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI-------------- 218
+ A + + P ++ +W P+ ++ + ++
Sbjct: 184 HGNYAAMMADTITRFKEGKPVLYYTWTPYWVSDVMKPGKDVVWLQVPFSSLPGEQENIDT 243
Query: 219 -------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQF 271
GF +++ V + +K P ++L +K +A N ++ K
Sbjct: 244 KLPNGANYGFPVNTMHIVANKAWAEKNPAAAKLFAIMKLPLADINAQNAMMHAGKSSEAD 303
Query: 272 V---GRTMLRTHPDLLKNWLI 289
V + H W+
Sbjct: 304 VQGHVDGWINAHQQQFDGWVK 324
>gi|329907287|ref|ZP_08274604.1| L-proline glycine betaine binding ABC transporter protein ProX /
Osmotic adaptation [Oxalobacteraceae bacterium IMCC9480]
gi|327547037|gb|EGF31924.1| L-proline glycine betaine binding ABC transporter protein ProX /
Osmotic adaptation [Oxalobacteraceae bacterium IMCC9480]
Length = 336
Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats.
Identities = 40/322 (12%), Positives = 85/322 (26%), Gaps = 38/322 (11%)
Query: 4 ILAVCLFLTTFSISYARD--ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IK 60
L L +F+ + V+ + T + L + LGY K
Sbjct: 9 FLGTVLLAMSFATPASAADLPGKGIKVQPLQNTIAEATFQTLLVVKGL-QKLGYDVQSTK 67
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+A P ++ N +W P F + + + ++
Sbjct: 68 EIAPPTAHIAIANGDATFMADHWNPLHADFYRNAGGDAKLSRTGVYSDNSAQGYLIDKAT 127
Query: 121 FALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
+ + + A + G +PG I + K
Sbjct: 128 ATKYKITNIGQFTDPKIAKLFDTDGDGKADLTGCDPGWGCEAVIEHQLTAFKLRDT-VTH 186
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHP----INSDLNIHYLPGGE----------- 216
+ S A + + P + +W P+ + ++ +L
Sbjct: 187 KQGSYSALIADTITRHKEGKPIFYYTWTPYWVSGVMVPGRDVVWLQVPFSSLPGEQAKID 246
Query: 217 ------EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQ 270
+ GF V ++D P +L +K + + + N +
Sbjct: 247 TKLSNGKNYGFVVNQQQIVANKAFVDANPAAGKLFSLMKLPMTDISAENMRMSNGEGSPA 306
Query: 271 FVGRT---MLRTHPDLLKNWLI 289
+ R ++ H L W+
Sbjct: 307 AIERHTDGWIKAHQALFDGWIA 328
>gi|301065482|ref|YP_003787505.1| binding-protein-dependent transport systems inner membrane protein
[Lactobacillus casei str. Zhang]
gi|300437889|gb|ADK17655.1| Binding-protein-dependent transport systems inner membrane
component:Substrate-binding region of ABC-type glycine
betaine transport system [Lactobacillus casei str.
Zhang]
Length = 509
Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats.
Identities = 43/296 (14%), Positives = 84/296 (28%), Gaps = 20/296 (6%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEI---LGYKTNIK 60
L V + L + Y V A ++ M ++E+
Sbjct: 212 TLGVIICLPVVGMIYQNVHPVSRTVTIAGKMGSEPDILINMYKDLIEQAAPQTKVVLKPN 271
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQ-----GAKYMLA 115
F +LK + +DI+ + LE + P ++ + + L K+
Sbjct: 272 FGQTSFLFNALKTQKVDIYPEFTGTVLESLVKPSKQQRQLGVPGARLYKYAAQDLKHQFQ 331
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGI--------EPGNEGNQRILDMINNNKFSLK 167
+ + +Y + K I I E + LD + K
Sbjct: 332 MTYLAPMAYNNTYAVVIKRSYAQAHGITTISDLQRVQSELLGGFDLEFLDRTDGYKGLQA 391
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
+ L ++ +N + + ++ L F
Sbjct: 392 TYGLNFKTQSIDPGLRYEALKNGKINLTDGYSTDSQIRQFDLIALTD--NRHQFPVYQGA 449
Query: 228 TVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTHP 281
++ + + K P I + L + K S EM + +Q V + L TH
Sbjct: 450 PLMNTSFAAKNPEIVQALNKLANKISETDMQEMNYEVNVKQQSAATVAKHYLVTHQ 505
>gi|88801195|ref|ZP_01116737.1| ABC superfamily (glycine/betaine/proline transport protein)
[Reinekea sp. MED297]
gi|88776069|gb|EAR07302.1| ABC superfamily (glycine/betaine/proline transport protein)
[Reinekea sp. MED297]
Length = 328
Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats.
Identities = 40/323 (12%), Positives = 95/323 (29%), Gaps = 36/323 (11%)
Query: 1 MYKILAVCLFLTTFSISYARD---ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M +++A+ SI+ + D V + + + T + + LEE LGY
Sbjct: 1 MKRVIALTTLAAAVSINVSADGHLPGEGVEVVPVQSAIAEESFQTIVVNKALEE-LGYDV 59
Query: 58 -NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+I+ + + S+ N W+P A + + GA +
Sbjct: 60 QDIREVDYSAGYTSIANGDATYMAVNWFPLHNGMYANAGGDDVFYRKGHYISGAAQGYLI 119
Query: 117 NDVGFALGIKSYQDIAKYKK---------ELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
+ + K + + A + G + G I ++
Sbjct: 120 DKATADEYGIDNIEDFKDPEIAALFDTNGDGKADLTGCQAGWGCEGVIEHQLDAFDLRDT 179
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEEISGFGE 223
+ A S + + +W P+ ++ ++ +L + G
Sbjct: 180 -ISHNQGQYAAIISDTIARYNDGESVFYYTWTPYWVSGKLVPGEDVVWLEVPFSANPNGS 238
Query: 224 ASV--------------YTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI---LNNK 266
+ V ++ P ++L + K + + LI +++
Sbjct: 239 DTELANGKNYGFEINSERIVANKEFAMANPAAAKLFEVAKLPINDVSAQNGLIANGEDSQ 298
Query: 267 QDRQFVGRTMLRTHPDLLKNWLI 289
+ ++ + D W+
Sbjct: 299 AQIEQHAENWIKANQDTFDAWIE 321
>gi|297618963|ref|YP_003707068.1| glycine betaine ABC transporter substrate-binding protein
[Methanococcus voltae A3]
gi|297377940|gb|ADI36095.1| Substrate-binding region of ABC-type glycine betaine transport
system [Methanococcus voltae A3]
Length = 330
Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats.
Identities = 44/264 (16%), Positives = 90/264 (34%), Gaps = 4/264 (1%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYW 83
+ T + ILE GY +I ++ + ++ + DI +
Sbjct: 66 ENRSMTIITTNLPVEIVKGEIVKQILENN-GYTVSISQMSTDDMYSTVYSGDADIMLSGS 124
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIY 143
YP+ + A ++ V EN++ + LAVN + G+KS D+ + + I
Sbjct: 125 YPTTDSSFAGKY-SNNLSKVKENVEDSWIGLAVNKNAYDNGVKSIDDLKNHSEMFDNTIV 183
Query: 144 GIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPI 203
+E + + + + + ++ + NN VF++WEP +
Sbjct: 184 CLEENTGVAENTKSALTTYGL--SNYTIKYVNPKELYALVDEANANNEDIVFVAWEPSAL 241
Query: 204 NSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLIL 263
+ L E I + TV R + R LK + S + N +
Sbjct: 242 FEKYPVEKLADNEHIYAGKYDKITTVSRPEMYVWDYEAYRFLKEFQVSKDVANSWAVEYV 301
Query: 264 NNKQDRQFVGRTMLRTHPDLLKNW 287
+ + + + + + W
Sbjct: 302 YENKSAEEIASKWIDANQYEVDEW 325
>gi|282901071|ref|ZP_06309004.1| Substrate-binding region protein of ABC-type glycine betaine
transport system [Cylindrospermopsis raciborskii CS-505]
gi|281194162|gb|EFA69126.1| Substrate-binding region protein of ABC-type glycine betaine
transport system [Cylindrospermopsis raciborskii CS-505]
Length = 542
Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats.
Identities = 27/272 (9%), Positives = 66/272 (24%), Gaps = 29/272 (10%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGIDIFMGYWY 84
+ +T+ + + +E + K V ++K I ++ Y
Sbjct: 276 TITIGSKNFTEQVILGEILAQQIENNTQLRVERKFNLGGTFVCHEAVKAGKIAGYVEYTG 335
Query: 85 PSLEKFIAP----------------YLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSY 128
+ + Y E+ + ++ Y L +
Sbjct: 336 TAFTAILKEKPITDPQAVYEKTKQAYQEKYKLTMMPSLGFENNYALIIRSEDAKKWQVKN 395
Query: 129 QDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQR 188
+G E E + + + + +
Sbjct: 396 LSQIASYSNQLKAGFGYE-FLERADGYPGLSKTYQLQFADIK------QMELGLMYEALK 448
Query: 189 NNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI 248
+ + + L++ L ++ V L+K P + + +
Sbjct: 449 QKQVDLIAANSTDGLIPVLDLVILADDKKYF--PPYQAVPVFNQQILEKYPELEPAINQL 506
Query: 249 --KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
K S +M + N + V R L+
Sbjct: 507 VGKISTTQMQKMNYQVDNQSLAVEDVVREWLK 538
>gi|330955628|gb|EGH55888.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae Cit 7]
Length = 214
Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats.
Identities = 42/222 (18%), Positives = 82/222 (36%), Gaps = 10/222 (4%)
Query: 69 RSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSY 128
+++ +D+ + W P ++ + N + AK L V + A I+
Sbjct: 1 QAVATDKLDLMLSAWLPGTHGEYYAKYKD-QVVNYGPNFKDAKIGLIVPEYVKAKTIEDL 59
Query: 129 QDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQR 188
K KI GI+ G+ + I + G++L +S +++ R ++
Sbjct: 60 ----KTDASFNKKITGIDAGSGVMLKTDQAIKDYGLD--GYKLQASSGAGMIAELTRAEK 113
Query: 189 NNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI 248
V W PH + + + +L + + G E +V V K P + LK
Sbjct: 114 AKKSIVVTGWVPHWMFAKWKLRFLDDPKGVYGEAE-TVDNVGSLGLEKKAPEVVAFLKKF 172
Query: 249 KF-SVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
++ S E+M I + + + + HPD + W
Sbjct: 173 QWASKDEIGEVMLAI-QDGAKPEAAAKDWVAKHPDRVAAWTA 213
>gi|288905485|ref|YP_003430707.1| proline/glycine betaine ABC transporter substrate-binding protein
[Streptococcus gallolyticus UCN34]
gi|288732211|emb|CBI13776.1| Putative proline/glycine betaine ABC transporter substrate-binding
protein [Streptococcus gallolyticus UCN34]
Length = 306
Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats.
Identities = 45/306 (14%), Positives = 96/306 (31%), Gaps = 40/306 (13%)
Query: 2 YKILAVCLFLTTFSIS-----------YARDADSCTPVRFADTGWTDIAATTAMTSVILE 50
K+++ L + + S T +R +T+ + ++ LE
Sbjct: 4 KKLISGALLVVILVAIVGGIWAWRNNQSSEAQQSSTTIRVGSKDFTENLVIAEIYALALE 63
Query: 51 EILGYKTNIKLL-AVPVTFRSLKNKGIDIFMGYWYPSLEKFI----------------AP 93
+ GY + + S+ N ID++ Y L +
Sbjct: 64 DN-GYTVERVSNISSSLIHNSIVNDEIDLYPEYTGTGLLSVLGEDMETDPEKVYKIVKKE 122
Query: 94 YLEEGSIKLVAENLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKKELGAKIYGIEPGNEGN 152
Y E+ ++ + L + IK+ D+ + EL G +E
Sbjct: 123 YEEQFNLTWLDYASANDSQGLVIRTEVANSLNIKTISDLQAHASELRFASQG--EFDERE 180
Query: 153 QRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYL 212
+ + ++S++ S N+ V ++ + + L
Sbjct: 181 DGLPGLEKTYGTFNW-----QSSKVYDNSLKYSVLENDEADVTPAYTTEGQLVNTDEFTL 235
Query: 213 PGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQ 270
++ + ++ VVR + LD P+I +L NI K E+ + + Q+
Sbjct: 236 LEDDKQF-WPPYNLAPVVRDNILDDNPDIKTILNNISAKLDTETVTELNAKVDVDGQEYT 294
Query: 271 FVGRTM 276
V +
Sbjct: 295 DVAKEY 300
>gi|317048193|ref|YP_004115841.1| glycine betaine ABC transporter substrate-binding protein [Pantoea
sp. At-9b]
gi|316949810|gb|ADU69285.1| Substrate-binding region of ABC-type glycine betaine transport
system [Pantoea sp. At-9b]
Length = 308
Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats.
Identities = 44/286 (15%), Positives = 89/286 (31%), Gaps = 33/286 (11%)
Query: 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL-AVPVTFRSLKNKGID 77
++ A + TP+ A +T+ +AMT + L++ G++ K A + ++ NK ID
Sbjct: 25 SQMAAAATPLVMATKSFTEQHILSAMTVMWLQKK-GFQVIPKTNIATTIGRNAMINKQID 83
Query: 78 IFMGYWYPS---------------LEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
+ Y S + + + + Y A+
Sbjct: 84 MTWEYTGTSLIIFNHITKPMSSQEAYDTVKQLDGKLGLVWLDPAPMNNTYAFAMQRARAD 143
Query: 123 LGIKSYQ--------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
S I K + K+ + ++ + L ++ +
Sbjct: 144 KEGISTMSQLVAKLEQIRKTDPDHNWKLGLDLEFAGRSDGLVPLQKAYNMPLDRPQIRQM 203
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDY 234
+ + L + ++ L + F +V VVR D
Sbjct: 204 DPG----LVYNAVKEGFVDAGLIYTTDGRVKGFDLKVLED--DKHFFPSYNVTPVVRKDV 257
Query: 235 LDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLR 278
LD P ++ L + + EM K + + Q + V R L+
Sbjct: 258 LDSHPGLAEALNQLSPLITDEAITEMNKRVDIDHQSPEQVARDFLK 303
>gi|319936612|ref|ZP_08011025.1| glycine betaine/carnitine/choline transport system permease opucb
[Coprobacillus sp. 29_1]
gi|319808169|gb|EFW04734.1| glycine betaine/carnitine/choline transport system permease opucb
[Coprobacillus sp. 29_1]
Length = 520
Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats.
Identities = 31/302 (10%), Positives = 90/302 (29%), Gaps = 34/302 (11%)
Query: 3 KILAVCLFLTTFSI---SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN- 58
K + V L + +++S ++ +++ M ++E +
Sbjct: 225 KTIIVLTCLGLAGSFVYTNMGNSNSGQKIKIGSMDFSEQETLNYMLKYLIEGNSDVEVEQ 284
Query: 59 -IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFI----------------APYLEEGSIK 101
+ L + + ++K ID+++ Y + + + +
Sbjct: 285 ALSLGSSSIVLDAIKGGDIDMYIDYTGTIYGSILGLEPNSDVDEVYRTVKEEFQSQFHLT 344
Query: 102 LVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN 160
++ Y LA++ I++ D+ K K+L E L +
Sbjct: 345 VLDALGFNNTYTLAIDKDLAKKYNIETISDLCKVSKQLTFSPTL--TFMERKDCWLGLQK 402
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISG 220
+ K I+ S ++ V ++ + ++ L
Sbjct: 403 SYPIQFKNIIPIDGSPR------YTALTSHECDVIDAYSTDGLLKKFDLKVLKDDRSFFL 456
Query: 221 FGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLR 278
++ + P I ++ ++ + + ++ + K+ + V + L
Sbjct: 457 --PYHAIPIINERIEKEFPEIIPIVNQLQKYLNEDVMVDLNYRVDELKEKPKDVAKDFLI 514
Query: 279 TH 280
+
Sbjct: 515 KN 516
>gi|198244108|ref|YP_002216787.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|197938624|gb|ACH75957.1| glycine/betaine/proline transport protein [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
Length = 331
Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats.
Identities = 43/321 (13%), Positives = 89/321 (27%), Gaps = 37/321 (11%)
Query: 4 ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKL 61
I A + ++A D V+ + ++ T + S LE LGY
Sbjct: 6 IFASAFATLVTASAFAADLPGKGITVQPIQSTISEETFQTLLVSRALE-KLGYTVNKPSE 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V + S+ + W P + A + + GA ++
Sbjct: 65 VDYNVGYTSIASGDATFTAVNWQPLHDDMYAAAGGDNKFYREGVFVSGAAQGYLIDKKTA 124
Query: 122 ALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ I + A + G PG I K +
Sbjct: 125 EQYNITNIAQLKDPKIAKIFDTNGDGKADMMGCSPGWGCEAVINHQNKAFDL-QKTVEVS 183
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI-------------- 218
+ A + + P ++ +W P+ ++ + ++
Sbjct: 184 HGNYAAMMADTITLFKEGKPVLYYTWTPYWVSDVMKPGKDVVWLQVPFSSLPGEQKNIDT 243
Query: 219 -------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQF 271
GF +++ V + +K P ++L +K +A N ++ K
Sbjct: 244 KLPNGANYGFPVNTMHIVANKAWAEKNPAAAKLFAIMKLPLADINAQNAMMHAGKSSEAD 303
Query: 272 V---GRTMLRTHPDLLKNWLI 289
V + H W+
Sbjct: 304 VQGHVDGWINAHQQQFDGWVK 324
>gi|212696312|ref|ZP_03304440.1| hypothetical protein ANHYDRO_00849 [Anaerococcus hydrogenalis DSM
7454]
gi|212676941|gb|EEB36548.1| hypothetical protein ANHYDRO_00849 [Anaerococcus hydrogenalis DSM
7454]
Length = 295
Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats.
Identities = 33/175 (18%), Positives = 64/175 (36%), Gaps = 5/175 (2%)
Query: 123 LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ ++ + I GIEPG + + +L S
Sbjct: 23 NKTDNDKEEVNFDYAPNDYIIGIEPGAGAMDAANQAMEDYDLKQ---KLTTGSSAVMTQM 79
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ + P V W PH + ++ +L + G E ++T+ R + PN
Sbjct: 80 LGDAIKEKAPIVVTGWTPHWKFAKYDLKFLEDPKGSFGKPE-EIHTLARKGLKEDKPNAY 138
Query: 243 RLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQ 297
+LL N ++V E++ LN+ D + R + + D ++ GV +G+
Sbjct: 139 KLLDNFYWTVDDMQEVLVD-LNDGMDVKDAARKWVDNNQDRVQKMYEGVDRSNGE 192
Score = 60.2 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 20/109 (18%), Positives = 39/109 (35%), Gaps = 2/109 (1%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGY 82
+ + A W ++ + ILE+ G++ + + V F ++ +D+
Sbjct: 189 SNGEVISLAHATWDSELSSAYVLKNILED-YGFEVRMMAVEVGPLFAAIAYGSVDVTPSA 247
Query: 83 WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDI 131
W P K + I + NL+ AK V I+ +D
Sbjct: 248 WLPQTHKNYMKKYGDM-IDDLGPNLKNAKIGFVVPSYMEIDSIEDLKDY 295
>gi|56963756|ref|YP_175487.1| proline/glycine betaine ABC transporter permease [Bacillus clausii
KSM-K16]
gi|56909999|dbj|BAD64526.1| proline/glycine betaine ABC transporter permease [Bacillus clausii
KSM-K16]
Length = 524
Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats.
Identities = 43/298 (14%), Positives = 84/298 (28%), Gaps = 32/298 (10%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--L 61
+L V + + S + + + M ++E+ + L
Sbjct: 228 VLLVAIAIVAISPIASFIQSDEPDLVIGGKLGPEPPILANMYKHLIEQDTDLTVEVVAPL 287
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE-----------------EGSIKLVA 104
V F +L+ ID++ + L + E L+
Sbjct: 288 GETSVNFNALRVGDIDLYPEFTGTVLSDLLGTEDFSYHEQTSYEQARDGLLAEYGDVLLE 347
Query: 105 ENLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK 163
Y LA+ IK D++ Y +L + L
Sbjct: 348 PMAFQNTYALAMPREQAEQLNIKKISDLSPYATKLHVGF--SFEFMDRQDGYLGFEEAYG 405
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
FS + I+ S + N V + P ++ L + S F
Sbjct: 406 FSFEHVTSIDVSTR------YQAIANESIEVSDVFSTDPQLVQYDMVVLED--DQSLFPP 457
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+V +++ P + +L + SV +E+ + N +D V L+
Sbjct: 458 YQAAPLVSKKAIEEYPELESILNQLAGLGSVEEISELNYRVDINDEDPYQVAGEFLQE 515
>gi|224584595|ref|YP_002638393.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Paratyphi C strain
RKS4594]
gi|224469122|gb|ACN46952.1| glycine betaine-binding periplasmic protein precursor [Salmonella
enterica subsp. enterica serovar Paratyphi C strain
RKS4594]
Length = 327
Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats.
Identities = 43/321 (13%), Positives = 90/321 (28%), Gaps = 37/321 (11%)
Query: 4 ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKL 61
I A + ++A D V+ + ++ + T + S LE LGY
Sbjct: 2 IFASAFATLVTASAFAADLPGKGITVQPIQSTISEESFQTLLVSRALE-KLGYTVNKPSE 60
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V + S+ + W P + A + + GA ++
Sbjct: 61 VDYNVGYTSIASGDATFTAVNWQPLHDDMYAAAGGDNKFYREGVFVSGAAQGYLIDKKTA 120
Query: 122 ALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ I + A + G PG I K +
Sbjct: 121 EQYNITNIAQLKDPKIAKIFDTNGDGKADMMGCSPGWGCEAVINHQNKAFDL-QKTVEVS 179
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI-------------- 218
+ A + + P ++ +W P+ ++ + ++
Sbjct: 180 HGNYAAMMADTITRFKEGKPVLYYTWTPYWVSDVMKPGKDVVWLQVPFSSLPGEQKNIDT 239
Query: 219 -------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQF 271
GF +++ V + +K P ++L +K +A N ++ K
Sbjct: 240 KLPNGANYGFPVNTMHIVANKAWAEKNPAAAKLFAIMKLPLADINAQNAMMHAGKSSEAD 299
Query: 272 V---GRTMLRTHPDLLKNWLI 289
V + H W+
Sbjct: 300 VQGHVDGWINAHQQQFDGWVK 320
>gi|254384330|ref|ZP_04999673.1| glycine betaine-binding lipoprotein [Streptomyces sp. Mg1]
gi|194343218|gb|EDX24184.1| glycine betaine-binding lipoprotein [Streptomyces sp. Mg1]
Length = 321
Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats.
Identities = 44/289 (15%), Positives = 97/289 (33%), Gaps = 17/289 (5%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKG 75
S DA V + W A A+ +LE LGY+ + + + +L
Sbjct: 32 SSPYADAKGSRTVTLSVQSWVGAQANVAVAQYLLEHELGYRVDTVQIDEVPAWDALSQGR 91
Query: 76 IDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA--LGIKSYQDIAK 133
+D + W E+ ++G+I E V + ++++ K
Sbjct: 92 VDAILEDWG-HPEQEKRYIDDKGTIARGGELGVTGHIGWFVPTYFAEEHPDVTDWKNLNK 150
Query: 134 YKKELGAKIYGIEPG---NEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
Y +L G + + D N L + SE A +QIR+ +
Sbjct: 151 YADQLRTAESGGKGQLLDGSPSYVTNDKALVNNLDLDYQVVFAGSEAAQITQIRQFAKEK 210
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEE-----------ISGFGEASVYTVVRSDYLDKCP 239
P + ++P + + + + + + + + S +
Sbjct: 211 KPFLTYWYKPQWLFEKVPMTEVKLPDYKEGCDADAEKVACAYPHTPLQKFLNSRFAADGG 270
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+ + LK +++ ++N++ +I + K Q ++ + + WL
Sbjct: 271 DAAAFLKKFRWTTDMQNDVSLMIADQKLSPQEAAARWVKQNEATWRTWL 319
>gi|114764394|ref|ZP_01443620.1| ABC Glycine betaine/L-proline transporter, periplasmic ligand
binding protein [Pelagibaca bermudensis HTCC2601]
gi|114543148|gb|EAU46166.1| ABC Glycine betaine/L-proline transporter, periplasmic ligand
binding protein [Roseovarius sp. HTCC2601]
Length = 329
Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats.
Identities = 45/324 (13%), Positives = 98/324 (30%), Gaps = 37/324 (11%)
Query: 1 MYK--ILAVCLFLTTFSISYARD--ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
M++ I A + T S T VR + + LE+ LGY+
Sbjct: 1 MFRPNIFATLVATTCLSAPAMAQDMPGEGTTVRPIIGLIAEEMFQARVLFSALED-LGYE 59
Query: 57 T-NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
+ + + +L D + +W F + ++ V ++G
Sbjct: 60 VAEPQEVEIQTAHLALATGDGDFYPAHWETLQSAFFDESGGDDVLERVGPFIEGTLQGYL 119
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAK--------IYGIEPGNEGNQRILDMINNNKFSLK 167
V+ + G+ S D+ + G PG + I +
Sbjct: 120 VDKATYDAGVTSLGDLTDPDVAAKFDANGDGSADLAGCVPGWGCERVIEHHLEEYGLRDT 179
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP----INSDLNIHYLPGGE------- 216
+ S A + + N P ++ +W P+ + ++ +L
Sbjct: 180 -VTHNQGSYNAIMADVIARHENGDPILYYTWTPYWVSGALVPGEDVEWLEVPYTSLPDGV 238
Query: 217 --------EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQD 268
+ GF ++Y + D+L P ++L + + + + KL+ +
Sbjct: 239 EAETTFDGKNIGFAVDNIYILATDDFLADNPAAAKLFEVAQIKINDISAQNKLMADGADS 298
Query: 269 RQFV---GRTMLRTHPDLLKNWLI 289
+ + + + WL
Sbjct: 299 SDDIDQHVADWISENQETYDGWLE 322
>gi|319794069|ref|YP_004155709.1| substrate-binding region of ABC-type glycine betaine transport
system [Variovorax paradoxus EPS]
gi|315596532|gb|ADU37598.1| Substrate-binding region of ABC-type glycine betaine transport
system [Variovorax paradoxus EPS]
Length = 335
Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats.
Identities = 45/330 (13%), Positives = 95/330 (28%), Gaps = 43/330 (13%)
Query: 1 MY--KILAVCLFLTTFSISYARDADSCT-------PVRFADTGWTDIAATTAMTSVILEE 51
M ++L L ++ A + V+ + + A T + LE
Sbjct: 1 MKNTRLLIARAVLALGFVAIGATAQAANDLPGKGITVQPLKSSLAEEAFQTLLVMRALE- 59
Query: 52 ILGYKTN-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGA 110
LGY +K L ++ N +W F + + GA
Sbjct: 60 KLGYTVEPMKDLEPATEHLAIANGDATFMANHWSLLHADFYKNSGGDAKLSRTGVYSDGA 119
Query: 111 KYMLAVNDVGFALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINN 161
++ + + + A + G PG I + +
Sbjct: 120 VQGYLIDRKTAEQYNITNIAQLKDPAIAKLFDADGDGKADLTGCNPGWGCELAIENHLTA 179
Query: 162 NKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGE- 216
K + S A + + + P ++ +W P+ +++ ++ +L
Sbjct: 180 YKLRDT-VTHKQGSYAALMADTIARFKQDKPVLYYTWTPYWVSAVLRPGADVVWLQVPFS 238
Query: 217 --------------EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI 262
+ GF V +++K P +L + +K + N +
Sbjct: 239 SSQEGQADTRLPNGKNYGFQANREQIVANKAFVEKNPAAGKLFEVMKLPIGDINAQNLRM 298
Query: 263 LNN---KQDRQFVGRTMLRTHPDLLKNWLI 289
+QD + +R H L W+
Sbjct: 299 SQGANTQQDVERHADGWIRVHQQLFDGWIA 328
>gi|218548808|ref|YP_002382599.1| ABC transporter periplasmic binding protein [Escherichia fergusonii
ATCC 35469]
gi|218356349|emb|CAQ88967.1| putative ABC transporter periplasmic binding protein [Escherichia
fergusonii ATCC 35469]
Length = 300
Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats.
Identities = 39/305 (12%), Positives = 87/305 (28%), Gaps = 37/305 (12%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+ K L L ++ A P+ A G+T+ +AMT L++ G++ +
Sbjct: 3 LKKHLLGWLAAAFLLSGQSQAA----PIILATKGFTEQHILSAMTVQYLQKK-GFQVQPQ 57
Query: 61 LLAVPVT-FRSLKNKGIDIFMGYWYPS---------------LEKFIAPYLEEGSIKLVA 104
V ++ NK ID+ Y S + + +
Sbjct: 58 TNIAAVISRNAMLNKQIDVTWEYTGTSLIIYNHINKRMTPEESYATVKKLDARQGLVWLN 117
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQD--------IAKYKKELGAKIYGIEPGNEGNQRIL 156
Y A+ + + + + + + + +
Sbjct: 118 PADMNNTYAFAMQRERAEAENITTMSEMVAKIEHLRQTDPDNNWLLGLDLEFSGRSDGMK 177
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ L ++ + + R+ L + ++ L +
Sbjct: 178 PLQQTYVMELDRPQIRQMDPG----LVYNAVRDGFVDAGLVYTTDGRVKGFDLKVLEDDK 233
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGR 274
+V VVR + LD P ++ L + + + + + + Q Q V R
Sbjct: 234 GFF--PSYAVTPVVRKEILDANPGLADALNTLSGLLDNDIISTLNAKVDIDHQSPQQVAR 291
Query: 275 TMLRT 279
L+
Sbjct: 292 EFLQQ 296
>gi|314934506|ref|ZP_07841865.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Staphylococcus caprae
C87]
gi|313652436|gb|EFS16199.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Staphylococcus caprae
C87]
Length = 314
Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats.
Identities = 32/309 (10%), Positives = 80/309 (25%), Gaps = 35/309 (11%)
Query: 1 MYK--------ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEI 52
M K I L L+ S+ D ++ V+ T ++ M +++E
Sbjct: 1 MKKHMKYTVILIALSLLVLSGCSLPGLGDGNAKDDVKITTTETSETKIIGNMEKLMIEHE 60
Query: 53 LGYKTNIKL----LAVPVTFRSLKNKGIDIFMGYWY---------------PSLEKFIAP 93
K L + + +L+ +++ + P
Sbjct: 61 TNGKIKPTLIGNLGSSIIQHNALQRGDVNMSSVRYTGTELTSVLDAKPTKDPKKAMSETQ 120
Query: 94 YLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQ 153
L + + G A + ++ KK G++
Sbjct: 121 RLFKKKYDQKYYDSLGFANTYAFMVTKETAKKYHLEKVSDLKKYKDKLRLGMDTQWMNRA 180
Query: 154 RILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLP 213
+ K +++ + +N V + + + ++ L
Sbjct: 181 GDGYPAFVKDYGFKF----DSARPMQIGLVYDALKNKKLDVAVGYSTDGRIAAYDLKILK 236
Query: 214 GGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQF 271
+ + + P I + LK + K + ++ ++
Sbjct: 237 DDRKFF--PPYDGSPLATEKLIKDNPKIDKALKKLQGKINTKEMQKLNYEADGKGKEPAV 294
Query: 272 VGRTMLRTH 280
+ L+ H
Sbjct: 295 IAEEYLKKH 303
>gi|146312800|ref|YP_001177874.1| glycine betaine transporter periplasmic subunit [Enterobacter sp.
638]
gi|145319676|gb|ABP61823.1| Substrate-binding region of ABC-type glycine betaine transport
system [Enterobacter sp. 638]
Length = 331
Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats.
Identities = 41/317 (12%), Positives = 88/317 (27%), Gaps = 36/317 (11%)
Query: 7 VCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKLLAVP 65
L + S A V+ + ++ T + S LE LGY +
Sbjct: 10 AFATLVSTSTFAADLPGKGITVQPVQSTISEETFQTMIVSRALE-KLGYTVNKPSEVDYN 68
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
V + S+ + W P + A + GA ++
Sbjct: 69 VGYTSIASGDATFTAVNWKPLHDDMYAAAGGSKKFYREGTFVTGAAQGYLIDKKTAEKYH 128
Query: 126 KSYQD---------IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ + + + A + G PG I + +
Sbjct: 129 ITNIEQLKDPKIAKLFDTNGDGKADMMGCSPGWGCEAVINHQNKAFDLEKT-VDVSHGNY 187
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEE--------------- 217
A + + P ++ +W P+ ++ ++ +L
Sbjct: 188 SAMMADTIARFKEGKPVIYYTWTPYWVSDVLKPGKDVVWLQVPFSSLPGEQKDIDTKLPN 247
Query: 218 --ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNK---QDRQFV 272
GF +++ V + +K P ++L +K +A N ++ K + Q
Sbjct: 248 GMNYGFPVNTMHIVANKAWAEKNPAAAKLFSVMKLPLADINAQNAMMHEGKSSDANIQGH 307
Query: 273 GRTMLRTHPDLLKNWLI 289
++ H W+
Sbjct: 308 VDGWIKAHQQQFDGWVK 324
>gi|330882336|gb|EGH16485.1| glycine betaine/L-proline ABC transporter periplasmic
substrate-binding protein [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 292
Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats.
Identities = 42/296 (14%), Positives = 88/296 (29%), Gaps = 30/296 (10%)
Query: 9 LFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL-AVPVT 67
A +R +T+ + +T+ L GY + +
Sbjct: 2 FLGFALLFPAFAQAAEKPLLRVGARVFTEQTILSELTAQYLRTK-GYDVQVTGGLGSSLA 60
Query: 68 FRSLKNKGIDIFMGYWYPSLEKF---------------IAPYLEEGSIKLVAENLQGAKY 112
+ ++ +D+ Y SL + + + + ++ + Y
Sbjct: 61 RSAQESAQLDLIWEYTGVSLVNYNHVDEKLDSEQTYARVKELDAKKGLVWLSPSKFSNTY 120
Query: 113 MLAVNDVGFALG-----IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
LA+ + + K + + G + + +L M+ + +L
Sbjct: 121 ALALPQKVADKYPQVNTMTDLTKVLKDEAKEGHLVALDTEFANRSDGLLGMVKHYDMNLG 180
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
+ + RN L + + + L + F + +
Sbjct: 181 REN----TRQMDAGLVYTALRNGQVFAGLVYTTDGRLNAFKLKVLED--DKRYFPDYTAA 234
Query: 228 TVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRTHP 281
V+R DYLDK P+I+ LLK + ++ I + V LR HP
Sbjct: 235 PVIRQDYLDKHPDIAPLLKPLADLLDTQTMIDLNARIDVGHESPSKVAADFLRQHP 290
>gi|223042459|ref|ZP_03612508.1| glycine betaine/carnitine/choline-binding protein
(Osmoprotectant-binding protein) [Staphylococcus capitis
SK14]
gi|222444122|gb|EEE50218.1| glycine betaine/carnitine/choline-binding protein
(Osmoprotectant-binding protein) [Staphylococcus capitis
SK14]
Length = 314
Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats.
Identities = 32/309 (10%), Positives = 80/309 (25%), Gaps = 35/309 (11%)
Query: 1 MYK--------ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEI 52
M K I L L+ S+ D ++ V+ T ++ M +++E
Sbjct: 1 MKKHMKYTVILIALSLLVLSGCSLPGLGDGNAKDDVKITTTETSETKIIGNMEKLMIEHE 60
Query: 53 LGYKTNIKL----LAVPVTFRSLKNKGIDIFMGYWY---------------PSLEKFIAP 93
K L + + +L+ +++ + P
Sbjct: 61 TNGKIKPTLIGNLGSSIIQHNALQRGDVNMSSVRYTGTELTSVLDAKPTKDPKKAMSETQ 120
Query: 94 YLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQ 153
L + + G A + ++ KK G++
Sbjct: 121 RLFKKKYDQKYYDSLGFANTYAFMVTKETAKKYHLEKVSDLKKYKDKLRLGMDTQWMNRA 180
Query: 154 RILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLP 213
+ K +++ + +N V + + + ++ L
Sbjct: 181 GDGYPAFVKDYGFKF----DSARPMQIGLVYDALKNKKLDVAVGYSTDGRIAAYDLKILK 236
Query: 214 GGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQF 271
+ + + P I + LK + K + ++ ++
Sbjct: 237 DDRKFF--PPYDGSPLATEKLIKDNPKIDKALKKLQGKINTKEMQKLNYEADGKGKEPAV 294
Query: 272 VGRTMLRTH 280
+ L+ H
Sbjct: 295 IAEEYLKKH 303
>gi|295097268|emb|CBK86358.1| ABC-type proline/glycine betaine transport systems, periplasmic
components [Enterobacter cloacae subsp. cloacae NCTC
9394]
Length = 331
Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats.
Identities = 40/321 (12%), Positives = 92/321 (28%), Gaps = 37/321 (11%)
Query: 4 ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI-KL 61
+ A + + A D V+ + ++ + T + S LE LGY N
Sbjct: 6 LFATAFATLVSTSAVAADLPGKGITVQPVQSTISEESFQTQIVSRALE-KLGYTVNTASE 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V + S+ + W P + A + + GA ++
Sbjct: 65 VDYNVGYTSIASGDATFTAVNWQPLHDDMYAAAGGDKKFYREGTFVTGAAQGYLIDKKTA 124
Query: 122 ALGIKSYQD---------IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ + + + A + G PG I + +
Sbjct: 125 DKYHITNIEQLKDPKIAKLFDTNGDGKADMMGCSPGWGCEAVINHQNKAFDLAKT-VDVS 183
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEE----------- 217
+ A + + P ++ +W P+ ++ ++ +L
Sbjct: 184 HGNYSAMMADTIARFKEGKPVIYYTWTPYWVSDVLKPGKDVVWLQVPFSSLPGEQKDIDT 243
Query: 218 ------ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQF 271
GF +++ V + +K P ++L + +A N ++ K
Sbjct: 244 KLPNGMNYGFPVNTMHIVANKAWAEKNPAAAKLFSVMILPLADINAQNAMMHAGKSSEAD 303
Query: 272 V---GRTMLRTHPDLLKNWLI 289
+ ++ H W+
Sbjct: 304 IKGHVDGWIKAHQQQFDGWVK 324
>gi|324113371|gb|EGC07346.1| hypothetical protein ERIG_01789 [Escherichia fergusonii B253]
gi|325497214|gb|EGC95073.1| ABC transporter periplasmic binding protein [Escherichia fergusonii
ECD227]
Length = 300
Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats.
Identities = 39/305 (12%), Positives = 87/305 (28%), Gaps = 37/305 (12%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+ K L L ++ A P+ A G+T+ +AMT L++ G++ +
Sbjct: 3 LKKHLLGWLAAAFLLSGQSQAA----PIILATKGFTEQHILSAMTVQYLQKK-GFQVQPQ 57
Query: 61 LLAVPVT-FRSLKNKGIDIFMGYWYPS---------------LEKFIAPYLEEGSIKLVA 104
V ++ NK ID+ Y S + + +
Sbjct: 58 TNIAAVISRNAMLNKQIDVTWEYTGTSLIIYNHINKRMTPEESYATVKKLDARQGLVWLN 117
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQD--------IAKYKKELGAKIYGIEPGNEGNQRIL 156
Y A+ + + + + + + + +
Sbjct: 118 PADMNNTYAFAMQRERAEAENITTMSEMVAKIEHLRQTDPDNNWLLGLDLEFSGRSDGMK 177
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ L ++ + + R+ L + ++ L +
Sbjct: 178 PLQQTYAMELDRPQIRQMDPG----LVYNAVRDGFVDAGLVYTTDGRVKGFDLKVLEDDK 233
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGR 274
+V VVR + LD P ++ L + + + + + + Q Q V R
Sbjct: 234 GFF--PSYAVTPVVRKEILDANPGLADALNTLSGLLDNDIISTLNAKVDIDHQSPQQVAR 291
Query: 275 TMLRT 279
L+
Sbjct: 292 EFLQQ 296
>gi|167033693|ref|YP_001668924.1| glycine betaine transporter periplasmic subunit [Pseudomonas putida
GB-1]
gi|166860181|gb|ABY98588.1| Substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas putida GB-1]
Length = 342
Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats.
Identities = 40/300 (13%), Positives = 80/300 (26%), Gaps = 35/300 (11%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKLLAVPVTFRSLKNKGIDIFM 80
V + + L E LGY K V +L N D +
Sbjct: 33 PGDGVKVTPIFPSIAEERFRGEVAMEGLRE-LGYNVQEPKETEYGVMMVALANGDADFTV 91
Query: 81 GYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG---------IKSYQDI 131
W +KF + + L G ++ +
Sbjct: 92 HLWEKLHDKFYQQAGGDDVMVKTGNILPGVAQGYLIDKKTADQYNIKYITDLKKPEIAKL 151
Query: 132 AKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI 191
+ A + G PG I + + + S A + +
Sbjct: 152 FDTDGDGKADMTGCNPGWGCELVISHHMKAYDLDKS-VNVNQGSYFALMADTIARYKEGK 210
Query: 192 PAVFLSWEPHP----INSDLNIHYLPGGEEISGFGEASVYT----------------VVR 231
P ++ +W P + ++ +L + G+ V T V+
Sbjct: 211 PILYFTWVPQWIASVLVEGKDVVWLEVPKTDLPDGKNDVDTTYHGKNLGFAIDKVVAVLN 270
Query: 232 SDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV---GRTMLRTHPDLLKNWL 288
D+ +K P + L ++ S E+ + ++ + + + + H WL
Sbjct: 271 KDFAEKNPAALKFLSLVQISTDDESNQNLKMQQGEKKPKDIERHAKQWVAAHRQQFDQWL 330
>gi|200388671|ref|ZP_03215283.1| ABC family protein [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
gi|199605769|gb|EDZ04314.1| ABC family protein [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
Length = 331
Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats.
Identities = 43/321 (13%), Positives = 90/321 (28%), Gaps = 37/321 (11%)
Query: 4 ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKL 61
I A + ++A D V+ + ++ + T + S LE LGY
Sbjct: 6 IFASAFATLVTASAFAADLPGKGITVQPIQSTISEESFQTLLVSRALE-KLGYTVNKPSE 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V + S+ + W P + A + + GA ++
Sbjct: 65 VDYNVGYTSIASGDATFTAVNWQPLHDDMYAAAGGDNKFYREGVFVSGAAQGYLIDKKTA 124
Query: 122 ALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ I + A + G PG I K +
Sbjct: 125 EQYNITNIAQLKDPKIAKIFDTNGDGKADMMGCSPGWGCEAVINHQNKAFDL-QKTVEVS 183
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI-------------- 218
+ A + + P ++ +W P+ ++ + ++
Sbjct: 184 HGNYAAMMADTIIRFKEGKPVLYYTWTPYWVSDVMKPGKDVVWLQVPFSSLPGEQKNIDT 243
Query: 219 -------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQF 271
GF +++ V + +K P ++L +K +A N ++ K
Sbjct: 244 KLPNGANYGFPVNTMHIVANKAWAEKNPAAAKLFAIMKLPLADINAQNAMMHAGKSSEAD 303
Query: 272 V---GRTMLRTHPDLLKNWLI 289
V + H W+
Sbjct: 304 VQGHVDGWINAHQQQFDGWVK 324
>gi|183980067|ref|YP_001848358.1| hypothetical protein MMAR_0032 [Mycobacterium marinum M]
gi|183173393|gb|ACC38503.1| conserved hypothetical protein [Mycobacterium marinum M]
Length = 331
Score = 125 bits (314), Expect = 8e-27, Method: Composition-based stats.
Identities = 33/302 (10%), Positives = 76/302 (25%), Gaps = 34/302 (11%)
Query: 4 ILAVCLFLTTFSISYARDAD--------SCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
++A C + P+ A +T+ M S++L G
Sbjct: 29 LVASCGLRSATGAVLEAKPGLIRHYQSLEGVPITVAAKDFTEQLILGNMLSIVLHAA-GA 87
Query: 56 KTN--IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFI----------------APYLEE 97
+ R+L +I Y ++ +
Sbjct: 88 RVTNLSNTPGSFGVRRALLTGEANIAPEYTGTGWINYLGHENPIKGAKQQWEAVNAADQV 147
Query: 98 GSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILD 157
+ + Y LA+ + + K N +
Sbjct: 148 NGLTWLPPAPMNNTYTLAIRESEAERLGVTKLSDLKRLPRSALTFCIESEFASRNDGFVP 207
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
M++ L+ I + + + L++ L +
Sbjct: 208 MLHAYGLDLEDLAKITTLDTGV---VYSATAQGECNFGEVFTTDGRIPALHLRLLED--D 262
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
F ++ VV + ++ P + + + + + E+ + NN +D V +
Sbjct: 263 KHFFPLYNLTEVVDTSLINDHPELREIFAQLNPRLTNDTMRELNAQVDNNGRDPAIVAKD 322
Query: 276 ML 277
L
Sbjct: 323 WL 324
>gi|325978474|ref|YP_004288190.1| proline/glycine betaine ABC transport system,periplasmic component
[Streptococcus gallolyticus subsp. gallolyticus ATCC
BAA-2069]
gi|325178402|emb|CBZ48446.1| proline/glycine betaine ABC transport system,periplasmic component
[Streptococcus gallolyticus subsp. gallolyticus ATCC
BAA-2069]
Length = 306
Score = 125 bits (313), Expect = 8e-27, Method: Composition-based stats.
Identities = 45/306 (14%), Positives = 96/306 (31%), Gaps = 40/306 (13%)
Query: 2 YKILAVCLFLTTFSIS-----------YARDADSCTPVRFADTGWTDIAATTAMTSVILE 50
K+++ L + + S T +R +T+ + ++ LE
Sbjct: 4 KKVISGALLVVILVAIVGGIWAWRNNQSSEAQQSSTTIRVGSKDFTENLVIAEIYALALE 63
Query: 51 EILGYKTNIKLL-AVPVTFRSLKNKGIDIFMGYWYPSLEKFI----------------AP 93
+ GY + + S+ N ID++ Y L +
Sbjct: 64 DN-GYTVERVSNISSSLIHNSIVNDEIDLYPEYTGTGLLSVLGEDMETDPEKVYKIVKKE 122
Query: 94 YLEEGSIKLVAENLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKKELGAKIYGIEPGNEGN 152
Y E+ ++ + L + IK+ D+ + EL G +E
Sbjct: 123 YEEQFNLTWLDYASTNDSQGLVIRTEVANSLNIKTISDLQAHASELRFASQG--EFDERE 180
Query: 153 QRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYL 212
+ + ++S++ S N+ V ++ + + L
Sbjct: 181 DGLPGLEKTYGTFNW-----QSSKVYDNSLKYSVLENDEADVTPAYTTEGQLVNTDEFTL 235
Query: 213 PGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQ 270
++ + ++ VVR + LD P+I +L NI K E+ + + Q+
Sbjct: 236 LEDDKQF-WPPYNLAPVVRDNILDDNPDIKTILNNISAKLDTETVTELNAKVDVDGQEYT 294
Query: 271 FVGRTM 276
V +
Sbjct: 295 DVAKEY 300
>gi|227515094|ref|ZP_03945143.1| glycine/betaine ABC superfamily ATP binding cassette transporter
substrate binding protein [Lactobacillus fermentum ATCC
14931]
gi|227086542|gb|EEI21854.1| glycine/betaine ABC superfamily ATP binding cassette transporter
substrate binding protein [Lactobacillus fermentum ATCC
14931]
Length = 324
Score = 125 bits (313), Expect = 9e-27, Method: Composition-based stats.
Identities = 40/306 (13%), Positives = 97/306 (31%), Gaps = 34/306 (11%)
Query: 1 MYK-------ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL 53
M K +AV + A+S TP+ +T+ + + ++ LE+
Sbjct: 25 MRKWVRRLVATVAVTALGALALPTTGFAANSKTPIIVGSKSFTESKVVSEIYALALEKA- 83
Query: 54 GYKTNIKLL-AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP----------------YLE 96
GYK K + V F++++ ID++ Y ++ ++ +
Sbjct: 84 GYKVTRKQNISNSVVFKAVQTGQIDVYPEYTGTIVDAYLKQSTTNKNAKQIAAAAKKGVA 143
Query: 97 EGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
+ + + +AV + KK + ++ +
Sbjct: 144 KYKLTTLTPAPGNDSQGIAVTTKVAKKYGLYTISDLQ-KKANKIRFVSQGEFDQRADALP 202
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
M+ ++S+ S + ++ N Y +
Sbjct: 203 GMVKKYGKFD-----FKSSKDYDDSLKYKILSEGKGDAAPVSTTDGQLANGN-KYTLLKD 256
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ + ++ +VR+ L P +++ L + K + E+ K + + Q+ Q V +
Sbjct: 257 DKHLWPAYNLVPLVRNSTLKSHPKMAKALNQVDKKLTTKTLTELNKKVDVDGQNYQTVAK 316
Query: 275 TMLRTH 280
+
Sbjct: 317 NWFNKN 322
>gi|297584208|ref|YP_003699988.1| glycine betaine ABC transporter substrate-binding protein [Bacillus
selenitireducens MLS10]
gi|297142665|gb|ADH99422.1| Substrate-binding region of ABC-type glycine betaine transport
system [Bacillus selenitireducens MLS10]
Length = 517
Score = 125 bits (313), Expect = 9e-27, Method: Composition-based stats.
Identities = 34/290 (11%), Positives = 81/290 (27%), Gaps = 17/290 (5%)
Query: 5 LAVCLFLT-TFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKL 61
LA+ + L+ T ++ D + A + M +++E Y+
Sbjct: 224 LALLIVLSPTVFQAFQFSDDGPDEIVIAGKLGAEPEIIINMYKLLIEAETDYEVVLEDGF 283
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKY---MLAVND 118
TF +L+ ID + + ++ + + E + Y +
Sbjct: 284 GTTDFTFEALRAGEIDGYFEFTGTAIVNLLNEEPVSNEERPAFEQARDGMYEAFGFVFLE 343
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYG------IEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ ++ + + G E +D + + L
Sbjct: 344 PMAYQNTYAIAVTEEFAETHDLETIGDLRPIEDEITAAFTFEFIDRDDGYPGIQDAYDLD 403
Query: 173 EASELASFSQIRR-DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVR 231
A+ +R + V ++ ++ L + F + + R
Sbjct: 404 FANVQGMDPGLRADAVESGDVQVTDAYSTDSYMIRYSLVALED--DEHVFPPFNGAPLFR 461
Query: 232 SDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+ L P I +L + + +M + ++ V R L
Sbjct: 462 EEVLLAYPEIEDVLNQLGGMITEEEMLQMNYQVDEEDRNAVDVAREYLEE 511
>gi|197263789|ref|ZP_03163863.1| glycine betaine-binding periplasmic protein [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA23]
gi|197242044|gb|EDY24664.1| glycine betaine-binding periplasmic protein [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA23]
Length = 331
Score = 125 bits (313), Expect = 9e-27, Method: Composition-based stats.
Identities = 43/321 (13%), Positives = 90/321 (28%), Gaps = 37/321 (11%)
Query: 4 ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKL 61
I A + ++A D V+ + ++ + T + S LE LGY
Sbjct: 6 IFASAFATLVTASAFAADLPGKGITVQPIQSTISEESFQTLLVSRALE-KLGYTVNKPSE 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V + S+ + W P + A + + GA ++
Sbjct: 65 VDYNVGYTSIASGDATFTAVNWQPLHDDMYAAAGGDKKFYREGVFVSGAAQGYLIDKKTA 124
Query: 122 ALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ I + A + G PG I K +
Sbjct: 125 EQYNITNIAQLKDPKIAKIFDTNGDGKADMMGCSPGWGCEAVINHQNKAFDL-QKTVEVS 183
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI-------------- 218
+ A + + P ++ +W P+ ++ + ++
Sbjct: 184 HGNYAAMMADTITRFKEGKPVLYYTWTPYWVSDVMKPGKDVVWLQVPFSSLPGEQKNIDT 243
Query: 219 -------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQF 271
GF +++ V + +K P ++L +K +A N ++ K
Sbjct: 244 KLPNGANYGFPVNTMHIVANKAWAEKNPAAAKLFAIMKLPLADINAQNAMMHAGKSSEAD 303
Query: 272 V---GRTMLRTHPDLLKNWLI 289
V + H W+
Sbjct: 304 VQGHVDGWINAHQQQFNGWVK 324
>gi|251795656|ref|YP_003010387.1| substrate-binding region of ABC-type glycine betaine transporter
[Paenibacillus sp. JDR-2]
gi|247543282|gb|ACT00301.1| Substrate-binding region of ABC-type glycine betaine transport
system [Paenibacillus sp. JDR-2]
Length = 299
Score = 125 bits (313), Expect = 9e-27, Method: Composition-based stats.
Identities = 29/302 (9%), Positives = 80/302 (26%), Gaps = 31/302 (10%)
Query: 1 MYKI---LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M I + + + S + +++ M +++E+ K
Sbjct: 1 MRHIRVRFGLLVVVIIAFCSLLSGCGKGNTIIIGTQTFSEPKIIANMYKLLIEDRTDMKV 60
Query: 58 NIKL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIA----------------PYLEEGS 99
+ V +L I + Y L+ + + +
Sbjct: 61 KVMPDLATSTVVLDALTKDDIQMASLYSGIILDNYFPIERTNDRASILKQAQEGFDKHYG 120
Query: 100 IKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI 159
+K Y V I+ K + + G++
Sbjct: 121 LKWFDSYGFENTYAFTVRKDLAEQE--QLHKISDVKNKATSMRLGVDTSWLERAGDGYAD 178
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
+ + ++ + + N + +++ + + L +
Sbjct: 179 FQKVYGITFGKVYP----MEVALVYSAIATNKMDIVVAYSTDARLKEYELVTLED--DKH 232
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
F V+R + L+ P + ++ + K ++ + NK++ + V L
Sbjct: 233 FFPPYDASPVIRKEVLEAHPELQEIIHLLIGKLDAKTIIDLNYEVDVNKRNEKKVAEEYL 292
Query: 278 RT 279
+
Sbjct: 293 KQ 294
>gi|303304908|dbj|BAJ14776.1| putative periplasmic component of ABC-type proline glycine betaine
transport system [Staphylococcus lentus]
Length = 309
Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats.
Identities = 53/305 (17%), Positives = 110/305 (36%), Gaps = 18/305 (5%)
Query: 2 YKILAVCLFLTTFSISYARDADS----------CTPVRFADTGWTDIAATTAMTSVILEE 51
+KI+ + L I A + S + G + AA + + + +L++
Sbjct: 7 FKIIGLVTTLMIAMILSACGSGSSEENSSTDLGGKEIEIPYKG-DNSAARSLVIAEVLKD 65
Query: 52 ILGYKTNIKLLA-VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGA 110
+GY + + + +PS +K + + + A
Sbjct: 66 -VGYDVVTTPVPASGPLYSATSENSNSFNAAGIFPSTDKSYLNKYDNLEVYDDKNIIDEA 124
Query: 111 KYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
LAV + I ++ K + I G + N + + + +N FS +
Sbjct: 125 NVSLAVPKYMKDVDSIDDLKNDNDLGKSVDWTITGTDNRNGVMKETNEALKDNDFSD--W 182
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV 229
+L ++S+ I+ + P +F +PH I +++ L ++I G G+ V V
Sbjct: 183 KLDKSSDEEMLKTIQEKYKKQQPIIFTGTQPHWIFEEMDFKMLDDPDKIYGSGKEHVNLV 242
Query: 230 VRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
++ + P ++ I ++ E E+ K I + +D Q V + H W
Sbjct: 243 FNKNFKNNHPAAYKIATRIANDWNEDDEKELSKKIYVDNEDPQKVAEDYVNNHESKKDKW 302
Query: 288 LIGVT 292
G+
Sbjct: 303 TEGIK 307
>gi|81428233|ref|YP_395233.1| putative glycine/betaine/carnitine/choline ABC transporter,
substrate-binding lipoprotein precursor [Lactobacillus
sakei subsp. sakei 23K]
gi|78609875|emb|CAI54922.1| Putative glycine/betaine/carnitine/choline ABC transporter,
substrate-binding lipoprotein precursor [Lactobacillus
sakei subsp. sakei 23K]
Length = 311
Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats.
Identities = 29/277 (10%), Positives = 68/277 (24%), Gaps = 25/277 (9%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGIDIFM 80
+ +R + T+ + S ++ K + + VT SL DI
Sbjct: 32 SAKDTIRISSQSTTESQILANIVSQLIAHETDNKVELVNNLGSSTVTHESLIRGDADIAT 91
Query: 81 GYWY---------------PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
+ P + I + + G A
Sbjct: 92 SRYAGTEITGTLKMKPTKDPKKAQTIVKREFKDRYQQTWFPTYGFADTYAFMVTQKMAKK 151
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
+ ++ + G++ ++ + ++ +
Sbjct: 152 YHLETVSDLGRVAKQLTAGVDSVWVNHEGDGYQEFKQTYGYDFKKVAP----MQIGLVYS 207
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
V L + N+ L + F V L + P + LL
Sbjct: 208 ALAAGKMDVVLGYSTDGRIKSYNLKVLKD--DRHFFPPYDASLVATDQILKQHPELKPLL 265
Query: 246 KNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ + ++ + + N+ + V + L H
Sbjct: 266 NRLSGQINLDTMQTLNYKVDNDLLEPAVVAKQFLTQH 302
>gi|227113616|ref|ZP_03827272.1| glycine betaine transporter periplasmic subunit [Pectobacterium
carotovorum subsp. brasiliensis PBR1692]
Length = 334
Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats.
Identities = 37/308 (12%), Positives = 84/308 (27%), Gaps = 36/308 (11%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI-KLLAVPVTFRSLKNK 74
+ V + ++ T + S LE LGY + + V + S+ +
Sbjct: 22 AADTAQPGKGISVIPVQSTISEETFQTLLVSRALE-KLGYDVQPPREVDYNVAYTSIASG 80
Query: 75 GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQ----- 129
W P + E + GA ++ +
Sbjct: 81 DATFIAVNWDPLHADQYKAAGGDAKFYRQGEYVSGAAQGYLIDKKTAEKYKITNIAQLKD 140
Query: 130 ----DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
+ + A + G PG I + + + + A +
Sbjct: 141 PKIAKLFDTNGDGKADLTGCTPGWGCEAAINHHLPAYGLT-NTVEHNQGNYAAMIADTIT 199
Query: 186 DQRNNIPAVFLSWEPHP----INSDLNIHYLPGGEE-----------------ISGFGEA 224
+ P ++ +W P+ + ++ +L GF
Sbjct: 200 RYKEGKPILYYTWTPYWVSDVLVPGRDVVWLQVPFSSQPGEMKDVSTKLPNGADYGFPVN 259
Query: 225 SVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNN---KQDRQFVGRTMLRTHP 281
++ + +K P ++L +K +A N + ++D + ++ H
Sbjct: 260 TMKIAANKAWAEKNPAAAKLFAIMKLPIADVNAQNLRMHEGQGSQKDIERHVDGWIKAHQ 319
Query: 282 DLLKNWLI 289
L W+
Sbjct: 320 QLFDGWVK 327
>gi|306831568|ref|ZP_07464726.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, binding protein [Streptococcus gallolyticus
subsp. gallolyticus TX20005]
gi|304426353|gb|EFM29467.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, binding protein [Streptococcus gallolyticus
subsp. gallolyticus TX20005]
Length = 306
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 45/306 (14%), Positives = 96/306 (31%), Gaps = 40/306 (13%)
Query: 2 YKILAVCLFLTTFSIS-----------YARDADSCTPVRFADTGWTDIAATTAMTSVILE 50
K+++ L + + S T +R +T+ + ++ LE
Sbjct: 4 KKVISGALLVVILVAIVGGIWAWRNNQSSEAQQSSTTIRVGSKDFTENLVIAEIYALALE 63
Query: 51 EILGYKTNIKLL-AVPVTFRSLKNKGIDIFMGYWYPSLEKFI----------------AP 93
+ GY + + S+ N ID++ Y L +
Sbjct: 64 DN-GYTVERVSNISSSLIHNSIVNDEIDLYPEYTGTGLLSVLGEDMETDPEKVYKTVKKE 122
Query: 94 YLEEGSIKLVAENLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKKELGAKIYGIEPGNEGN 152
Y E+ ++ + L + IK+ D+ + EL G +E
Sbjct: 123 YEEQFNLTWLDYASANDSQGLVIRTEVANSLNIKTISDLQAHASELRFASQG--EFDERE 180
Query: 153 QRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYL 212
+ + ++S++ S N+ V ++ + + L
Sbjct: 181 DGLPGLEKTYGTFNW-----QSSKVYDNSLKYSVLENDEADVTPAYTTEGQLVNTDEFTL 235
Query: 213 PGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQ 270
++ + ++ VVR + LD P+I +L NI K E+ + + Q+
Sbjct: 236 LEDDKQF-WPPYNLAPVVRDNILDDNPDIKTILNNISAKLDTETVTELNAKVDVDGQEYT 294
Query: 271 FVGRTM 276
V +
Sbjct: 295 DVAKEY 300
>gi|304395965|ref|ZP_07377847.1| Substrate-binding region of ABC-type glycine betaine transport
system [Pantoea sp. aB]
gi|304356334|gb|EFM20699.1| Substrate-binding region of ABC-type glycine betaine transport
system [Pantoea sp. aB]
Length = 303
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 43/304 (14%), Positives = 95/304 (31%), Gaps = 37/304 (12%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+ K + S + A + TP+ A +T+ +AMT + L++ G++ K
Sbjct: 6 IKKSVVALTATLLLS----QTAQAATPLVMATKSFTEQHILSAMTVLWLQKK-GFEVVPK 60
Query: 61 -LLAVPVTFRSLKNKGIDIFMGYWYPS---------------LEKFIAPYLEEGSIKLVA 104
+A + +L NK ID+ Y S + + + + +
Sbjct: 61 RNIATTIGRNALLNKQIDMTWEYTGTSLIIFNHINKPMSSQQAYETVKKLDAKLGLVWLN 120
Query: 105 ENLQGAKYMLAVNDVGFALGIKSY--------QDIAKYKKELGAKIYGIEPGNEGNQRIL 156
Y A+ + + + K + ++ + +
Sbjct: 121 PAPMNNTYAFAMTRERAEKEGITTLSQLVAKIEQVRKSDPDHNWRLGLDLEFAGRSDGLK 180
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ +L ++ + + R+ L + N+ L
Sbjct: 181 PLQKTYNLALDRPQIRQMDPG----LVYNAIRDGFVDAGLIYTTDGRVKGFNLKVLED-- 234
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F +V VVR D L P + L + + + E+ K + + + + V R
Sbjct: 235 DKHFFPSYNVTPVVRQDVLASHPGLDTALNQLSAQITDEAITELNKRVDIDHESPENVAR 294
Query: 275 TMLR 278
L+
Sbjct: 295 DFLQ 298
>gi|148655951|ref|YP_001276156.1| glycine betaine ABC transporter substrate-binding protein
[Roseiflexus sp. RS-1]
gi|148568061|gb|ABQ90206.1| Substrate-binding region of ABC-type glycine betaine transport
system [Roseiflexus sp. RS-1]
Length = 310
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 41/273 (15%), Positives = 83/273 (30%), Gaps = 27/273 (9%)
Query: 28 VRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGIDIFMGYWYP 85
VR +T+ M ++ LE+ G + K A PV +L N ID++ Y
Sbjct: 39 VRIGSKNFTEAILVAEMYALALEDA-GIRVERKFNLGATPVAHTALVNGEIDLYPEYTST 97
Query: 86 SLEKFIAP----------------YLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQ 129
L + + Y E+ + + + LA+ +
Sbjct: 98 GLLEVLKQAPIADAKGILEAVRKGYEEQFKLTWLEPSPFNNTNALAMTRQRAEE--LGIR 155
Query: 130 DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRN 189
+ G G P + ++ F K +
Sbjct: 156 TYSDLVARSGELKLGGPPEFPEREDTKGLMAAYGFDPKFIGDNFVQLDTG-ALRYEALTK 214
Query: 190 NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
V +++ + L + L + + + + V+R D L P I+ L +
Sbjct: 215 GDIDVVVAFGTDGQINGLGLALLED--DKNYYPIYQIAPVIRQDTLAANPAIAETLNKLA 272
Query: 250 --FSVALENEMMKLILN-NKQDRQFVGRTMLRT 279
+ + + + + K++ V RT L+
Sbjct: 273 PLLTNDVMSGLNWQVDGPEKKEIADVARTFLQQ 305
>gi|113477530|ref|YP_723591.1| glycine betaine ABC transporter substrate-binding protein
[Trichodesmium erythraeum IMS101]
gi|110168578|gb|ABG53118.1| Substrate-binding region of ABC-type glycine betaine transport
system [Trichodesmium erythraeum IMS101]
Length = 662
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 45/338 (13%), Positives = 96/338 (28%), Gaps = 52/338 (15%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVR----------FADTGWTD----IAATTAMTSV 47
L + + L S ++ + TT + ++
Sbjct: 323 KTTLGISILLALLVGVTGWQLMSQKNIKSTEHLLPGEGVVVRPTSGLETYGIFTTEIVNI 382
Query: 48 ILEEILGYKTN-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAEN 106
LE LGY+ K L VP ++ N +D +W S ++F E ++ +
Sbjct: 383 GLE-KLGYEIRGEKQLNVPAMHLAVSNGDLDFAGTHWEASHQEFFDNNGGEEKLERLGTL 441
Query: 107 LQGAKYMLAVNDVGFALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILD 157
+ + ++ + + + A + G G + I
Sbjct: 442 ISNSTMGYQIDKKTADKYNITNISQLKEPKIAKLFDSDGDGKANLIGCTAGWSCERVINH 501
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPI-------------- 203
+ I+ + + + I R P +F +W+PH
Sbjct: 502 HLEVYGLEDT-VEQIQGNYSSLLADILVRYRQGKPILFFAWKPHWFSSILREGENVEWLS 560
Query: 204 ---------NSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVAL 254
+ ++ GF +V + +L P RL + I+ +
Sbjct: 561 VPFTSLVGTMENFTEKDTLFNDKNIGFPIDNVRILANKKFLKANPVAKRLFEQIEIPLED 620
Query: 255 ENEMMKLILNNKQDRQFV---GRTMLRTHPDLLKNWLI 289
+ + + N + + + H L +WL
Sbjct: 621 VSIEQEKVKNGENKPIDIRHHAEEWIVNHQGLFDSWLE 658
>gi|158321045|ref|YP_001513552.1| substrate-binding region of ABC-type glycine betaine transport
system [Alkaliphilus oremlandii OhILAs]
gi|158141244|gb|ABW19556.1| Substrate-binding region of ABC-type glycine betaine transport
system [Alkaliphilus oremlandii OhILAs]
Length = 298
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 37/162 (22%), Positives = 63/162 (38%), Gaps = 5/162 (3%)
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
K+LG KI GI+ G Q + + + + +S A + N P +
Sbjct: 40 KQLGYKITGIDAGAGVVQAAEKAVKDYGLD---YTVQTSSGAAMTQALADAIENKEPIIV 96
Query: 196 LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
W PH + ++ YL + G E + T+VR PN ++L N ++
Sbjct: 97 TGWSPHWKFAKYDLKYLEDPKGSFGEAE-HINTIVRLGLDKDMPNAYKILDNFYWTSDDM 155
Query: 256 NEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQ 297
+M + N D + V R + H D + W G +G+
Sbjct: 156 EAVMSKV-NEGADVEEVARQWIDDHQDKVSKWTEGAEKVNGE 196
Score = 68.7 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/109 (20%), Positives = 45/109 (41%), Gaps = 2/109 (1%)
Query: 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDI 78
+ + ++ A W A+T + ++LE+ +GYK + + + ++ + D
Sbjct: 189 GAEKVNGEAIKLAYVAWDTEIASTNVIGLVLED-MGYKVTLTQVEAGPMWAAVASGDADA 247
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKS 127
+ W P K +G ++ + NL+GAK L V I+
Sbjct: 248 IVAAWLPGTHKKYME-DYKGQVEDLGPNLEGAKIGLVVPAYMEINSIED 295
>gi|300087494|ref|YP_003758016.1| glycine betaine ABC transporter substrate-binding protein
[Dehalogenimonas lykanthroporepellens BL-DC-9]
gi|299527227|gb|ADJ25695.1| Substrate-binding region of ABC-type glycine betaine transport
system [Dehalogenimonas lykanthroporepellens BL-DC-9]
Length = 359
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 44/321 (13%), Positives = 91/321 (28%), Gaps = 46/321 (14%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRSLKN 73
+ S + + A W+ T + LEE LGY L P+ + S+ N
Sbjct: 36 TQSVNQKPGQGVTMSPAKPTWSTGWFQTEVFIKALEE-LGYNVEDAIALDNPIFYNSVAN 94
Query: 74 KGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAK 133
+D + W+P +++ + + + L GI S +D
Sbjct: 95 GDVDFWADGWFPLHNQYLPIIEGKAEVVGEFAMGGALQGYLIDKATAVEYGITSIEDFKD 154
Query: 134 Y--------KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
+ A + PG I + + + +A + + +
Sbjct: 155 PEIAALFDTDGDGKANMVACPPGWGCETVINHHMEAYELADW-VNADQAGYDVAMADVVA 213
Query: 186 DQRNNIPAVFLSWEPHP----INSDLNIHYLPGG-------------------------- 215
P F +W P+ + ++ +L
Sbjct: 214 RYNAGEPVFFYTWTPNWTVNALVPGEDVVWLEVPFSSLPADQADLEDETFVANLVGKAGD 273
Query: 216 --EEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV- 272
G+ + V S +LD P + L +NI+ + E + + + +
Sbjct: 274 SEPYNMGWPANDIQVVANSAFLDANPAAAYLFENIQIPLEDIFEQNYQMYQGEDRPEDIV 333
Query: 273 --GRTMLRTHPDLLKNWLIGV 291
+ + W+ G
Sbjct: 334 AHAEAWIAANQSTFDAWIEGA 354
>gi|154687509|ref|YP_001422670.1| periplasmic transport protein OpuCC [Bacillus amyloliquefaciens
FZB42]
gi|154353360|gb|ABS75439.1| OpuCC [Bacillus amyloliquefaciens FZB42]
Length = 305
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 30/279 (10%), Positives = 71/279 (25%), Gaps = 25/279 (8%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--LLAVPVTFRSLKNKGIDI 78
S ++ T+ M + ++E T + L + V +++ IDI
Sbjct: 29 SGASDDTIKIGAQSMTESEIIANMIAQMIEHNTDLNTALIKNLGSNYVQQQAMLGGEIDI 88
Query: 79 FMGYW---------------YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+ P I E + G + A
Sbjct: 89 AATRYSGTDLTSTLGMEAEKDPKKALSIVQKEFEKRFHYKWFDSYGFENTYAFTVTKELA 148
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
++ KK G++ + + + + + +
Sbjct: 149 EKDHLDKVSDIKKHADQFKLGVDNAWLKRKGDGYKGFTDTYGFEFGT----TYPMQIGLV 204
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
+N L++ ++ L + F V+ L + P +
Sbjct: 205 YDAVKNGKMDAVLAYSTDGRIKAYDLKILKD--DKRFFPPYDCSPVIPDSVLKQHPELKG 262
Query: 244 LLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
++ + K E+ + ++ V + L H
Sbjct: 263 IVNKLIGKIDTETMQELNYEVDGKLKEPSVVAKEFLEKH 301
>gi|73542180|ref|YP_296700.1| substrate-binding region of ABC-type glycine betaine transport
system [Ralstonia eutropha JMP134]
gi|72119593|gb|AAZ61856.1| Substrate-binding region of ABC-type glycine betaine transport
system [Ralstonia eutropha JMP134]
Length = 315
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 46/300 (15%), Positives = 92/300 (30%), Gaps = 30/300 (10%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL- 62
+ + L++ A + PVR +T+ ++MTS L G T +
Sbjct: 20 TIVAAVLLSSAPARAQAPAANAAPVRVGGKNFTEQLILSSMTSQYLRAK-GLGTELTSGL 78
Query: 63 AVPVTFRSLKNKGIDIFMGYWYP---------------SLEKFIAPYLEEGSIKLVAENL 107
+ ++++N +D+ Y + + + + +
Sbjct: 79 GSTLMRQAMENGQLDVVWDYTGTALIVFNKVEEKLDAKASYARVKTLDAARGLVWLEPSR 138
Query: 108 QGAKYMLAVNDVGFALGIKSY-----QDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
Y LA+ + + + K ++ + +
Sbjct: 139 INNTYALAMPKQRAQASGVTTLSAYAEKMRKAGEDAQHPFAVDMEFAARPDGLEPLKAQY 198
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
K K +I+ + +NN + L + + L ++ F
Sbjct: 199 KLPFKRRDVIQLDPG----LVYTALKNNQVDMGLVYTTDGRVKGFELVLLED--DLHFFP 252
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ S VVR LDK P ++ LL + K A EM + +Q V LR+H
Sbjct: 253 DYSAVPVVRKAVLDKHPELATLLDALSAKLDNASMTEMNYQVDIGQQPVDKVAADFLRSH 312
>gi|330869015|gb|EGH03724.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. aesculi str. 0893_23]
Length = 288
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 39/293 (13%), Positives = 86/293 (29%), Gaps = 30/293 (10%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL-AVPVTFRS 70
A +R +T+ +T+ L Y I + +
Sbjct: 1 MALLFPAFAQAADKPLLRVGARVFTEQTMLAELTAQYLRTK-NYDVQITGGLGSNLARSA 59
Query: 71 LKNKGIDIFMGYWYPSLEKF---------------IAPYLEEGSIKLVAENLQGAKYMLA 115
++ +D+ Y SL + + + + ++ + Y LA
Sbjct: 60 QESGQLDLLWEYTGVSLVAYNHIDEKLDSAQTYARVKEVDAKKGLVWLSPSKFNNTYALA 119
Query: 116 VNDVGFALG-----IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
+ + + K + + G + + ++ M+ + +L
Sbjct: 120 LPQKVADKYPQVNTMTDLTKVLKDEAKEGHVVALDTEFANRSDGLIGMVKHYDMNLGREN 179
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
+ + RN L + + + L + F + + V+
Sbjct: 180 ----TRQMDAGLVYTALRNGQVFAGLVYTTDGRLNAFKLKVLED--DKHYFPDYTAAPVI 233
Query: 231 RSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRTHP 281
R +YLDK P+I+ LLK + ++ + + V LR HP
Sbjct: 234 RQEYLDKHPDIATLLKPLADLLDNQTMIDLNARVDVGHESPSTVAADFLRQHP 286
>gi|186682957|ref|YP_001866153.1| substrate-binding region of ABC-type glycine betaine transporter
[Nostoc punctiforme PCC 73102]
gi|186465409|gb|ACC81210.1| Substrate-binding region of ABC-type glycine betaine transport
system [Nostoc punctiforme PCC 73102]
Length = 300
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 38/301 (12%), Positives = 85/301 (28%), Gaps = 33/301 (10%)
Query: 1 MYKILAVC-----LFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M + LA C L L S + ++ S + A +T+ + +E
Sbjct: 1 MKRFLAFCFLTFALLLLITSCTPNVNSSSDGNIIVASKDFTEQDILGEFLAQQIEATTNL 60
Query: 56 KTNIKL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP----------------YLEE 97
K + + V ++ ID ++ Y + + Y ++
Sbjct: 61 KVSRRPRLGGSFVCHNAITTGKIDAYIEYTGTAFTGILKQKAVNDPKEVYERLKQAYSQQ 120
Query: 98 GSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILD 157
++++ + + V A +G E E
Sbjct: 121 FKLEVMPSLGFENTFAMIVRGDDAKRYNIQTLSEATQYTPQWRGGFGYE-FLEREDGFPG 179
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
+ R ++ ++ I R + S L + L +
Sbjct: 180 LAKTYNL-----RFAKSPQIMDLGLIYRALIQKQVDMVAGNSTDGQISRLGLVVLKD--D 232
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
F ++R + L K P + + ++ K S ++ L+ +D + V +
Sbjct: 233 KHYFPPYETVPIIRQEILKKYPELKTAIASLAGKISADEMRQLNYLVEGELRDVKDVVQE 292
Query: 276 M 276
Sbjct: 293 F 293
>gi|261868165|ref|YP_003256087.1| glycine betaine [Aggregatibacter actinomycetemcomitans D11S-1]
gi|293391893|ref|ZP_06636227.1| glycine betaine [Aggregatibacter actinomycetemcomitans D7S-1]
gi|261413497|gb|ACX82868.1| glycine betaine [Aggregatibacter actinomycetemcomitans D11S-1]
gi|290952427|gb|EFE02546.1| glycine betaine [Aggregatibacter actinomycetemcomitans D7S-1]
Length = 503
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 40/307 (13%), Positives = 92/307 (29%), Gaps = 40/307 (13%)
Query: 2 YKILAVCLFLTTFSISYARDA--DSCTPVRFADTGWTDIAATTAMTSVILEE-ILGYKTN 58
+ LA+ L L ++ +++ + V A ++ M +++E+ +
Sbjct: 204 KRPLAIVLILGLSAVGFSQISLTSQTQKVVIAGKLGSEPDILINMYKLLIEQENKTIQVE 263
Query: 59 IKL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEE------------------- 97
+K F +L + IDI+ + LE + E+
Sbjct: 264 LKPNFGKTSFLFNALNSGEIDIYPEFTGTVLEALVQVLPEQKNHHRSPETTYQLSKQLLA 323
Query: 98 --GSIKLVAENLQGAKYMLAVND-VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQR 154
++ + Y LAV + G G+ + D+ +
Sbjct: 324 EQFRLEFLPPMAYQNTYALAVKEAYGATHGLATISDLHH---------VAGDIRAGFTLE 374
Query: 155 ILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPG 214
LD ++ K + + NN + ++ + L
Sbjct: 375 FLDRVDGYKGIKSQGITLVHIVTLEPALRYTALLNNKIDLIEAFSTDAELKQHQLRLLKD 434
Query: 215 GEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFV 272
+ ++++D+ K P + L + + S +EM + + + V
Sbjct: 435 DINLF--PAYQGAPLMKADFAAKNPQVLTALNRLANRISEQEMSEMNYQVKVLGESPEKV 492
Query: 273 GRTMLRT 279
R L+
Sbjct: 493 AREYLKK 499
>gi|242243767|ref|ZP_04798211.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Staphylococcus epidermidis
W23144]
gi|242232770|gb|EES35082.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Staphylococcus epidermidis
W23144]
Length = 297
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 29/292 (9%), Positives = 76/292 (26%), Gaps = 27/292 (9%)
Query: 10 FLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL----LAVP 65
L+ S+ D ++ V+ T ++ M +++E K L +
Sbjct: 1 MLSGCSLPGLGDGNAKDDVKITTTETSETKIIGHMEKLLIEHETDGKIKPTLIGNLGSSI 60
Query: 66 VTFRSLKNKGIDIFMGYWY---------------PSLEKFIAPYLEEGSIKLVAENLQGA 110
+ +L+ ++ + P L + + G
Sbjct: 61 IQHNALQRGDANMSAVRYTGTELTSVLAAKPTKDPEKAMSETQRLFKKKYDEKFYHSLGF 120
Query: 111 KYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
A + ++ +K G++ + K
Sbjct: 121 ANTYAFMVTKETAKKYHLEKVSDLEKYKDELRLGMDTQWMNRAGDGYPAFVKDYGFKF-- 178
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
+++ + +NN V + + + ++ L + +
Sbjct: 179 --DSARPMQIGLVYDALKNNKLDVAVGYSTDGRIAAYDLKILEDDRKFF--PPYDGSPLA 234
Query: 231 RSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ P I + LK + K S ++ ++ + L+ H
Sbjct: 235 NEQLIKDNPEIDKALKKLEGKISTEEMQKLNYEADGKGKEPAVIAEEYLKKH 286
>gi|27468934|ref|NP_765571.1| glycine betaine/carnitine/choline ABC transporter (osmoprotec)
opuCC [Staphylococcus epidermidis ATCC 12228]
gi|27316482|gb|AAO05657.1|AE016750_262 glycine betaine/carnitine/choline ABC transporter (osmoprotec)
opuCC [Staphylococcus epidermidis ATCC 12228]
Length = 297
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 29/292 (9%), Positives = 76/292 (26%), Gaps = 27/292 (9%)
Query: 10 FLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL----LAVP 65
L+ S+ D ++ V+ T ++ M +++E K L +
Sbjct: 1 MLSGCSLPGLGDGNAKDDVKITTTETSETKIIGHMEKLLIEHETDGKIKPTLIGNLGSSI 60
Query: 66 VTFRSLKNKGIDIFMGYWY---------------PSLEKFIAPYLEEGSIKLVAENLQGA 110
+ +L+ ++ + P L + + G
Sbjct: 61 IQHNALQRGDANMSAVRYTGTELTSVLAAKPTKDPDKAMSETQRLFKKKYDEKYYHSLGF 120
Query: 111 KYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
A + ++ +K G++ + K
Sbjct: 121 ANTYAFMVTKETAKKYHLEKVSDLEKYKDELRLGMDTQWMNRAGDGYPAFVKDYGFKF-- 178
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
+++ + +NN V + + + ++ L + +
Sbjct: 179 --DSARPMQIGLVYDALKNNKLDVAVGYSTDGRIAAYDLKILEDDRKFF--PPYDGSPLA 234
Query: 231 RSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ P I + LK + K S ++ ++ + L+ H
Sbjct: 235 NEQLIKDNPEIDKALKKLEGKISTEEMQKLNYEADGKGKEPAVIAEEYLKKH 286
>gi|293367142|ref|ZP_06613813.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Staphylococcus epidermidis
M23864:W2(grey)]
gi|291318703|gb|EFE59078.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Staphylococcus epidermidis
M23864:W2(grey)]
Length = 297
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 29/292 (9%), Positives = 76/292 (26%), Gaps = 27/292 (9%)
Query: 10 FLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL----LAVP 65
L+ S+ D ++ V+ T ++ M +++E K L +
Sbjct: 1 MLSGCSLPGLGDGNAKDDVKITTTETSETKIIGHMEKLLIEHETDGKIKPTLIGNLGSSI 60
Query: 66 VTFRSLKNKGIDIFMGYWY---------------PSLEKFIAPYLEEGSIKLVAENLQGA 110
+ +L+ ++ + P L + + G
Sbjct: 61 IQHNALQRGDANMSAVRYTGTELTSVLAAKPTKDPDKAMSETQRLFKKKYDEKYYHSLGF 120
Query: 111 KYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
A + ++ +K G++ + K
Sbjct: 121 ANTYAFMVTKETAKKYHLKKVSDLEKYKDELRLGMDTQWMNRAGDGYPAFVKDYGFKF-- 178
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
+++ + +NN V + + + ++ L + +
Sbjct: 179 --DSARPMQIGLVYDALKNNKLDVAVGYSTDGRIAAYDLKILEDDRKFF--PPYDGSPLA 234
Query: 231 RSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ P I + LK + K S ++ ++ + L+ H
Sbjct: 235 NEQLIKDNPEIDKALKKLEGKISTEEMQKLNYEADGKGKEPAVIAEEYLKKH 286
>gi|229828906|ref|ZP_04454975.1| hypothetical protein GCWU000342_00991 [Shuttleworthia satelles DSM
14600]
gi|229792069|gb|EEP28183.1| hypothetical protein GCWU000342_00991 [Shuttleworthia satelles DSM
14600]
Length = 297
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 43/300 (14%), Positives = 93/300 (31%), Gaps = 34/300 (11%)
Query: 1 MYKILAVCLFLTTFS-----ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M K+L++ L T S + +R G+T+ + ++ LE+ G
Sbjct: 1 MKKLLSLTLVAATALMAFAACGSKSADKSGSAIRIGSKGFTENEIVAEVYALALEDA-GL 59
Query: 56 KTNIKL-LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP----------------YLEEG 98
K L + +SL ID++ Y L + Y ++
Sbjct: 60 KVERTPDLGSSIIHQSLTTGDIDLYPEYTGTGLISVLKEEPRTSANEVYQEVKKAYEDKF 119
Query: 99 SIKLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILD 157
I + + + + IK+ D+ K + + G ++ I
Sbjct: 120 KISWLDYSPANDGQGIVITKAASDQYGIKTISDLQKNAERIRFASQG--EFDQRTDGIPA 177
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
+ + + + + N ++ SD + + L +
Sbjct: 178 LTAKYGEFHWKSTNVYDN-----ALKYQVLDQNQADAAPAYTTEGQLSDTSKYVLLED-D 231
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
+ ++ VVR + L+K P I+ L I K + + ++ + V +
Sbjct: 232 KQAWPPYNLAPVVRDEVLEKNPKIAEALNKISPKITTENITRANAEVDLKGKEYKDVAKE 291
>gi|194443724|ref|YP_002042056.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Newport str. SL254]
gi|194402387|gb|ACF62609.1| glycine betaine-binding periplasmic protein [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
Length = 331
Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats.
Identities = 43/321 (13%), Positives = 90/321 (28%), Gaps = 37/321 (11%)
Query: 4 ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKL 61
I A + ++A D V+ + ++ + T + S LE LGY
Sbjct: 6 IFASAFATLVTASAFAADLPGKGITVQPIQSTISEESFQTLLVSRALE-KLGYTVNKPSE 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V + S+ + W P + A + + GA ++
Sbjct: 65 VDYNVGYTSIASGDATFTAVNWQPLHDDMYAAAGGDKKFYREGVFVSGAAQGYLIDKKTT 124
Query: 122 ALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ I + A + G PG I K +
Sbjct: 125 EQYNITNIAQLKDPKIAKIFDTNGDGKADMMGCSPGWGCEAVINHQNKAFDL-QKTVEVS 183
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI-------------- 218
+ A + + P ++ +W P+ ++ + ++
Sbjct: 184 HGNYAAMMADTITRFKEGKPVLYYTWTPYWVSDVMKPGKDVVWLQVPFSSLPGEQKNIDT 243
Query: 219 -------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQF 271
GF +++ V + +K P ++L +K +A N ++ K
Sbjct: 244 KLPNGANYGFPVNTMHIVANKAWAEKNPAAAKLFAIMKLPLADINAQNAMMHAGKSSEAD 303
Query: 272 V---GRTMLRTHPDLLKNWLI 289
V + H W+
Sbjct: 304 VQGHVDGWINAHQQQFDGWVK 324
>gi|319638228|ref|ZP_07992991.1| glycine betaine [Neisseria mucosa C102]
gi|317400501|gb|EFV81159.1| glycine betaine [Neisseria mucosa C102]
Length = 505
Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats.
Identities = 42/304 (13%), Positives = 94/304 (30%), Gaps = 38/304 (12%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEE---ILGYKTNIK 60
+LA+ + L T +S + V A ++ M +++E +
Sbjct: 208 VLALAVGLGTLGLSQISFTPATKNVVVAGKMGSEPDILINMYKLLIERENSNVKVTVKPN 267
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEE---------------------GS 99
F +L + IDI+ + LE + E+
Sbjct: 268 FGKTTFLFSALNSGEIDIYPEFTGTVLEALVQVPTEQKNHHLSPDETYQRGKQLLAEQYQ 327
Query: 100 IKLVAENLQGAKYMLAVND-VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
++ + Y LAV + G + +K+ D+ + + + +D
Sbjct: 328 LEFLPPMSYQNTYALAVKESYGASHQLKTISDLKQ---------VAPDIRAGFSLEFIDR 378
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ K ++ + N+ + ++ + L +I
Sbjct: 379 ADGYKGMQAAGITLKHIVSLEPALRYTALLNDKIDLVEAFSTDAELKQYQLRLLKD--DI 436
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
S F ++++++ +K P I L + K S +EM + + + V R
Sbjct: 437 SLFPAYQGAPLMKAEFAEKNPQIVTALNRLAGKISEEEMSEMNYRVKVQGESAENVARDY 496
Query: 277 LRTH 280
L +
Sbjct: 497 LEKN 500
>gi|227329027|ref|ZP_03833051.1| glycine betaine transporter periplasmic subunit [Pectobacterium
carotovorum subsp. carotovorum WPP14]
Length = 340
Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats.
Identities = 37/308 (12%), Positives = 84/308 (27%), Gaps = 36/308 (11%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRSLKNK 74
+ V + ++ T + S LE LGY + + V + S+ +
Sbjct: 28 AADTAQPGKGISVIPVQSTISEETFQTLLVSRALE-KLGYDVQSPREVDYNVAYTSIASG 86
Query: 75 GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQ----- 129
W P + E + GA ++ +
Sbjct: 87 DATFIAVNWDPLHADQYKAAGGDAKFYRQGEYVSGAAQGYLIDKKTADKYKITNIAQLKD 146
Query: 130 ----DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
+ + A + G PG I + + + + A +
Sbjct: 147 PKIAKLFDTNGDGKADLTGCTPGWGCEAAINHHLPAYGLT-NTVEHNQGNYAAMIADTIT 205
Query: 186 DQRNNIPAVFLSWEPHP----INSDLNIHYLPGGEE-----------------ISGFGEA 224
+ P ++ +W P+ + ++ +L GF
Sbjct: 206 RYKEGKPILYYTWTPYWVSDVLVPGRDVVWLQVPFSSQPGEMKDVSTKLPNGADYGFPVN 265
Query: 225 SVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNN---KQDRQFVGRTMLRTHP 281
++ + +K P ++L +K +A N + ++D + ++ H
Sbjct: 266 TMKIAANKAWAEKNPAAAKLFAIMKLPIADVNAQNLRMHEGQGSQKDIERHVDGWIKAHQ 325
Query: 282 DLLKNWLI 289
L W+
Sbjct: 326 QLFDGWVK 333
>gi|314934873|ref|ZP_07842232.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Staphylococcus caprae
C87]
gi|313652803|gb|EFS16566.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Staphylococcus caprae
C87]
Length = 320
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 25/290 (8%), Positives = 77/290 (26%), Gaps = 27/290 (9%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL----LAVPVT 67
+ ++ ++++S V+ G ++ + M +++E K L + +
Sbjct: 19 SGCNLPGLKNSNSDDDVKITSLGTSESQIISHMMRLLIEHDTHGKIKPTLINNLGSSVIQ 78
Query: 68 FRSLKNKGIDIFMGYWY---------------PSLEKFIAPYLEEGSIKLVAENLQGAKY 112
++ + ++ + P E N G
Sbjct: 79 HNAVASGQANMSGTRYTGTDLTGALNEKPIKDPKKAMKATHKGFEEKYHQKFFNSYGFAN 138
Query: 113 MLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
++ ++ KK G++ + + ++ +
Sbjct: 139 SYSLIVTKETAKKYHLNTVSDLKKHAKDLRVGMDSSWKDRKGDGYPAFKKEYGFDFGTVR 198
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRS 232
+ + V + + + ++ L ++ +
Sbjct: 199 P----MQIGLVYDALNSGKLDVAVGYSTDGRIAAYDLKVLKDDKKFF--PPYDASPLATD 252
Query: 233 DYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
L + P + +LK + K S ++ ++ V L+ H
Sbjct: 253 QLLKEHPELKPILKKMEGKISTKQMQKLNYQADGKGEEPATVAEKFLKKH 302
>gi|254461092|ref|ZP_05074508.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Rhodobacterales bacterium
HTCC2083]
gi|206677681|gb|EDZ42168.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Rhodobacteraceae bacterium
HTCC2083]
Length = 313
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 35/291 (12%), Positives = 85/291 (29%), Gaps = 25/291 (8%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGY 82
DS P+ W+ + + ILE +G + S++ + + +
Sbjct: 24 DSSDPIVIPIHNWSSQIVMSNVVGQILE-GVGNNVEYVTTDSQAVYESVRLGDVTMELEV 82
Query: 83 WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG--FALGIKSYQDIAKYKKELGA 140
W + +E+G I V ++ + G+ S++ +
Sbjct: 83 WEGAFGASFRAAMEKGGIVDVGDHNAVTREDWWYPMWTKDACPGLPSWEALNDCAAVFAT 142
Query: 141 KIYGIEPGN---EGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLS 197
G + + + + S A +++I + + P V +
Sbjct: 143 AETGDKGRYLDGPVDWLKHGKERVEALDMDFVVINAGSAAALWAEIGAAEADKKPVVVFN 202
Query: 198 WEPHPINSDLNIHYLPGG-------------------EEISGFGEASVYTVVRSDYLDKC 238
W P+ + ++ + + + K
Sbjct: 203 WTPNFAEAVWPGEFVEFPQWVDGCDKDPSVGPNPDALYDCGNPAKGYLKKAAWEGMEAKW 262
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
P +L+ I F+ EM K + ++ + + L + D+ ++W
Sbjct: 263 PAAYSVLEKISFTNPQIAEMAKFVDVDEMEPEEAAEEWLAANKDVWESWTK 313
>gi|251792793|ref|YP_003007519.1| glycine betaine [Aggregatibacter aphrophilus NJ8700]
gi|247534186|gb|ACS97432.1| glycine betaine [Aggregatibacter aphrophilus NJ8700]
Length = 491
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 41/304 (13%), Positives = 90/304 (29%), Gaps = 38/304 (12%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEE---ILGYKTNIK 60
I A+ + +S + V A ++ M +++E +
Sbjct: 194 IFALAVGFGALGLSQISFTPTTKNVVIAGKMGSEPDILINMYKLLIERENSNIRVTVKPN 253
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPY---------------------LEEGS 99
F +L + IDI+ + LE + E+
Sbjct: 254 FGKTTFLFNALNSGEIDIYPEFTGTVLEALVQVPSEQKNRHLSPDETYQRGKQLLAEQYQ 313
Query: 100 IKLVAENLQGAKYMLAVND-VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
++ + Y LAV + G A +K+ D+ + + + D
Sbjct: 314 LEFLPPMSYQNTYALAVKESYGAAHQLKTISDLKQAAP---------DIRAGFSLEFTDR 364
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ K ++ + N+ + ++ + L +I
Sbjct: 365 ADGYKGMQAAGITLKHIVSLEPALRYTALLNDKIDLVEAFSTDAELKQYQLRLLKD--DI 422
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
S F ++++++ +K P I L + K S +EM + + + V R
Sbjct: 423 SLFPAYQGAPLMKAEFAEKNPQIVTALNRLAGKISEEEMSEMNYRVKVQGESAENVARDY 482
Query: 277 LRTH 280
L +
Sbjct: 483 LEKN 486
>gi|224370049|ref|YP_002604213.1| ABC-type glycine betaine/proline transport system, periplasmic
glycine betaine/proline-binding protein
[Desulfobacterium autotrophicum HRM2]
gi|223692766|gb|ACN16049.1| ABC-type glycine betaine/proline transport system, periplasmic
glycine betaine/proline-binding protein
[Desulfobacterium autotrophicum HRM2]
Length = 303
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 43/304 (14%), Positives = 91/304 (29%), Gaps = 33/304 (10%)
Query: 1 MYKILAVC--LFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M KI + L + + +T+ + ++LE+ G+
Sbjct: 1 MKKIFKLVFPAILILTLLLPGSVFAKDKSLIVGGKDYTEQLLLPELAGILLEQA-GFDVT 59
Query: 59 IKLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEG------------------S 99
+K V +SL+N D++ Y + + E
Sbjct: 60 LKTGVGSVIARKSLENAQFDLYYEYTGTAYTLYYKQKDTEIMTVPEKVYDWVKQADSEKD 119
Query: 100 IKLVAENLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKKELGAKIYGI--EPGNEGNQRIL 156
+ + Y L +N IKS D+ Y + K+ E
Sbjct: 120 LVWLDPVRFNNTYSLMMNKAEAEKLEIKSISDLGVYVTKNPDKLIFALDSEFWERPDGFK 179
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
++ F L ++ + S + ++ + + + + L
Sbjct: 180 GIMKRYNFRLPSNQVKKMS----VGLTYQALKDGLVNSAMGFTTDGRIAAFGFVNLED-- 233
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ S F + VVR + LD P I +LK + + + ++ + + + V
Sbjct: 234 DKSFFPVYNPVPVVRKEILDTYPEIPAILKPLAENLTSEVMQQLNMAVDIDHKPVHDVAM 293
Query: 275 TMLR 278
L+
Sbjct: 294 DWLK 297
>gi|13476104|ref|NP_107674.1| ABC transporter binding protein [Mesorhizobium loti MAFF303099]
gi|14026864|dbj|BAB53460.1| ABC transporter binding protein [Mesorhizobium loti MAFF303099]
Length = 324
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 40/294 (13%), Positives = 82/294 (27%), Gaps = 27/294 (9%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
+A+ + A +S P++ A WT + + ILE LGY
Sbjct: 15 VALATLGLLTPSAQAAAPESNDPIKIALFDWTSVNLNAKILGGILE-KLGYTVEYPTADY 73
Query: 65 -PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA- 122
L N +D+ + +W + + + G + + + AK +
Sbjct: 74 LSSLTTGLTNGDLDVGLEFWDTTAGEAMKASDATGQTERLGKLGPKAKEEWWFPEYMKEK 133
Query: 123 -LGIKSYQDIAKYKKELGAKIYGIEP-----GNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ + + P G D L + ++
Sbjct: 134 CPTLPDWHALLDPTCAASFSTAETSPKGRYLGGPVTWEGFDDERVAALKLPFTVIHAGTD 193
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI------------------ 218
A F+++ + P + + PH + ++ E
Sbjct: 194 AAMFAELDSAYQRKAPIMLWIYSPHWAPAKYKGEWVQFPEYTPECYNDPKWGVNPDAKYD 253
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
G ++ + DK P ++ K N+M I N + + V
Sbjct: 254 CGKPHGEIWKYAWNGMKDKWPVAYKVAKAFTIDTDELNKMSGDIDLNGKTPEEV 307
>gi|319784810|ref|YP_004144286.1| substrate-binding region of ABC-type glycine betaine transport
system [Mesorhizobium ciceri biovar biserrulae WSM1271]
gi|317170698|gb|ADV14236.1| Substrate-binding region of ABC-type glycine betaine transport
system [Mesorhizobium ciceri biovar biserrulae WSM1271]
Length = 324
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 42/295 (14%), Positives = 85/295 (28%), Gaps = 27/295 (9%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
A+ + A +S P++ A WT + + ILE LGY
Sbjct: 14 TFALAAASALTPSAQAAAPESTDPIKIALFDWTSVNLNAKILGGILE-KLGYTVEYPTAD 72
Query: 64 V-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
L N +D+ + +W + + + G + + + AK +
Sbjct: 73 YLSSLTTGLTNGDLDVGLEFWDTTAGEAMKASDATGQTERLGKLGPKAKEEWWFPEYMKE 132
Query: 123 --LGIKSYQDI--AKYKKELGAKIY---GIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
G+ +++ + K + G G D L + +
Sbjct: 133 KCPGLPNWEALKDPKCAEAFSTAETAPKGRYLGGPVTWEGFDDERVEALKLPFTVIHAGT 192
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI----------------- 218
+ A F+++ + P + + PH + ++ E
Sbjct: 193 DAAMFAELDSAYQRKAPIMLWIYSPHWAPAKYKGEWVEFPEYTPECYNDPKWGVNPDAKY 252
Query: 219 -SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
G ++ S DK P ++ K N+M I + + V
Sbjct: 253 DCGKPHGEIWKYSWSGMKDKWPVAYKVAKAYTIDTDELNKMSGEIDLGGKTPEDV 307
>gi|89096763|ref|ZP_01169655.1| OpuAC [Bacillus sp. NRRL B-14911]
gi|89088778|gb|EAR67887.1| OpuAC [Bacillus sp. NRRL B-14911]
Length = 296
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 35/163 (21%), Positives = 66/163 (40%), Gaps = 3/163 (1%)
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
+ KI GIEPG + +L+ + L+E+S A +++ ++ P +
Sbjct: 37 DGVDYKITGIEPGAGIMSATNKALEEYD-NLEDYTLVESSSAAMAAELDNAIKDEEPIIV 95
Query: 196 LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
W PH + + ++ YL + I G E + T R + P+ ++L ++
Sbjct: 96 TGWTPHWMFAKYDLKYLEDPKGIYGEAE-KIETFTRKGLEEDQPSAYKVLDQFFWTNDDI 154
Query: 256 NEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
E+M I D T ++ + D + W G G+D
Sbjct: 155 GEVMVAI-QEGTDPAEAADTWVKDNSDKVAEWTNGAEEVSGED 196
Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 2/111 (1%)
Query: 17 SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGI 76
+ + S + + W A+T + + +LE +GY + L F ++ N
Sbjct: 186 TNGAEEVSGEDISLSYVAWDSEIASTNVVAKVLES-IGYNVEMVQLDAGPMFTAVANGDA 244
Query: 77 DIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKS 127
D + W P K + ++ + ENL+GAK L V A I+
Sbjct: 245 DATVSGWLPLTHKDYLDQYGD-DMERLGENLEGAKTGLVVPSYVEADSIED 294
>gi|239629369|ref|ZP_04672400.1| glycine betaine/carnitine/choline ABC transporter [Lactobacillus
paracasei subsp. paracasei 8700:2]
gi|239528055|gb|EEQ67056.1| glycine betaine/carnitine/choline ABC transporter [Lactobacillus
paracasei subsp. paracasei 8700:2]
Length = 509
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 42/296 (14%), Positives = 83/296 (28%), Gaps = 20/296 (6%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEI---LGYKTNIK 60
L V + L + Y V A ++ M ++E+
Sbjct: 212 TLGVIICLPVVGMIYQNVHPVSRTVTIAGKMGSEPDILINMYKDLIEQAAPQTKVVLKPN 271
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQ-----GAKYMLA 115
F +LK + +DI+ + LE + P ++ + + L K+
Sbjct: 272 FGQTSFLFNALKTQKVDIYPEFTGTVLESLVKPSKQQRQLGVPGARLYKYAAQDLKHQFQ 331
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGI--------EPGNEGNQRILDMINNNKFSLK 167
+ + +Y + K I I E + LD + K
Sbjct: 332 MTYLAPMAYNNTYAVVIKRSYAQAHGITTISDLQRVQSELLGGFDLEFLDRTDGYKGLQA 391
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
+ L ++ +N + + ++ L
Sbjct: 392 TYGLNFKTQSIDPGLRYEALKNGKINLTDGYSTDSQIRQFDLIALTD--NRHQIPVYQGA 449
Query: 228 TVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTHP 281
++ + + K P I + L + K S EM + +Q V + L TH
Sbjct: 450 PLMNTSFAAKNPEIVQALNKLANKISETDMQEMNYEVNVKQQSAATVAKHYLVTHQ 505
>gi|161502139|ref|YP_001569251.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. arizonae serovar 62:z4,z23:-- str.
RSK2980]
gi|160863486|gb|ABX20109.1| hypothetical protein SARI_00162 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 331
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 42/326 (12%), Positives = 88/326 (26%), Gaps = 39/326 (11%)
Query: 1 MYKILAVCLFLTTFSISYARD---ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M + T + A V + ++ + T + S LE LGY
Sbjct: 1 MRHTVIFASAFATLVTASAWASDLPGKGITVHPIQSTISEESFQTLLVSRALE-KLGYTV 59
Query: 58 -NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ V + S+ + W P + A + + GA +
Sbjct: 60 NKPSEVDYNVGYTSIASGDATFTAVNWQPLHDDMYAAAGGDKKFYREGVFVSGAAQGYLI 119
Query: 117 NDVGFALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
+ + I + A + G PG I + K
Sbjct: 120 DKKTADQYNITNIAQLKDPKIAKIFDTNGDGKADMMGCSPGWGCEAVINHQNKAFEL-QK 178
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI--------- 218
+ + A + + P ++ +W P+ ++ + ++
Sbjct: 179 TVEVSHGNYAAMMADTITRFKEGKPVLYYTWTPYWVSDVMKPGKDVVWLQVPFSSLPGEQ 238
Query: 219 ------------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNK 266
GF +++ V + +K P ++L +K +A N ++ K
Sbjct: 239 KNINTKLPNGANYGFPVNTMHIVANKAWAEKNPAAAKLFAIMKLPLADINAQNAMMHAGK 298
Query: 267 QDRQFV---GRTMLRTHPDLLKNWLI 289
V + H W+
Sbjct: 299 SSEADVQGHVDGWINAHQQQFDGWVK 324
>gi|295095969|emb|CBK85059.1| Periplasmic glycine betaine/choline-binding (lipo)protein of an
ABC-type transport system (osmoprotectant binding
protein) [Enterobacter cloacae subsp. cloacae NCTC 9394]
Length = 299
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 43/301 (14%), Positives = 91/301 (30%), Gaps = 39/301 (12%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL- 62
+ A+C S + A P+ A +T+ +AMT L++ G++ +
Sbjct: 7 LTALCAAALFTSQALAA------PLILATKSFTEQHILSAMTVQYLQKK-GFQVQPQTNI 59
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPS---------------LEKFIAPYLEEGSIKLVAENL 107
A ++ ++ NK ID+ Y S + + + + +
Sbjct: 60 ATVISRNAMINKQIDMTWEYTGTSLIIFNHINKRMSPQESYETVKRLDAKHGLVWLKPAD 119
Query: 108 QGAKYMLAVNDVGFALGIKSYQ--------DIAKYKKELGAKIYGIEPGNEGNQRILDMI 159
Y A+ + I K + + + + +
Sbjct: 120 MNNTYAFAMQRKRAEAEHITTMSEMVAKIEQIRKTDPDNNWLLGLDLEFAGRSDGMKPLQ 179
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
L ++ + + R+ L + ++ L +
Sbjct: 180 AAYNMELDRPQIRQMDPG----LVYNAVRDGFVDAGLIYTTDGRVKGFDLKVLEDDKGFF 235
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+V VVR D L+ P + L + + + + E+ K + + Q Q V R L
Sbjct: 236 --PSYAVTPVVRKDTLEANPGLEEALNTLSAQLNNDVITELNKKVDIDHQSPQQVARDFL 293
Query: 278 R 278
R
Sbjct: 294 R 294
>gi|296102565|ref|YP_003612711.1| putative osmoprotectant transport system substrate-binding protein
[Enterobacter cloacae subsp. cloacae ATCC 13047]
gi|295057024|gb|ADF61762.1| putative osmoprotectant transport system substrate-binding protein
[Enterobacter cloacae subsp. cloacae ATCC 13047]
Length = 299
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 41/304 (13%), Positives = 91/304 (29%), Gaps = 36/304 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M I ++ + A P+ A +T+ +AMT L++ G++ +
Sbjct: 1 MRLISSLTALCAAALFTSQAIAA---PLILATKSFTEQHILSAMTVQYLQKK-GFQVQPQ 56
Query: 61 LL-AVPVTFRSLKNKGIDIFMGYWYPS---------------LEKFIAPYLEEGSIKLVA 104
A ++ ++ NK ID+ Y S + + + + +
Sbjct: 57 TNIATVISRNAMINKQIDMTWEYTGTSLIIFNHINKRMSPQESYETVKRLDAKHGLVWLK 116
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQ--------DIAKYKKELGAKIYGIEPGNEGNQRIL 156
Y A+ + + K + + + +
Sbjct: 117 PADMNNTYAFAMQRKRAEAEHINTMSEMVAKIEQVRKTNPDKNWLLGLDLEFAGRSDGMK 176
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ +L ++ + + R+ L + ++ L +
Sbjct: 177 PLQKAYNMALDRPQIRQMDPG----LVYNAVRDGFVDAGLIYTTDGRVKGFDLKVLEDDK 232
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+V VVR D L+ P + L + + + + E+ K + + Q Q V R
Sbjct: 233 GFF--PSYAVTPVVRKDTLEANPGLEEALNTLSAQLNNDVITELNKKVDIDHQSPQQVAR 290
Query: 275 TMLR 278
LR
Sbjct: 291 DFLR 294
>gi|238025062|ref|YP_002909294.1| glycine betaine/choline/proline family ABC transporter periplasmic
ligand binding protein [Burkholderia glumae BGR1]
gi|237879727|gb|ACR32059.1| ABC glycine betaine/choline/proline family transporter, periplasmic
ligand binding protein [Burkholderia glumae BGR1]
Length = 320
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 37/296 (12%), Positives = 82/296 (27%), Gaps = 30/296 (10%)
Query: 9 LFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL-AVPVT 67
+ + A + + +T+ +TS L GY + +
Sbjct: 30 IVSLASFGALATAPAAAQSLTVGGKNFTEQYVLAEITSQYLRSR-GYTIETRTGLGSVLL 88
Query: 68 FRSLKNKGIDIFMGYWYPS---------------LEKFIAPYLEEGSIKLVAENLQGAKY 112
+ N ID+ Y + + + + + + + Y
Sbjct: 89 RSAFVNGQIDLMWDYTGTAALVYDKIKDKLSPDEMYRRVKEIDARRGLVWLDASPLNNTY 148
Query: 113 MLAVNDVGFAL-GIKSYQDIAKYKKELG----AKIYGIEPGNEGNQRILDMINNNKFSLK 167
LA+ GI++ +A + + +
Sbjct: 149 ALALPAEAAKRTGIRTISQLAAKIASDPKGTRHTFGMDAEFANRPDGLKPLEAAYHLQFR 208
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
+ + + N+ + L + I L ++ F +
Sbjct: 209 RSEIRQMDAG----LVYTALHNDQLTIGLVYTTDGRVRGFGIVPLED--DLHFFPPYNAT 262
Query: 228 TVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRTHP 281
VVR++ L + P ++ L + + + +M K + + Q V LRTHP
Sbjct: 263 PVVRAEVLQRNPKLAAQLNALSAALNNDVMLDMNKRVDIDGASVQQVAADFLRTHP 318
>gi|251811861|ref|ZP_04826334.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Staphylococcus epidermidis
BCM-HMP0060]
gi|251804658|gb|EES57315.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Staphylococcus epidermidis
BCM-HMP0060]
Length = 297
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 29/292 (9%), Positives = 76/292 (26%), Gaps = 27/292 (9%)
Query: 10 FLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL----LAVP 65
L+ S+ D ++ V+ T ++ M +++E K L +
Sbjct: 1 MLSGCSLPGLGDGNAKDDVKITTTETSETKIIGHMEKLLIEHETDGKIKPTLIGNLGSSI 60
Query: 66 VTFRSLKNKGIDIFMGYWY---------------PSLEKFIAPYLEEGSIKLVAENLQGA 110
+ +L+ ++ + P L + + G
Sbjct: 61 IQHNALQRGDANMSAVRYTGTELTSVLAAKPTKDPDKAMSETQRLFKKKYDEKFYHSLGF 120
Query: 111 KYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
A + ++ +K G++ + K
Sbjct: 121 ANTYAFMVTKETAKKYHLEKVSDLEKYKDELRLGMDTQWMNRAGDGYPAFVKDYGFKF-- 178
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
+++ + +NN V + + + ++ L + +
Sbjct: 179 --DSARPMQIGLVYDALKNNKLDVAVGYSTDGRIAAYDLKILEDDRKFF--PPYDGSPLA 234
Query: 231 RSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ P I + LK + K S ++ ++ + L+ H
Sbjct: 235 NEQLIKNNPEIDKALKKLEGKISTEEMQKLNYEADGKGKEPAVIAEEYLKKH 286
>gi|332711923|ref|ZP_08431853.1| ABC-type proline/glycine betaine transport system, permease
component [Lyngbya majuscula 3L]
gi|332349251|gb|EGJ28861.1| ABC-type proline/glycine betaine transport system, permease
component [Lyngbya majuscula 3L]
Length = 664
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 41/339 (12%), Positives = 88/339 (25%), Gaps = 52/339 (15%)
Query: 4 ILAVCLFLTTFSI--------------SYARDADSCTPVRFADTGWTDIAATTAMTSVIL 49
+ + L S V+ + + T + ++ L
Sbjct: 326 TVGATILLALLGFMTWQQPSQAQVSTDSTLAMPGKGVSVQSVYSSLQEEQFQTEIVNIGL 385
Query: 50 EEILGYKTN-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQ 108
E LGY K + + +L N +D W F+ E ++ +
Sbjct: 386 E-KLGYTIKQPKQIEYVTAYLALGNGDLDYTAVNWDIGHRPFVEKSGGEQKLERLGVITS 444
Query: 109 GAKYMLAVNDVGFALGIKSY---------QDIAKYKKELGAKIYGIEPGNEGNQRILDMI 159
++ + + + A + G G I +
Sbjct: 445 DLWQGYQIDKKTADKYNITNLEQLKDPKIAKLFDSDGDGKANLIGCNSGWFCEIMIEHHL 504
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINS----DLNIHYLPGG 215
+ + A P ++ +W P + + D ++ +L
Sbjct: 505 KAYGLEDT-VEQDQGTYSALIVDAITRYNQGQPILYYTWTPMWMAAVLKPDQDVVWLEVP 563
Query: 216 E-------------------EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALEN 256
+ GF + V ++ P RL + I V N
Sbjct: 564 FTDLPESQKDLTAKDTSVNGKNLGFAIDRIRIVANKKFVSANPAAKRLFELIHIPVQDIN 623
Query: 257 ---EMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVT 292
E++ ++ +D + + H DL +W+
Sbjct: 624 TQNELLNQGEDSSKDIRHHAEEWINNHQDLFDSWVEDAR 662
>gi|260662063|ref|ZP_05862959.1| glycine/betaine ABC transporter substrate binding component
[Lactobacillus fermentum 28-3-CHN]
gi|222355236|gb|ACM48348.1| mucus and mucin binding protein precursor [Lactobacillus fermentum]
gi|260553446|gb|EEX26338.1| glycine/betaine ABC transporter substrate binding component
[Lactobacillus fermentum 28-3-CHN]
gi|299783234|gb|ADJ41232.1| Glycine/betaine ABC superfamily ATP binding cassette transporter
substrate binding protein [Lactobacillus fermentum CECT
5716]
Length = 300
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 40/306 (13%), Positives = 97/306 (31%), Gaps = 34/306 (11%)
Query: 1 MYK-------ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL 53
M K +AV + A+S TP+ +T+ + + ++ LE+
Sbjct: 1 MRKWVRRLVATVAVTALGALALPTTGFAANSKTPIIVGSKSFTESKVVSEIYALALEKA- 59
Query: 54 GYKTNIKLL-AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP----------------YLE 96
GYK K + V F++++ ID++ Y ++ ++ +
Sbjct: 60 GYKVTRKQNISNSVVFKAVQTGQIDVYPEYTGTIVDAYLKQSTTNKNAKQIAAAAKKGVA 119
Query: 97 EGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
+ + + +AV + KK + ++ +
Sbjct: 120 KYKLTTLTPAPGNDSQGIAVTTKVAKKYGLYTISDLQ-KKANKIRFVSQGEFDQRADALP 178
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
M+ ++S+ S + ++ N Y +
Sbjct: 179 GMVKKYGKFD-----FKSSKDYDDSLKYKILSEGKGDAAPVSTTDGQLANGN-KYTLLKD 232
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ + ++ +VR+ L P +++ L + K + E+ K + + Q+ Q V +
Sbjct: 233 DKHLWPAYNLVPLVRNSTLKSHPKMAKALNQVDKKLTTKTLTELNKKVDVDGQNYQTVAK 292
Query: 275 TMLRTH 280
+
Sbjct: 293 NWFNKN 298
>gi|51244060|ref|YP_063944.1| glycine betaine transporter periplasmic subunit [Desulfotalea
psychrophila LSv54]
gi|50875097|emb|CAG34937.1| probable glycine betaine/L-proline binding protein (ProX)
[Desulfotalea psychrophila LSv54]
Length = 348
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 53/334 (15%), Positives = 94/334 (28%), Gaps = 50/334 (14%)
Query: 4 ILAVCLFLTTFSISYARDADSCTP-----VRFADTGWTDIAATTAMTSVILEEILGYKTN 58
++ + LT + S A A++ P V+ A W A+ L LGYK
Sbjct: 10 LIVSAMSLTALTTSSASTANTELPGEGIRVQPARASWNTGFFQEALVRKGL-SELGYKVK 68
Query: 59 IKLLAVPVTFRSLKN-KGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
P F ID + W+P + + EE + K+ G V+
Sbjct: 69 KPKDLSPPIFYKSVTLGDIDYWTNGWFPMHDAQLPKNFEEKAQKVGYVIKAGGMQGYMVS 128
Query: 118 DVGFALGIKSYQDIAKYKK---------ELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
+ K ++ A + G + I ++
Sbjct: 129 KKEADKFGITSLADFKREEVKKAFDKNNNGKADLVACPGGWACEKIIDHHLDVYGLEDDV 188
Query: 169 FRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE----------- 217
+ + E A + RN+ P F +W P+ +
Sbjct: 189 TPIKASYEAAMAGALAE-YRNDEPVFFYTWAPNWTIFKMKPGKDVVWINVPEIKPTEAQK 247
Query: 218 -------------------ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEM 258
GF + V V +L K P R + ++ NE
Sbjct: 248 SAAERMTAENIDGAVSNPIKLGFVVSDVQIVANKKFLAKNPAAKRFFEVFTLPLSDINEQ 307
Query: 259 MKLILNNKQDRQFV---GRTMLRTHPDLLKNWLI 289
+ ++ R+ + + H L +WL
Sbjct: 308 NTRMNEGEKSRKDINRHADEWIAKHTTLWNSWLN 341
>gi|328555094|gb|AEB25586.1| Glycine betaine/carnitine/choline-binding protein OpuCC [Bacillus
amyloliquefaciens TA208]
Length = 305
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 30/279 (10%), Positives = 71/279 (25%), Gaps = 25/279 (8%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--LLAVPVTFRSLKNKGIDI 78
S ++ T+ M + ++E T + L + V +++ IDI
Sbjct: 29 SGASDDTIKIGAQSITESEIIANMLAQMIEHNTDLNTALIKNLGSNYVQQQAMLGGEIDI 88
Query: 79 FMGYW---------------YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+ P I E + G + A
Sbjct: 89 AATRYSGTDLTSTLGMEAEKDPKKALSIVQKEFEKRFHYKWFDSYGFENTYAFTVSKELA 148
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
++ KK G++ + + + + + +
Sbjct: 149 EKDHLDKVSDIKKYADQFKLGVDNAWLKRKGDGYKGFTDTYGFEFGT----TYPMQIGLV 204
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
+N L++ ++ L + F V+ L + P +
Sbjct: 205 YDAVKNGKMDAVLAYSTDGRIKAYDLKILKD--DKQFFPPYDCSPVIPDSVLKQHPELKG 262
Query: 244 LLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
++ + K E+ + ++ V + L H
Sbjct: 263 IVNKLIGKIDTETMQELNYEVDGKLKEPSVVAKEFLEKH 301
>gi|46015450|pdb|1R9L|A Chain A, Structure Analysis Of Prox In Complex With Glycine Betaine
gi|46015451|pdb|1R9Q|A Chain A, Structure Analysis Of Prox In Complex With Proline Betaine
Length = 309
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 39/304 (12%), Positives = 88/304 (28%), Gaps = 35/304 (11%)
Query: 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKLLAVPVTFRSLKNKGID 77
A V + T+ T + S LE LGY + V + SL +
Sbjct: 1 ADLPGKGITVNPVQSTITEETFQTLLVSRALE-KLGYTVNKPSEVDYNVGYTSLASGDAT 59
Query: 78 IFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQ-------- 129
W P + + + GA ++ +
Sbjct: 60 FTAVNWTPLHDNMYEAAGGDKKFYREGVFVNGAAQGYLIDKKTADQYKITNIAQLKDPKI 119
Query: 130 -DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQR 188
+ + A + G PG I + + + + + A + +
Sbjct: 120 AKLFDTNGDGKADLTGCNPGWGCEGAINHQLAAYELT-NTVTHNQGNYAAMMADTISRYK 178
Query: 189 NNIPAVFLSWEPHPINSD----LNIHYLPGGEEI----------------SGFGEASVYT 228
P + +W P+ ++++ ++ +L GF ++++
Sbjct: 179 EGKPVFYYTWTPYWVSNELKPGKDVVWLQVPFSALPGDKNADTKLPNGANYGFPVSTMHI 238
Query: 229 VVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV---GRTMLRTHPDLLK 285
V + +K P ++L ++ VA N ++ + K + ++ H
Sbjct: 239 VANKAWAEKNPAAAKLFAIMQLPVADINAQNAIMHDGKASEGDIQGHVDGWIKAHQQQFD 298
Query: 286 NWLI 289
W+
Sbjct: 299 GWVN 302
>gi|218673145|ref|ZP_03522814.1| Mandelate racemase/muconate lactonizing protein [Rhizobium etli
GR56]
Length = 637
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 36/224 (16%), Positives = 58/224 (25%), Gaps = 13/224 (5%)
Query: 1 MYKILAVCLFLTTFSISYA-RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M K+LA L + + A C V A T + ILE G
Sbjct: 390 MKKLLASTCLLAGLAGGASLSHAAECGDVVLAVHNAQSAEVLTFVDKFILENGYGCNVET 449
Query: 60 KLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVN 117
P T ++ D+ W L + + ++EG I A L G +
Sbjct: 450 VPGDTVPTTTSMVEKSEPDVSSETWVDLLPEIVPRGIQEGKIVFGAPALPDGGIQGWWIP 509
Query: 118 DVGFALG---------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
+ + I+ G + K + KG
Sbjct: 510 KYVADAHPEIKTVEDALAHPDLFPDQEDPSKGVIFNGAEGWGATVVTTQLFKAYKAADKG 569
Query: 169 FRLI-EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHY 211
F L+ S I + + W P + +
Sbjct: 570 FTLMNPGSSAGLDGAIGKAYERKQGFITYYWAPTALLGKYQLVM 613
>gi|184155424|ref|YP_001843764.1| glycine/betaine ABC transporter substrate binding component
[Lactobacillus fermentum IFO 3956]
gi|183226768|dbj|BAG27284.1| glycine/betaine ABC transporter substrate binding component
[Lactobacillus fermentum IFO 3956]
Length = 300
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 40/306 (13%), Positives = 96/306 (31%), Gaps = 34/306 (11%)
Query: 1 MYK-------ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL 53
M K +AV + A+S TP+ +T+ + ++ LE+
Sbjct: 1 MRKWVRRLVATVAVTALGALALPTTGFAANSKTPIIVGSKSFTESKVVGEIYALALEKA- 59
Query: 54 GYKTNIKLL-AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP----------------YLE 96
GYK K + V F++++ ID++ Y ++ ++ +
Sbjct: 60 GYKVTRKQNISNSVVFKAVQTGQIDVYPEYTGTIVDAYLKQSTTNKNAKQIAAAAKKGVA 119
Query: 97 EGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
+ + + +AV + KK + ++ +
Sbjct: 120 KYKLTTLTPAPGNDSQGIAVTTKVAKKYGLYTISDLQ-KKANKIRFVSQGEFDQRADALP 178
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
M+ ++S+ S + ++ N Y +
Sbjct: 179 GMVKKYGKFD-----FKSSKDYDDSLKYKILSEGKGDAAPVSTTDGQLANGN-KYTLLKD 232
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ + ++ +VR+ L P +++ L + K + E+ K + + Q+ Q V +
Sbjct: 233 DKHLWPAYNLVPLVRNSTLKSHPKMAKALNQVDKKLTTKTLTELNKKVDVDGQNYQTVAK 292
Query: 275 TMLRTH 280
+
Sbjct: 293 NWFNKN 298
>gi|229822526|ref|YP_002884052.1| Substrate-binding region of ABC-type glycine betaine transport
system [Beutenbergia cavernae DSM 12333]
gi|229568439|gb|ACQ82290.1| Substrate-binding region of ABC-type glycine betaine transport
system [Beutenbergia cavernae DSM 12333]
Length = 298
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 51/285 (17%), Positives = 107/285 (37%), Gaps = 10/285 (3%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFA-DTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
L + +T + + A GW D A++ + +LEE GY I+ +
Sbjct: 18 LGLAACSSTEESAAEAPNGDVGEITLAAVPGWDDTIASSVLWEAVLEEQ-GYDVTIEYID 76
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
V F + + D+++G W P+ + +++V + A+ AVN
Sbjct: 77 VAPAFIGVSSGTYDLYLGSWLPTTHGDYYEQYGD-DMEVVGVWNRDARNTFAVN---ADA 132
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
I S +D+A+ +I G+E G + + D + + L+ + +S A +++
Sbjct: 133 PIDSIEDLAENADLFENRIIGVEAGAGLTRLVEDDV-IPTYGLEEMEFVTSSTPAMLAEL 191
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
+ + W+PH D ++ L E G G + + R+ + D P
Sbjct: 192 DGAMASGDDILVTLWQPHWAYGDYDLKNLEDPEGTLG-GAEEITILSRTGFADDAPVAHG 250
Query: 244 LLKNIKFSVALENEMMKLI--LNNKQDRQFVGRTMLRTHPDLLKN 286
L + + + L + + N + T + + + +
Sbjct: 251 WLSDFEMDLDLFATLEAALFQGNETTEYDDQIATWIDENREWVDT 295
>gi|302337525|ref|YP_003802731.1| substrate-binding region of ABC-type glycine betaine transporter
[Spirochaeta smaragdinae DSM 11293]
gi|301634710|gb|ADK80137.1| Substrate-binding region of ABC-type glycine betaine transport
system [Spirochaeta smaragdinae DSM 11293]
Length = 312
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 39/310 (12%), Positives = 88/310 (28%), Gaps = 39/310 (12%)
Query: 3 KILAVCLFLTTFSISY---------ARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL 53
+I A + S A + V +T+ M + +L
Sbjct: 6 RIFAAFAIVVLTSAILFPGCAKKEEAGKEEQKGRVTVGAKNFTEQYIVGNMMAELLRNK- 64
Query: 54 GYKTNIKLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFI-----------------APYL 95
G++ + L+ D++ Y + ++ L
Sbjct: 65 GFEVKEQFGTGSKITRDGLETGQTDLYAEYTGTAWSVYLGHDTTITDPETLFAKVKEEDL 124
Query: 96 EEGSIKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKI-YGIE-PGNEGN 152
+ +I + Y LA+ L I S ++A Y + + +GI+ E
Sbjct: 125 ADHNIVWLDRWELNNTYALAMKQDEAKELDIASIGNLASYVSKQPEALNFGIDQEFYERP 184
Query: 153 QRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYL 212
M F++ ++ S V + + + + L
Sbjct: 185 DGFFKMAETYDFTVAKKQVKTMDVGLS----YEALDRGQVDVAMVFATDGLLKKYGLRVL 240
Query: 213 PGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQ 270
+ ++ VR + +DK P I+ ++K + + + +
Sbjct: 241 SDDKNFF--PVYNLAVTVRKEVIDKHPEIADIMKPLAQLLDDTTMQGLNYRVDAEGLPAK 298
Query: 271 FVGRTMLRTH 280
V + L+ +
Sbjct: 299 MVAQEFLKDN 308
>gi|257423929|ref|ZP_05600358.1| glycine betaine/carnitine/choline ABC transporter opuCC
[Staphylococcus aureus subsp. aureus 55/2053]
gi|257272947|gb|EEV05049.1| glycine betaine/carnitine/choline ABC transporter opuCC
[Staphylococcus aureus subsp. aureus 55/2053]
Length = 313
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 29/289 (10%), Positives = 73/289 (25%), Gaps = 27/289 (9%)
Query: 13 TFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL----LAVPVTF 68
S+ + V+ ++ + M +++E K L + +
Sbjct: 20 GCSLPGLGSKSTKNDVKITALSTSESQIISHMLRLLIEHDTHGKIKPTLVNNLGSSTIQH 79
Query: 69 RSLKNKGIDIF-MGYWYPSLEKFIAPYL--------------EEGSIKLVAENLQGAKYM 113
+L N +I + Y L + + N G
Sbjct: 80 NALINGDANISGVRYNGTDLTGVLKEAPIKDPKKAMIATQQGFKKKFDQTFFNSYGFANT 139
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
A + ++ K G++ + ++ +
Sbjct: 140 YAFMVTKETAKKYHLETVSDLAKHSKDLRLGMDSSWMNRKGDGYEGFKKEYGFDFGTVRP 199
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+ + V L + + ++ L + F +V V ++
Sbjct: 200 ----MQIGLVYDALNSEKLDVALGYSTDGRIAAYDLKVLKD--DKQFFPPYAVSAVATNE 253
Query: 234 YLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
L + P + + + K S + + ++ V L+ H
Sbjct: 254 LLRQHPELKTTINKLTGKISTSEMQRLNYEADGKGKEPAVVAEEFLKKH 302
>gi|167465080|ref|ZP_02330169.1| OpuCC [Paenibacillus larvae subsp. larvae BRL-230010]
Length = 297
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 31/299 (10%), Positives = 89/299 (29%), Gaps = 26/299 (8%)
Query: 1 MYKILA--VCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M KI+ L + + + + ++ +M +++E+ K +
Sbjct: 1 MKKIIKRMSLLVIVSALVMTITGCGKSDRIIIGTQTSSEPKILASMYKLLIEDRTDLKVD 60
Query: 59 IKL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLV------------- 103
+ + PV ++K I + Y + + +++
Sbjct: 61 VLPDLASSPVVISAMKKGEIQMATLYTGEIFNNYFPVKETKDRGEVLKQAQEGFKEHFNF 120
Query: 104 -AENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
+ G + A + + I+ K G++ +
Sbjct: 121 KWFDPLGFENTYAFTVRSELAKENNLKTISDVKNMASKMTLGVDTTWLERENDGYPAFTK 180
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
+ ++ + + + + + + L++ + N+ L + F
Sbjct: 181 YYDIQFGQ----TLPMEIALVYNAVASKKVDIVLAYSTDARLKEYNLQTLVD--DKQFFP 234
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
V++ + LD P I+ ++ + K + + NK++ + V L+
Sbjct: 235 PYDASPVIKQEVLDAHPEIAEVIGELIGKIDAETMINLNYEVDVNKRNEKKVAEEYLKK 293
>gi|209809003|ref|YP_002264541.1| ABC-type glycine betaine transport system,substrate binding domain
[Aliivibrio salmonicida LFI1238]
gi|208010565|emb|CAQ80935.1| ABC-type glycine betaine transport system,substrate binding domain
[Aliivibrio salmonicida LFI1238]
Length = 258
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 43/257 (16%), Positives = 87/257 (33%), Gaps = 3/257 (1%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWY 84
+ T + T ++ + +L + +G++ + + F LK ID+ W
Sbjct: 2 KNKITLGVTNLSFHQLTASIITHVLVD-MGFEVDRIYSSHQDNFEKLKLGDIDMLASAWL 60
Query: 85 PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKI 142
PS +EE L + V D + D+ K + + I
Sbjct: 61 PSSHGIYKSDVEETVELLELGLHYKPYALWGVPDYIPEESVSEINDLLKPEVLSCMNKNI 120
Query: 143 YGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP 202
GI PG + + M++ S G+ SE F+ + N + W+P
Sbjct: 121 QGINPGAGITRFSIKMMDAYDLSHAGYIFHTGSEEDCFAAFEQAVENKEWVIVPLWKPQF 180
Query: 203 INSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI 262
++ I + + + G + +V + + R L ++ FS + + +
Sbjct: 181 LHHKYTIREISEPKGLLGIVDRAVLLLRQDRATYFTQEQIRRLDSLTFSNEIIAALDYQV 240
Query: 263 LNNKQDRQFVGRTMLRT 279
+D V + L
Sbjct: 241 SREGKDIDEVTKQWLNN 257
>gi|218248512|ref|YP_002373883.1| glycine betaine ABC transporter substrate binding protein
[Cyanothece sp. PCC 8801]
gi|218168990|gb|ACK67727.1| Substrate-binding region of ABC-type glycine betaine transport
system [Cyanothece sp. PCC 8801]
Length = 520
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 30/304 (9%), Positives = 74/304 (24%), Gaps = 36/304 (11%)
Query: 2 YKILAVCLFLTTFSISYAR--------DADSCTPVRFADTGWTDIAATTAMTSVILEEIL 53
K L + L S + V +T+ + + +E
Sbjct: 218 KKSLIIFGILGLILFSLLGIFHQKIFLTNQASGIVIIGSKNFTEQVILGEVLAQSIEAKT 277
Query: 54 GYKTNIKL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP----------------YL 95
K + K + ++L+ + ID ++ Y + + Y
Sbjct: 278 NLKVDRKFNLGGTFICHQALQARKIDGYVEYTGTAFTAILEQKPINNPQTVYEKIKQVYH 337
Query: 96 EEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRI 155
++ +++++ Y + V A +G
Sbjct: 338 DQFNLEVMPSLGFENTYAILVRQKDAKQYQLKTISDASQYSPQWQAGFG-HEFLSREDGY 396
Query: 156 LDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG 215
+ + + R N + LN+ L
Sbjct: 397 PGLAKTYNL-----NFATLPKTMELGLMYRALANQEIDLAAGNSTDGTIPILNLTILEDN 451
Query: 216 EEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVG 273
++ + + PN+ +++ + K S ++ + K+ V
Sbjct: 452 KKYF--PPYEAVPIFNQETFKDYPNLRSIIEQLAGKISAQEMQQLNYQVDGEKKSVNEVV 509
Query: 274 RTML 277
L
Sbjct: 510 HKFL 513
>gi|322383297|ref|ZP_08057097.1| choline ABC transporter-like protein [Paenibacillus larvae subsp.
larvae B-3650]
gi|321152417|gb|EFX45216.1| choline ABC transporter-like protein [Paenibacillus larvae subsp.
larvae B-3650]
Length = 302
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 31/299 (10%), Positives = 89/299 (29%), Gaps = 26/299 (8%)
Query: 1 MYKILA--VCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M KI+ L + + + + ++ +M +++E+ K +
Sbjct: 6 MKKIIKRMSLLVIVSALVMTITGCGKSDRIIIGTQTSSEPKILASMYKLLIEDRTDLKVD 65
Query: 59 IKL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLV------------- 103
+ + PV ++K I + Y + + +++
Sbjct: 66 VLPDLASSPVVISAMKKGEIQMATLYTGEIFNNYFPVKETKDRGEVLKQAQEGFKEHFNF 125
Query: 104 -AENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
+ G + A + + I+ K G++ +
Sbjct: 126 KWFDPLGFENTYAFTVRSELAKENNLKTISDVKNMASKMTLGVDTTWLERENDGYPAFTK 185
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
+ ++ + + + + + + L++ + N+ L + F
Sbjct: 186 YYDIQFGQ----TLPMEIALVYNAVASKKVDIVLAYSTDARLKEYNLQTLVD--DKQFFP 239
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
V++ + LD P I+ ++ + K + + NK++ + V L+
Sbjct: 240 PYDASPVIKQEVLDAHPEIAEVIGELIGKIDAETMINLNYEVDVNKRNEKKVAEEYLKK 298
>gi|330685201|gb|EGG96864.1| glycine betaine/carnitine/choline-binding protein [Staphylococcus
epidermidis VCU121]
Length = 317
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 33/309 (10%), Positives = 79/309 (25%), Gaps = 35/309 (11%)
Query: 1 MYK--------ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEI 52
M K I L L+ S+ D +S V+ T ++ M +++E
Sbjct: 1 MKKHIKYTVILIALSLLVLSGCSLPGLGDGNSKNDVKITTTETSETKIIANMEKLMIEHE 60
Query: 53 LGYKTNIKL----LAVPVTFRSLKNKGIDIFMGYWY---------------PSLEKFIAP 93
K + + + +L+ +++ + P +
Sbjct: 61 TKGKIKPTIIGNLGSSIIQHNALQRGDVNMSAVRYTGTELTSVLDAKPTKDPKKAMAESQ 120
Query: 94 YLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQ 153
L + N G A + ++ +K G++
Sbjct: 121 RLFKKKYDQKYYNSLGFANTYAFMVTKETAKKYHLEKVSDLEKHKDELRLGMDTQWMNRA 180
Query: 154 RILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLP 213
+ K ++ + +N V + + + ++ L
Sbjct: 181 GDGYPAFVKDYGFKF----ASARPMQIGLVYDALKNKKLDVAVGYSTDGRIAAYDLKILK 236
Query: 214 GGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQF 271
+ + + P I LK + K S ++ ++
Sbjct: 237 DDRKFF--PPYDGSPLATEKVIKDNPKIDTALKKLEGKVSTKEMQKLNYEADGKGKEPAI 294
Query: 272 VGRTMLRTH 280
+ L+ H
Sbjct: 295 IAEEYLKKH 303
>gi|300716567|ref|YP_003741370.1| Substrate-binding region of ABC-type glycine betaine transport
system [Erwinia billingiae Eb661]
gi|299062403|emb|CAX59520.1| Substrate-binding region of ABC-type glycine betaine transport
system [Erwinia billingiae Eb661]
Length = 308
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 35/297 (11%), Positives = 85/297 (28%), Gaps = 33/297 (11%)
Query: 8 CLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL-AVPV 66
+ +++ + + P+ A +T+ +A+T+ L + G++ K A +
Sbjct: 14 TALALSATLAMSATVAAAEPIVMATKSFTEQHILSALTTQYLRKK-GFQIEAKTNIATTI 72
Query: 67 TFRSLKNKGIDIFMGYWYPS---------------LEKFIAPYLEEGSIKLVAENLQGAK 111
++ NK +D+ Y S + + + + +
Sbjct: 73 GRNAMINKQVDMTWEYTGTSLIIFNHINKPMSSKEAYETVKNLDAKLGLVWLNPAPMNNT 132
Query: 112 YMLAVNDVGFALGIKSYQ--------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK 163
Y A+ ++ K + + + + +
Sbjct: 133 YAFAMQRKRADEEHIDTMSQLVAKIEEVRKNDPDHNWMLGLDLEFAGRSDGMKPLQKAYN 192
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
L ++ + + R+ L + + L +
Sbjct: 193 MPLDRPQIRQMDPG----LVYNAIRDGFVDAGLIYTTDGRVKGFELKVLKDDKNFF--PS 246
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLR 278
+V VV + LD P ++ L + + EM K + + Q Q V L+
Sbjct: 247 YAVTPVVTKETLDSHPGLADALNTLSPFITDEAITEMNKRVDIDHQSPQTVASDFLK 303
>gi|306833713|ref|ZP_07466840.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, binding protein [Streptococcus bovis ATCC
700338]
gi|304424483|gb|EFM27622.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, binding protein [Streptococcus bovis ATCC
700338]
Length = 306
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 46/306 (15%), Positives = 96/306 (31%), Gaps = 40/306 (13%)
Query: 2 YKILAVCLFLTTFSIS-----------YARDADSCTPVRFADTGWTDIAATTAMTSVILE 50
K+++ L + + S T +R +T+ + ++ LE
Sbjct: 4 KKVISGALLVVILVAIVGGIWAWRNNQSSEVQQSSTTIRVGSKDFTENLVIAEIYALALE 63
Query: 51 EILGYKTNIKLL-AVPVTFRSLKNKGIDIFMGYWYPSLEKFI----------------AP 93
+ GY + + S+ N ID++ Y L +
Sbjct: 64 DN-GYTVERVSNISSSLIHNSIVNDEIDLYPEYTGTGLLSVLGEDMETDPEKVYKTVKKE 122
Query: 94 YLEEGSIKLVAENLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKKELGAKIYGIEPGNEGN 152
Y E+ ++ + L + IK+ D+ + EL G +E
Sbjct: 123 YEEQFNLTWLDYASANDSQGLVIRTEVANSLNIKTISDLQAHASELRFASQG--EFDERE 180
Query: 153 QRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYL 212
+L + ++S++ S N+ V ++ + L
Sbjct: 181 DGLLGLEKTYGTFNW-----QSSKVYDNSLKYSVLENDEADVTPAYTTEGQLVSTDKFTL 235
Query: 213 PGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQ 270
++ + ++ VVR + LD P+I +L NI K E+ + + Q+
Sbjct: 236 LEDDKQF-WPPYNLAPVVRDNILDDNPDIKTILNNISAKLDTETVTELNAKVDVDGQEYT 294
Query: 271 FVGRTM 276
V +
Sbjct: 295 DVAKEY 300
>gi|308175125|ref|YP_003921830.1| Glycine betaine/carnitine/choline-binding protein OpuCC [Bacillus
amyloliquefaciens DSM 7]
gi|307607989|emb|CBI44360.1| Glycine betaine/carnitine/choline-binding protein OpuCC [Bacillus
amyloliquefaciens DSM 7]
gi|328913449|gb|AEB65045.1| Glycine betaine/carnitine/choline-binding protein OpuCC [Bacillus
amyloliquefaciens LL3]
Length = 305
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 30/279 (10%), Positives = 71/279 (25%), Gaps = 25/279 (8%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--LLAVPVTFRSLKNKGIDI 78
S ++ T+ M + ++E T + L + V +++ IDI
Sbjct: 29 SGASDDTIKIGAQSITESEIIANMLAQMIEHNTDLNTALIKNLGSNYVQQQAMLGGEIDI 88
Query: 79 FMGYW---------------YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+ P I E + G + A
Sbjct: 89 AATRYSGTDLTSTLGMEAEKDPKKALSIVQKEFEKRFHYKWFDSYGFENTYAFTVSKELA 148
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
++ KK G++ + + + + + +
Sbjct: 149 EKDHLDKVSDIKKYADQFKLGVDNAWLKRKGDGYKGFTDTYGFEFGT----TYPMQIGLV 204
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
+N L++ ++ L + F V+ L + P +
Sbjct: 205 YDAVKNGKMDAVLAYSTDGRIKAYDLKILKD--DKQFFPPYDCSPVIPDSVLKQHPELKG 262
Query: 244 LLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
++ + K E+ + ++ V + L H
Sbjct: 263 IVNKLIGKIDTETMQELNYEVDGKLKEPSVVAKEFLEKH 301
>gi|239637806|ref|ZP_04678768.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Staphylococcus warneri
L37603]
gi|239596564|gb|EEQ79099.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Staphylococcus warneri
L37603]
Length = 308
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 45/301 (14%), Positives = 113/301 (37%), Gaps = 16/301 (5%)
Query: 1 MYKILAVCLFLTTFSISYARDADSC------TPVRFADTGWTDIAATTAMTSVILEEILG 54
++ +A+ + L+ + + + A T + + +L++ G
Sbjct: 12 LFATIALAIVLSACGNGGGSSSKDGNTSLGNKEIELPYIASDNSAPRTLIIAEVLKKA-G 70
Query: 55 YKTNIKLLA-VPVTFRSLKNKGIDIFMGYWYPSLEK-FIAPYLEEGSIKLVAENLQGAKY 112
Y + + S+ +PS +K + Y + S+ + K
Sbjct: 71 YDVTTTPVQASGPLYASVAENADSFHASGIFPSTDKSYYNQYKSKLSVYDKKNLVDDVKV 130
Query: 113 MLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
LAV I S D+ K+ +I G + N ++ ++ + G+ L
Sbjct: 131 GLAVPKY--EQNIDSIADLKDS-KKFDKEIQGTDARNGVMKQTKSELDEDNLD--GYSLK 185
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRS 232
E+S+ F +++ + P +F + + + +L + L ++I G + + V
Sbjct: 186 ESSDQDQFKAVQKAYKQQQPILFTAMDSSWFSKELGVKMLKDPDKIYGKEDQHINLVFNK 245
Query: 233 DYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIG 290
++ P + + +S E+++ K I ++++ + V + + + + + WL G
Sbjct: 246 EFKANHPAAYTIATRMSDDWSKKDEDQLAKKIFKDQKNPEQVAKDYVDDNDNKVDEWLEG 305
Query: 291 V 291
+
Sbjct: 306 I 306
>gi|308184603|ref|YP_003928736.1| osmoprotection protein (proWX) [Helicobacter pylori SJM180]
gi|308060523|gb|ADO02419.1| osmoprotection protein (proWX) [Helicobacter pylori SJM180]
Length = 553
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 30/278 (10%), Positives = 79/278 (28%), Gaps = 31/278 (11%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL---AVPVTFRSLKNKGID 77
+A P+ A ++ + S++LE+ +L D
Sbjct: 283 NAIEEKPLVVATKPSSEQYILGEILSLLLEKH-HIPIKRVFGIGGGTMNIHPALLRGDFD 341
Query: 78 IFMGYWYPSLEKFIAP--------------YLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+++ Y + + Y +E ++ V Y LA++
Sbjct: 342 LYVEYTGTAWVNTLKNPLTQKVDFETIKKRYEKEFNLLWVGLLGFNNTYSLAISKEDAQK 401
Query: 124 GIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ + + +G E E ++ +F + +
Sbjct: 402 Y--TIETFSDLAFHSPNFDFGAEFDFFEREDAFKGLVKAYRF------HFRSLHEMDINL 453
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ ++ + +L++ L + V+R + + K P
Sbjct: 454 RYKSFESHKINALDVFTTDAQIKELDLKVLKDDKGFF--PNYQAGIVIRKETIKKYPEAL 511
Query: 243 RLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
+L+ + K + ++ + K+ + V + L
Sbjct: 512 EILEKLDSKINDETMQDLNYQVEVLKKSPKIVAKDFLE 549
>gi|188584763|ref|YP_001916308.1| Substrate-binding region of ABC-type glycine betaine transport
system [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179349450|gb|ACB83720.1| Substrate-binding region of ABC-type glycine betaine transport
system [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 313
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 40/308 (12%), Positives = 84/308 (27%), Gaps = 32/308 (10%)
Query: 1 MYKILAVCLFLTTFSISYAR------DADSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
M + + L+ + D + +T+ +T +LEE G
Sbjct: 3 MKNLAITLVILSMMLVGVGCGQDGEVQQDGDAVIAVGSKEFTEQLILGQLTIQLLEEE-G 61
Query: 55 YKT--NIKLLAVPVTFRSLKNKGIDIFMGYWYPS-----------------LEKFIAPYL 95
Y N L + + + +D+ Y + E L
Sbjct: 62 YDVIDNTGLSGTAILRDAFLDGEVDVKWEYTGTALISHLGHDEAITDSEECYEAVKEEDL 121
Query: 96 EEGSIKLVAENLQGAKYMLAVND-VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQR 154
EE + + Y L + + GI+S D+A+ E G E N+
Sbjct: 122 EENGVVWLDYAGLDNTYTLIMREDYAEEAGIQSMSDLAEAVNEGETPPTGGEWVLASNEE 181
Query: 155 ILDMINNNKFSLKGFRLIEASEL-ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLP 213
+ + + + I R+ V + + ++ L
Sbjct: 182 YATRDDGMEGVEETYGFEFEDVDIMEPGIIYGVVRDGEAPVGMGFMTDGRIDGYDLITLE 241
Query: 214 GGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQF 271
+ + VR + LD+ P + +L + ++ + + +
Sbjct: 242 DDKGFH--PAYNAAPNVREEVLDEHPELEDILAKLTERLDNETMQQLNAKVDIDGYQPEE 299
Query: 272 VGRTMLRT 279
L
Sbjct: 300 AAEEYLVE 307
>gi|327439398|dbj|BAK15763.1| ABC-type proline/glycine betaine transport systems, periplasmic
component [Solibacillus silvestris StLB046]
Length = 302
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 37/172 (21%), Positives = 72/172 (41%), Gaps = 4/172 (2%)
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
S + A +++ KI GIEPG D + + +L+G+ L E+S + +
Sbjct: 31 NSNNESASIGEQVDYKIIGIEPGAGITGLSHDTLEQYE-NLEGWTLQESSTAGMIGTLEQ 89
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
RN P + W PH + S ++ ++ + + G G ++ TVVR D P++ +L
Sbjct: 90 AIRNEDPVIVTGWTPHWMFSAYDLKFIEDPKGVLG-GAENINTVVRKDLEKDLPDVYTVL 148
Query: 246 KNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQ 297
+ ++M D + + + D + W G+ +G+
Sbjct: 149 DRFHWEPEDMEQVMY--DAQNGDFETAAAAWIENNDDKVSEWTKGIEQGNGE 198
Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 19/107 (17%), Positives = 44/107 (41%), Gaps = 2/107 (1%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFM 80
+ + V+ W A++++ ++L + LGY+ I + + F+++ D +
Sbjct: 193 EQGNGEKVKLVSVPWDSEIASSSVVKIVL-DNLGYQVEIIPVDPAIMFQAIATGEGDATV 251
Query: 81 GYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKS 127
W P+ + ++ I + ENL+G + V I+
Sbjct: 252 APWLPTTHQAFYEKHKD-DIVDLGENLEGTQNGFVVPAYMDIDSIED 297
>gi|145297976|ref|YP_001140817.1| glycine betaine transporter periplasmic subunit [Aeromonas
salmonicida subsp. salmonicida A449]
gi|142850748|gb|ABO89069.1| glycine betaine/L-proline transport system, periplasmic binding
protein [Aeromonas salmonicida subsp. salmonicida A449]
Length = 332
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 42/305 (13%), Positives = 96/305 (31%), Gaps = 32/305 (10%)
Query: 14 FSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRSLK 72
+++ A V+ + + T + S ++ LGY ++ + V + S+
Sbjct: 23 VAVASAESPGEGIRVQPLQSSLPEETFQTLLVSKLM-GRLGYDVQPVQEVDYNVAYASVA 81
Query: 73 NKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIA 132
W P + + GA ++ +
Sbjct: 82 QGDGTFLAFNWIPLQNNKYEQAGGDKVFFRQGTYVSGAAQGYLIDKKTATQYGITNLGQL 141
Query: 133 KYKK---------ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
K K + A + G PG + I ++ + + + A +
Sbjct: 142 KDPKLAALFDGDGDGKADLVGCNPGWGCEEAINHHLDAFGLT-PTVTHKQGNYAALIADT 200
Query: 184 RRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEEI-------------SGFGEASV 226
R ++ P ++ +W P+ ++S+ ++ +L GF S+
Sbjct: 201 RARYQSGKPVLYYTWTPYWLSSELVPGRDVVWLEVPANAKDSDKTRLPNGKNYGFPVNSM 260
Query: 227 YTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI---LNNKQDRQFVGRTMLRTHPDL 283
+ V + + P ++L +K + N L+ N + D + L+ H
Sbjct: 261 HIVANKGFTEANPAAAKLFSIVKLPLNDINIQNGLMNKGQNTQADIERHVMAWLKGHEAQ 320
Query: 284 LKNWL 288
+ +WL
Sbjct: 321 VNDWL 325
>gi|55233215|gb|AAV48567.1| OpuAC [Halobacillus trueperi]
Length = 311
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 41/185 (22%), Positives = 72/185 (38%), Gaps = 3/185 (1%)
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
Y +E+G +I GIE G + + + +L G+ + +S A +
Sbjct: 35 DSNGDETASEMNYGEEMGYEITGIEAGAGVVSSAENAVEEYE-NLSGWEVSTSSSGAMAA 93
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNI 241
+ N P V W PH + ++ YL +E+ G GE + T+VR D PN
Sbjct: 94 ALGEAIENEEPIVVTGWTPHWKFAKYDLKYLEDPKEVFG-GEEQIKTMVRQGLEDDKPNA 152
Query: 242 SRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSR 301
++L + A E+M I + + + + + D + W G DG +
Sbjct: 153 YKILDQFNWEAADMEEVMLEIS-DGASPEEAAQNWISNNQDKVDAWTEGTEEVDGTEVEL 211
Query: 302 QLERF 306
L +
Sbjct: 212 VLVNW 216
Score = 60.6 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 2/104 (1%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYW 83
T V W A+T + + +++E G++ I L + S+ D + W
Sbjct: 205 DGTEVELVLVNWDSEIASTNVVAEVMKEQ-GFEVTITPLDNGPMWESVAAGEADGMVAAW 263
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKS 127
P + ++ + NL+GAK L V + I+
Sbjct: 264 LPGTHGDQYE-QNKDKLEDLGANLEGAKIGLVVPEYMDVDSIED 306
>gi|239815501|ref|YP_002944411.1| glycine betaine transporter periplasmic subunit [Variovorax
paradoxus S110]
gi|239802078|gb|ACS19145.1| Substrate-binding region of ABC-type glycine betaine transport
system [Variovorax paradoxus S110]
Length = 336
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 45/331 (13%), Positives = 94/331 (28%), Gaps = 44/331 (13%)
Query: 1 MYKILAVCLFLTTFSISYAR----------DADSCTPVRFADTGWTDIAATTAMTSVILE 50
M K + L ++ +A V+ + + A T + LE
Sbjct: 1 MKKRTRLILARGLLALGFAAFGMGAQAANDLPGQGVTVQPLKSSLAEEAFQTLLVMRALE 60
Query: 51 EILGYKTN-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQG 109
LGY +K L ++ N +W F + + G
Sbjct: 61 -KLGYTVEPMKDLEPATEHLAIANGDATFMANHWSLLHADFYKNSGGDAKLWRKGVYSDG 119
Query: 110 AKYMLAVNDVGFALGI---------KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN 160
A ++ + + + A + G PG I + +
Sbjct: 120 AVQGYLIDRKTAEQYNIRSIAQLKDPAIARLFDADGDGKADLTGCNPGWGCELAIENHLT 179
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGE 216
+ + S A + + + P ++ +W P+ +++ ++ +L
Sbjct: 180 AYQLRDT-VTHKQGSYAALMADTIARFKQDKPVLYYTWTPYWVSAVLRPGADVVWLQVPF 238
Query: 217 ---------------EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKL 261
+ GF V +++K P RL + +K + N
Sbjct: 239 SSSQGGNADTQLPNGKNYGFQANQEQIVANRAFVEKNPAAGRLFEVMKLPIGDINAQNLR 298
Query: 262 ILNN---KQDRQFVGRTMLRTHPDLLKNWLI 289
+ +QD + +R H L W+
Sbjct: 299 MSQGANTQQDLERHTDGWIRAHRPLFDGWIE 329
>gi|317180581|dbj|BAJ58367.1| osmoprotection protein [Helicobacter pylori F32]
Length = 553
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 34/278 (12%), Positives = 81/278 (29%), Gaps = 31/278 (11%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL---AVPVTFRSLKNKGID 77
+A P+ A ++ + S++LE+ +L D
Sbjct: 283 NAIEEKPLVVAAKPSSEQYILGEILSLLLEKH-HIPIKRAFGIGGGTMNIHPALLRGDFD 341
Query: 78 IFMGYWYPSLEKFIAP--------------YLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+++ Y + + Y +E ++ V Y LA++
Sbjct: 342 LYVEYTGTAWVNTLKNPLTQKVDFETIKKRYEKEFNLLWVGLLGFNNTYSLAISKEDAQK 401
Query: 124 GIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ + + +G E E +I F + +
Sbjct: 402 Y--AIETFSDLAFHSPNFDFGAEFDFFEREDTFKGLIKAYPF------HFRSLHEMDINL 453
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ ++ + +L++ L + V+R + + K P
Sbjct: 454 RYKSFESHKINALDVFTTDAQIKELDLKVLKDDKGFF--PNYQAGIVMRKEIVKKYPEAL 511
Query: 243 RLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
++L+ + KFS + ++ + K+ Q V + L
Sbjct: 512 KILEKLDSKFSDEVMQDLNYQVEVLKKSPQIVAKEFLE 549
>gi|317154717|ref|YP_004122765.1| Substrate-binding region of ABC-type glycine betaine transporter
[Desulfovibrio aespoeensis Aspo-2]
gi|316944968|gb|ADU64019.1| Substrate-binding region of ABC-type glycine betaine transport
system [Desulfovibrio aespoeensis Aspo-2]
Length = 342
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 45/323 (13%), Positives = 85/323 (26%), Gaps = 45/323 (13%)
Query: 13 TFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRSL 71
+ + + A A W A+ LEE LGY K LA P+ + S+
Sbjct: 18 STAPASADKPGQGVTASPARATWNTGFFQEALVRRGLEE-LGYTVKKPKDLANPLAYTSI 76
Query: 72 KNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV-NDVGFALGIKSYQD 130
+D + W+P E + + + G V IKS D
Sbjct: 77 ALGDLDYWTNGWFPMHEAQLPGDFAAKAELVGYVAKAGGLQGYLVSKKHVEEFNIKSLDD 136
Query: 131 IA--------KYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ A + G + I ++ ++AS A +
Sbjct: 137 FKRPEVIKAFDSNGDGKADLTACPAGWGCEKVIDHHMDAYGLRD-FINPVKASYEAGMAN 195
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI------------------------ 218
++ P F +W P+ +
Sbjct: 196 AVGAYKSGKPVFFYTWTPNWTTFKFKPGVDVMWINVPGIKPSEAQKSAVDRMTVAGVEGA 255
Query: 219 ------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQD---R 269
GF + + V S +L+ P + ++ +A N + ++
Sbjct: 256 VSDPIELGFVVSDIRIVANSRFLNDNPAARKFFEDFTLPLADINAQNARMNEGEKSQKFI 315
Query: 270 QFVGRTMLRTHPDLLKNWLIGVT 292
+ + + WL
Sbjct: 316 ETHVDAWIAANKTTWDGWLKAAR 338
>gi|126727940|ref|ZP_01743765.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Rhodobacterales bacterium
HTCC2150]
gi|126702771|gb|EBA01879.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Rhodobacterales bacterium
HTCC2150]
Length = 314
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 39/314 (12%), Positives = 90/314 (28%), Gaps = 26/314 (8%)
Query: 1 MYKILAVCLF-LTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M K + + A ADS P+ W+ + + ILE +G
Sbjct: 1 MNKFTTALATGVLALAPLAAVAADSSDPIVIPIHNWSSQIVMSNVVGQILES-MGNNVEY 59
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ S++ + + + W + LE+G + V ++ +
Sbjct: 60 VTTDSQAVYESVRLGDVTMELEVWEGAFGASFRAALEKGGLHDVGDHNAVTREDWWYPMW 119
Query: 120 G--FALGIKSYQDIAKYKKELGAKIYGIEPGN---EGNQRILDMINNNKFSLKGFRLIEA 174
G+ S++ + + G + + + +
Sbjct: 120 TKEACPGLPSWEALNECAAVFATAETGDKGRYLDGPVDWLKHGQERVAALGMNFEVVNAG 179
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG------------------- 215
S A +++I + + P V +W P+ + ++
Sbjct: 180 SAAALWAEIGAAEADKRPVVVFNWTPNFAEAVWPGEFVEFPEWVDGCDKDPSVGPNPDAL 239
Query: 216 EEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRT 275
+ + + +K P L I F+ EM K + ++ + +
Sbjct: 240 YDCGNPAKGYLKKAAWDGMEEKWPAAYATLTKISFTNPQIAEMAKFVDIDEMEPEEAAAE 299
Query: 276 MLRTHPDLLKNWLI 289
L + + K+W
Sbjct: 300 WLEQNEAVWKSWTA 313
>gi|148546144|ref|YP_001266246.1| glycine betaine ABC transporter substrate-binding protein
[Pseudomonas putida F1]
gi|148510202|gb|ABQ77062.1| Substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas putida F1]
gi|313497239|gb|ADR58605.1| Substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas putida BIRD-1]
Length = 303
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 36/286 (12%), Positives = 81/286 (28%), Gaps = 31/286 (10%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL-AVPVTFRSLKNKGIDI 78
A VR +T+ +T+ L G+ + + ++ + +D+
Sbjct: 19 AQAAEKPLVRIGARVFTEQTVLAEITAQYLRAN-GFDVRVTTGLGSSIARQAQETGQLDL 77
Query: 79 FMGYWYPSLEKF----------------IAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
Y SL + + + + + + Y L +
Sbjct: 78 MWEYTGVSLVSYNHIDERMPSAEATYAKVKELDAKKDLIWLTPSKFSNTYALGLPKQVAE 137
Query: 123 LG-----IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
I + + +++ + ++ + + + +
Sbjct: 138 AYPQINSISDLNQVLRDERKRNHLVALDTEFANRPDGLVGLKEMYDLQVGRANIRQMDAG 197
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDK 237
+ NN L + S N+ L + F + + VVR LD
Sbjct: 198 ----LVYTAMHNNQVFAGLVYTTDGRLSAFNLKLLED--DKHYFPDYTAAPVVRKAVLDA 251
Query: 238 CPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTHP 281
P + LLK + + ++ + + Q+ V LR HP
Sbjct: 252 NPQLVALLKPLAEQLDDETMRQLNAKVDVDHQNPTAVAAAFLREHP 297
>gi|308063394|gb|ADO05281.1| osmoprotection protein (proWX) [Helicobacter pylori Sat464]
Length = 553
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 33/278 (11%), Positives = 81/278 (29%), Gaps = 31/278 (11%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL---AVPVTFRSLKNKGID 77
+A P+ A ++ + S++LE+ +L D
Sbjct: 283 NAIEEKPLVVATKPSSEQYILGEILSLLLEKH-HIPIKRAFGIGGGTMNIHPALIRGDFD 341
Query: 78 IFMGYWYPSLEKFIAP--------------YLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+++ Y + + Y +E ++ V Y LA++
Sbjct: 342 LYVEYTGTAWVNTLKNPLTQKVDFETIKKRYEKEFNLLWVGLLGFNNTYSLAISKEDAQK 401
Query: 124 GIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ + + +G E E ++ F + +
Sbjct: 402 Y--AIETFSDLAFHSPNFDFGAEFDFFEREDAFKGLVKAYPF------HFRSLHEMDINL 453
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ ++ + +L++ L + V+R + + K P
Sbjct: 454 RYKSFESHKINALDVFTTDAQIKELDLKVLKDDKGFF--PNYQAGIVMRKEIVKKYPEAL 511
Query: 243 RLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
++L+ + KFS + ++ + K+ Q V + L
Sbjct: 512 KILEKLDSKFSDEVMQDLNYQVEVLKKSPQIVAKEFLE 549
>gi|297380020|gb|ADI34907.1| osmoprotection protein (proWX) [Helicobacter pylori v225d]
Length = 553
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 33/278 (11%), Positives = 81/278 (29%), Gaps = 31/278 (11%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL---AVPVTFRSLKNKGID 77
+A P+ A ++ + S++LE+ +L D
Sbjct: 283 NATEEKPLVVATKPSSEQYILGEILSLLLEKH-HIPIKRSFGIGGGTMNIHPALIRGDFD 341
Query: 78 IFMGYWYPSLEKFIAP--------------YLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+++ Y + + Y +E ++ V Y LA++
Sbjct: 342 LYVEYTGTAWVNTLKNPLTQKVDFETIKKRYEKEFNLLWVGLLGFNNTYSLAISKEDAQK 401
Query: 124 GIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ + + +G E E ++ F + +
Sbjct: 402 Y--AIETFSDLAFHSPNFDFGAEFDFFEREDTFKGLVKAYPF------HFRSLHEMDINL 453
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ ++ + +L++ L + V+R + + K P
Sbjct: 454 RYKSFESHKINALDVFTTDAQIKELDLKALKDDKGFF--PNYQAGIVMRKEIVKKYPEAL 511
Query: 243 RLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
++L+ + KFS + ++ + K+ Q V + L
Sbjct: 512 KILEKLDSKFSDEVMQDLNYQVEVLKKSPQIVAKDFLE 549
>gi|296332657|ref|ZP_06875117.1| glycine betaine ABC transporter (glycine betaine-binding
lipoprotein) [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305673001|ref|YP_003864673.1| glycine betaine ABC transporter glycine betaine-binding lipoprotein
[Bacillus subtilis subsp. spizizenii str. W23]
gi|296149937|gb|EFG90826.1| glycine betaine ABC transporter (glycine betaine-binding
lipoprotein) [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305411245|gb|ADM36364.1| glycine betaine ABC transporter (glycine betaine-binding
lipoprotein) [Bacillus subtilis subsp. spizizenii str.
W23]
Length = 293
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 34/161 (21%), Positives = 67/161 (41%), Gaps = 4/161 (2%)
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
+++ I GI+PG+ + + + + LI AS A + +++ P +
Sbjct: 33 EQVNKTIIGIDPGSGIMTLTDKAMKDYDLND--WTLISASSAAMTATLKKSYDRKKPIII 90
Query: 196 LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
W PH + S + YL ++ G E ++T+ R + + PN ++LL K++
Sbjct: 91 TGWTPHWMFSRYKLKYLDDPKQSYGSAE-EIHTITRKGFSKEQPNAAKLLSQFKWTQDDM 149
Query: 256 NEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDG 296
E+M + + ++ H D + W GV G
Sbjct: 150 GEVMIKV-EEGEKPAKAAAEYVKKHKDQIAEWTKGVQKVKG 189
Score = 62.5 bits (150), Expect = 7e-08, Method: Composition-based stats.
Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 2/98 (2%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYW 83
+ A W A+T + +LE+ LGY + + ++ D + W
Sbjct: 188 KGDKINLAYVAWDSEIASTNVVGKVLED-LGYDVTFTQVEAGPMWTAIATGSADASLSAW 246
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
P+ K A +G V ++ G K L V
Sbjct: 247 LPNTHKAYAAKY-KGKYDDVGVSVTGVKMGLVVPQYMK 283
>gi|326803080|ref|YP_004320898.1| toxin-antitoxin system toxin component, PIN family [Aerococcus
urinae ACS-120-V-Col10a]
gi|326650510|gb|AEA00693.1| toxin-antitoxin system toxin component, PIN family [Aerococcus
urinae ACS-120-V-Col10a]
Length = 513
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 30/293 (10%), Positives = 79/293 (26%), Gaps = 22/293 (7%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILG-YKTNIKL- 61
+L + L + ++ A V A ++ M +++ ++ +K
Sbjct: 214 LLGLFLVIGGVNLYQNAQAPD-QKVVIAGKLGSEPDILINMYQELIQAEDDQFQVELKPN 272
Query: 62 -LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEG-------SIKLVAENLQGAKYM 113
F +L ++ +DI+ + L + +A+ +Y
Sbjct: 273 FGKTSFLFEALNHQEVDIYPEFSGTILGSLLENPPANHPGELSKGETYDLAKQGLEEEYQ 332
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKI------YGIEPGNEGNQRILDMINNNKFSLK 167
L + + + + +G K Y +D + +
Sbjct: 333 LTLLEPMAYENTYAILMRRDQAEAMGIKKISDLKPYANNLSAGFTLEFIDREDGYQGIQS 392
Query: 168 GFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV 226
++L + + + + + ++ L +
Sbjct: 393 LYQLHFGQVSSMEPALRYQAIAQGEVDLVDGYSTDSEIKAYDLVALEDDLGLF--PHYQG 450
Query: 227 YTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
++R DY P + L + + +M + Q + V L
Sbjct: 451 APMLRLDYAQDHPQVVAALNRLAGMITEEEMIQMNYQVSQEGQSAKEVAHQFL 503
>gi|299138693|ref|ZP_07031871.1| Substrate-binding region of ABC-type glycine betaine transport
system [Acidobacterium sp. MP5ACTX8]
gi|298599329|gb|EFI55489.1| Substrate-binding region of ABC-type glycine betaine transport
system [Acidobacterium sp. MP5ACTX8]
Length = 296
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 37/295 (12%), Positives = 82/295 (27%), Gaps = 26/295 (8%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+ +I+ L L + A + + +T+ + + +E G K +
Sbjct: 3 LTRIVRALLLLAFMTCLVACAPPRSSHIVIGAKNFTEQVVLGELLAQEIEAAGGGKVERR 62
Query: 61 L--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP--------------YLEEGSIKLVA 104
+ ++L + ID ++ Y +L + L E ++ A
Sbjct: 63 FWLAGSYLCQQALVSDRIDAYVEYTGTALTAILKQPLERNSAKVDATVARLYEQRYQVRA 122
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKK-ELGAKIYGIEPGNEGNQRILDMINNNK 163
G + A+ G + I+ K ++ E + +
Sbjct: 123 GPGLGFEDTFAMVVRGDDARRLGLKAISDVAKLAPQWRLGVGYEFAERPDGLAGLNAAYG 182
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+ + R + + L+ L + F
Sbjct: 183 L-----HFVGEPRTMELGLLYRSLAAHQVDIVAGNSTDGAIKALDFVALED--DRHYFPP 235
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
+VR D L + P I ++ + K + M + + +D V R
Sbjct: 236 YEAVPLVREDSLKRWPQIGVAMQRLAGKVNADEMRAMNLAVESQHRDAGDVVREF 290
>gi|83593812|ref|YP_427564.1| glycine betaine transporter periplasmic subunit [Rhodospirillum
rubrum ATCC 11170]
gi|83576726|gb|ABC23277.1| Substrate-binding region of ABC-type glycine betaine transport
system [Rhodospirillum rubrum ATCC 11170]
Length = 343
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 42/320 (13%), Positives = 83/320 (25%), Gaps = 36/320 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLL 62
+LAV L + A V + + T + S L LGY I +
Sbjct: 19 VLAVVCALGVLPANAAEQPGKGVSVLPIKSSIAEETFQTLLVSRAL-AELGYDVKDIGEI 77
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
+L N +W P + F + + +GA ++
Sbjct: 78 DYAAGHVALANGDATFLAAHWNPLHKDFYERAGGDAKLYRDGVYSEGALQGYLIDKKTAE 137
Query: 123 LGIKSYQD---------IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+ D + + + A + G PG I ++ +
Sbjct: 138 AHAITRIDQLKDPKIAALFDHDGDGKADLAGCTPGWGCEAVIEHHLDAYGLRKT-VTHQQ 196
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHP----INSDLNIHYLPGGEEISGFGEASVYTV 229
S A + + ++ +W P+ + ++ +L V T
Sbjct: 197 GSYSALMADTITRFKKGASVLYYTWTPYWVSGVLVPGRDVTWLQVPFSALPGSRKDVDTA 256
Query: 230 V----RSDYLDKCPNISR-------------LLKNIKFSVALENEMMKLILNNKQDRQFV 272
+ + I L ++ A N + N + + +
Sbjct: 257 LATGQNYGFQANTQQIVANRAWAEANPAAATLFSLMRLPNADINAQNLRMRNGENSQADI 316
Query: 273 GRT---MLRTHPDLLKNWLI 289
R + H WL
Sbjct: 317 ARHVDGWIAGHRQTWDGWLA 336
>gi|210632883|ref|ZP_03297582.1| hypothetical protein COLSTE_01489 [Collinsella stercoris DSM 13279]
gi|210159351|gb|EEA90322.1| hypothetical protein COLSTE_01489 [Collinsella stercoris DSM 13279]
Length = 302
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 35/292 (11%), Positives = 84/292 (28%), Gaps = 28/292 (9%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-L 62
A+ L T D + V +T+ + + ++ LE+ G + +
Sbjct: 16 TAALSLAGTGALAGCGADGNDEGAVTVGSKAFTEGVILSELYALALEDA-GIQVKRSFEI 74
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP----------------YLEEGSIKLVAEN 106
+ + +L + ID++ Y L + Y E + + ++
Sbjct: 75 SGSLIHTALTSGDIDLYPEYTGTGLISVLQMAPITDPQKAYDTVKEAYAREFDLTWLDQS 134
Query: 107 LQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSL 166
L + + + +E + +
Sbjct: 135 PAADGQGLVIRTDVAEKYGIETISDLQQH-APELRFASQGQFDERPDGLPALEATYGPFD 193
Query: 167 KGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV 226
R I RN+ V ++ + + + ++ + +V
Sbjct: 194 WKERAIFDE-----GLKYEVLRNDEMDVTPAYTTEAQLT--DDAFTLLEDDKRVWPPYNV 246
Query: 227 YTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTM 276
VVRS+ L+ P I+ L + + + + +K++ + V R
Sbjct: 247 APVVRSEVLEANPAIAEALNRVSAALTTEDLTRLNARVDIDKEEYEDVARDF 298
>gi|16119443|ref|NP_396149.1| glycine betaine transporter periplasmic subunit [Agrobacterium
tumefaciens str. C58]
gi|15161979|gb|AAK90590.1| ABC transporter, nucleotide binding/ATPase protein (glycine
betaine/L-proline) [Agrobacterium tumefaciens str. C58]
Length = 345
Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats.
Identities = 44/336 (13%), Positives = 97/336 (28%), Gaps = 48/336 (14%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILE---EILGYKTNIK 60
+ S S A +RFA +D + + I+ E LGYK +
Sbjct: 14 TIVAASLPVLSSASAAELPGDGKTIRFAQ---SDSLGANYVVAKIVTKGFEALGYKVKLS 70
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ + F+++ +DI +P E ++ + G ++
Sbjct: 71 TVNTTLFFQAVAQGDLDIATDINFPQREPGFRKVADKADMIGKGLIEGGGINGYLIDKKT 130
Query: 121 FALG-------IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+K + A + + A + +PG + ++ +
Sbjct: 131 ADAYNIKTLDQMKDPKIAALFGTDGKADLINCDPGWSCGDVVEYQLDKFGLKDTVKSVRG 190
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEEI----------- 218
E + R + P F +W P +N ++ +LP +
Sbjct: 191 KYEALMVEAVARA-KRGEPVFFYAWSPSWMNKALQPGKDVVWLPTPFDALPPSVPSSGTN 249
Query: 219 ----------------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI 262
+ V ++L + P + ++N+ F ++ + + I
Sbjct: 250 AVANVEGCAGAANPCRMAMAAWNWTAVGNKEFLKENPEVKSFVENMSFPLSTWSSWEQAI 309
Query: 263 LNNKQDRQFV---GRTMLRTHPDLLKNWLIGVTTFD 295
V L + LL W+ + +
Sbjct: 310 SQKGGSDATVRGLSDAWLSENKALLDGWITAAKSAN 345
>gi|254228317|ref|ZP_04921744.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein, putative [Vibrio sp. Ex25]
gi|151939123|gb|EDN57954.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein, putative [Vibrio sp. Ex25]
Length = 335
Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats.
Identities = 40/325 (12%), Positives = 93/325 (28%), Gaps = 39/325 (12%)
Query: 2 YKILAVCLFLTTFSIS---YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
K L+V T + + V+ + + T + + LEE LGY
Sbjct: 6 KKALSVGALSTIAFSTYGVASELPGEGVTVQPVQSTVAEETFQTLIVNRALEE-LGYDVK 64
Query: 59 -IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
K + V + S+ W+P + + + GA ++
Sbjct: 65 PTKEVDYNVGYTSIAKGDATFLAVGWFPLHADKYTMSGGDDKFFRKGQYVSGAAQGYLID 124
Query: 118 DVGFALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
+ + + A + G PG + ++ K
Sbjct: 125 KKTAEKYGITNIGQLKDPKLAKLFDANGDGKADLTGCNPGWGCEMVVEHQLDAFKLRDT- 183
Query: 169 FRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINS---------------------DL 207
+ + A + + P ++ +W P+ ++
Sbjct: 184 VTHNQGNYAAIIADTISRYKKGDPILYYTWTPYWVSGVLVPGKDVVWLEVPFSSLPGERK 243
Query: 208 NIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQ 267
+I + GF S+ V ++ +K P ++L + IK ++ + ++ K
Sbjct: 244 DIDTTLENGKNYGFEMNSMRIVANKEFTEKNPAAAKLFEIIKLNINDVSAQNMMMSQGKN 303
Query: 268 DRQFV---GRTMLRTHPDLLKNWLI 289
+ ++ + W+
Sbjct: 304 SSADIESHVNGWIKANQKKFDAWVD 328
>gi|153000551|ref|YP_001366232.1| glycine betaine transporter periplasmic subunit [Shewanella baltica
OS185]
gi|151365169|gb|ABS08169.1| Substrate-binding region of ABC-type glycine betaine transport
system [Shewanella baltica OS185]
Length = 334
Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats.
Identities = 43/334 (12%), Positives = 91/334 (27%), Gaps = 50/334 (14%)
Query: 1 MYKILAVCLFLTTFSISYARDAD-----SCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
+ ++ A AD V+ A W A+ LE LGY
Sbjct: 3 LKNVILGAALAAMTVTGSAALADTLKPGEGITVKPARATWDTGFFQEALVRRGLET-LGY 61
Query: 56 KTN-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
K L P+ ++++ ID + W+P + +E + K+ G
Sbjct: 62 DVEKPKTLVNPIFYKTVTLGDIDYWANGWFPMHNDQLPSNFDEKAEKIGYVIKAGGLGGY 121
Query: 115 AVNDVGFALGIKSYQDIAKYKK---------ELGAKIYGIEPGNEGNQRILDMINNNKFS 165
++ + K + + A + PG + I ++
Sbjct: 122 LISKKEADKYNITSLADFKRPEVKQAFDTNGDGKADLTACPPGWGCEKIITHHMDVYGLK 181
Query: 166 LKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE-------- 217
++A+ A + +N P F +W P+ +
Sbjct: 182 DS-INPVKAAYAAGMASAMAGYKNGGPIFFYTWSPNWTIFKMKPGKDVVWINVPEIKPTK 240
Query: 218 ----------------------ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
GF + + V + + P + + +A
Sbjct: 241 AQSAAVDRMTVKALEGAVSDPIKLGFVASDIQIVANKKFAKQNPAARKFFEVFTLPLADI 300
Query: 256 NEMMKLILNNKQDRQFV---GRTMLRTHPDLLKN 286
NE + + ++ +Q + + + D
Sbjct: 301 NEQNTRMNDGEKSKQDIQHHVDGWIAKNQDKWNG 334
>gi|312865206|ref|ZP_07725434.1| glycine betaine/carnitine/choline-binding protein [Streptococcus
downei F0415]
gi|311099317|gb|EFQ57533.1| glycine betaine/carnitine/choline-binding protein [Streptococcus
downei F0415]
Length = 322
Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats.
Identities = 33/277 (11%), Positives = 75/277 (27%), Gaps = 25/277 (9%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGIDIF- 79
++ T+ + M S ++ LGY+T + + V ++L DI
Sbjct: 44 SQGVDIKITSMTSTESSIMANMISELINHELGYQTTLITNLGSANVQHQALLRGDADIAS 103
Query: 80 --------------MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
P + G A
Sbjct: 104 IRYTGTDLTGTLSLPAEKDPQKASRTVKKEFQKRFDQTWFPTYGFSDTYAFMVTSDYAKK 163
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
+ Q ++ KK + G++ + + + +
Sbjct: 164 YNLQTVSDLKKVQSSAKVGVDSTWMNREGDGYRDFAKAYGFNFKSIYP----MQIGLVYD 219
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
++ L + S ++ L + F VV ++ L K P + ++L
Sbjct: 220 AVESDKMQTVLGYSTDGRISSYDLTILED--DKRFFPPYEASMVVNNNLLRKYPKLKKVL 277
Query: 246 KNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ K ++ + ++ + + + V LR H
Sbjct: 278 HRLDGKINLKMMQQLNYQVDDKLLEPSVVAHNFLREH 314
>gi|331001952|ref|ZP_08325472.1| hypothetical protein HMPREF0491_00334 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330411748|gb|EGG91153.1| hypothetical protein HMPREF0491_00334 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 512
Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats.
Identities = 33/293 (11%), Positives = 77/293 (26%), Gaps = 29/293 (9%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--- 61
+ + + I + + A T+ M + +E +I
Sbjct: 222 VISLVLIFCILIVGLLPKKNKNIIHLATKPMTEQYILGEMLKLYIENNTDLSVDITQGVG 281
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFI---------------APYLEEGSIKLVAEN 106
++++ D++ Y + Y E+ +
Sbjct: 282 GGTSNIEPAMESGEFDLYPEYTGTGWNMVLKHEDQYGEEQFDILQKEYQEKLGLTWDVML 341
Query: 107 LQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSL 166
Y +A+ + + +K G I G E Q DM+
Sbjct: 342 GFNNTYGIALRRDIALKN--DIKTYSDLQKLNGKLILGAEYDFFERQDGYDMLRK----- 394
Query: 167 KGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV 226
++ + + V S ++ L + +
Sbjct: 395 TYNLSFASTSDMDMGLKYQAINSGKIDVMPVNTTDGQLSQADVVLLEDDKG--MYPSYQA 452
Query: 227 YTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
VVR + +K P + L+ + + M + + K++ + V + L
Sbjct: 453 GMVVREEIFNKYPQLHSALQKFDKLINESDIQRMNYEVESEKKEPRDVAKAFL 505
>gi|258509612|ref|YP_003172363.1| ABC transporter permease [Lactobacillus rhamnosus GG]
gi|257149539|emb|CAR88512.1| ABC transporter, permease protein [Lactobacillus rhamnosus GG]
gi|259650878|dbj|BAI43040.1| glycine/betaine ABC transporter permease and substrate binding
components [Lactobacillus rhamnosus GG]
Length = 510
Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats.
Identities = 28/294 (9%), Positives = 76/294 (25%), Gaps = 19/294 (6%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEI---LGYKTNIK 60
++A+ +F + Y+R + A ++ M ++++ +G
Sbjct: 212 VVALAVFGLVGTQVYSRVTAPKETITIAGKLGSEPDILIHMYKELIQKADPDVGVTLKPN 271
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQG------AKYML 114
+ +L+ I+++ + L P + +N A+
Sbjct: 272 FGQTSFLYNALRTDKINLYPEFSGTVLASLTKPSATQQQQVAAGKNNYPLAKKLLARQGF 331
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEP------GNEGNQRILDMINNNKFSLKG 168
+ A + K + + +D + K
Sbjct: 332 TYLKPMAYNNTYALVVKASFAKRYQLQTISDLAKIAPSIRAGFDLEFIDRQDGYKGIQSQ 391
Query: 169 FRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYT 228
+ L + S + + + ++ L + +
Sbjct: 392 YGLQFKVDSMDASLRYQALDRGQINLTDGYTTDAQLRQYHLVALKDDKGLF--PIYRGAP 449
Query: 229 VVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
++R+ + + P + L + + M + Q V L H
Sbjct: 450 LMRAAFAKQHPRLVAALNRLANHITEKQMQAMNYAVSVQNQKAATVAHRYLVQH 503
>gi|170723469|ref|YP_001751157.1| glycine betaine ABC transporter substrate-binding protein
[Pseudomonas putida W619]
gi|169761472|gb|ACA74788.1| Substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas putida W619]
Length = 303
Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats.
Identities = 38/285 (13%), Positives = 78/285 (27%), Gaps = 31/285 (10%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL-AVPVTFRSLKNKGIDIF 79
A VR +T+ +T+ L G+ + + ++ + +D+
Sbjct: 20 QAAEKPLVRIGARVFTEQTVLAEITAQYLRAN-GFDVRVTSGLGSSLARQAQETGQLDLM 78
Query: 80 MGYWY-------------PSLEKFIAP---YLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
Y PS E A + + + Y L +
Sbjct: 79 WEYTGVSLVSYNHIEERMPSAEATYAKVKALDAKKDLIWLTPTKFSNTYALGLPKQVAEA 138
Query: 124 G-----IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
I + + +++ + ++ + + + +
Sbjct: 139 YPQINTISDLNQVLRDERQRNHLVALDTEFANRPDGLVGLKEMYDLQVGRANIRQMDAG- 197
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+ NN L + S N+ L + F + + VVR LD
Sbjct: 198 ---LVYTAMHNNQVFAGLVYTTDGRLSAFNLKLLED--DKHYFPDYTAAPVVRKAVLDAN 252
Query: 239 PNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTHP 281
P + LLK + + ++ + Q V LR HP
Sbjct: 253 PQLVALLKPLAEQLDDETMRQLNAKVDVEHQSPTAVAAAFLREHP 297
>gi|317182130|dbj|BAJ59914.1| osmoprotection protein [Helicobacter pylori F57]
Length = 518
Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats.
Identities = 33/278 (11%), Positives = 82/278 (29%), Gaps = 31/278 (11%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL---AVPVTFRSLKNKGID 77
+A P+ A ++ + S++LE+ +L D
Sbjct: 248 NAIEEKPLVVATKPSSEQYILGEILSLLLEKH-HIPIKRAFGIGGGTMNIHPALLRGDFD 306
Query: 78 IFMGYWYPSLEKFIAP--------------YLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+++ Y + + Y +E ++ V Y LA++
Sbjct: 307 LYVEYTGTAWVNTLKNPLTQKVDFETIKKRYEKEFNLLWVGLLGFNNTYSLAISKEDAQK 366
Query: 124 GIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ + + +G E E ++ +F + +
Sbjct: 367 Y--AIETFSDLAFHSPNFDFGAEFDFFEREDAFKGLVKAYRF------HFRSLHEMDINL 418
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ ++ + +L++ L + V+R + + K P
Sbjct: 419 RYKSFESHKINALDVFTTDAQIKELDLKVLKDDKGFF--PNYQAGIVMRKEIVKKYPEAL 476
Query: 243 RLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
++L+ + KFS + ++ + K+ Q V + L
Sbjct: 477 KILEKLDSKFSDEVMQDLNYQVEVLKKSPQIVAKEFLE 514
>gi|315586517|gb|ADU40898.1| glycine betaine ABC superfamily ATP binding cassette transporter,
membrane protein [Helicobacter pylori 35A]
Length = 518
Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats.
Identities = 33/278 (11%), Positives = 82/278 (29%), Gaps = 31/278 (11%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL---AVPVTFRSLKNKGID 77
+A P+ A ++ + S++LE+ +L D
Sbjct: 248 NAIEEKPLVVATKPSSEQYILGEILSLLLEKH-HIPIKRAFGIGGGTMNIHPALLRGDFD 306
Query: 78 IFMGYWYPSLEKFIAP--------------YLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+++ Y + + Y +E ++ V Y LA++
Sbjct: 307 LYVEYTGTAWVNTLKNPLTQKVDFETIKKRYEKEFNLLWVGLLGFNNTYSLAISKEDAQK 366
Query: 124 GIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ + + +G E E ++ +F + +
Sbjct: 367 Y--AIETFSDLAFHSPNFDFGAEFDFFEREDAFKGLVKAYRF------HFRSLHEMDINL 418
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ ++ + +L++ L + V+R + + K P
Sbjct: 419 RYKSFESHKINALDVFTTDAQIKELDLKVLKDDKGFF--PNYQAGIVMRKEIVKKYPEAL 476
Query: 243 RLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
++L+ + KFS + ++ + K+ Q V + L
Sbjct: 477 KILEKLDSKFSDEVMQDLNYQVEVLKKSPQIVAKEFLE 514
>gi|254455443|ref|ZP_05068872.1| glycine betaine-binding lipoprotein, putative [Candidatus
Pelagibacter sp. HTCC7211]
gi|207082445|gb|EDZ59871.1| glycine betaine-binding lipoprotein, putative [Candidatus
Pelagibacter sp. HTCC7211]
Length = 334
Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats.
Identities = 51/333 (15%), Positives = 96/333 (28%), Gaps = 46/333 (13%)
Query: 1 MY--KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K + + + A++ + A WT T + +LEE LGYK
Sbjct: 1 MKLTKTFSAFVLSFVLLLGTFSQANAKR-LTAAVADWTGGEITCQVAVSMLEEELGYKVK 59
Query: 59 IKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKF--------------IAPYLEEGSIKLV 103
+ + ++ ID W E + Y +GS+KL+
Sbjct: 60 RVVFPSGTGLWEAIAAGEIDFACESWPSYAEADTVMMKGPLVYDGKTMFNYEGDGSVKLL 119
Query: 104 AENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPG----NEGNQRILDM 158
+ + IKS++D+ K+K + G D
Sbjct: 120 GTSGIIGLSDYFIPKYAADKYGIKSWKDLNKHKDKFATIESGNRGRLIACPVAGWNCHDQ 179
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIH-------- 210
+ + +E A+ ++ P + WEPH ++
Sbjct: 180 KRLDLLGIDFQADELGTEAAALAEASAAYERKEPFLLYLWEPHWFFGAYDMVGVGLPEHK 239
Query: 211 ----YLPGGEEISGFGEASVYTVVRSDY-----------LDKCPNISRLLKNIKFSVALE 255
+ A T DY + + +KF A +
Sbjct: 240 TCDSFTEANNWKDCGTAAWPATGWAKDYTFNYGNPATFAKPENAKAAEFFTKMKFDNADQ 299
Query: 256 NEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
M+ + +D + V + +PD +W+
Sbjct: 300 AVMLVEVKQKNRDLKEVVKEWKDANPDKWSSWI 332
>gi|308062138|gb|ADO04026.1| osmoprotection protein (proWX) [Helicobacter pylori Cuz20]
Length = 553
Score = 123 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 33/278 (11%), Positives = 81/278 (29%), Gaps = 31/278 (11%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL---AVPVTFRSLKNKGID 77
+A P+ A ++ + S++LE+ +L D
Sbjct: 283 NAIEEKPLVVAAKPSSEQYILGEILSLLLEKH-HIPIKRAFGIGGGTMNIHPALIRGDFD 341
Query: 78 IFMGYWYPSLEKFIAP--------------YLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+++ Y + + Y +E ++ V Y LA++
Sbjct: 342 LYVEYTGTAWVNTLKNPLTQKVDFETIKKRYEKEFNLLWVGLLGFNNTYSLAISKEDAQK 401
Query: 124 GIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ + + +G E E ++ F + +
Sbjct: 402 Y--AIETFSDLAFHSPNFDFGAEFDFFEREDAFKGLVKAYPF------HFRSLHEMDINL 453
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ ++ + +L++ L + V+R + + K P
Sbjct: 454 RYKSFESHKINALDVFTTDAQIKELDLKVLKDDKGFF--PNYQAGIVMRKEIVKKYPEAL 511
Query: 243 RLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
++L+ + KFS + ++ + K+ Q V + L
Sbjct: 512 KILEKLDSKFSDEVMQDLNYQVEVLKKSPQIVAKEFLE 549
>gi|166365577|ref|YP_001657850.1| glycine/betaine transport system permease protein [Microcystis
aeruginosa NIES-843]
gi|166087950|dbj|BAG02658.1| glycine/betaine transport system permease protein [Microcystis
aeruginosa NIES-843]
Length = 509
Score = 123 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 27/276 (9%), Positives = 74/276 (26%), Gaps = 30/276 (10%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGIDIFM 80
S V +T+ + + +E+ + + + ++K ID ++
Sbjct: 239 SSPGTVVIGSKNFTEQVILGEILAQEIEKETNLRVERQFNLGGTLICHEAVKAGKIDGYV 298
Query: 81 GYWYPSLEKFIAP----------------YLEEGSIKLVAENLQGAKYMLAVNDVGF-AL 123
Y + + Y E+ ++++ + + +
Sbjct: 299 EYSGTAFTGILQEKPLNDARLVFEKLQEIYPEKFNLEVFPSLGFENTFAIVIRGETASQY 358
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
+K+ +AKY A E + ++ +
Sbjct: 359 NLKTLSQVAKYTPNWQAGF--GYEFLEREDGYKGLAKTYGL-----NFAGPPKVMDLGLM 411
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
R + + L++ L + + D L K P + +
Sbjct: 412 YRALAEKQVDLVAGNSTDGLIPVLDLVILEDDQRYF--PPYEAVPIFNRDSLRKYPQLRQ 469
Query: 244 LLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+L + K + ++ + + + V + L
Sbjct: 470 VLAKLTGKITSTAMQKLNYQVDGRDRKVEEVVKEFL 505
>gi|256847670|ref|ZP_05553115.1| ABC transporter permease component [Lactobacillus coleohominis
101-4-CHN]
gi|256715359|gb|EEU30335.1| ABC transporter permease component [Lactobacillus coleohominis
101-4-CHN]
Length = 510
Score = 123 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 35/295 (11%), Positives = 87/295 (29%), Gaps = 20/295 (6%)
Query: 4 ILAVCLFLTTFSISYARDA--DSCTPVRFADTGWTDIAATTAMTSVILEE---ILGYKTN 58
+LA+ + L FS A + T + A ++ M ++++
Sbjct: 213 MLAIVILLVGFSGYQGYQALRPAPTEIVIAGKMGSEPDILIHMYKDLIQQEDPRAEVTLK 272
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL-----EEGSIKLVAENLQGAKYM 113
F++L++ ID++ + ++ I + + +L L M
Sbjct: 273 PNFGGTTFLFKALQSNQIDVYPEFTGTVNQQIIKSKQKTGTNPQKTYQLAKRELARRYQM 332
Query: 114 LAVNDVGFALGI-----KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
+ + + G + + K Y E + + + + +
Sbjct: 333 RYLKPMQYQNGYALVASPQFAQTHQLTKMSQLANYNNEITAGFDPDFYQLHDGYQGLKQP 392
Query: 169 FRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
+ + I + N V + P ++ L + F
Sbjct: 393 YGYHFKNVKTMEPAIRYQAIANGRVNVVDGYTTDPQIPQYHLKMLRD--DRHFFPPYQGA 450
Query: 228 TVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+++ + + P + L + K + +M + K+ V R L +
Sbjct: 451 PLMKESFAKRNPRVVTALNKLAGKITTKEMQQMNYEVTVKKKSAATVARQYLIKN 505
>gi|217034135|ref|ZP_03439555.1| hypothetical protein HP9810_868g28 [Helicobacter pylori 98-10]
gi|216943419|gb|EEC22875.1| hypothetical protein HP9810_868g28 [Helicobacter pylori 98-10]
Length = 512
Score = 123 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 32/275 (11%), Positives = 80/275 (29%), Gaps = 31/275 (11%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL---AVPVTFRSLKNKGIDIFM 80
P+ A ++ + S++LE+ +L D+++
Sbjct: 245 EEKPLVVATKPSSEQYILGEILSLLLEKH-HIPIKRAFGIGGGTMNIHPALIRGDFDLYV 303
Query: 81 GYWYPSLEKFIAP--------------YLEEGSIKLVAENLQGAKYMLAVNDVGFALGIK 126
Y + + Y +E ++ V Y LA++
Sbjct: 304 EYTGTAWVNTLKNPLTQKVDFETIKKRYEKEFNLLWVGLLGFNNTYSLAISKEDAQKY-- 361
Query: 127 SYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
+ + + +G E E ++ +F + + +
Sbjct: 362 AIETFSDLAFHSPNFDFGAEFDFFEREDAFKGLVKAYRF------HFRSLHEMDINLRYK 415
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
++ + +L++ L + V+R + + K P ++L
Sbjct: 416 SFESHKINALDVFTTDAQIKELDLKVLKDDKGFF--PNYQAGIVMRKEIVKKYPEALKIL 473
Query: 246 KNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
+ + KFS + ++ + K+ Q V + L
Sbjct: 474 EKLDSKFSDEVMQDLNYQVEVLKKSPQRVAKEFLE 508
>gi|311070952|ref|YP_003975875.1| glycine betaine ABC transporter glycine betaine-binding lipoprotein
[Bacillus atrophaeus 1942]
gi|310871469|gb|ADP34944.1| glycine betaine ABC transporter glycine betaine-binding lipoprotein
[Bacillus atrophaeus 1942]
Length = 293
Score = 123 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 33/161 (20%), Positives = 65/161 (40%), Gaps = 4/161 (2%)
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
++ I GI+PG+ + + + + L+ AS A + +++ P +
Sbjct: 33 DQVNKTIIGIDPGSGIMGLTDQAMKDYDLND--WTLVSASSAAMTATLKKSYDRKKPIIV 90
Query: 196 LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
W PH + S + YL ++ G E ++T+ R+ + + PN +LL K++
Sbjct: 91 TGWTPHWMFSRYKLKYLDDPKKSYGEAE-QIHTITRTGFSKEQPNAVKLLSQFKWTEDDM 149
Query: 256 NEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDG 296
E+M + ++ H D + W GV G
Sbjct: 150 GEVMIAV-EEGTKPAKAAEDYVKKHKDQIAEWTKGVDKVKG 189
Score = 63.3 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 2/98 (2%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYW 83
+ A W A+T + +L++ LGY + + + ++ D + W
Sbjct: 188 KGDKINLAYVAWDSEIASTNVVGKVLKD-LGYDVELTQVEAGPMWTAIATGSADASLSAW 246
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
P+ K A +G V ++ G K L V
Sbjct: 247 LPNTHKAYAAKY-KGKYDDVGVSITGVKMGLVVPQYMK 283
>gi|269966458|ref|ZP_06180542.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
gi|269828915|gb|EEZ83165.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
Length = 335
Score = 123 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 39/325 (12%), Positives = 92/325 (28%), Gaps = 39/325 (12%)
Query: 2 YKILAVCLFLTTFSIS---YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
K L+V T + + V+ + + T + + LEE LGY
Sbjct: 6 KKALSVGALSTIAFSTYGVASELPGEGVTVQPVQSTVAEETFQTLIVNRALEE-LGYDVK 64
Query: 59 -IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
K + V + S+ W+P + + + GA ++
Sbjct: 65 PTKEVDYNVGYTSIAKGDATFLAVGWFPLHADKYTMSGGDDKFFRKGQYVSGAAQGYLID 124
Query: 118 DVGFALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
+ + + A + G PG + ++ K
Sbjct: 125 KKTAEKYNITNIGQLKDPKLAKLFDANGDGKADLTGCNPGWGCEMVVEHQLDAFKLRDT- 183
Query: 169 FRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINS---------------------DL 207
+ + A + + P ++ +W P+ ++
Sbjct: 184 VTHNQGNYAAIIADTISRYKKGDPILYYTWTPYWVSGVLVPGKDVVWLEVPFSSLPGERK 243
Query: 208 NIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQ 267
+I + GF S+ V ++ + P ++L + IK ++ + ++ K
Sbjct: 244 DIDTTLENGKNYGFEMNSMRIVANKEFTENNPAAAKLFEIIKLNINDVSAQNMMMSQGKN 303
Query: 268 DRQFV---GRTMLRTHPDLLKNWLI 289
+ ++ + W+
Sbjct: 304 SSADIESHVNGWIKANQKKFDAWVE 328
>gi|317470850|ref|ZP_07930231.1| hypothetical protein HMPREF1011_00578 [Anaerostipes sp. 3_2_56FAA]
gi|316901677|gb|EFV23610.1| hypothetical protein HMPREF1011_00578 [Anaerostipes sp. 3_2_56FAA]
Length = 252
Score = 123 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 34/256 (13%), Positives = 75/256 (29%), Gaps = 31/256 (12%)
Query: 44 MTSVILEEILGYKTNIKLL---AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP------- 93
M S+++E+ G T + +++ DI+ Y +
Sbjct: 1 MLSILIEQETGLNTELTQGVGGGTSNIQPAMEKGEFDIYPEYTGTGWNMVLKKSGIYTED 60
Query: 94 --------YLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGI 145
Y E+ ++ + Y LAV + + + K+ G +G
Sbjct: 61 MFGQLKAGYEEKCGMQWLGMYGFNNTYGLAVRRETAEKY--NLRTYSDLKRAAGQLTFGA 118
Query: 146 E-PGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPIN 204
E E + F + + + V +
Sbjct: 119 EYDFFEREDGYDALCKTYGFKF------KNTMDMDIGLKYKAIGQKKIDVMNIFTTDGQL 172
Query: 205 SDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLI 262
S ++ L + + S VVR D L++ P + + + + S L ++ +
Sbjct: 173 SVSDVVVLKDNKNF--YPSYSCGNVVRDDVLNEHPELKAVFQKLNGILSDELMAKINYEV 230
Query: 263 LNNKQDRQFVGRTMLR 278
K++ + L+
Sbjct: 231 ETKKKEPKEAAEDFLK 246
>gi|308182977|ref|YP_003927104.1| osmoprotection protein (proWX) [Helicobacter pylori PeCan4]
gi|308065162|gb|ADO07054.1| osmoprotection protein (proWX) [Helicobacter pylori PeCan4]
Length = 553
Score = 123 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 32/275 (11%), Positives = 79/275 (28%), Gaps = 31/275 (11%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL---AVPVTFRSLKNKGIDIFM 80
P+ A ++ + S++LE+ +L D+++
Sbjct: 286 EEKPLVVATKPSSEQYILGEILSLLLEKH-HIPIKRAFGIGGGTMNIHPALIRGDFDLYV 344
Query: 81 GYWYPSLEKFIAP--------------YLEEGSIKLVAENLQGAKYMLAVNDVGFALGIK 126
Y + + Y +E ++ V Y LA++
Sbjct: 345 EYTGTAWVNTLKNPLTQKVDFETIKKRYEKEFNLLWVGLLGFNNTYSLAISKEDAQKY-- 402
Query: 127 SYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
+ + + +G E E ++ F + + +
Sbjct: 403 AIETFSDLAFHSPNFDFGAEFDFFEREDAFKGLVKAYPF------HFRSLHEMDINLRYK 456
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
++ + +L++ L + V+R + + K P ++L
Sbjct: 457 SFESHKINALDVFTTDAQIKELDLKVLKDDKGFF--PNYQAGIVMRKEIVKKYPEALKIL 514
Query: 246 KNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
+ + KFS + ++ + K+ Q V + L
Sbjct: 515 EKLDSKFSDEVMQDLNYQVEVLKKSPQIVAKEFLE 549
>gi|119387610|ref|YP_918644.1| substrate-binding region of ABC-type glycine betaine transport
system [Paracoccus denitrificans PD1222]
gi|119378185|gb|ABL72948.1| Substrate-binding region of ABC-type glycine betaine transport
system [Paracoccus denitrificans PD1222]
Length = 294
Score = 123 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 37/274 (13%), Positives = 85/274 (31%), Gaps = 27/274 (9%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL-AVPVTFRSLKNKGIDIFMGYWYP 85
+ +T+ +A+T +LE G++ + + ++++N ID++ Y
Sbjct: 25 DIVVGGKNFTEQQILSAITQQVLEAN-GHRVDNRAGMGSAAVRQAMENGQIDVYWEYTGT 83
Query: 86 SLEKF---------------IAPYLEEGSIKLVAENLQGAKYMLAVN-DVGFALGIKSYQ 129
SL + + + I + + Y LA+ GI S
Sbjct: 84 SLITYNNIEEKLDPQQTYDTVKELDAQKGIVWLNPSEANNTYALAMRAADASEKGIASIS 143
Query: 130 DIAKYKKELGAKIYGIEPGNEGN-QRILDMINNNKFSLKGFRLIEASELASFSQIRRDQR 188
D+A + +G + + F + + + R
Sbjct: 144 DLAGAINGGQSLTFGSNAEFYARPDGLKPLETAYGFEFGRANVKRMD----TGLVYQALR 199
Query: 189 NNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI 248
+ V L + + L + ++ V+R+ L+ P+I LL +
Sbjct: 200 DGQVDVGLVFATDGRIPAFDFTVLEDDQGYF--PSYALAPVIRTQVLEANPDIGDLLNEV 257
Query: 249 --KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
K + + + +K + L+ +
Sbjct: 258 SAKLDDQVMAALNASVDVDKVSVENAAAKFLQDN 291
>gi|325275908|ref|ZP_08141755.1| glycine betaine ABC transporter substrate-binding protein
[Pseudomonas sp. TJI-51]
gi|324098958|gb|EGB96957.1| glycine betaine ABC transporter substrate-binding protein
[Pseudomonas sp. TJI-51]
Length = 304
Score = 123 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 45/305 (14%), Positives = 91/305 (29%), Gaps = 32/305 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K +A+ L +A+ A++ +R +T+ +T+ L G+ +
Sbjct: 1 MKKTIALLLGAALLFAGFAQAAETPQ-IRIGARVFTEQTVLAEITAQYLRAN-GFDVRVT 58
Query: 61 LLAVPVT-FRSLKNKGIDIFMGYWY-------------PSLEKFIAP---YLEEGSIKLV 103
++ + +D+ Y PS E A + + +
Sbjct: 59 TGLGSNIARQAQETGQLDLMWEYTGVSLVSYNHIEERMPSAEATYAKVKALDAKKGLVWL 118
Query: 104 AENLQGAKYMLAVNDVGFALG-----IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ Y L + I + + + E + ++ +
Sbjct: 119 TPSKFSNTYALGLPKQVAEAYPQVNSISDLNQVLRDESERKHLVALDTEFANRPDGLVGL 178
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
L + + + RNN L + S N+ L +
Sbjct: 179 KAMYDLQLGRANIRQMDAG----LVYTAMRNNQVFAGLVYTTDGRLSAFNLKLLED--DK 232
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F + + VVR LD P ++ LLK + + ++ + Q+ V
Sbjct: 233 RYFPDYTAAPVVRKAVLDANPQLAGLLKPLAEQLDDETMRQLNAKVDVEHQNPTAVAAAF 292
Query: 277 LRTHP 281
LR HP
Sbjct: 293 LRDHP 297
>gi|298368917|ref|ZP_06980235.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Neisseria sp. oral
taxon 014 str. F0314]
gi|298282920|gb|EFI24407.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Neisseria sp. oral
taxon 014 str. F0314]
Length = 515
Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats.
Identities = 37/315 (11%), Positives = 79/315 (25%), Gaps = 46/315 (14%)
Query: 2 YKILAVCLFLTTFSISY----------ARDADSCTPVRFADTGWTDIAATTAMTSVILEE 51
K+ + L AR S + + A ++ M ++EE
Sbjct: 203 RKLSITAVLLIVLGTISFSHVFQNTEPARGTASQSKITIAGKLGSEPDILINMYKQLIEE 262
Query: 52 ILG---YKTNIKLLAVPVTFRSLKNKGIDIFMGYWYP---------------------SL 87
F +L + IDI+ + +
Sbjct: 263 NNPRAQVMLKPNFGKTSFLFNALNSGEIDIYPEFTGTVLESLVKVPAEQQNRRLSPEQTY 322
Query: 88 EKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEP 147
+ + + + Y LAV+ A K +
Sbjct: 323 QTAKDLLARQHRLTFLPPMAYQNTYALAVSQDYAAAHNLHKISDLKRVQNQIR------- 375
Query: 148 GNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDL 207
D + K + + N + ++
Sbjct: 376 -AGFTLEFTDRPDGYKGLQQHGIQFSHLSTLEPALRYTALLNGKIDLVEAYSTDSDLKQY 434
Query: 208 NIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNN 265
+ L +I+ F ++++++ ++ P+I L + K S A EM +
Sbjct: 435 RLAVLSD--DIALFPSYQGAPLMKTEFAEEHPDIVNALNKLAGKISEAEMTEMNYRVKVG 492
Query: 266 KQDRQFVGRTMLRTH 280
+ V R L+ +
Sbjct: 493 GEKPADVARDYLQKN 507
>gi|194017535|ref|ZP_03056146.1| glycine betaine-binding protein [Bacillus pumilus ATCC 7061]
gi|194010807|gb|EDW20378.1| glycine betaine-binding protein [Bacillus pumilus ATCC 7061]
Length = 293
Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats.
Identities = 32/171 (18%), Positives = 70/171 (40%), Gaps = 4/171 (2%)
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
+++ I GI+PG+ + + ++ AS A + +++ P +
Sbjct: 33 QQVNKTIIGIDPGSGIMALTDQAKKDYGLED--WTVVSASSAAMTATLKKSYDRKKPIII 90
Query: 196 LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
W PH + S ++ YL ++ G E ++T+ R + P+ +++L K+S
Sbjct: 91 TGWNPHWMFSRYDLKYLEDPKKSYGEAE-EIHTISRKGFAKDQPDAAKMLGQFKWSQDDM 149
Query: 256 NEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERF 306
E+M I + + + ++ H D + W GV +G + +
Sbjct: 150 GEVMMDI-QDGINPKDAAVKYVKKHKDQVAKWTKGVKKSNGDKVNLAYVAW 199
Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 2/99 (2%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGY 82
+ V A W A+T + + +L E LG+K + + + ++ D +
Sbjct: 187 SNGDKVNLAYVAWDSEIASTNVAAEVLRE-LGFKVTLTQVEAGPMWTAIATGSADASLSA 245
Query: 83 WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
W P+ K A +G + +++G + L V
Sbjct: 246 WLPNTHKTYA-AKFKGKYDDLGTSMKGLRMGLVVPTYMK 283
>gi|117618403|ref|YP_857863.1| glycine betaine transporter periplasmic subunit [Aeromonas
hydrophila subsp. hydrophila ATCC 7966]
gi|117559810|gb|ABK36758.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine-binding protein [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 333
Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats.
Identities = 41/304 (13%), Positives = 93/304 (30%), Gaps = 32/304 (10%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI-KLLAVPVTFRSLKN 73
+++ V+ + + + T + S ++ LGY + + V + S+
Sbjct: 24 AMASTELPGEGVRVQPLQSSLPEESFQTLLVSKLM-ARLGYDVQPAQEVDYNVAYASVAQ 82
Query: 74 KGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAK 133
W P + + GA ++ + K
Sbjct: 83 GDGTFLAFNWIPLQNNKYEQAGGDKVFFREGTYVAGAAQGYLIDKQTATRYGITNLGQLK 142
Query: 134 YKK---------ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
K + A + G PG + I + + + + A + R
Sbjct: 143 DPKLAALFDGDGDGKADLVGCNPGWGCEEAINRHLAGFGLT-PTVTHKQGNYAALIADTR 201
Query: 185 RDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEE-------------ISGFGEASVY 227
+ P ++ +W P+ ++S+ ++ +L + GF +++
Sbjct: 202 ARYQAGKPVLYYTWTPYWLSSELVPGKDVVWLEVPADGPDAAKTRLPNGKNYGFPVNTMH 261
Query: 228 TVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV---GRTMLRTHPDLL 284
V + + P +RL +K + N L+ + V L+ H L+
Sbjct: 262 IVANKQFAEANPAAARLFSIVKLPLNDINVQNGLMNKGQNKPADVERHADAWLKGHEALV 321
Query: 285 KNWL 288
+WL
Sbjct: 322 NDWL 325
>gi|195978160|ref|YP_002123404.1| glycine betaine/carnitine/choline transport system permease protein
OpuCB [Streptococcus equi subsp. zooepidemicus
MGCS10565]
gi|195974865|gb|ACG62391.1| glycine betaine/carnitine/choline transport system permease protein
OpuCB [Streptococcus equi subsp. zooepidemicus
MGCS10565]
Length = 505
Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats.
Identities = 32/290 (11%), Positives = 78/290 (26%), Gaps = 19/290 (6%)
Query: 5 LAVCLFLTTFS---ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
A L L S + R + + A + + ++E+ K +K
Sbjct: 208 FAATLLLLLISYTPMFVKRFVNQSNTLVIAGKLGVEPDILINIYKELIEDQSKLKVELKP 267
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL----EEGSIKLVAENLQGAKYMLA 115
+ +LK+ IDI+ + + + + L A+ + L
Sbjct: 268 NFGKTSFLYEALKSGDIDIYPEFTGTITSSLLKKKPKLSNDPNQVYLAAKEGIAEQDQLI 327
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGI------EPGNEGNQRILDMINNNKFSLKGF 169
+ + K E + + D + K +
Sbjct: 328 LLKPFAYQNTYAVAMPEKIADEFNIQSISDVKKYEKQLKAGFTLEFKDREDGYKGMKGKY 387
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV 229
L + + + ++ + ++ + L + F +
Sbjct: 388 GLHLSVATMEPALRYQAIQSGNIQLTDAYSTDAEIVKYQLRVLKD--DKQLFPPYQGAPL 445
Query: 230 VRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+++ L K P++ +L + K + M + + V L
Sbjct: 446 MKASLLRKHPHLKTILNQLSGKITEEEMQAMNYEVSVKGRAASLVAHDYL 495
>gi|319761856|ref|YP_004125793.1| substrate-binding region of abc-type glycine betaine transport
system [Alicycliphilus denitrificans BC]
gi|330826292|ref|YP_004389595.1| glycine betaine ABC transporter periplasmic protein [Alicycliphilus
denitrificans K601]
gi|317116417|gb|ADU98905.1| Substrate-binding region of ABC-type glycine betaine transport
system [Alicycliphilus denitrificans BC]
gi|329311664|gb|AEB86079.1| ABC-type glycine betaine transport, periplasmic subunit
[Alicycliphilus denitrificans K601]
Length = 336
Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats.
Identities = 44/306 (14%), Positives = 89/306 (29%), Gaps = 36/306 (11%)
Query: 18 YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRSLKNKGI 76
A V+ + + T + L + LGY+ IK + P ++ N
Sbjct: 26 AADLPGKGITVQPLKSSIAEETFQTLLVMKAL-QKLGYEVQPIKEVEYPTAHIAIANGDA 84
Query: 77 DIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKK 136
+W P + + + A ++ + K K
Sbjct: 85 TFMADHWNPLHADYYKNAGGDAKLYRKGIFSANAAQGYLIDKKTADQYKITNIAQFKDPK 144
Query: 137 ---------ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQ 187
+ A + G PG I ++ + + S A +
Sbjct: 145 IAALFDSNGDGKADLTGCNPGWGCEAVIEHQLDAYQLR-GTVTHNQGSYSALIADTITRY 203
Query: 188 RNNIPAVFLSWEPHPINSD----LNIHYLPGGE-----------------EISGFGEASV 226
R P + +W P+ ++++ ++ +L + GF +
Sbjct: 204 RAGKPVFYYTWTPYWVSNELKPGKDVVWLEVPFSSLPGEQKGMDTKLPNDKNYGFVVNNQ 263
Query: 227 YTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI---LNNKQDRQFVGRTMLRTHPDL 283
V + +K P +RL + ++ SVA N L+ N D + + H
Sbjct: 264 QIVANKAWAEKNPAAARLFEVMQLSVADINAQNHLMSQGQNKNADIERHANGWIAAHRKT 323
Query: 284 LKNWLI 289
W+
Sbjct: 324 FDGWIE 329
>gi|160898107|ref|YP_001563689.1| glycine betaine transporter periplasmic subunit [Delftia
acidovorans SPH-1]
gi|160363691|gb|ABX35304.1| Substrate-binding region of ABC-type glycine betaine transport
system [Delftia acidovorans SPH-1]
Length = 348
Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats.
Identities = 34/305 (11%), Positives = 82/305 (26%), Gaps = 36/305 (11%)
Query: 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI-KLLAVPVTFRSLKNKGID 77
+ V + + + T + LE LGY + + P ++ N
Sbjct: 39 SDQPGKGVKVSPLKSSIAEESFQTLIVMKALE-KLGYDVQPFQEVEYPTAHVAIANGDAT 97
Query: 78 IFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQ-------- 129
+W P + + + A ++ +
Sbjct: 98 FLATHWNPLHADYYKNAGGDAKLFRKGVYSDNAAQGYLIDKKTADEYKITNIGQLKDPKI 157
Query: 130 -DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQR 188
+ + A + G PG I + K + + A + +
Sbjct: 158 AKLFDSDGDGKADLTGCTPGWGCEAVIEHHLTAYKLRDT-VTHKQGTYSALIADTISRYK 216
Query: 189 NNIPAVFLSWEPHPINSD----LNIHYLPGGE-----------------EISGFGEASVY 227
P ++ +W P+ +++ ++ +L + GF
Sbjct: 217 AGKPILYYTWTPYWVSNVLKPGKDVVWLEVPFSSLPGEQAKFDTKLPNGKNYGFVVNKQQ 276
Query: 228 TVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV---GRTMLRTHPDLL 284
V + DK P+ +L + ++ V + ++ + + ++ H
Sbjct: 277 IVANKAFTDKHPDAGKLFELMQLPVGDISAQNHMMSQGQNKPSDINRHVDGWIKAHQKTF 336
Query: 285 KNWLI 289
WL
Sbjct: 337 DGWLE 341
>gi|188527337|ref|YP_001910024.1| osmoprotection protein (proWX) [Helicobacter pylori Shi470]
gi|188143577|gb|ACD47994.1| osmoprotection protein (proWX) [Helicobacter pylori Shi470]
Length = 553
Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats.
Identities = 33/278 (11%), Positives = 81/278 (29%), Gaps = 31/278 (11%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL---AVPVTFRSLKNKGID 77
+A P+ A ++ + S++LE+ +L D
Sbjct: 283 NAIEEKPLVVAAKPSSEQYILGEILSLLLEKH-HIPIKRAFGIGGGTMNIHPALIRGDFD 341
Query: 78 IFMGYWYPSLEKFIAP--------------YLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+++ Y + + Y +E ++ V Y LA++
Sbjct: 342 LYVEYTGTAWVNTLKNPLTQKVDFETIKKRYEKEFNLLWVGLLGFNNTYSLAISKEDAQK 401
Query: 124 GIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ + + +G E E ++ F + +
Sbjct: 402 Y--AIETFSDLAFHSPNFDFGAEFDFFEREDAFKGLVKAYPF------HFRSLHEMDINL 453
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ ++ + +L++ L + V+R + + K P
Sbjct: 454 RYKSFESHKINALDVFTTDAQIKELDLRVLKDDKGFF--PNYQAGIVMRKEIVKKYPEAL 511
Query: 243 RLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
++L+ + KFS + ++ + K+ Q V + L
Sbjct: 512 KILEKLDSKFSDEVMQDLNYQVEVLKKSPQIVAKDFLE 549
>gi|330684025|gb|EGG95783.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Staphylococcus epidermidis
VCU121]
Length = 308
Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats.
Identities = 45/301 (14%), Positives = 113/301 (37%), Gaps = 16/301 (5%)
Query: 1 MYKILAVCLFLTTFSISYARDADSC------TPVRFADTGWTDIAATTAMTSVILEEILG 54
++ +A+ + L+ + + + A T + + +L++ G
Sbjct: 12 LFATIALAIVLSACGNGGGSSSKDDNTSLGNKEIELPYIASDNSAPRTLVIAEVLKKA-G 70
Query: 55 YKTNIKLLA-VPVTFRSLKNKGIDIFMGYWYPSLEK-FIAPYLEEGSIKLVAENLQGAKY 112
Y + + S+ +PS +K + Y + S+ + K
Sbjct: 71 YDVTTTPVQASGPLYASVAENPDSFHASGIFPSTDKSYYNKYKSKLSVYDKKNLVDDVKV 130
Query: 113 MLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
LAV I S D+ K+ +I G + N ++ ++ + G+ L
Sbjct: 131 GLAVPKY--EQNIDSIADLKDN-KKFDKEIQGTDARNGVMKQTKSELDEDNLD--GYSLK 185
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRS 232
E+S+ F +++ + P +F + + + +L + L ++I G + + V
Sbjct: 186 ESSDQDQFKAVQKAYKQQQPILFTAMDSSWFSKELGVKMLKDPDKIYGKEDQHINLVFNK 245
Query: 233 DYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIG 290
++ P + + +S E+++ K I ++++ + V + + + + + WL G
Sbjct: 246 EFKANHPAAYTIATRMSDDWSKKDEDQLAKKIFKDQKNPEQVAKDYVDDNDNKVDEWLEG 305
Query: 291 V 291
+
Sbjct: 306 I 306
>gi|300215311|gb|ADJ79726.1| Glycine betaine transport system permease protein/glycine
betaine-binding protein [Lactobacillus salivarius CECT
5713]
Length = 507
Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats.
Identities = 37/301 (12%), Positives = 86/301 (28%), Gaps = 35/301 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILE---EILGYKTNIK 60
I+ V + +Y+ A+ + A ++ M ++E + +
Sbjct: 211 IVFVGILALLGGGAYSVYANRVETITIAGKLGSEPDILINMYKQLIEAEDDHIHVTLKPN 270
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFI------------------APYLEEGSIKL 102
F +LKN IDI+ + LE + ++ +
Sbjct: 271 FGKTTFLFSALKNNQIDIYPEFTGSVLETLVKGNNPASQTANQTYQLAKKRLAKQEQMTY 330
Query: 103 VAENLQGAKYMLAV-NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINN 161
+ Y LAV +K+ D+ + + L + + + + +
Sbjct: 331 LKPMQYNNTYALAVTKKFQQEHHLKTISDLTQVESILKPGMTL--EFIDRDDGLKGIKKT 388
Query: 162 NKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
++ + + ++ N+ L + F
Sbjct: 389 YGLD-------VTAKSMEPALRYEAISKGKINLVDAYATDSELRQYNLALLKD--DKHFF 439
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++++ + +K P + + L + K S EM + K+ V L
Sbjct: 440 PTYQGAPLMKTSFANKHPKVVQALNKLADKISETDMQEMNYEVNVKKKSASTVAHNYLVK 499
Query: 280 H 280
H
Sbjct: 500 H 500
>gi|261837952|gb|ACX97718.1| betaine/proline/choline ABC transporter transmembrane component
[Helicobacter pylori 51]
Length = 521
Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats.
Identities = 33/278 (11%), Positives = 82/278 (29%), Gaps = 31/278 (11%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL---AVPVTFRSLKNKGID 77
+A P+ A ++ + S++LE+ +L D
Sbjct: 251 NAIEEKPLVVAAKPSSEQYILGEILSLLLEKH-HIPIKRAFGIGGGTMNIHPALLRGDFD 309
Query: 78 IFMGYWYPSLEKFIAP--------------YLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+++ Y + + Y +E ++ V Y LA++
Sbjct: 310 LYVEYTGTAWVNTLKNPLTQKVDFETIKKRYEKEFNLLWVGLLGFNNTYSLAISKEDAQK 369
Query: 124 GIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ + + +G E E ++ +F + +
Sbjct: 370 Y--AIETFSDLAFHSPNFDFGAEFDFFEREDAFKGLVKAYRF------HFRSLHEMDINL 421
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ ++ + +L++ L + V+R + + K P
Sbjct: 422 RYKSFESHKINALDVFTTDAQIKELDLKVLKDDKGFF--PNYQAGIVMRKEIVKKYPEAL 479
Query: 243 RLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
++L+ + KFS + ++ + K+ Q V + L
Sbjct: 480 KILEKLDSKFSDEVMQDLNYQVEVLKKSPQIVAKEFLE 517
>gi|259503287|ref|ZP_05746189.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, binding protein [Lactobacillus antri DSM
16041]
gi|259168742|gb|EEW53237.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, binding protein [Lactobacillus antri DSM
16041]
Length = 300
Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats.
Identities = 28/297 (9%), Positives = 85/297 (28%), Gaps = 30/297 (10%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-L 62
+LA + + I A S P+ ++ + + ++ LE GYK K +
Sbjct: 12 LLAATVLILGTVIPAVASASSSKPIIVGSKNVSESKTVSEIYALALEHE-GYKVTRKPNV 70
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPY----------------LEEGSIKLVAEN 106
A V F++ + +D++ Y +E ++ +++ +
Sbjct: 71 ANNVIFQATQRGQVDVYPDYTGTIVEAYLKKRASGKSASEIAKIAQQGVKKDGLTTFDYA 130
Query: 107 LQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSL 166
+ +A+ + + + + + + + M
Sbjct: 131 PGDNRQGIAMPTKVAKKDHITDLSQLQKRAD-KVRFASQGEFEKRADALPAMNKAYG--- 186
Query: 167 KGFRLIEASELASFS-QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEAS 225
+ S + + + + + + + +
Sbjct: 187 ---KFNFKSIKDYDANLLYKIMEQGKADAAPVSTTDGQLATGKFTLIKD--NKNIWPPYN 241
Query: 226 VYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ V + P ++ L + K + + K + + Q+ + V + + +
Sbjct: 242 LVPVANQKAVKSHPKMAATLNKVDAKLTTKQLTALNKKVNVDGQNYKDVAKNWYKQN 298
>gi|157691068|ref|YP_001485530.1| glycine betaine ABC transporter binding protein [Bacillus pumilus
SAFR-032]
gi|157679826|gb|ABV60970.1| glycine betaine ABC superfamily ATP binding cassette transporter,
binding protein [Bacillus pumilus SAFR-032]
Length = 293
Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats.
Identities = 32/171 (18%), Positives = 70/171 (40%), Gaps = 4/171 (2%)
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
+++ I GI+PG+ + + ++ AS A + +++ P +
Sbjct: 33 QQVNKTIIGIDPGSGIMALTDQAKKDYGLED--WTVVSASSAAMTATLKKSYDRKKPIII 90
Query: 196 LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
W PH + S ++ YL ++ G E ++T+ R + P+ +++L K+S
Sbjct: 91 TGWNPHWMFSRYDLKYLDDPKKSYGEAE-EIHTISRKGFAKDEPDAAKMLGQFKWSQDDM 149
Query: 256 NEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERF 306
E+M I + + + ++ H D + W GV +G + +
Sbjct: 150 GEVMIDI-QDGINPKDAAVKYVKKHKDQVAKWTKGVKKSNGAKVNLAYVAW 199
Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats.
Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 2/99 (2%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGY 82
+ V A W A+T + + +L E LG+K + + + ++ D +
Sbjct: 187 SNGAKVNLAYVAWDSEIASTNVAAEVLRE-LGFKVTLTQVEAGPMWTAIATGSADASLSA 245
Query: 83 WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
W P+ K A +G + +++G + L V
Sbjct: 246 WLPNTHKTYA-AKFKGKYDDLGTSMKGLRMGLVVPTYMK 283
>gi|91223854|ref|ZP_01259118.1| ABC superfamily (glycine/betaine/proline transport protein) [Vibrio
alginolyticus 12G01]
gi|91191346|gb|EAS77611.1| ABC superfamily (glycine/betaine/proline transport protein) [Vibrio
alginolyticus 12G01]
Length = 335
Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats.
Identities = 40/325 (12%), Positives = 93/325 (28%), Gaps = 39/325 (12%)
Query: 2 YKILAVCLFLTTFSIS---YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
K L+V T + + V+ + + T + + LEE LGY
Sbjct: 6 KKALSVGALSTIAFSTYGVASELPGEGVTVQPVQSTVAEETFQTLIVNRALEE-LGYDVK 64
Query: 59 -IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
K + V + S+ W+P + + + GA ++
Sbjct: 65 PTKEVDYNVGYTSIAKGDATFLAVGWFPLHADKYTMSGGDDKFFRKGQYVSGAAQGYLID 124
Query: 118 DVGFALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
+ + + A + G PG + ++ K
Sbjct: 125 KKTAEKYNITNIGQLKDPKLAKLFDANGDGKADLTGCNPGWGCEMVVEHQLDAFKLR-GT 183
Query: 169 FRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINS---------------------DL 207
+ + A + + P ++ +W P+ ++
Sbjct: 184 VTHNQGNYAAIIADTISRYKKGDPILYYTWTPYWVSGVLVPGKDVVWLEVPFSSLPGERK 243
Query: 208 NIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQ 267
+I + GF S+ V ++ +K P ++L + IK ++ + ++ K
Sbjct: 244 DIDTTLENGKNYGFEMNSMRIVANKEFTEKNPAAAKLFEIIKLNINDVSAQNMMMSQGKN 303
Query: 268 DRQFV---GRTMLRTHPDLLKNWLI 289
+ ++ + W+
Sbjct: 304 SSADIESHVNGWIKANQKKFDAWVE 328
>gi|294786455|ref|ZP_06751709.1| choline transporter [Parascardovia denticolens F0305]
gi|315226025|ref|ZP_07867813.1| choline ABC superfamily ATP binding cassette transporter,
osmoprotectant binding protein [Parascardovia
denticolens DSM 10105]
gi|294485288|gb|EFG32922.1| choline transporter [Parascardovia denticolens F0305]
gi|315120157|gb|EFT83289.1| choline ABC superfamily ATP binding cassette transporter,
osmoprotectant binding protein [Parascardovia
denticolens DSM 10105]
Length = 545
Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats.
Identities = 33/305 (10%), Positives = 75/305 (24%), Gaps = 30/305 (9%)
Query: 1 MYKILAVCLFLTTF---------SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEE 51
+ KI+ L L + + + A + M ++E
Sbjct: 206 LKKIMVAFLVLVVGLVGSYTPTWATAIQASRSGTETLVIAGKLGPEPEILINMYKQLIEA 265
Query: 52 I--LGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEE---GSIKLVAEN 106
L +++LK IDI+ + E + L
Sbjct: 266 NSSLKVTVKPNFGKTTFLYKALKRGDIDIYPEFSGTITESLLRSKPGASSSKKSTLPDLV 325
Query: 107 LQGAKYMLA------------VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQR 154
+ A+ + +D K++ +
Sbjct: 326 YKQARDGIYQQDQLILLKPMKFSDTYAVAVKKTFAKENGIRDISDLASVQGTATAGFTAE 385
Query: 155 ILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPG 214
D + N+ + L + S + + ++ + N+ L
Sbjct: 386 FNDRDDGNRGLTSLYGLNLTVKTMDPSLRYSAINDGQVQIVDAYSTDAEIAQYNLVTLTD 445
Query: 215 GEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFV 272
F +++ + K P + +L + K S + + M + + V
Sbjct: 446 S--KHLFPPYQGAPLMKESLVRKHPELRTILNELAGKISDSEMSRMNYQVKFEGKPASTV 503
Query: 273 GRTML 277
L
Sbjct: 504 AHDYL 508
>gi|191639540|ref|YP_001988706.1| Glycine betaine/carnitine/choline ABC transporter, substrate
binding and permease protein [Lactobacillus casei BL23]
gi|190713842|emb|CAQ67848.1| Glycine betaine/carnitine/choline ABC transporter, substrate
binding and permease protein [Lactobacillus casei BL23]
gi|327383640|gb|AEA55116.1| Choline transporter [Lactobacillus casei LC2W]
gi|327386832|gb|AEA58306.1| Choline transporter [Lactobacillus casei BD-II]
Length = 510
Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats.
Identities = 30/294 (10%), Positives = 74/294 (25%), Gaps = 19/294 (6%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEI---LGYKTNIK 60
++AV +F S Y + A ++ M ++++ +G
Sbjct: 212 VVAVAIFGMVGSQVYTYVTAPKETITIAGKLGSEPDVLINMYKELIQKADPDVGVTLKSN 271
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQG------AKYML 114
+ +L+ I I+ + L P + ++ AK L
Sbjct: 272 FGQTSFLYNALRTDKIGIYPEFSGTVLASLTKPSAAQQQQVTAGKDNYPLAKKLLAKQGL 331
Query: 115 AVNDVGFALGIK------SYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
+ S+ + +D + K
Sbjct: 332 SYLKPMAYNNTYALVVKESFAKRYDLHTISDLGKIAPSIRAGFDLEFIDRQDGYKGIQSK 391
Query: 169 FRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYT 228
+ L + S + + + ++ L + +
Sbjct: 392 YGLQFKVDSMDASLRYQALDRGQINLTDGYTTDAQLRQYHLVALQDDKGLF--PIYRGAP 449
Query: 229 VVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
++R+ + +K P + L + + + M + + V L H
Sbjct: 450 LMRTAFAEKHPQLVAALNKLAGQITEKQMQTMNYAVSVKNEKAATVAHRYLVQH 503
>gi|308183779|ref|YP_003927911.1| glycine/betaine/carnitine ABC transporter, substrate binding
lipoprotein precursor [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|308047705|gb|ADO00248.1| glycine/betaine/carnitine ABC transporter, substrate binding
lipoprotein precursor [Lactobacillus plantarum subsp.
plantarum ST-III]
Length = 305
Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats.
Identities = 40/177 (22%), Positives = 78/177 (44%), Gaps = 2/177 (1%)
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
Y K ++ I GIE G +++ K ++++ +S A
Sbjct: 27 ACAKPAEYDSHKKLGPQINYTITGIEAGAGVMANTQTLLSKYKLKQANWQIMPSSTAAMI 86
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
S + + +N P V W+PH + + ++ +L + + G GE+ + T+ R P
Sbjct: 87 STLSKAVKNKQPIVVTGWQPHWMVAKYSLKFLKDPKHVYGNGES-MRTITRKGLEKDNPG 145
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQ 297
++LLKN +++++ N +M I N ++Q ++ HP +K W GV G+
Sbjct: 146 ATKLLKNFHWTISMSNPVMLNI-NGGMNKQKAVNQFIKNHPKQVKAWTAGVPNGHGK 201
>gi|297197995|ref|ZP_06915392.1| ABC transport system glycine betaine binding protein [Streptomyces
sviceus ATCC 29083]
gi|297146959|gb|EDY59036.2| ABC transport system glycine betaine binding protein [Streptomyces
sviceus ATCC 29083]
Length = 321
Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats.
Identities = 43/316 (13%), Positives = 91/316 (28%), Gaps = 35/316 (11%)
Query: 6 AVCLFLTTFSISYARDAD--------------SCTPVRFADTGWTDIAATTAMTSVILEE 51
A L + +++ A C A W A A+ + + E
Sbjct: 9 AAGLAVLGLTLTACGGAKVGDSSEAGGSGSSGKCGTFNLAVNPWVGYEADAAVVAYVAEH 68
Query: 52 ILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAK 111
L K K L + ++ +D + W + VA G K
Sbjct: 69 DLKCKVTKKDLKEEIAWQGFGTGEVDAVLENWG---HDDLKKKYITQQKTAVAAGSTGNK 125
Query: 112 Y--MLAVNDVGFA--LGIKSYQDIAKYKKELGAKIYGIEPG---NEGNQRILDMINNNKF 164
V IK+++++ KY + G + + + D
Sbjct: 126 GIIGWYVPPWLAKAHPDIKNWKNLNKYAAKFKTSESGGKGQLLDGDPSYVTNDEALVKNL 185
Query: 165 SLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE------- 217
L + SE A R ++N + +EP S++ + +
Sbjct: 186 KLDFKVVYAGSETALIQAYRNAEKNKQWVIGYFYEPQWFLSEVPLVKVDLPAYKTGCDAD 245
Query: 218 ----ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVG 273
+ + +V + + L+K ++ +N + K I +K +
Sbjct: 246 PAKVACDYPVYDLDKIVSAKFAKSGSPAYDLVKKFNWTNDDQNTVAKYIAVDKMTPEAAA 305
Query: 274 RTMLRTHPDLLKNWLI 289
+ + + + W+
Sbjct: 306 KKWVDANRGKVDAWIK 321
>gi|261339664|ref|ZP_05967522.1| amine ABC transporter, periplasmic amine-binding protein
[Enterobacter cancerogenus ATCC 35316]
gi|288318490|gb|EFC57428.1| amine ABC transporter, periplasmic amine-binding protein
[Enterobacter cancerogenus ATCC 35316]
Length = 299
Score = 122 bits (305), Expect = 7e-26, Method: Composition-based stats.
Identities = 45/301 (14%), Positives = 91/301 (30%), Gaps = 39/301 (12%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL- 62
+ A C S ++A P+ A +T+ +AMT L++ G++ +
Sbjct: 7 LTAFCAAALFTSQTFAA------PLILATKSFTEQHILSAMTVQYLQKK-GFQVQPQTNI 59
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPS---------------LEKFIAPYLEEGSIKLVAENL 107
A ++ ++ NK ID+ Y S + + + + +
Sbjct: 60 ATVISRNAMINKQIDMTWEYTGTSLIIFNHINKRMSPQESYETVKRLDAKHGLVWLKPAD 119
Query: 108 QGAKYMLAVNDVGFALGIKSYQD--------IAKYKKELGAKIYGIEPGNEGNQRILDMI 159
Y A+ + I K E + + + +
Sbjct: 120 MNNTYAFAMQRKRAEAEHITTMSQMVAKIEHIRKTDPENNWMLGLDLEFAGRSDGMKPLQ 179
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
L ++ + + R+ L + ++ L +
Sbjct: 180 AAYNMPLDRPQIRQMDPG----LVYNAVRDGFVDAGLIYTTDGRVKGFDLKVLEDDKGFF 235
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+V VVR D LD P + L + + + + E+ K + + Q Q V R L
Sbjct: 236 --PSYAVTPVVRKDTLDANPGLEEALDTLSAQLNNDVITELNKKVDIDHQSPQQVARDFL 293
Query: 278 R 278
R
Sbjct: 294 R 294
>gi|225868507|ref|YP_002744455.1| glycine betaine ABC transporter permease and substrate binding
protein [Streptococcus equi subsp. zooepidemicus]
gi|225701783|emb|CAW99188.1| putative glycine betaine ABC transporter permease and substrate
binding protein [Streptococcus equi subsp.
zooepidemicus]
Length = 510
Score = 122 bits (305), Expect = 7e-26, Method: Composition-based stats.
Identities = 37/299 (12%), Positives = 85/299 (28%), Gaps = 37/299 (12%)
Query: 5 LAVCLFLTTFS---ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
A L L S + R + + A + + ++E+ K +K
Sbjct: 213 FAATLLLLLISYTPMFVKRFVNQSNTLVIAGKLGVEPDILINIYKELIEDQSKLKVELKP 272
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------EGSIK 101
+ +LK+ IDI+ + + + + +
Sbjct: 273 NFGKTSFLYEALKSGDIDIYPEFTGTITSSLLKKKPKLSNDPNQVYLAAKEGIAEQDQLT 332
Query: 102 LVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN 160
+ Y +A+ + IKS D+ KY+K+L D +
Sbjct: 333 FLKPFAYQNTYAVAMPEKIADEFNIKSISDVKKYEKQLK---------AGFTLEFKDRED 383
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISG 220
K + L + + + ++ + ++ + L +
Sbjct: 384 GYKGIQDKYGLHLSVATMEPALRYQAIQSGNIQLTDAYSTDAEIVKYQLRVLKD--DKQL 441
Query: 221 FGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
F ++++ L K P++ +L + K + M + + V L
Sbjct: 442 FPPYQGAPLMKASLLRKHPHLKTILNQLSGKITEEEMQAMNYEVSVKGRAASLVAHDYL 500
>gi|317178822|dbj|BAJ56610.1| osmoprotection protein [Helicobacter pylori F30]
Length = 554
Score = 122 bits (305), Expect = 7e-26, Method: Composition-based stats.
Identities = 34/278 (12%), Positives = 82/278 (29%), Gaps = 31/278 (11%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL---AVPVTFRSLKNKGID 77
+A P+ A ++ + S++LE+ +L D
Sbjct: 284 NAIEEKPLVVATKPSSEQYILGEILSLLLEKH-HIPIKRAFGIGGGTMNIHPALIKGDFD 342
Query: 78 IFMGYWYPSLEKFIAP--------------YLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+++ Y + + Y +E ++ V Y LA++
Sbjct: 343 LYVEYTGTAWVNTLKNPLTQKVDFETIKKRYEKEFNLLWVGLLGFNNTYSLAISKEDAQK 402
Query: 124 GIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ + + +G E E ++ +F + +
Sbjct: 403 Y--AIETFSDLAFHSPNFDFGAEFDFFEREDAFKGLVKVYRF------HFRSLHEMDINL 454
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ ++ + +L++ L + VVR + + K P
Sbjct: 455 RYKSFESHKINALDVFTTDAQIKELDLKVLKDDKGFF--PNYQAGIVVRKEIVKKYPEAL 512
Query: 243 RLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
++L+ + KFS + ++ + K+ Q V + L
Sbjct: 513 KILEKLDSKFSDEVMQDLNYQVEVLKKSPQIVAKDFLE 550
>gi|257061579|ref|YP_003139467.1| substrate-binding region of ABC-type glycine betaine transport
system [Cyanothece sp. PCC 8802]
gi|256591745|gb|ACV02632.1| Substrate-binding region of ABC-type glycine betaine transport
system [Cyanothece sp. PCC 8802]
Length = 520
Score = 122 bits (305), Expect = 7e-26, Method: Composition-based stats.
Identities = 29/293 (9%), Positives = 73/293 (24%), Gaps = 28/293 (9%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--L 62
L + L F + V +T+ + + +E K + K
Sbjct: 229 LILFSLLGIFHQKIFLTNQASGIVIIGSKNFTEQVILGEVLAQSIEAKTNLKVDRKFNLG 288
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP----------------YLEEGSIKLVAEN 106
+ ++L+ + ID ++ Y + + Y ++ +++++
Sbjct: 289 GTFICHQALQARKIDGYVEYTGTAFTAILEQKPINNPQTVYEKIKQVYHDQFNLEVMPSL 348
Query: 107 LQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSL 166
Y + V A +G +
Sbjct: 349 GFENTYAILVRQKDAQQYQLKTISDASQYSPQWQAGFG-HEFLSREDGYPGLAKTYNL-- 405
Query: 167 KGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV 226
+ + R N + LN+ L ++
Sbjct: 406 ---NFATLPKTMELGLMYRALANQEIDLAAGNSTDGTIPILNLTILEDNKKYF--PPYEA 460
Query: 227 YTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ + PN+ +++ + K S ++ + K+ V L
Sbjct: 461 VPIFNQETFKDYPNLRSIIEQLAGKISAQEMQQLNYQVDGEKKSVNEVVHKFL 513
>gi|239636068|ref|ZP_04677082.1| glycine betaine/carnitine/choline-binding protein [Staphylococcus
warneri L37603]
gi|239598339|gb|EEQ80822.1| glycine betaine/carnitine/choline-binding protein [Staphylococcus
warneri L37603]
Length = 317
Score = 122 bits (305), Expect = 8e-26, Method: Composition-based stats.
Identities = 32/309 (10%), Positives = 79/309 (25%), Gaps = 35/309 (11%)
Query: 1 MYK--------ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEI 52
M K I L L+ S+ D +S V+ T ++ M +++E
Sbjct: 1 MKKHIKYTVILIALSLLVLSGCSLPGLGDGNSKNDVKITTTETSETKIIANMEKLMIEHE 60
Query: 53 LGYKTNIKL----LAVPVTFRSLKNKGIDIFMGYWY---------------PSLEKFIAP 93
K + + + +L+ +++ + P +
Sbjct: 61 TKGKIKPTIIGNLGSSIIQHNALQRGDVNMSAVRYTGTELTSVLNAKPTKDPKKAMAESQ 120
Query: 94 YLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQ 153
L + + G A + ++ +K G++
Sbjct: 121 RLFKKKYDQKYYDSLGFANTYAFMVTKETAKKYHLEKVSDLEKHKDELRLGMDTQWMNRA 180
Query: 154 RILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLP 213
+ K ++ + +N V + + + ++ L
Sbjct: 181 GDGYPAFVKDYGFKF----ASARPMQIGLVYDALKNKKLDVAVGYSTDGRIAAYDLKILK 236
Query: 214 GGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQF 271
+ + + P I LK + K S ++ ++
Sbjct: 237 DDRKFF--PPYDGSPLATEKVIKDNPKIDTALKKLEGKVSTKEMQKLNYEADGKGKEPAI 294
Query: 272 VGRTMLRTH 280
+ L+ H
Sbjct: 295 IAEEYLKKH 303
>gi|49484663|ref|YP_041887.1| glycine betaine/carnitine/choline-binding lipoprotein precursor
[Staphylococcus aureus subsp. aureus MRSA252]
gi|257426612|ref|ZP_05603014.1| glycine betaine/carnitine/choline ABC transporter opuCC
[Staphylococcus aureus subsp. aureus 65-1322]
gi|257429247|ref|ZP_05605634.1| glycine betaine/carnitine/choline ABC transporter opuCC
[Staphylococcus aureus subsp. aureus 68-397]
gi|257431893|ref|ZP_05608256.1| glycine betaine/carnitine/choline ABC transporter opuCC
[Staphylococcus aureus subsp. aureus E1410]
gi|257434854|ref|ZP_05610905.1| glycine betaine/carnitine/choline ABC transporter opuCC
[Staphylococcus aureus subsp. aureus M876]
gi|282902362|ref|ZP_06310255.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Staphylococcus aureus
subsp. aureus C160]
gi|282906790|ref|ZP_06314638.1| osmoprotectant transport system substrate-binding protein
[Staphylococcus aureus subsp. aureus Btn1260]
gi|282909766|ref|ZP_06317575.1| glycine betaine/carnitine/choline ABC transporter opuCC
[Staphylococcus aureus subsp. aureus WW2703/97]
gi|282912012|ref|ZP_06319808.1| glycine betaine/carnitine/choline ABC transporter opuCC
[Staphylococcus aureus subsp. aureus WBG10049]
gi|282915307|ref|ZP_06323084.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Staphylococcus aureus
subsp. aureus M899]
gi|282921030|ref|ZP_06328748.1| osmoprotectant transport system substrate-binding protein
[Staphylococcus aureus subsp. aureus C427]
gi|282925936|ref|ZP_06333584.1| osmoprotectant transport system substrate-binding protein
[Staphylococcus aureus subsp. aureus C101]
gi|283959230|ref|ZP_06376671.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Staphylococcus aureus
subsp. aureus A017934/97]
gi|293497702|ref|ZP_06665556.1| osmoprotectant transport system substrate-binding protein
[Staphylococcus aureus subsp. aureus 58-424]
gi|293511282|ref|ZP_06669978.1| osmoprotectant transport system substrate-binding protein
[Staphylococcus aureus subsp. aureus M809]
gi|293549890|ref|ZP_06672562.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Staphylococcus aureus
subsp. aureus M1015]
gi|295429035|ref|ZP_06821657.1| osmoprotectant transport system substrate-binding protein
[Staphylococcus aureus subsp. aureus EMRSA16]
gi|297589473|ref|ZP_06948114.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Staphylococcus aureus
subsp. aureus MN8]
gi|49242792|emb|CAG41517.1| putative glycine betaine/carnitine/choline-binding lipoprotein
precursor [Staphylococcus aureus subsp. aureus MRSA252]
gi|257276243|gb|EEV07694.1| glycine betaine/carnitine/choline ABC transporter opuCC
[Staphylococcus aureus subsp. aureus 65-1322]
gi|257279728|gb|EEV10315.1| glycine betaine/carnitine/choline ABC transporter opuCC
[Staphylococcus aureus subsp. aureus 68-397]
gi|257282772|gb|EEV12904.1| glycine betaine/carnitine/choline ABC transporter opuCC
[Staphylococcus aureus subsp. aureus E1410]
gi|257285450|gb|EEV15566.1| glycine betaine/carnitine/choline ABC transporter opuCC
[Staphylococcus aureus subsp. aureus M876]
gi|282312765|gb|EFB43169.1| osmoprotectant transport system substrate-binding protein
[Staphylococcus aureus subsp. aureus C101]
gi|282315445|gb|EFB45829.1| osmoprotectant transport system substrate-binding protein
[Staphylococcus aureus subsp. aureus C427]
gi|282321028|gb|EFB51362.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Staphylococcus aureus
subsp. aureus M899]
gi|282323708|gb|EFB54024.1| glycine betaine/carnitine/choline ABC transporter opuCC
[Staphylococcus aureus subsp. aureus WBG10049]
gi|282326340|gb|EFB56644.1| glycine betaine/carnitine/choline ABC transporter opuCC
[Staphylococcus aureus subsp. aureus WW2703/97]
gi|282329689|gb|EFB59210.1| osmoprotectant transport system substrate-binding protein
[Staphylococcus aureus subsp. aureus Btn1260]
gi|282596821|gb|EFC01780.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Staphylococcus aureus
subsp. aureus C160]
gi|283788822|gb|EFC27649.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Staphylococcus aureus
subsp. aureus A017934/97]
gi|290918937|gb|EFD96013.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Staphylococcus aureus
subsp. aureus M1015]
gi|291096633|gb|EFE26891.1| osmoprotectant transport system substrate-binding protein
[Staphylococcus aureus subsp. aureus 58-424]
gi|291465908|gb|EFF08438.1| osmoprotectant transport system substrate-binding protein
[Staphylococcus aureus subsp. aureus M809]
gi|295126794|gb|EFG56438.1| osmoprotectant transport system substrate-binding protein
[Staphylococcus aureus subsp. aureus EMRSA16]
gi|297577984|gb|EFH96697.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Staphylococcus aureus
subsp. aureus MN8]
gi|312437133|gb|ADQ76204.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Staphylococcus aureus
subsp. aureus TCH60]
gi|315194947|gb|EFU25335.1| putative glycine betaine/carnitine/choline-binding lipoprotein
precursor [Staphylococcus aureus subsp. aureus CGS00]
Length = 313
Score = 122 bits (305), Expect = 8e-26, Method: Composition-based stats.
Identities = 28/289 (9%), Positives = 72/289 (24%), Gaps = 27/289 (9%)
Query: 13 TFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL----LAVPVTF 68
S+ + V+ ++ + M +++E K L + +
Sbjct: 20 GCSLPGLGSKSTKNDVKITALSTSESQIISHMLRLLIEHDTHGKIKPTLVNNLGSSTIQH 79
Query: 69 RSLKNKGIDIF-MGYWYPSLEKFIAPYL--------------EEGSIKLVAENLQGAKYM 113
+L N +I + Y L + + N G
Sbjct: 80 NALINGDANISGVRYNGTDLTGVLKEAPIKDPKKAMIATQQGFKKKFDQTFFNSYGFANT 139
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
A + ++ K G++ + ++ +
Sbjct: 140 YAFMVTKETAKKYHLETVSDLAKHSKDLRLGMDSSWMNRKGDGYEGFKKEYGFDFGTVRP 199
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+ + V L + + ++ L + F + V ++
Sbjct: 200 ----MQIGLVYDALNSEKLDVALGYSTDGRIAAYDLKVLKD--DKQFFPPYAASAVATNE 253
Query: 234 YLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
L + P + + + K S + + ++ V L+ H
Sbjct: 254 LLRQHPELKTTINKLTGKISTSEMQRLNYEADGKGKEPAVVAEEFLKKH 302
>gi|261839363|gb|ACX99128.1| osmoprotection protein [Helicobacter pylori 52]
Length = 553
Score = 122 bits (305), Expect = 8e-26, Method: Composition-based stats.
Identities = 36/279 (12%), Positives = 87/279 (31%), Gaps = 33/279 (11%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL---AVPVTFRSLKNKGID 77
+A P+ A ++ + S++LE+ +L D
Sbjct: 283 NAIEEKPLVVATKPSSEQYILGEILSLLLEKH-HIPIKRAFGIGGGTMNIHPALLRGDFD 341
Query: 78 IFMGYWYPSLEKFIAP--------------YLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+++ Y + + Y +E ++ V Y LA++
Sbjct: 342 LYVEYTGTAWVNTLKNPLTQKVDFETIKKRYEKEFNLLWVGLLGFNNTYSLAISKEDAQK 401
Query: 124 G-IKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
I+++ D+A + +G E E ++ +F + +
Sbjct: 402 YAIETFSDLALHSPNFD---FGAEFDFFEREDAFKGLLKAYRF------HFRSLHEMDIN 452
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNI 241
+ ++ + +L++ L + V+R + + K P
Sbjct: 453 LRYKSFESHKINALDVFTTDAQIKELDLKVLKDNKGFF--PNYQAGIVMRKEIVKKYPEA 510
Query: 242 SRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
++L+ + KFS + ++ + K+ Q V + L
Sbjct: 511 LKILEKLDSKFSDEVMQDLNYQVEVLKKSPQIVAKEFLE 549
>gi|159029962|emb|CAO90341.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 509
Score = 122 bits (305), Expect = 8e-26, Method: Composition-based stats.
Identities = 25/275 (9%), Positives = 72/275 (26%), Gaps = 28/275 (10%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGIDIFM 80
S V +T+ + + +E+ + + + + ++K ID ++
Sbjct: 239 SSPGTVVIGSKNFTEQVIVGEILAQEIEKETNLRVDRQFNLGGTLICHEAVKAGKIDGYV 298
Query: 81 GYWYPSLEKFIAP----------------YLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
Y + + Y E+ ++++ + + + +
Sbjct: 299 EYSGTAFTGILREKPLNDARLVFEKLQKIYPEKFNLEVFPSLGFENTFAIVIRGETASQY 358
Query: 125 IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
A +G E E + ++ +
Sbjct: 359 NLKTLSQAAKYTPNWQAGFGYE-FLEREDGYKGLAKTYGL-----TFARPPKVMDLGLMY 412
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
R + + L++ L + + D L K P + ++
Sbjct: 413 RALAEKQVDLVAGNSTDGLIPVLDLVILEDDQRYF--PPYEAVPIFNRDSLQKHPQLRQV 470
Query: 245 LKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
L + K + ++ + + + V + L
Sbjct: 471 LAKLTGKITSGTMQKLNYQVDGRDRRVEEVVKEFL 505
>gi|294668518|ref|ZP_06733615.1| choline transporter [Neisseria elongata subsp. glycolytica ATCC
29315]
gi|291309481|gb|EFE50724.1| choline transporter [Neisseria elongata subsp. glycolytica ATCC
29315]
Length = 505
Score = 122 bits (305), Expect = 9e-26, Method: Composition-based stats.
Identities = 45/304 (14%), Positives = 93/304 (30%), Gaps = 38/304 (12%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILE-EILGYKTNIKL- 61
ILA+ + +S A + V A ++ M +++E E K +K
Sbjct: 208 ILALAVGFGALGLSQVSFAPATQNVVIAGKMGSEPDILINMYKLLIESENPNIKITLKPN 267
Query: 62 -LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEE---------------------GS 99
F +L + IDI+ + LE + E+
Sbjct: 268 FGKTTFLFNALNSGEIDIYPEFTGTVLETLVQVPPEQKNRRLSPDETYQRGKQLLAEQYQ 327
Query: 100 IKLVAENLQGAKYMLAVND-VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
++ + Y LAV + A +K+ D+ + + + D
Sbjct: 328 LEFLPPMSYQNTYALAVKESYSAAHQLKTISDLKQAAP---------DIRAGFSLEFTDR 378
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ K ++ + N+ + ++ + L +I
Sbjct: 379 ADGYKGMQAAGITLKHIVSLEPALRYTALLNDKIDLVEAFSTDAELKQYQLRLLKD--DI 436
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
S F ++++++ K P I L + K S +EM + + + V R
Sbjct: 437 SLFPAYQGAPLMKAEFAAKNPQILAALNRLAGKISETEMSEMNYRVKVQGESAEHVARDY 496
Query: 277 LRTH 280
L +
Sbjct: 497 LEKN 500
>gi|154684793|ref|YP_001419954.1| OpuAC [Bacillus amyloliquefaciens FZB42]
gi|154350644|gb|ABS72723.1| OpuAC [Bacillus amyloliquefaciens FZB42]
Length = 293
Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats.
Identities = 29/161 (18%), Positives = 66/161 (40%), Gaps = 4/161 (2%)
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
++ I GI+PG+ + + + + ++ AS A + +++ P +
Sbjct: 33 DQVNKTIIGIDPGSGIMALTDEAVKDYGLKD--WNVVTASSAAMTATLKKSYDRKKPIIV 90
Query: 196 LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
W PH + S + +L ++ G E ++T+ R+ + + PN +++L K++
Sbjct: 91 TGWTPHWMFSRYKLKFLDDPKKTYGTAE-QIHTITRTGFSKEQPNAAKVLSQFKWTQDDM 149
Query: 256 NEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDG 296
E+M + + ++ H D + W G G
Sbjct: 150 GEVMIAV-EEGEKPAKAAAEYVKKHKDQVAQWTKGAHKVKG 189
Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/103 (18%), Positives = 34/103 (33%), Gaps = 2/103 (1%)
Query: 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDI 78
+ A W A+T + + + LGY + + + ++ D
Sbjct: 183 GAHKVKGDKINLAYVAWDSEIASTNVIGKVF-QDLGYDVKLTQVEAGPMWTAIATGSADA 241
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ W P+ K A +G + V +L G K L V
Sbjct: 242 SLSAWLPNTHKAYASKY-KGKYEDVGTSLTGVKMGLVVPQYMK 283
>gi|84394017|ref|ZP_00992755.1| glycine betaine/L-proline-binding protein [Vibrio splendidus 12B01]
gi|84375354|gb|EAP92263.1| glycine betaine/L-proline-binding protein [Vibrio splendidus 12B01]
Length = 335
Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats.
Identities = 38/324 (11%), Positives = 93/324 (28%), Gaps = 39/324 (12%)
Query: 2 YKILAVCLFLTTFSIS---YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
LAV + T + A V+ + + T + + LEE LGY
Sbjct: 6 KSKLAVSIVSTLAVSTNVWAASLPGEGVSVQPVQSSVAEETFQTLIVNRALEE-LGYDVK 64
Query: 59 -IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+ + V + S+ W+P + + + GA ++
Sbjct: 65 STQEVDYNVGYTSIAKGDATFLTVGWFPLHADKYKMAGGDDKFYREGQYVSGAAQGYLID 124
Query: 118 DVGFALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
+ + + A + G PG I ++ K
Sbjct: 125 KKTAEKYNITNIGQLTDPKIAKLFDADGDGKADLTGCNPGWGCEMVIEHQLSAFKLDDT- 183
Query: 169 FRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP----INSDLNIHYLPGGEEISGFGEA 224
+ + A + + ++ +W P+ + + ++ +L +
Sbjct: 184 VTHNQGNYAAIIADTISRYQKGESILYYTWTPYWVSGVLVPNEDVVWLEVPFSALPGERS 243
Query: 225 SVYT-----------------VVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNK- 266
+V T + ++ P+ ++L + IK ++ + ++ K
Sbjct: 244 NVDTTLSNGKNYGFEMNSMRIIANKEFAKNNPSAAKLFEIIKLNINDVSAQNMMMSKGKN 303
Query: 267 --QDRQFVGRTMLRTHPDLLKNWL 288
D + ++ + W+
Sbjct: 304 SSADIEAHVNGWIKANQSTFDGWI 327
>gi|205374197|ref|ZP_03226996.1| substrate-binding region of ABC-type glycine betaine transport
system [Bacillus coahuilensis m4-4]
Length = 299
Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats.
Identities = 40/298 (13%), Positives = 91/298 (30%), Gaps = 33/298 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLL 62
I+ + L S + + +T+ + MT+ +L+E GY + L
Sbjct: 9 IVGGLICLLLSSCGV-----TGKQISIGGKNFTEQYLLSEMTAFLLKEE-GYNVKQMNNL 62
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE---------------EGSIKLVAENL 107
V +L+N+ +D+ Y +L ++ + I + ++
Sbjct: 63 GSTVVRTALENQQVDLMWEYTGTALITYLGEEPIKDPNKAFDRVKEVDGKNGIIWMNQSD 122
Query: 108 QGAKYMLAV-NDVGFALGIKSYQDIAKYKKELGA--KIYGIEPGNEGNQRILDMINNNKF 164
Y LA+ + L I S D+A Y +E I + + + F
Sbjct: 123 VNNTYALAMNREDAEELSIISISDLADYVREHPGDLTIASDAEFANRPDGLPGVEDTYGF 182
Query: 165 SLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEA 224
++ +R + V +++E ++ L ++
Sbjct: 183 EFGINQVKLMD----IGLTQRALEDGQVDVSVAYETDATIKAYDLVVLKDDQQFF--PPY 236
Query: 225 SVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ ++ P + + I K + + E+ + V L +
Sbjct: 237 RAAVAINEKTYEQYPELKEITAKIGEKLNSDIMRELNYRVDIEGNPVSIVAYDWLVEN 294
>gi|258425011|ref|ZP_05687882.1| glycine betaine/carnitine/choline ABC transporter opuCC
[Staphylococcus aureus A9635]
gi|257844845|gb|EEV68888.1| glycine betaine/carnitine/choline ABC transporter opuCC
[Staphylococcus aureus A9635]
Length = 313
Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats.
Identities = 28/289 (9%), Positives = 73/289 (25%), Gaps = 27/289 (9%)
Query: 13 TFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL----LAVPVTF 68
S+ + V+ ++ + M +++E K L + +
Sbjct: 20 GCSLPGLGSKSTENDVKITALSTSESQIISHMLRLLIEHDTKGKIKPTLVNNLGSSTIQH 79
Query: 69 RSLKNKGIDIF-MGYWYPSLEKFIAPYL--------------EEGSIKLVAENLQGAKYM 113
+L N +I + Y L + + N G
Sbjct: 80 NALINGDANISGVRYNGTDLTGVLKEAPIKDPKKAMIATQQGFKQKFDQTFFNSYGFANT 139
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
A + ++ K G++ + ++ +
Sbjct: 140 YAFMVTKETAKKYHLETVSDLAKHSKDLRLGMDSSWMNRKGDGYEGFKKEYGFDFGTVRP 199
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+ + V L + + ++ L + F + V ++
Sbjct: 200 ----MQIGLVYDALNSGKLDVALGYSTDGRIAAYDLKVLKD--DKQFFPPYAASAVATNE 253
Query: 234 YLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
L + P ++ + + K S + + ++ V L+ H
Sbjct: 254 LLRQHPELTTTINKLTGKISTSEMQRLNYEADGKGKEPAVVAEEFLKKH 302
>gi|71282652|ref|YP_271534.1| putative ABC transporter substrate-binding protein [Colwellia
psychrerythraea 34H]
gi|71148392|gb|AAZ28865.1| putative ABC transporter, substrate-binding protein [Colwellia
psychrerythraea 34H]
Length = 318
Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 45/309 (14%), Positives = 90/309 (29%), Gaps = 29/309 (9%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL 62
K L LF ++ S V W+ + + ++E LG +
Sbjct: 8 KTLFSLLFFSSTLWSKPSHP--TDKVVIPTNNWSSQRVLSNVVGQLIE-NLGTPVEYINI 64
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
+ + +LK I + W PS+ + + G I + +
Sbjct: 65 SADRQWGALKRGVIHFQIEVWEPSMGQEFNKLVANGDIIDLGTHEAKVVEDWWYPKYVED 124
Query: 123 --LGIKSYQDIAKYKKELGAKIY---GIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
+ +Q + K + GI G N D+I RL E
Sbjct: 125 LCPELPQWQALNKCRALFKGSKTTEKGIYFGGPWNYGDADIIRALGLKFAIERL--PDES 182
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE---ISGFGEA---------- 224
A + + P + L+W P+ ++ + ++ E
Sbjct: 183 ALWEALTLAIEKKRPILLLNWSPNWTDNYIEGEFVNFPLYTEQCENIPEWGLNKKLVKDC 242
Query: 225 ------SVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLR 278
+ + K P + L++NI F+ + + L + + Q +
Sbjct: 243 GNRRGGWLKKAAAPNLKQKFPCVYHLIQNISFTNRMITDASSLAVITRLSDQDAANEWSK 302
Query: 279 THPDLLKNW 287
+ +K W
Sbjct: 303 KYAKDIKKW 311
>gi|325266979|ref|ZP_08133649.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Kingella denitrificans
ATCC 33394]
gi|324981479|gb|EGC17121.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, membrane protein [Kingella denitrificans
ATCC 33394]
Length = 505
Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 41/304 (13%), Positives = 90/304 (29%), Gaps = 38/304 (12%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEE---ILGYKTNIK 60
ILA+ + +S + V A ++ M +++E +
Sbjct: 208 ILALAVGFGALGLSQVSFTPATQNVVIAGKMGSEPDILINMYKLLIERENPNIRVTVKPN 267
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEE---------------------GS 99
F +L + IDI+ + LE + E+
Sbjct: 268 FGKTTFLFNALNSGEIDIYPEFTGTVLETLVQVPPEQKNRHLSPDETYRLGKQLLAEQYR 327
Query: 100 IKLVAENLQGAKYMLAVND-VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
++ + Y LAV + G A + + D+ + + + D
Sbjct: 328 LEFLPPMSYQNTYALAVKESYGAAHQLNTISDLKRAAP---------DIRAGFSLEFTDR 378
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ K ++ + N+ + ++ + L +I
Sbjct: 379 ADGYKGMQAAGITLKHIVRLEPALRYTALLNDKIDLVEAFSTDAELKQYQLRLLKD--DI 436
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
+ F ++++++ K P I L + K S A +EM + + + V R
Sbjct: 437 ALFPAYQGAPLMKAEFAAKNPQIVAALNRLAGKISEAEMSEMNYRVKVQGESAENVARDY 496
Query: 277 LRTH 280
L +
Sbjct: 497 LEKN 500
>gi|317011035|gb|ADU84782.1| osmoprotection protein [Helicobacter pylori SouthAfrica7]
Length = 551
Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 34/276 (12%), Positives = 78/276 (28%), Gaps = 29/276 (10%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL---AVPVTFRSLKNKGID 77
A P+ A ++ + S++LE+ +L D
Sbjct: 283 SAIEEKPLVVATKPNSEQYILGEILSLLLEKH-HIPIKRAFGIGGGTMNIHPALLRGDFD 341
Query: 78 IFMGYWYPSLEKFIAP--------------YLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+++ Y + + Y +E ++ V Y LA++
Sbjct: 342 LYVEYTGTAWVNTLKNPLTQKVDFETIKKRYEKEFNLLWVGLLGFNNTYSLAISKEDAQK 401
Query: 124 GIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ + + +G E E +I +F + +
Sbjct: 402 Y--AIETFSDLAFHSPNFDFGAEFDFFEREDAFKGLIKAYRF------HFRSLHEMDINL 453
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ ++ + +L++ L + V+R + + K P +
Sbjct: 454 RYKSFESHKINALDVFTTDAQIKELDLKVLKDDKGFF--PNYQAGVVIRKEIVKKYPKVL 511
Query: 243 RLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLR 278
LL+ IK ++ + K+ Q V + L
Sbjct: 512 ELLEKIKIGDEKMQDLNYQVEVLKKSPQIVAKDFLE 547
>gi|70729922|ref|YP_259661.1| glycine betaine/L-proline ABC transporter periplasmic binding
protein [Pseudomonas fluorescens Pf-5]
gi|68344221|gb|AAY91827.1| glycine betaine/L-proline ABC transporter, periplasmic binding
protein, putative [Pseudomonas fluorescens Pf-5]
Length = 351
Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 48/314 (15%), Positives = 98/314 (31%), Gaps = 50/314 (15%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKG--IDIFMG 81
+ + + WT A + +++ L + + VPV F + +D+
Sbjct: 28 AKDKIVIGEQNWTGAIAIQNILGEVIKSRLDGEVSYLAGDVPVLFAAAAKGDGSVDVLTD 87
Query: 82 YWYPSLEKFIAPYLEEGSIKLVA--ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
W P+ A Y+ G+ LV + G + + G+KS D+ K +
Sbjct: 88 IWLPNQSAAWAKYVTGGTRSLVPNKQPYLGVQGFYIPGYLQDKYGVKSVYDLQKPEVAKL 147
Query: 140 AKIYG--------IEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI 191
+ G G E + F+ F + +++++ +
Sbjct: 148 FEPLGGGKAQLLVGPAGWESTYIGEIKAKDFGFAD-KFESVSTEASVTYAKLAAAYKAQR 206
Query: 192 PAVFLSWEPHPINSDLNIHYLPGG------------------------------------ 215
VF ++ P I S ++ L
Sbjct: 207 GVVFYAYTPDWIFSAFDLRRLDEPAFDGYAQDNKKGDPLYKADGCWKFISPTVDADWLSK 266
Query: 216 -EEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGR 274
+ + +A VY + S + P I+ L+N N+++ I +Q +
Sbjct: 267 SKITCAYPDARVYVLASSALQKRAPRIAAFLENFSIEPQALNDLILKIEKEQQPAAQAAK 326
Query: 275 TMLRTHPDLLKNWL 288
+ HP ++ WL
Sbjct: 327 EWVAAHPQVVNGWL 340
>gi|56707174|ref|YP_163804.1| glycine betaine transporter [Lactobacillus salivarius UCC118]
gi|33321142|gb|AAQ06371.1| glycine betaine transport system permease protein/glycine
betaine-binding protein [Lactobacillus salivarius
UCC118]
Length = 528
Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 37/301 (12%), Positives = 86/301 (28%), Gaps = 35/301 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILE---EILGYKTNIK 60
I+ V + +Y+ A+ + A ++ M ++E + +
Sbjct: 232 IVFVGILALLGGGAYSVYANRVETITIAGKLGSEPDILINMYKQLIEAEDDHIHVTLKPN 291
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFI------------------APYLEEGSIKL 102
F +LKN IDI+ + LE + ++ +
Sbjct: 292 FGKTTFLFSALKNNQIDIYPEFTGSVLETLVKGNNPASQTANQTYQLAKKRLAKQEQMTY 351
Query: 103 VAENLQGAKYMLAV-NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINN 161
+ Y LAV +K+ D+ + + L + + + + +
Sbjct: 352 LKPMQYNNTYALAVTKKFQQEHHLKTISDLTQVESILKPGMTL--EFIDRDDGLKGIKKT 409
Query: 162 NKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
++ + + ++ N+ L + F
Sbjct: 410 YGLD-------VTAKSMEPALRYEAISKGKINLVDAYATDSELRQYNLALLKD--DKHFF 460
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++++ + +K P + + L + K S EM + K+ V L
Sbjct: 461 PTYQGAPLMKTSFANKHPKVVQALNKLADKISETDMQEMNYEVNVKKKSASTVAHNYLVK 520
Query: 280 H 280
H
Sbjct: 521 H 521
>gi|199597817|ref|ZP_03211243.1| ABC-type proline/glycine betaine transport system, permease and
substrate binding protein [Lactobacillus rhamnosus
HN001]
gi|199591253|gb|EDY99333.1| ABC-type proline/glycine betaine transport system, permease and
substrate binding protein [Lactobacillus rhamnosus
HN001]
Length = 510
Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 28/294 (9%), Positives = 77/294 (26%), Gaps = 19/294 (6%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEI---LGYKTNIK 60
++A+ +F + Y+R + A ++ M ++++ +G
Sbjct: 212 VVALAVFGLVGTQVYSRVTAPKETITIAGKLGSEPDILIHMYKELIQKADPDVGVTLKPN 271
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQG------AKYML 114
+ +L+ I+++ + L P + ++ A+
Sbjct: 272 FGQTSFLYNALRTDKINLYPEFSGTVLASLTKPSAAQQQQVAAGKDNYPLAKKLLAQQGF 331
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEP------GNEGNQRILDMINNNKFSLKG 168
A + A + K + + +D + K
Sbjct: 332 AYLKPMAYNNTYALVVKASFAKRYQLQTISDLAKIAPSIRAGFDLEFIDRQDGYKGIQSQ 391
Query: 169 FRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYT 228
+ L + S + + + ++ L + +
Sbjct: 392 YGLQFKVDSMDASLRYQALDRGQINLTDGYTTDAQLRQYHLVALKDDKGLF--PIYRGAP 449
Query: 229 VVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
++R+ + + P + L + + M + Q V L H
Sbjct: 450 LMRAAFAKQHPRLVAALNRLANHITEKQMQAMNYAVSVQNQKAATVAHRYLVQH 503
>gi|229551443|ref|ZP_04440168.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Lactobacillus rhamnosus LMS2-1]
gi|258540812|ref|YP_003175311.1| ABC transporter permease [Lactobacillus rhamnosus Lc 705]
gi|229315168|gb|EEN81141.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Lactobacillus rhamnosus LMS2-1]
gi|257152488|emb|CAR91460.1| ABC transporter, permease protein [Lactobacillus rhamnosus Lc 705]
Length = 510
Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 28/294 (9%), Positives = 76/294 (25%), Gaps = 19/294 (6%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEI---LGYKTNIK 60
++A+ +F + Y+R + A ++ M ++++ +G
Sbjct: 212 VVALAVFGLVGTQVYSRVTAPKETITIAGKLGSEPDILIHMYKELIQKADPDVGVTLKPN 271
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQG------AKYML 114
+ +L+ I+++ + L P + +N A+
Sbjct: 272 FGQTSFLYNALRTDKINLYPEFSGTVLASLTKPSAAQQQQVAAGKNNYPLAKKLLARQGF 331
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEP------GNEGNQRILDMINNNKFSLKG 168
+ A + K + + +D + K
Sbjct: 332 TYLKPMAYNNTYALVVKASFAKRYQLQTISDLAKIAPSIRAGFDLEFIDRQDGYKGIQSQ 391
Query: 169 FRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYT 228
+ L + S + + + ++ L + +
Sbjct: 392 YGLQFKVDSMDASLRYQALDRGQINLTDGYTTDAQLRQYHLVALKDDKGLF--PIYRGAP 449
Query: 229 VVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
++R+ + + P + L + + M + Q V L H
Sbjct: 450 LMRAAFAKQHPRLVAALNRLANHITEKQMQAMNYAVSVQNQKAATVAHRYLVQH 503
>gi|157371970|ref|YP_001479959.1| glycine betaine transporter periplasmic subunit [Serratia
proteamaculans 568]
gi|157323734|gb|ABV42831.1| Substrate-binding region of ABC-type glycine betaine transport
system [Serratia proteamaculans 568]
Length = 331
Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 39/321 (12%), Positives = 88/321 (27%), Gaps = 37/321 (11%)
Query: 4 ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK-L 61
I A+ L + ++A + V+ + + + T + + L + LGY
Sbjct: 6 IWALALTSLLGTQAFAVELPGKGVTVKPLQSTLAEESFQTELVNRALTQ-LGYNVQPTAE 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ + + S+ + W P + + A ++
Sbjct: 65 VEYNIAYTSIASGDATYMAVNWDPLQTDMYQSAGGDKKFYRQGAYITNAAQGYLIDKKTA 124
Query: 122 ALGIKSYQDIAKYKK---------ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
S K + + A + G EPG I I S
Sbjct: 125 DKYHISDISQLKDPELARLFDADGDGKADLAGCEPGWVCGSAINTHIKTYGLS-NTVTQN 183
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEP----HPINSDLNIHYLPGGE------------ 216
+ + A + + P ++ +W P + ++ +L
Sbjct: 184 QGNYSAIIADTLTRYKQGKPVLYFTWTPYWVSDELVPGRDVVWLTVPFSASPGSLKDKDT 243
Query: 217 -----EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQF 271
+ GF + + V + P ++L +K +A N + +
Sbjct: 244 ALSNGKNYGFFVNNEHIVANKQWAQANPAAAKLFAIMKLPLADVNAQNLRMHKGENSADD 303
Query: 272 V---GRTMLRTHPDLLKNWLI 289
+ ++ H W+
Sbjct: 304 IQRHVDGWIKAHQATFDGWVS 324
>gi|94500531|ref|ZP_01307062.1| ABC superfamily (glycine/betaine/proline transport protein)
[Oceanobacter sp. RED65]
gi|94427321|gb|EAT12300.1| ABC superfamily (glycine/betaine/proline transport protein)
[Oceanobacter sp. RED65]
Length = 342
Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 45/332 (13%), Positives = 97/332 (29%), Gaps = 45/332 (13%)
Query: 1 MYKILAVCLFLTTF------------SISYARDADSCTPVRFADTGWTDIAATTAMTSVI 48
M K++ + T S + V+ + + T + +
Sbjct: 4 MKKLILLPALAVTLWGCSEQESESNAVTSSSEMPGKGVEVKGFHSPIAEEKFQTIIINRA 63
Query: 49 LEEILGYKTN-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL 107
LE LGY I+ + + ++ I W P + +
Sbjct: 64 LEA-LGYDVQPIQEIDYSAGYTAIAQNDIQWTPVNWDPLHNEMFNNAGGNEKFFKKGYYI 122
Query: 108 QGAKYMLAVNDVGFALGIKSYQDIAKYKK---------ELGAKIYGIEPGNEGNQRILDM 158
GA V+ D K + + A + G +PG + I
Sbjct: 123 VGAAQGYLVDKATAEKYNIDTIDDLKDPEIAKLFDVSGDGKADLTGCQPGWGCEKVINHQ 182
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP----INSDLNIHYLPG 214
++ ++ S A S + + P V+ +W P+ + ++ +L
Sbjct: 183 LDAFDLR-NTVNHVQGSYAAIISDTIQRYKAGKPVVYYTWTPYWVSGVLIPGEDVVWLEV 241
Query: 215 GE--------------EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMK 260
+ GF S V ++ + P ++L + ++ + K
Sbjct: 242 PYSAHPQGIDTELANGKNYGFSVNSERIVANLEFAEANPAAAKLFEIASLNINAVSAQNK 301
Query: 261 LILNNKQDRQFV---GRTMLRTHPDLLKNWLI 289
LI + + + ++ + D +WL
Sbjct: 302 LIADGENTVADINRHVDNWIKKNKDTFNSWLK 333
>gi|237785599|ref|YP_002906304.1| ABC transporter substrate-binding protein [Corynebacterium
kroppenstedtii DSM 44385]
gi|237758511|gb|ACR17761.1| ABC-type transport system, substrate-binding protein
[Corynebacterium kroppenstedtii DSM 44385]
Length = 359
Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 33/312 (10%), Positives = 72/312 (23%), Gaps = 42/312 (13%)
Query: 4 ILAVCLFLTTFSISYARDAD----------------SCTPVRFADTGWTDIAATTAMTSV 47
+L+V L + + V +T+ +
Sbjct: 49 VLSVFLIGSLTACGLGTSGGFTHNGELAGPVEGKSVDGAHVAVGSKNFTEQIVLGKIAVT 108
Query: 48 ILEEILGYKTN--IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFI-------------- 91
+L+ G + + ++ ID+ Y ++
Sbjct: 109 LLKSA-GAHVDDLTNIPGSNSARSAMLRGNIDMQWEYTGTGWISYLGHDDPIEDSHQQYI 167
Query: 92 --APYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGN 149
+ + + Y LA+ + K
Sbjct: 168 AVRDADRKNGLTWLPPAPMNNTYGLAIRQGKAKQLNITKISQMKDLPLNERTFCLEAEFA 227
Query: 150 EGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNI 209
N M+ L I + LN+
Sbjct: 228 NRNDGFQPMLAEYG---IPPVPSSNISLMDTGAIYSATDRGGCNFGEVFTTDGRIKALNL 284
Query: 210 HYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQ 267
L + F + +V V R+D + K P + L + + K + + ++ + +
Sbjct: 285 RTLED--DQHFFPKYNVAPVFRTDLIRKYPQLEPLFEPVAQKLTNDVLQDLNAKVDVDGD 342
Query: 268 DRQFVGRTMLRT 279
+ V LR
Sbjct: 343 EPSEVAWDWLRE 354
>gi|317177351|dbj|BAJ55140.1| osmoprotection protein [Helicobacter pylori F16]
Length = 518
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 34/278 (12%), Positives = 82/278 (29%), Gaps = 31/278 (11%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL---AVPVTFRSLKNKGID 77
+A P+ A ++ + S++LE+ +L D
Sbjct: 248 NAIEEKPLVVATKPSSEQYILGEILSLLLEKH-HIPIKRAFGIGGGTMNIHPALLRGDFD 306
Query: 78 IFMGYWYPSLEKFIAP--------------YLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+++ Y + + Y +E ++ V Y LA++
Sbjct: 307 LYVEYTGTAWVNTLKNPLTQKVDFETIKKRYEKEFNLLWVGLLGFNNTYSLAISKEDAQK 366
Query: 124 GIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ + + +G E E ++ F + +
Sbjct: 367 Y--AIETFSDLAFHSPNFDFGAEFDFFEREDAFKGLVKAYPF------HFRSLHEMDINL 418
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ ++ + +LN+ L + V+R + + K P
Sbjct: 419 RYKSFESHKINALDVFTTDAQIKELNLKVLKDDKGFF--PNYQAGIVMRKEIVKKYPEAL 476
Query: 243 RLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
++L+ + KFS + ++ + K++ Q V + L
Sbjct: 477 KILEKLDSKFSDEVMQDLNYQVEVLKKNPQIVAKEFLE 514
>gi|332673377|gb|AEE70194.1| osmoprotection protein [Helicobacter pylori 83]
Length = 553
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 35/278 (12%), Positives = 81/278 (29%), Gaps = 31/278 (11%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL---AVPVTFRSLKNKGID 77
+A P+ A ++ + S++LE+ +L D
Sbjct: 283 NAIEEKPLVVAAKPSSEQYILGEILSLLLEKH-HIPIKRAFGIGGGTMNIHPALLRGDFD 341
Query: 78 IFMGYWYPSLEKFIAP--------------YLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+++ Y + + Y +E ++ V Y L+V+
Sbjct: 342 LYVEYTGTAWVNTLKNPLTQKVDFETIKKRYEKEFNLLWVGLLGFNNTYSLSVSKEDAQK 401
Query: 124 GIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ + + +G E E +I F + +
Sbjct: 402 Y--AIETFSDLAFNSPNFDFGAEFDFFEREDAFKGLIKAYPF------HFRSLHEMDINL 453
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ ++ + +LN+ L + V+R + + K P
Sbjct: 454 RYKSFESHKINALDVFTTDAQIKELNLKVLKDDKGFF--PNYQAGIVMRKEIVKKYPEAL 511
Query: 243 RLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
++L+ + KFS + ++ + K+ Q V + L
Sbjct: 512 KILEKLDSKFSDEVMQDLNYQVEVLKKSPQIVAKEFLE 549
>gi|308186888|ref|YP_003931019.1| ABC transport system, periplasmic solute-binding protein precursor
[Pantoea vagans C9-1]
gi|308057398|gb|ADO09570.1| Putative ABC transport system, periplasmic solute-binding protein
precursor [Pantoea vagans C9-1]
Length = 303
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 41/304 (13%), Positives = 92/304 (30%), Gaps = 37/304 (12%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+ K S + A + P+ A +T+ +AMT + L++ G++ K
Sbjct: 6 IKKSAVALTATLLLS----QTAQAAAPLVMATKSFTEQHILSAMTVLWLQKK-GFEVVPK 60
Query: 61 -LLAVPVTFRSLKNKGIDIFMGYWYPS---------------LEKFIAPYLEEGSIKLVA 104
+A + +L NK ID+ Y S + + + + +
Sbjct: 61 RNIATTIGRNALLNKQIDMVWEYTGTSLIIFNHISQPMSSQQAYETVKQLDGKLGLVWLN 120
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQ--------DIAKYKKELGAKIYGIEPGNEGNQRIL 156
Y A+ + + + + ++ + +
Sbjct: 121 PAPMNNTYAFAMTQERAKKEGINTMSQLVAKVEQVRQSDPDHNWRLGLDLEFAGRSDGLK 180
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ +L ++ + + R+ L + N+ L
Sbjct: 181 PLQKTYNLALDRPQIRQMDPG----LVYNAIRDEFVDAGLIYTTDGRVKGFNLKVLED-- 234
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F +V VVR D L P + L + + + E+ K + + + + V R
Sbjct: 235 DKHFFPSYNVTPVVRQDVLASHPGLDSALNQLSAQITNEAITELNKRVDIDHESPEKVAR 294
Query: 275 TMLR 278
L+
Sbjct: 295 DFLQ 298
>gi|254779209|ref|YP_003057314.1| ABC-type transport system, permease; putative
betaine/proline/choline transporter; putative membrane
protein [Helicobacter pylori B38]
gi|254001120|emb|CAX29075.1| ABC-type transport system, permease; putative
betaine/proline/choline transporter; putative membrane
protein [Helicobacter pylori B38]
Length = 556
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 32/278 (11%), Positives = 82/278 (29%), Gaps = 31/278 (11%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL---AVPVTFRSLKNKGID 77
+A P+ A ++ ++S++LE+ +L D
Sbjct: 286 NAIEEKPLVVATKPSSEQYILGEISSLLLEKH-HIPIKRAFGIGGGTMNIHPALIRGDFD 344
Query: 78 IFMGYWYPSLEKFIAP--------------YLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+++ Y + + Y +E ++ V Y LA++
Sbjct: 345 LYVEYTGTAWVNTLKNPLAQKVDFETIKKRYEKEFNLLWVGLLGFNNTYSLAISKEDAQK 404
Query: 124 GIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ + + +G E E ++ +F + +
Sbjct: 405 Y--AIETFSDLAFHSLNFDFGAEFDFFEREDAFKGLVKAYRF------HFRSLHEMDINL 456
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ ++ + +L++ L + V+R + + K P
Sbjct: 457 RYKSFESHKINALDVFTTDAQIKELDLKVLKDDKGFF--PNYQAGIVMRKEVVKKYPEAL 514
Query: 243 RLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
++L+ + K S + ++ + K+ Q V + L
Sbjct: 515 KILEKLDSKISDEMMQDLNYQVEVLKKSPQIVAKDFLE 552
>gi|314935638|ref|ZP_07842990.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Staphylococcus
hominis subsp. hominis C80]
gi|313656203|gb|EFS19943.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Staphylococcus
hominis subsp. hominis C80]
Length = 312
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 21/298 (7%), Positives = 74/298 (24%), Gaps = 27/298 (9%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
+ + L + D++S V+ T ++ + +++E + +
Sbjct: 11 LALSLVVLYGCGLPGLGDSNSKDSVKITATESSETKIVANIEKLMIEHYTNGEIKPIIIG 70
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE---------------EGSIKLVA 104
+ V +L ++ + + + +
Sbjct: 71 NLGSSIVQHNALMRGDANMSAVRFTGTELTSVLDAPPTRDANKAMDESQRLFKKKYNQKY 130
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKF 164
+ G + A + ++ +K G++ ++
Sbjct: 131 YHSLGFENTYAFMVTKETADKYHLEKVSDLEKYKDQLRLGMDTQWMNRAGDGYPAFQKEY 190
Query: 165 SLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEA 224
K +++ + +N + + + + N+ L
Sbjct: 191 GFKF----KSARPMQIGLVYDALKNKKLDIAVGYSTDGRIAAYNLKILKDDRNFF--PPY 244
Query: 225 SVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ + P I + L + S ++ ++ + ++ H
Sbjct: 245 DGSPLATEKLIKDHPEIDKALTKLENTISTKEMQKLNYEADGKGKEPAVIAEEFIKKH 302
>gi|153868714|ref|ZP_01998467.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Beggiatoa sp. PS]
gi|152074707|gb|EDN71537.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Beggiatoa sp. PS]
Length = 621
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 42/297 (14%), Positives = 87/297 (29%), Gaps = 29/297 (9%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILE-EILGYKTNIK 60
K+ VC L + P+ +T+ M + +LE E + K +I
Sbjct: 6 MKLTLVCFTLLFVMTGCS----KVEPIHIGSKDFTEQYILAEMVAQLLEHEKIPVKRSIP 61
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPS--------------LEKFIAPYLEEGSIKLVAEN 106
+++KN +DI+M Y + + I+ +
Sbjct: 62 YGDTFANMQAIKNGDLDIYMEYNGTGLIMLGQHPINDGNKAFAKVKKLFKPLGIEWLDRL 121
Query: 107 LQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGN-QRILDMINNNKFS 165
Y+L + L +K + K + ++ E + + +
Sbjct: 122 GFANNYVLLMRRDRA-LSLKIDKISDLVKIKPDIRMSLDPEFVERPLDGLAALKRRYGLN 180
Query: 166 LKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEAS 225
++ + + + V + D + L E
Sbjct: 181 RMLPVVVNNKKSI----TYQALLDGKVDVAEGFSTEGRIEDFGLMVLKDDLEFF--PVYE 234
Query: 226 VYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+VR D L P + LL+ + + +M + + QD + V + L H
Sbjct: 235 PSPLVRQDALKDYPQLRPLLEKLAGIINTTSMRQMNREVELEGQDYKTVAQDFLVKH 291
>gi|225024938|ref|ZP_03714130.1| hypothetical protein EIKCOROL_01827 [Eikenella corrodens ATCC
23834]
gi|224942269|gb|EEG23478.1| hypothetical protein EIKCOROL_01827 [Eikenella corrodens ATCC
23834]
Length = 505
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 42/295 (14%), Positives = 88/295 (29%), Gaps = 20/295 (6%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEE---ILGYKTNIK 60
ILA+ + +S + V A ++ M +++E +
Sbjct: 208 ILALAVGFGALGLSQISFTPATKNVVIAGKMGSEPDILINMYKLLIERENPNIKVTVKPN 267
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIA-PYLEEGSIKLVAENLQGAKYMLA---- 115
F +L + IDI+ + LE + P ++ E Q K +LA
Sbjct: 268 FGKTTFLFNALNSGEIDIYPEFTGTVLETLVQVPPEQKNRHLSPDETYQRGKQLLAEQYQ 327
Query: 116 --------VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
+ +SY + K + + D + K
Sbjct: 328 LEFLPPMSYQNTYALAVKESYGAAHQLNAISDLKQAAPDIRAGFSLEFTDRADGYKGMQA 387
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
++ + N+ + ++ + L +I+ F
Sbjct: 388 AGITLKHIVSLEPALRYMALLNDKIDLVEAFSTDAELKQYQLRLLKD--DIALFPAYQGA 445
Query: 228 TVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
++++++ K P I L + K S A +EM + + + V R L +
Sbjct: 446 PLMKAEFATKNPQIVAALNRLAGKISEAEMSEMNYRVKVQGESAENVARDYLEKN 500
>gi|170691770|ref|ZP_02882934.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia graminis C4D1M]
gi|170143054|gb|EDT11218.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia graminis C4D1M]
Length = 298
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 41/302 (13%), Positives = 85/302 (28%), Gaps = 31/302 (10%)
Query: 1 MYKIL---AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M A L +F+ S+A + V +T+ MT+ +L+ G+
Sbjct: 1 MKTTFFKRACALVALSFASSWAISCAAA-SVVVGGKNFTEQQLLAEMTTELLQAK-GFTV 58
Query: 58 NIKLL-AVPVTFRSLKNKGIDIFMGYWYPSLEKF---------------IAPYLEEGSIK 101
K V + +N +D++ Y SL + + +
Sbjct: 59 TKKDGLGSAVLRSAQENGQVDVYWEYTGTSLITYNKINDRLSPEDTYRKVKELDAGKGLV 118
Query: 102 LVAENLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKKELGA-KIYGIEPGNEGNQRILDMI 159
+ + Y A+N GI + D+A+ K + +
Sbjct: 119 WLDPSRANNTYSFAMNQDEAKKLGIATLSDLARAIKAGKTLTFASNSEFYARPDGLRPLQ 178
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F + + ++ + L + N L +
Sbjct: 179 KLYGFEFSQDEVKRMDSG----LTYQALKDRQVDIALVFATDGRVPAFNFVILKDDKGFF 234
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
++ V+R LD P + +L ++ K + + K+ V L
Sbjct: 235 --PSYALTPVIRKATLDANPKLGPILNSLSAKLDAPTMARLNASVDVQKKSFSEVSHDFL 292
Query: 278 RT 279
+
Sbjct: 293 KQ 294
>gi|291482687|dbj|BAI83762.1| glycine betaine ABC transporter, glycine betaine-binding protein
[Bacillus subtilis subsp. natto BEST195]
Length = 293
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 35/161 (21%), Positives = 67/161 (41%), Gaps = 4/161 (2%)
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
+++ I GI+PG+ + + + + LI AS A + +++ P +
Sbjct: 33 EQVNKTIIGIDPGSGIMSLTDKAMKDYDLND--WTLISASSAAMTATLKKSYDRKKPIII 90
Query: 196 LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
W PH + S + YL ++ G E ++T+ R + + PN ++LL K++
Sbjct: 91 TGWTPHWMFSRYKLKYLDDPKQSYGSAE-EIHTITRKGFSKEQPNAAKLLSQFKWTQDEM 149
Query: 256 NEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDG 296
E+M + + V + H D + W GV G
Sbjct: 150 GEIMIKV-EEGEKPAKVAAEYVNKHKDQIAEWTKGVQKVKG 189
Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 2/98 (2%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYW 83
+ A W A+T + +LE+ LGY+ + + + ++ D + W
Sbjct: 188 KGDKINLAYVAWDSEIASTNVIGKVLED-LGYEVTLTQVEAGPMWTAIATGSADASLSAW 246
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
P+ K A +G + ++ G K L V
Sbjct: 247 LPNTHKAYAAKY-KGKYDDIGTSMTGVKMGLVVPQYMK 283
>gi|327440569|dbj|BAK16934.1| periplasmic glycine betaine/choline-binding protein of an ABC-type
transport system [Solibacillus silvestris StLB046]
Length = 298
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 35/282 (12%), Positives = 75/282 (26%), Gaps = 29/282 (10%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--LLAVPVTFRSLKNKGID 77
+R T+ T + +LE + + L + V +++ N +
Sbjct: 16 ACGKEDDKLRVGSVVSTEGQITAYIVKGMLEHYTDEEVELIKNLGSAVVLHQAMLNGDAN 75
Query: 78 IFMGYWYPSL-----------------EKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
I + + + + +E + Y V
Sbjct: 76 ISAVRYTGTDLTGALGQEPDSDPEQALKMVQEIFQKEYQMTFFDSYGFNNTYAFMVTKET 135
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ I+ KK G++ + + K R+
Sbjct: 136 AEKFGLT--KISDLKKVAQDLQLGVDTSWMNRDGDGYKAFSEAYGFKFGRVFP----MQI 189
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ N V L + + ++ L ++ F ++ L+K P
Sbjct: 190 GLVYDAVAQNEVDVVLGYTTDGRIASYDLTVLED--DLHFFPAYDASPFADTELLEKKPE 247
Query: 241 ISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ L+ + K S + L NN + V L+ H
Sbjct: 248 VRNALQRLVGKISTEEMQRLNFLADNNLIEPAVVAEEFLKEH 289
>gi|299529136|ref|ZP_07042584.1| glycine betaine transporter periplasmic subunit [Comamonas
testosteroni S44]
gi|298722892|gb|EFI63801.1| glycine betaine transporter periplasmic subunit [Comamonas
testosteroni S44]
Length = 351
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 39/317 (12%), Positives = 91/317 (28%), Gaps = 36/317 (11%)
Query: 7 VCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVP 65
++T + + V+ + + A T + LE LGY+ +K + P
Sbjct: 28 ALSMVSTAAFAADELPGKGVKVQPLKSSIAEEAFQTQLVMKALE-KLGYEVQPMKEVEYP 86
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
+L N +W P + + + A ++
Sbjct: 87 TAHIALANGDATFMANHWNPLHADYYKNAGGDAKLYRKGVFSANAAQGYLIDKKTADAHK 146
Query: 126 KSY---------QDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ + + A + G PG I + K + +
Sbjct: 147 ITNLGQLKNPEIAKLFDTDGDGKADLTGCTPGWGCEAMIEHQLGAYKLRDT-VTHKQGTY 205
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGE---------------- 216
A + + P ++ +W P+ +++ ++ +L
Sbjct: 206 SALMADTITRYKAGKPILYYTWTPYWVSNVLKPGKDVVWLQVPFSALPGEQSGTDTKLAN 265
Query: 217 -EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRT 275
+ GF + V + ++ P ++L + IK V N ++ + + R
Sbjct: 266 GKNYGFIANNQQIVANKAWAEQNPAAAKLFEIIKLPVGDINAQNYMMSQGQNKASDIERH 325
Query: 276 ---MLRTHPDLLKNWLI 289
++ H W+
Sbjct: 326 TDGWIKAHQKTFDGWIS 342
>gi|210135018|ref|YP_002301457.1| osmoprotection protein [Helicobacter pylori P12]
gi|210132986|gb|ACJ07977.1| osmoprotection protein [Helicobacter pylori P12]
Length = 516
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 30/278 (10%), Positives = 79/278 (28%), Gaps = 31/278 (11%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL---AVPVTFRSLKNKGID 77
+A P+ A ++ + S++LE+ +L D
Sbjct: 246 NAIEEKPLVVATKPSSEQYILGEILSLLLEKH-HIPIKRAFGIGGGTMNIHPALIRGDFD 304
Query: 78 IFMGYWYPSLEKFIAP--------------YLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+++ Y + + Y +E ++ V Y LA++
Sbjct: 305 LYVEYTGTAWVNTLKNPLTQKVDFETIKKRYEKEFNLLWVGLLGFNNTYSLAISKEDAQK 364
Query: 124 GIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ + + +G E E ++ +F + +
Sbjct: 365 Y--AIETFSDLAFHSPNFDFGAEFDFFEREDAFKGLVKAYRF------HFRSLHEMDINL 416
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ ++ + +L++ L + V+R + + K P
Sbjct: 417 RYKSFESHKINALDVFTTDAQIKELDLKVLKDDKGFF--PNYQAGIVIRKETIKKYPEAL 474
Query: 243 RLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
+L+ + K + ++ + K+ + V + L
Sbjct: 475 EILEKLDSKINDETMQDLNYQVEVLKKSPKIVAKDFLE 512
>gi|325067515|ref|ZP_08126188.1| glycine/betaine ABC transporter systems periplasmic protein
[Actinomyces oris K20]
Length = 291
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 49/271 (18%), Positives = 97/271 (35%), Gaps = 15/271 (5%)
Query: 18 YARDADSCTPVRFAD-TGWTDIAATTAMTSVILEEILGYKTNIK-LLAVPVTFRSLKNKG 75
+ + +R W+D + T + LE+ GY+ + L + L
Sbjct: 24 CGKGSGGSKRLRLGFLPSWSDGLSMTHLLKTQLEKA-GYQIKLMDLSEAGPLYAGLSQGA 82
Query: 76 IDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK 135
+D+F W +K I+ + A+ +V D I+ I +
Sbjct: 83 VDLFPSAWPDVTQKSYMDKYRTY-IEDLGTYYDSAQLCWSVPDYSSMQSIED---IKPHA 138
Query: 136 KELGAKIYGIEPGNEGNQRIL-DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAV 194
++G KI GIEPG + D+I + + +S +++++ V
Sbjct: 139 SQIGNKIIGIEPGAGLTKVSQEDVIPAYGLGDM--KFLTSSTTGMLAELKKAVDAKQEIV 196
Query: 195 FLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVAL 254
W P N+ + L + G GE ++ + R + P I++ L +IK A
Sbjct: 197 VTLWHPFWANTTYGMRDLKDPKGALGKGEG-LHFLGREGFAQDYPEIAKWLGSIKMDEAT 255
Query: 255 ENEMMKLILN---NKQDRQFVGRTMLRTHPD 282
+ L++N ++ + +P
Sbjct: 256 YGSLEDLVVNTYGEGRE-DEAAIAWAKKYPQ 285
>gi|264677529|ref|YP_003277435.1| substrate-binding region of ABC-type glycine [Comamonas
testosteroni CNB-2]
gi|262208041|gb|ACY32139.1| Substrate-binding region of ABC-type glycine [Comamonas
testosteroni CNB-2]
Length = 351
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 38/317 (11%), Positives = 91/317 (28%), Gaps = 36/317 (11%)
Query: 7 VCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVP 65
++T + + V+ + + A T + LE LGY+ +K + P
Sbjct: 28 ALSMVSTAAFAADELPGKGVKVQPLKSSIAEEAFQTQLVMKALE-KLGYEVQPMKEVEYP 86
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
+L N +W P + + + A ++
Sbjct: 87 TAHIALANGDATFMANHWNPLHADYYKNAGGDAKLYRKGVFSANAAQGYLIDKKTADAYK 146
Query: 126 KSY---------QDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ + + A + G PG I + + + +
Sbjct: 147 ITNLGQLKSPEIAKLFDTDGDGKADLTGCTPGWGCEAMIEHQLGAYELRDT-VTHKQGTY 205
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGE---------------- 216
A + + P ++ +W P+ +++ ++ +L
Sbjct: 206 SALMADTITRYKAGKPILYYTWTPYWVSNVLKPGKDVVWLEVPFSALPGEQSGTDTKLAN 265
Query: 217 -EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRT 275
+ GF + V + ++ P ++L + IK V N ++ + + R
Sbjct: 266 GKNYGFIANNQQIVANKAWAEQNPAAAKLFEIIKLPVGDINAQNYMMSQGQNKASDIERH 325
Query: 276 ---MLRTHPDLLKNWLI 289
++ H W+
Sbjct: 326 TDGWIKAHQKTFDGWIS 342
>gi|321313970|ref|YP_004206257.1| glycine betaine ABC transporter glycine betaine-binding lipoprotein
[Bacillus subtilis BSn5]
gi|320020244|gb|ADV95230.1| glycine betaine ABC transporter (glycine betaine-binding
lipoprotein) [Bacillus subtilis BSn5]
Length = 293
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 35/161 (21%), Positives = 67/161 (41%), Gaps = 4/161 (2%)
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
+++ I GI+PG+ + + + + LI AS A + +++ P +
Sbjct: 33 EQVNKTIIGIDPGSGIMSLTDKAMKDYDLND--WTLISASSAAMTATLKKSYDRKKPIII 90
Query: 196 LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
W PH + S + YL ++ G E ++T+ R + + PN ++LL K++
Sbjct: 91 TGWTPHWMFSRYKLKYLDDPKQSYGSAE-EIHTITRKGFSKEQPNAAKLLSQFKWTQDEM 149
Query: 256 NEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDG 296
E+M + + V + H D + W GV G
Sbjct: 150 GEIMIKV-EEGEKPAKVAAEYVNKHKDQIAEWTKGVQKVKG 189
Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 2/98 (2%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYW 83
+ A W A+T + +LE+ LGY+ + + + ++ D + W
Sbjct: 188 KGDKINLAYVAWDSEIASTNVIGKVLED-LGYEVTLTQVEAGPMWTAIATGSADASLSAW 246
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
P+ K A +G + ++ G K L V
Sbjct: 247 LPNTHKAYAAKY-KGKYDDIGTSMTGVKMGLVVPQYMK 283
>gi|328468886|gb|EGF39846.1| glycine betaine transporter periplasmic subunit [Vibrio
parahaemolyticus 10329]
Length = 335
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 39/325 (12%), Positives = 93/325 (28%), Gaps = 39/325 (12%)
Query: 2 YKILAVCLFLTTFSIS---YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
K L+V T + V+ + + T + + LE LGY
Sbjct: 6 KKALSVGALSTIAFSTYGIAGELPGEGVTVQPVQSTVAEETFQTLIVNRALEA-LGYDVQ 64
Query: 59 -IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
K + V + S+ W+P + + + GA ++
Sbjct: 65 PTKEVDYNVGYTSIAKGDATFLAVGWFPLHADKYTMSGGDDKFFREGQYVSGAAQGYLID 124
Query: 118 DVGFALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
+ + + A + G PG + ++ K
Sbjct: 125 KKTAEKYGITNIGQLKDPKLAKLFDANGDGKADLTGCNPGWGCEMVVEHQLDAFKLRDT- 183
Query: 169 FRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP----INSDLNIHYLPGGE-------- 216
+ + A + + P ++ +W P+ + ++ +L
Sbjct: 184 VTHNQGNYAAIIADTISRYKKGDPILYYTWTPYWVSGVLVPGKDVVWLEVPFSSLPGERK 243
Query: 217 ---------EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQ 267
+ GF S+ V ++ +K P+ ++L + IK ++ + ++ K
Sbjct: 244 DIDTTLKNGKNYGFEMNSMRIVANKEFTEKNPSAAKLFEIIKLNINDVSAQNMMMSQGKN 303
Query: 268 DRQFV---GRTMLRTHPDLLKNWLI 289
+ ++ + W+
Sbjct: 304 SAADIEAHVNGWIKANQTTFDGWIE 328
>gi|325261784|ref|ZP_08128522.1| quaternary amine uptake ABC transporter (QAT) family, periplasmic
substrate-binding protein [Clostridium sp. D5]
gi|324033238|gb|EGB94515.1| quaternary amine uptake ABC transporter (QAT) family, periplasmic
substrate-binding protein [Clostridium sp. D5]
Length = 303
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 47/307 (15%), Positives = 98/307 (31%), Gaps = 40/307 (13%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTP-----------VRFADTGWTDIAATTAMTSVIL 49
M K + V + L + A + +R +T+ + + S+ L
Sbjct: 1 MKKAVIVAVCLAMMTSLAACQSKENKDGGSEGKKEEAVIRVGSKDFTEGMIVSEVYSLAL 60
Query: 50 EEILGYKTNIKL-LAVPVTFRSLKNKGIDIFMGYWYPS----------------LEKFIA 92
E+ GYK +A V SL N ID++ Y + +
Sbjct: 61 EDA-GYKVERVFDIAGSVIHTSLINDEIDMYPEYTGTALLSVLGMDVITDPQKVYDTVKE 119
Query: 93 PYLEEGSIKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEG 151
Y ++ + + + L + LGIK+ D+ K+ EL G +E
Sbjct: 120 EYEKQFQLTWLDYSQANDGQGLVIRTAVANELGIKTISDMQKHASELRFASQG--EFDER 177
Query: 152 NQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHY 211
I + ++S++ N+ V + +D
Sbjct: 178 EDGIPALEKAYGKLDW-----KSSKIYDNGLKYEVLSNDEADVAPVYTTEGQLADKEQFT 232
Query: 212 LPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDR 269
L ++ + ++ V++ L+ P+I+ +L I + + +K++
Sbjct: 233 LLEDDKK-VWPPYNLAPVIQDSVLEAHPDIADILNKISASMDTESLTALNARVDMDKEEI 291
Query: 270 QFVGRTM 276
+ V
Sbjct: 292 EDVALEY 298
>gi|26987606|ref|NP_743031.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas putida KT2440]
gi|24982284|gb|AAN66495.1|AE016278_6 glycine betaine/carnitine/choline ABC transporter, periplasmic
binding protein, putative [Pseudomonas putida KT2440]
Length = 313
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 35/285 (12%), Positives = 81/285 (28%), Gaps = 31/285 (10%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL-AVPVTFRSLKNKGIDIF 79
A +R +T+ +T+ L G+ + + ++ + +D+
Sbjct: 30 QAAEKPLIRIGARVFTEQTVLAEITAQYLRAN-GFDVRVIGGLGSSLARQAQETGQLDLM 88
Query: 80 MGYWYPSLEKF----------------IAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
Y SL + + + + + + Y L +
Sbjct: 89 WEYTGVSLVSYNHIDERMPSAEATYAKVKELDAKKDLIWLTPSKFSNTYALGLPKQVAEA 148
Query: 124 G-----IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
I + + +++ + ++ + + + +
Sbjct: 149 YPQINSISDLNQVLRDERKRNHLVALDTEFANRPDGLVGLKEMYDLQVGRANIRQMDAG- 207
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+ NN L + S N+ L + F + + VVR LD
Sbjct: 208 ---LVYTAMHNNQVFAGLVYTTDGRLSAFNLKLLED--DKHYFPDYTAAPVVRKAVLDAN 262
Query: 239 PNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTHP 281
P + LLK + + ++ + + Q+ V LR HP
Sbjct: 263 PQLVALLKPLAEQLDDETMRQLNAKVDVDHQNPTAVAAAFLREHP 307
>gi|16077369|ref|NP_388182.1| glycine betaine ABC transporter glycine betaine-binding lipoprotein
[Bacillus subtilis subsp. subtilis str. 168]
gi|221308116|ref|ZP_03589963.1| glycine betaine ABC transporter (glycine betaine-binding protein)
[Bacillus subtilis subsp. subtilis str. 168]
gi|221312439|ref|ZP_03594244.1| glycine betaine ABC transporter (glycine betaine-binding protein)
[Bacillus subtilis subsp. subtilis str. NCIB 3610]
gi|221317372|ref|ZP_03598666.1| glycine betaine ABC transporter (glycine betaine-binding protein)
[Bacillus subtilis subsp. subtilis str. JH642]
gi|221321637|ref|ZP_03602931.1| glycine betaine ABC transporter (glycine betaine-binding protein)
[Bacillus subtilis subsp. subtilis str. SMY]
gi|1171921|sp|P46922|OPUAC_BACSU RecName: Full=Glycine betaine-binding protein; Flags: Precursor
gi|984805|gb|AAC43457.1| glycine betaine-binding protein precursor [Bacillus subtilis]
gi|1805372|dbj|BAA08934.1| glycine betain-binding protein precursor [Bacillus subtilis]
gi|2632586|emb|CAB12094.1| glycine betaine ABC transporter (glycine betaine-binding
lipoprotein) [Bacillus subtilis subsp. subtilis str.
168]
Length = 293
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 35/161 (21%), Positives = 67/161 (41%), Gaps = 4/161 (2%)
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
+++ I GI+PG+ + + + + LI AS A + +++ P +
Sbjct: 33 EQVNKTIIGIDPGSGIMSLTDKAMKDYDLND--WTLISASSAAMTATLKKSYDRKKPIII 90
Query: 196 LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
W PH + S + YL ++ G E ++T+ R + + PN ++LL K++
Sbjct: 91 TGWTPHWMFSRYKLKYLDDPKQSYGSAE-EIHTITRKGFSKEQPNAAKLLSQFKWTQDEM 149
Query: 256 NEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDG 296
E+M + + V + H D + W GV G
Sbjct: 150 GEIMIKV-EEGEKPAKVAAEYVNKHKDQIAEWTKGVQKVKG 189
Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 2/98 (2%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYW 83
+ A W A+T + +LE+ LGY+ + + + ++ D + W
Sbjct: 188 KGDKINLAYVAWDSEIASTNVIGKVLED-LGYEVTLTQVEAGPMWTAIATGSADASLSAW 246
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
P+ K A +G + ++ G K L V
Sbjct: 247 LPNTHKAYAAKY-KGKYDDIGTSMTGVKMGLVVPQYMK 283
>gi|323144630|ref|ZP_08079218.1| ABC transporter, substrate-binding protein, QAT family
[Succinatimonas hippei YIT 12066]
gi|322415639|gb|EFY06385.1| ABC transporter, substrate-binding protein, QAT family
[Succinatimonas hippei YIT 12066]
Length = 527
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 34/306 (11%), Positives = 76/306 (24%), Gaps = 38/306 (12%)
Query: 1 MYKILAVCLFLTTFSISYARDA------DSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
M + V + + + A + +T+ + V++E
Sbjct: 226 MQRFSVVLVCMLLVFVPIGTSAYDYYLESQQKKLVIGSNNFTEAIILGYLLQVMVENNTD 285
Query: 55 YKTNIKLLAVPVTFRSLKN--KGIDIFMGYWYPSLEKFIAPYLEEG-------------- 98
K +D F Y L F+ ++
Sbjct: 286 IKVEGSYNLGGAIMELTAMNADELDAFACYTGTILPNFLHEKMDSHDPAAIYKQSKKGLD 345
Query: 99 ---SIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRI 155
IK+ Y++AV + + + + G
Sbjct: 346 ERFGIKISQNIGFNNTYVMAVTPEIARKY--NLKTVKDLMRVADKLRLGCTVEFVHRDDC 403
Query: 156 LDMINNNKFSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPG 214
L + + A I + V ++ + ++ L
Sbjct: 404 LPSLEK------LYNNSFADVRGLDGSIRYSAIASGEVDVIDAFSTDALLFKNDLVLLED 457
Query: 215 GEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFV 272
+ ++R + L++ P I L+K ++ +M + + D + V
Sbjct: 458 KDNFF--PPYDAVYLIRGEALEEYPEIVPLIKQMEGLIDEKAMGKMNMQVDIDGMDARDV 515
Query: 273 GRTMLR 278
LR
Sbjct: 516 AEEFLR 521
>gi|260599073|ref|YP_003211644.1| glycine betaine transporter periplasmic subunit [Cronobacter
turicensis z3032]
gi|260218250|emb|CBA33177.1| Glycine betaine-binding periplasmic protein [Cronobacter turicensis
z3032]
Length = 308
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 35/302 (11%), Positives = 82/302 (27%), Gaps = 36/302 (11%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKLLAVPVTFRSLKNKGIDIFM 80
V+ + ++ + T + S LE LGY + V + S+ +
Sbjct: 2 PGKGITVQPVQSTISEESFQTLLVSRALE-KLGYTVNKTSEVDYNVGYTSIASGDATFTA 60
Query: 81 GYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQ---------DI 131
W P + A + + GA ++ + +
Sbjct: 61 VNWQPLHDDMYAAAGGDKKFYREGTYVTGAAQGYLIDRKTAEKYHITNIAQLKDPKLAKL 120
Query: 132 AKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI 191
+ A + G PG I + + A + +
Sbjct: 121 FDSNGDGKADMMGCTPGWGCEAVINHQNTAYHLQDT-VTVNHGNYAAMMADTIARFKEGK 179
Query: 192 PAVFLSWEPHPIN---------------------SDLNIHYLPGGEEISGFGEASVYTVV 230
P ++ +W P+ ++ +I GF +++ V
Sbjct: 180 PVLYYTWTPYWVSDVLKPGKDVVWLQVPFSSLPGEQKDIDTKLANGNNFGFPVNTMHIVA 239
Query: 231 RSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV---GRTMLRTHPDLLKNW 287
+ +K P ++L +K + N ++ + + + ++ H W
Sbjct: 240 NKAWAEKNPAAAKLFSVMKLPITDINAQNAMMHSGRASEADIQGHVDGWIKAHQPQFDGW 299
Query: 288 LI 289
+
Sbjct: 300 IK 301
>gi|331702353|ref|YP_004399312.1| glycine betaine ABC transporter periplasmic protein [Lactobacillus
buchneri NRRL B-30929]
gi|329129696|gb|AEB74249.1| ABC-type glycine betaine transport, periplasmic subunit
[Lactobacillus buchneri NRRL B-30929]
Length = 507
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 30/306 (9%), Positives = 84/306 (27%), Gaps = 37/306 (12%)
Query: 2 YKI---LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEI---LGY 55
K+ + V L L + ++ V A + M ++++
Sbjct: 208 KKLGIGVLVVLILGGAGLGWSLFNKPAQTVTIAGKMGGEPEILINMYKDLVKQESPQTKV 267
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYP------------------SLEKFIAPYLEE 97
+ F++L++ ID++ + + ++
Sbjct: 268 QLKPNFGGTSFLFKALQSDQIDVYPEFTGTVLQSLVHSPKKVNSEPQLAYRDAKNALSQK 327
Query: 98 GSIKLVAENLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
++ + Y + V +++ D+ + +L + +
Sbjct: 328 FHMRYLKPMAYQNGYAITVRQSTAKKYHLRTIADLQRVGSQLTGAF--DPDFYQQSDGYP 385
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ F L ++ S + V ++ P + ++ L +
Sbjct: 386 GLRKAYHFQL------KSVRTMEPSLRYVALADGRVDVTDAYTTDPQIREYHLVVLKDSK 439
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ ++ + P + R L + K + EM + + V +
Sbjct: 440 QFF--PPYQGAPLMTDQFAKTHPQVVRALSRLAGKITTRDMQEMNYQVTVKHRSAAAVAK 497
Query: 275 TMLRTH 280
L+ H
Sbjct: 498 QYLQQH 503
>gi|257866738|ref|ZP_05646391.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
casseliflavus EC30]
gi|257872745|ref|ZP_05652398.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
casseliflavus EC10]
gi|257800696|gb|EEV29724.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
casseliflavus EC30]
gi|257806909|gb|EEV35731.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
casseliflavus EC10]
Length = 306
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 29/308 (9%), Positives = 71/308 (23%), Gaps = 36/308 (11%)
Query: 1 MYKILAVCLF-------LTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL 53
M K + L L+ S V ++ A+ + ++E
Sbjct: 1 MKKTSKLALLFSLSVALLSGCSFPGLASTSDENTVAITGGITSEAQILGAVVAGMVEHYT 60
Query: 54 GYKTNIKL--LAVPVTFRSLKNKGIDIFMGYWYP-----------------SLEKFIAPY 94
T + + +++ N I + + +K + +
Sbjct: 61 DKNTTVINNLATTTINHQAMMNGDASISAARYTGTDLTTTLGLEPESDPQAAFDKVKSEF 120
Query: 95 LEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQR 154
+ Y+ V + ++ K + G++
Sbjct: 121 EQRYQQTWFPSYGFDNTYVFLVRKDTAEEY--GLEKVSDLKDVADQLVAGVDTAWITRVG 178
Query: 155 ILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPG 214
+ ++ + N + L + ++ L
Sbjct: 179 DGYDGFQKAYGFSFQNILP----MQIGLVYDAVDNGKMDIVLGYSTDGRIGSYDLVMLED 234
Query: 215 GEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFV 272
+V L + P I L + K E+ + N+ + V
Sbjct: 235 DLNFF--PPYDAAPIVDDKLLKETPEIGDALNKLAGKIDTEKMQELNYQVDNDLLEPTVV 292
Query: 273 GRTMLRTH 280
L +
Sbjct: 293 AERFLEEN 300
>gi|85705600|ref|ZP_01036698.1| amino acid ABC transporter, periplasmic amino acid-binding protein
[Roseovarius sp. 217]
gi|85670025|gb|EAQ24888.1| amino acid ABC transporter, periplasmic amino acid-binding protein
[Roseovarius sp. 217]
Length = 285
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 39/272 (14%), Positives = 77/272 (28%), Gaps = 23/272 (8%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M +I+ T ++ A +C V W T++ ++E+ G
Sbjct: 1 MKQIILASAC--TLGLAAPALAQNCGEVTITQMDWASANVVTSVAKFLMEQGYGCDVTTV 58
Query: 61 LLAVPVTFRSL-KNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ P ++ + DI W + + E ++L G L V
Sbjct: 59 PSSTPTALTAVAETGTPDILTELWVNTAPAYAKLVEESKLVELADVLSDGGIEGLFVPQY 118
Query: 120 G--FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKF-SLKGFRLIEASE 176
+ + I +G + G +M F S
Sbjct: 119 VVDAHPEAATLEGILANPDLVGRRFDNCPDGWACRTVNDNMNKVIDFQGAGIEVFNHGSG 178
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI-----------------S 219
+ I + P W P I + + G + S
Sbjct: 179 ETLATAIASAYADKEPWFGFYWSPTAILGKYPMVLVDMGADDAAVHACNSDPECTEPGIS 238
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNIKFS 251
+ A+V T + + + P ++ L+ +I F+
Sbjct: 239 AYPRAAVKTAATATFQAREPEVAELMSHISFT 270
>gi|257876330|ref|ZP_05655983.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
casseliflavus EC20]
gi|257810496|gb|EEV39316.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
casseliflavus EC20]
Length = 306
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 29/308 (9%), Positives = 71/308 (23%), Gaps = 36/308 (11%)
Query: 1 MYKILAVCLF-------LTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL 53
M K + L L+ S V ++ A+ + ++E
Sbjct: 1 MKKTSKLALLFSLGVALLSGCSFPGLASTSDENTVAITGGITSEAQILGAVVAGMVEHYT 60
Query: 54 GYKTNIKL--LAVPVTFRSLKNKGIDIFMGYWYP-----------------SLEKFIAPY 94
T + + +++ N I + + +K + +
Sbjct: 61 DKNTTVINNLATTTINHQAMMNGDASISAARYTGTDLTTTLGLEPESDPQAAFDKVKSEF 120
Query: 95 LEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQR 154
+ Y+ V + ++ K + G++
Sbjct: 121 EQRYQQTWFPSYGFDNTYVFLVRKDTAEEY--GLEKVSDLKDVADQLVAGVDTAWITRVG 178
Query: 155 ILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPG 214
+ ++ + N + L + ++ L
Sbjct: 179 DGYDGFQKAYGFSFQNILP----MQIGLVYDAVDNGKMDIVLGYSTDGRIGSYDLVMLED 234
Query: 215 GEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFV 272
+V L + P I L + K E+ + N+ + V
Sbjct: 235 DLNFF--PPYDAAPIVDDKLLKETPEIGDALNKLAGKIDTEKMQELNYQVDNDLLEPTVV 292
Query: 273 GRTMLRTH 280
L +
Sbjct: 293 AERFLEEN 300
>gi|283471667|emb|CAQ50878.1| glycine betaine/carnitine/choline-binding protein
(Osmoprotectant-binding protein) [Staphylococcus aureus
subsp. aureus ST398]
Length = 313
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 27/289 (9%), Positives = 72/289 (24%), Gaps = 27/289 (9%)
Query: 13 TFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL----LAVPVTF 68
S+ + V+ ++ + M +++E K L + +
Sbjct: 20 GCSLPGLGSKSTKNDVKITALSTSESQIISHMLRLLIEHDTHGKIKPTLVNNLGSSTIQH 79
Query: 69 RSLKNKGIDIF-MGYWYPSLEKFIAPYL--------------EEGSIKLVAENLQGAKYM 113
+L N +I + Y L + + + G
Sbjct: 80 NALINGDANISGVRYNGTDLTGVLKEAPIKDPKKAMIATQQGFKQKFDQTFFDSYGFANT 139
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
A + ++ K G++ + ++ +
Sbjct: 140 YAFMVTKETAKKYHLETVSDLAKHSKDLRLGMDSSWMNRKGDGYEGFKKEYGFDFGTVRP 199
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+ + V L + + ++ L + F + V ++
Sbjct: 200 ----MQIGLVYDALNSEKLDVALGYSTDGRIAAYDLKVLKD--DKQFFPPYAASAVATNE 253
Query: 234 YLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
L + P + + + K S + + ++ V L+ H
Sbjct: 254 LLRQHPELKTTINKLTGKISTSEMQRLNYEADGKGKEPAVVAEEFLKKH 302
>gi|261408313|ref|YP_003244554.1| Substrate-binding region of ABC-type glycine betaine transport
system [Paenibacillus sp. Y412MC10]
gi|261284776|gb|ACX66747.1| Substrate-binding region of ABC-type glycine betaine transport
system [Paenibacillus sp. Y412MC10]
Length = 317
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 33/299 (11%), Positives = 82/299 (27%), Gaps = 30/299 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+ +I + + +I+ A S + +T+ M ++E+ K ++
Sbjct: 23 LKRIPMLVCLMALAAITSACGIQSD--LTIGTQTYTETKIIAEMYKALIEDQTDLKVDVI 80
Query: 61 L--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEE----------------GSIKL 102
+ + ++K + + Y +
Sbjct: 81 PDLASSSLVINAMKRNDVQMATLYTGEIFNNHFPISGTKDRDKVLKEAQEGFQEHFGFTW 140
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
+ Y V + I+ KK++ + G++ +
Sbjct: 141 MNPLGFENTYAFTVRKDLAEANGYT--KISDVKKDMASMKLGVDTTWLERSTDGYPAFSK 198
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
+ +K ++ S + N + L++ + L ++ F
Sbjct: 199 AYDIKFGQVFP----MEISLVYSAVANEQVEIVLAYSTDSRLKAYQLQTLQ--DDQQFFP 252
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
V+RSD L K P I + + + + K+ + V L+
Sbjct: 253 PYDASPVLRSDLLKKHPEIEDTIAPLIGHLDADTMISLNYQVDIEKKSEREVAIAYLKE 311
>gi|269957315|ref|YP_003327104.1| Substrate-binding region of ABC-type glycine betaine transport
system [Xylanimonas cellulosilytica DSM 15894]
gi|269305996|gb|ACZ31546.1| Substrate-binding region of ABC-type glycine betaine transport
system [Xylanimonas cellulosilytica DSM 15894]
Length = 311
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 50/278 (17%), Positives = 89/278 (32%), Gaps = 12/278 (4%)
Query: 12 TTFSISYARDADSCTPVRFADT-GWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRS 70
+ A + V GW + A + + + ILE GY+ + V + +
Sbjct: 34 AGSASDVAMNGTDEAVVSIGVASGWDEGIAVSHLWTTILEAE-GYEVESQTADVGIIYTG 92
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD 130
L DI W P I + AK +AVN+ A ++
Sbjct: 93 LAGGDFDITFDVWLPYTHASYEKKYGA-EITDLGYWYDDAKLTIAVNEDSPAQSLED--- 148
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDM-INNNKFSLKGFRLIEASELASFSQIRRDQRN 189
+A E G K+ GIE G + D I + + +S A ++++
Sbjct: 149 LAAMAGEYGNKLVGIEAGAGLTEITQDQVIPTYGLEDMDYSI--SSTPAMLAELKGATAA 206
Query: 190 NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
W PH + + L E G E V+ D+ ++ P +++L+
Sbjct: 207 GENIAVTLWRPHWAYDEFPVRDLEDPEGSLGEAE-EVHIWGALDFEERYPTLTKLVGAFA 265
Query: 250 FSVALENEM--MKLILNNKQDRQFVGRTMLRTHPDLLK 285
+ M + D L +P +
Sbjct: 266 LDDEQLFSLENMLFNSDEYADEDAAVDAWLEQNPTFVD 303
>gi|108563229|ref|YP_627545.1| osmoprotection protein [Helicobacter pylori HPAG1]
gi|107837002|gb|ABF84871.1| osmoprotection protein [Helicobacter pylori HPAG1]
Length = 512
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 35/279 (12%), Positives = 84/279 (30%), Gaps = 33/279 (11%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL---AVPVTFRSLKNKGID 77
+A P+ A ++ + S++LE+ +L D
Sbjct: 242 NAIEEKPLVVATKPSSEQYILGEILSLLLEKH-HIPIKRAFGIGGGTMNIHPALIRGDFD 300
Query: 78 IFMGYWYPSLEKFIAP--------------YLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+++ Y + + Y +E ++ V Y LA++
Sbjct: 301 LYVEYTGTAWVNTLKNPLTQKVDFETIKKRYEKEFNLLWVGLLGFNNTYSLAISKKDAQK 360
Query: 124 G-IKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
I+++ D+A + +G E E ++ +F + +
Sbjct: 361 YAIETFSDLALHSPNFD---FGAEFDFFEREDAFKGLMKTYRF------HFRSLHEMDIN 411
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNI 241
+ ++ + +L++ L + V+R + + K P
Sbjct: 412 LRYKSFESHKINALDVFTTDAQIKELDLKVLKDDKGFF--PNYQAGIVMRKEIVKKYPEA 469
Query: 242 SRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
+L+ + KFS + + + K+ Q + L
Sbjct: 470 LEILEKLNSKFSDEVMQGLNYQVEVLKKSPQIAAKEFLE 508
>gi|313884830|ref|ZP_07818582.1| glycine betaine/carnitine/choline-binding protein [Eremococcus
coleocola ACS-139-V-Col8]
gi|312619521|gb|EFR30958.1| glycine betaine/carnitine/choline-binding protein [Eremococcus
coleocola ACS-139-V-Col8]
Length = 304
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 38/305 (12%), Positives = 84/305 (27%), Gaps = 34/305 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDAD---SCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M + + L + + A P+R A T+ +A+ ++EE Y
Sbjct: 1 MKRFKTILLMCLSLLVLTACVPGMTSQNHPIRIAGLSTTEGQILSALVQKLIEEETDYPV 60
Query: 58 NIKL--LAVPVTFRSLKNKGIDIFMG-YWYPSLEKFIAPYLEE----------------G 98
+ V+ ++++N DI Y + + +
Sbjct: 61 EMINNLGTSVVSQQAVRNGDADITPARYTGTDMVAVLNETPIKDPNEALAYVQKAFKERF 120
Query: 99 SIKLVAENLQGAKYMLAV-NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILD 157
+ K Y V + +K+ D+ K + A G + +
Sbjct: 121 NYKYYDSYGFNNTYTFLVTPEFAAENNLKTVSDLEKISDTVRA---GFDSQWLVREGDGY 177
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
++ + + + L + + ++ L +
Sbjct: 178 PGFKEEYGFAFDH----TNAMQIGLVYNALAGGAMDLVLGYSSDGRIASYDLVMLED--D 231
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
F + + LD P + LLK + K S E+ + ++ V
Sbjct: 232 KQFFPPYDAAPMATQEILDDYPELDGLLKRLEGKISTEQMQELNYEADHLLKEPSVVAEE 291
Query: 276 MLRTH 280
L +
Sbjct: 292 FLEAN 296
>gi|223044272|ref|ZP_03614308.1| putative ABC transporter, quaternary amine uptake transporter (QAT)
family, substrate-binding protein [Staphylococcus
capitis SK14]
gi|222442336|gb|EEE48445.1| putative ABC transporter, quaternary amine uptake transporter (QAT)
family, substrate-binding protein [Staphylococcus
capitis SK14]
Length = 324
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 52/296 (17%), Positives = 103/296 (34%), Gaps = 20/296 (6%)
Query: 13 TFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA-VPVTFRSL 71
+ S S + V + + + + +L++ GY + + S+
Sbjct: 30 SGSSSDGNTSLGKKDVNIPYIASDNSTPRSLVIAEVLKKA-GYNVTTTPVQASGPLYASV 88
Query: 72 KNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVNDVGFALGIKSYQD 130
+PS +K + +NL K LAV + S +
Sbjct: 89 SQDSDSFHASGIFPSTDKSFYNKFKSNLTVYDKKNLVDNVKVGLAVPKYEQDIDSISDLN 148
Query: 131 IAKYK-------------KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
K K + I G + N ++ ++ L + L E+S+
Sbjct: 149 SKKSTTSSNTGNSSNSFGKSVDWTIQGTDARNGVMKQTKSELD--DGQLDKYSLKESSDQ 206
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDK 237
F I++ + P VF + EP + +L+I L E+I G + + V ++ D
Sbjct: 207 DQFKTIQKAYKQQKPIVFTAMEPSWFSKELDIKMLKDPEKIYGKDDEHINLVFNKNFKDD 266
Query: 238 CPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGV 291
P + I +S E ++ K I + ++ + V + + H + WL G+
Sbjct: 267 HPAAYTIATRISDNWSKDDEEKLAKKIFKDNKNPEDVAKDYVDDHDTKVDKWLKGI 322
>gi|238911725|ref|ZP_04655562.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Tennessee str.
CDC07-0191]
Length = 300
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 38/304 (12%), Positives = 88/304 (28%), Gaps = 37/304 (12%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
K L L T S + A P+ A +T+ +AMT L++ G++ +
Sbjct: 4 KKHLLGWLAATLLFSSQTQAA----PLVLATKSFTEQHILSAMTVQYLQKK-GFQVQPQT 58
Query: 62 LAVPVT-FRSLKNKGIDIFMGYWYPS---------------LEKFIAPYLEEGSIKLVAE 105
V ++ NK IDI Y S + + + + +
Sbjct: 59 NIAAVISRNAMVNKQIDITWEYTGTSLIIFNRIDKRMSPQETYETVKRLDAKLGLVWLKP 118
Query: 106 NLQGAKYMLAVNDVGFALGIKSY--------QDIAKYKKELGAKIYGIEPGNEGNQRILD 157
Y A+ + + + + + + + +
Sbjct: 119 ADMNNTYAFAMQRKRAESENITTISQMVAKIEQVRQNDPDHNWMLGLDLEFAGRSDGMKP 178
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
+ + L ++ + + R+ + L + ++ L +
Sbjct: 179 LQQAYQMQLDRPQIRQMDPG----LVYNAVRDGLVDAGLVYTTDGRVKGFDLKVLEDDKG 234
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRT 275
+V VVR + L+ P + L + + + + + + + Q V
Sbjct: 235 FF--PSYAVTPVVRKEVLEANPGLDDALNTLSGLLNNDVISTLNAQVDIEHRTPQQVAHQ 292
Query: 276 MLRT 279
L+
Sbjct: 293 FLQD 296
>gi|119511214|ref|ZP_01630330.1| Substrate-binding region of ABC-type glycine betaine transport
system [Nodularia spumigena CCY9414]
gi|119464092|gb|EAW45013.1| Substrate-binding region of ABC-type glycine betaine transport
system [Nodularia spumigena CCY9414]
Length = 286
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 33/289 (11%), Positives = 82/289 (28%), Gaps = 30/289 (10%)
Query: 9 LFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPV 66
+ + S ++ + A +T+ + + +EE + V
Sbjct: 1 MAVGIASCNFNASTSGAGDIVIASKDFTEQDILGELLAQQIEETTDLTVTRRPRLGGSFV 60
Query: 67 TFRSLKNKGIDIFMGYWYPSLEKFIAP----------------YLEEGSIKLVAENLQGA 110
++ ID ++ Y + + Y ++ +++++
Sbjct: 61 CHNAIIAGQIDAYIEYTGTAFTAILKQQAVNDPKVVHEQLKQAYAKQFNLEVMPSLGFEN 120
Query: 111 KYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
+ + + I++ + AKY + E +
Sbjct: 121 TFAMIIRGEDARRYNIQTLSEAAKYTPQWRGGF--GYEFLEREDGFPGLAKTYGL----- 173
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV 229
R + ++ I R + S L + L ++ +
Sbjct: 174 RFAISPQIMDLGLIYRALIQKQVDMVAGNSTDGQISRLGLVVLKDNQQYF--PPYEAAPI 231
Query: 230 VRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
VR + L+K P + + + K + E+ L+ QD + V R
Sbjct: 232 VRKETLNKYPQLRTAINQLSGKITSDEMRELNNLVEGELQDIKTVVREF 280
>gi|308172162|ref|YP_003918867.1| glycine betaine ABC transporter binding protein [Bacillus
amyloliquefaciens DSM 7]
gi|307605026|emb|CBI41397.1| glycine betaine ABC transporter (binding protein) [Bacillus
amyloliquefaciens DSM 7]
gi|328551973|gb|AEB22465.1| glycine betaine ABC transporter (binding protein) [Bacillus
amyloliquefaciens TA208]
gi|328910240|gb|AEB61836.1| glycine betaine ABC transporter (binding protein) [Bacillus
amyloliquefaciens LL3]
Length = 293
Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats.
Identities = 29/160 (18%), Positives = 65/160 (40%), Gaps = 4/160 (2%)
Query: 137 ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFL 196
++ I GI+PG+ + + + + ++ AS A + +++ P +
Sbjct: 34 QVNKTIIGIDPGSGIMALTDEAVKDYGLKD--WNVVTASSAAMTATLKKSYDRKKPIIVT 91
Query: 197 SWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALEN 256
W PH + S + +L ++ G E ++T+ R+ + + PN ++L K++
Sbjct: 92 GWTPHWMFSRYKLKFLDDPKKTYGTAE-QIHTITRTGFSKEQPNAVKVLSQFKWTQDDMG 150
Query: 257 EMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDG 296
E+M + + ++ H D + W G G
Sbjct: 151 EVMIAV-EEGEKPAKAAADYVKKHKDQVAQWTKGAHKVKG 189
Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 2/103 (1%)
Query: 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDI 78
+ A W A+T + +L + LGY + + + ++ D
Sbjct: 183 GAHKVKGDKINLAYVAWDSEIASTNVVGKVL-QDLGYDVKLTQVEAGPMWTAVATGSADA 241
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ W P+ K A +G + V +L G K L V
Sbjct: 242 SLSAWLPNTHKAYASKY-KGKYEDVGTSLTGVKMGLVVPQYMK 283
>gi|283785194|ref|YP_003365059.1| ABC transporter periplasmic binding protein [Citrobacter rodentium
ICC168]
gi|282948648|emb|CBG88239.1| putative ABC transporter periplasmic binding protein [Citrobacter
rodentium ICC168]
Length = 300
Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats.
Identities = 39/305 (12%), Positives = 91/305 (29%), Gaps = 37/305 (12%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-I 59
+ K L L T + A P+ A G+T+ +AMT + L++ G++
Sbjct: 3 LKKHLLGWLAATLLLSAQVHAA----PIILATKGFTEQHILSAMTVLYLQKK-GFQVQPR 57
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPS---------------LEKFIAPYLEEGSIKLVA 104
+A ++ +++N ID+ Y S + + + +
Sbjct: 58 TNIAAVISRNAMENNQIDVTWEYTGTSLIIFNRINKRMSAQESYDTVKRLDAKKGLVWLK 117
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQD--------IAKYKKELGAKIYGIEPGNEGNQRIL 156
Y A+ + I + + + + +
Sbjct: 118 PADMNNTYAFAMQRKRAEAENITTMSQMVAKIEHIRQTDPDNNWLLGLDLEFAGRSDGMK 177
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ + +L ++ + + R+ L + ++ L +
Sbjct: 178 PLQQTYQMNLDRPQIRQMDPG----LVYNAVRDGFVDAGLVYTTDGRVKGFDLKVLEDDK 233
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGR 274
+V VVR LD P + L + + + + + + + Q + V R
Sbjct: 234 GFF--PSYAVTPVVRKPILDANPGLEEALNTLSDLLNNDVISTLNAKVDIDHQSPEQVAR 291
Query: 275 TMLRT 279
L+
Sbjct: 292 QFLQQ 296
>gi|16764838|ref|NP_460453.1| ABC transporter periplasmic component [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|62180080|ref|YP_216497.1| putative periplasmic component, ABC transport system [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SC-B67]
gi|161614079|ref|YP_001588044.1| hypothetical protein SPAB_01818 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|167550060|ref|ZP_02343818.1| glycine betaine/carnitine/choline-binding protein [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|167994475|ref|ZP_02575566.1| glycine betaine/carnitine/choline-binding protein [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|168235576|ref|ZP_02660634.1| substrate-binding region of ABC-type glycine betaine transport
system [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|168241017|ref|ZP_02665949.1| glycine betaine/carnitine/choline-binding protein [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|168463087|ref|ZP_02697018.1| substrate-binding region of ABC-type glycine betaine transport
system [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|168819253|ref|ZP_02831253.1| glycine betaine/carnitine/choline-binding protein [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|194446205|ref|YP_002040742.1| substrate-binding region of ABC-type glycine betaine transport
system [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|194449370|ref|YP_002045531.1| substrate-binding region of ABC-type glycine betaine transport
system [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|194737639|ref|YP_002114509.1| substrate-binding region of ABC-type glycine betaine transport
system [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|197262284|ref|ZP_03162358.1| substrate-binding region of ABC-type glycine betaine transport
system [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
gi|198246216|ref|YP_002215644.1| substrate-binding region of ABC glycine betaine transport system
[Salmonella enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|200389756|ref|ZP_03216367.1| glycine betaine/carnitine/choline-binding protein [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|204927547|ref|ZP_03218748.1| glycine betaine/carnitine/choline-binding protein [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
gi|205352801|ref|YP_002226602.1| ABC transporter periplasmic binding protein [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|207857006|ref|YP_002243657.1| ABC transporter periplasmic binding protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
gi|224583999|ref|YP_002637797.1| ABC transporter periplasmic binding protein [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
gi|16420013|gb|AAL20412.1| putative periplasmic component [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|62127713|gb|AAX65416.1| putative periplasmic component, ABC transport system [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SC-B67]
gi|161363443|gb|ABX67211.1| hypothetical protein SPAB_01818 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194404868|gb|ACF65090.1| substrate-binding region of ABC-type glycine betaine transport
system [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|194407674|gb|ACF67893.1| substrate-binding region of ABC-type glycine betaine transport
system [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|194713141|gb|ACF92362.1| substrate-binding region of ABC-type glycine betaine transport
system [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|195634217|gb|EDX52569.1| substrate-binding region of ABC-type glycine betaine transport
system [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|197240539|gb|EDY23159.1| substrate-binding region of ABC-type glycine betaine transport
system [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
gi|197291161|gb|EDY30514.1| substrate-binding region of ABC-type glycine betaine transport
system [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|197940732|gb|ACH78065.1| substrate-binding region of ABC-type glycine betaine transport
system [Salmonella enterica subsp. enterica serovar
Dublin str. CT_02021853]
gi|199602201|gb|EDZ00747.1| glycine betaine/carnitine/choline-binding protein [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|204322889|gb|EDZ08085.1| glycine betaine/carnitine/choline-binding protein [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
gi|205272582|emb|CAR37487.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Gallinarum str. 287/91]
gi|205325093|gb|EDZ12932.1| glycine betaine/carnitine/choline-binding protein [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|205327662|gb|EDZ14426.1| glycine betaine/carnitine/choline-binding protein [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|205339194|gb|EDZ25958.1| glycine betaine/carnitine/choline-binding protein [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|205343690|gb|EDZ30454.1| glycine betaine/carnitine/choline-binding protein [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|206708809|emb|CAR33137.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Enteritidis str.
P125109]
gi|224468526|gb|ACN46356.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Paratyphi C strain
RKS4594]
gi|261246694|emb|CBG24504.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Typhimurium str.
D23580]
gi|267993392|gb|ACY88277.1| putative ABC transporter periplasmic component [Salmonella enterica
subsp. enterica serovar Typhimurium str. 14028S]
gi|301158023|emb|CBW17518.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Typhimurium str.
SL1344]
gi|312912476|dbj|BAJ36450.1| putative ABC transporter substrate binding protein [Salmonella
enterica subsp. enterica serovar Typhimurium str.
T000240]
gi|320086025|emb|CBY95799.1| Glycine betaine/carnitine/choline-binding protein
Osmoprotectant-binding protein; Flags: Precursor
[Salmonella enterica subsp. enterica serovar Weltevreden
str. 2007-60-3289-1]
gi|321224111|gb|EFX49174.1| Putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Typhimurium str.
TN061786]
gi|322616111|gb|EFY13027.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
315996572]
gi|322620560|gb|EFY17422.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-1]
gi|322622961|gb|EFY19803.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-3]
gi|322628731|gb|EFY25516.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-4]
gi|322631442|gb|EFY28200.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-1]
gi|322638777|gb|EFY35472.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-2]
gi|322641058|gb|EFY37702.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Montevideo str. 531954]
gi|322646577|gb|EFY43085.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322649057|gb|EFY45498.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
OH_2009072675]
gi|322654573|gb|EFY50894.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322658660|gb|EFY54918.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Montevideo str. 19N]
gi|322665183|gb|EFY61371.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
81038-01]
gi|322667927|gb|EFY64087.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
MD_MDA09249507]
gi|322671661|gb|EFY67782.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Montevideo str. 414877]
gi|322677292|gb|EFY73356.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Montevideo str. 366867]
gi|322680044|gb|EFY76083.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Montevideo str. 413180]
gi|322685526|gb|EFY81522.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Montevideo str. 446600]
gi|322714552|gb|EFZ06123.1| putative ABC transporter periplasmic component [Salmonella enterica
subsp. enterica serovar Choleraesuis str. A50]
gi|323129762|gb|ADX17192.1| putative ABC transporter periplasmic component [Salmonella enterica
subsp. enterica serovar Typhimurium str. 4/74]
gi|323191889|gb|EFZ77136.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
609458-1]
gi|323200043|gb|EFZ85131.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
556150-1]
gi|323203794|gb|EFZ88814.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Montevideo str. 609460]
gi|323205660|gb|EFZ90623.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
507440-20]
gi|323217330|gb|EGA02050.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB101509-0077]
gi|323221926|gb|EGA06318.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB102109-0047]
gi|323223620|gb|EGA07933.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB110209-0055]
gi|323232205|gb|EGA16311.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB111609-0052]
gi|323234376|gb|EGA18463.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009083312]
gi|323237827|gb|EGA21886.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009085258]
gi|323242609|gb|EGA26630.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
315731156]
gi|323249634|gb|EGA33545.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2009159199]
gi|323252857|gb|EGA36692.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008282]
gi|323255979|gb|EGA39719.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008283]
gi|323261005|gb|EGA44601.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008284]
gi|323266691|gb|EGA50178.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008285]
gi|323272244|gb|EGA55655.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008287]
gi|326627870|gb|EGE34213.1| putative ABC transporter periplasmic component [Salmonella enterica
subsp. enterica serovar Gallinarum str. 9]
gi|332988375|gb|AEF07358.1| putative ABC transporter periplasmic component [Salmonella enterica
subsp. enterica serovar Typhimurium str. UK-1]
Length = 300
Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats.
Identities = 38/304 (12%), Positives = 87/304 (28%), Gaps = 37/304 (12%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
K L L T S + A P+ A +T+ +AMT L++ G++ +
Sbjct: 4 KKHLLGWLAATLLFSSQTQAA----PLVLATKSFTEQHILSAMTVQYLQKK-GFQVQPQT 58
Query: 62 LAVPVT-FRSLKNKGIDIFMGYWYPS---------------LEKFIAPYLEEGSIKLVAE 105
V ++ NK IDI Y S + + + +
Sbjct: 59 NIAAVISRNAMVNKQIDITWEYTGTSLIIFNRIDKRMSPQETYDTVKRLDAKLGLVWLKP 118
Query: 106 NLQGAKYMLAVNDVGFALGIKSY--------QDIAKYKKELGAKIYGIEPGNEGNQRILD 157
Y A+ + + + + + + + +
Sbjct: 119 ADMNNTYAFAMQRKRAESENITTISQMVAKIEQVRQNDPDHNWMLGLDLEFAGRSDGMKP 178
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
+ + L ++ + + R+ + L + ++ L +
Sbjct: 179 LQQAYQMQLDRPQIRQMDPG----LVYNAVRDGLVDAGLVYTTDGRVKGFDLKVLEDDKG 234
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRT 275
+V VVR + L+ P + L + + + + + + + Q V
Sbjct: 235 FF--PSYAVTPVVRKEVLEANPGLDDALNTLSGLLNNDVISTLNAQVDIEHRTPQQVAHQ 292
Query: 276 MLRT 279
L+
Sbjct: 293 FLQD 296
>gi|262394382|ref|YP_003286236.1| L-proline glycine betaine binding ABC transporter protein
proX/osmotic adaptation [Vibrio sp. Ex25]
gi|262337976|gb|ACY51771.1| L-proline glycine betaine binding ABC transporter protein
proX/osmotic adaptation [Vibrio sp. Ex25]
Length = 312
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 36/307 (11%), Positives = 87/307 (28%), Gaps = 36/307 (11%)
Query: 17 SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRSLKNKG 75
+ V+ + + T + + LEE LGY K + V + S+
Sbjct: 1 MASELPGEGVTVQPVQSTVAEETFQTLIVNRALEE-LGYDVKPTKEVDYNVGYTSIAKGD 59
Query: 76 IDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQ------ 129
W+P + + + GA ++ +
Sbjct: 60 ATFLAVGWFPLHADKYTMSGGDDKFFRKGQYVSGAAQGYLIDKKTAEKYGITNIGQLKDP 119
Query: 130 ---DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRD 186
+ + A + G PG + ++ K + + A +
Sbjct: 120 KLAKLFDANGDGKADLTGCNPGWGCEMVVEHQLDAFKLRDT-VTHNQGNYAAIIADTISR 178
Query: 187 QRNNIPAVFLSWEPHPINS---------------------DLNIHYLPGGEEISGFGEAS 225
+ P ++ +W P+ ++ +I + GF S
Sbjct: 179 YKKGDPILYYTWTPYWVSGVLVPGKDVVWLEVPFSSLPGERKDIDTTLENGKNYGFEMNS 238
Query: 226 VYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV---GRTMLRTHPD 282
+ V ++ +K P ++L + IK ++ + ++ K + ++ +
Sbjct: 239 MRIVANKEFTEKNPAAAKLFEIIKLNINDVSAQNMMMSQGKNSSADIESHVNGWIKANQK 298
Query: 283 LLKNWLI 289
W+
Sbjct: 299 KFDAWVD 305
>gi|208434732|ref|YP_002266398.1| osmo protection protein [Helicobacter pylori G27]
gi|208432661|gb|ACI27532.1| osmo protection protein [Helicobacter pylori G27]
Length = 553
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 34/279 (12%), Positives = 86/279 (30%), Gaps = 33/279 (11%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL---AVPVTFRSLKNKGID 77
+A P+ A ++ + S++LE+ +L D
Sbjct: 283 NAIEEKPLVVATKPSSEQYILGEILSLLLEKH-HIPIKRAFGIGGGTMNIHPALIRGDFD 341
Query: 78 IFMGYWYPSLEKFIAP--------------YLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
++M Y + + Y +E ++ V Y LA++
Sbjct: 342 LYMEYTGTAWVNTLKNPLTQKVDFETIKKRYEKEFNLLWVGLLGFNNTYSLAISKEDAQK 401
Query: 124 G-IKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
I+++ D+A + + +G E E ++ +F + +
Sbjct: 402 YAIETFSDLALHSQNFD---FGAEFDFFEREDAFKGLMKAYRF------HFRSLHEMDIN 452
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNI 241
+ ++ + +L++ L + V+R + + K P
Sbjct: 453 LRYKSFESHKINALDVFTTDAQIKELDLKVLKDDKGFF--PNYQAGIVIRKEIIKKYPEA 510
Query: 242 SRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
++L+ + K + ++ + K+ + V + L
Sbjct: 511 LKILEKLDSKINDETMQDLNYQVEVLKKSPKIVAKDFLE 549
>gi|86147802|ref|ZP_01066109.1| glycine betaine/L-proline-binding protein [Vibrio sp. MED222]
gi|218709174|ref|YP_002416795.1| glycine betaine transporter periplasmic subunit [Vibrio splendidus
LGP32]
gi|85834440|gb|EAQ52591.1| glycine betaine/L-proline-binding protein [Vibrio sp. MED222]
gi|218322193|emb|CAV18307.1| Glycine betaine-binding periplasmic protein precursor [Vibrio
splendidus LGP32]
Length = 335
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 40/324 (12%), Positives = 94/324 (29%), Gaps = 39/324 (12%)
Query: 2 YKILAVCLFLTTFSIS---YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
LAV + T + A V+ + + T + + LEE LGY
Sbjct: 6 KSKLAVSIVSTLAVSTNVWAASLPGEGVSVQPVQSSVAEETFQTLIVNRALEE-LGYDVK 64
Query: 59 -IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+ + V + S+ W+P + + + GA ++
Sbjct: 65 STQEVDYNVAYTSIAKGDATFLTVGWFPLHADKYKMAGGDDKFYREGQYVSGAAQGYLID 124
Query: 118 DVGFALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
+ + + A + G PG I I+ K
Sbjct: 125 KKTAEKYNITNIGQLTDPKIAKLFDADGDGKADLTGCNPGWGCEMVIEHQISAFKLDDT- 183
Query: 169 FRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP----INSDLNIHYLPGGEEISGFGEA 224
+ + A + + ++ +W P+ + + ++ +L A
Sbjct: 184 VTHNQGNYAAIIADTISRYQKGESVLYYTWTPYWVSGVLVPNEDVVWLEVPFSSLPGDRA 243
Query: 225 SVYT-----------------VVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNK- 266
+V T + ++ P+ ++L + IK ++ + ++ K
Sbjct: 244 NVDTTLSNGKNYGFEMNSMRIIANKEFAKNNPSAAKLFEIIKLNINDVSAQNMMMSKGKN 303
Query: 267 --QDRQFVGRTMLRTHPDLLKNWL 288
D + ++ + + W+
Sbjct: 304 SSADIEAHVNGWIKANRNTFDAWI 327
>gi|312961037|ref|ZP_07775542.1| glycine betaine/L-proline ABC transporter [Pseudomonas fluorescens
WH6]
gi|311284695|gb|EFQ63271.1| glycine betaine/L-proline ABC transporter [Pseudomonas fluorescens
WH6]
Length = 288
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 32/277 (11%), Positives = 76/277 (27%), Gaps = 34/277 (12%)
Query: 51 EILGYKTNI-KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQG 109
+ LGY K ++ N D + W + F + ++ + + G
Sbjct: 5 KELGYDVETPKETEYSTMMVAISNGDADFSVHLWEELHKSFYQKAGGDETMVKTGDIMPG 64
Query: 110 AKYMLAVNDVGFALGIKS---------YQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN 160
V+ + + + A + G PG I +
Sbjct: 65 VLQGYMVDKKTADEYHITSIEDLKKPEIAKLFDSNGDGKADLTGCNPGWGCELVIAHHMK 124
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP----INSDLNIHYLPGGE 216
+ S A + + P ++ +W P + ++ +L
Sbjct: 125 AYGLDKTVTN-NQGSYFALMADTIARYKQGKPVLYYTWVPQWISGVLVEGKDVVWLTVPR 183
Query: 217 EISGFGEASVYT----------------VVRSDYLDKCPNISRLLKNIKFSVALENEMMK 260
G+ + T V+ ++ +K P + L ++ + E+
Sbjct: 184 TDLPGGKNDINTTFNGKNLGFAVDSVKAVINKEFAEKNPAAVKFLSEMQITTDDESAQNL 243
Query: 261 LILNNKQDRQFV---GRTMLRTHPDLLKNWLIGVTTF 294
+ N ++ + + + H +WL
Sbjct: 244 KMHNGEKSAADITRHAKEWIAAHRAKYDSWLADARAA 280
>gi|328958747|ref|YP_004376133.1| glycine betaine-binding protein [Carnobacterium sp. 17-4]
gi|328675071|gb|AEB31117.1| glycine betaine-binding protein [Carnobacterium sp. 17-4]
Length = 303
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 36/178 (20%), Positives = 75/178 (42%), Gaps = 4/178 (2%)
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+++ + GIEPG + + + +L+G+ L E+S
Sbjct: 27 ADGKETENSTNETVSEQVNYTVTGIEPGAGITEMAHQTLEGYE-NLEGWELEESSTGGML 85
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ + + N P +F W PH + S+ ++ YL E+ G E+ ++T+ R D+ + PN
Sbjct: 86 TLLDQAISNEEPIIFTGWAPHWMFSEYDLKYLEDPEKTMGDIES-IHTIARLDFEAEMPN 144
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
++L ++ V +M ++ + + + D + WL G DG++
Sbjct: 145 AYKILDAFQWEVEDMEAVMFEAQDS--SFEESAANWIEANKDKVDMWLEGTEKVDGKE 200
Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 2/97 (2%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYW 83
+ T W A++ + +LE+ GY+ + + V F ++ N D+ + W
Sbjct: 197 DGKEIELVSTPWDTERASSLVVKAVLEQQ-GYEVTVTDVDPAVLFEAIANGSADVSLAPW 255
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
P+ ++ I + ENL GAK L V
Sbjct: 256 LPTTHASFYEKHQDS-IVDLGENLTGAKNGLVVPSYM 291
>gi|298736521|ref|YP_003729047.1| osmoprotection protein ProWX [Helicobacter pylori B8]
gi|298355711|emb|CBI66583.1| Osmoprotection protein (ProWX) [Helicobacter pylori B8]
Length = 553
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 32/278 (11%), Positives = 79/278 (28%), Gaps = 31/278 (11%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL---AVPVTFRSLKNKGID 77
A P+ A ++ + S++LE+ +L D
Sbjct: 283 SAIEEKPLVVATKPSSEQYILGEILSLLLEKH-HIPIKRAFGIGGGTMNIHPALIRGDFD 341
Query: 78 IFMGYWYPSLEKFIAP--------------YLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+++ Y + + Y +E ++ V Y LA++
Sbjct: 342 LYVEYTGTAWVNTLKNPLTQKVDFETIKKRYEKEFNLLWVGLLGFNNTYSLAISKEDAQK 401
Query: 124 GIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ + + +G E E +I +F + +
Sbjct: 402 Y--AIETFSDLAFHSPNFDFGAEFDFFEREDAFKGLIKAYRF------HFRSLHEMDINL 453
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ ++ + +L++ L + V+R + + K P +
Sbjct: 454 RYKSFESHKINALDVFTTDAQIKELDLKVLKDDKGFF--PNYQAGIVIRKEIVKKYPEVL 511
Query: 243 RLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
+L+ + K S ++ + K+ + V + L
Sbjct: 512 EILEKLDSKISDEKMQDLNYQVEALKKSPKIVAKDFLE 549
>gi|15645437|ref|NP_207611.1| osmoprotection protein (proWX) [Helicobacter pylori 26695]
gi|2313949|gb|AAD07866.1| osmoprotection protein (proWX) [Helicobacter pylori 26695]
Length = 553
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 32/278 (11%), Positives = 79/278 (28%), Gaps = 31/278 (11%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL---AVPVTFRSLKNKGID 77
+A P+ A ++ + S++LE+ +L D
Sbjct: 283 NAIEEKPLVVATKPSSEQYILGEILSLLLEKH-HIPIKRAFGIGGGTMNIHPALIRGDFD 341
Query: 78 IFMGYWYPSLEKFIAP--------------YLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+++ Y + + Y +E ++ V Y LA++
Sbjct: 342 LYVEYTGTAWVNTLKNPLTQKVDFETIKKRYEKEFNLLWVGLLGFNNTYSLAISKEDAQK 401
Query: 124 GIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ + + +G E E ++ +F + +
Sbjct: 402 Y--AIETFSDLAFHSPNFDFGAEFDFFEREDAFKGLVKAYRF------HFRSLHEMDINL 453
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ ++ + +L++ L + V+R + + K P
Sbjct: 454 RYKSFESHKINALDVFTTDAQIKELDLKVLKDDKGFF--PNYQAGIVIRKEIVKKYPEAL 511
Query: 243 RLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
+L+ + K S ++ + K+ Q V + L
Sbjct: 512 EILEKLDSKISDEKMQDLNYQVEVLKKSPQIVAKDFLE 549
>gi|309791313|ref|ZP_07685836.1| substrate-binding region of ABC-type glycine betaine transport
system [Oscillochloris trichoides DG6]
gi|308226623|gb|EFO80328.1| substrate-binding region of ABC-type glycine betaine transport
system [Oscillochloris trichoides DG6]
Length = 337
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 38/285 (13%), Positives = 83/285 (29%), Gaps = 27/285 (9%)
Query: 14 FSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSL 71
+ + S +R +T+ M +++LEE G+ K A + +L
Sbjct: 52 TAAAEPTAVPSGATIRIGSKHFTEAILVAEMYALMLEEN-GFTVERKFSLGATAIAHEAL 110
Query: 72 KNKGIDIFMGYWYPSLEKFIAP----------------YLEEGSIKLVAENLQGAKYMLA 115
ID++ Y L+ + Y E+ + + + + A
Sbjct: 111 VGGDIDLYPEYTSTGLQVVLKQPALPDEAAIMAALRKGYEEQFQVTWLNPSPFNNTNVFA 170
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
+ + G G P + ++ F K
Sbjct: 171 MTKAKAEE--LGVTTFSDLVPLSGELRLGGPPEFPEREDNKAILAMYGFDPKFSGDNYVQ 228
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYL 235
+ S V +++ + L + L + + + V+R D L
Sbjct: 229 LDSG-SLRYEALTRGDVDVVVAFGTDGQIAGLGLTVLQDDKNA--YPIYQIAPVIRQDAL 285
Query: 236 DKCPNISRLLKNIK--FSVALENEMMKLILN-NKQDRQFVGRTML 277
+ P I+ +L + + + + + K++ V R L
Sbjct: 286 NANPQIAEILNTMAPVLTSEIMAGLNWQVDGPEKKEISVVAREFL 330
>gi|298695714|gb|ADI98936.1| betaine-carnitine-choline ABC transporter [Staphylococcus aureus
subsp. aureus ED133]
Length = 313
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 27/289 (9%), Positives = 72/289 (24%), Gaps = 27/289 (9%)
Query: 13 TFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL----LAVPVTF 68
S+ + V+ ++ + M +++E K L + +
Sbjct: 20 GCSLPGLGSKSTKNDVKITALSTSESQIISHMLRLLIEHDTHGKIKPTLVNNLGSSTIQH 79
Query: 69 RSLKNKGIDIF-MGYWYPSLEKFIAPYL--------------EEGSIKLVAENLQGAKYM 113
+L N +I + Y L + + + G
Sbjct: 80 NALINGDANISGVRYNGTDLTGVLKEAPIKDPKKAMIATQQGFKKKFDQTFFDSYGFANT 139
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
A + ++ K G++ + ++ +
Sbjct: 140 YAFMVTKETAKKYHLETVSDLAKHSKDLRLGMDSSWMNRKGDGYEGFKKEYGFDFGTVRP 199
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+ + V L + + ++ L + F + V ++
Sbjct: 200 ----MQIGLVYDALNSEKLDVALGYSTDGRIAAYDLKVLKD--DKQFFPPYAASAVATNE 253
Query: 234 YLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
L + P + + + K S + + ++ V L+ H
Sbjct: 254 LLRQHPELKTTINKLTGKISTSEMQRLNYEADGKGKEPAVVAEEFLKKH 302
>gi|15611824|ref|NP_223475.1| putative osmoprotection binding protein [Helicobacter pylori J99]
gi|4155319|gb|AAD06334.1| putative osmoprotection binding protein [Helicobacter pylori J99]
Length = 553
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 33/278 (11%), Positives = 80/278 (28%), Gaps = 31/278 (11%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL---AVPVTFRSLKNKGID 77
A P+ A ++ + S++LE+ +L D
Sbjct: 283 SAIEEKPLVVATKPSSEQYILGEILSLLLEKH-HIPIKRAFGIGGGTMNIHPALIRGDFD 341
Query: 78 IFMGYWYPSLEKFIAP--------------YLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+++ Y + + Y +E ++ V Y LA++
Sbjct: 342 LYVEYTGTAWVNTLKNPLTQKVDFETIKKRYEKEFNLLWVGLLGFNNTYSLAISKEDAQK 401
Query: 124 GIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ + + +G E E +I +F + +
Sbjct: 402 Y--AIETFSDLAFHSPNFDFGAEFDFFEREDAFKGLIKAYRF------HFRSLHEMDINL 453
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ ++ + +L++ L + V+R + + K P +
Sbjct: 454 RYKSFESHKINALDVFTTDAQIKELDLKVLKDDKGFF--PNYQAGIVIRKETIKKYPEVL 511
Query: 243 RLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
++L+ + K S ++ + K+ Q V + L
Sbjct: 512 KILEKLDSKISDEKMQDLNYQVEALKKSPQIVAKDFLE 549
>gi|332522251|ref|ZP_08398503.1| glycine betaine/carnitine/choline-binding protein [Streptococcus
porcinus str. Jelinkova 176]
gi|332313515|gb|EGJ26500.1| glycine betaine/carnitine/choline-binding protein [Streptococcus
porcinus str. Jelinkova 176]
Length = 308
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 38/304 (12%), Positives = 82/304 (26%), Gaps = 30/304 (9%)
Query: 1 MYKILAVCLFLTTFSISYARD-----ADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M K L + L + I+ ++ A T+ + + + ++ LGY
Sbjct: 1 MKKKLYISLSILLTLIACFFAYHHFFKKQGETIKIAAQSTTESSIMANIIAELVNHELGY 60
Query: 56 KTNIKL--LAVPVTFRSLKNKGIDI---------------FMGYWYPSLEKFIAPYLEEG 98
+T I + VT ++ DI P I +
Sbjct: 61 QTVIVPNLGSSNVTHQAQLRGDADISATRYTGTDITGSLRMATVKEPQKAAKIVKKEFKK 120
Query: 99 SIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
G A + I+ K + GI+ +
Sbjct: 121 RFNQTWFPSYGFSDTYAFMVTNDYAKQNHLETISDMKAIKSSAKVGIDSTWMNRKGDGYP 180
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ + L + ++ L + ++ L +
Sbjct: 181 DFSKTYGFTFDNLYP----MQIGLVYDAVSSDKMQAVLGYSTDGRIQSYDLKILKD--DK 234
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F VV + L K P + ++L + + S+ + + + + V +
Sbjct: 235 QFFPPYECSMVVSNSLLKKYPKLKKVLHRLDGQISLETMQTLNYKVDDRLLEPAVVAKDF 294
Query: 277 LRTH 280
L++H
Sbjct: 295 LKSH 298
>gi|260558421|ref|ZP_05830617.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecium C68]
gi|294618446|ref|ZP_06698016.1| glycine betaine/carnitine/choline-binding protein [Enterococcus
faecium E1679]
gi|260075595|gb|EEW63901.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecium C68]
gi|291595287|gb|EFF26610.1| glycine betaine/carnitine/choline-binding protein [Enterococcus
faecium E1679]
Length = 305
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 30/308 (9%), Positives = 74/308 (24%), Gaps = 37/308 (12%)
Query: 1 MYKIL------AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
M +IL L L + S + ++ ++ + ++E
Sbjct: 1 MKRILKMTMVLFSLLILASCSFPGLASNTDEDTISITGGITSEAQILASLVAGMVEHYTD 60
Query: 55 YKTNIKL--LAVPVTFRSLKNKGIDIFMGYWYPS-----------------LEKFIAPYL 95
T I + +++ N I + + +
Sbjct: 61 KNTAIINNLATTTINHQAMMNGDASISAARYTGTDLTTTLNLPPEKDPKKAFATVKDEFE 120
Query: 96 EEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRI 155
+ Y+ V S ++ K + G++ +
Sbjct: 121 KRYDQTWFPSYGFENTYVFLVRKDTAQKYHLS--KVSDLKNVADELVAGVDTSWINRKG- 177
Query: 156 LDMINNNKFSLKGFRLIEASE-LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPG 214
+ + + S + + L + + ++ L
Sbjct: 178 ----DGYDGFQETYGFSFNSILPMQIGLVYDAVEAGKMDIVLGYSTDGRIASYDLVMLED 233
Query: 215 GEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFV 272
+ VV + L P++ L + S E+ NN + V
Sbjct: 234 DRQFF--PPYDAAPVVNNKILADTPHLKEALNKLGHTISTEKMQELNYEADNNLVEPSVV 291
Query: 273 GRTMLRTH 280
+ L+ +
Sbjct: 292 AQRFLQEN 299
>gi|87302596|ref|ZP_01085413.1| Substrate-binding region of ABC-type glycine betaine transport
system [Synechococcus sp. WH 5701]
gi|87282940|gb|EAQ74897.1| Substrate-binding region of ABC-type glycine betaine transport
system [Synechococcus sp. WH 5701]
Length = 525
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 27/296 (9%), Positives = 74/296 (25%), Gaps = 28/296 (9%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
++A+ L+ + + + +T+ + + +E + +
Sbjct: 231 LIALVAALSLGLGPFTVGPATAGRITVGSKSFTEQIILGELLAQQIERHSSLQVERQFSL 290
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP----------------YLEEGSIKLVAE 105
+ ++++ I ++ Y + + Y + +++
Sbjct: 291 GGTAICQEAVRSGRIAAYVEYSGTAWMTILQQPPLREATTMLERTRSLYRDRFDLEVFPS 350
Query: 106 NLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFS 165
+ + V + A +G E + ++
Sbjct: 351 LGFENTFAVLVRQETARRLKLTTISEAAVHTPGWRAGFGYE-FLNRADGYTGLASSYGL- 408
Query: 166 LKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEAS 225
+ R + + + + L + L + F
Sbjct: 409 ----SFATRPVSMDLGLVYRALADGQVDLIAGDSTNGLIPTLRLKALED--DRHYFPPYQ 462
Query: 226 VYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
VV L + P I R +K + K S + + N + V L
Sbjct: 463 AVPVVNGAILRRHPEIGRAIKGLQGKLSAQTMQRLNAQVDENGEAVGQVVNRFLDD 518
>gi|161503355|ref|YP_001570467.1| hypothetical protein SARI_01428 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160864702|gb|ABX21325.1| hypothetical protein SARI_01428 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 300
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 38/304 (12%), Positives = 87/304 (28%), Gaps = 37/304 (12%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
K L L T S + A P+ A +T+ +AMT L++ G++ +
Sbjct: 4 KKHLLGWLAATLLFSSQTQAA----PLVLATKSFTEQHILSAMTVQYLQKK-GFQVQPQT 58
Query: 62 LAVPVT-FRSLKNKGIDIFMGYWYPS---------------LEKFIAPYLEEGSIKLVAE 105
V ++ NK IDI Y S + + + +
Sbjct: 59 NIAAVISRNAMVNKQIDITWEYTGTSLIIFNRIDKRMNPQETYDTVKRLDAKLGLVWLKP 118
Query: 106 NLQGAKYMLAVNDVGFALGIKSY--------QDIAKYKKELGAKIYGIEPGNEGNQRILD 157
Y A+ + + + + + + + +
Sbjct: 119 ADMNNTYAFAMQRKRAEAENITTISQMVAKIEQVRQNDPDHNWMLGLDLEFAGRSDGMKP 178
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
+ + L ++ + + R+ + L + ++ L +
Sbjct: 179 LQQAYQMQLDRPQIRQMDPG----LVYNAVRDGLVDAGLVYTTDGRVKGFDLKVLEDDKG 234
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRT 275
+V VVR + L P + L + + + + + + + + Q V
Sbjct: 235 FF--PSYAVTPVVRKEVLKANPGLDDALNTLSGLLNNDVISTLNAQVDIDHRTPQQVAHQ 292
Query: 276 MLRT 279
L+
Sbjct: 293 FLQD 296
>gi|227890328|ref|ZP_04008133.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Lactobacillus johnsonii ATCC 33200]
gi|227849142|gb|EEJ59228.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Lactobacillus johnsonii ATCC 33200]
Length = 515
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 35/307 (11%), Positives = 82/307 (26%), Gaps = 39/307 (12%)
Query: 4 ILAVCLFLTTFSI-------SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEI-LGY 55
++A+ L + S + A++ + A ++ A M ++E+
Sbjct: 215 LIALALVIWGGSSLYNHYANTSKNVAETKQTITIAGKMGSEPAILINMYKDLIEKNDPNT 274
Query: 56 KT--NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIA------------------PYL 95
K F++L+ IDI+ + L+ +
Sbjct: 275 KVVLKPNFGGTTFLFKALQTDKIDIYPEFTGTVLQTLVKTGKKTGNDPNQVYVEARSDLK 334
Query: 96 EEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRI 155
++ ++ + Y LA + + +
Sbjct: 335 KQFDMEYLKPMAYQNGYALATTQKFAKDNHLTKMSDLNRVNKKVHAAF-DPDFTSLKDGY 393
Query: 156 LDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG 215
+ K + E+S NN V + N+ L
Sbjct: 394 PGLKKIYKLDFASIKSTESSIR------YHAIANNQANVVDGYTTDAEIKKYNLVMLDDD 447
Query: 216 EEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVG 273
++ ++R+ + ++ P I + L + K + +M + + V
Sbjct: 448 KKFF--PPYQGAPLMRTKFAERNPQIVKALNKLAGKITTEEMQQMNYQVNVKHEKPAKVA 505
Query: 274 RTMLRTH 280
L H
Sbjct: 506 HDYLVKH 512
>gi|207092069|ref|ZP_03239856.1| osmoprotection protein [Helicobacter pylori HPKX_438_AG0C1]
Length = 391
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 35/279 (12%), Positives = 89/279 (31%), Gaps = 33/279 (11%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL---AVPVTFRSLKNKGID 77
+A P+ A ++ + S++LE+ +L D
Sbjct: 121 NAIEEKPLVVATKPSSEQYILGEILSLLLEKH-HIPIKRAFGIGGGTMNIHPALIRGDFD 179
Query: 78 IFMGYWYPSLEKFIAP--------------YLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+++ Y + + Y +E ++ V Y LA++
Sbjct: 180 LYVEYTGTAWVNTLKNPLTQKVDFETIKKRYEKEFNLLWVGLLGFNNTYSLAISKKDAQK 239
Query: 124 G-IKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
I+++ D+A + + +G E E + ++ +F + +
Sbjct: 240 YAIETFSDLALHSQNFD---FGAEFDFFEREDALKGLMKAYRF------HFRSLHEMDIN 290
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNI 241
+ ++ + +L++ L + V+R + + K P
Sbjct: 291 LRYKSFESHKINALDVFTTDAQIKELDLKVLKDDKGFF--PNYQAGIVMRKEIIKKYPEA 348
Query: 242 SRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
++L+ + KFS + ++ + K++ Q + L
Sbjct: 349 LKILEKLDSKFSDEVMQDLNYQVEVLKKNPQIAAKEFLE 387
>gi|318081931|ref|ZP_07989240.1| putative glycine betaine ABC transporter substrate-binding and
permease component [Streptomyces sp. SA3_actF]
Length = 204
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 36/207 (17%), Positives = 81/207 (39%), Gaps = 6/207 (2%)
Query: 81 GYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGA 140
W P+ + ++ + +AV G+KS D+ + E
Sbjct: 1 DSWLPTTHAQYWKKYGD-RLEDMGSWYGPTSLEIAVPSYV--KGVKSTADLKGKESEFKN 57
Query: 141 KIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEP 200
+I GIEP + D + + L +++++ S A ++++R P W P
Sbjct: 58 RIVGIEPSAGEMGLLKDKV-VKDYGLSKYKVVDGSTPAMLTELKRAYAKKEPIAVTLWSP 116
Query: 201 HPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMK 260
H ++ L + G G+ V+T+ R + P ++ LK+ K + + +
Sbjct: 117 HWAYDKYDLTKLSDPKGSWGKGD-EVHTLARKGFSKDFPEAAQWLKDFKLNEKQLSSLEG 175
Query: 261 LILNNKQ-DRQFVGRTMLRTHPDLLKN 286
I + + +Q ++ ++ +P ++
Sbjct: 176 AIQDAGKGKQQEAVKSWIKDNPGIVDK 202
>gi|227530015|ref|ZP_03960064.1| substrate-binding protein of glycine betaine ABC superfamily ATP
binding cassette transporter [Lactobacillus vaginalis
ATCC 49540]
gi|227350047|gb|EEJ40338.1| substrate-binding protein of glycine betaine ABC superfamily ATP
binding cassette transporter [Lactobacillus vaginalis
ATCC 49540]
Length = 301
Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats.
Identities = 34/304 (11%), Positives = 89/304 (29%), Gaps = 34/304 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDA----DSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
+ K++ L + + S P+ +++ + + ++ LE GYK
Sbjct: 5 LRKLITRLALLGIMILVGSSIPTTISASSKPIIVGSKSFSESKTVSEIYALALEHA-GYK 63
Query: 57 TNIKLL-AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPY----------------LEEGS 99
K + V FR++K ID++ Y +E ++ +++
Sbjct: 64 VVRKPNISNSVVFRAVKTGQIDVYPEYTGTIVEAYLKKSANGKSASQMASLAQNGVKKDG 123
Query: 100 IKLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ + + + IK+ D+ K + ++ + M
Sbjct: 124 LVTFNYAPGDNRQGIGMRTSVAKKYNIKTLSDLQK--NASHIRFVSQGEFDKRADALPGM 181
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
++ + S + N + L + +
Sbjct: 182 NKKYG-----KYNFKSHKDYDDSLKYKIMSQNKGDAAPVSTTDGQLATSKFTLLKDDKGL 236
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
+ ++ +V P + + L + K + + K + + Q+ + V +
Sbjct: 237 --WSPYNLVPLVNKKAAKSHPKMEKALNQVDAKLTTKQLTSLNKKVDVDGQNYKTVAKNW 294
Query: 277 LRTH 280
H
Sbjct: 295 YNEH 298
>gi|325567165|ref|ZP_08143832.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Enterococcus casseliflavus
ATCC 12755]
gi|325158598|gb|EGC70744.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Enterococcus casseliflavus
ATCC 12755]
Length = 306
Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats.
Identities = 29/308 (9%), Positives = 72/308 (23%), Gaps = 36/308 (11%)
Query: 1 MYKILAVCLF-------LTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL 53
M K + L L+ S V ++ A+ + ++E
Sbjct: 1 MKKTSKLALLFSLSVALLSGCSFPGLASTSDENTVAITGGITSEAQILGAVVAGMVEHYT 60
Query: 54 GYKTNIKL--LAVPVTFRSLKNKGIDIFMGYWYP-----------------SLEKFIAPY 94
T + + +++ N I + + +K + +
Sbjct: 61 DKNTTVINNLATTTINHQAMMNGDASISAARYTGTDLTTTLGLEPESDPQAAFDKVKSEF 120
Query: 95 LEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQR 154
+ Y+ V + ++ K + G++
Sbjct: 121 EKRYQQTWFPSYGFDNTYVFLVRKDTAEKY--GLEKVSDLKDVADQLVAGVDTAWITRVG 178
Query: 155 ILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPG 214
+ ++ + N + L + ++ L
Sbjct: 179 DAYDGFQEAYGFSFQNILP----MQIGLVYDAVDNGKMDIVLGYSTDGRIGSYDLVMLED 234
Query: 215 GEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFV 272
+V L++ P I L + K E+ + N+ + V
Sbjct: 235 DLNFF--PPYDAAPIVDDKLLEETPEIGDALNKLAGKIDTEKMQELNYQVDNDLLEPTVV 292
Query: 273 GRTMLRTH 280
L +
Sbjct: 293 AERFLEEN 300
>gi|307637509|gb|ADN79959.1| Osmoprotection protein [Helicobacter pylori 908]
gi|325996098|gb|ADZ51503.1| Osmoprotection protein [Helicobacter pylori 2018]
gi|325997694|gb|ADZ49902.1| Osmoprotection protein [Helicobacter pylori 2017]
Length = 522
Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats.
Identities = 32/278 (11%), Positives = 80/278 (28%), Gaps = 31/278 (11%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL---AVPVTFRSLKNKGID 77
+A P+ A ++ + S++LE+ +L D
Sbjct: 252 NAIEEKPLVVATKPSSEQYILGEILSLLLEKH-HIPIKRAFGIGGGTMNIHPALIRGDFD 310
Query: 78 IFMGYWYPSLEKFIAP--------------YLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+++ Y + + Y +E ++ V Y LA++
Sbjct: 311 LYVEYTGTAWVNTLKNPLTQKVDFETIKRRYEKEFNLLWVGLLGFNNTYSLAISKKDAQK 370
Query: 124 GIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ + + +G E E +I +F + +
Sbjct: 371 Y--AIETFSDLAFHSPNFDFGAEFDFFEREDAFKGLIKAYRF------HFRSLHEMDINL 422
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ ++ + +L++ L + V+R + + K P +
Sbjct: 423 RYKSFESHKINALDVFTTDAQIKELDLKVLKDDKGFF--PNYQAGIVIRKEIVKKYPEVL 480
Query: 243 RLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
+L+ + K S ++ + K+ + V + L
Sbjct: 481 EILEKLDSKISDEKMQDLNYQVEALKKSPKIVAKDFLE 518
>gi|317014227|gb|ADU81663.1| putative osmoprotection binding protein [Helicobacter pylori
Gambia94/24]
Length = 553
Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats.
Identities = 33/279 (11%), Positives = 84/279 (30%), Gaps = 33/279 (11%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL---AVPVTFRSLKNKGID 77
A P+ A ++ + S++LE+ +L D
Sbjct: 283 SATEEKPLVVATKPSSEQYILGEILSLLLEKH-HIPIKRAFGIGGGTMNIHPALIRGDFD 341
Query: 78 IFMGYWYPSLEKFIAP--------------YLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+++ Y + + Y +E ++ V Y LA++
Sbjct: 342 LYVEYTGTAWVNTLKNPLTQKVDFETIKKRYEKEFNLLWVGLLGFNNTYSLAISKEDAQK 401
Query: 124 G-IKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
I+++ D+A + +G E E ++ +F + +
Sbjct: 402 YAIETFSDLALHSPNFD---FGAEFDFFEREDAFKGLVKAYRF------HFRSLHEMDIN 452
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNI 241
+ ++ + +L++ L + ++R + + K P
Sbjct: 453 LRYKSFESHKINALDVFTTDAQIKELDLKVLKDDKGFF--PNYQAGIIIRKETIKKYPEA 510
Query: 242 SRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
++L+ + K S ++ + K+ + V + L
Sbjct: 511 LKILEKLDSKISDEKMQDLNYQVEALKKSPKIVAKDFLE 549
>gi|294142686|ref|YP_003558664.1| glycine betaine ABC transporter substrate-binding protein
[Shewanella violacea DSS12]
gi|293329155|dbj|BAJ03886.1| glycine betaine ABC transporter, substrate-binding protein
[Shewanella violacea DSS12]
Length = 313
Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats.
Identities = 32/301 (10%), Positives = 73/301 (24%), Gaps = 22/301 (7%)
Query: 8 CLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVT 67
L L ++ S V + W+ T + +++ G + + A
Sbjct: 7 ILCLLGAVLASISMGVSAKVVLLLELDWSSQKVLTHVVGELMQSK-GIEVDYVSFAADGQ 65
Query: 68 FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF--ALGI 125
+ L D+ + W S+ ++ G I + + D G+
Sbjct: 66 WYQLVYGHADVQIEVWQGSMAAQFDKLVKNGKIIDGGTHQALTREGWWYPDYVEALCPGL 125
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
+ + G D L + + R
Sbjct: 126 PDWTALKACSALFSDDEESQGIYISGPWVKPDRARIRALGLDFRVREIPTGDELWQVFVR 185
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGE-------------------EISGFGEASV 226
V +W P+ + + ++ E + + +
Sbjct: 186 LFEKKKVFVIFNWTPNWVETLYKGKFVEFPEYSEACEFEPAWGVNKKYLWDCGNPKDGWL 245
Query: 227 YTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKN 286
K ++++ S LI + + + L H + L+
Sbjct: 246 KKATSKYLAGKSLCALDIVRSFSLSNQEIALAAALIDIDHLSVEQAAKQWLDVHSERLEQ 305
Query: 287 W 287
W
Sbjct: 306 W 306
>gi|118471750|ref|YP_887243.1| permease binding-protein component [Mycobacterium smegmatis str.
MC2 155]
gi|118173037|gb|ABK73933.1| permease binding-protein component [Mycobacterium smegmatis str.
MC2 155]
Length = 317
Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats.
Identities = 26/274 (9%), Positives = 62/274 (22%), Gaps = 26/274 (9%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPVTFRSLKNKGIDIFMG 81
P+ +T+ M S++L G + +++ N +
Sbjct: 43 DGVPITVTAKDFTEQLILGNMVSIVLNAA-GAEVTNMTNTPGSFGVRQAMLNGSATVSPE 101
Query: 82 YWYPSLEKFI----------------APYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
Y ++ ++ + Y A+ +
Sbjct: 102 YTGNGWINYLGNEKPIPDPTAQWQAVNEADAVNNLTWLPPAPMNNTYAFAIREAEGERLG 161
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
+ N + M+ S + I
Sbjct: 162 VTKLSDLAGLPRNELTFCVESEFASRNDGFVPMLQTYGLSPDALGRV---THLDTGVIYT 218
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
+ + L++ L + ++ VV SD L P + +
Sbjct: 219 ATADGDCNFGEVYTTDGRIPALDLRVLDDDRKFF--PLYNLSVVVNSDLLRAHPELGEIF 276
Query: 246 KNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
+ + + + ++ D V R L
Sbjct: 277 DELSPRLTNETMMALNARVDSDGDDPAIVARDWL 310
>gi|227508983|ref|ZP_03939032.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, substrate binding and permease
protein [Lactobacillus brevis subsp. gravesensis ATCC
27305]
gi|227191565|gb|EEI71632.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, substrate binding and permease
protein [Lactobacillus brevis subsp. gravesensis ATCC
27305]
Length = 512
Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats.
Identities = 36/281 (12%), Positives = 70/281 (24%), Gaps = 37/281 (13%)
Query: 26 TPVRFADTGWTDIAATTAMTSVILEEI---LGYKTNIKLLAVPVTFRSLKNKGIDIFMGY 82
+ A ++ M ++E + F +LK+ I+I+ +
Sbjct: 238 EKIVIAGKLGSEPDILINMYRDLIEAGDKKIDVDLKPNFGKTSFLFSALKSNQINIYPEF 297
Query: 83 WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA---------------------VNDVGF 121
LE I + K + AK LA
Sbjct: 298 TGTVLEDIIPNSERQLQNKSATQIYHMAKNELAAKYNMTYGSPLNYNNTYTVVTTQKFAK 357
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
+ + D+ K + L + + ++ S L
Sbjct: 358 RHHLHTISDLKKLQNRLHSGF--DLEFMNRDDGYKGLVKKYGLSFNNTDLDPDLR----- 410
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNI 241
+ R V + ++ L F ++ + K P +
Sbjct: 411 --YQAIRRGQVQVIDGYSTDSQIRQYHLVSLRD--NKHLFPTYQGAPLMTKAFAKKHPAV 466
Query: 242 SRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ L + K + EM + K V R L+ H
Sbjct: 467 VKQLHQLAGKITAKEMREMNYDVNVKKISAAKVARHYLQRH 507
>gi|221068271|ref|ZP_03544376.1| Substrate-binding region of ABC-type glycine betaine transport
system [Comamonas testosteroni KF-1]
gi|220713294|gb|EED68662.1| Substrate-binding region of ABC-type glycine betaine transport
system [Comamonas testosteroni KF-1]
Length = 351
Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats.
Identities = 40/323 (12%), Positives = 90/323 (27%), Gaps = 39/323 (12%)
Query: 4 ILAVCLFLTTFSISYARD---ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-I 59
A + L+ S V+ + + T + LE LGY+ +
Sbjct: 22 TAAASMALSMVSTGAFAADELPGKGIKVQPLKSSIAEETFQTQLVMKALE-KLGYEVQPM 80
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
K + P +L N +W P + + + A ++
Sbjct: 81 KEVEYPTAHIALANGDATFMANHWNPLHADYYKNAGGDAKLYRKGVFSANAAQGYLIDKK 140
Query: 120 GFALGIKSY---------QDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
+ + + A + G PG I + K
Sbjct: 141 TADAHQITNLGQLKDPEIAKLFDTDGDGKADLTGCTPGWGCEAMIEHQLGAYKLRDT-VT 199
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGE---------- 216
+ + A + + P ++ +W P+ +++ ++ +L
Sbjct: 200 HKQGTYSALMADTITRYKAGKPILYYTWTPYWVSNVLKPGKDVVWLEVPFSALPGEQSGT 259
Query: 217 -------EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDR 269
+ GF + V + ++ P ++L + IK V N ++ +
Sbjct: 260 DTKLANGKNYGFIANNQQIVANKAWAEQNPAAAKLFEIIKLPVGDINAQNYMMSQGQNKA 319
Query: 270 QFVGRT---MLRTHPDLLKNWLI 289
+ R ++ H W+
Sbjct: 320 SDIERHTDGWIKAHQKTFDGWIS 342
>gi|93278789|pdb|2B4L|A Chain A, Crystal Structure Of The Binding Protein Opuac In Complex
With Glycine Betaine
gi|93278790|pdb|2B4M|A Chain A, Crystal Structure Of The Binding Protein Opuac In Complex
With Proline Betaine
gi|93278791|pdb|2B4M|B Chain B, Crystal Structure Of The Binding Protein Opuac In Complex
With Proline Betaine
gi|196049771|pdb|3CHG|D Chain D, The Compatible Solute-Binding Protein Opuac From Bacillus
Subtilis In Complex With Dmsa
gi|196049772|pdb|3CHG|A Chain A, The Compatible Solute-Binding Protein Opuac From Bacillus
Subtilis In Complex With Dmsa
gi|196049773|pdb|3CHG|B Chain B, The Compatible Solute-Binding Protein Opuac From Bacillus
Subtilis In Complex With Dmsa
gi|196049774|pdb|3CHG|C Chain C, The Compatible Solute-Binding Protein Opuac From Bacillus
Subtilis In Complex With Dmsa
Length = 268
Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats.
Identities = 35/161 (21%), Positives = 67/161 (41%), Gaps = 4/161 (2%)
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
+++ I GI+PG+ + + + + LI AS A + +++ P +
Sbjct: 8 EQVNKTIIGIDPGSGIMSLTDKAMKDYDLND--WTLISASSAAMTATLKKSYDRKKPIII 65
Query: 196 LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
W PH + S + YL ++ G E ++T+ R + + PN ++LL K++
Sbjct: 66 TGWTPHWMFSRYKLKYLDDPKQSYGSAE-EIHTITRKGFSKEQPNAAKLLSQFKWTQDEM 124
Query: 256 NEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDG 296
E+M + + V + H D + W GV G
Sbjct: 125 GEIMIKV-EEGEKPAKVAAEYVNKHKDQIAEWTKGVQKVKG 164
Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 2/98 (2%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYW 83
+ A W A+T + +LE+ LGY+ + + + ++ D + W
Sbjct: 163 KGDKINLAYVAWDSEIASTNVIGKVLED-LGYEVTLTQVEAGPMWTAIATGSADASLSAW 221
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
P+ K A +G + ++ G K L V
Sbjct: 222 LPNTHKAYAAKY-KGKYDDIGTSMTGVKMGLVVPQYMK 258
>gi|302334072|gb|ADL24265.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Staphylococcus aureus
subsp. aureus JKD6159]
Length = 313
Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats.
Identities = 27/289 (9%), Positives = 72/289 (24%), Gaps = 27/289 (9%)
Query: 13 TFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL----LAVPVTF 68
S+ + V+ ++ + M +++E K L + +
Sbjct: 20 GCSLPGLGSKSTKNDVKITALSTSESQIISHMLRLLIEHDTHGKIKPTLVNNLGSSTIQH 79
Query: 69 RSLKNKGIDIF-MGYWYPSLEKFIAPYL--------------EEGSIKLVAENLQGAKYM 113
+L N +I + Y L + + + G
Sbjct: 80 NALINGDANISGVRYNGTDLTGALKEAPIKDPKKAMIATQQGFKKKFDQTFFDSYGFANT 139
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
A + ++ K G++ + ++ +
Sbjct: 140 YAFMVTKETAKKYHLETVSDLAKHSKDLRLGMDSSWMNRKGDGYEGFKKEYGFDFGTVRP 199
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+ + V L + + ++ L + F + V ++
Sbjct: 200 ----MQIGLVYDALNSEKLDVALGYSTDGRIAAYDLKVLKD--DKQFFPPYAASAVATNE 253
Query: 234 YLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
L + P + + + K S + + ++ V L+ H
Sbjct: 254 LLRQHPELKTTINKLTGKISTSEMQRLNYEADGKGKEPAVVAEEFLKKH 302
>gi|268319161|ref|YP_003292817.1| ABC-type proline/glycine betaine transport system, permease and
substrate binding protein [Lactobacillus johnsonii
FI9785]
gi|262397536|emb|CAX66550.1| ABC-type proline/glycine betaine transport system, permease and
substrate binding protein [Lactobacillus johnsonii
FI9785]
Length = 515
Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats.
Identities = 35/307 (11%), Positives = 81/307 (26%), Gaps = 39/307 (12%)
Query: 4 ILAVCLFLTTFSI-------SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEI-LGY 55
++A+ L + S + A+ + A ++ A M ++E+
Sbjct: 215 LIALALVIWGGSSLYNHYANTSKNVAEPKQTITIAGKMGSEPAILINMYKDLIEKNDPNT 274
Query: 56 KT--NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIA------------------PYL 95
K F++L+ IDI+ + L+ +
Sbjct: 275 KVVLKPNFGGTTFLFKALQTDKIDIYPEFTGTVLQTLVKTGKKTGNDPNQVYVEARSDLK 334
Query: 96 EEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRI 155
++ ++ + Y LA + + +
Sbjct: 335 KQFDMEYLKPMAYQNGYALATTQKFAKDNHLTKMSDLNRVNKKVHAAF-DPDFTSLKDGY 393
Query: 156 LDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG 215
+ K + E+S NN V + N+ L
Sbjct: 394 PGLKKIYKLDFASIKSTESSIR------YHAIANNQANVVDGYTTDAEIKKYNLVMLDDD 447
Query: 216 EEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVG 273
++ ++R+ + ++ P I + L + K + +M + + V
Sbjct: 448 KKFF--PPYQGAPLMRTKFAERNPQIVKALNKLAGKITTEEMQQMNYQVNVKHEKPAKVA 505
Query: 274 RTMLRTH 280
L H
Sbjct: 506 HDYLVKH 512
>gi|56413543|ref|YP_150618.1| ABC transporter periplasmic binding protein [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|197362468|ref|YP_002142105.1| ABC transporter periplasmic binding protein [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
gi|56127800|gb|AAV77306.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Paratyphi A str. ATCC
9150]
gi|197093945|emb|CAR59435.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Paratyphi A str.
AKU_12601]
Length = 300
Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats.
Identities = 39/304 (12%), Positives = 88/304 (28%), Gaps = 37/304 (12%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
K L L T S + TP+ A G+T+ +AMT L++ G++ +
Sbjct: 4 KKHLLGWLAATLLFSSQTQA----TPLVLATKGFTEQHILSAMTVQYLQKK-GFQVQPQT 58
Query: 62 LAVPVT-FRSLKNKGIDIFMGYWYPS---------------LEKFIAPYLEEGSIKLVAE 105
V ++ NK IDI Y S + + + +
Sbjct: 59 NIAAVISRNAMVNKQIDITWEYTGTSLIIFNRIDKRMSPQETYDTVKRLDAKLGLVWLKP 118
Query: 106 NLQGAKYMLAVNDVGFALGIKSY--------QDIAKYKKELGAKIYGIEPGNEGNQRILD 157
Y A+ + + + + + + + +
Sbjct: 119 ADMNNTYAFAMQRKRAESENITTISQMVAKIEQVRQNDPDHNWMLGLDLEFAGRSDGMKP 178
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
+ + L ++ + + R+ + L + ++ L +
Sbjct: 179 LQQAYQMQLDRPQIRQMDPG----LVYNAVRDGLVDAGLVYTTDGRVKGFDLKVLEDDKG 234
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRT 275
+V VVR + L+ P + L + + + + + + + Q V
Sbjct: 235 FF--PSYAVTPVVRKEVLEANPGLDDALNTLSGLLNNDVISTLNAQVDIEHRTPQQVAHQ 292
Query: 276 MLRT 279
L+
Sbjct: 293 FLQD 296
>gi|16760369|ref|NP_455986.1| ABC transporter periplasmic binding protein [Salmonella enterica
subsp. enterica serovar Typhi str. CT18]
gi|29141867|ref|NP_805209.1| ABC transporter periplasmic binding protein [Salmonella enterica
subsp. enterica serovar Typhi str. Ty2]
gi|213163481|ref|ZP_03349191.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Typhi str. E00-7866]
gi|213420676|ref|ZP_03353742.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Typhi str. E01-6750]
gi|213428721|ref|ZP_03361471.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Typhi str. E02-1180]
gi|213610170|ref|ZP_03369996.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Typhi str. E98-2068]
gi|213649081|ref|ZP_03379134.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Typhi str. J185]
gi|213865336|ref|ZP_03387455.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Typhi str. M223]
gi|289808578|ref|ZP_06539207.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Typhi str. AG3]
gi|289829749|ref|ZP_06547282.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Typhi str. E98-3139]
gi|25367101|pir||AC0681 probable ABC transporter periplasmic binding protein STY1571
[imported] - Salmonella enterica subsp. enterica serovar
Typhi (strain CT18)
gi|16502664|emb|CAD01820.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Typhi]
gi|29137495|gb|AAO69058.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Typhi str. Ty2]
Length = 300
Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats.
Identities = 38/304 (12%), Positives = 87/304 (28%), Gaps = 37/304 (12%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
K L L T S + A P+ A +T+ +AMT L++ G++ +
Sbjct: 4 KKHLLGWLATTLLFSSQTQAA----PLVLATKSFTEQHILSAMTVQYLQKK-GFQVQPQT 58
Query: 62 LAVPVT-FRSLKNKGIDIFMGYWYPS---------------LEKFIAPYLEEGSIKLVAE 105
V ++ NK IDI Y S + + + +
Sbjct: 59 NIAAVISRNAMVNKQIDITWEYTGTSLIIFNRIDKRMSPQETYDTVKRLDAKLGLVWLKP 118
Query: 106 NLQGAKYMLAVNDVGFALGIKSY--------QDIAKYKKELGAKIYGIEPGNEGNQRILD 157
Y A+ + + + + + + + +
Sbjct: 119 ADMNNTYAFAMQRKRAESENITTISQMVAKIEQVRQNDPDHNWMLGLDLEFAGRSDGMKP 178
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
+ + L ++ + + R+ + L + ++ L +
Sbjct: 179 LQQAYQMQLDRPQIRQMDPG----LVYNAVRDGLVDAGLVYTTDGRVKGFDLKVLEDDKG 234
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRT 275
+V VVR + L+ P + L + + + + + + + Q V
Sbjct: 235 FF--PSYAVTPVVRKEVLEANPGLDDALNTLSGLLNNDVISTLNAQVDIEHRTPQQVAHQ 292
Query: 276 MLRT 279
L+
Sbjct: 293 FLQD 296
>gi|197247865|ref|YP_002146550.1| glycine betaine ABC transporter substrate-binding protein
[Salmonella enterica subsp. enterica serovar Agona str.
SL483]
gi|197211568|gb|ACH48965.1| substrate-binding region of ABC-type glycine betaine transport
system [Salmonella enterica subsp. enterica serovar
Agona str. SL483]
Length = 300
Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats.
Identities = 38/304 (12%), Positives = 87/304 (28%), Gaps = 37/304 (12%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
K L L T S + A P+ A +T+ +AMT L++ G++ +
Sbjct: 4 KKHLLEWLAATLLFSSQTQAA----PLVLATKSFTEQHILSAMTVQYLQKK-GFQVQPQT 58
Query: 62 LAVPVT-FRSLKNKGIDIFMGYWYPS---------------LEKFIAPYLEEGSIKLVAE 105
V ++ NK IDI Y S + + + +
Sbjct: 59 NIAAVISRNAMVNKQIDITWEYTGTSLIIFNRIDKRMSPQETYDTVKRLDAKLGLVWLKP 118
Query: 106 NLQGAKYMLAVNDVGFALGIKSY--------QDIAKYKKELGAKIYGIEPGNEGNQRILD 157
Y A+ + + + + + + + +
Sbjct: 119 ADMNNTYAFAMQRKRAESENITTISQMVAKIEQVRQNDPDHNWMLGLDLEFAGRSDGMKP 178
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
+ + L ++ + + R+ + L + ++ L +
Sbjct: 179 LQQAYQMQLDRPQIRQMDPG----LVYNAVRDGLVDAGLVYTTDGRVKGFDLKVLEDDKG 234
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRT 275
+V VVR + L+ P + L + + + + + + + Q V
Sbjct: 235 FF--PSYAVTPVVRKEVLEANPGLDDALNTLSGLLNNDVISTLNAQVDIEHRTPQQVAHQ 292
Query: 276 MLRT 279
L+
Sbjct: 293 FLQD 296
>gi|307719469|ref|YP_003875001.1| transporter [Spirochaeta thermophila DSM 6192]
gi|306533194|gb|ADN02728.1| transporter [Spirochaeta thermophila DSM 6192]
Length = 321
Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats.
Identities = 45/300 (15%), Positives = 95/300 (31%), Gaps = 30/300 (10%)
Query: 4 ILAVCLFLTTFSISYARDADSC-TPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IK 60
+ + + IS A+ + P+ A T+ A M ++LEE G+ ++
Sbjct: 18 LFLSVFLIFSLVISCAKKQEETRGPITVASKIDTEGALLGTMIVILLEEH-GFAVENKVQ 76
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYP------------------SLEKFIAPYLEEGSIKL 102
L + +++ N IDI+ Y + E +
Sbjct: 77 LGPTDIVRKAIINGQIDIYPEYTGNGGFFYPEAPRDVWKDRIEAYRTVRDLDYETHRLVW 136
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL-GAKIYGIEPGNEGNQRILDMINN 161
+ + +AV + + +D+A+Y ++ KI E +
Sbjct: 137 LEPAPANNTWAIAVRKDLAGGSLSTLEDLARYIEQGGEFKIAVSEEFVSRPDALPAFEEA 196
Query: 162 NKFSLKGFRLIEASELASFSQIRRDQRNNI--PAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F+L +++ S + + R +++ + L + L +
Sbjct: 197 YGFTLAKSQMLVLS-GGNTATTERAAAEGTDGVNAAMAYGTDGQLAALGLVVLEDNLGV- 254
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
VVR + L P I +L+ + ++ + I +D V R L
Sbjct: 255 -QPVYEPAPVVREEVLKTYPEIEEILEPVFKSLTLTTLQSLNARIAVEGEDPAVVAREYL 313
>gi|59711392|ref|YP_204168.1| glycine betaine transporter periplasmic subunit [Vibrio fischeri
ES114]
gi|59479493|gb|AAW85280.1| glycine betaine transporter subunit [Vibrio fischeri ES114]
Length = 335
Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats.
Identities = 40/325 (12%), Positives = 95/325 (29%), Gaps = 39/325 (12%)
Query: 2 YKILAVCLFLTTFSISYARD---ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
K L + T + V+ + + T++ + LEE LGY
Sbjct: 6 KKALTASIVSTLALSTNVWAEKLPGEGVSVQALQSTVAEETFQTSIVNRALEE-LGYDVQ 64
Query: 59 -IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
K + V + S+ W+P + + + GA ++
Sbjct: 65 PTKEVDYNVAYTSIAKGDATFLAVGWFPLHADKYTMSGGDDKFYRQGQYVSGAAQGYLID 124
Query: 118 DVGFALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
+ + + A + G PG I I +
Sbjct: 125 KKTAEKYGITNIGQLKDPKIAKLFDADGDGKADLTGCNPGWGCEMVIEHQIETYQLEDT- 183
Query: 169 FRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP----INSDLNIHYLPGGEEISGFGEA 224
+ + A + +N P ++ +W P+ + + ++ +L
Sbjct: 184 VTHNQGNYAAIIADTISRYKNGEPILYYTWTPYWVSGVLVPNKDVVWLEVPFSALPGERK 243
Query: 225 SVYT-----------------VVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNK- 266
+V T + ++ + P ++L + IK ++ + ++ K
Sbjct: 244 NVDTTLSNGKNYGFEMNSMRIIANKEFAAQNPAAAKLFEIIKLNINDVSAQNMMMSKGKN 303
Query: 267 --QDRQFVGRTMLRTHPDLLKNWLI 289
D + ++ + +L +W+
Sbjct: 304 STADIESHVNGWIKANRNLFDSWIN 328
>gi|227532962|ref|ZP_03963011.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Lactobacillus paracasei subsp. paracasei ATCC 25302]
gi|227189363|gb|EEI69430.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Lactobacillus paracasei subsp. paracasei ATCC 25302]
Length = 510
Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats.
Identities = 25/277 (9%), Positives = 66/277 (23%), Gaps = 19/277 (6%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEI---LGYKTNIKLLAVPVTFRSLKNKGID 77
+ A ++ M ++++ +G + +L+ I
Sbjct: 229 ATAPKETITIAGKLGSEPDILINMYKELIQKADPDVGVTLKSNFGQTSFLYNALRTDKIG 288
Query: 78 IFMGYWYPSLEKFIAPYLEEGSIKLVAENLQG------AKYMLAVNDVGFALGIK----- 126
I+ + L P + ++ AK L+
Sbjct: 289 IYPEFSGTVLASLTKPSAAQQQQVTAGKDNYPLAKKLLAKQGLSYLKPMAYNNTYALVVK 348
Query: 127 -SYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
S+ + +D + K + L + S +
Sbjct: 349 ESFAKRYDLHTISDLGKIAPSIRAGFDLEFIDRQDGYKGIQSKYGLQFKVDSMDASLRYQ 408
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
+ + ++ L + + ++R+ + +K P + L
Sbjct: 409 ALDRGQINLTDGYTTDAQLRQYHLVALQDDKGLF--PIYRGAPLMRTAFAEKHPQLVAAL 466
Query: 246 KNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ + + M + + V L H
Sbjct: 467 NKLAGQITEKQMQTMNYAVSVKNKKAATVAHRYLVQH 503
>gi|314934767|ref|ZP_07842126.1| putative ABC transporter, substrate-binding protein [Staphylococcus
caprae C87]
gi|313652697|gb|EFS16460.1| putative ABC transporter, substrate-binding protein [Staphylococcus
caprae C87]
Length = 324
Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats.
Identities = 50/284 (17%), Positives = 99/284 (34%), Gaps = 20/284 (7%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA-VPVTFRSLKNKGIDIFMGYW 83
V + + + + +L++ GY + + S+
Sbjct: 42 KKDVNIPYIASDNSTPRSLVIAEVLKKA-GYNVTTTPVQASGPLYASVSQDSDSFHASGI 100
Query: 84 YPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVNDVGFALGIKSYQDIAKYK------- 135
+PS +K + +NL K LAV + S + K
Sbjct: 101 FPSTDKSFYNKFKSNLTVYDKKNLVDNVKVGLAVPKYEQDIDSISDLNSKKSTTSSNTGN 160
Query: 136 ------KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRN 189
K + I G + N ++ ++ L + L E+S+ F I++ +
Sbjct: 161 SSNSFGKSVDWTIQGTDARNGVMKQTKSELD--DGQLDKYSLKESSDQDQFKTIQKAYKQ 218
Query: 190 NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
P VF + EP + +L+I L E+I G + + V ++ D P + I
Sbjct: 219 QKPIVFTAMEPSWFSKELDIKMLKDPEKIYGKDDEHINLVFNKNFKDDHPAAYTIATRIS 278
Query: 250 --FSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGV 291
+S E ++ K I + ++ + V + + H + WL G+
Sbjct: 279 DNWSKDDEEKLAKKIFKDNKNPEDVAKDYVDNHDTKVDKWLKGI 322
>gi|227511900|ref|ZP_03941949.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, binding and permease protein
[Lactobacillus buchneri ATCC 11577]
gi|227084876|gb|EEI20188.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, binding and permease protein
[Lactobacillus buchneri ATCC 11577]
Length = 512
Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats.
Identities = 35/272 (12%), Positives = 74/272 (27%), Gaps = 19/272 (6%)
Query: 26 TPVRFADTGWTDIAATTAMTSVILEEI---LGYKTNIKLLAVPVTFRSLKNKGIDIFMGY 82
+ A ++ M ++E + F +LK+ I+I+ +
Sbjct: 238 ERIVIAGKLGSEPDILINMYRDLIEAGDKKIDVDLKPNFGKTSFLFSALKSNQINIYPEF 297
Query: 83 WYPSLEKFIAPYLEEGSIKLVAENL------QGAKYMLAVNDVGFALGIKSYQDIAKYKK 136
LE I + K + AKY + + K+ K
Sbjct: 298 TGTVLEDIIPNSERQLQNKSATQIYHMAKDELAAKYNMTYGSPLDYNNTYTVVTTHKFAK 357
Query: 137 ELGAKIYGIEP------GNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
+ + + ++ + K +K + L + + R
Sbjct: 358 RHHLRTISDLKKLQSRLHSGFDLEFMNRDDGYKGLVKKYGLSFNNTDLDPDLRYQAIRRG 417
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI-- 248
V + ++ L F ++ + K P + + L+ +
Sbjct: 418 QVQVIDGYSTDSQIRQYHLVSLRD--NKHLFPTYQGAPLMTKAFAKKHPAVVKQLQQLAG 475
Query: 249 KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
K + EM + K V R L+ H
Sbjct: 476 KITAKEMREMNYDVNVKKVSAAKVARHYLQRH 507
>gi|313891108|ref|ZP_07824727.1| glycine betaine/carnitine/choline-binding protein [Streptococcus
pseudoporcinus SPIN 20026]
gi|313120471|gb|EFR43591.1| glycine betaine/carnitine/choline-binding protein [Streptococcus
pseudoporcinus SPIN 20026]
Length = 308
Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats.
Identities = 37/304 (12%), Positives = 81/304 (26%), Gaps = 30/304 (9%)
Query: 1 MYKILAVCLFLTTFSISYARD-----ADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M K L + L + + ++ A T+ + + + ++ LGY
Sbjct: 1 MKKKLYISLSILLTFSACFFAYHHFFKKQSETIKIAAQSTTESSIMANIIAELVNHELGY 60
Query: 56 KTNIKL--LAVPVTFRSLKNKGIDIFMGYWY---------------PSLEKFIAPYLEEG 98
+T I + VT ++ DI + P I
Sbjct: 61 QTVIVPNLGSSNVTHQAQLRGDADISATRYTGTDITGSLRMEAVKDPQKAAKIVKKEFTK 120
Query: 99 SIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
G A + I+ + + GI+ +
Sbjct: 121 RFNQTWFPTYGFSDTYAFMVTSDYAKQNHLETISDMQNIKASAKVGIDSTWMNRKGDGYP 180
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ + L + +N L + ++ L +
Sbjct: 181 DFSKTYGFTFDNLYP----MQIGLVYDAVSSNKMQAVLGYSTDGRIKSYDLKILKD--DK 234
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
F VV + L K P + ++L + + S+ + + + + V +
Sbjct: 235 QFFPPYECSMVVSNSLLKKYPKLKKVLHRLDGQISLETMQTLNYKVDDKLLEPAVVAKEF 294
Query: 277 LRTH 280
L++H
Sbjct: 295 LKSH 298
>gi|225022214|ref|ZP_03711406.1| hypothetical protein CORMATOL_02248 [Corynebacterium matruchotii
ATCC 33806]
gi|224945147|gb|EEG26356.1| hypothetical protein CORMATOL_02248 [Corynebacterium matruchotii
ATCC 33806]
Length = 325
Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats.
Identities = 30/322 (9%), Positives = 68/322 (21%), Gaps = 46/322 (14%)
Query: 1 MY--KILAVCLFLTTFSISYAR-------------------DADSCTPVRFADTGWTDIA 39
M KIL++ + T +++ V +T+
Sbjct: 1 MKLTKILSILVIGCTLALAGCGLRPSASVIPNLHPAAIQPVPGAEGKRVVITSKSFTEQL 60
Query: 40 ATTAMTSVILEEILGYKTNIKLL--AVPVTFRSLKNKGIDIFMGYWYPSLEKFI------ 91
+ I + G++ + L++ I Y + ++
Sbjct: 61 IMGKIAVYIA-DAAGFRATDMTGVPGSQPARKLLESGQAQILYEYTGTAWLTYLGHETGI 119
Query: 92 ----------APYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAK 141
+ Y AV +
Sbjct: 120 PDQKKQWQAVYEADLANGLTWSNPTPLNNTYAFAVRREYAEQHHLTKLSDIASLPVSERT 179
Query: 142 IYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE--LASFSQIRRDQRNNIPAVFLSWE 199
+ N + M+ I L I + + +
Sbjct: 180 MCVDAEFNSRLDGLNPMLEKYGIPRDTPEGIPEKNISLMDTGTIYQATDTGACNLGEVFT 239
Query: 200 PHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENE 257
L++ L + + V S++L + P I+ +
Sbjct: 240 TDGRIQSLDLVVLADDRQYF--PAYNAAPVFNSEFLAQYPEIADRFAQVTRLLDDDTMRS 297
Query: 258 MMKLILNNKQDRQFVGRTMLRT 279
+ + + D V L
Sbjct: 298 LNLKVDVDGADPGTVALDWLVE 319
>gi|42519465|ref|NP_965395.1| ABC transporter permease component [Lactobacillus johnsonii NCC
533]
gi|41583753|gb|AAS09361.1| ABC transporter permease component [Lactobacillus johnsonii NCC
533]
gi|329667013|gb|AEB92961.1| ABC transporter permease component [Lactobacillus johnsonii DPC
6026]
Length = 515
Score = 119 bits (297), Expect = 6e-25, Method: Composition-based stats.
Identities = 35/307 (11%), Positives = 81/307 (26%), Gaps = 39/307 (12%)
Query: 4 ILAVCLFLTTFSI-------SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEI-LGY 55
++A+ L + S + A+ + A ++ A M ++E+
Sbjct: 215 LIALALVIWGGSSLYNHYANTSKNVAEPKQTITIAGKMGSEPAILINMYKDLIEKNDPNT 274
Query: 56 KT--NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIA------------------PYL 95
K F++L+ IDI+ + L+ +
Sbjct: 275 KVVLKPNFGGTTFLFKALQTDKIDIYPEFTGTVLQTLVKTGKKTGNDPNQVYVEARSDLK 334
Query: 96 EEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRI 155
++ ++ + Y LA + + +
Sbjct: 335 KQFDMEYLKPMAYQNGYALATTQKFAKDNHLTKMSDLNRVNKKVHAAF-DPDFTSLKDGY 393
Query: 156 LDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG 215
+ K + E+S NN V + N+ L
Sbjct: 394 PGLKKIYKLDFASIKSTESSIR------YHAIANNQANVVDGYTTDAEIKKYNLVMLDDD 447
Query: 216 EEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVG 273
++ ++R+ + ++ P I + L + K + +M + + V
Sbjct: 448 KKFF--PPYQGAPLMRAKFAERNPQIVKALNKLAGKITTEEMQQMNYQVNVKHEKPAKVA 505
Query: 274 RTMLRTH 280
L H
Sbjct: 506 HDYLVKH 512
>gi|289423719|ref|ZP_06425517.1| glycine betaine/choline ABC transporter, ATP-binding protein
[Peptostreptococcus anaerobius 653-L]
gi|289155883|gb|EFD04550.1| glycine betaine/choline ABC transporter, ATP-binding protein
[Peptostreptococcus anaerobius 653-L]
Length = 574
Score = 119 bits (297), Expect = 6e-25, Method: Composition-based stats.
Identities = 29/306 (9%), Positives = 82/306 (26%), Gaps = 35/306 (11%)
Query: 2 YKILAVCLFLTTFSISYARDA-----DSCTPVRFADTGWTDIAATTAMTSVILEE---IL 53
I+A ++ +++ S + A + T + ++E
Sbjct: 250 KAIIAFLAIFSSLTLTACSLPGLGGEASKGDIVIAGGSTAERQIITEIQKQMIEHYNPKQ 309
Query: 54 GYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSL-----------------EKFIAPYLE 96
L + + F++L +I + + EK I Y +
Sbjct: 310 KVSVINNLSSAMLVFQTLNGGYANIGSAMYTGTTLTGELGMKPTTDPEEALEKVIKGYND 369
Query: 97 EGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
+ ++ + Y V + ++ K G++ +
Sbjct: 370 KFNLIWMPTYGFENTYAFMVKKEFAEKH--NLNKVSDLKPIAKDLKAGVDTSWIQRKGDG 427
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+K+ ++ + + V L + + + L
Sbjct: 428 YQAFKDKYKFDFDSVLPMD----VGLVYSAVNSGKMDVVLGYSTDGRINSYGLKVLEDDM 483
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
I ++ +D+ P + +L + + ++ K + + V +
Sbjct: 484 RIF--PPYDASPIISKKTVDEHPEVVDVLLKLEGSITSETMQKLNAQCDGEKIEAKLVAK 541
Query: 275 TMLRTH 280
L+ +
Sbjct: 542 KFLQDN 547
>gi|119944386|ref|YP_942066.1| glycine betaine transporter periplasmic subunit [Psychromonas
ingrahamii 37]
gi|119862990|gb|ABM02467.1| Substrate-binding region of ABC-type glycine betaine transport
system [Psychromonas ingrahamii 37]
Length = 335
Score = 119 bits (297), Expect = 6e-25, Method: Composition-based stats.
Identities = 41/327 (12%), Positives = 93/327 (28%), Gaps = 40/327 (12%)
Query: 1 MYKILAVCLFLTTFSISYARDAD----SCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
+ K + + ++S A A+ V+ + + T + + + + LGY
Sbjct: 4 IRKTILTTAIAVSATLSSAVWAENLPGDGITVQPIQSTIAEETFQTLIVNKAM-QALGYT 62
Query: 57 TN-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
K ++ V + ++ W P + A + E ++GA
Sbjct: 63 VKGTKEVSYNVAYTAIAAGDATYLADNWNPLHKDKYAAAGGDEKFYRKGEYVKGAGQGYL 122
Query: 116 VNDVGFALGIKSYQDIAKYKKELGA---------KIYGIEPGNEGNQRILDMINNNKFSL 166
++ + K + + G PG I ++
Sbjct: 123 IDKKTADKYNITNIAQLKDPEIAKHFDANGDGTADLTGCNPGWGCEGVIEHQLDTFGLRE 182
Query: 167 KGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP----INSDLNIHYLPGGE------ 216
+ + A + + +W P+ + ++ +L
Sbjct: 183 T-VDHNQGNYSAIIADTIARYNKGGSIFYYTWTPYWVSGVLVPGKDVVWLEVPFSSLPGE 241
Query: 217 -----------EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE---NEMMKLI 262
+ GF S++ V + D P + L +K ++ N MM
Sbjct: 242 RSNVDTTLANGKNYGFQMNSMHIVANKKFTDANPAAAELFAIMKLNINDISAENGMMAKG 301
Query: 263 LNNKQDRQFVGRTMLRTHPDLLKNWLI 289
N ++D ++ H W+
Sbjct: 302 ANTQKDINAHADGWIKAHQKQFDAWIE 328
>gi|255066447|ref|ZP_05318302.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Neisseria sicca ATCC
29256]
gi|255049327|gb|EET44791.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Neisseria sicca ATCC
29256]
Length = 509
Score = 119 bits (297), Expect = 6e-25, Method: Composition-based stats.
Identities = 33/287 (11%), Positives = 74/287 (25%), Gaps = 36/287 (12%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILG---YKTNIKLLAVPVTFRSLKNKGI 76
+ S + A ++ M ++EE F +L + I
Sbjct: 225 QTNPSAQKITIAGKLGSEPDILINMYKQLIEENNPRAQVMLKPNFGKTSFLFNALNSGEI 284
Query: 77 DIFMGYWYP---------------------SLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
DI+ + + + ++ + + Y LA
Sbjct: 285 DIYPEFTGTVLESLVKVPAEEQNRRLSPEQTYQTAKDLLAQQHRLTFLPPMAYQNTYALA 344
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
V+ A K + D + K +
Sbjct: 345 VSQDYAAAHDLHKISDLKRVQNQIR--------AGFTLEFTDRADGYKGLQQHGIQFSHL 396
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYL 235
+ N + ++ + L +I+ F ++++++
Sbjct: 397 STLEPALRYTALLNGKIDLIEAYSTDSDLKQYRLAVLSD--DIALFPSYQGAPLMKTEFA 454
Query: 236 DKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
++ P+I L + K S A EM + + V R L+ +
Sbjct: 455 EQHPDIVNALNKLAGKISEAEMTEMNYRVKVGGEKPADVARDYLQKN 501
>gi|90413414|ref|ZP_01221406.1| glycine betaine-binding protein [Photobacterium profundum 3TCK]
gi|90325502|gb|EAS41979.1| glycine betaine-binding protein [Photobacterium profundum 3TCK]
Length = 260
Score = 119 bits (297), Expect = 6e-25, Method: Composition-based stats.
Identities = 44/256 (17%), Positives = 86/256 (33%), Gaps = 3/256 (1%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWY 84
+ T + T ++ S +L + +G++ F+ LK+ ID+ W
Sbjct: 2 SQKLTLGVTDLSFHRITASLISHVL-QNMGFEVRCVFSPHQENFKKLKDGDIDLLTSAWL 60
Query: 85 PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDI--AKYKKELGAKI 142
PS +EE + + V D + D+ K++ I
Sbjct: 61 PSSHGMYKSDVEEVEQLIELGLHYEPYALWGVPDYVPTEDVAEVGDLLKPDVVKKMKNDI 120
Query: 143 YGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP 202
GI PG + + M+ + G+ +E FS + N + W+P
Sbjct: 121 QGINPGAGITRFSIKMMEEYGLNDAGYAFHTGTEEDCFSTFEQAVENKEWFIVPLWKPQF 180
Query: 203 INSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI 262
++ NI + + + G + +V + S L ++FS + E+ +
Sbjct: 181 LHFRYNIREIKEPKGLLGIVDRAVLLLRESKKELFTKEQLETLDTLRFSNEIIAELDYKV 240
Query: 263 LNNKQDRQFVGRTMLR 278
Q + V L
Sbjct: 241 SRENQPIETVTANWLA 256
>gi|197334358|ref|YP_002155546.1| glycine betaine/L-proline-binding protein [Vibrio fischeri MJ11]
gi|197315848|gb|ACH65295.1| glycine betaine/L-proline-binding protein [Vibrio fischeri MJ11]
Length = 335
Score = 119 bits (297), Expect = 6e-25, Method: Composition-based stats.
Identities = 41/325 (12%), Positives = 95/325 (29%), Gaps = 39/325 (12%)
Query: 2 YKILAVCLFLTTFSISYARD---ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
K L + T + V+ + + T++ + LEE LGY
Sbjct: 6 KKALTASIVSTLALSTNVWAEKLPGEGVSVQALQSTVAEETFQTSIVNRALEE-LGYDVQ 64
Query: 59 -IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
K + V + S+ W+P + + + GA ++
Sbjct: 65 PTKEVDYNVAYTSIAKGDATFLAVGWFPLHADKYTMSGGDDKFYRQGQYVSGAAQGYLID 124
Query: 118 DVGFALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
+ + + A + G PG I I +
Sbjct: 125 KKTAEKYGITNIGQLKDPKIAKLFDADGDGKADLTGCNPGWGCEMVIEHQIETYQLEDT- 183
Query: 169 FRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP----INSDLNIHYLPGGEEISGFGEA 224
+ + A + +N P ++ +W P+ + + ++ +L
Sbjct: 184 VTHNQGNYAAIIADTISRYKNGEPILYYTWTPYWVSGVLVPNKDVVWLEVPFSALPGERK 243
Query: 225 SVYT-----------------VVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNK- 266
+V T + ++ + P +RL + IK ++ + ++ K
Sbjct: 244 NVDTTLSNGKNYGFEMNSMRIIANKEFAAQNPAAARLFEIIKLNINDVSAQNMMMSKGKN 303
Query: 267 --QDRQFVGRTMLRTHPDLLKNWLI 289
D + ++ + +L +W+
Sbjct: 304 STADIESHVNGWIKANRNLFDSWIN 328
>gi|305680424|ref|ZP_07403232.1| ABC transporter, substrate-binding protein, QAT family
[Corynebacterium matruchotii ATCC 14266]
gi|305659955|gb|EFM49454.1| ABC transporter, substrate-binding protein, QAT family
[Corynebacterium matruchotii ATCC 14266]
Length = 325
Score = 119 bits (297), Expect = 7e-25, Method: Composition-based stats.
Identities = 30/322 (9%), Positives = 69/322 (21%), Gaps = 46/322 (14%)
Query: 1 MY--KILAVCLFLTTFSISYAR-------------------DADSCTPVRFADTGWTDIA 39
M KIL++ + T +++ V +T+
Sbjct: 1 MKLTKILSILVIGCTLALAGCGLRPSASVIPNLHPAAIQPVPGAEGKRVVITSKAFTEQL 60
Query: 40 ATTAMTSVILEEILGYKTNIKLL--AVPVTFRSLKNKGIDIFMGYWYPSLEKFI------ 91
+ I + G++ + L++ I Y + ++
Sbjct: 61 IMGKIAVYIA-DAAGFRATDMTGVPGSQPARKLLESGQAQILYEYTGTAWLTYLGHETGI 119
Query: 92 ----------APYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAK 141
+ Y AV +
Sbjct: 120 PDQKKQWQAVYEADLANGLTWSNPTPLNNTYAFAVRREYAEQHHLTKLSDIASLPVSERT 179
Query: 142 IYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE--LASFSQIRRDQRNNIPAVFLSWE 199
+ N + M+ I L I + + +
Sbjct: 180 MCVDAEFNSRLDGLNPMLEKYGIPRGTPEGIPEKNISLMDTGTIYQATDTGACNLGEVFT 239
Query: 200 PHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENE 257
L++ L + + V S++L + P I+ +
Sbjct: 240 TDGRIQSLDLVVLEDDRQYF--PAYNAAPVFNSEFLAQYPEIADRFAQVTRLLDDDTMRS 297
Query: 258 MMKLILNNKQDRQFVGRTMLRT 279
+ + + +D V L
Sbjct: 298 LNLKVDVDGEDPGTVALDWLVE 319
>gi|301067614|ref|YP_003789637.1| proline/glycine betaine ABC transporter permease/substrate binding
protein [Lactobacillus casei str. Zhang]
gi|300440021|gb|ADK19787.1| ABC-type proline/glycine betaine transport system, permease and
substrate binding protein [Lactobacillus casei str.
Zhang]
Length = 510
Score = 119 bits (297), Expect = 7e-25, Method: Composition-based stats.
Identities = 25/277 (9%), Positives = 66/277 (23%), Gaps = 19/277 (6%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEI---LGYKTNIKLLAVPVTFRSLKNKGID 77
+ A ++ M ++++ +G + +L+ I
Sbjct: 229 ATAPKETITIAGKLGSEPDILINMYKELIQKADPDVGVTLKSNFGQTSFLYNALRTDKIG 288
Query: 78 IFMGYWYPSLEKFIAPYLEEGSIKLVAENLQG------AKYMLAVNDVGFALGIK----- 126
I+ + L P + ++ AK L+
Sbjct: 289 IYPEFSGTVLASLTKPSAAQQQQVTAGKDNYPLAKKLLAKQGLSYLKPMAYNNTYALVVK 348
Query: 127 -SYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
S+ + +D + K + L + S +
Sbjct: 349 ESFAKRYDLHTISDLGKIAPSIRAGFDLEFIDRQDGYKGIQSKYGLQFKVDSMDASLRYQ 408
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
+ + ++ L + + ++R+ + +K P + L
Sbjct: 409 ALDRGQINLTDGYTTDAQLRQYHLVALQDDKGLF--PIYRGAPLMRTAFAEKHPQLVAAL 466
Query: 246 KNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ + + M + + V L H
Sbjct: 467 NKLAGQITEKQMQTMNYAVSVKNEKAATVAHRYLVQH 503
>gi|116618119|ref|YP_818490.1| ABC-type proline/glycine betaine transport systems, permease and
substrate binding protein [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
gi|116096966|gb|ABJ62117.1| ABC-type proline/glycine betaine transport systems, permease and
substrate binding protein [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
Length = 508
Score = 119 bits (297), Expect = 7e-25, Method: Composition-based stats.
Identities = 33/283 (11%), Positives = 77/283 (27%), Gaps = 35/283 (12%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILE---EILGYKTNIKLLAVPVTFRSLKNKGIDI 78
A+ + A ++ M ++E E + F +LKN +DI
Sbjct: 230 ANRVETITIAGKLGSEPEILINMYKQLIEAEDEHVHVTLKPNFGKTTFLFSALKNNQVDI 289
Query: 79 FMGYWYP------------------SLEKFIAPYLEEGSIKLVAENLQGAKYMLAV-NDV 119
+ + + + ++ + + Y LAV
Sbjct: 290 YPEFTGSVLETLGKGNNPAGQTANQTYQLAKQRLAKQEQMTYLKPMQYNNTYALAVTKKF 349
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+K+ D+ + + L + + N + + ++
Sbjct: 350 QQEHHLKTISDLTQVESILKPGMTL--EFIDRNDGLKGIKKTYGLD-------VTAKSME 400
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+ + ++ ++ L F ++++ + +K P
Sbjct: 401 PALRYEAISKGKINLVDAYATDSELRQYHLALLKD--NKHFFPTYQGAPLMKTSFANKHP 458
Query: 240 NISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ + L + K S EM + KQ V L H
Sbjct: 459 KVVKALNKLAGKISETDMQEMNYEVNVKKQSASTVAHRYLVKH 501
>gi|329922941|ref|ZP_08278457.1| glycine betaine/carnitine/choline-binding protein [Paenibacillus
sp. HGF5]
gi|328941714|gb|EGG37999.1| glycine betaine/carnitine/choline-binding protein [Paenibacillus
sp. HGF5]
Length = 300
Score = 119 bits (297), Expect = 7e-25, Method: Composition-based stats.
Identities = 35/294 (11%), Positives = 84/294 (28%), Gaps = 28/294 (9%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
+L + L + + +D + +T+ M ++E+ K ++
Sbjct: 11 MLICLMALAAITSACGIQSD----LTIGTQTYTETKIIAEMYKALIEDQTDLKVDVIPDL 66
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLV--------------AENL 107
+ + ++K + + Y + K++ N
Sbjct: 67 ASSSLVINAMKRNDVQMATLYTGEIFNNHFPISGTKDRDKVLKEAQEGFQEHFGFTWMNP 126
Query: 108 QGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
G + A Y I+ KK++ + G++ + + +K
Sbjct: 127 LGFENTYAFTVRKDLAEANGYAKISDVKKDMASMKLGVDTTWLERSTDGYPAFSKAYDIK 186
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
++ S + N + L++ + L ++ F
Sbjct: 187 FGQVFP----MEISLVYSAVANEQVDIVLAYSTDSRLKAYQLQTLQ--DDQQFFPPYDAS 240
Query: 228 TVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
V+RSD L K P I + + + + K+ + V L+
Sbjct: 241 PVLRSDLLKKHPEIEDTIAPLIGHLDADTMISLNYQVDIEKKSEREVAIAYLKE 294
>gi|85705849|ref|ZP_01036945.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Roseovarius sp. 217]
gi|85669437|gb|EAQ24302.1| glycine betaine/proline ABC transporter, periplasmic
substrate-binding protein [Roseovarius sp. 217]
Length = 314
Score = 119 bits (297), Expect = 7e-25, Method: Composition-based stats.
Identities = 45/308 (14%), Positives = 90/308 (29%), Gaps = 24/308 (7%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP 65
A+ L ++ A S P++ A T T+ T + +L+ GY +
Sbjct: 7 ALALCAFALPVTAADLGKSDEPIKLALTQQTEAQITAHVAGELLKAA-GYTVEFVPVDDM 65
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV--GFAL 123
FR + ID + W + + E S+ + + LA
Sbjct: 66 AVFRQMGRGNIDANLEIWPANAAPSYRDMMMERSLVDLGDLGLSMTEGLAYPAHMETACP 125
Query: 124 GIKSYQDIAKYKKELGAKIYGIEP--GNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
G+ + + + G + L ASE A
Sbjct: 126 GLPALAALRDCATAFASDG-GAPVLIDYPTDWESPGADLMTALDLPFTASPAASEQALVD 184
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE------------------EISGFGE 223
+ N PA+ + W+PH + ++ ++ E G
Sbjct: 185 ALVSASTNGTPALAMFWQPHWAGAVHDLRFVDLPEAEAACYEDASWGPNPKAVGDCGVPS 244
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDL 283
S V + + P LL++ + + + +M + + + V + D
Sbjct: 245 LSAVKSVIKGFKTRWPAAYFLLEDFQITNETQAALMVAVARDGRPVADVAAEWAAANEDS 304
Query: 284 LKNWLIGV 291
+ + G
Sbjct: 305 WRPMVNGA 312
>gi|328956693|ref|YP_004374079.1| putative glycine/betaine/carnitine/choline ABC transporter,
substrate binding and membrane-spanning subunits
[Carnobacterium sp. 17-4]
gi|328673017|gb|AEB29063.1| putative glycine/betaine/carnitine/choline ABC transporter,
substrate binding and membrane-spanning subunits
[Carnobacterium sp. 17-4]
Length = 505
Score = 119 bits (297), Expect = 7e-25, Method: Composition-based stats.
Identities = 29/270 (10%), Positives = 74/270 (27%), Gaps = 16/270 (5%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGIDIFMG 81
+ A + M ++E+ ++ F +L++ IDI+
Sbjct: 232 DKEELVIAGKLGAEPEIIMNMYKYLIEDETDVAVTLEPNMGKTTFVFNALESGDIDIYTE 291
Query: 82 YWYPSLEKFIAPYLEEGSIKLVAENLQGA---KYMLAVNDVGFALGIKSYQDIAKYKKEL 138
Y L F+ L + + V + + +Y + + + + ++ +E
Sbjct: 292 YTGTILATFLNEELTSTNEQDVYQQARDGLADQYNMTLLEPMAFNNTYTLAVTSELAEEY 351
Query: 139 GAKIYGI------EPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI-RRDQRNNI 191
+ E D + + L ++
Sbjct: 352 QLETISDLVPIAEEIKAGFTLEFSDRQDGYLGIQDLYGLSFGEVQTMEPKLRYSAIETGD 411
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--K 249
+ ++ + ++ L + ++ ++ L++ P I L + K
Sbjct: 412 INLVDAYSTDSELAQYDLVVLEDDRGLF--PPYQGAPLLLNETLEEFPEIEDSLNQLSGK 469
Query: 250 FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+ A EM + V L
Sbjct: 470 ITDAEMREMNYAVNVTGASASDVALKYLTE 499
>gi|332561408|ref|ZP_08415721.1| glycine betaine transporter periplasmic subunit [Rhodobacter
sphaeroides WS8N]
gi|332273910|gb|EGJ19228.1| glycine betaine transporter periplasmic subunit [Rhodobacter
sphaeroides WS8N]
Length = 328
Score = 119 bits (297), Expect = 7e-25, Method: Composition-based stats.
Identities = 52/320 (16%), Positives = 94/320 (29%), Gaps = 34/320 (10%)
Query: 2 YKILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NI 59
+KI + + A D VR + + LE+ LGY
Sbjct: 4 FKIALSLMLSVAATPLLANDTPGEGVTVRPIMATQIEEFFQHRILFRALED-LGYSIAEP 62
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ + +L D W E F + + V ++GA V+
Sbjct: 63 QEVEYQTLHMALGAGDGDFSAVNWRSLHETFYQEAGGDEVLAKVGTLIEGALQGYLVDKK 122
Query: 120 GFALGIKSYQDIAKY--------KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
+ GI + + A + G PG + I ++
Sbjct: 123 TYDAGITDIGQLKDAEVAKKFDADGDGKADLAGCVPGWGCERVIEHQLDEYGLRDT-VTH 181
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHP----INSDLNIHYLPGGE----------- 216
+ + A + + +N P ++ +W P+ + ++ +L
Sbjct: 182 NQGAYQAMIADVMARYQNGEPVLYYTWTPYWVSGALVPGTDVEWLSVPYTSLPDGATGET 241
Query: 217 ----EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI---LNNKQDR 269
+ GF S+ V R D+L P +L + K + + K I NN D
Sbjct: 242 TFNAKNLGFAVDSIGVVARKDFLQANPAAEKLFEVAKIDIKDISTENKQITDGENNSSDI 301
Query: 270 QFVGRTMLRTHPDLLKNWLI 289
+ H D WL
Sbjct: 302 DRHVDAWIAAHRDEYDGWLA 321
>gi|116496057|ref|YP_807791.1| ABC-type proline/glycine betaine transport system, permease and
substrate binding protein [Lactobacillus casei ATCC 334]
gi|116106207|gb|ABJ71349.1| ABC-type proline/glycine betaine transport system, permease and
substrate binding protein [Lactobacillus casei ATCC 334]
Length = 510
Score = 119 bits (297), Expect = 7e-25, Method: Composition-based stats.
Identities = 25/277 (9%), Positives = 66/277 (23%), Gaps = 19/277 (6%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEI---LGYKTNIKLLAVPVTFRSLKNKGID 77
+ A ++ M ++++ +G + +L+ I
Sbjct: 229 ATAPKETITIAGKLGSEPDILINMYKELIQKADPDVGVTLKSNFGQTSFLYNALRTDKIG 288
Query: 78 IFMGYWYPSLEKFIAPYLEEGSIKLVAENLQG------AKYMLAVNDVGFALGIK----- 126
I+ + L P + ++ AK L+
Sbjct: 289 IYPEFSGTVLASLTKPSAAQQQQVTAGKDNYPLAKKLLAKQGLSYLKPMAYNNTYALVVK 348
Query: 127 -SYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
S+ + +D + K + L + S +
Sbjct: 349 ASFAKRYDLHTISDLGKIAPSIRAGFDLEFIDRQDGYKGIQSKYGLQFKVDSMDASLRYQ 408
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
+ + ++ L + + ++R+ + +K P + L
Sbjct: 409 ALDRGQINLTDGYTTDAQLRQYHLVALQDDKGLF--PIYRGAPLMRTAFAEKHPQLVAAL 466
Query: 246 KNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ + + M + + V L H
Sbjct: 467 NKLAGQITEKQMQTMNYAVSVKNEKAATVAHRYLVQH 503
>gi|172057764|ref|YP_001814224.1| substrate-binding region of ABC-type glycine betaine transport
system [Exiguobacterium sibiricum 255-15]
gi|171990285|gb|ACB61207.1| Substrate-binding region of ABC-type glycine betaine transport
system [Exiguobacterium sibiricum 255-15]
Length = 505
Score = 119 bits (297), Expect = 7e-25, Method: Composition-based stats.
Identities = 33/275 (12%), Positives = 88/275 (32%), Gaps = 33/275 (12%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGIDIFMGYWY 84
+ A + M +++E+ +K +++L++ ID++ +
Sbjct: 237 DLVVAGKLGVEPEILMNMYKLVIEDQTDLNVQVKPNFGKTTFVYKALQSGDIDLYPEFTG 296
Query: 85 PSLEKFIAPYLE----------------EGSIKLVAENLQGAKYMLAVNDVGFALG-IKS 127
L + + L+ Y +AV +K+
Sbjct: 297 TVLASLTNEKPVSNDKQAVFEQARDGLAKQKLALLPPMNYNNTYAVAVPKKVADQYQLKT 356
Query: 128 YQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI-RRD 186
D+ + +L D + K + + + + ++ +
Sbjct: 357 ISDLQQVADQLK---------AGFTLEFKDRQDGYKGIQEKYGVNFKEVVTMEPKLRYKA 407
Query: 187 QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLK 246
++ V ++ P + N+ L +++ ++R + LD+ P + + LK
Sbjct: 408 VQSGDIQVIDAYSTDPEIAKYNMVVLEDDQQLF--PPYEGAPLLRQETLDEYPEVEQALK 465
Query: 247 NI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+ K S + ++M + + + V R L+
Sbjct: 466 QLNGKISDSEMSKMNEAVAYGGKTANQVARDYLQK 500
>gi|282917800|ref|ZP_06325550.1| osmoprotectant transport system substrate-binding protein
[Staphylococcus aureus subsp. aureus D139]
gi|283767531|ref|ZP_06340446.1| osmoprotectant transport system substrate-binding protein
[Staphylococcus aureus subsp. aureus H19]
gi|282318085|gb|EFB48445.1| osmoprotectant transport system substrate-binding protein
[Staphylococcus aureus subsp. aureus D139]
gi|283461410|gb|EFC08494.1| osmoprotectant transport system substrate-binding protein
[Staphylococcus aureus subsp. aureus H19]
Length = 313
Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats.
Identities = 27/289 (9%), Positives = 73/289 (25%), Gaps = 27/289 (9%)
Query: 13 TFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL----LAVPVTF 68
S+ + V+ ++ + M +++E K L + +
Sbjct: 20 GCSLPGLGSKSTKNDVKITALSTSESQIISHMLRLLIEHDTHGKIKPTLVNNLGSSTIQH 79
Query: 69 RSLKNKGIDIF-MGYWYPSLEKFIAPYL--------------EEGSIKLVAENLQGAKYM 113
+L N+ +I + Y L + + + G
Sbjct: 80 NALINRDANISGVRYNGTDLTGVLKEAPIKDPKKAMIATQQGFKKKFDQTFFDSYGFANT 139
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
A + ++ K G++ + ++ +
Sbjct: 140 YAFMVTKETAKKYHLETVSDLAKHSKDLRLGMDSSWMNRKGDGYEGFKKEYGFDFGTVRP 199
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+ + V L + + ++ L + F + V ++
Sbjct: 200 ----MQIGLVYDALNSEKLDVALGYSTDGRIAAYDLKVLKD--DKQFFPPYAASAVATNE 253
Query: 234 YLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
L + P + + + K S + + ++ V L+ H
Sbjct: 254 LLRQHPELKTTINKLTGKISTSEMQRLNYEADGKGKEPAVVAEEFLKKH 302
>gi|83815988|ref|YP_446572.1| transmembrane protein [Salinibacter ruber DSM 13855]
gi|83757382|gb|ABC45495.1| transmembrane protein [Salinibacter ruber DSM 13855]
Length = 507
Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats.
Identities = 32/290 (11%), Positives = 75/290 (25%), Gaps = 24/290 (8%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILE-EILGYKTNI 59
++ L + + + + A+ + + + +T+ M + ++ E L
Sbjct: 13 IFSALLSIFVVLSLAAAPAQGQATDSTLALGSKKFTENVILGWMGTHLIRAEGLTATHRE 72
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEE----------GSIKLVAENLQG 109
+L + +L+ ID + Y ++ +A I + A
Sbjct: 73 ELGGSRFLWEALRRGDIDAYPEYTGTLRQELLADVDIAPGALADTLARYGIAMTAPLGFN 132
Query: 110 AKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
Y L + A + IA + + + + +
Sbjct: 133 NTYALGMRADQAAA--LGIESIADLQDHPDLRFGFTNEFMDRSDGWPSLRRAYDLPQSAR 190
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV 229
L R N V + ++ L ++ +
Sbjct: 191 GLDHDI-------AYRGLANGEIDVIDLYSTDAKIEQYDLRVLEDNKDHF--PAYEALFL 241
Query: 230 VRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
R D + P LK + + + ++ D V L
Sbjct: 242 YRRDLATRAPAAVTALKRLAGQIPADTMQRLNARSNIDQTDEATVAADFL 291
>gi|89095406|ref|ZP_01168320.1| hypothetical ABC transporter, substrate binding protein
[Oceanospirillum sp. MED92]
gi|89080344|gb|EAR59602.1| hypothetical ABC transporter, substrate binding protein
[Oceanospirillum sp. MED92]
Length = 216
Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats.
Identities = 28/223 (12%), Positives = 61/223 (27%), Gaps = 36/223 (16%)
Query: 114 LAVNDVG--FALGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINNNKF 164
V + + + + K K YG G ++ K
Sbjct: 1 FWVPAYMVKEDPSLATIEGVKKNAKLFEHPEDPEMSAFYGCPAGWNCQISAGNLFKALKL 60
Query: 165 SLKGFRLI-EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS---- 219
GF +I S I + P W P + + + G ++
Sbjct: 61 ENSGFEMIDPGSGAGLSGAIAKAYERKEPWFGYYWAPTSVLGKYEMVKVDFGTGVNEEHH 120
Query: 220 ---------------GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILN 264
+ + V TV + + P L N F+ N ++ + +
Sbjct: 121 LECITNEECLDPKPGMYPPSVVQTVTTEKFASESPKAYEYLANRSFTNKEMNGLLAWMED 180
Query: 265 NKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
N+ D + + H + W+ + + +++ +
Sbjct: 181 NQADGEVAMEYFIEEHEAIWTRWVA-------PEIAEKVKAAL 216
>gi|326693159|ref|ZP_08230164.1| glycine betaine/carnitine/choline ABC transporter, substratebinding
and permease protein [Leuconostoc argentinum KCTC 3773]
Length = 508
Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats.
Identities = 33/283 (11%), Positives = 77/283 (27%), Gaps = 35/283 (12%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILE---EILGYKTNIKLLAVPVTFRSLKNKGIDI 78
A+ + A ++ M ++E E + F +LKN +DI
Sbjct: 230 ANRVETITIAGKLGSEPEILINMYKQLIEAEDEHVHVTLKPNFGKTTFLFSALKNNQVDI 289
Query: 79 FMGYWYP------------------SLEKFIAPYLEEGSIKLVAENLQGAKYMLAV-NDV 119
+ + + + ++ + + Y LAV
Sbjct: 290 YPEFTGSVLETLGNGNNPAGQTANQTYQLAKQRLAKQEQMTYLRPMQYNNTYALAVTKKF 349
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+K+ D+ + + L + + N + + ++
Sbjct: 350 QQEHHLKTISDLTQVESILKPGMTL--EFIDRNDGLKGIKKTYGLD-------VTAKSME 400
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+ + ++ ++ L F ++++ + +K P
Sbjct: 401 PALRYEAISKGKINLVDAYATDSELRQYHLALLKD--NKHFFPTYQGAPLMKTSFANKHP 458
Query: 240 NISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ + L + K S EM + KQ V L H
Sbjct: 459 KVVKALNKLAGKISETDMQEMNYEVNVKKQSASTVAHRYLVKH 501
>gi|110634872|ref|YP_675080.1| glycine betaine transporter periplasmic subunit [Mesorhizobium sp.
BNC1]
gi|110285856|gb|ABG63915.1| Substrate-binding region of ABC-type glycine betaine transport
system [Chelativorans sp. BNC1]
Length = 342
Score = 118 bits (296), Expect = 9e-25, Method: Composition-based stats.
Identities = 35/311 (11%), Positives = 79/311 (25%), Gaps = 45/311 (14%)
Query: 22 ADSCTPVRFADTGWTDI-AATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFM 80
V +A + + + LE+ LGY + + + F + K +D+
Sbjct: 28 PGDGKTVHYAQSDSVGANYIVAEIVTEALEQ-LGYSVTMTTINTTLFFPAAARKDLDLAT 86
Query: 81 GYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKK---- 136
+P E ++ + G ++ + + K K
Sbjct: 87 DVNFPQREPIFRQVEDKVQLIGKGLIQGGGINGYLIDKKTADEYGITSLEQMKDPKIAAL 146
Query: 137 ---ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPA 193
A + +PG + + + + P
Sbjct: 147 FGTNGKADLINCDPGWSCGDVVEYQLKEFGLQDT-VNSVRGKYDTLMVETIARVNRGEPV 205
Query: 194 VFLSWEPHPINSDLNI----HYLPGGEEI---------------------------SGFG 222
F +W P IN L +LP +
Sbjct: 206 FFYTWSPSWINKALEPGEKVVWLPTPFDALPPDVPNAGSALVPGVKGCAGGADPCRMAMA 265
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQD----RQFVGRTMLR 278
+ +V D++ + P++ L+ + F + + I + +
Sbjct: 266 AWNWNSVANKDFIKENPSVEALISEMSFPLETWSAWEVGISEQGGSTPRAIREAAEKWIS 325
Query: 279 THPDLLKNWLI 289
+ + + WL
Sbjct: 326 ENKETFEGWLA 336
>gi|162455353|ref|YP_001617720.1| putative ABC-transporter [Sorangium cellulosum 'So ce 56']
gi|161165935|emb|CAN97240.1| putative ABC-transporter [Sorangium cellulosum 'So ce 56']
Length = 507
Score = 118 bits (296), Expect = 9e-25, Method: Composition-based stats.
Identities = 33/306 (10%), Positives = 75/306 (24%), Gaps = 38/306 (12%)
Query: 2 YKILAVCLFLTTFSISYARDA--------DSCTPVRFADTGWTDIAATTAMTSVILEEIL 53
+++ +CL +A D + +T+ + + +E +
Sbjct: 209 RRLVLLCLGGFAGLAVFAATPVVRALLARDDQVSITVGAKTFTEQYILAGIVAGRIERVA 268
Query: 54 GYKT-NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIA-----------------PYL 95
G + L V F +LK+ ID+++ Y + L
Sbjct: 269 GVPARTLGSLGSTVVFDALKSGEIDVYVDYSGTLWANVLRRSTESADRASVLATVERELL 328
Query: 96 EEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRI 155
+ + + A Y LA+ + I+ + G +
Sbjct: 329 DRYDVHVAAALGFENTYALAMPR--AEAEWLGIRRISDLGARARSLRVGGDYEIFQRSEW 386
Query: 156 LDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG 215
+ + + + S + R V ++ ++ L
Sbjct: 387 RAIERVYGLAFRE------ARSMDPSLLYEALRAEQVDVITAFSTDGRIIADDLVLLEDD 440
Query: 216 EEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVG 273
+V P + L+ + +M + K V
Sbjct: 441 RRA--IPPYDALVLVSDRLARTRPEVLEALRGLSGTIDARKMRQMNAAVDEKKGSPAAVA 498
Query: 274 RTMLRT 279
L
Sbjct: 499 ARFLDE 504
>gi|323466569|gb|ADX70256.1| Glycine/betaine ABC superfamily ATP binding cassette transporter
substrate binding protein [Lactobacillus helveticus H10]
Length = 307
Score = 118 bits (296), Expect = 9e-25, Method: Composition-based stats.
Identities = 34/279 (12%), Positives = 91/279 (32%), Gaps = 32/279 (11%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL-AVPVTFRSLKNKGIDIFMG 81
S +P+ +T+ + + L++ GY K + V ++++K+ +D++
Sbjct: 39 QSKSPITIGSKNFTESKIVMQIYTDALKKA-GYNVKTKPNISSSVVYQAIKSGQVDLYPE 97
Query: 82 YWYPSLEKFIAPY----------------LEEGSIKLVAENLQGAKYMLAVNDVGFALG- 124
Y ++ + + + ++ + +A+
Sbjct: 98 YTGTIAMTYLKKHIVGKTPAQIAAIAKEGVAKENLTTLNYAPGSDAQGIAIKTSVAKKYG 157
Query: 125 IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI- 183
IK+ D+ K ++ G ++ I + + SE +
Sbjct: 158 IKTISDLQKKANKIRFASQG--EFDKREDGIPGLEKAYG------KFNFKSEKIYDPSLK 209
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
+ + + + + L + + + ++ +VR L P I +
Sbjct: 210 YKVLARGDGDITPASTTEGQLATKDFFALKD--DKNFWPAYNLVPLVREKTLKDNPGIKK 267
Query: 244 LLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+L I KF+ + K + + + Q V + L+ +
Sbjct: 268 ILNKIDAKFTTKELTLLNKKVDVDGESYQAVAKEWLKNN 306
>gi|153836315|ref|ZP_01988982.1| ABC superfamily [Vibrio parahaemolyticus AQ3810]
gi|260901014|ref|ZP_05909409.1| glycine betaine ABC transporter, glycine betaine-binding protein
[Vibrio parahaemolyticus AQ4037]
gi|149750590|gb|EDM61335.1| ABC superfamily [Vibrio parahaemolyticus AQ3810]
gi|308110736|gb|EFO48276.1| glycine betaine ABC transporter, glycine betaine-binding protein
[Vibrio parahaemolyticus AQ4037]
Length = 335
Score = 118 bits (296), Expect = 9e-25, Method: Composition-based stats.
Identities = 38/325 (11%), Positives = 92/325 (28%), Gaps = 39/325 (12%)
Query: 2 YKILAVCLFLTTFSIS---YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
K L+V + + V+ + + T + + LE LGY
Sbjct: 6 KKALSVGALSAIAFSTYGIAGELPGAGVAVQPVQSTVAEETFQTLIVNRALEA-LGYDVQ 64
Query: 59 -IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
K + V + S+ W+P + + + GA ++
Sbjct: 65 PTKEVDYNVGYTSIAKGDATFLAVGWFPLHADKYTMSGGDDKFFREGQYVSGAAQGYLID 124
Query: 118 DVGFALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
+ + + A + G PG + ++ K
Sbjct: 125 KKTAEKYGITNIGQLKDPKLAKLFDANGDGKADLTGCNPGWGCEMVVEHQLDAFKLRDT- 183
Query: 169 FRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP----INSDLNIHYLPGGE-------- 216
+ + A + + P ++ +W P+ + ++ +L
Sbjct: 184 VTHNQGNYAAIIADTISRYKKGDPILYYTWTPYWVSGVLVPGKDVVWLEVPFSSLPGERK 243
Query: 217 ---------EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQ 267
+ GF S+ V ++ K P+ ++L + IK ++ + ++ K
Sbjct: 244 DIDTTLKNGKNYGFEMNSMRIVANKEFTKKNPSAAKLFEIIKLNINDVSAQNMMMSQGKN 303
Query: 268 DRQFV---GRTMLRTHPDLLKNWLI 289
+ ++ + W+
Sbjct: 304 SAADIEAHVNGWIKANQTTFDGWIE 328
>gi|258592742|emb|CBE69051.1| putative glycine betaine/carnitine/choline ABC transporter
(permease and substrate binding protein) [NC10 bacterium
'Dutch sediment']
Length = 514
Score = 118 bits (296), Expect = 9e-25, Method: Composition-based stats.
Identities = 30/297 (10%), Positives = 79/297 (26%), Gaps = 28/297 (9%)
Query: 2 YKILAVCLFLTTFSISYARDADS-CTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-- 58
+ + LT + + + V +++ + + ++E+
Sbjct: 220 RTLTVAGIALTLIVMGGYAVSGRWDSRVIIGSKNFSEQVILGELLAQVIEQTTDLSVERR 279
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP---------------YLEEGSIKLV 103
+ L ++ ++L++ ID ++ Y +L ++
Sbjct: 280 LNLGGTFISDQALQSGAIDAYVEYTGTALTAIFHQPVLRDHADVLERVTAAYAATGRTVL 339
Query: 104 AENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK 163
+ + + + + A +G E E ++
Sbjct: 340 SPLGFNNTFAILIRAADAQRLNLTTISDAAPHTPGWKAAFGYE-FLEREDGYKGLVRTYG 398
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
R E + + R + + L++ L
Sbjct: 399 L-----RFAETPHVMDLTLSYRALAGGSVDLIAGEATSGLIKGLDLTMLEDDRRYF--PP 451
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
VVR++ L P + ++ + + S M + + +D V R L
Sbjct: 452 YHAIPVVRTETLADYPELRTAIERLAGRISETSMRRMNYDVDVSHRDVAVVAREFLD 508
>gi|13471881|ref|NP_103448.1| hypothetical protein mlr1996 [Mesorhizobium loti MAFF303099]
gi|14022625|dbj|BAB49234.1| mlr1996 [Mesorhizobium loti MAFF303099]
Length = 322
Score = 118 bits (296), Expect = 9e-25, Method: Composition-based stats.
Identities = 48/316 (15%), Positives = 97/316 (30%), Gaps = 32/316 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
L V L + + R + + A W+ AT + V L++ G +
Sbjct: 6 KLALKVALAASVLVLGGIRTHAAD--LVIAMPNWSSGQATANILKVGLKKEFGLDAEVVE 63
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ + F L + +DI W P+L+ + Y+ + ++ A + N
Sbjct: 64 MGTMIAFAGLDSGQVDIHPEVWLPNLDTLVKKYVTQAGTVAISPIGVPAWQGICANRTAA 123
Query: 122 ALGI---KSYQDIAKYKKELGAKIYGIEPGN----EGNQRILDMINNNKFS-LKGFRLIE 173
S K + L G + ++ I N + + L+E
Sbjct: 124 DKYGFKDISDLSDPKKTEALDTDGDGKGEMWIGAQTWSSTTIERIRANSYGYARNLTLLE 183
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE---------------- 217
E + + + ++ P VF + PH + +I L
Sbjct: 184 MPEDVGMAAVDAAEASDRPMVFACYAPHVVFKLHDIVRLTEPPYDAAKWKIVLPTEDPQW 243
Query: 218 ------ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQF 271
G+ A + + K P + R L+++ F M + +Q
Sbjct: 244 LAKSQAAVGWDTAHYHIAYATSLRKKHPEVVRFLEHVDFKPEEAIAMSYALQVERQAPYA 303
Query: 272 VGRTMLRTHPDLLKNW 287
+ T+ ++ W
Sbjct: 304 YAEQWVATNAARVEGW 319
>gi|28377282|ref|NP_784174.1| glycine betaine/carnitine/choline ABC transporter, substrate
binding and permease protein [Lactobacillus plantarum
WCFS1]
gi|28270113|emb|CAD63013.1| glycine betaine/carnitine/choline ABC transporter, substrate
binding and permease protein [Lactobacillus plantarum
WCFS1]
Length = 508
Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 35/283 (12%), Positives = 78/283 (27%), Gaps = 35/283 (12%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILE---EILGYKTNIKLLAVPVTFRSLKNKGIDI 78
A+ + A ++ M ++E E + F +LKN +DI
Sbjct: 230 ANRVETITIAGKLGSEPEILINMYKQLIEAEDEHVHVTLKPNFGKTTFLFSALKNNQVDI 289
Query: 79 FMGYWYPSLEKFIA------------------PYLEEGSIKLVAENLQGAKYMLAV-NDV 119
+ + LE + ++ + + Y LAV
Sbjct: 290 YPEFTGSVLETLVKGNNPAGQTANQTYQLAKQRLAKQEQMTYLKPMQYNNTYALAVTKKF 349
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+K+ D+ + + L + + N + + ++
Sbjct: 350 QQEHHLKTISDLTQVESILKPGMTL--EFIDRNDGLKGIKKTYGLD-------VTAKSME 400
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+ + ++ ++ L F ++++ + +K P
Sbjct: 401 PALRYEAISKGKINLVDAYATDSELRQYHLALLKD--NKHFFPTYQGAPLMKTSFANKHP 458
Query: 240 NISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ + L + K S EM + KQ V L H
Sbjct: 459 KVVKALNKLAGKISETDMQEMNYEVNVKKQSASTVAHRYLVKH 501
>gi|168229876|ref|ZP_02654934.1| glycine betaine/carnitine/choline-binding protein [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
gi|194472132|ref|ZP_03078116.1| substrate-binding region of ABC-type glycine betaine transport
system [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|194458496|gb|EDX47335.1| substrate-binding region of ABC-type glycine betaine transport
system [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|205335561|gb|EDZ22325.1| glycine betaine/carnitine/choline-binding protein [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
Length = 300
Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 37/304 (12%), Positives = 87/304 (28%), Gaps = 37/304 (12%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
K L L T + + A P+ A +T+ +AMT L++ G++ +
Sbjct: 4 KKHLLGWLAATLLFSNQTQAA----PLVLATKSFTEQHILSAMTVQYLQKK-GFQVQPQT 58
Query: 62 LAVPVT-FRSLKNKGIDIFMGYWYPS---------------LEKFIAPYLEEGSIKLVAE 105
V ++ NK IDI Y S + + + +
Sbjct: 59 NIAAVISRNAMVNKQIDITWEYTGTSLIIFNRIDKRMSPQETYDTVKRLDAKLGLVWLKP 118
Query: 106 NLQGAKYMLAVNDVGFALGIKSY--------QDIAKYKKELGAKIYGIEPGNEGNQRILD 157
Y A+ + + + + + + + +
Sbjct: 119 ADMNNTYAFAMQRKRAESENITTISQMVAKIEQVRQNDPDHNWMLGLDLEFAGRSDGMKP 178
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
+ + L ++ + + R+ + L + ++ L +
Sbjct: 179 LQQAYQMQLDRPQIRQMDPG----LVYNAVRDGLVDAGLVYTTDGRVKGFDLKVLEDDKG 234
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRT 275
+V VVR + L+ P + L + + + + + + + Q V
Sbjct: 235 FF--PSYAVTPVVRKEVLEANPGLDDALNTLSGLLNNDVISTLNAQVDIEHRTPQQVAHQ 292
Query: 276 MLRT 279
L+
Sbjct: 293 FLQD 296
>gi|84385207|ref|ZP_00988239.1| glycine betaine-binding protein [Vibrio splendidus 12B01]
gi|84379804|gb|EAP96655.1| glycine betaine-binding protein [Vibrio splendidus 12B01]
Length = 255
Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 42/253 (16%), Positives = 87/253 (34%), Gaps = 3/253 (1%)
Query: 30 FADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEK 89
T + T ++ + +L+ +G++ F LK +D+ W PS
Sbjct: 1 MGVTDLSFHRTTASLVANVLKA-MGFEVERIFSPHQENFEKLKAGQVDMLSSAWLPSSHG 59
Query: 90 FIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAK--YKKELGAKIYGIEP 147
+EE + + V D + D+ K +++ + I GI P
Sbjct: 60 IYKAGVEEVEPLIELGLHYEPYALWGVPDYVPEEAVSEISDLLKAEVIEKMNSTIQGINP 119
Query: 148 GNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDL 207
G + + M+ + S G+ SE FS N + W+P ++
Sbjct: 120 GAGITRFSIQMMKDYGLSDAGYEFFPGSEDDCFSAFESAVANKEWVIVPLWKPQFLHYRY 179
Query: 208 NIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQ 267
+I L + + G + +V + + L +++FS + E+ + +
Sbjct: 180 DIRELKEPKGLLGIVDRAVLLLRDDKKHLFSEQQIQKLDSLRFSNDIIAELDYKVCREGK 239
Query: 268 DRQFVGRTMLRTH 280
+ V L +
Sbjct: 240 SQDQVTHDWLIEN 252
>gi|322435962|ref|YP_004218174.1| Substrate-binding region of ABC-type glycine betaine transport
system [Acidobacterium sp. MP5ACTX9]
gi|321163689|gb|ADW69394.1| Substrate-binding region of ABC-type glycine betaine transport
system [Acidobacterium sp. MP5ACTX9]
Length = 290
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 35/272 (12%), Positives = 72/272 (26%), Gaps = 26/272 (9%)
Query: 28 VRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGIDIFMGYWYP 85
+ +T+ + + +E K + + + ++L + ID + Y
Sbjct: 24 ITIGAKNFTEQVVLGELLAQQIEAETHQKVDRRFYLAGSYLCHQALVSGRIDAYPEYTGT 83
Query: 86 SLEKFIAP--------------YLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDI 131
+L + L E + E G A+ G ++ I
Sbjct: 84 ALTAILKQPLDRDPARVDETITRLYEDRFHIKVEPSLGFNDTFAMVVRGADAEKHHWKTI 143
Query: 132 AKYKKELGAKIYGIEPGNEGN-QRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
+ G+ + + + + + + R +N
Sbjct: 144 SDVLPVASTLRLGVGYEFQARPDGLDGLQSTYGL-----HFGARPRVMDLGLLYRSLASN 198
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI-- 248
+ L L + F +VR D L P I + +
Sbjct: 199 QVDIVAGNSTDGPIKALGFRILED--DRHYFPPYEAVPLVREDSLAAHPEIQTAMNKLAG 256
Query: 249 KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
K + +M + QD V R +TH
Sbjct: 257 KITAEQMQQMNDQVDGKHQDVAEVVRHFRQTH 288
>gi|260769405|ref|ZP_05878338.1| L-proline glycine betaine binding ABC transporter protein
proX/osmotic adaptation [Vibrio furnissii CIP 102972]
gi|260614743|gb|EEX39929.1| L-proline glycine betaine binding ABC transporter protein
proX/osmotic adaptation [Vibrio furnissii CIP 102972]
gi|315181936|gb|ADT88849.1| ABC superfamily (glycine/betaine/proline transport protein) [Vibrio
furnissii NCTC 11218]
Length = 327
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 38/320 (11%), Positives = 97/320 (30%), Gaps = 36/320 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLL 62
+ T + ++A+ V+ + + T + + +E LGY K +
Sbjct: 3 TTGLVAGTTLSASAWAKLPGDGITVQPVQSTVAEETFQTLIVNKAMEA-LGYTVLPTKEV 61
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
V + S+ W P E + + + GA ++
Sbjct: 62 DYNVGYTSISEGDATYLAVNWAPLHEGKYIAAGGDSKFYRKGDYIAGAAQGYLIDKKTAD 121
Query: 123 LGIKSYQD---------IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+ + + + A + G PG + ++ +
Sbjct: 122 QYHITNIEQLKDPKIAKLFDANDDGKADLTGCNPGWGCESVVEHQMDAFGLRDT-VTHNQ 180
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHP----INSDLNIHYLPGGE------------- 216
+ A + + ++ +W P+ + ++ +L
Sbjct: 181 GNYAAIIADTISRYKKGDSILYYTWTPYWVSGVLVPGKDVVWLEVPFSSLPGDRKDIDTT 240
Query: 217 ----EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENE---MMKLILNNKQDR 269
+ GF S+ V + ++ P ++L + +K ++ + MM N+++D
Sbjct: 241 LPNGKNYGFQMNSMKIVANKQFAEQNPAAAKLFEIMKLNINDVSAENMMMSQGHNSEKDI 300
Query: 270 QFVGRTMLRTHPDLLKNWLI 289
+ ++ H L +W+
Sbjct: 301 EAHANGWIKAHQKLFDSWVA 320
>gi|229553044|ref|ZP_04441769.1| glycine betaine ABC superfamily ATP binding cassette transporter,
binding protein [Lactobacillus rhamnosus LMS2-1]
gi|258540344|ref|YP_003174843.1| glycine betaine/carnitine ABC transporter substrate-binding
lipoprotein [Lactobacillus rhamnosus Lc 705]
gi|229313541|gb|EEN79514.1| glycine betaine ABC superfamily ATP binding cassette transporter,
binding protein [Lactobacillus rhamnosus LMS2-1]
gi|257152020|emb|CAR90992.1| ABC transporter, glycine/betaine/carnitine substrate-binding
lipoprotein [Lactobacillus rhamnosus Lc 705]
Length = 300
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 33/163 (20%), Positives = 66/163 (40%), Gaps = 2/163 (1%)
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
++ I GI+ G + K ++L +S A S +++ + P V
Sbjct: 38 PQINYTITGIDAGAGIMSSTDKALKAYGLEQKNWQLQPSSTAAMTSTLQKAIADKRPIVV 97
Query: 196 LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
W PH + + + +L + + G E ++T+VR P ++L ++
Sbjct: 98 TGWTPHWMFTKFPLKFLKDPKNVYGKAE-QIHTIVRKGLKQDAPQAYQVLDQFHWTPKEI 156
Query: 256 NEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
+ +M + NN QD + ++ HP+ + W GV+ G
Sbjct: 157 SSVMLAV-NNGQDPAAAAKAYVKKHPEQIAQWTKGVSHVSGSP 198
Score = 57.9 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/98 (19%), Positives = 39/98 (39%), Gaps = 2/98 (2%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPS 86
+ W A+T + + +L + +GYK I+ + + S+ K D + W P+
Sbjct: 199 KLTLTYIAWDSEIASTNVVATVLRQ-VGYKVTIRAMEPQPVWASVATKAADAQVSAWLPN 257
Query: 87 LEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
+ + + + N+ GA+ LAV +
Sbjct: 258 TAAKLY-ADYKNQVVDLGVNMDGARVGLAVPKYMKNIN 294
>gi|183393124|gb|ACC61724.1| putative glycine/betaine/carnitine ABC transporter substrate
binding lipoprotein precursor [Lactobacillus rhamnosus
HN001]
Length = 288
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 33/163 (20%), Positives = 66/163 (40%), Gaps = 2/163 (1%)
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
++ I GI+ G + K ++L +S A S +++ + P V
Sbjct: 38 PQINYTITGIDAGAGIMSSTDKALKAYGLEEKNWQLQPSSTAAMTSTLQKAIADKRPIVV 97
Query: 196 LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
W PH + + + +L + + G E ++T+VR P ++L ++
Sbjct: 98 TGWTPHWMFTKFPLKFLKDPKNVYGKAE-QIHTIVRKGLKQDAPQAYQVLDQFHWTPKEI 156
Query: 256 NEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
+ +M + NN QD + ++ HP+ + W GV+ G
Sbjct: 157 SSVMLAV-NNGQDPAAAAKAYVKKHPEQIAQWTKGVSHVSGSP 198
Score = 55.2 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPS 86
+ W A+T + + +L + +GYK I+ + + S+ K D + W P+
Sbjct: 199 KLTLTYIAWDSEIASTNVVATVLRQ-VGYKVTIRAMEPQPVWASVATKAADAQVSAWLPN 257
Query: 87 LEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ + + + N+ GA+ LAV
Sbjct: 258 TAAKLY-ADYKNQVVDLGVNMDGARVGLAVPK 288
>gi|227431539|ref|ZP_03913580.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Leuconostoc mesenteroides subsp. cremoris ATCC 19254]
gi|296110190|ref|YP_003620571.1| glycine betaine/carnitine/choline ABC transporter, substratebinding
and permease protein [Leuconostoc kimchii IMSNU 11154]
gi|227352708|gb|EEJ42893.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Leuconostoc mesenteroides subsp. cremoris ATCC 19254]
gi|295831721|gb|ADG39602.1| glycine betaine/carnitine/choline ABC transporter, substratebinding
and permease protein [Leuconostoc kimchii IMSNU 11154]
Length = 508
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 33/283 (11%), Positives = 77/283 (27%), Gaps = 35/283 (12%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILE---EILGYKTNIKLLAVPVTFRSLKNKGIDI 78
A+ + A ++ M ++E E + F +LKN +DI
Sbjct: 230 ANRVETITIAGKLGSEPEILINMYKQLIEAEDEHVHVTLKPNFGKTTFLFSALKNNQVDI 289
Query: 79 FMGYWYP------------------SLEKFIAPYLEEGSIKLVAENLQGAKYMLAV-NDV 119
+ + + + ++ + + Y LAV
Sbjct: 290 YPEFTGSVLETLGKGNNPAGQTANQTYQLAKQRLAKQEQMTYLKPMQYNNTYALAVTKKF 349
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+K+ D+ + + L + + N + + ++
Sbjct: 350 QQEHHLKTISDLTQVESILKPGMTL--EFIDRNDGLKGIKKTYGLD-------VTAKSME 400
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+ + ++ ++ L F ++++ + +K P
Sbjct: 401 PALRYEAISKGKINLVDAYATDSELRQYHLALLKD--NKHFFPTYQGAPLMKTSFANKHP 458
Query: 240 NISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ + L + K S EM + KQ V L H
Sbjct: 459 KVVKALNKLAGKISETDMQEMNYEVNVKKQSASTVAHRYLVKH 501
>gi|293567791|ref|ZP_06679132.1| glycine betaine/carnitine/choline-binding protein [Enterococcus
faecium E1071]
gi|291589376|gb|EFF21183.1| glycine betaine/carnitine/choline-binding protein [Enterococcus
faecium E1071]
Length = 305
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 30/302 (9%), Positives = 74/302 (24%), Gaps = 31/302 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M IL+ L L + S + ++ ++ + ++E T I
Sbjct: 7 MTMILSSLLILASCSFPGLASNTDEDTISITGGITSEAQILASLVAGMVEHYTDKNTAII 66
Query: 61 L--LAVPVTFRSLKNKGIDIFMGYWYPS-----------------LEKFIAPYLEEGSIK 101
+ +++ N I + + + +
Sbjct: 67 NNLATTTINHQAMMNGDASISAARYTGTDLTTTLNLPPEKDPKKAFATVKDEFEKRYDQT 126
Query: 102 LVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINN 161
Y+ V S ++ K + G++ + +
Sbjct: 127 WFPSYGFENTYVFLVRKDTAQKYHLS--KVSDLKNVADELVAGVDTSWINRKG-----DG 179
Query: 162 NKFSLKGFRLIEASE-LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISG 220
+ + S + + L + + ++ L +
Sbjct: 180 YDGFQETYGFSFNSILPMQIGLVYDAVEAGKMDIVLGYSTDGRIASYDLVMLEDDRQFF- 238
Query: 221 FGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
VV + L P++ L + S E+ NN + V + L+
Sbjct: 239 -PPYDAAPVVDNKILADTPHLKEALNKLGHTISTEKMQELNYEADNNLVEPSVVAQRFLQ 297
Query: 279 TH 280
+
Sbjct: 298 EN 299
>gi|199597437|ref|ZP_03210867.1| Putative glycine/betaine/carnitine ABC transporter, substrate
binding lipoprotein precursor [Lactobacillus rhamnosus
HN001]
gi|199591697|gb|EDY99773.1| Putative glycine/betaine/carnitine ABC transporter, substrate
binding lipoprotein precursor [Lactobacillus rhamnosus
HN001]
Length = 300
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 33/163 (20%), Positives = 66/163 (40%), Gaps = 2/163 (1%)
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
++ I GI+ G + K ++L +S A S +++ + P V
Sbjct: 38 PQINYTITGIDAGAGIMSSTDKALKAYGLEEKNWQLQPSSTAAMTSTLQKAIADKRPIVV 97
Query: 196 LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
W PH + + + +L + + G E ++T+VR P ++L ++
Sbjct: 98 TGWTPHWMFTKFPLKFLKDPKNVYGKAE-QIHTIVRKGLKQDAPQAYQVLDQFHWTPKEI 156
Query: 256 NEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
+ +M + NN QD + ++ HP+ + W GV+ G
Sbjct: 157 SSVMLAV-NNGQDPAAAAKAYVKKHPEQIAQWTKGVSHVSGSP 198
Score = 57.9 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/98 (19%), Positives = 39/98 (39%), Gaps = 2/98 (2%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPS 86
+ W A+T + + +L + +GYK I+ + + S+ K D + W P+
Sbjct: 199 KLTLTYIAWDSEIASTNVVATVLRQ-VGYKVTIRAMEPQPVWASVATKAADAQVSAWLPN 257
Query: 87 LEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
+ + + + N+ GA+ LAV +
Sbjct: 258 TAAKLY-ADYKNQVVDLGVNMDGARVGLAVPKYMKNIN 294
>gi|330821335|ref|YP_004350197.1| ABC glycine betaine/choline/proline family transporter, periplasmic
ligand binding protein [Burkholderia gladioli BSR3]
gi|327373330|gb|AEA64685.1| ABC glycine betaine/choline/proline family transporter, periplasmic
ligand binding protein [Burkholderia gladioli BSR3]
Length = 307
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 43/298 (14%), Positives = 84/298 (28%), Gaps = 30/298 (10%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL-AV 64
A+ + LT + A + + +T+ +TS L GY +
Sbjct: 14 ALAVVLTASLGALASAPAAAQALTVGGKNFTEQYVLAEITSQYLRAR-GYTIQSRTGLGS 72
Query: 65 PVTFRSLKNKGIDIFMGYWYPS---------------LEKFIAPYLEEGSIKLVAENLQG 109
+ +L+N ID+ Y + + + + + + +
Sbjct: 73 VLLRSALENGQIDVMWDYTGTAALVYDKIKEKLPPDEMYRRVKAIDARRGLVWLDASPLN 132
Query: 110 AKYMLAVNDVGFAL-GIKSYQDIAKYKKELG----AKIYGIEPGNEGNQRILDMINNNKF 164
Y LA+ GI++ +A + +
Sbjct: 133 NTYALALPAETARKTGIRTISQLAAKIAADPKGTRHTFGMDAEFANRPDGLKPLEAAYHL 192
Query: 165 SLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEA 224
+ + + RNN + L + I L ++ F
Sbjct: 193 NFSRSETKQMDSG----LVYTALRNNQLTIGLVYTTDGRVKGFGIVPLED--DLHFFPPY 246
Query: 225 SVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ VVR L P ++ L + + + EM K + + Q V LRTH
Sbjct: 247 NATPVVREPVLKAHPRLAVQLNALSAALNNDVMLEMNKRVDIDGVSVQQVAADFLRTH 304
>gi|77404633|ref|YP_345207.1| glycine betaine transporter periplasmic subunit [Rhodobacter
sphaeroides 2.4.1]
gi|77390283|gb|ABA81466.1| ABC Glycine betaine/L-proline transporter, periplasmic ligand
binding protein [Rhodobacter sphaeroides 2.4.1]
Length = 328
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 48/320 (15%), Positives = 94/320 (29%), Gaps = 34/320 (10%)
Query: 2 YKILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NI 59
+KI + + A D VR + + LE+ LGY
Sbjct: 4 FKIALSLMLSVAATPLLANDTPGEGVTVRPIMATQIEEFFQHRILFRALED-LGYSIAEP 62
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ + +L D W E F + + V ++GA V+
Sbjct: 63 QEVEYQTLHMALGAGDGDFSAVNWRSLHETFYQEAGGDEVLAKVGTLIEGALQGYLVDKK 122
Query: 120 GFALGIKSYQDIAKY--------KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
+ GI + + A + G PG + I ++
Sbjct: 123 TYDAGITDIGQLKDAEVAKKFDADGDGKADLAGCVPGWGCERVIEHQLDEYGLRDT-VTH 181
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHP----INSDLNIHYLPGGE----------- 216
+ + A + + +N ++ +W P+ + ++ +L
Sbjct: 182 NQGAYQAMIADVMARYQNGESVLYYTWTPYWVSGALVPGTDVEWLSVPHTSLPDGATGET 241
Query: 217 ----EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
+ GF S+ V R D+L P +L + K + + K I + + + +
Sbjct: 242 TFNGKNLGFAVDSIGVVARKDFLQANPAAEKLFEVAKIDIKDISTENKQITDGEANSSDI 301
Query: 273 ---GRTMLRTHPDLLKNWLI 289
+ H D WL
Sbjct: 302 DRHVDAWIAAHRDEYDGWLA 321
>gi|294508506|ref|YP_003572565.1| transmembrane protein [Salinibacter ruber M8]
gi|294344835|emb|CBH25613.1| transmembrane protein [Salinibacter ruber M8]
Length = 511
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 32/290 (11%), Positives = 75/290 (25%), Gaps = 24/290 (8%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILE-EILGYKTNI 59
++ L + + + + A+ + + + +T+ M + ++ E L
Sbjct: 17 IFSALLSIFVVLSLAAAPAQGQATDSTLALGSKKFTENVILGWMGTHLIRAEGLTATHRE 76
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEE----------GSIKLVAENLQG 109
+L + +L+ ID + Y ++ +A I + A
Sbjct: 77 ELGGSRFLWEALRRGDIDAYPEYTGTLRQELLADVDIAPGALADTLARYGIAMTAPLGFN 136
Query: 110 AKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
Y L + A + IA + + + + +
Sbjct: 137 NTYALGMRADQAAA--LGIESIADLQDHPDLRFGFTNEFMDRSDGWPSLRRAYDLPQSAR 194
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV 229
L R N V + ++ L ++ +
Sbjct: 195 GLDHDI-------AYRGLANGEIDVIDLYSTDAKIEQYDLRVLEDNKDHF--PAYEALFL 245
Query: 230 VRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
R D + P LK + + + ++ D V L
Sbjct: 246 YRRDLATRAPAAVTALKRLAGRIPADTMQRLNARSNIDQTDEATVAADFL 295
>gi|254555498|ref|YP_003061915.1| glycine betaine/carnitine/choline ABC transporter, substrate
binding and permease protein [Lactobacillus plantarum
JDM1]
gi|300767021|ref|ZP_07076934.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, substrate binding and permease
protein [Lactobacillus plantarum subsp. plantarum ATCC
14917]
gi|308179499|ref|YP_003923627.1| glycine betaine/carnitine/choline ABC transporter, substrate
binding and permease protein [Lactobacillus plantarum
subsp. plantarum ST-III]
gi|254044425|gb|ACT61218.1| glycine betaine/carnitine/choline ABC transporter, substrate
binding and permease protein [Lactobacillus plantarum
JDM1]
gi|300495559|gb|EFK30714.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, substrate binding and permease
protein [Lactobacillus plantarum subsp. plantarum ATCC
14917]
gi|308044990|gb|ADN97533.1| glycine betaine/carnitine/choline ABC transporter, substrate
binding and permease protein [Lactobacillus plantarum
subsp. plantarum ST-III]
Length = 508
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 35/283 (12%), Positives = 78/283 (27%), Gaps = 35/283 (12%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILE---EILGYKTNIKLLAVPVTFRSLKNKGIDI 78
A+ + A ++ M ++E E + F +LKN +DI
Sbjct: 230 ANRVETITIAGKLGSEPEILINMYKQLIEAEDEHVHVTLKPNFGKTTFLFSALKNNQVDI 289
Query: 79 FMGYWYPSLEKFIA------------------PYLEEGSIKLVAENLQGAKYMLAV-NDV 119
+ + LE + ++ + + Y LAV
Sbjct: 290 YPEFTGSVLETLVKGNNPAGQTANQTYQLAKQRLAKQEQMTYLKPMQYNNTYALAVTKKF 349
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+K+ D+ + + L + + N + + ++
Sbjct: 350 QQEHHLKTISDLTQVESILKPGMTL--EFIDRNDGLKGIKKTYGLD-------VTAKSME 400
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+ + ++ ++ L F ++++ + +K P
Sbjct: 401 PALRYEAISKGKINLVDAYATDSELRQYHLALLKD--NKHFFPTYQGAPLMKTSFANKHP 458
Query: 240 NISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ + L + K S EM + KQ V L H
Sbjct: 459 KVVKALNKLAGKISETDMQEMNYEVNVKKQSASTVAHRYLVKH 501
>gi|92114468|ref|YP_574396.1| substrate-binding region of ABC-type glycine betaine transport
system [Chromohalobacter salexigens DSM 3043]
gi|91797558|gb|ABE59697.1| Substrate-binding region of ABC-type glycine betaine transport
system [Chromohalobacter salexigens DSM 3043]
Length = 298
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 37/285 (12%), Positives = 83/285 (29%), Gaps = 27/285 (9%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL-AVPVTFRSLKNK 74
P+ +T+ T+ T +LE GY + + V ++ +N
Sbjct: 18 AVATTAHAQDDPIVVGGLNYTEHLILTSATFQLLEAN-GYNVDKRDGLGTSVLRQAQENG 76
Query: 75 GIDIFMGYWYPS---------------LEKFIAPYLEEGSIKLVAENLQGAKYMLAVND- 118
+D++ Y S E + + + Y LA+ +
Sbjct: 77 QVDLYWEYTGNSVILFNDQPQPADAAETYATAKRLDAEKGLIWLDPSDTNNTYALAMREA 136
Query: 119 VGFALGIKSYQDIAKYKKELGA-KIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
I + D+A+ + + + + + F +
Sbjct: 137 DAEERDIHTLSDLAEAMNDGADLTLASNAEFYARDDGLRPLQEAYGFEFPRSNVKRMDSG 196
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDK 237
R V L + N + L ++ + VVR + LD
Sbjct: 197 ----LTYSALREEEVDVALVFATDGRNGAFDFEVLDDDQQFF--PVYQLAPVVREETLDA 250
Query: 238 CPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
P++ LL + + ++ + + + Q+ + V + L +
Sbjct: 251 HPDLEPLLNEMSAALNDETLIDLNRRVDVDDQNIERVAKDFLTEN 295
>gi|293573021|ref|ZP_06683963.1| glycine betaine/carnitine/choline-binding protein [Enterococcus
faecium E980]
gi|291606923|gb|EFF36303.1| glycine betaine/carnitine/choline-binding protein [Enterococcus
faecium E980]
Length = 305
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 30/308 (9%), Positives = 74/308 (24%), Gaps = 37/308 (12%)
Query: 1 MYKIL------AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
M +IL L L + S + ++ ++ + ++E
Sbjct: 1 MKRILKMTMVLLSLLILASCSFPGLASNTDEDTISITGGITSEAQILASLVAGMVEHYTD 60
Query: 55 YKTNIKL--LAVPVTFRSLKNKGIDIFMGYWYPS-----------------LEKFIAPYL 95
T I + +++ N I + + +
Sbjct: 61 KNTAIINNLATTTINHQAMMNGDASISAARYTGTDLTTTLNLPPEKDPKKAFATVKDEFE 120
Query: 96 EEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRI 155
+ Y+ V S ++ K + G++ +
Sbjct: 121 KRYDQTWFPSYGFENTYVFLVRKDTAQKYHLS--KVSDLKNVADELVAGVDTSWINRKG- 177
Query: 156 LDMINNNKFSLKGFRLIEASE-LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPG 214
+ + + S + + L + + ++ L
Sbjct: 178 ----DGYDGFQETYGFSFNSILPMQIGLVYDAVEAGKMDIVLGYSTDGRIASYDLVMLED 233
Query: 215 GEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFV 272
+ VV + L P++ L + S E+ NN + V
Sbjct: 234 DRQFF--PPYDAAPVVDNKVLADTPHLKEALNKLGHTISTEKMQELNYEADNNLVEPSVV 291
Query: 273 GRTMLRTH 280
+ L+ +
Sbjct: 292 AQRFLQEN 299
>gi|315186275|gb|EFU20036.1| Substrate-binding region of ABC-type glycine betaine transport
system [Spirochaeta thermophila DSM 6578]
Length = 310
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 40/305 (13%), Positives = 89/305 (29%), Gaps = 31/305 (10%)
Query: 1 MYKILAVCLFLTTFSISYAR----DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
M K + + L + ++ P+ A T+ A M ++LEE G+
Sbjct: 1 MRKFVLLFLSVFLIFSLVISCTKKQEETGGPITVASKIDTEGALLGTMIVILLEEH-GFA 59
Query: 57 TN--IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS--------------- 99
++L + +++ N IDI+ Y + +
Sbjct: 60 VEDKVQLGPTDIVRKAIINGQIDIYPEYTGNGGFFYPEAPRDVWKDRVEAYRTVRDLDYE 119
Query: 100 ---IKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
+ + + +AV + + +D+A+Y ++ G + L
Sbjct: 120 THHLVWLEPAPANNTWAIAVRKDLAGGSLSTLEDLARYIEQGGEFKIAVSEEFVSRPDAL 179
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI--PAVFLSWEPHPINSDLNIHYLPG 214
+ + + + R +++ + L + L
Sbjct: 180 PAFEEAYGFILEKSQMLVLSGGNTATTERAAAEGTDGVNAAMAYGTDGQLAALGLVVLED 239
Query: 215 GEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFV 272
+ VVR + L P I +L+ + ++ + I +D V
Sbjct: 240 NLGV--QPVYEPAPVVREEVLKTYPEIEEILEPVFKSLTLTTLQSLNARIAVEGEDPAVV 297
Query: 273 GRTML 277
R L
Sbjct: 298 AREHL 302
>gi|269219664|ref|ZP_06163518.1| putative substrate binding domain of a glycine/betaine ABC
transport system [Actinomyces sp. oral taxon 848 str.
F0332]
gi|269210906|gb|EEZ77246.1| putative substrate binding domain of a glycine/betaine ABC
transport system [Actinomyces sp. oral taxon 848 str.
F0332]
Length = 311
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 27/278 (9%), Positives = 59/278 (21%), Gaps = 25/278 (8%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGIDIF 79
T V +T+ + E G+ + + + N ++
Sbjct: 28 GAKGTKVTVGSKAFTEQLILGKIAVYTAEAS-GFDVVDMTSVPGSQPARQLMVNGKTNLG 86
Query: 80 MGYWYPSLEKFI----------------APYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
Y + ++ + I + Y LAV +
Sbjct: 87 WEYTGTAWLTYMGHTRGMADQKAQWKAVSDQDRSNGITWGKPSKLNNTYALAVREEYAKE 146
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKF--SLKGFRLIEASELASFS 181
+ N + +++ + +
Sbjct: 147 KGIEKLSDIAKLAPADRTLCVDAEFNSRTDGLNPLLSKYGIPRGSSNGVPEQNVSVMDTG 206
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNI 241
I + LN+ L +V + + + K P +
Sbjct: 207 TIYTATDRGSCNFGEVFSTDGRIKSLNLRVLKDDLGFF--PAYNVSPIYATSLVKKFPKL 264
Query: 242 SRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
+ + EM + QD V R L
Sbjct: 265 RAYFDQMAPLLTDDEMREMNLKVDVEGQDPSKVARDWL 302
>gi|87120190|ref|ZP_01076085.1| Putative ABC transport protein [Marinomonas sp. MED121]
gi|86164293|gb|EAQ65563.1| Putative ABC transport protein [Marinomonas sp. MED121]
Length = 295
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 39/298 (13%), Positives = 89/298 (29%), Gaps = 28/298 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M KI+ + A ++ + +T+ T +T+ LE G+ +
Sbjct: 1 MLKIVKKLALTLALPVLAASSINASE-IVIGGKNFTEQQLLTEITTQYLEIK-GFDVEKR 58
Query: 61 LL-AVPVTFRSLKNKGIDIFMGYWYPSLEKF---------------IAPYLEEGSIKLVA 104
V ++ +N +D++ Y SL + + + + +
Sbjct: 59 AGMGSTVLRKAQENGQVDLYWEYTGTSLLNYNKFKGKLNPNEVYQKVKELDAKKGLVWLN 118
Query: 105 ENLQGAKYMLAVNDVGF-ALGIKSYQDIAK-YKKELGAKIYGIEPGNEGNQRILDMINNN 162
+ Y LA+ GI+S D+A + +I + +
Sbjct: 119 ASSANNTYALAMRKADANKAGIQSLSDLADAVNSDADLQIAVNAEFYARDDGFKPLQKAY 178
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
F +K + + + L + N L + + F
Sbjct: 179 GFKMKRKDIKRMDSG----LTYTALKEEQVDIALVFATDGRIQAFNFVTLAD--DKNYFP 232
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLR 278
++ V+R+D L P + LL + + ++ + + + + L
Sbjct: 233 NYALTPVIRADTLAANPALEGLLNKLSGMIDDNIMRDLNARVDVLRMPIEQTAKEFLA 290
>gi|257899485|ref|ZP_05679138.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecium Com15]
gi|257837397|gb|EEV62471.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecium Com15]
Length = 305
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 30/308 (9%), Positives = 74/308 (24%), Gaps = 37/308 (12%)
Query: 1 MYKIL------AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
M +IL L L + S + ++ ++ + ++E
Sbjct: 1 MKRILKMTMVLLSLLILASCSFPGLASNTDEDTISITGGITSEAQILASLVAGMVEHYTD 60
Query: 55 YKTNIKL--LAVPVTFRSLKNKGIDIFMGYWYPS-----------------LEKFIAPYL 95
T I + +++ N I + + +
Sbjct: 61 KNTAIINNLATTTINHQAMMNGDASISAARYTGTDLTTTLNLPPEKDPKKAFATVKDEFD 120
Query: 96 EEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRI 155
+ Y+ V S ++ K + G++ +
Sbjct: 121 KRYDQTWFPSYGFENTYVFLVRKDTAQKYHLS--KVSDLKNVADELVAGVDTSWINRKG- 177
Query: 156 LDMINNNKFSLKGFRLIEASE-LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPG 214
+ + + S + + L + + ++ L
Sbjct: 178 ----DGYDGFQETYGFSFNSILPMQIGLVYDAVEAGKMDIVLGYSTDGRIASYDLVMLED 233
Query: 215 GEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFV 272
+ VV + L P++ L + S E+ NN + V
Sbjct: 234 DRQFF--PPYDAAPVVDNKVLADTPHLKEALNKLGHTISTEKMQELNYEADNNLVEPSVV 291
Query: 273 GRTMLRTH 280
+ L+ +
Sbjct: 292 AQRFLQEN 299
>gi|258509141|ref|YP_003171892.1| ABC transporter glycine/betaine/carnitine substrate-binding
lipoprotein [Lactobacillus rhamnosus GG]
gi|257149068|emb|CAR88041.1| ABC transporter, glycine/betaine/carnitine substrate-binding
lipoprotein [Lactobacillus rhamnosus GG]
gi|259650428|dbj|BAI42590.1| glycine/betaine/carnitine ABC transporter substrate binding
component [Lactobacillus rhamnosus GG]
Length = 300
Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 33/163 (20%), Positives = 66/163 (40%), Gaps = 2/163 (1%)
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
++ I GI+ G + K ++L +S A S +++ + P V
Sbjct: 38 PQINYTITGIDAGAGIMSSTDKALKAYGLEEKNWQLQPSSTAAMTSTLQKAIADKRPIVV 97
Query: 196 LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
W PH + + + +L + + G E ++T+VR P ++L ++
Sbjct: 98 TGWTPHWMFTKFPLKFLKDPKNVYGKAE-QIHTIVRKGLKQDAPQAYQVLDQFHWTPKEI 156
Query: 256 NEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
+ +M + NN QD + ++ HP+ + W GV+ G
Sbjct: 157 SSVMLAV-NNGQDPAAAAKAYVKKHPEQIAQWTKGVSHVSGSP 198
Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats.
Identities = 19/98 (19%), Positives = 39/98 (39%), Gaps = 2/98 (2%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPS 86
+ W A+T + + +L + +GYK I+ + + S+ K D + W P+
Sbjct: 199 KLTLTYIAWDSEIASTNVVATVLRQ-MGYKVTIRAMEPQPVWASVATKAADAQVSAWLPN 257
Query: 87 LEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
+ + + + N+ GA+ LAV +
Sbjct: 258 TAAKLY-ADYKNQVVDLGVNMDGARVGLAVPKYMKNIN 294
>gi|227550871|ref|ZP_03980920.1| glycine/betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, binding protein [Enterococcus
faecium TX1330]
gi|257887877|ref|ZP_05667530.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecium 1,141,733]
gi|257893324|ref|ZP_05672977.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecium 1,231,408]
gi|257896505|ref|ZP_05676158.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecium Com12]
gi|293379284|ref|ZP_06625430.1| ABC transporter, substrate-binding protein, QAT family
[Enterococcus faecium PC4.1]
gi|227179969|gb|EEI60941.1| glycine/betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, binding protein [Enterococcus
faecium TX1330]
gi|257823931|gb|EEV50863.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecium 1,141,733]
gi|257829703|gb|EEV56310.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecium 1,231,408]
gi|257833070|gb|EEV59491.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecium Com12]
gi|292642080|gb|EFF60244.1| ABC transporter, substrate-binding protein, QAT family
[Enterococcus faecium PC4.1]
Length = 305
Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 31/306 (10%), Positives = 72/306 (23%), Gaps = 33/306 (10%)
Query: 1 MYKIL------AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
M +IL L L + S + ++ ++ + ++E
Sbjct: 1 MKRILKMTMVLFSLLILASCSFPGLASNTDEDTISITGGITSEAQILASLVAGMVEHYTD 60
Query: 55 YKTNIKL--LAVPVTFRSLKNKGIDIFMGYWY---------------PSLEKFIAPYLEE 97
T I + +++ N I + P I E
Sbjct: 61 KNTAIINNLATTTINHQAMMNGDASISAARYTGTDLTTTLNLPPEKDPKKAFEIVKDEFE 120
Query: 98 GSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILD 157
G + ++ K + G++ +
Sbjct: 121 KRYNQTWFPSYGFENTYVFLVRKDTAQKYHLSKVSDLKNVADELVAGVDTSWINRKG--- 177
Query: 158 MINNNKFSLKGFRLIEASE-LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ + + S + + L + + ++ L
Sbjct: 178 --DGYDGFQETYGFSFNSILPMQIGLVYDAVEAGKMDIVLGYSTDGRIASYDLVMLEDDR 235
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ VV + L P++ L + S E+ NN + V +
Sbjct: 236 QFF--PPYDAAPVVDNKVLADTPHLKEALNKLGHTISTEKMQELNYEADNNLVEPSVVAQ 293
Query: 275 TMLRTH 280
L+ +
Sbjct: 294 RFLQEN 299
>gi|42781875|ref|NP_979122.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein, putative [Bacillus
cereus ATCC 10987]
gi|42737799|gb|AAS41730.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein, putative [Bacillus
cereus ATCC 10987]
Length = 164
Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 40/168 (23%), Positives = 73/168 (43%), Gaps = 5/168 (2%)
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
I S +D+ +K EL KI GIEPG+ + L +L+++SE A S
Sbjct: 1 MKNINSIEDLNAHKDELDNKIVGIEPGSSLMNLTNKAMKEYDIKL---KLVQSSEAAMMS 57
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNI 241
++++ P W PH S+ ++ YL +++ G + +Y VR + P+I
Sbjct: 58 ELKKAYTKKKPIAVTLWNPHWGFSEFDLKYLKDPKKVYGEKD-DIYYSVRKGFEKDHPDI 116
Query: 242 SRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+ K + +M LN +D + R ++ + L+ W+
Sbjct: 117 IKYFDKWKMNDEQLGTLMVE-LNKTKDPEEAARKWIKKNQTLVDEWIK 163
>gi|209552004|ref|YP_002283920.1| substrate-binding region of ABC-type glycine betaine transporter
[Rhizobium leguminosarum bv. trifolii WSM2304]
gi|209539597|gb|ACI59528.1| Substrate-binding region of ABC-type glycine betaine transport
system [Rhizobium leguminosarum bv. trifolii WSM2304]
Length = 328
Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 47/311 (15%), Positives = 90/311 (28%), Gaps = 31/311 (9%)
Query: 8 CLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKLLAVP 65
CL + + + A + VR G + + E LGY + + P
Sbjct: 13 CLTFSVYGQAGAAELPGQGVTVR-PIKGTPANTWFQHLIVQMGLEKLGYTVADTQEADFP 71
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
++ D G W P + F + ++ V + G V+
Sbjct: 72 AVHLAVGAGDADYTAGNWTPLHDAFYEKSGGDSTMTRVHAIITGTTEGYYVDKKTAEANH 131
Query: 126 KSYQDIAKYKK---------ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ D K + + A + G PG I ++ + + S
Sbjct: 132 LTNIDQLKTPEIAKLFDTDGDGKANLAGCNPGWGCEASIEKHLDTFHLR-GSVQHDQGSY 190
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPIN---------------SDLNIHYLPGGEEISGF 221
A + + + P ++ +W P+ I S GF
Sbjct: 191 FAIMADVISRYKQGSPILYYTWTPNWIADALIEGRDVVRLQVPSTPGSKTKSADGTDYGF 250
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV---GRTMLR 278
+ VY V +++L K P + + + +A N + + V +
Sbjct: 251 ISSDVYIVANNEFLSKNPVAKKFFEMVNIPIADVNAAQIPLSKGNVKVEDVRKQAEAWVA 310
Query: 279 THPDLLKNWLI 289
H NW+
Sbjct: 311 AHQTDFDNWVD 321
>gi|318062837|ref|ZP_07981558.1| putative glycine betaine ABC transporter substrate-binding and
permease component [Streptomyces sp. SA3_actG]
Length = 201
Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 35/204 (17%), Positives = 80/204 (39%), Gaps = 6/204 (2%)
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIY 143
P+ + ++ + +AV G+KS D+ + E +I
Sbjct: 1 MPTTHAQYWKKYGD-RLEDMGSWYGPTSLEIAVPSYV--KGVKSTADLKGKESEFKNQIV 57
Query: 144 GIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPI 203
GIEP + D + + L +++++ S A ++++R P W PH
Sbjct: 58 GIEPSAGEMGLLKDKV-VKDYGLSKYKVVDGSTPAMLTELKRAYAKKEPIAVTLWSPHWA 116
Query: 204 NSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLIL 263
++ L + G G+ V+T+ R + P ++ LK+ K + + + I
Sbjct: 117 YDKYDLTKLSDPKGSWGKGD-EVHTLARKGFSKDFPEAAQWLKDFKLNEKQLSSLEGAIQ 175
Query: 264 NNKQ-DRQFVGRTMLRTHPDLLKN 286
+ + +Q ++ ++ +P ++
Sbjct: 176 DAGKGKQQEAVKSWIKDNPGIVDK 199
>gi|69249040|ref|ZP_00604855.1| Substrate-binding region of ABC-type glycine betaine transport
system [Enterococcus faecium DO]
gi|257878856|ref|ZP_05658509.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecium 1,230,933]
gi|257890714|ref|ZP_05670367.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecium 1,231,410]
gi|258615073|ref|ZP_05712843.1| glycine betaine/carnitine/choline ABC transporter, glycine
betaine/carnitine/choline-binding protein [Enterococcus
faecium DO]
gi|293560276|ref|ZP_06676773.1| glycine betaine/carnitine/choline-binding protein [Enterococcus
faecium E1162]
gi|314938947|ref|ZP_07846212.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecium
TX0133a04]
gi|314943502|ref|ZP_07850269.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecium TX0133C]
gi|314948204|ref|ZP_07851598.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecium TX0082]
gi|314951564|ref|ZP_07854610.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecium TX0133A]
gi|314991574|ref|ZP_07857050.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecium TX0133B]
gi|314994907|ref|ZP_07860034.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecium
TX0133a01]
gi|68194299|gb|EAN08815.1| Substrate-binding region of ABC-type glycine betaine transport
system [Enterococcus faecium DO]
gi|257813084|gb|EEV41842.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecium 1,230,933]
gi|257827074|gb|EEV53700.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecium 1,231,410]
gi|291605726|gb|EFF35163.1| glycine betaine/carnitine/choline-binding protein [Enterococcus
faecium E1162]
gi|313590889|gb|EFR69734.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecium
TX0133a01]
gi|313593858|gb|EFR72703.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecium TX0133B]
gi|313596258|gb|EFR75103.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecium TX0133A]
gi|313597874|gb|EFR76719.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecium TX0133C]
gi|313641656|gb|EFS06236.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecium
TX0133a04]
gi|313645337|gb|EFS09917.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecium TX0082]
Length = 305
Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 30/308 (9%), Positives = 74/308 (24%), Gaps = 37/308 (12%)
Query: 1 MYKIL------AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
M +IL L L + S + ++ ++ + ++E
Sbjct: 1 MKRILKMTMVLFSLLILASCSFPGLASNTDEDTISITGGITSEAQILASLVAGMVEHYTD 60
Query: 55 YKTNIKL--LAVPVTFRSLKNKGIDIFMGYWYPS-----------------LEKFIAPYL 95
T I + +++ N I + + +
Sbjct: 61 KNTAIINNLATTTINHQAMMNGDASISAARYTGTDLTTTLNLPPEKDPKKAFATVKDEFE 120
Query: 96 EEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRI 155
+ Y+ V S ++ K + G++ +
Sbjct: 121 KRYGQTWFPSYGFENTYVFLVRKDTAQKYHLS--KVSDLKNVADELVAGVDTSWINRKG- 177
Query: 156 LDMINNNKFSLKGFRLIEASE-LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPG 214
+ + + S + + L + + ++ L
Sbjct: 178 ----DGYDGFQETYGFSFNSILPMQIGLVYDAVEAGKMDIVLGYSTDGRIASYDLVMLED 233
Query: 215 GEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFV 272
+ VV + L P++ L + S E+ NN + V
Sbjct: 234 DRQFF--PPYDAAPVVDNKILADTPHLKEALNKLGHTISTEKMQELNYEADNNLVEPSVV 291
Query: 273 GRTMLRTH 280
+ L+ +
Sbjct: 292 AQRFLQEN 299
>gi|312881221|ref|ZP_07741019.1| glycine betaine ABC transporter, substrate-binding protein [Vibrio
caribbenthicus ATCC BAA-2122]
gi|309371113|gb|EFP98567.1| glycine betaine ABC transporter, substrate-binding protein [Vibrio
caribbenthicus ATCC BAA-2122]
Length = 310
Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 35/309 (11%), Positives = 77/309 (24%), Gaps = 30/309 (9%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL 62
KI A+C S + V+ WT T + +LE+
Sbjct: 5 KITALCAISGLTSSLVCAEP-----VKMLSLDWTSQQVLTKVLGKLLEQN-NVPVEYVYT 58
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
+ L N D+ + W S+ ++ G+I ++ + D
Sbjct: 59 DARSQWYKLANDQGDVQVEVWEGSMASKYQQLIDAGNIVEGGTHVATTREDWWYPDYAEE 118
Query: 123 --LGIKSYQDIAKYKKELGA-KIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
G+ ++ + + + GI G D L+
Sbjct: 119 VCPGLPDWKALKNCHQVFAEGRKKGI--YYTGPWEKPDAARIRALDLQFDVAKLKDGAEI 176
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE-------------------EISG 220
+I + P + +W P+ + + ++ +
Sbjct: 177 NQKIEKYIAAKKPLLIFNWSPNWVEAKYKGKFVEFPAHDDDCEKKASWGVNPKFKWDCGN 236
Query: 221 FGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ + +K + + L+ N K + L +
Sbjct: 237 PTGGWLKIAISKSLSEKSQCAVDTINSFSLDNGQIAMAAMLVDNQKMSVEDAVNKWLEEN 296
Query: 281 PDLLKNWLI 289
+ W
Sbjct: 297 KASMDKWTS 305
>gi|330719446|ref|ZP_08314046.1| glycine betaine/carnitine/choline ABC transporter, substratebinding
and permease protein [Leuconostoc fallax KCTC 3537]
Length = 508
Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 33/283 (11%), Positives = 77/283 (27%), Gaps = 35/283 (12%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILE---EILGYKTNIKLLAVPVTFRSLKNKGIDI 78
A+ + A ++ M ++E E + F +LKN +DI
Sbjct: 230 ANRVETITIAGKLGSEPEILINMYKQLIEAEDEHVHVTLKPNFGKTTFLFSALKNNQVDI 289
Query: 79 FMGYWYP------------------SLEKFIAPYLEEGSIKLVAENLQGAKYMLAV-NDV 119
+ + + + ++ + + Y LAV
Sbjct: 290 YPEFTGSVLETLGKGNNPAGQTANQTYQLAKQRLAKQEQMTYLKPMQYNNTYALAVTKKF 349
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+K+ D+ + + L + + N + + ++
Sbjct: 350 QQEHHLKTISDLTQVESILKPGMTL--EFIDRNDGLKGIKKTYGLD-------VTAKSME 400
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+ + ++ ++ L F ++++ + +K P
Sbjct: 401 PALRYEAISKGKINLVDAYATDSELRQYHLALLKD--NKHFFPTYQGAPLMKTSFANKHP 458
Query: 240 NISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ + L + K S EM + KQ V L H
Sbjct: 459 KVVKALNKLAGKISETDMQEMNYEVNVKKQSASTVAHRYLVKH 501
>gi|293556906|ref|ZP_06675467.1| glycine betaine/carnitine/choline-binding protein [Enterococcus
faecium E1039]
gi|291600990|gb|EFF31281.1| glycine betaine/carnitine/choline-binding protein [Enterococcus
faecium E1039]
Length = 305
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 30/308 (9%), Positives = 74/308 (24%), Gaps = 37/308 (12%)
Query: 1 MYKIL------AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
M +IL L L + S + ++ ++ + ++E
Sbjct: 1 MKRILKMTMVLFSLLILASCSFPGLASNTDEDTISITGGITSEAQILASLVAGMVEHYTD 60
Query: 55 YKTNIKL--LAVPVTFRSLKNKGIDIFMGYWYPS-----------------LEKFIAPYL 95
T I + +++ N I + + +
Sbjct: 61 KNTAIINNLATTTINHQAMVNGDASISAARYTGTDLTTTLNLPPEKDPKKAFATVKDEFE 120
Query: 96 EEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRI 155
+ Y+ V S ++ K + G++ +
Sbjct: 121 KRYDQTWFPSYGFENTYVFLVRKDTAQKYHLS--KVSDLKNVADELVAGVDTSWINRKG- 177
Query: 156 LDMINNNKFSLKGFRLIEASE-LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPG 214
+ + + S + + L + + ++ L
Sbjct: 178 ----DGYDGFQETYGFSFNSILPMQIGLVYDAVEAGKMDIVLGYSTDGRIASYDLVMLED 233
Query: 215 GEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFV 272
+ VV + L P++ L + S E+ NN + V
Sbjct: 234 DRQFF--PPYDAAPVVDNKILADTPHLKEALNKLGHTISTEKMQELNYEADNNLVEPSVV 291
Query: 273 GRTMLRTH 280
+ L+ +
Sbjct: 292 AQRFLQEN 299
>gi|239929365|ref|ZP_04686318.1| glycine betaine-binding lipoprotein [Streptomyces ghanaensis ATCC
14672]
gi|291437693|ref|ZP_06577083.1| glycine betaine-binding lipoprotein [Streptomyces ghanaensis ATCC
14672]
gi|291340588|gb|EFE67544.1| glycine betaine-binding lipoprotein [Streptomyces ghanaensis ATCC
14672]
Length = 298
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 44/300 (14%), Positives = 88/300 (29%), Gaps = 33/300 (11%)
Query: 1 MYK-----ILAVCLFLTTFSISYA---------RDADSCTPVRFADTGWTDIAATTAMTS 46
M + + A +A V A W A A+
Sbjct: 1 MRRRTTSAVAGAFALALLTGCGAADMTKQASPYANAQGARTVTLAVQSWVGSLANVAVAQ 60
Query: 47 VILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWY-PSLEKFIAPYLEEGSIKLVAE 105
+LE LGY+ +I + + +L +D + W P EK ++ +I +
Sbjct: 61 HLLEHELGYRVDIVQVDEVPAWDALSQGRVDAILEDWGHPEQEKLYVE--DKKTIARGGD 118
Query: 106 NLQGAKYMLAVNDVGFA--LGIKSYQDIAKYKKELGAKIYGIEPG---NEGNQRILDMIN 160
+ +KS++D+ +Y G + D
Sbjct: 119 LGVTGHIGWFIPTYFAEQHPDLKSWKDLNRYADRFRTAESGGKGQLMDGSPAYLTHDKAL 178
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE--- 217
L + SE A +QI++ + P + PH + + + +
Sbjct: 179 VKNLKLDFKVVFAGSEAALLTQIKQFAKEKKPFLTYWNTPHWLFEKVPMTEVELPPYEEG 238
Query: 218 --------ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDR 269
+ + + +D+ + LK +S +NE+ +I + K
Sbjct: 239 CDADPAKVACAYPHTPLQKYLNADFARDGGEAADFLKKFAWSTEDQNEVSLMIADQKLSP 298
>gi|28898502|ref|NP_798107.1| glycine betaine transporter periplasmic subunit [Vibrio
parahaemolyticus RIMD 2210633]
gi|260365055|ref|ZP_05777626.1| glycine betaine ABC transporter, glycine betaine-binding protein
[Vibrio parahaemolyticus K5030]
gi|260879549|ref|ZP_05891904.1| glycine betaine ABC transporter, glycine betaine-binding protein
[Vibrio parahaemolyticus AN-5034]
gi|260894976|ref|ZP_05903472.1| glycine betaine transporter, periplasmic subunit [Vibrio
parahaemolyticus Peru-466]
gi|28806720|dbj|BAC59991.1| ABC superfamily (glycine/betaine/proline transport protein) [Vibrio
parahaemolyticus RIMD 2210633]
gi|308085971|gb|EFO35666.1| glycine betaine transporter, periplasmic subunit [Vibrio
parahaemolyticus Peru-466]
gi|308093352|gb|EFO43047.1| glycine betaine ABC transporter, glycine betaine-binding protein
[Vibrio parahaemolyticus AN-5034]
gi|308111485|gb|EFO49025.1| glycine betaine ABC transporter, glycine betaine-binding protein
[Vibrio parahaemolyticus K5030]
Length = 335
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 38/325 (11%), Positives = 92/325 (28%), Gaps = 39/325 (12%)
Query: 2 YKILAVCLFLTTFSIS---YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
K L+V + + V+ + + T + + LE LGY
Sbjct: 6 KKALSVGALSAIAFSTYGIAGELPGAGVAVQPVQSTVAEETFQTLIVNRALEA-LGYDVQ 64
Query: 59 -IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
K + V + S+ W+P + + + GA ++
Sbjct: 65 PTKEVDYNVGYTSIAKGDATFLAVGWFPLHADKYTMSGGDDKFFREGQYVSGAAQGYLID 124
Query: 118 DVGFALGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
+ + + A + G PG + ++ K
Sbjct: 125 KKTAEKYGITNIGQLKDPKLAKLFDANGDGKADLTGCNPGWGCEMVVEHQLDAFKLRDT- 183
Query: 169 FRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP----INSDLNIHYLPGGE-------- 216
+ + A + + P ++ +W P+ + ++ +L
Sbjct: 184 VTHNQGNYAAIIAYTISRYKKGDPILYYTWTPYWVSGVLVPGKDVVWLEVPFSSLPGERK 243
Query: 217 ---------EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQ 267
+ GF S+ V ++ K P+ ++L + IK ++ + ++ K
Sbjct: 244 DIDTTLKNGKNYGFEMNSMRIVANKEFTKKNPSAAKLFEIIKLNINDVSAQNMMMSQGKN 303
Query: 268 DRQFV---GRTMLRTHPDLLKNWLI 289
+ ++ + W+
Sbjct: 304 SAADIEAHVNGWIKANQTTFDGWIE 328
>gi|257881492|ref|ZP_05661145.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecium 1,231,502]
gi|294620889|ref|ZP_06700090.1| glycine betaine/carnitine/choline-binding protein [Enterococcus
faecium U0317]
gi|257817150|gb|EEV44478.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecium 1,231,502]
gi|291599500|gb|EFF30516.1| glycine betaine/carnitine/choline-binding protein [Enterococcus
faecium U0317]
Length = 305
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 30/308 (9%), Positives = 74/308 (24%), Gaps = 37/308 (12%)
Query: 1 MYKIL------AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
M +IL L L + S + ++ ++ + ++E
Sbjct: 1 MKRILKMTMVLFSLLILASCSFPGLASNTDEDTISITGGITSEAQILASLVAGMVEHYTD 60
Query: 55 YKTNIKL--LAVPVTFRSLKNKGIDIFMGYWYPS-----------------LEKFIAPYL 95
T I + +++ N I + + +
Sbjct: 61 KNTAIINNLATTTINHQAMMNGDASISAARYTGTDLTTTLNLPPEKDPKKAFATVKDEFE 120
Query: 96 EEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRI 155
+ Y+ V S ++ K + G++ +
Sbjct: 121 KRYGQTWFPSYSFENTYVFLVRKDTAQKYHLS--KVSDLKNVADELVAGVDTSWINRKG- 177
Query: 156 LDMINNNKFSLKGFRLIEASE-LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPG 214
+ + + S + + L + + ++ L
Sbjct: 178 ----DGYDGFQETYGFSFNSILPMQIGLVYDAVEAGKMDIVLGYSTDGRIASYDLVMLED 233
Query: 215 GEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFV 272
+ VV + L P++ L + S E+ NN + V
Sbjct: 234 DRQFF--PPYDAAPVVDNKILADTPHLKEALNKLGHTISTEKMQELNYEADNNLVEPSVV 291
Query: 273 GRTMLRTH 280
+ L+ +
Sbjct: 292 AQRFLQEN 299
>gi|108805373|ref|YP_645310.1| substrate-binding region of ABC-type glycine betaine transport
system [Rubrobacter xylanophilus DSM 9941]
gi|108766616|gb|ABG05498.1| Substrate-binding region of ABC-type glycine betaine transport
system [Rubrobacter xylanophilus DSM 9941]
Length = 332
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 52/281 (18%), Positives = 96/281 (34%), Gaps = 14/281 (4%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI-KLLAVPVTFRSLKNK 74
S + A TGW + AA +T +LE+ LGY+ + ++ + +
Sbjct: 48 PSQVSARSQDDRIDIAYTGWPEDAAIAGLTQALLED-LGYRVELHRVSGQRRAIDGVASG 106
Query: 75 GIDIFMGYWYPSLEKFIAPYLEEGSIKLVA----ENLQGAKYMLAVNDVGFALGIKSYQD 130
D+F W P E+ ++ E L +L + + A
Sbjct: 107 RYDVFHDVWVPVHEELLSRAGEGRDNPLDGRLDEVDLLNSWLVGVTRSGLAAPSYMEINR 166
Query: 131 IAKYKKELGAKIYGIEPGNEG-NQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRN 189
+ + + + + PG ++ ++ + S A ++ R R
Sbjct: 167 VGEIEGSGAERALVLAPGASALGPPPRRALSRWGLEVEEY----GSAAAMLEEVDRLYRR 222
Query: 190 NIPAVFLSWEPHPINSDLNIHYLPGGEEI--SGFGEASVYTVVRSDYLDKCPNISRLLKN 247
P VFL+W PH +N + YL E S A + + R ++ P L+
Sbjct: 223 REPFVFLAWAPHWMNREYEFSYLEDPEYALGSLTLPAEIRIITRRGMEERQPLAYALIDT 282
Query: 248 IKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
I + + ++ I + R L + DL WL
Sbjct: 283 IVLTQSQVEDVQLAIRRAG-SPEAGARRWLAANQDLRSAWL 322
>gi|317131841|ref|YP_004091155.1| Substrate-binding region of ABC-type glycine betaine transport
system [Ethanoligenens harbinense YUAN-3]
gi|315469820|gb|ADU26424.1| Substrate-binding region of ABC-type glycine betaine transport
system [Ethanoligenens harbinense YUAN-3]
Length = 304
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 44/303 (14%), Positives = 102/303 (33%), Gaps = 36/303 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDAD-------SCTPVRFADTGWTDIAATTAMTSVILEEIL 53
M K + + L + + S T V T+ + ++ L++
Sbjct: 1 MKKTIRSAISLLLTAATVFTLGACTKNGNSSGTTVTIGSKDSTENLLVAEVYALALKDN- 59
Query: 54 GYKTNIKL-LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIA----------------PYLE 96
G+ N K + + +L + ID++ Y L + YL+
Sbjct: 60 GFHVNRKFKINSTLIHSALTSGQIDLYPEYTSTGLLAVLKLPLITDPQNVYNTVKVDYLK 119
Query: 97 EGSIKLVAENLQGAKYMLAVNDVG-FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRI 155
+ ++ + + L + I++ D+ K + +P ++ + +
Sbjct: 120 QFNLVWLNYSPANDSQCLVITQAASAKYNIRTISDLQK--GASQIRFASQDPFDQRSDGM 177
Query: 156 LDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG 215
+ F+ + + QI N+ V +++ SD +L
Sbjct: 178 PALTVAY--GPFHFKSEQTYDNGLKYQI---LANDKADVTVAYATEGQLSDT-SKFLVLE 231
Query: 216 EEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVG 273
++ + ++ VVR LDK I+ +L + + ++ + NKQ+ + V
Sbjct: 232 DDKHVWPPYNLAPVVRKQVLDKNAKIATVLNKVSALINTKTMTQLNAKVDVNKQNYEDVA 291
Query: 274 RTM 276
+T
Sbjct: 292 KTF 294
>gi|257885764|ref|ZP_05665417.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecium 1,231,501]
gi|261207137|ref|ZP_05921826.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecium TC 6]
gi|289565258|ref|ZP_06445709.1| osmotically activated L-carnitine/choline ABC transporter,
substrate-binding protein OpuCC [Enterococcus faecium
D344SRF]
gi|294615104|ref|ZP_06694990.1| glycine betaine/carnitine/choline-binding protein [Enterococcus
faecium E1636]
gi|257821620|gb|EEV48750.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecium 1,231,501]
gi|260078765|gb|EEW66467.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecium TC 6]
gi|289162914|gb|EFD10763.1| osmotically activated L-carnitine/choline ABC transporter,
substrate-binding protein OpuCC [Enterococcus faecium
D344SRF]
gi|291592046|gb|EFF23669.1| glycine betaine/carnitine/choline-binding protein [Enterococcus
faecium E1636]
Length = 305
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 30/308 (9%), Positives = 74/308 (24%), Gaps = 37/308 (12%)
Query: 1 MYKIL------AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
M +IL L L + S + ++ ++ + ++E
Sbjct: 1 MKRILKMTMVLFSLLILASCSFPGLASNTDEDTISITGGITSEAQILASLVAGMVEHYTD 60
Query: 55 YKTNIKL--LAVPVTFRSLKNKGIDIFMGYWYPS-----------------LEKFIAPYL 95
T I + +++ N I + + +
Sbjct: 61 KNTAIINNLATTTINHQAMMNGDASISAARYTGTDLTTTLNLPPEKDPKKAFATVKDEFE 120
Query: 96 EEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRI 155
+ Y+ V S ++ K + G++ +
Sbjct: 121 KRYDQTWFPSYGFENTYVFLVRKDTAQKYHLS--KVSDLKNVADELVAGVDTSWINRKG- 177
Query: 156 LDMINNNKFSLKGFRLIEASE-LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPG 214
+ + + S + + L + + ++ L
Sbjct: 178 ----DGYDGFQETYGFSFNSILPMQIGLVYDAVEAGKMDIVLGYSTDGRIASYDLVMLED 233
Query: 215 GEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFV 272
+ VV + L P++ L + S E+ NN + V
Sbjct: 234 DRQFF--PPYDAAPVVDNKILADTPHLKEALNKLGHTISTEKMQELNYEADNNLVEPSVV 291
Query: 273 GRTMLRTH 280
+ L+ +
Sbjct: 292 AQRFLQEN 299
>gi|312870579|ref|ZP_07730694.1| ABC transporter, substrate-binding protein, QAT family
[Lactobacillus oris PB013-T2-3]
gi|311093894|gb|EFQ52223.1| ABC transporter, substrate-binding protein, QAT family
[Lactobacillus oris PB013-T2-3]
Length = 299
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 27/299 (9%), Positives = 85/299 (28%), Gaps = 28/299 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+ ++A + + ++ A S P+ ++ + + ++ LE GYK K
Sbjct: 8 ITSLVAATVLILGTAVPSVASAASNKPIIVGSKNVSESKTVSEIYALALEHE-GYKVTRK 66
Query: 61 LL-AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPY----------------LEEGSIKLV 103
A V F++ + +D++ Y +E ++ +++ +
Sbjct: 67 PNIANNVIFQATQKGQVDVYPDYTGTIVEAYLKKRASGKSASEIAKIAHQGVQKDGLTTF 126
Query: 104 AENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK 163
+ +A+ + KK + + + M
Sbjct: 127 DYAPGDNRQGIAMPTKVAKRDHIRDLSQLQ-KKADKIRFASQGEFEKRADALPAMNKAYG 185
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
++ + + + + + + + +
Sbjct: 186 KFD-----FKSIKDYDVNLLYKIMEQGKADAAPVSTTDGQLATGKFTLIKD--NKNIWPP 238
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
++ V P ++R L + K + + + + + Q+ + V + +
Sbjct: 239 YNLVPVANQKAAKSHPKMARALNKVDAKLTTKQLTTLNRKVNVDGQNYKTVAKNWYEHN 297
>gi|296141814|ref|YP_003649057.1| substrate-binding region of ABC-type glycine betaine transporter
[Tsukamurella paurometabola DSM 20162]
gi|296029948|gb|ADG80718.1| Substrate-binding region of ABC-type glycine betaine transport
system [Tsukamurella paurometabola DSM 20162]
Length = 320
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 29/310 (9%), Positives = 73/310 (23%), Gaps = 39/310 (12%)
Query: 5 LAVCLFLTTFSISY--------------ARDADSCTPVRFADTGWTDIAATTAMTSVILE 50
L L + + + + + +++ +T+ +L
Sbjct: 10 LGAALVMALGACGLESSSGHFVSAESADGQKPLAGATISVTSKSFSEGVLLGKITTTML- 68
Query: 51 EILGYKTNIKLLAVPVTFRSLK--NKGIDIFMGYWYPSLEKFIA---------------- 92
+ G A + D+ Y ++
Sbjct: 69 QASGADITDITNAPGSMSSRQAMVSGAADVSWEYTGTIWVSYLKQTETISDSTELFTRVR 128
Query: 93 PYLEEGSIKLVAENLQGAKYMLAV-NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEG 151
I+++ Y AV L +++ D+ + + +
Sbjct: 129 DAERRNGIEVLTPAPFNNTYAFAVTPQQKAQLNLRTLSDLFRLPPQQRSLCV-DPEFQSR 187
Query: 152 NQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHY 211
+ ++ + L + + + +
Sbjct: 188 PDGLPRLLQKYEVRLGTATPANTVNTMDAGVVYSAISGGTCLAGDVYATDGRIRKMGLEL 247
Query: 212 LPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDR 269
L + VR+D L K P ++ +L + + E+ I +D
Sbjct: 248 LEDDRKFFL--PYDGVPEVRTDALAKYPALTEVLGKVSRLLTNETMQELNGQIDIEGRDP 305
Query: 270 QFVGRTMLRT 279
V T L+
Sbjct: 306 ADVAATWLKK 315
>gi|227524881|ref|ZP_03954930.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, binding and permease protein
[Lactobacillus hilgardii ATCC 8290]
gi|227087952|gb|EEI23264.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, binding and permease protein
[Lactobacillus hilgardii ATCC 8290]
Length = 508
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 36/272 (13%), Positives = 77/272 (28%), Gaps = 19/272 (6%)
Query: 26 TPVRFADTGWTDIAATTAMTSVILEEI---LGYKTNIKLLAVPVTFRSLKNKGIDIFMGY 82
+ A ++ M +++ + F +LK+ I+I+ +
Sbjct: 238 ERIVIAGKLGSEPDILINMYRDLIDAGDKKIDVDLKPNFGKTSFLFSALKSNQINIYPEF 297
Query: 83 WYPSLEKFIAPYLEE------GSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKK 136
LE I + I +A+N AKY + + K+ K
Sbjct: 298 TGTVLEDIIPNSERQLQNKSATQIYHMAKNELAAKYNMTYGSPLNYNNTYTVVTTHKFAK 357
Query: 137 ELGAKIYGIEP------GNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
+ + + ++ + K +K + L + + R
Sbjct: 358 RHHLRTISDLKKLQSRLHSGFDLEFMNRDDGYKGLVKKYGLSFNNTDLDPDLRYQAIRRG 417
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI-- 248
V + ++ L F ++ + K P + + L+ +
Sbjct: 418 QVQVIDGYSTDSQIRQYHLVSLRD--NKHLFPTYQGAPLMTKAFAKKHPAVVKQLQQLAG 475
Query: 249 KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
K + EM + K V R L+ H
Sbjct: 476 KITAKEMREMNYDVNVKKVSAAKVARHYLQRH 507
>gi|313631258|gb|EFR98703.1| glycine betaine ABC transporter glycine betaine-binding protein
[Listeria seeligeri FSL N1-067]
Length = 193
Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats.
Identities = 33/198 (16%), Positives = 74/198 (37%), Gaps = 8/198 (4%)
Query: 92 APYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEG 151
S+ + NL+GA L V + + E + I IEPG
Sbjct: 4 YAEKYGDSMVDLGANLEGAISALTVPTYMEDINSIT-----DLTDENDSTITAIEPGAGV 58
Query: 152 NQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHY 211
+ + +L + + +S A +++ + N V + W+PH + D ++
Sbjct: 59 TNSAQNAVKEYD-NLSDWEVSVSSTGAMIAELDQAINNEEDIVVVGWKPHWMFMDYDLKM 117
Query: 212 LPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQF 271
L E + G E +++ R + P +++ N + V + +M+ + + + +
Sbjct: 118 LDDPENVFGGYE-EIHSYAREGLKEDNPEAYKIIDNFYWEVEDMSSVMEELATD-VEPEE 175
Query: 272 VGRTMLRTHPDLLKNWLI 289
+ + + + WL
Sbjct: 176 AADNWIEANRETVDGWLE 193
>gi|170016809|ref|YP_001727728.1| glycine betaine/carnitine/choline ABC transporter, substrate
binding and permease protein [Leuconostoc citreum KM20]
gi|169803666|gb|ACA82284.1| Glycine betaine/carnitine/choline ABC transporter, substrate
binding and permease protein [Leuconostoc citreum KM20]
Length = 504
Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats.
Identities = 32/307 (10%), Positives = 82/307 (26%), Gaps = 38/307 (12%)
Query: 1 MYKILAVCLFLTTFSISYAR---DADSCTPVRFADTGWTDIAATTAMTSVILE-EILGYK 56
+ +I L + S D + + A ++ M + +++ E K
Sbjct: 205 LRRITLSLLLILFIGGSVVPLLPDKSAPQTITIAGKLGSEPEILINMYAQLIKAEQPNTK 264
Query: 57 T--NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------ 96
+++LK+ IDI+ + ++
Sbjct: 265 VILKPSFGVTTFLYQALKSNKIDIYPEFTGTVTASLAKNPVKLPIGADAQTTYNAAQKVA 324
Query: 97 -EGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRI 155
+ + L Y +AV + A + + + +
Sbjct: 325 KQQGLLLTKPMRFNDTYAIAVTQKAAQKYGLNSIGDLTKLPNAKAGMTA--EFLDRSDGM 382
Query: 156 LDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG 215
+ + L + + + V ++ + L
Sbjct: 383 PGVEKMYGLKMPTVSLDP-------ALRYQAINQDQVNVVDAYATDSQLVAYKLKVLTD- 434
Query: 216 EEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVG 273
+ F +++S++ + P+I + L + + S +M + + V
Sbjct: 435 -DKHFFPFYQGAALMKSEFASRNPHIVKALNRLDNRISNTDMQKMNYAVNVKHESASKVA 493
Query: 274 RTMLRTH 280
+ L TH
Sbjct: 494 KAYLVTH 500
>gi|82752042|ref|YP_417783.1| betaine-carnitine-choline ABC transporter [Staphylococcus aureus
RF122]
gi|82657573|emb|CAI82017.1| betaine-carnitine-choline ABC transporter [Staphylococcus aureus
RF122]
Length = 313
Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats.
Identities = 26/289 (8%), Positives = 72/289 (24%), Gaps = 27/289 (9%)
Query: 13 TFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL----LAVPVTF 68
S+ + V+ ++ + M +++E K L + +
Sbjct: 20 GCSLPGLGSKSTKNDVKITALSTSESQIISHMLRLLIEHDTHGKIKPTLVNNLGSSTIQH 79
Query: 69 RSLKNKGIDIF-MGYWYPSLEKFIAPYL--------------EEGSIKLVAENLQGAKYM 113
+L N +I + Y L + + + G
Sbjct: 80 NALINGDANISGVRYNGTDLTGALKEAPIKDPKKAMIATQQGFKKKFDQTFFDSYGFANT 139
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
A + ++ K G++ + ++ +
Sbjct: 140 YAFMVTKETAKKYHLETVSDLAKHSKDLRLGMDSSWMNRKGDGYEGFKKEYGFDFGTVRP 199
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+ + V L + + ++ L + F + V ++
Sbjct: 200 ----MQIGLVYDALNSEKLDVALGYSTDGRIAAYDLKVLKD--DKQFFPPYAASAVATNE 253
Query: 234 YLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
L + P + + + K S + + ++ V L+ +
Sbjct: 254 LLRQHPELKTTINKLTGKISTSEMQRLNYEADGKGKEPAVVAEEFLKKY 302
>gi|146311576|ref|YP_001176650.1| substrate-binding region of ABC-type glycine betaine transport
system [Enterobacter sp. 638]
gi|145318452|gb|ABP60599.1| Substrate-binding region of ABC-type glycine betaine transport
system [Enterobacter sp. 638]
Length = 298
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 39/278 (14%), Positives = 84/278 (30%), Gaps = 33/278 (11%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL-AVPVTFRSLKNKGIDIFMGYWYP 85
P+ A +T+ +AMT L++ G++ K A ++ ++ NK +D+ Y
Sbjct: 24 PLVLATKSFTEQHILSAMTVQYLQKK-GFEVQPKTNIATVISRNAMINKQVDMTWEYTGT 82
Query: 86 S---------------LEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQ- 129
S + + + + Y A+ +
Sbjct: 83 SLIIFNHINKRMSPQESYDTVKRLDGKLGLVWLKPANMNNTYAFAMQRKRAEAEHINTMS 142
Query: 130 -------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ K + + + + + + L ++ +
Sbjct: 143 DMVAKIEQVRKTDPDNNWMLGLDLEFAGRSDGMKPLQEAYQMELDRPQIRQMDPG----L 198
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ R+ L + ++ L + +V VVR D LD P +
Sbjct: 199 VYNAVRDGFVDAGLVYATDGRVKGFDLKVLEDDKGFF--PSYAVTPVVRKDTLDANPGLE 256
Query: 243 RLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
L + + + + E+ K + + Q Q V R LR
Sbjct: 257 EALNTLSSQLNNDVITELNKKVDIDHQSPQQVARDFLR 294
>gi|86606868|ref|YP_475631.1| quaternary amine ABC transporter substrate-binding protein
[Synechococcus sp. JA-3-3Ab]
gi|86555410|gb|ABD00368.1| quaternary amine uptake ABC transporter (QAT) family,
substrate-binding protein [Synechococcus sp. JA-3-3Ab]
Length = 299
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 38/279 (13%), Positives = 78/279 (27%), Gaps = 29/279 (10%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMT-SVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
A P+ +T+ M + L + + L PV L + ID++
Sbjct: 24 QAGFGKPIVVGSKDFTEQFILGEMYALALEAAGLAVERKLNLGGTPVAHAGLLSGEIDLY 83
Query: 80 MGYWYPSLEKFIA----------------PYLEEGSIKLVAENLQGAKYMLAV-NDVGFA 122
Y L + Y + + + LA+
Sbjct: 84 PEYTGTGLLTVLKLPTSSDPAQVYATVAREYERQFQLIWLDPAPMNNTQALAMTRARAAE 143
Query: 123 LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
LGI + D+ + G + + ++A +
Sbjct: 144 LGIATISDMVAR--ASELVMIGPPEFQAREDGLPGLQAVYGNFR-----LKAYKAVDPGL 196
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ N V +++ + ++ L + F V VVR D L+ P I+
Sbjct: 197 RYQGLVNGEADVAVAFGTDGEIAAFDLVVLKD--DKQLFPPYQVAPVVRKDTLEANPGIA 254
Query: 243 RLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
L + + + + + +++ V R L
Sbjct: 255 TALNALSPLLTDEVMQRLNYEVSGKRREPAEVARAFLVE 293
>gi|219851975|ref|YP_002466407.1| Substrate-binding region of ABC-type glycine betaine transport
system [Methanosphaerula palustris E1-9c]
gi|219546234|gb|ACL16684.1| Substrate-binding region of ABC-type glycine betaine transport
system [Methanosphaerula palustris E1-9c]
Length = 302
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 38/305 (12%), Positives = 92/305 (30%), Gaps = 39/305 (12%)
Query: 1 MYK------ILAVCLFLTTFSISYARDADSC-TPVRFADTGWTDIAATTAMTSVILEEIL 53
M K +L + L + + + T + + + + M + IL++
Sbjct: 1 MKKEILFTVLLVIVLVIAGCTSGPGQSVSQKNTTIVVGAKTFNEQYILSEMIAQILKDN- 59
Query: 54 GYKTNIKLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------- 99
GY+ +K T F +KN + +++ Y + + + +
Sbjct: 60 GYQAVVKSGLNDGTLFEGIKNGQVGVYVEYTGTAYSQLLKLPALQTWDPDVVSAKVKEGL 119
Query: 100 ----IKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQR 154
I ++++ Y +AV + + I++ ++G + +E
Sbjct: 120 AGENITVLSQIGFRDDYTIAVREDWAVSH-NNVSTISELVPYAKDLVFGSDLVFHEREDG 178
Query: 155 ILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPG 214
+ + + K + S + + +N V + + L
Sbjct: 179 LPSLQKVYGLTFKDVK------PMSPTLMYEAIKNGQVDVIPPYTTDSRVDLYKLRTLRD 232
Query: 215 GEEISGFGEASVYTVVRSDYLDKCPNISRLLK--NIKFSVALENEMMKLILNNKQDRQFV 272
+ + P + + L N K E+ + +K+D Q +
Sbjct: 233 DRSAM--PPYHAILLANAGLAK-NPGVVQALAVLNGKIDTTTMRELNRQFDIDKRDAQEI 289
Query: 273 GRTML 277
T L
Sbjct: 290 AHTYL 294
>gi|300716794|ref|YP_003741597.1| Osmoprotectant transport protein OusBX [Erwinia billingiae Eb661]
gi|299062630|emb|CAX59750.1| Osmoprotectant transport protein OusBX [Erwinia billingiae Eb661]
Length = 332
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 39/320 (12%), Positives = 88/320 (27%), Gaps = 36/320 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLL 62
LA+ + A V + + T + + L + LGY IK +
Sbjct: 8 TLAITTLASASPAFSATLPGKGVVVNAVQSSLPEETFQTELVNRAL-QALGYDVQPIKEV 66
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
V + ++ + W P + A + + GA ++
Sbjct: 67 DYNVAYTAIASGDATYMAVNWDPLQKDMYASAGGDNKFYRQGTYISGAAQGYLIDKKTAD 126
Query: 123 LGI---------KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+ + + A + G PG I I S +
Sbjct: 127 KYHIHDISQLKDPNIAKLFDADGDGKADLAGCNPGWVCGSVISTQIEAYGLS-NTVVQNQ 185
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGE------------- 216
+ A + + P ++ +W P+ ++ + ++ +L
Sbjct: 186 GNYSAIIADTLTRFKAGKPVLYYTWTPYWVSDELKPGKDVVWLTVPHSANPGSQKDLDTT 245
Query: 217 ----EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
+ GF + + V + P ++L +K +A N + + +
Sbjct: 246 LPNGKNYGFPVNNEHIVANKAWAQANPAAAKLFAVMKLPLADVNAQNLRMHEGQGSSDDI 305
Query: 273 ---GRTMLRTHPDLLKNWLI 289
+ +H W+
Sbjct: 306 DRHVDGWIASHQATFDGWVK 325
>gi|213584799|ref|ZP_03366625.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Typhi str. E98-0664]
Length = 313
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 37/311 (11%), Positives = 88/311 (28%), Gaps = 37/311 (11%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
K L L T S + A P+ A +T+ +AMT L++ G++ +
Sbjct: 4 KKHLLGWLATTLLFSSQTQAA----PLVLATKSFTEQHILSAMTVQYLQKK-GFQVQPQT 58
Query: 62 LAVPVT-FRSLKNKGIDIFMGYWYPS---------------LEKFIAPYLEEGSIKLVAE 105
V ++ NK IDI Y S + + + +
Sbjct: 59 NIAAVISRNAMVNKQIDITWEYTGTSLIIFNRIDKRMSPQETYDTVKRLDAKLGLVWLKP 118
Query: 106 NLQGAKYMLAVNDVGFALGIKSY--------QDIAKYKKELGAKIYGIEPGNEGNQRILD 157
Y A+ + + + + + + + +
Sbjct: 119 ADMNNTYAFAMQRKRAESENITTISQMVAKIEQVRQNDPDHNWMLGLDLEFAGRSDGMKP 178
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
+ + L ++ + + R+ + L + ++ L +
Sbjct: 179 LQQAYQMQLDRPQIRQMDPG----LVYNAVRDGLVDAGLVYTTDGRVKGFDLKVLEDDKG 234
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRT 275
+V VVR + L+ P + L + + + + + + + Q V
Sbjct: 235 FF--PSYAVTPVVRKEVLEANPGLDDALNTLSGLLNNDVISTLNAQVDIEHRTPQQVAHQ 292
Query: 276 MLRTHPDLLKN 286
+++
Sbjct: 293 FFAGQRSAVRS 303
>gi|255971318|ref|ZP_05421904.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecalis T1]
gi|255973937|ref|ZP_05424523.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecalis T2]
gi|256761622|ref|ZP_05502202.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecalis T3]
gi|255962336|gb|EET94812.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecalis T1]
gi|255966809|gb|EET97431.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecalis T2]
gi|256682873|gb|EEU22568.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecalis T3]
Length = 306
Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats.
Identities = 31/289 (10%), Positives = 72/289 (24%), Gaps = 27/289 (9%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFR 69
S+ V ++ ++ + ++E KTN+ + +
Sbjct: 19 AGCSLPGLASTSDDNTVAITGGITSEAQILGSIVADMVEHYTDKKTNVINNLATTTINHQ 78
Query: 70 SLKNKGIDIFMGYWY---------------PSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
++ N I + P + E + G +
Sbjct: 79 AMLNGDASISAARYTGTDVTTTLGLPAEKDPKKAFNLVQSEFEKRYQQTWFPSYGFENTY 138
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
+ + ++ K + G++ + + + K +
Sbjct: 139 VFLVTKETAEKYNLKTVSDLGKVADKLVAGVDTAWITREG-----DGYEGFKKEYNFQFK 193
Query: 175 SE-LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
S + V L + ++ L + F VV
Sbjct: 194 SILPMQIGLVYDAVNAGKMDVILGYSTDGRIGSYDLVMLKD--DKRFFPPYDAAPVVSDK 251
Query: 234 YLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
L + P I +L + K S E+ N+ + V L+ +
Sbjct: 252 LLKETPEIKDVLNRLDGKISTKKMQELNYQADNDLIEPAVVAERFLKEN 300
>gi|94309745|ref|YP_582955.1| substrate-binding region of ABC-type glycine betaine transport
system [Cupriavidus metallidurans CH34]
gi|93353597|gb|ABF07686.1| Putative substrate-binding region of ABC-type glycine betaine
transport system: QATfamily [Cupriavidus metallidurans
CH34]
Length = 316
Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats.
Identities = 40/297 (13%), Positives = 80/297 (26%), Gaps = 28/297 (9%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL-A 63
L + + AR + PVR +T+ ++MTS L G T +
Sbjct: 24 LGAAFAAILLTTAPARAQSASDPVRIGGKNFTEQLILSSMTSQYLRAH-GVDTTLTAGLG 82
Query: 64 VPVTFRSLKNKGIDIFMGY---------------WYPSLEKFIAPYLEEGSIKLVAENLQ 108
+ +++++ +D+ Y P + + + +
Sbjct: 83 STLMRQAMESGQLDVVWDYTGTALIVFNKVEEKLDGPQSYARVKALDAAKGLVWLDPSAI 142
Query: 109 GAKYMLAVNDVGFALGIKSYQDIAKYKKELGAK---IYGIEPGNEGNQRILDMINNNKFS 165
Y LA+ K + + K + + +
Sbjct: 143 NNTYALAMPKERAGTATTLSAYAEKMRADGEDKRHPLAVDMEFAARPDGLEPLKAAYGLP 202
Query: 166 LKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEAS 225
+I+ + +NN + L + ++ L +
Sbjct: 203 FTRKDVIQLDPG----LVYTALKNNQVDLGLVYTTDGRVKGFDLVLLEDDLNFF--PPYN 256
Query: 226 VYTVVRSDYLDKCPN--ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
VVR LD P K A +M + ++Q V LR+H
Sbjct: 257 AVPVVRKAALDAHPELADLLNALAAKLDNAAMTDMNYQVDIDQQPVDKVAGDFLRSH 313
>gi|296110685|ref|YP_003621066.1| glycine betaine/carnitine/choline ABC transporter, substratebinding
and permease protein [Leuconostoc kimchii IMSNU 11154]
gi|295832216|gb|ADG40097.1| glycine betaine/carnitine/choline ABC transporter, substratebinding
and permease protein [Leuconostoc kimchii IMSNU 11154]
Length = 504
Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats.
Identities = 30/300 (10%), Positives = 83/300 (27%), Gaps = 35/300 (11%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK---TNIKL 61
L LF+ + + + A ++ M + ++++
Sbjct: 212 LLAFLFIGGSLLPLLPQTRASQTITIAGKLGSEPEILINMYAALIKQAQPNTKIVLKPSF 271
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE-------------------EGSIKL 102
+ +L++ IDI+ + P ++ + ++ L
Sbjct: 272 GVTTFLYSALESNKIDIYPEFTGTITSSLAKPAVKLPIGANAQVTYAAAKKVAKKENLFL 331
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
Y +AV+ + ++ A + + + + +
Sbjct: 332 TRPLRFNDTYAIAVSQKDAKKYQLNTIGDLRHLPSAKAGMTA--EFLDRSDGMPGVEKAY 389
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
++ L + R N V ++ + ++ L +
Sbjct: 390 NLNIPKVSLDP-------ALRYRAVAQNQVNVVDAYATDSQLAQYHLKVLTDDQNFF--P 440
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+++SD+ P I L + + + M + + + V ++ LR H
Sbjct: 441 VYQGVALMKSDFAKNNPKIVVALDQLAGRITNTEMQNMNYAVNVKHESAEKVAQSYLRAH 500
>gi|254513331|ref|ZP_05125396.1| ABC Glycine betaine/L-proline transporter, periplasmic ligand
binding protein [Rhodobacteraceae bacterium KLH11]
gi|221532335|gb|EEE35331.1| ABC Glycine betaine/L-proline transporter, periplasmic ligand
binding protein [Rhodobacteraceae bacterium KLH11]
Length = 330
Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats.
Identities = 41/316 (12%), Positives = 88/316 (27%), Gaps = 33/316 (10%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKLLA 63
A L T + + VR + + L + LGY + +
Sbjct: 10 FAATTILATSAFAADDKPGEGVTVRPVIQPIAEEIFQHRILFRALND-LGYDVAEPEEVQ 68
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+L D +W + F + ++ V + GA VN +
Sbjct: 69 AQTLHLALGTGDADFTAVHWNGLHDTFFQESGGDEVLEKVGTLIDGALQGYLVNKAAYDA 128
Query: 124 GIKSYQDIAKYKKELGAK--------IYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
G+++ D+ +K + G PG + I ++ +
Sbjct: 129 GVQNLGDLKDPEKAALFDADGDGKADLAGCVPGWGCERVIEHQLDEFGLR-NTVNHNQGE 187
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPI-------------------NSDLNIHYLPGGE 216
A + ++ +W P+ + D
Sbjct: 188 YNAIIADTIARNEGGENVLYYTWTPYWVSGVLVPGENVEFLAVPYSALPDGATAETTFDG 247
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV---G 273
+ GF S+ V ++L+ P ++L + K + + K I + + +
Sbjct: 248 KDLGFAVDSIRVVATDEFLEANPAAAKLFQVAKIDINDISAQNKKIADGEDSSDDIDRHV 307
Query: 274 RTMLRTHPDLLKNWLI 289
+ + +WL
Sbjct: 308 DEWIAANQAAYDSWLE 323
>gi|312901594|ref|ZP_07760866.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0470]
gi|311291315|gb|EFQ69871.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0470]
Length = 307
Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats.
Identities = 31/289 (10%), Positives = 71/289 (24%), Gaps = 27/289 (9%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFR 69
S V ++ ++ + ++E KTN+ + +
Sbjct: 20 AGCSFPGLASTSDDNTVAITGGITSEAQILGSIVADMVEHYTDKKTNVINNLATTTINHQ 79
Query: 70 SLKNKGIDIFMGYWY---------------PSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
++ N I + P + E + G +
Sbjct: 80 AMLNGDASISAARYTGTDVTTTLGLPAEKDPKKAFNLVQSEFEKRYQQTWFPSYGFENTY 139
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
+ + ++ K + G++ + + + K +
Sbjct: 140 VFLVTKETAEKYNLKTVSDLGKVADKLVAGVDTAWITREG-----DGYEGFKKEYNFQFK 194
Query: 175 SE-LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
S + V L + ++ L + F VV
Sbjct: 195 SILPMQIGLVYDAVNAGKMDVILGYSTDGRIGSYDLVMLKD--DKRFFPPYDAAPVVSDK 252
Query: 234 YLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
L + P I +L + K S E+ N+ + V L+ +
Sbjct: 253 LLKETPEIKDVLNRLDGKISTKKMQELNYQADNDLIEPAVVAERFLKEN 301
>gi|284044715|ref|YP_003395055.1| substrate-binding region of ABC-type glycine betaine transporter
[Conexibacter woesei DSM 14684]
gi|283948936|gb|ADB51680.1| Substrate-binding region of ABC-type glycine betaine transport
system [Conexibacter woesei DSM 14684]
Length = 322
Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats.
Identities = 41/286 (14%), Positives = 78/286 (27%), Gaps = 33/286 (11%)
Query: 20 RDADSCTP-VRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGI 76
P V +T+ + LE GY N+K + + R+L++ I
Sbjct: 48 ATPGEGKPAVTLGTKNFTEQFVLGELYKQALEAR-GYTVNLKENIGSTEIADRALRSDQI 106
Query: 77 DIFMGYWY-------------PSLEKFI---APYLEEGSIKLVAENLQGAKYMLAVNDVG 120
D++ Y P +E Y E L+ LAV
Sbjct: 107 DMYPEYIGIFNNVVAGDTKTYPDVEASFAAGKAYAERNGFTLLPLTPFSDTDGLAVLPDY 166
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
S +A + G ++ + + + F +
Sbjct: 167 AREHGLS--SLADLTRVPGFRLGAAPEFRRRATGLPGLERAYGITDVEF------SPLTI 218
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD-YLDKCP 239
+ N V + L + I GF +V VV + ++ P
Sbjct: 219 GLQYQAIDNGKIDVAQIFTTDGQLEGGRYVVLRDPKNIFGF--QNVTPVVSTRVLDEQGP 276
Query: 240 NISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRTHPDL 283
+ + + M + ++Q + V + L + L
Sbjct: 277 EFETTVDAVSQLLTTEAMQRMNAAVAIDRQQPEEVAKAFLSANGQL 322
>gi|229546708|ref|ZP_04435433.1| glycine/betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, binding protein [Enterococcus
faecalis TX1322]
gi|256854288|ref|ZP_05559652.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecalis T8]
gi|307292456|ref|ZP_07572310.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0411]
gi|229308168|gb|EEN74155.1| glycine/betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, binding protein [Enterococcus
faecalis TX1322]
gi|256709848|gb|EEU24892.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecalis T8]
gi|306496487|gb|EFM66050.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0411]
gi|315029035|gb|EFT40967.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX4000]
Length = 307
Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats.
Identities = 31/289 (10%), Positives = 72/289 (24%), Gaps = 27/289 (9%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFR 69
S+ V ++ ++ + ++E KTN+ + +
Sbjct: 20 AGCSLPGLASTSDDNTVAITGGITSEAQILGSIVADMVEHYTDKKTNVINNLATTTINHQ 79
Query: 70 SLKNKGIDIFMGYWY---------------PSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
++ N I + P + E + G +
Sbjct: 80 AMLNGDASISAARYTGTDVTTTLGLPAEKDPKKAFNLVQSEFEKRYQQTWFPSYGFENTY 139
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
+ + ++ K + G++ + + + K +
Sbjct: 140 VFLVTKETAEKYNLKTVSDLGKIADKLVAGVDTAWITREG-----DGYEGFKKEYNFQFK 194
Query: 175 SE-LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
S + V L + ++ L + F VV
Sbjct: 195 SILPMQIGLVYDAVNAGKMDVILGYSTDGRIGSYDLVMLKD--DKRFFPPYDAAPVVSDK 252
Query: 234 YLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
L + P I +L + K S E+ N+ + V L+ +
Sbjct: 253 LLKETPEIKDVLNRLDGKISTKKMQELNYQADNDLIEPAVVAERFLKEN 301
>gi|29375451|ref|NP_814605.1| glycine betaine/carnitine/choline ABC transporter, glycine
betaine/carnitine/choline-binding protein [Enterococcus
faecalis V583]
gi|227520110|ref|ZP_03950159.1| glycine/betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, binding protein [Enterococcus
faecalis TX0104]
gi|227554975|ref|ZP_03985022.1| glycine/betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, binding protein [Enterococcus
faecalis HH22]
gi|229548801|ref|ZP_04437526.1| glycine/betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, binding protein [Enterococcus
faecalis ATCC 29200]
gi|256617736|ref|ZP_05474582.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecalis ATCC 4200]
gi|256957275|ref|ZP_05561446.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecalis DS5]
gi|256959991|ref|ZP_05564162.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecalis Merz96]
gi|256964313|ref|ZP_05568484.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecalis HIP11704]
gi|257077751|ref|ZP_05572112.1| periplasmic transporter OpuCC [Enterococcus faecalis JH1]
gi|257081111|ref|ZP_05575472.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecalis E1Sol]
gi|257083780|ref|ZP_05578141.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecalis Fly1]
gi|257086205|ref|ZP_05580566.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecalis D6]
gi|257089277|ref|ZP_05583638.1| ABC glycine betaine/carnitine/choline transporter [Enterococcus
faecalis CH188]
gi|257415430|ref|ZP_05592424.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecalis AR01/DG]
gi|257418461|ref|ZP_05595455.1| ABC glycine betaine/carnitine/choline transporter [Enterococcus
faecalis T11]
gi|257421112|ref|ZP_05598102.1| ABC glycine betaine/carnitine/choline transporter [Enterococcus
faecalis X98]
gi|293383742|ref|ZP_06629649.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Enterococcus faecalis
R712]
gi|293388782|ref|ZP_06633275.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Enterococcus faecalis
S613]
gi|294781276|ref|ZP_06746622.1| ABC transporter, substrate-binding protein, QAT family
[Enterococcus faecalis PC1.1]
gi|307267942|ref|ZP_07549330.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX4248]
gi|307271863|ref|ZP_07553131.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0855]
gi|307277301|ref|ZP_07558403.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX2134]
gi|307278440|ref|ZP_07559515.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0860]
gi|307286672|ref|ZP_07566758.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0109]
gi|312904423|ref|ZP_07763583.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0635]
gi|312907043|ref|ZP_07766039.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis DAPTO
512]
gi|312952867|ref|ZP_07771728.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0102]
gi|312978701|ref|ZP_07790428.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Enterococcus faecalis DAPTO
516]
gi|29342911|gb|AAO80675.1| glycine betaine/carnitine/choline ABC transporter, glycine
betaine/carnitine/choline-binding protein [Enterococcus
faecalis V583]
gi|227072454|gb|EEI10417.1| glycine/betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, binding protein [Enterococcus
faecalis TX0104]
gi|227175884|gb|EEI56856.1| glycine/betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, binding protein [Enterococcus
faecalis HH22]
gi|229306030|gb|EEN72026.1| glycine/betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, binding protein [Enterococcus
faecalis ATCC 29200]
gi|256597263|gb|EEU16439.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecalis ATCC 4200]
gi|256947771|gb|EEU64403.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecalis DS5]
gi|256950487|gb|EEU67119.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecalis Merz96]
gi|256954809|gb|EEU71441.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecalis HIP11704]
gi|256985781|gb|EEU73083.1| periplasmic transporter OpuCC [Enterococcus faecalis JH1]
gi|256989141|gb|EEU76443.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecalis E1Sol]
gi|256991810|gb|EEU79112.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecalis Fly1]
gi|256994235|gb|EEU81537.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecalis D6]
gi|256998089|gb|EEU84609.1| ABC glycine betaine/carnitine/choline transporter [Enterococcus
faecalis CH188]
gi|257157258|gb|EEU87218.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecalis ARO1/DG]
gi|257160289|gb|EEU90249.1| ABC glycine betaine/carnitine/choline transporter [Enterococcus
faecalis T11]
gi|257162936|gb|EEU92896.1| ABC glycine betaine/carnitine/choline transporter [Enterococcus
faecalis X98]
gi|291078818|gb|EFE16182.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Enterococcus faecalis
R712]
gi|291081939|gb|EFE18902.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein [Enterococcus faecalis
S613]
gi|294451612|gb|EFG20068.1| ABC transporter, substrate-binding protein, QAT family
[Enterococcus faecalis PC1.1]
gi|295113931|emb|CBL32568.1| Periplasmic glycine betaine/choline-binding (lipo)protein of an
ABC-type transport system (osmoprotectant binding
protein) [Enterococcus sp. 7L76]
gi|306502150|gb|EFM71434.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0109]
gi|306504946|gb|EFM74141.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0860]
gi|306506008|gb|EFM75176.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX2134]
gi|306511369|gb|EFM80371.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0855]
gi|306515583|gb|EFM84110.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX4248]
gi|310627028|gb|EFQ10311.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis DAPTO
512]
gi|310629170|gb|EFQ12453.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0102]
gi|310632250|gb|EFQ15533.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0635]
gi|311288408|gb|EFQ66964.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Enterococcus faecalis DAPTO
516]
gi|315027051|gb|EFT38983.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX2137]
gi|315032353|gb|EFT44285.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0017]
gi|315034388|gb|EFT46320.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0027]
gi|315145168|gb|EFT89184.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX2141]
gi|315148023|gb|EFT92039.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX4244]
gi|315149624|gb|EFT93640.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0012]
gi|315153150|gb|EFT97166.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0031]
gi|315155169|gb|EFT99185.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0043]
gi|315157703|gb|EFU01720.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0312]
gi|315163076|gb|EFU07093.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0645]
gi|315165062|gb|EFU09079.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX1302]
gi|315167873|gb|EFU11890.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX1341]
gi|315171768|gb|EFU15785.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX1342]
gi|315174892|gb|EFU18909.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX1346]
gi|315574098|gb|EFU86289.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis
TX0309B]
gi|315577226|gb|EFU89417.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis TX0630]
gi|315581753|gb|EFU93944.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Enterococcus faecalis
TX0309A]
gi|323480046|gb|ADX79485.1| glycine betaine/carnitine/choline transport protein OpuC
[Enterococcus faecalis 62]
gi|327534446|gb|AEA93280.1| glycine/betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, binding protein [Enterococcus
faecalis OG1RF]
gi|329577855|gb|EGG59276.1| glycine betaine/carnitine/choline-binding protein [Enterococcus
faecalis TX1467]
Length = 307
Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats.
Identities = 31/289 (10%), Positives = 72/289 (24%), Gaps = 27/289 (9%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFR 69
S+ V ++ ++ + ++E KTN+ + +
Sbjct: 20 AGCSLPGLASTSDDNTVAITGGITSEAQILGSIVADMVEHYTDKKTNVINNLATTTINHQ 79
Query: 70 SLKNKGIDIFMGYWY---------------PSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
++ N I + P + E + G +
Sbjct: 80 AMLNGDASISAARYTGTDVTTTLGLPAEKDPKKAFNLVQSEFEKRYQQTWFPSYGFENTY 139
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
+ + ++ K + G++ + + + K +
Sbjct: 140 VFLVTKETAEKYNLKTVSDLGKVADKLVAGVDTAWITREG-----DGYEGFKKEYNFQFK 194
Query: 175 SE-LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
S + V L + ++ L + F VV
Sbjct: 195 SILPMQIGLVYDAVNAGKMDVILGYSTDGRIGSYDLVMLKD--DKRFFPPYDAAPVVSDK 252
Query: 234 YLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
L + P I +L + K S E+ N+ + V L+ +
Sbjct: 253 LLKETPEIKDVLNRLDGKISTKKMQELNYQADNDLIEPAVVAERFLKEN 301
>gi|116629363|ref|YP_814535.1| ABC-type proline/glycine betaine transport system, permease and
substrate binding protein [Lactobacillus gasseri ATCC
33323]
gi|238854212|ref|ZP_04644557.1| ABC-type proline/glycine betaine transport system, permease and
substrate binding protein [Lactobacillus gasseri 202-4]
gi|282850966|ref|ZP_06260340.1| ABC transporter, substrate-binding protein, QAT family
[Lactobacillus gasseri 224-1]
gi|311110982|ref|ZP_07712379.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Lactobacillus gasseri
MV-22]
gi|116094945|gb|ABJ60097.1| ABC-type proline/glycine betaine transport system, permease and
substrate binding protein [Lactobacillus gasseri ATCC
33323]
gi|238833148|gb|EEQ25440.1| ABC-type proline/glycine betaine transport system, permease and
substrate binding protein [Lactobacillus gasseri 202-4]
gi|282557918|gb|EFB63506.1| ABC transporter, substrate-binding protein, QAT family
[Lactobacillus gasseri 224-1]
gi|311066136|gb|EFQ46476.1| glycine betaine/L-proline ABC transporter, permease/glycine
betaine/L-proline-binding protein [Lactobacillus gasseri
MV-22]
Length = 516
Score = 116 bits (289), Expect = 6e-24, Method: Composition-based stats.
Identities = 34/309 (11%), Positives = 79/309 (25%), Gaps = 41/309 (13%)
Query: 4 ILAVCLFLT---------TFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEI-L 53
I+ + L S S A+ + A ++ A M ++E+
Sbjct: 214 IIIAVILLIWGGSSLYTHFTSTSKNNIAEPKQTITIAGKMGSEPAILINMYKDLIEKNDP 273
Query: 54 GYKT--NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIA------------------P 93
K F++L+ +DI+ + L+ +
Sbjct: 274 NTKVVLKPNFGGTTFLFKALQTDKVDIYPEFTGTVLQTLVKTGKKTGNDPNQVYVEARSD 333
Query: 94 YLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQ 153
++ ++ + Y LA + + +
Sbjct: 334 LKKQFDMEYLKPMAYQNGYALATTQKFAKDNHLTKMSDLNRVNKKVHAAF-DPDFTSLKD 392
Query: 154 RILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLP 213
+ K + E+S NN + + N+ L
Sbjct: 393 GYPGLKKIYKLDFASIKSTESSIR------YHAIANNQANIVDGYTTDAEIKKYNLVMLD 446
Query: 214 GGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQF 271
++ ++++ + ++ P I + L + K + EM + +
Sbjct: 447 DDKKFF--PPYQGAPLMKAKFAERNPQIVKALNKLAGKITTQEMQEMNYQVNVKHEKPAK 504
Query: 272 VGRTMLRTH 280
V L H
Sbjct: 505 VAHDYLVKH 513
>gi|255022636|ref|ZP_05294622.1| similiar to glycine betaine/carnitine/choline ABC transporter
[Listeria monocytogenes FSL J1-208]
Length = 482
Score = 116 bits (289), Expect = 6e-24, Method: Composition-based stats.
Identities = 35/281 (12%), Positives = 81/281 (28%), Gaps = 32/281 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
++ + LT I A + A + M +++E+ K N+K
Sbjct: 212 TISAGILLTAAIIVVPYFASDKKEITIAGKLGAEPEILINMYKLVIEDETDLKVNVKPNM 271
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP-----------------YLEEGSIKLVA 104
F +LK+ IDI+ + LE F+ ++ + +
Sbjct: 272 GKTSFVFNALKSGDIDIYPEFTGTVLETFLKENAKTHDPEEVYTQARDGLAKDFDMTYLK 331
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKF 164
Y LAV+ K + D + K
Sbjct: 332 PMKYNNTYALAVSPEFAKENXLE--------KISDLGPVSDQVKAGFTLEFKDRSDGYKG 383
Query: 165 SLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+ L ++ ++ ++ + ++ + + L +++
Sbjct: 384 IQDKYGLTFSNLKTMEPKLRYNAIKSGDINLLDAYSTDSELAQYKLKVLEDDQQLF--PP 441
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLI 262
++ + LDK P + + L + K + +M +
Sbjct: 442 YQGAPLMLTKTLDKYPELKKPLNKLAGKITDDEMRKMNYEV 482
>gi|296271877|ref|YP_003654508.1| glycine betaine ABC transporter substrate-binding protein
[Arcobacter nitrofigilis DSM 7299]
gi|296096052|gb|ADG92002.1| Substrate-binding region of ABC-type glycine betaine transport
system [Arcobacter nitrofigilis DSM 7299]
Length = 322
Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats.
Identities = 39/324 (12%), Positives = 97/324 (29%), Gaps = 43/324 (13%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M KIL + + S + V F T + + + I++ LGY I
Sbjct: 1 MKKILIALIAIFLTSNLFGA------KVTFLRTSIAEEGFQMYIAADIVK-RLGYDVEIT 53
Query: 61 -----LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
+A ++ K+K I W P I I ++ ++
Sbjct: 54 NDVSYEVAYQTIAQNAKSKDAYIMAAAWIPLHNSKIKGAGGSKKIDIIGSYIKNCAQGYL 113
Query: 116 VNDVGFALGIKSYQD---------IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSL 166
++ Y + + + A + G + G + I ++
Sbjct: 114 IDKKTAEKYNIKYINDLKDPKIAKLFDSNGDGKADLAGCDAGWGCEKVIEYQLDAFGLRD 173
Query: 167 KGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP----INSDLNIHYLPGGEEISGFG 222
+ + + ++ P ++ +W P+ + + +L
Sbjct: 174 T-VEHNQGQYSSIITDTIARYKSGKPILYYTWTPYWVSGKLVPGKDTVFLQVTHSAHPVT 232
Query: 223 EASVYT--------------VVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQD 268
+++ V + +I++LL+ ++ V + L+ +
Sbjct: 233 KSTKLPNGADYGFNVNTQDFAVNASLPKNYKDIAKLLEVMRLDVNDVSGENMLMEQGQNK 292
Query: 269 RQFV---GRTMLRTHPDLLKNWLI 289
+ + L+++ D + W+
Sbjct: 293 EADIKRHAQMWLKSNADKVNKWIA 316
>gi|330949873|gb|EGH50133.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae Cit 7]
Length = 257
Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats.
Identities = 39/236 (16%), Positives = 69/236 (29%), Gaps = 22/236 (9%)
Query: 1 MY---KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M ++L L A A+ P++F W + T + I+E+ GY T
Sbjct: 1 MKSITRLLGCSLLALGLLGQTATAAEKTKPIQFGALTWESGSLITEVLRTIVEKGYGYPT 60
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+ + +L I + W EEG + + ++GA V
Sbjct: 61 DTLPGSTVSLETALAKNDIQVIAEEW-TGRSPVWVKAEEEGKVLGLGNIVKGATEGWWVP 119
Query: 118 DVGFA-----------LGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMI 159
+ +KS D+A+YK + G +
Sbjct: 120 EYVIKGDAAKGIKPLAPDLKSVADLARYKDVFKDPESPDKGRFLNSPSGWTSEIVNTQKL 179
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG 215
+ S A +++ R P +F W P P+ + L
Sbjct: 180 KAYGLADSFVNFRTGSGAALDAEVASTIRRRKPVLFYYWSPTPLLGKYKLIKLDEP 235
>gi|228475587|ref|ZP_04060305.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Staphylococcus hominis SK119]
gi|228270369|gb|EEK11804.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Staphylococcus hominis SK119]
Length = 314
Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats.
Identities = 44/275 (16%), Positives = 104/275 (37%), Gaps = 8/275 (2%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA-VPVTFRSLKNKGIDIFMGYW 83
+ + A + + + +L++ GY + + ++
Sbjct: 43 DKTIEIPYIASDNSTARSLVIAEVLKKA-GYDVTTTPVPASGPLYATVSASDDAFHASGI 101
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQG-AKYMLAVNDVGFALG-IKSYQDIAKYKKELGAK 141
+P +K ++ ++L LAV + IK +D + K +
Sbjct: 102 FPETDKRYYDKFKDTLTLYDDKHLIDHVNVGLAVPKYVQNIDSIKDLKDDKDFGKSVDWT 161
Query: 142 IYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPH 201
I G + N Q+ D ++ + S + L ++S+ F +I++ + P +F S EP+
Sbjct: 162 IQGTDNRNGVMQQTNDELDRDDLSK--YSLDKSSDQEQFKKIQKAYQQQQPILFTSMEPN 219
Query: 202 PINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMM 259
+ +L++ L ++I G + + V ++ +K P + + + E +
Sbjct: 220 WFSKELDVKMLKDPDKIYGNNKQHIDLVFNHNFKEKHPAAYDIATRMAKDWDQKDEERLA 279
Query: 260 KLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTF 294
K I ++ + V + + H + +WL + T
Sbjct: 280 KNIFVKSKNPEQVAKDYVDNHDHNVDDWLKDIDTK 314
>gi|157145836|ref|YP_001453155.1| hypothetical protein CKO_01587 [Citrobacter koseri ATCC BAA-895]
gi|157083041|gb|ABV12719.1| hypothetical protein CKO_01587 [Citrobacter koseri ATCC BAA-895]
Length = 300
Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats.
Identities = 38/283 (13%), Positives = 86/283 (30%), Gaps = 33/283 (11%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRSLKNKGIDIFMG 81
P+ A G+T+ +AMT L++ G++ +A ++ ++ NK IDI
Sbjct: 21 AQAAPLILATKGFTEQHILSAMTVQYLQKK-GFQVQPRTNIAAVISRNAMVNKQIDITWE 79
Query: 82 YWYPS---------------LEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIK 126
Y S + + + + Y A+
Sbjct: 80 YTGTSLIIFNHIDKRMSPQESYDTVKRLDAKLGLVWLNPANMNNTYAFAMQRKRAEAENI 139
Query: 127 SYQD--------IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ I + + + + + + + + + L ++ +
Sbjct: 140 NTLSEMVAKIEHIRQTDPDNNWMLGLDLEFSGRSDGMKPLQDAYQMQLDRPQIRQMDPG- 198
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+ R+ L + ++ L + +V VVR + LD
Sbjct: 199 ---LVYNAVRDGFVDAGLVYTTDGRVKGFDLKVLEDDKGFF--PGYAVTPVVRKEILDAH 253
Query: 239 PNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
P + L + + + + + + + Q Q V RT L+
Sbjct: 254 PGLDDALNTLSGLLNNDVISTLNAQVDIDHQSPQQVARTFLQQ 296
>gi|314935439|ref|ZP_07842791.1| putative ABC transporter, substrate-binding protein [Staphylococcus
hominis subsp. hominis C80]
gi|313656004|gb|EFS19744.1| putative ABC transporter, substrate-binding protein [Staphylococcus
hominis subsp. hominis C80]
Length = 314
Score = 115 bits (288), Expect = 8e-24, Method: Composition-based stats.
Identities = 44/275 (16%), Positives = 104/275 (37%), Gaps = 8/275 (2%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA-VPVTFRSLKNKGIDIFMGYW 83
+ + A + + + +L++ GY + + ++
Sbjct: 43 DKTIEIPYIASDNSTARSLVIAEVLKKA-GYDVTTTPVPASGPLYATVSASDDAFHASGI 101
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQG-AKYMLAVNDVGFALG-IKSYQDIAKYKKELGAK 141
+P +K ++ ++L LAV + IK +D + K +
Sbjct: 102 FPETDKRYYDKFKDTLTLYDDKHLIDHVNVGLAVPKYVQNIDSIKDLKDDKDFGKSVDWT 161
Query: 142 IYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPH 201
I G + N Q+ D ++ + S + L ++S+ F +I++ + P +F S EP+
Sbjct: 162 IQGTDNRNGVMQQTNDELDRDDLSK--YSLDKSSDQEQFKKIQKAYQQQQPILFTSMEPN 219
Query: 202 PINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMM 259
+ +L++ L ++I G + + V ++ +K P + + + E +
Sbjct: 220 WFSKELDVKMLKDPDKIYGNNKQHIDLVFNHNFKEKHPAAYDIATRMAKDWDQKDEERLA 279
Query: 260 KLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTF 294
K I ++ + V + + H + +WL + T
Sbjct: 280 KNIFVKSKNPEQVAKDYVDNHDHNVDDWLKDIDTK 314
>gi|326803525|ref|YP_004321343.1| glycine betaine/carnitine/choline-binding protein [Aerococcus
urinae ACS-120-V-Col10a]
gi|326650131|gb|AEA00314.1| glycine betaine/carnitine/choline-binding protein [Aerococcus
urinae ACS-120-V-Col10a]
Length = 318
Score = 115 bits (288), Expect = 8e-24, Method: Composition-based stats.
Identities = 32/307 (10%), Positives = 81/307 (26%), Gaps = 35/307 (11%)
Query: 1 MYKI------LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
M +I L + LT+ S+ +A + A G T+ + ++E +
Sbjct: 1 MKRIIKSILALISVVLLTSCSLPGLSNAADSDTITIASLGSTEAEIMGFIVEGMVEHYIP 60
Query: 55 YKTNIKL--LAVPVTFRSLKNKGIDIFMGYWYPSL-----------------EKFIAPYL 95
N + + +L+ ++ + + EK + +
Sbjct: 61 IDANRITNLGSSSMNHAALQTGDANVASVRYTGTSLTGELGQEPITDPQLALEKVVKGFE 120
Query: 96 EEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRI 155
+E Y V + ++ ++ G++ +
Sbjct: 121 KEFDQTWYPTYGFANTYAFMVRREDAEE--LGLEKVSDLEQYADTFKVGVDNSWLEREGD 178
Query: 156 LDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG 215
+ L + + N V L + ++ L
Sbjct: 179 GYDGFVQTYGFDFDNLYP----MAIGLVYTAIANGEIDVALGYSTDGRIISEDLKVLED- 233
Query: 216 EEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVG 273
+ F V ++ + P++ +++ + S + N + V
Sbjct: 234 -DRHLFPPYDASPVATNEIRARYPDLDKVMAKLAGAISNEEMQRLNFTADNYLLEPSTVA 292
Query: 274 RTMLRTH 280
+ L H
Sbjct: 293 KEWLLRH 299
>gi|126730771|ref|ZP_01746581.1| ABC transporter binding protein [Sagittula stellata E-37]
gi|126708937|gb|EBA07993.1| ABC transporter binding protein [Sagittula stellata E-37]
Length = 305
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 35/303 (11%), Positives = 81/303 (26%), Gaps = 27/303 (8%)
Query: 10 FLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFR 69
L+ D P++ TG TD + + LE+ G++ F
Sbjct: 3 VLSMLMCGPVAAEDQSGPIKIVVTGITDADFIANVYATFLEQQ-GFEVERIKADYAAQFV 61
Query: 70 SLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA--LGIKS 127
L+ +D W S L G + + + G+
Sbjct: 62 GLEAGDLDFSTSIWETS-RDIFDAALATGDVVNMGATGVKIREGWWYPTYVEEVCPGLPD 120
Query: 128 YQDIAK-YKKELGAKIYGIE----PGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
++ + + E + I + ++ L + A +
Sbjct: 121 WKALLETDCVEALSTIETSPLARFVEAPADWTTNNVARVKSLELPYSLESTGTPAALHAA 180
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE------------------EISGFGEA 224
I + P + + P + ++ ++ +
Sbjct: 181 IVGPMQRKEPVIGWGFAPDWMTTEYEGKFVEFPDFELDCINDPAWGADPNEIWDCDNPAG 240
Query: 225 SVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLL 284
V+ V + K P +R+L+ + ++ + + D L + D+
Sbjct: 241 YVWKVAHAGSEAKFPRAARILRLFQLKTDDVAWGVRRVDVDGVDSIEAATEWLAENADIT 300
Query: 285 KNW 287
+W
Sbjct: 301 ADW 303
>gi|240137084|ref|YP_002961553.1| ABC transporter, periplasmic protein, putative glycine/betaine
transporter [Methylobacterium extorquens AM1]
gi|240007050|gb|ACS38276.1| ABC transporter, periplasmic protein, putative glycine/betaine
transporter [Methylobacterium extorquens AM1]
Length = 303
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 38/299 (12%), Positives = 85/299 (28%), Gaps = 28/299 (9%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--LL 62
L + A+ P+ T+ A + S++LE+ LG + + L
Sbjct: 4 LGFLAAAVAAMLPIHARAEPGRPIVIGSKSDTEGALLGNLISLVLED-LGLRVERRLGLG 62
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS-----------------IKLVAE 105
+ +L ID++ Y + +
Sbjct: 63 PTLIVRSALLAGEIDLYPEYTGNVAFFSGTETDPAWKNNAGAYGLALRLDAAHGLVWLGR 122
Query: 106 NLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKF 164
+++AV G+ + D A ++ ++ E + + F
Sbjct: 123 APANNTWLIAVQGRLARERGLATMADFAGAVRDGAIRLAASTEFVESPAALPSFESAYGF 182
Query: 165 SLKGFRLIEASELASFSQIRRDQRNNI--PAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
SL R++ + + R I + + + L++ + +
Sbjct: 183 SLPLSRIV-SLPGGDTAVTARAAAEGISGINAGMVYGTDGALAALDLTVMSDPKGAQI-- 239
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
V+R+ L++ P I L I + + I + + V + L
Sbjct: 240 VYEPAPVIRAATLERHPRIREALDPIFARLDADTLRRLNAAITVEGRTAEAVAKAWLAE 298
>gi|55669782|pdb|1SW2|A Chain A, Crystal Structure Of Prox From Archeoglobus Fulgidus In
Complex With Glycine Betaine
Length = 275
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 36/277 (12%), Positives = 86/277 (31%), Gaps = 27/277 (9%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL--AVPVTFRSLKNKGIDIF 79
+ S V + + M +++LEE GYK +K V + +LK I ++
Sbjct: 2 SQSSERVVIGSKPFNEQYILANMIAILLEEN-GYKAEVKEGLGGTLVNYEALKRNDIQLY 60
Query: 80 MGYWYPSLEKFIAPYLEEGSIK----------------LVAENLQGAKYMLAVNDVGFAL 123
+ Y + + E + +V G + A+
Sbjct: 61 VEYTGTAYNVILRKQPPELWDQQYIFDEVKKGLLEADGVVVAAKLGFRDDYALAVRADWA 120
Query: 124 GIKSYQDIAKYKKELGAKIYGIEP-GNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ I+ + ++G +P + + F K + +E +
Sbjct: 121 EENGVEKISDLAEFADQLVFGSDPEFASRPDGLPQIKKVYGFEFKEVKQMEP------TL 174
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ +N V ++ N+ L + +A + + +K ++
Sbjct: 175 MYEAIKNKQVDVIPAYTTDSRVDLFNLKILEDDKGALPPYDAIIIVNGNTAKDEKLISVL 234
Query: 243 RLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+LL++ + K+D + + + L+
Sbjct: 235 KLLEDR-IDTDTMRALNYQYDVEKKDAREIAMSFLKE 270
>gi|332704096|ref|ZP_08424184.1| ABC-type glycine betaine transport, periplasmic subunit
[Desulfovibrio africanus str. Walvis Bay]
gi|332554245|gb|EGJ51289.1| ABC-type glycine betaine transport, periplasmic subunit
[Desulfovibrio africanus str. Walvis Bay]
Length = 304
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 43/301 (14%), Positives = 100/301 (33%), Gaps = 28/301 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-- 58
M + + + L + + A+ + PV T+ A M ++L G +
Sbjct: 1 MIRTIILTLAIAVLAGLGAQPVMAQKPVIVGSKIDTEGALLGKMIVLLLRHH-GMEVQDR 59
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPS-----------------LEKFIAPYLEEGSIK 101
+L P+ +++ + +D++ Y + E +
Sbjct: 60 TELGGTPIVRQAILSGQVDLYPEYTGNGAIFFPEAPVDTWRDARKAYATVKELDAENELV 119
Query: 102 LVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKE-LGAKIYGIEPGNEGNQRILDMIN 160
+ + +AV+ G+++ +D A++ + K+ + E +
Sbjct: 120 WLPPAPANNTWAIAVSQELAGKGVRTLEDFARHISQGGNVKLAACDEFVERPDALPAFTK 179
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRNNI--PAVFLSWEPHPINSDLNIHYLPGGEEI 218
FSL +++ S + +Q + I +++ + L + L
Sbjct: 180 AYGFSLSKEQMLILS-GCNTAQTEQAAAQGIDGVNAAMAYGTDGGLAALGLTVLADP--K 236
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
S + +VR + L++ P+I +L + E+ I D + V R
Sbjct: 237 SVQPVYAPAPLVRREALERYPSIEAILPPVFSDLDQKTLQELNARISIEGLDAESVAREY 296
Query: 277 L 277
L
Sbjct: 297 L 297
>gi|289804258|ref|ZP_06534887.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Typhi str. AG3]
Length = 305
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 40/306 (13%), Positives = 83/306 (27%), Gaps = 36/306 (11%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKLLAVPVTFRSLKN 73
S A V+ + ++ + T + S LE LGY + V + S+ +
Sbjct: 1 SAFAADLPGKGITVQPIQSTISEESFQTLLVSRALE-KLGYTVNKPSEVDYNVGYTSIAS 59
Query: 74 KGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQ---- 129
W P + A + + GA ++ +
Sbjct: 60 GDATFTAVNWQPLHDDMYAAAGGDKKFYREGVFVSGAAQGYLIDKKTAEQYNITNIAQLK 119
Query: 130 -----DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
I + A + G PG I K + + A +
Sbjct: 120 DPKIAKIFDTNGDGKADMMGCSPGWGCEAVINHQNKAFDL-QKTVEVSHGNYAAMMADTI 178
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI---------------------SGFGE 223
+ P ++ +W P+ ++ + ++ GF
Sbjct: 179 TRFKEGKPVLYYTWTPYWVSDVMKPGKDVVWLQVPFSSLPGEQKNIDTKLPNGANYGFPV 238
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV---GRTMLRTH 280
+++ V + +K P ++L +K +A N ++ K V + H
Sbjct: 239 NTMHIVANKAWAEKNPAAAKLFAIMKLPLADINAQNAMMHAGKSSEADVQGHVDGWINAH 298
Query: 281 PDLLKN 286
Sbjct: 299 QQQFDA 304
>gi|303325965|ref|ZP_07356408.1| quaternary amine uptake ABC transporter (QAT) family,
substrate-binding protein [Desulfovibrio sp. 3_1_syn3]
gi|302863881|gb|EFL86812.1| quaternary amine uptake ABC transporter (QAT) family,
substrate-binding protein [Desulfovibrio sp. 3_1_syn3]
Length = 305
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 33/296 (11%), Positives = 90/296 (30%), Gaps = 30/296 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP-VRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
++A L + ++ ++ +R +T+ + ++ LE+ GY
Sbjct: 6 KAVMAAMGILAAGMLLFSCGGETKGTAIRVGTKDFTENLVVGELYALALEDA-GYTVKRV 64
Query: 61 LL-AVPVTFRSLKNKGIDIFMGYWYPSLEKFIA----------------PYLEEGSIKLV 103
A V S+ N ID++ Y L + Y ++ +
Sbjct: 65 FTIAGSVVHASIVNGEIDLYPEYTGTGLLTVLKMEAMADPAQVYATVKREYARRFNLVWL 124
Query: 104 AENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
+ LA+ GI + D+ + + ++ + +
Sbjct: 125 EPSRANDSQGLALKTSVAREFGIATISDLQR--NAHKIRFASQGEFDQRADGLPGLEQVY 182
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
+ + L + ++ + ++ +D + ++ +
Sbjct: 183 GPFRWKSSRVFDNGLKYQVLL-----DDEADLVPAYTTEGRLADTK-KFTLLRDDKHMWS 236
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
+ V+R+D L P+I+ +L + + + +K++ V +
Sbjct: 237 PYYLAPVIRADVLAAHPDIAGILNRVSASLDTGTMTALNAKVDVDKREIADVAKEF 292
>gi|300362061|ref|ZP_07058238.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Lactobacillus gasseri JV-V03]
gi|300354680|gb|EFJ70551.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Lactobacillus gasseri JV-V03]
Length = 515
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 31/290 (10%), Positives = 76/290 (26%), Gaps = 32/290 (11%)
Query: 14 FSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEI-LGYKT--NIKLLAVPVTFRS 70
F+ + A+ + A ++ A M ++E+ K F++
Sbjct: 232 FTSTSKNVAEPKQTITIAGKMGSEPAILINMYKDLIEKNDPDTKVVLKPNFGGTTFLFKA 291
Query: 71 LKNKGIDIFMGYWYPSLEKFIA------------------PYLEEGSIKLVAENLQGAKY 112
L+ +DI+ + L+ + ++ ++ + Y
Sbjct: 292 LQTDKVDIYPEFTGTVLQTLVKTGKKTGNDPNQVYVEARSDLKKQFDMEYLKPMAYQNGY 351
Query: 113 MLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
LA + + + + K +
Sbjct: 352 ALATTQKFAKDNHLTKMSDLNRVNKKVHAAF-DPDFTSLKDGYPGLKKIYKLDFASIKST 410
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRS 232
E+S NN + + N+ L ++ ++++
Sbjct: 411 ESSIR------YHAIANNQANIVDGYTTDAEIKKYNLVMLDDDKKFF--PPYQGAPLMKA 462
Query: 233 DYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ ++ P I + L + K + EM + + V L H
Sbjct: 463 KFAERNPRIVKALNKLAGKITTQEMQEMNYQVNVKHEKPAKVAHDYLVKH 512
>gi|326382329|ref|ZP_08204021.1| ABC transporter substrate-binding protein [Gordonia neofelifaecis
NRRL B-59395]
gi|326199059|gb|EGD56241.1| ABC transporter substrate-binding protein [Gordonia neofelifaecis
NRRL B-59395]
Length = 337
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 35/281 (12%), Positives = 75/281 (26%), Gaps = 31/281 (11%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPVTFRSLKNKGIDIFMG 81
V +T+ + L G + ++ +D+ +
Sbjct: 59 DGQTVTVGSKDFTEQVILGYILGFSLSAA-GANVRDLTNIQGSNSARDAMAAGQVDVTIE 117
Query: 82 YWYPSLEKFI-----------------APYLEEGSIKLVAENLQGAKYMLAVNDVGFAL- 123
Y ++ L++ I V Y LAVN
Sbjct: 118 YTGTGWINYLGNEQPIPDPTKQFEAVRDEDLKKNGIVWVNPAPMDNTYALAVNQENAQKT 177
Query: 124 GIKSYQDIAKYKKELGAKIYGI--EPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
G+ + + A K+ A M F ++
Sbjct: 178 GVSTLSEYAALVKKDPAAATTCVETEFRSRQDGFPGMAAKYGFDPAQVQMQILQTGI--- 234
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNI 241
I + N + LN++ L + F + +R D ++ P+I
Sbjct: 235 -IYQAIANGNCVFGEVFTTDGRIKALNLNVLED--DKQFFPHYNAAVSMRQDVDEQFPSI 291
Query: 242 SRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+++ + K + E+ + + ++ V R L +
Sbjct: 292 AKITAPVMAKLTSEEITELNRQVDVEGREPADVARDWLVKN 332
>gi|229815537|ref|ZP_04445864.1| hypothetical protein COLINT_02584 [Collinsella intestinalis DSM
13280]
gi|229808767|gb|EEP44542.1| hypothetical protein COLINT_02584 [Collinsella intestinalis DSM
13280]
Length = 303
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 36/280 (12%), Positives = 91/280 (32%), Gaps = 30/280 (10%)
Query: 17 SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-LAVPVTFRSLKNKG 75
S + +T+ + + ++ LE+ G+ N ++ + +++N
Sbjct: 29 GCGNSKGSENAITVGSKAFTEGVILSELYALALEDA-GFNVNRSFEISGSLIHTAIENGD 87
Query: 76 IDIFMGYWYPSLEKFIAP----------------YLEEGSIKLVAENLQGAKYMLAVNDV 119
ID++ Y L + Y + + ++++ L +
Sbjct: 88 IDLYPEYTGTGLISVLKMDPLTDPEEVYETVKSAYADRFDLVWLSKSEAADGQGLVIRTE 147
Query: 120 GFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
IK+ D+ + ++L G +E + + +AS +
Sbjct: 148 AAKKYGIKTISDLQAHAEDLRFASQG--QFDERADGLPALEATYGPFDW-----KASAIY 200
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
RN+ V ++ + + L + + +V VVR++ L+
Sbjct: 201 DEGLKYEVLRNDEADVTPAYTTEAQLTYPSFTLLED--DKHVWPPYNVAPVVRAEVLEAN 258
Query: 239 PNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTM 276
P I+ L + + + + +K+D + V +
Sbjct: 259 PGIAEALDRVNAALTTEELTRLNARVDIDKEDYEDVAKDY 298
>gi|194467572|ref|ZP_03073559.1| Substrate-binding region of ABC-type glycine betaine transport
system [Lactobacillus reuteri 100-23]
gi|194454608|gb|EDX43505.1| Substrate-binding region of ABC-type glycine betaine transport
system [Lactobacillus reuteri 100-23]
Length = 299
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 30/303 (9%), Positives = 85/303 (28%), Gaps = 33/303 (10%)
Query: 2 YKILAVCLF-----LTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
KI+A+ L L + A S P+ ++ + + ++ LE GYK
Sbjct: 4 KKIVALSLLSIAGLLAGTIMPAVASAASNKPIIVGSKNVSESKTVSEIYALALEHE-GYK 62
Query: 57 TNIKLL-AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPY----------------LEEGS 99
K + V F + + +D++ Y +E ++ +++
Sbjct: 63 VTRKPNISNNVIFSATQKGEVDVYPDYTGTIVEAYLKKKGTGKSASQMAKLAHDGIQKDG 122
Query: 100 IKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI 159
+ + +A+ + + + + + +M
Sbjct: 123 LTTFKYAPGDNRQGVAMPTKDAKKYHITNLSELQKNAK-KINFASQGEFEKRADALPEMN 181
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
++ + + + + + L +
Sbjct: 182 KVYGKFD-----FKSIKDYDVNLLYKIMEQGKAQAAPVSTTDGQLATSKFTLLKD--NKN 234
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ ++ VV P + + L + K + ++ K + + Q+ + V +
Sbjct: 235 IWPPYNLVPVVNKKAAKSHPKMEQALNKVDAKLTTKQLTDLNKKVNVDGQNYKTVAKNWY 294
Query: 278 RTH 280
+
Sbjct: 295 NQN 297
>gi|308178580|ref|YP_003917986.1| osmoprotectant (glycine betaine/carnitine/choline/L-proline) ABC
transporter substrate-binding protein [Arthrobacter
arilaitensis Re117]
gi|307746043|emb|CBT77015.1| osmoprotectant (glycine betaine/carnitine/choline/L-proline) ABC
transporter, substrate-binding protein [Arthrobacter
arilaitensis Re117]
Length = 325
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 28/274 (10%), Positives = 68/274 (24%), Gaps = 23/274 (8%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPVTFRSLKNKGIDIFMG 81
T V +T+ +T + L+ GY + + L +
Sbjct: 46 EETTVTVTSKAFTEQLLLGKITVIALKAA-GYDVTDLTNVPGSQPARQLLLAGDASVLWE 104
Query: 82 YWYPSLEKFI----------------APYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
Y + ++ I Y LA+N+
Sbjct: 105 YTGTAWLTYLGHEKPVVGEQEQWQVVHDEDVANGITWGKPAPLNNTYALAMNEETTKRLG 164
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
+ + + N + M+ + + L I +
Sbjct: 165 IAKLSELQELESDELTFCVDPEFNSRRDGLTPMLEHYGIERGSEVPEDNIGLYDVGAIYQ 224
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
N + LN+ L + + S++L+K P + +++
Sbjct: 225 ATANGACNFGEVFTTDGRIKALNLTVLEDDRKYF--PSYNAAPAFNSEFLEKHPEVQQVM 282
Query: 246 KNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
I + + ++ + ++ V +
Sbjct: 283 GQIAPLLTDQVLMDLNYQVDVVGREPADVAFEWM 316
>gi|300859959|ref|ZP_07106047.1| ABC transporter, substrate-binding protein, QAT family
[Enterococcus faecalis TUSoD Ef11]
gi|300850777|gb|EFK78526.1| ABC transporter, substrate-binding protein, QAT family
[Enterococcus faecalis TUSoD Ef11]
Length = 307
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 31/289 (10%), Positives = 72/289 (24%), Gaps = 27/289 (9%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFR 69
S+ V ++ ++ + ++E KTN+ + +
Sbjct: 20 AGCSLPGLASTSDDNTVAITGGITSEAQILGSIVADMVEHYTDKKTNVINNLATTTINHQ 79
Query: 70 SLKNKGIDIFMGYWY---------------PSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
++ N I + P + E + G +
Sbjct: 80 AMLNGDASISAARYTGTDVTTTLGLPAEKDPKKAFNLVQSEFEKRYQQTWFPSYGFENTY 139
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
+ + ++ K + G++ + + + K +
Sbjct: 140 VFLVTKETAEKYNLKTVSDLGKVTDKLVAGVDTAWITREG-----DGYEGFKKEYNFQFK 194
Query: 175 SE-LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
S + V L + ++ L + F VV
Sbjct: 195 SILPMQIGLVYDAVNAGKMDVILGYSTDGRIGSYDLVMLKD--DKRFFPPYDAAPVVSDK 252
Query: 234 YLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
L + P I +L + K S E+ N+ + V L+ +
Sbjct: 253 LLKETPEIKDVLNRLDGKISTKKMQELNYQADNDLIEPAVVAERFLKEN 301
>gi|227893676|ref|ZP_04011481.1| glycine/betaine ABC superfamily ATP binding cassette transporter
substrate binding protein [Lactobacillus ultunensis DSM
16047]
gi|227864536|gb|EEJ71957.1| glycine/betaine ABC superfamily ATP binding cassette transporter
substrate binding protein [Lactobacillus ultunensis DSM
16047]
Length = 304
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 34/281 (12%), Positives = 87/281 (30%), Gaps = 32/281 (11%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL-AVPVTFRSLKNKGIDIF 79
A + +P+ +T+ + + L++ GY K + V ++++K+ ID++
Sbjct: 34 SAKNQSPITIGSKNFTESKIVMQIYADALKKE-GYNVKTKPNISSSVVYQAIKSGQIDLY 92
Query: 80 MGYWYPSLEKFIA----------------PYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
Y ++ + + ++ + +A+
Sbjct: 93 PEYTGTIAMTYLKGHIVGKTPAQIAKIAKDGMAKQNLVTLNYAPGSDSQGIAIKTSVAKK 152
Query: 124 G-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
IK+ D+ K K + ++ I + + SE
Sbjct: 153 YGIKTISDLQK--KANKIRFASQGEFDKREDGIPGLEKVYG------KFNFKSEKIYDPS 204
Query: 183 I-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNI 241
+ + + + + + L + + ++ +VR L P I
Sbjct: 205 LKYKVLARGDGDITPASTTEGQLATKDYFALKDNKNF--WPAYNLVPLVREKTLKANPGI 262
Query: 242 SRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
++L I K + + K + + + Q V + L +
Sbjct: 263 KKILNKIDAKLTTKELTLLNKKVDVDGKSYQSVAKDWLNKN 303
>gi|307299502|ref|ZP_07579302.1| Substrate-binding region of ABC-type glycine betaine transport
system [Thermotogales bacterium mesG1.Ag.4.2]
gi|306914901|gb|EFN45288.1| Substrate-binding region of ABC-type glycine betaine transport
system [Thermotogales bacterium mesG1.Ag.4.2]
Length = 301
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 48/303 (15%), Positives = 92/303 (30%), Gaps = 33/303 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--N 58
M +++ + L FS P+ A T+ A M +LE+ G++
Sbjct: 1 MKRLILIGLLFIAFSGFAL-----KGPITVASKIDTEGALLGQMIVTVLEKN-GFEVVDK 54
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------I 100
+ V +++ IDI+ Y F +
Sbjct: 55 TEFGTTSVIRKAITAGEIDIYPEYTGNGGFFFDDTDPTVWKNAKSGYETVKTLDLERNGL 114
Query: 101 KLVAENLQGAKYMLAVNDVGFA-LGIKSYQDIAKYKKEL-GAKIYGIEPGNEGNQRILDM 158
+ + LA+ GIK+ +D+A Y K+ E +
Sbjct: 115 VWLTPAPANNTWALAIRKDISDGEGIKTLEDLANYVNGGGFIKLAASEEFLTRADAMPAF 174
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEE 217
F L +L+ S + IR ++ + + +++ S L + L +
Sbjct: 175 QEAYGFELSNDQLLAFSGGNTAQTIRAAAQSIDGVNLAMAYGTDGALSALRLVVLEDTKG 234
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
+ +VR + + P I LLK + + + I D V
Sbjct: 235 V--QPVYEPAPIVRKEIFEMYPEIGELLKPVFESLDLETLQSLNASIAIEGLDAGDVAEQ 292
Query: 276 MLR 278
L+
Sbjct: 293 YLK 295
>gi|148543421|ref|YP_001270791.1| substrate-binding region of ABC-type glycine betaine transport
system [Lactobacillus reuteri DSM 20016]
gi|184152830|ref|YP_001841171.1| glycine betaine/choline ABC transporter substrate bindingcomponent
[Lactobacillus reuteri JCM 1112]
gi|227363570|ref|ZP_03847687.1| substrate-binding like of glycine betaine ABC superfamily ATP
binding cassette transporter [Lactobacillus reuteri
MM2-3]
gi|227544763|ref|ZP_03974812.1| glycine betaine ABC superfamily ATP binding cassette transporter,
substrate-binding protein [Lactobacillus reuteri
CF48-3A]
gi|300908990|ref|ZP_07126453.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, binding protein [Lactobacillus reuteri
SD2112]
gi|325681764|ref|ZP_08161283.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, binding protein [Lactobacillus reuteri
MM4-1A]
gi|68160690|gb|AAY86791.1| lr0281 [Lactobacillus reuteri]
gi|148530455|gb|ABQ82454.1| Substrate-binding region of ABC-type glycine betaine transport
system [Lactobacillus reuteri DSM 20016]
gi|183224174|dbj|BAG24691.1| glycine betaine/choline ABC transporter substrate bindingcomponent
[Lactobacillus reuteri JCM 1112]
gi|227071366|gb|EEI09672.1| substrate-binding like of glycine betaine ABC superfamily ATP
binding cassette transporter [Lactobacillus reuteri
MM2-3]
gi|227185249|gb|EEI65320.1| glycine betaine ABC superfamily ATP binding cassette transporter,
substrate-binding protein [Lactobacillus reuteri
CF48-3A]
gi|300894397|gb|EFK87755.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, binding protein [Lactobacillus reuteri
SD2112]
gi|324978855|gb|EGC15803.1| proline/glycine betaine ABC superfamily ATP binding cassette
transporter, binding protein [Lactobacillus reuteri
MM4-1A]
Length = 299
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 30/303 (9%), Positives = 84/303 (27%), Gaps = 33/303 (10%)
Query: 2 YKILAVCLF-----LTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
KI+A+ L L A S P+ ++ + + ++ LE GYK
Sbjct: 4 KKIVALSLLSIAGLLAGTITPAVASAASNKPIIVGSKNVSESKTVSEIYALALEHE-GYK 62
Query: 57 TNIKLL-AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPY----------------LEEGS 99
K + V F + + +D++ Y +E ++ +++
Sbjct: 63 VTRKPNISNNVIFSATQKGEVDVYPDYTGTIVEAYLKKKGTGKSASQMAKLAHDGIQKDG 122
Query: 100 IKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI 159
+ + +A+ + + + + + +M
Sbjct: 123 LTTFKYAPGDNRQGVAMPTKDAKKYHITNLSELQKNAK-KINFASQGEFEKRADALPEMN 181
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
++ + + + + + L +
Sbjct: 182 KVYGKFD-----FKSIKDYDVNLLYKIMEQGKAQAAPVSTTDGQLATGKFTLLKD--NKN 234
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ ++ VV P + + L + K + ++ K + + Q+ + V +
Sbjct: 235 IWPPYNLVPVVNKKAAKSHPKMEQALNKVDAKLTTKQLTDLNKKVNVDGQNYKTVAKNWY 294
Query: 278 RTH 280
+
Sbjct: 295 NQN 297
>gi|55669783|pdb|1SW4|A Chain A, Crystal Structure Of Prox From Archeoglobus Fulgidus In
Complex With Trimethyl Ammonium
gi|55669784|pdb|1SW4|B Chain B, Crystal Structure Of Prox From Archeoglobus Fulgidus In
Complex With Trimethyl Ammonium
gi|55669785|pdb|1SW5|A Chain A, Crystal Structure Of Prox From Archeoglobus Fulgidus In
The Ligand Free Form
gi|55669786|pdb|1SW5|B Chain B, Crystal Structure Of Prox From Archeoglobus Fulgidus In
The Ligand Free Form
gi|55669787|pdb|1SW5|C Chain C, Crystal Structure Of Prox From Archeoglobus Fulgidus In
The Ligand Free Form
gi|55669788|pdb|1SW5|D Chain D, Crystal Structure Of Prox From Archeoglobus Fulgidus In
The Ligand Free Form
Length = 275
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 36/277 (12%), Positives = 86/277 (31%), Gaps = 27/277 (9%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL--AVPVTFRSLKNKGIDIF 79
+ S V + + M +++LEE GYK +K V + +LK I ++
Sbjct: 2 SQSSERVVIGSKPFNEQYILANMIAILLEEN-GYKAEVKEGLGGTLVNYEALKRNDIQLY 60
Query: 80 MGYWYPSLEKFIAPYLEEGSIK----------------LVAENLQGAKYMLAVNDVGFAL 123
+ Y + + E + +V G + A+
Sbjct: 61 VEYTGTAYNVILRKQPPELWDQQYIFDEVKKGLLEADGVVVAAKLGFRDDYALAVRADWA 120
Query: 124 GIKSYQDIAKYKKELGAKIYGIEP-GNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ I+ + ++G +P + + F K + +E +
Sbjct: 121 EENGVEKISDLAEFADQLVFGSDPEFASRPDGLPQIKKVYGFEFKEVKQMEP------TL 174
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ +N V ++ N+ L + +A + + +K ++
Sbjct: 175 MYEAIKNKQVDVIPAYTTDSRVDLFNLKILEDDKGALPPYDAIIIVNGNTAKDEKLISVL 234
Query: 243 RLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+LL++ + K+D + + + L+
Sbjct: 235 KLLEDR-IDTDTMRALNYQYDVEKKDAREIAMSFLKE 270
>gi|328465473|gb|EGF36702.1| hypothetical protein LM1816_05990 [Listeria monocytogenes 1816]
Length = 281
Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 28/266 (10%), Positives = 69/266 (25%), Gaps = 25/266 (9%)
Query: 33 TGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGIDIFMGYWY------ 84
T+ + + ++E G K I + V +++ N +DI +
Sbjct: 1 MATTESQIVSNILKELIEHDTGLKVEIVNNLGSTIVQHQAMLNGDVDITATRYTGTDLVG 60
Query: 85 ---------PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK 135
P E + G + ++ +
Sbjct: 61 PLGEEAIKDPEKALAAVKKGFEERFHQTWFDSYGFANTYVFMVRQDTAKKYNLNTVSDMR 120
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
K G++ + + + ++ ++ I +NN V
Sbjct: 121 KVENELTAGVDNSWMEREGDGYKAFSKAYDIEFKKIFP----MQIGLIYTALKNNQMDVA 176
Query: 196 LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVA 253
L + N+ L ++ + + L K P + + + K S
Sbjct: 177 LGYSTDGRIPTYNLKLLKDDKKFF--PPYDASALATDEILKKHPELKTTINKLKGKISTE 234
Query: 254 LENEMMKLILNNKQDRQFVGRTMLRT 279
++ ++ V + L+
Sbjct: 235 EMQKLNYEADGKLKEPSIVAQEFLQK 260
>gi|218672007|ref|ZP_03521676.1| probable glycine betaine/L-proline ABC transporter,
substrate-binding protein [Rhizobium etli GR56]
Length = 228
Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 33/223 (14%), Positives = 79/223 (35%), Gaps = 10/223 (4%)
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
+ + +L I + + + ++ ++ G +AV
Sbjct: 10 GIAYAALAKGDIQALTSQTDYVAQDYWDK--NKNRLEKISPVSHGLYQGVAVPKYVP--- 64
Query: 125 IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
I S + + + + G KI GIEPG + + + L +L+E S A + ++
Sbjct: 65 IDSLEQLNENADKFGGKIIGIEPGAGLMRDTSNAVKEYGLKL---QLVEGSTAAMTAALK 121
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
WEP + + YL + + ++ Y + + ++ P+ +
Sbjct: 122 SAYDRQEWIAVTIWEPSWMVQKYEVKYLKDPKGVFPPPQSY-YWIGHKGFSEEYPHAREV 180
Query: 245 LKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
+ ++ +A + + + + + + H DL+K W
Sbjct: 181 MASVYVPIADITAINGAV-KDGKTMDQAVQDWIGAHADLIKRW 222
>gi|11498587|ref|NP_069815.1| osmoprotection protein (proX) [Archaeoglobus fulgidus DSM 4304]
gi|2649614|gb|AAB90259.1| osmoprotection protein (proX) [Archaeoglobus fulgidus DSM 4304]
Length = 292
Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 35/277 (12%), Positives = 84/277 (30%), Gaps = 27/277 (9%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGIDIF 79
+ S V + + M +++LEE GYK +K V + +LK I ++
Sbjct: 19 SQSSERVVIGSKPFNEQYILANMIAILLEEN-GYKAEVKEGLGGTLVNYEALKRNDIQLY 77
Query: 80 MGYWYPSLEKFIAPYLEEGSIK----------------LVAENLQGAKYMLAVNDVGFAL 123
+ Y + + E + +V G + A+
Sbjct: 78 VEYTGTAYNVILRKQPPELWDQQYIFDEVKKGLLEADGVVVAAKLGFRDDYALAVRADWA 137
Query: 124 GIKSYQDIAKYKKELGAKIYG-IEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ I+ + ++G + + F K + +E +
Sbjct: 138 EENGVEKISDLAEFADQLVFGSDPEFASRPDGLPQIKKVYGFEFKEVKQMEP------TL 191
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ +N V ++ N+ L + +A + + +K ++
Sbjct: 192 MYEAIKNKQVDVIPAYTTDSRVDLFNLKILEDDKGALPPYDAIIIVNGNTAKDEKLISVL 251
Query: 243 RLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+LL++ + K+D + + + L+
Sbjct: 252 KLLEDR-IDTDTMRALNYQYDVEKKDAREIAMSFLKE 287
>gi|194289015|ref|YP_002004922.1| glycine betaine/carnitine/choline transporter membrane associated
component [Cupriavidus taiwanensis LMG 19424]
gi|193222850|emb|CAQ68853.1| putative glycine betaine/carnitine/choline transport system
membrane associated component [Cupriavidus taiwanensis
LMG 19424]
Length = 311
Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 38/303 (12%), Positives = 87/303 (28%), Gaps = 33/303 (10%)
Query: 4 ILAVCLFLTTFSISYARDA---DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+L + ++ A + P+R +T+ ++MT+ L G+ +
Sbjct: 13 LLVAAVTAFAAGLALATAPEARAAGAPIRVGGKNFTEQLLLSSMTTRYLRAK-GFDAELT 71
Query: 61 LL-AVPVTFRSLKNKGIDIFMGYWYPS---------------LEKFIAPYLEEGSIKLVA 104
+ ++++N +D+ Y + + + +
Sbjct: 72 AGLGSTLMRQAMENDQLDVVWDYTGTALIVFNKVEEKLDARDSYARVKQMDGARGLVWLD 131
Query: 105 ENLQGAKYMLAVNDVGFALGIKSY-----QDIAKYKKELGAKIYGIEPGNEGNQRILDMI 159
+ Y LA+ A + + + K + + +
Sbjct: 132 ASGINNTYALAMPKERAAASGATTLSAFAEQMRKAGPDASHPFAVDMEFAARPDGLEPLK 191
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
+ +I+ + +NN + L + ++ L +
Sbjct: 192 AQYQLPFSRRDVIQLDPG----LVYTALKNNQVELGLVYATDGRVKGFDLVLLED--DQH 245
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNIKF--SVALENEMMKLILNNKQDRQFVGRTML 277
F + VVR LD+ P ++ LL + EM + +Q V L
Sbjct: 246 FFPPYNAAPVVRKPVLDQHPELAGLLNALAAKLDNQSMTEMNYKVDIGQQPVDKVAEDFL 305
Query: 278 RTH 280
R H
Sbjct: 306 RGH 308
>gi|32487273|emb|CAD91240.1| hypothetical protein [Nonomuraea sp. ATCC 39727]
Length = 316
Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 31/276 (11%), Positives = 61/276 (22%), Gaps = 24/276 (8%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGIDIFMG 81
P+R +T+ + + L G + SL D+
Sbjct: 38 DGAPIRVTSKEFTEQLVLGKIAVLALTAA-GADVADQTNVQGSVNARASLTRGDADLMWE 96
Query: 82 YWYPSLEKFIAPYLE-----------------EGSIKLVAENLQGAKYMLAVNDVGFALG 124
Y ++ E I + Y + V
Sbjct: 97 YTGTGWITYLGQARPIPDHTRQYEAVRDLDLRENGIVWLPPAPLNNSYTIGVTRATAERY 156
Query: 125 IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
+ + L M+ + S +
Sbjct: 157 GLTKISDLTKIPVAQRTFCVDHETFGRDDGFLGMLRGYGLTYGEDVPRANVRRVSVGVLY 216
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
A+ + L++ L + F + +R D P I+R+
Sbjct: 217 DSVAGGQCALGMVTTTDGRIKALDLVLLED--DRHFFPLYNASVTLRRPVADAHPEIARI 274
Query: 245 LKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
I K + + + + + V R LR
Sbjct: 275 FAPISAKLTDDVMRALNAQVDVDGDVPVLVARDWLR 310
>gi|225872298|ref|YP_002753753.1| amine ABC transporter, quaternary amine uptake transporter (QAT)
family, periplasmic amine-binding protein
[Acidobacterium capsulatum ATCC 51196]
gi|225791952|gb|ACO32042.1| amine ABC transporter, quaternary amine uptake transporter (QAT)
family, periplasmic amine-binding protein
[Acidobacterium capsulatum ATCC 51196]
Length = 301
Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats.
Identities = 27/282 (9%), Positives = 71/282 (25%), Gaps = 28/282 (9%)
Query: 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGI 76
+ + +T+ + + +E K + + ++L I
Sbjct: 26 GCSPPRSSHIVIGAKDFTEQTLLGELLAQEIEAKTHLKVDRHFYLAGSYICQQALLAGRI 85
Query: 77 DIFMGYWYPSLEKFIAP----------------YLEEGSIKLVAENLQGAKYMLAVNDVG 120
D ++ Y +L + Y + + + + + V
Sbjct: 86 DAYVEYTGTALTAILKQPIDRNPQQVFDTVQRLYQQRYHVTVFPSLGFQNTFAMVVRPST 145
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ G E + + +
Sbjct: 146 ARRLRVTTLSQLVPDASHLRLGVGYE-FQTRPDGLRGLEKAYGM-----HFAGTPRVMDL 199
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ R ++ + + + ++ L + F +V L + P
Sbjct: 200 GLLYRALESHQVDIIAANSTDGPIAAAHLVILKD--DRHFFPPYQAVPLVSDAALRRWPQ 257
Query: 241 ISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
I +L ++ K + A +M + + +D V R + H
Sbjct: 258 IRPVLASLAGKITAAGMRQMNEEVDGEHRDPAAVIREFRKEH 299
>gi|1109686|gb|AAB01534.1| ProX [Bacillus subtilis]
Length = 313
Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats.
Identities = 31/294 (10%), Positives = 75/294 (25%), Gaps = 25/294 (8%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M + + + A S ++ ++ +M ++E KT
Sbjct: 9 MIGLTLAAMLPLSGCSLPGLSAASDQTIKIGAQSMSESEIIASMLGQLIEHHTDLKTTTI 68
Query: 61 LLAVPVTFRSLK--NKGIDIFMGYWY---------------PSLEKFIAPYLEEGSIKLV 103
+ N+ IDI + P + + L
Sbjct: 69 KNLGSNAVQQQALMNREIDIAATRYTGDALTGTLRMEPEKDPEKALALTQREFKKRYDLK 128
Query: 104 AENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK 163
+ G A ++++ KK G++ + Q
Sbjct: 129 WYDSYGFDNTYAFTVSKKLADQYHLENVSDVKKWAPQLKLGVDKVLDEAQGERLSRFYEN 188
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+ + + + ++ + L++ + L + F
Sbjct: 189 YGMTF----SGTYPMQIGLVYDAVKSGKMDIVLAYSTDGRIKSYGLKMLKD--DKQFFPP 242
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
VV L + P + ++ + K A E+ + N ++ V +
Sbjct: 243 YDCSPVVPEQVLKEHPELEGTIQKMIGKIDTATMQELNYEVDGNLKEPSVVAKA 296
>gi|149187381|ref|ZP_01865679.1| glycine betaine-binding protein [Vibrio shilonii AK1]
gi|148838917|gb|EDL55856.1| glycine betaine-binding protein [Vibrio shilonii AK1]
Length = 231
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 43/232 (18%), Positives = 82/232 (35%), Gaps = 4/232 (1%)
Query: 53 LGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKY 112
+G++ N F LK+ +DI W PS +E+ +
Sbjct: 1 MGFEVNRIYSPHQENFAKLKSGEVDILTSAWLPSSHGIYKQDVEQKRPVIELGLHYEPYA 60
Query: 113 MLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
V ++ +D+ K ++ I GI PG + + M+ S G+
Sbjct: 61 HWGVPSYVPEEAVREVKDLLKQDVLGKMQKDIQGINPGAGITRFSIKMMEEYGLSEVGYE 120
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
+E F+ + NN V W+P ++ +I + + + G + +V +V
Sbjct: 121 FHTGTEEDCFTTFEQRVANNEWFVVPLWKPQFLHFKYDIREIKDPKGLLGIVDRAVL-LV 179
Query: 231 RSDYLDKCPNI-SRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHP 281
D D+ L ++KFS + E+ + D V + L +
Sbjct: 180 PEDVADRFTAAQINQLDDLKFSNEIIAELDYKVSREGLDIDIVTKHWLEHNR 231
>gi|222110193|ref|YP_002552457.1| glycine betaine transporter periplasmic subunit [Acidovorax ebreus
TPSY]
gi|221729637|gb|ACM32457.1| Substrate-binding region of ABC-type glycine betaine transport
system [Acidovorax ebreus TPSY]
Length = 359
Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats.
Identities = 36/303 (11%), Positives = 83/303 (27%), Gaps = 36/303 (11%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRSLKNKGIDI 78
V + + T + LE LGY I+ + P ++ N
Sbjct: 51 ALPGKGVKVLPLKSSIAEETFQTLLVMKGLE-KLGYDVQPIQEVEYPTAHIAIGNGDATF 109
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQ--------- 129
+W P + + + A ++ +
Sbjct: 110 MADHWNPLHADYYKNAGGDAKLYRRGTYSGNAAQGYLIDKKTADAHGITNVEQLKDPKIA 169
Query: 130 DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRN 189
+ + A + G PG I ++ + + A + R
Sbjct: 170 QLFDTNGDGKADLTGCTPGWGCEAMIEHHLDAYGLR-NTVTHQQGTYSALIADTITRYRA 228
Query: 190 NIPAVFLSWEPHPINSD----LNIHYLPGGE-----------------EISGFGEASVYT 228
P ++ +W P+ ++++ ++ +L + GF
Sbjct: 229 GKPVLYYTWTPYWVSNELKPGKDVVWLEVPFSSLPGEQKGLDTRLPNGKNYGFVVNQQQI 288
Query: 229 VVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRT---MLRTHPDLLK 285
V + + P ++L + ++ VA N L+ + + R ++ H
Sbjct: 289 VANKAWAEANPAAAKLFEVMQLPVADINAQNHLMSRGQNKAADIERHVNGWIKAHQKTFD 348
Query: 286 NWL 288
W+
Sbjct: 349 GWV 351
>gi|257870709|ref|ZP_05650362.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
gallinarum EG2]
gi|257804873|gb|EEV33695.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
gallinarum EG2]
Length = 306
Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats.
Identities = 23/287 (8%), Positives = 65/287 (22%), Gaps = 25/287 (8%)
Query: 13 TFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRS 70
S + V ++ A+ + ++E T + + ++
Sbjct: 20 GCSFPGLASTSNEDTVAITGGITSEAQILGAIVAGMVEHYTDKNTTVINNLATTTINHQA 79
Query: 71 LKNKGIDIFMGYWY---------------PSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
+ N I + P+ E G
Sbjct: 80 MMNGDASISAARYTGTDLTTTLGLEPESDPTAAFNTVKKEFEKRYHQTWFPSYGFDNTYV 139
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
+ + ++ K + G++ + + ++
Sbjct: 140 FLVRKDTAEKYNLKKVSDLKGVADQLVAGVDTAWITREGDGYDGFQEAYGFSFKNILP-- 197
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYL 235
+ N + L + + ++ L VV +
Sbjct: 198 --MQIGLVYDAVDNGKMDIVLGYSTDGRIASYDLVMLEDDLNFF--PPYDAAPVVDDKLI 253
Query: 236 DKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
P ++ L + S ++ + N+ + V L+ +
Sbjct: 254 KDTPEVADALNKLADTISTEKMQQLNYQVDNDLLEPTVVAERFLQEN 300
>gi|121609858|ref|YP_997665.1| glycine betaine ABC transporter substrate-binding protein
[Verminephrobacter eiseniae EF01-2]
gi|121554498|gb|ABM58647.1| Substrate-binding region of ABC-type glycine betaine transport
system [Verminephrobacter eiseniae EF01-2]
Length = 301
Score = 113 bits (281), Expect = 4e-23, Method: Composition-based stats.
Identities = 39/298 (13%), Positives = 93/298 (31%), Gaps = 28/298 (9%)
Query: 3 KILAVCLFLTTFSI-SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIK 60
++L+ + + A AD + +T+ MT +L+ GY
Sbjct: 7 RLLSALIATALCLLPGAAAWADPAPSLTVGAKDFTEQLIMAEMTRQLLQSK-GYTVHKRD 65
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPS---------------LEKFIAPYLEEGSIKLVAE 105
+ + +L+N +D++ Y S + + + + + +A
Sbjct: 66 GMGTKIVRAALENGEVDLYWEYTGTSLVIFNKVTQRLSPQDVYQKVRELDGKKGLVWLAP 125
Query: 106 NLQGAKYMLAVNDVGFA-LGIKSYQDIAKYKKELGAKIYGI-EPGNEGNQRILDMINNNK 163
+ + Y + V G+K+ D+A K G+ + ++ +
Sbjct: 126 SKVNSTYAVVVRPDNPKTDGMKTISDLAAGYKSGNTIAMGMTAEFPKRLDGLIGLQKTYG 185
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
F + + N ++ LN+ L
Sbjct: 186 FEAGRANVRP----MQLNLAYNALANGDLDTVVAQATDGQIVALNLRMLADDAGFF--PN 239
Query: 224 ASVYTVVRSDYLDKCPNISRLLK--NIKFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++ V+R LD P + +L+ ++K A + + ++ + V ++ L
Sbjct: 240 YAMTPVIRQKVLDAHPGLKAVLESISMKLDDATMQRLNSEVDVRRKPIEAVAKSYLEE 297
>gi|150377218|ref|YP_001313813.1| substrate-binding region of ABC-type glycine betaine transport
system [Sinorhizobium medicae WSM419]
gi|150031765|gb|ABR63880.1| Substrate-binding region of ABC-type glycine betaine transport
system [Sinorhizobium medicae WSM419]
Length = 296
Score = 113 bits (281), Expect = 5e-23, Method: Composition-based stats.
Identities = 39/289 (13%), Positives = 88/289 (30%), Gaps = 27/289 (9%)
Query: 10 FLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL-AVPVTF 68
L+ +I++ + +T+ +T +LE G+ + K +
Sbjct: 11 LLSAAAIAFITTTAWAATLTVGGKNFTEQLIIAEITKQLLESK-GHTVDKKDGMGTKIVR 69
Query: 69 RSLKNKGIDIFMGYWYPSLEKF---------------IAPYLEEGSIKLVAENLQGAKYM 113
+L+N +D++ Y SL F + E + +A + Y
Sbjct: 70 AALENGEVDLYWEYTGTSLITFNKVMERLSPEETYSRVKELDGEKGLVWLAPSAANNTYA 129
Query: 114 LAVNDVGFA-LGIKSYQDIAKYKKELGAKIYG-IEPGNEGNQRILDMINNNKFSLKGFRL 171
+ G+++ D+AK + + G + ++ + F +
Sbjct: 130 YVIKPDNAKTEGMETISDLAKAYNDGKKILMGTTAEFPKRPDGLIGLEKVYGFETGRANV 189
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVR 231
N + + L + L + ++ VVR
Sbjct: 190 RPMD----LGLAYNALANGDLDTIAAQATDGQIAALGLKVLKDDKGFF--PNYALTPVVR 243
Query: 232 SDYLDKCPNISRLLKN--IKFSVALENEMMKLILNNKQDRQFVGRTMLR 278
+ LD P++ L+ +K A + + K+ + V L+
Sbjct: 244 KEVLDANPDLKETLEAVSMKLDDATMQRLNSEVDVEKKTIEAVAADYLK 292
>gi|283781062|ref|YP_003371817.1| Substrate-binding region of ABC-type glycine betaine transport
system [Pirellula staleyi DSM 6068]
gi|283439515|gb|ADB17957.1| Substrate-binding region of ABC-type glycine betaine transport
system [Pirellula staleyi DSM 6068]
Length = 516
Score = 113 bits (281), Expect = 5e-23, Method: Composition-based stats.
Identities = 30/300 (10%), Positives = 76/300 (25%), Gaps = 25/300 (8%)
Query: 1 MY-KILAVCLFLTTFSISYARDADSCT----PVRFADTGWTDIAATTAMTSVILEEILGY 55
M + + L + DA + + + M ++ E+ G
Sbjct: 1 MKMNLFLLVLAIIGLLSLTTVDAQENRLPLRRIIIGSKSYNEPIILGEMAVLLAEDA-GI 59
Query: 56 KTNI--KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIA-----------PYLEEGSIKL 102
+T +L + + +L++ ID + Y +++ L I++
Sbjct: 60 ETQHRAELGGTRILYEALRSGEIDFYFDYTGTLIKEIFDGVLIRNDDELRAALAAKGIRM 119
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
Y L + + Q I+ + + + +
Sbjct: 120 GKPLGFNNTYALGMKESRAEA--LGIQSISDLTSLALTNPQVAKLKLGVSDEFIQRADGW 177
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
+ + L + R + + + + L
Sbjct: 178 PGLQERYSLPFKVTGMDHNLAYRGLESGTIDLTDIYSTDAEVKYYKLRVLEDDLGFF--P 235
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ R + P ++ + K +EM + ++ D V L +
Sbjct: 236 VYYCVPLYRKELETTAPQFIEVVSRLEGKIDNQAMSEMNARVQIDQVDETRVAAEFLNAN 295
>gi|304398694|ref|ZP_07380566.1| Substrate-binding region of ABC-type glycine betaine transport
system [Pantoea sp. aB]
gi|304353905|gb|EFM18280.1| Substrate-binding region of ABC-type glycine betaine transport
system [Pantoea sp. aB]
Length = 332
Score = 113 bits (281), Expect = 5e-23, Method: Composition-based stats.
Identities = 41/320 (12%), Positives = 88/320 (27%), Gaps = 36/320 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKLL 62
+ AV L +S A V+ + + T + S LE LGY+ +
Sbjct: 8 LAAVVTTLAVSHVSAADLPGKGITVQPIQSTIAEETFQTLIVSRALE-KLGYQVSKPSEV 66
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
V + S+ W P + + + + GA ++
Sbjct: 67 DYNVGYTSIAAGDATFTAVNWQPLHDDMYKAAGGDQKLYRQGTYVTGAAQGYLIDKKTAE 126
Query: 123 LGIKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+ + + A + G PG I + S
Sbjct: 127 KYHITNIEQLKDPKIARLFDANGDGKADMTGCTPGWGCEAVINHQNSAFGLSDT-VTANM 185
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEE------------ 217
+ A + + P ++ +W P+ ++ ++ +L
Sbjct: 186 GNYSAMVADTLARYKQGKPILYYTWTPYWLSDVLKPGRDVVWLQVPFSSLPGEQKDVDTK 245
Query: 218 -----ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
GF +++ V + K P +RL +K + N + + + +
Sbjct: 246 LPNGANYGFPVNTMHIVANKAWAAKNPAAARLFAVMKLPITDINAENSAMHAGQNSEEAI 305
Query: 273 ---GRTMLRTHPDLLKNWLI 289
++ H W+
Sbjct: 306 NRHVDGWIKAHQAEFDKWIS 325
>gi|327398903|ref|YP_004339772.1| ABC-type glycine betaine transport, periplasmic subunit [Hippea
maritima DSM 10411]
gi|327181532|gb|AEA33713.1| ABC-type glycine betaine transport, periplasmic subunit [Hippea
maritima DSM 10411]
Length = 305
Score = 113 bits (281), Expect = 5e-23, Method: Composition-based stats.
Identities = 61/305 (20%), Positives = 98/305 (32%), Gaps = 31/305 (10%)
Query: 1 MY-KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILE-EILGYKTN 58
M KI+ + L + T A+ P+ + T+ A M L+ L K
Sbjct: 1 MKNKIIILLLVIFTIIPLRLMAAE--KPIIVSSKIDTEGALLGNMIYYALKYNGLNVKNK 58
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPS------------------LEKFIAPYLEEGSI 100
L A + R++K+ IDI+ Y E L++ SI
Sbjct: 59 TGLGATNILRRAIKSGEIDIYPEYTGNGAYFFPYLDKTIFKNFKKGYEAVKKEDLKKNSI 118
Query: 101 KLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGI-EPGNEGNQRILDM 158
+ + LA I S +D AKY G E +
Sbjct: 119 VWLTPANANNTWALATRKSFAQKNKIYSLEDFAKYVNNGGFVKLACSEEFATRKDALPAF 178
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAV--FLSWEPHPINSDLNIHYLPGGE 216
F LK +LI S + +Q + I V +++ S LN+ L
Sbjct: 179 EKAYGFKLKRSQLIILS-GGNTTQTEKALARKINNVNFAMAYGTDGSLSALNLIVLKDT- 236
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ ++R LDK P I+++LK I + + I FV +
Sbjct: 237 -KHIEPIYAPTPIIRKQTLDKHPEIAKILKPIFKSLTTETLQALNAKIAIEGIPAAFVAK 295
Query: 275 TMLRT 279
L+
Sbjct: 296 DYLKN 300
>gi|83643071|ref|YP_431506.1| periplasmic glycine betaine/choline-binding (lipo)protein of an
ABC-type transport system (osmoprotectant binding
protein) [Hahella chejuensis KCTC 2396]
gi|83631114|gb|ABC27081.1| Periplasmic glycine betaine/choline-binding (lipo)protein of an
ABC-type transport system (osmoprotectant binding
protein) [Hahella chejuensis KCTC 2396]
Length = 307
Score = 113 bits (281), Expect = 5e-23, Method: Composition-based stats.
Identities = 46/302 (15%), Positives = 95/302 (31%), Gaps = 28/302 (9%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--I 59
L +S A + + A T+ + M + LE+ GY+ I
Sbjct: 4 KSRLGRLAAALVLGLSIATHVAAKDKIVVASKIDTEGSVLGNMILLQLEKA-GYEVEDRI 62
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPS------------------LEKFIAPYLEEGSIK 101
+L A + +L N ID++ Y + L ++
Sbjct: 63 QLGATKIVRTALINGQIDVYPEYTGNAAFFFDMADSPVWKDPAKAYATAKEKDLAANNLV 122
Query: 102 LVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKEL-GAKIYGIEPGNEGNQRILDMI 159
+ + ++V + + D++++ K+ K+ E +
Sbjct: 123 WLHPADANNTWAISVRGDLAREQKLATLDDLSRFLKDGGEIKLAASAEFVESEFALPAFQ 182
Query: 160 NNNKFSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
F L +L+ S + + I R N +++ S L++ L +
Sbjct: 183 KAYGFQLSADQLLVLSGGNTAATIRAAALRTNGVNAAMAYGTDGGLSALDMVVLQDPRNV 242
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
V+R + L P+I ++ I K + + + N D + V R
Sbjct: 243 --QPVYEPAAVIRGEVLKANPDIGPMIDAIFEKLDLTTLQRLNADVAVNGLDPKEVAREF 300
Query: 277 LR 278
L+
Sbjct: 301 LQ 302
>gi|285017487|ref|YP_003375198.1| binding-protein-dependent transport systems inner membrane
component;substrate-binding region of ABC-type glycine
betaine transport system [Xanthomonas albilineans GPE
PC73]
gi|283472705|emb|CBA15210.1| hypothetical binding-protein-dependent transport systems inner
membrane component;substrate-binding region of abc-type
glycine betaine transport system [Xanthomonas
albilineans]
Length = 496
Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats.
Identities = 31/284 (10%), Positives = 73/284 (25%), Gaps = 28/284 (9%)
Query: 10 FLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVP 65
L ++ P V +T+ + + + G + +L
Sbjct: 10 ALLGVVVALLAVPAQARPERVVVGSKNFTEAVILGEIAAGAGRQA-GVEVEHRRQLGGTR 68
Query: 66 VTFRSLKNKGIDIFMGYWYP----------SLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
+ +R+L+ ID + Y + + + L + + + A Y L
Sbjct: 69 ILWRALQQGSIDAYAEYTGTLATELLQLPAADDATLRRALAQRGLAMSAPLGFDNTYALG 128
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
+ G + ++ K M + L
Sbjct: 129 MRRAGAQALGIT--RLSDLPAHPALKFGLSNEFISRADGWPGMRAAYRLPQIPTGLDHD- 185
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYL 235
R + + + ++ L + F + V R D
Sbjct: 186 ------LAYRALDSGAIDLTDLYSTDADIPAHDLRVLLD--DRHYFPRYAAVFVYRQDLA 237
Query: 236 DKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ P + L+++ + A + + +K+ V L
Sbjct: 238 QRAPRFVQALQSLGGRIDAATMQRLNAEVKLHKRAESAVAADWL 281
>gi|325916164|ref|ZP_08178448.1| periplasmic glycine betaine/choline-binding lipoprotein
[Xanthomonas vesicatoria ATCC 35937]
gi|325537584|gb|EGD09296.1| periplasmic glycine betaine/choline-binding lipoprotein
[Xanthomonas vesicatoria ATCC 35937]
Length = 490
Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats.
Identities = 33/288 (11%), Positives = 72/288 (25%), Gaps = 26/288 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVI-LEEILGYKTNI 59
M ++LA L L A PV +T+ + + + + +
Sbjct: 2 MARVLAAMLLLICSLGVQAA------PVTIGSKNFTEAVILGEIATAAGRRDGVDVQHRA 55
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA--------ENLQGAK 111
+L + +R+L+ ID + Y ++ + + A G +
Sbjct: 56 QLGGTRILWRALETGQIDAYAEYTGTLAQELLQLPKASHAELRAALDARGLAMTESLGFQ 115
Query: 112 YMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
A ++ + KI + + L
Sbjct: 116 DTYAFGMRRARAQALGIASLSDLARHPALKIGLSNEFMQRADGWPGVRAAYGLPQAATGL 175
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVR 231
R + V + + L + E + R
Sbjct: 176 DHD-------LAYRALESGAIEVTDLYSTDAEIPYYQLQVLRDDRQYF--PEYQAVFLYR 226
Query: 232 SDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
D + P + + L+ ++ A + + +Q V L
Sbjct: 227 KDLAQRAPAMLKTLQGLQGRIDEATMQRLNAQVKLQRQSEAAVAAQWL 274
>gi|297565355|ref|YP_003684327.1| glycine betaine ABC transporter substrate-binding protein
[Meiothermus silvanus DSM 9946]
gi|296849804|gb|ADH62819.1| Substrate-binding region of ABC-type glycine betaine transport
system [Meiothermus silvanus DSM 9946]
Length = 300
Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats.
Identities = 43/303 (14%), Positives = 87/303 (28%), Gaps = 32/303 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--N 58
M K+ A + L P+ T+ A MT ++LE G++
Sbjct: 1 MNKVFAFLVALGMGLAL-----AQKGPITIGSKIDTEGAVLCQMTKLVLEAN-GFRVNDR 54
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFI-----------------APYLEEGSIK 101
V ++L + ID++ Y ++ +F + I
Sbjct: 55 CSFGPTAVVRKALISGEIDLYPEYTGTAVTQFFPGEKIDARNAAQAYAKAKELDAKNGIV 114
Query: 102 LVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN 160
+A + +AV +K+ D A+Y + L
Sbjct: 115 WLAAAPANNTWAIAVPKALAEKEKLKTIADFARYVNAGKPVKLAASQEFVDREDALKAFE 174
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRNNI--PAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ + +Q + +++ + L + L +
Sbjct: 175 KVYGFKLKPEQLLILPGGNTTQTEQAAARGTSGVNAAMAYGTDGGIAALGLVALTDPQGA 234
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
VR DK P I+RL+ + + A + + + N ++ V R
Sbjct: 235 --VAVYQPALTVRKAVADKYPEIARLMNPVFAALNEATLSSLNAQVAVNGKNPADVARDY 292
Query: 277 LRT 279
L+
Sbjct: 293 LKN 295
>gi|327439397|dbj|BAK15762.1| ABC-type proline/glycine betaine transport systems, periplasmic
component [Solibacillus silvestris StLB046]
Length = 304
Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats.
Identities = 31/180 (17%), Positives = 66/180 (36%), Gaps = 3/180 (1%)
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
D + + +++ + EPG +++ + +L+G+ L E+S
Sbjct: 24 DDTENKESSAGASSSSIGEQVDYTVVATEPGAGLTGLSHEVMEQYE-NLEGWTLQESSTA 82
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDK 237
S + + RN P + W PH S ++ L + I G G ++ T+ R
Sbjct: 83 GMLSTLDKAIRNEEPVIVTGWTPHWKFSAYDLKILEDPKGILG-GAENIQTLARKGLEQD 141
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQ 297
P++ +L + ++M N D + + D + W + +G+
Sbjct: 142 LPDVYTVLDRFYWEPEDMEKVMYDAQENG-DFDVAAADWVENNQDKVSEWTKDIAQGNGE 200
Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/107 (20%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFM 80
+ V+ T W A++++ ++LE+ LGY+ + + + F+S+ D+ +
Sbjct: 195 AQGNGEKVKIISTPWDSEFASSSVIKLVLEQ-LGYEPEVTPVDPAIMFQSIATGEGDVTV 253
Query: 81 GYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKS 127
W P+ K ++ I + ENL+G + V I+
Sbjct: 254 APWLPTTHKAFYDKHKD-DIVDLGENLEGTQNGFVVPAYVEIDSIED 299
>gi|163849858|ref|YP_001637901.1| substrate-binding region of ABC-type glycine betaine transport
system [Methylobacterium extorquens PA1]
gi|163661463|gb|ABY28830.1| Substrate-binding region of ABC-type glycine betaine transport
system [Methylobacterium extorquens PA1]
Length = 334
Score = 112 bits (279), Expect = 8e-23, Method: Composition-based stats.
Identities = 37/284 (13%), Positives = 84/284 (29%), Gaps = 28/284 (9%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL--AVPVTFRSLKNKGID 77
A+ P+ + T+ A + S +LE+ LG + +L + +L ID
Sbjct: 50 ARAEPGRPIVISSKSDTEGALLGNLISFVLED-LGLRVERRLGLGPTLIVRSALLAGEID 108
Query: 78 IFMGYWYPSLEKFIAPYLEEGS-----------------IKLVAENLQGAKYMLAVNDVG 120
++ Y + + + +++AV
Sbjct: 109 LYPEYTGNVAFFSGTETDPAWKNSAGAYGLALRLDAAHGLVWLGQAPANNTWLIAVQGHL 168
Query: 121 F-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
G+ + D A ++ ++ E + + FSL R++ +
Sbjct: 169 ARERGLATMADFAGAVRDGVIRLAASTEFVESPAALPSFESAYGFSLPLSRIV-SLPGGD 227
Query: 180 FSQIRRDQRNNI--PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDK 237
+ R I + + + L++ + + V+R+ L++
Sbjct: 228 TAVTARAAAEGISGINAGMVYGTDGALAALDLAVMSDPKGAQI--VYEPAPVIRAATLER 285
Query: 238 CPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
P I L I + + I + + V + L
Sbjct: 286 HPRIREALDPIFARLDADTLRRLNAAITVEGRTAEAVAKAWLAE 329
>gi|159039180|ref|YP_001538433.1| substrate-binding region of ABC-type glycine betaine transport
system [Salinispora arenicola CNS-205]
gi|157918015|gb|ABV99442.1| Substrate-binding region of ABC-type glycine betaine transport
system [Salinispora arenicola CNS-205]
Length = 266
Score = 112 bits (279), Expect = 8e-23, Method: Composition-based stats.
Identities = 39/252 (15%), Positives = 73/252 (28%), Gaps = 5/252 (1%)
Query: 28 VRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSL 87
+ + + A A+T +LE+ G++ F +D+ + W PS
Sbjct: 10 LTVGNISLSFHRAVAAVTRRVLEDS-GHEVRTVEAPHQQLFEVQAAGELDVLVSAWLPSS 68
Query: 88 EKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDI--AKYKKELGAKIYGI 145
+ L + AV A + D+ + I GI
Sbjct: 69 HGKYLSPYRDHVQVL--PAHYEPYCVWAVPPYVPADAVGEVADLVRTDVAGRMTGTIDGI 126
Query: 146 EPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINS 205
PG ++ M+ G+ +E + S++ R V W P +N
Sbjct: 127 NPGAGISRFSAQMVREYGLDRHGYAFRPGTEQSFVSRVERGIAEREWFVIPLWRPQYLNL 186
Query: 206 DLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNN 265
+ L + + G +++ V P L + + KLI +
Sbjct: 187 LHGLRPLAEPKGLLGGVDSASPVVTNRAMDVIAPEALERLHKLHLGNEGVEAIDKLINVD 246
Query: 266 KQDRQFVGRTML 277
L
Sbjct: 247 GLAPLDAADRYL 258
>gi|269127835|ref|YP_003301205.1| Substrate-binding region of ABC-type glycine betaine transport
system [Thermomonospora curvata DSM 43183]
gi|268312793|gb|ACY99167.1| Substrate-binding region of ABC-type glycine betaine transport
system [Thermomonospora curvata DSM 43183]
Length = 303
Score = 112 bits (279), Expect = 9e-23, Method: Composition-based stats.
Identities = 38/276 (13%), Positives = 75/276 (27%), Gaps = 28/276 (10%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGIDIF 79
+ + + + + + LE G K K A V + + + I +F
Sbjct: 34 GGAAQTLVVGSADFPESELLGEIYAQALEAK-GVKVERKFKIGAREVYYGQVASGAIHVF 92
Query: 80 MGYWY--------------PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
Y ++++ + K L V
Sbjct: 93 PEYNGALLARVDKNDPAATTQEVDAALKAKLPAELEILTTSRAENKDSLVVTAATAREH- 151
Query: 126 KSYQDIAKYKKELGAKIYGIEPGN-EGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
+ IA K G I G P Q ++ + K F+ ++ + S +
Sbjct: 152 -GLKTIADLKDVAGEMIIGGPPEFKTRRQGLVGLEEVYGLKFKQFKSLDTGGPITVSNLA 210
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV-RSDYLDKCPNISR 243
V + P + L E + G +V ++ R +
Sbjct: 211 G----GQVQVANLFTTDPAITKNGFVVLEDPENVF--GAQNVVPLIYRPKVDQTARDALN 264
Query: 244 LLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+ K + A M + + K D + V L+
Sbjct: 265 AVSA-KLTTADLIAMNGQMSDQKLDPEDVAEQWLQK 299
>gi|34497084|ref|NP_901299.1| hypothetical protein CV_1629 [Chromobacterium violaceum ATCC 12472]
gi|34102941|gb|AAQ59305.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
12472]
Length = 283
Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats.
Identities = 45/253 (17%), Positives = 80/253 (31%), Gaps = 7/253 (2%)
Query: 28 VRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSL 87
+ + AA+ A+ + +LE+ G + F L D+ W P
Sbjct: 6 ITLITIDLSFHAASAAVVAQLLEKH-GVAVDELRAPHERAFALLAAGQGDMLCSAWLPGS 64
Query: 88 EKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGA--KIYGI 145
+E KL A L + V D A + D+ K + +I GI
Sbjct: 65 HGGYLAPIENDMEKLAA--LYEPYALWGVPDYVPAGAVAEIADLKKPEVASRMIKRIQGI 122
Query: 146 EPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINS 205
PG ++ ++I + + G+ S + V W+P ++
Sbjct: 123 NPGAGISRFSREIIAHYRLDGAGYHFENGSLEDCAQAFEQAVARGDWVVAPLWQPQFLHW 182
Query: 206 DLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS-RLLKNIKFSVALENEMMKLILN 264
I L E + G + R D L + P + L+ ++ + + LI
Sbjct: 183 RHRIRALADPENLLR-GRDEATLIARKDALARLPPAAVDDLRRLRLGNRVVAWLDHLICR 241
Query: 265 NKQDRQFVGRTML 277
R L
Sbjct: 242 QGATPAQAARQWL 254
>gi|88813585|ref|ZP_01128817.1| ABC transproter, fused inner membrane component and
substrate-binding domain [Nitrococcus mobilis Nb-231]
gi|88789147|gb|EAR20282.1| ABC transproter, fused inner membrane component and
substrate-binding domain [Nitrococcus mobilis Nb-231]
Length = 510
Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 29/293 (9%), Positives = 70/293 (23%), Gaps = 31/293 (10%)
Query: 4 ILAVCLFLTTFSISYARDAD--SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+LA+ L A + + + + LE G++ +L
Sbjct: 15 VLALTGLLLIVGSPAAAPPAHGEAGTITVGSKADREGHLLGEIFAQTLEAA-GFRVERQL 73
Query: 62 L--AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEE----------GSIKLVAENLQG 109
VT+++L ID++ Y + + ++++
Sbjct: 74 GLGQTIVTYQALVEGEIDVYPEYTGTLAHAILGVEHSDIDTLDRLVRRQGLRVLPPLGFN 133
Query: 110 AKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
Y L + + I I + + +
Sbjct: 134 NTYALTMRR--AKAQRLGIRRIGDLAAHPELIIGVSHEFRKRQDGWPGLRSRYALPQSPL 191
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV 229
L + R V ++ + L + +
Sbjct: 192 GLEHGI-------AYQAIREGSIDVTDAYSTDGDIERFDFMLLQDDQGYF--PRYLAVPL 242
Query: 230 VRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
V +D P ++ L+ + + + + ++ V L H
Sbjct: 243 VAADLPS--PAVAA-LRRLAGLLDERQMRALNAEVSSTERSFSAVAAEFLAEH 292
>gi|323492473|ref|ZP_08097621.1| glycine betaine ABC transporter substrate-binding protein [Vibrio
brasiliensis LMG 20546]
gi|323313260|gb|EGA66376.1| glycine betaine ABC transporter substrate-binding protein [Vibrio
brasiliensis LMG 20546]
Length = 310
Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 41/303 (13%), Positives = 82/303 (27%), Gaps = 25/303 (8%)
Query: 8 CLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVT 67
L L + ++++ DA+ PVR W T +LE+ G + I + V
Sbjct: 5 SLLLGSLVVAFSVDAE---PVRLLSLDWGSQQVITKALGRLLEQQ-GIEVEIVYASSQVQ 60
Query: 68 FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF--ALGI 125
+ L D+ + W S+ + +G I+ + + D G+
Sbjct: 61 WYKLAQGEADVQVEVWQGSMGPKYDEMIAKGFIQQGTVHNVETREEWWYPDYVEALCPGL 120
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
+++ + K G D L + A ++R
Sbjct: 121 PNWEALKNCAHLFSYKDSERGVYYSGPWEKPDAAKIRALGLNYRVEVLEDGDAINRKLRD 180
Query: 186 DQRNNIPAVFLSWEPHPI----------NSDLNIHYLPGGE---------EISGFGEASV 226
P + +W P+ + + + A +
Sbjct: 181 YIAKQKPLLIYNWTPNWVEAKYPGSFVEFPRYDEACELDPSWGVNSKYTWDCGNPRGAWL 240
Query: 227 YTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKN 286
T + + K ++ + S LI N Q L +
Sbjct: 241 KTAISNQLRTKSACAFDIVSSFTLSSQHIATASLLIDNENQTLDQAADNWLNQFQHQHSD 300
Query: 287 WLI 289
W+
Sbjct: 301 WIE 303
>gi|26989494|ref|NP_744919.1| glycine betaine/L-proline ABC transporter, periplasmic binding
protein, putative [Pseudomonas putida KT2440]
gi|24984364|gb|AAN68383.1|AE016470_12 glycine betaine/L-proline ABC transporter, periplasmic binding
protein, putative [Pseudomonas putida KT2440]
Length = 374
Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 45/324 (13%), Positives = 96/324 (29%), Gaps = 50/324 (15%)
Query: 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKG--I 76
A + + + + WT A + I+ L + + +P+ F + +
Sbjct: 47 ATASFAKDKIVIGEQNWTGAIAIQYILGDIISNRLDGEVSYLAGDLPILFAAAAKGDGSV 106
Query: 77 DIFMGYWYPSLEKFIAPYLEEGSIKLVA--ENLQGAKYMLAVNDVGFALGIKSYQDIAKY 134
D+ W P+ A Y+ G+ L+ + G + + +KS D+ K
Sbjct: 107 DVLTDIWLPNQSAAFAKYVTGGTHSLIPNKQPYVGVQGFYIPGYIQDKYNVKSVYDLKKP 166
Query: 135 KKELGAKIYG--------IEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRD 186
+ G G E + F F + +++++
Sbjct: 167 EVAKLFAPLGGGKSQLLVGPAGWESTYIGQIKAKDFGFD-GNFESVSTEASVTYAKLDAA 225
Query: 187 QRNNIPAVFLSWEPHPINSDLNIHYLPGGE------------------------------ 216
+ +F ++ P I S ++ L
Sbjct: 226 YKAERGVIFYAYTPDWIFSAYDLRRLDEPPFDGYAQDNKKGDPLYKADGCWKFISPTVDA 285
Query: 217 -------EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDR 269
+ +A V+ + S + P I+ L+N+ A N+++ I KQ
Sbjct: 286 DWLNKSSITCAYPDAKVHILASSALRQRAPRIAAFLENVSIDPASLNDLILKIEREKQPA 345
Query: 270 QFVGRTMLRTHPDLLKNWLIGVTT 293
+ + + + WL T
Sbjct: 346 DAAAKAWVAANQATVDRWLSATGT 369
>gi|22536426|ref|NP_687277.1| amino acid ABC transporter amino acid-binding protein
[Streptococcus agalactiae 2603V/R]
gi|76788338|ref|YP_328969.1| quaternary amine ABC transporter amino acid-binding protein
[Streptococcus agalactiae A909]
gi|76798131|ref|ZP_00780384.1| amino acid ABC transporter, amino acid-binding protein
[Streptococcus agalactiae 18RS21]
gi|77405364|ref|ZP_00782459.1| amino acid ABC transporter, amino acid-binding protein
[Streptococcus agalactiae H36B]
gi|77411473|ref|ZP_00787818.1| amino acid ABC transporter, amino acid-binding protein
[Streptococcus agalactiae CJB111]
gi|22533254|gb|AAM99149.1|AE014202_17 amino acid ABC transporter, amino acid-binding protein
[Streptococcus agalactiae 2603V/R]
gi|76563395|gb|ABA45979.1| quaternary amine uptake (QAT) family ABC transporter, amino
acid-binding protein [Streptococcus agalactiae A909]
gi|76586490|gb|EAO62995.1| amino acid ABC transporter, amino acid-binding protein
[Streptococcus agalactiae 18RS21]
gi|77162476|gb|EAO73442.1| amino acid ABC transporter, amino acid-binding protein
[Streptococcus agalactiae CJB111]
gi|77176042|gb|EAO78816.1| amino acid ABC transporter, amino acid-binding protein
[Streptococcus agalactiae H36B]
Length = 308
Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 37/298 (12%), Positives = 82/298 (27%), Gaps = 29/298 (9%)
Query: 6 AVCLFLTTFSISYARDADSCT----PVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
L L +IS + D+ ++ A T+ + + + ++ LGY T +
Sbjct: 10 IFTLCLALLTISGCQLTDTKKSGHTTIKVAAQSSTESSIMANIITELIHHELGYNTTLIS 69
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWY---------------PSLEKFIAPYLEEGSIKLVA 104
+ VT ++L DI + P I +
Sbjct: 70 NLGSSTVTHQALLRGDADIAATRYTGTDITGTLGLKAVKDPKEASKIVKTEFQKRYNQTW 129
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKF 164
G A I+ KK G++ + +
Sbjct: 130 YPTYGFSDTYAFMVTKEFARQNKITKISDLKKLSTTMKAGVDSSWMNREGDGYTDFAKTY 189
Query: 165 SLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEA 224
+ + + +N L + S ++ L ++
Sbjct: 190 GFEFSHIYP----MQIGLVYDAVESNKMQSVLGYSTDGRISSYDLEILRDDKKFF--PPY 243
Query: 225 SVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
VV + + K P + +LL + K ++ + ++ + + V + L +
Sbjct: 244 EASMVVNNSIIKKDPKLKKLLHRLDGKINLKTMQNLNYMVDDKLLEPSVVAKQFLEKN 301
>gi|256376181|ref|YP_003099841.1| glycine/betaine ABC transporter substrate-binding protein
[Actinosynnema mirum DSM 43827]
gi|255920484|gb|ACU35995.1| Substrate-binding region of ABC-type glycine betaine transport
system [Actinosynnema mirum DSM 43827]
Length = 336
Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 31/280 (11%), Positives = 73/280 (26%), Gaps = 31/280 (11%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPVTFRSLKNKGIDIF 79
A V +T+ +T V L G + N + + ++L D+
Sbjct: 45 ALEGVKVSVGSKDFTENIVLGYITEVAL-AAAGAEVNDMTNIQGSNSSRQALLTGDADLS 103
Query: 80 MGYWYPSLEKFIAPYLE-----------------EGSIKLVAENLQGAKYMLAVNDVGFA 122
Y ++ + + Y AV
Sbjct: 104 WDYSGTGWISYLGNTEPIQGEREQYEAVREADLERNGLVWLDYTKVNNTYAFAVTREFAE 163
Query: 123 LG-IKSYQDIAKYKKELGAKIYGIEP--GNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+ + +A+ K K N + F ++
Sbjct: 164 ANNLSTTSQMAELVKNDPGKGVFCLETEFISRNDGFPGVAQTYGFDAGAAQVKTFGSG-- 221
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
I + + + L++ L ++ + + V+R ++ ++ P
Sbjct: 222 --TIYTATSDGLCNFGEVFTTDGRILALDLVVLEDDKKFF--PQYNASLVLREEFHEQHP 277
Query: 240 NISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
I R++ + K + + + +D V R +
Sbjct: 278 EIERIMTPVFEKLDNDTIIRLNAEVDVDGRDPAAVARDWM 317
>gi|77408833|ref|ZP_00785561.1| amino acid ABC transporter, amino acid-binding protein
[Streptococcus agalactiae COH1]
gi|77413740|ref|ZP_00789922.1| amino acid ABC transporter, amino acid-binding protein
[Streptococcus agalactiae 515]
gi|77160231|gb|EAO71360.1| amino acid ABC transporter, amino acid-binding protein
[Streptococcus agalactiae 515]
gi|77172564|gb|EAO75705.1| amino acid ABC transporter, amino acid-binding protein
[Streptococcus agalactiae COH1]
gi|319744187|gb|EFV96555.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, binding protein [Streptococcus
agalactiae ATCC 13813]
Length = 308
Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 37/298 (12%), Positives = 82/298 (27%), Gaps = 29/298 (9%)
Query: 6 AVCLFLTTFSISYARDADSCT----PVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
L L +IS + D+ ++ A T+ + + + ++ LGY T +
Sbjct: 10 IFTLCLALLTISGCQLTDTKKPGHTTIKVAAQSSTESSIMANIVTELIHHELGYNTTLIS 69
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWY---------------PSLEKFIAPYLEEGSIKLVA 104
+ VT ++L DI + P I +
Sbjct: 70 NLGSSTVTHQALLRGDADIAATRYTGTDITGTLGLKAVKDPKEASKIVKTEFQKRYNQTW 129
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKF 164
G A I+ KK G++ + +
Sbjct: 130 YPTYGFSDTYAFMVTKEFARQNKITKISDLKKLSTTMKAGVDSSWMNREGDGYTDFAKTY 189
Query: 165 SLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEA 224
+ + + +N L + S ++ L ++
Sbjct: 190 GFEFSHIYP----MQIGLVYDAVESNKMQSVLGYSTDGRISSYDLEILRDDKKFF--PPY 243
Query: 225 SVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
VV + + K P + +LL + K ++ + ++ + + V + L +
Sbjct: 244 EASMVVNNSIIKKDPKLKKLLHRLDGKINLKTMQNLNYMVDDKLLEPSVVAKQFLEKN 301
>gi|166710140|ref|ZP_02241347.1| ABC transporter amino acid permease [Xanthomonas oryzae pv.
oryzicola BLS256]
Length = 489
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 32/289 (11%), Positives = 74/289 (25%), Gaps = 28/289 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI- 59
M + L + L ++A V +T+ + + + G
Sbjct: 1 MARALIAAMLLICSLAAHAAQ------VTIGSKNFTEAVILGDIATAAGKRD-GVDVQHR 53
Query: 60 -KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA--------ENLQGA 110
+L + +R+L+ ID + Y ++ + + A + G
Sbjct: 54 AQLGGTRILWRALQTGQIDAYAEYTGTLAQELLQLPTASQAELRAALDARGLAMTDSLGF 113
Query: 111 KYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
+ A ++ + KI + +
Sbjct: 114 QNTYAFGMRRERAQALGIVSLSDLARHPALKIGLSNEFMQRADGWPGVRAAYALPQTATG 173
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
L R +N V + + L + F + +
Sbjct: 174 LDHD-------LAYRALQNGAIEVTDLYSTDAEIPYYQLQVLRD--DRHYFPDYQAIFLY 224
Query: 231 RSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
R D ++ P + + L+ ++ A + + +Q V L
Sbjct: 225 RKDLAERSPAMLQALQGLQGRIDEATMQRLNAQVKLERQSEAAVAAHWL 273
>gi|188574536|ref|YP_001911465.1| ABC transporter amino acid permease [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|188518988|gb|ACD56933.1| ABC transporter amino acid permease [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 489
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 32/289 (11%), Positives = 74/289 (25%), Gaps = 28/289 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI- 59
M + L + L ++A V +T+ + + + G
Sbjct: 1 MARALIAAMLLICSLAAHAAQ------VTIGSKNFTEAVILGDIATAAGKRD-GVDVQHR 53
Query: 60 -KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA--------ENLQGA 110
+L + +R+L+ ID + Y ++ + + A + G
Sbjct: 54 AQLGGTRILWRALQTGQIDAYAEYTGTLAQELLQLPTASQAELRAALDARGLAMTDSLGF 113
Query: 111 KYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
+ A ++ + + KI + +
Sbjct: 114 QNTYAFGMRRERAQALGIVSLSDFARHPTLKIGLSNEFMQRADGWPGVRAAYALPQTATG 173
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
L R +N V + + L + F + +
Sbjct: 174 LDHD-------LAYRALQNGAIEVTDLYSTDAEIPYYQLQVLRD--DRHYFPDYQAIFLY 224
Query: 231 RSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
R D + P + + L+ ++ A + + +Q V L
Sbjct: 225 RKDLAQRSPAMLQALQGLQGRIDEATMQRLNAQVKLERQSEAAVAAHWL 273
>gi|195943157|ref|ZP_03088539.1| glycine betaine, L-proline ABC transporter,
glycine/betaine/L-proline-binding protein (proX)
[Borrelia burgdorferi 80a]
Length = 210
Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 41/213 (19%), Positives = 78/213 (36%), Gaps = 6/213 (2%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
MYK+ + S + + + V+ W A T + V+ E +GY I
Sbjct: 1 MYKLFLFFIIFMFLSCDEKKSSKNLKSVKIGYVNWGGETAATNVLKVVFE-KMGYNAEIF 59
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ + ++ L + ID + W P+ +KF L + + N +G V
Sbjct: 60 SVTTSIMYQYLASGKIDGTVSSWVPTADKFYYEKL-KTKFVDLGANYEGTIQGFVVPSYV 118
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
I S ++ + K+ GI+ G +N S + L+ +SE
Sbjct: 119 P---ISSISELKGKGDKFKNKMIGIDAGAGTQIVTEQALNYYGLSK-EYELVPSSESVML 174
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLP 213
+ + + N + W+PH S + + +L
Sbjct: 175 ASLDSSIKRNEWILVPLWKPHWAFSSMILSFLM 207
>gi|218528489|ref|YP_002419305.1| substrate-binding region of ABC-type glycine betaine transporter
[Methylobacterium chloromethanicum CM4]
gi|218520792|gb|ACK81377.1| Substrate-binding region of ABC-type glycine betaine transport
system [Methylobacterium chloromethanicum CM4]
Length = 303
Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 37/284 (13%), Positives = 82/284 (28%), Gaps = 28/284 (9%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--LLAVPVTFRSLKNKGID 77
A+ P+ T+ A + +++LE+ LG + L + +L ID
Sbjct: 19 ARAEPARPIVIGSKSDTEGALLGNLIALVLED-LGLPVERRLGLGPTLIVRSALLAGEID 77
Query: 78 IFMGYWYPSLEKFIAPYLEEGS-----------------IKLVAENLQGAKYMLAVNDVG 120
++ Y + + +++AV
Sbjct: 78 LYPEYTGNVAFFSGTETDPAWKNSAGAYGLALRLDAAHGLVWLGRAPANNTWLIAVQGRL 137
Query: 121 F-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
G+ + D A ++ ++ E + + FSL R++ +
Sbjct: 138 ARERGLATMADFAGAVRDGAIRLAASTEFVESPAALPSFESAYGFSLPLSRIV-SLPGGD 196
Query: 180 FSQIRRDQRNNI--PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDK 237
+ R I + + + L++ + + V+RS L++
Sbjct: 197 TAVTARAAAEGISGINAGMVYGTDGALAALDLTVMSDPKGAQI--VYEPAPVIRSATLER 254
Query: 238 CPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
P I L I + + I + + V + L
Sbjct: 255 HPRIREALDPIFARLDADTLRRLNAAITVEGRTAEAVAKAWLAE 298
>gi|146308135|ref|YP_001188600.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas mendocina ymp]
gi|145576336|gb|ABP85868.1| Substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas mendocina ymp]
Length = 304
Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 43/303 (14%), Positives = 89/303 (29%), Gaps = 28/303 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-- 58
M + + L + + A + PV + T+ A + ++ LE G
Sbjct: 1 MSRSGLRLIPLLAALVFGSASAAAADPVVVSSKIDTEGAVLGNLIALRLERG-GVPVEQR 59
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYP------------------SLEKFIAPYLEEGSI 100
++L A + ++L ID++ Y + E +
Sbjct: 60 LQLGATNIVRKALIAGEIDLYPEYTGNGAFFFDQADSPVWKDAAKAYATVKRLDREAHDL 119
Query: 101 KLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL--GAKIYGIEPGNEGNQRILDM 158
+ + ++V D K E +
Sbjct: 120 VWLQPADANNTWAMSVRGDLARAHGLRSLDDLARYLAAGGDFKFAASAEFVESPSALPAF 179
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQR-NNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
F L+ +L+ S + + +R + N +S+ + L++ L
Sbjct: 180 QKAYGFRLEPAQLVVLSGGNTAATLRAAAQGTNGVNAAMSYGTDGGLAALDLQVLSDPRA 239
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
+ +VR++ L P I LL+ + S+ + + N D + V T
Sbjct: 240 V--QPVYQPAPLVRAEVLTAYPQIETLLRPLFTALSLETLQRLNGEVAVNGADPRQVAET 297
Query: 276 MLR 278
L
Sbjct: 298 FLD 300
>gi|34496650|ref|NP_900865.1| ABC transporter periplasmic-binding protein [Chromobacterium
violaceum ATCC 12472]
gi|34102505|gb|AAQ58870.1| probable ABC transporter periplasmic binding protein
[Chromobacterium violaceum ATCC 12472]
Length = 315
Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 32/277 (11%), Positives = 75/277 (27%), Gaps = 31/277 (11%)
Query: 28 VRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-LAVPVTFRSLKNKGIDIFMGYWYPS 86
+ +T+ + +T+ L GY+ K LA + ++++ ID+ Y
Sbjct: 39 LTLGSKNFTEQHLLSELTAQYLRGK-GYQVAQKPDLATVILRNAMEHGQIDLAWDYTGTG 97
Query: 87 ---------------LEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL-GIKSYQD 130
+ E + + Y LA+ G+++ D
Sbjct: 98 LIIHHGIQQKMSNEEAYATVKRLDEPKGLIWLNPAALNNTYALAMKRERAEAEGVRTLSD 157
Query: 131 IAKYKKELG-----AKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
+A+ ++ + + L ++ + +
Sbjct: 158 LARAVNRSNGGDKRWQLGFDMEFAGRPDGLKPLQQLYGMELSRPQIRQMDSG----LVYN 213
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
R+ L + + L + V LD+ P ++ L
Sbjct: 214 AVRDGFVDAGLVYTTDGRIKGFELLVLQDDLNFF--PAYAATPVASKAALDRNPGLADDL 271
Query: 246 KNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ + M + + + V LR+H
Sbjct: 272 NRLASLLDNDTMSAMNAEVDIRHRPVKEVAAEFLRSH 308
>gi|323528697|ref|YP_004230849.1| glycine betaine ABC transporter substrate-binding protein
[Burkholderia sp. CCGE1001]
gi|323385699|gb|ADX57789.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia sp. CCGE1001]
Length = 341
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 43/332 (12%), Positives = 100/332 (30%), Gaps = 47/332 (14%)
Query: 3 KILAVCLFLTTFSISYARD---ADSCTPVRFADTGWTDI-AATTAMTSVILEEILGYKTN 58
K+L + + + V +A + +TS L+ LGY
Sbjct: 6 KVLGAVTASFFLAGTAGAQTTLPGAGKTVHYAQDDSLGGNYVVSQITSQALK-KLGYDVR 64
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ + + F+++ +D+ P E ++ ++ + G V+
Sbjct: 65 LSTMDTTLFFQAVSQGDMDLATDVTLPQREPGFRAIAQQATLVGDGMIIGGGINGYLVDR 124
Query: 119 VGFALGIKSYQDIAKYKK-------ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
+ K K + A++ +P + ++ + +
Sbjct: 125 KTAVANNITNLQQMKDPKIAGLFGSDGKAEMISCDPAWSCGVVVDYQLDKFGL-KQTVKP 183
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEEI--------- 218
I A + + RN PA + +W P + + ++ +LP ++
Sbjct: 184 IRGKYEALMADVVAKVRNGKPAFYYAWSPSWMTNALKPGSDVVWLPTPQDALPPDVPARG 243
Query: 219 ------------------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMK 260
G + TV +L P + LL+ I+F ++ +E
Sbjct: 244 SALVKGVVGCAGGADPCRMAMGAWNYDTVANKQFLAGNPAVKALLEQIRFPLSTWSEWEG 303
Query: 261 LILNNKQDRQFVGR---TMLRTHPDLLKNWLI 289
I V + + + ++ W+
Sbjct: 304 AISKEGGSVSVVKKLSDSWIASNQSQFDQWVA 335
>gi|289705261|ref|ZP_06501660.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Micrococcus luteus SK58]
gi|289558011|gb|EFD51303.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Micrococcus luteus SK58]
Length = 335
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 28/281 (9%), Positives = 67/281 (23%), Gaps = 26/281 (9%)
Query: 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPVTFRSLKNKGI 76
A V + + +T+++L G + ++ +
Sbjct: 55 AGIDLEGAHVAVGSKNFNEGVVLGKITAILLRSA-GADVEDLTNMPGSLSARQAQVAGVV 113
Query: 77 DIFMGYWYPSLEKFI----------------APYLEEGSIKLVAENLQGAKYMLAVNDVG 120
D+ Y + ++ + + + Y +V
Sbjct: 114 DVEWDYTGTAWITYLGHTDPIPDAQAQWAAVRDEDAQQGLVWLPPAELDNTYTFSVRQDR 173
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
K N L M+
Sbjct: 174 AEELGLETLADIKDLPTEDQSFCVSAEFAARNDGFLPMLEAYGIERPTG---SRLRQMDI 230
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ + ++ + L++ L +S F + + +VR + L + P
Sbjct: 231 GAVFAAVADGSCTFGEAYSTDGRIAALDLTTLQDP--LSFFPKYNAAPIVREEVLAQHPE 288
Query: 241 ISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
I+ LL + A + + + ++ V LR
Sbjct: 289 IADLLAPVTARLDNATAARLNARVDVDGEEPTQVAWDWLRE 329
>gi|303325167|pdb|3O66|A Chain A, Crystal Structure Of Glycine BetaineCARNITINECHOLINE ABC
TRANSPORTER
gi|303325168|pdb|3O66|B Chain B, Crystal Structure Of Glycine BetaineCARNITINECHOLINE ABC
TRANSPORTER
Length = 282
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 25/284 (8%), Positives = 67/284 (23%), Gaps = 27/284 (9%)
Query: 18 YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL----LAVPVTFRSLKN 73
+ V+ ++ + +++E K L + + +L N
Sbjct: 1 SNASKSTKNDVKITALSTSESQIISHXLRLLIEHDTHGKIKPTLVNNLGSSTIQHNALIN 60
Query: 74 KGIDIF-MGYWYPSLEKFIAPYL--------------EEGSIKLVAENLQGAKYMLAVND 118
+I + Y L + + + G A
Sbjct: 61 GDANISGVRYNGTDLTGALKEAPIKDPKKAXIATQQGFKKKFDQTFFDSYGFANTYAFXV 120
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ ++ K G + + ++ +
Sbjct: 121 TKETAKKYHLETVSDLAKHSKDLRLGXDSSWXNRKGDGYEGFKKEYGFDFGTVRP----X 176
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+ V L + + ++ L + F + V ++ L +
Sbjct: 177 QIGLVYDALNTEKLDVALGYSTDGRIAAYDLKVLKD--DKQFFPPYAASAVATNELLRQH 234
Query: 239 PNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
P + + + K S + + ++ V L+ H
Sbjct: 235 PELKTTINKLTGKISTSEXQRLNYEADGKGKEPAVVAEEFLKKH 278
>gi|315648221|ref|ZP_07901322.1| Substrate-binding region of ABC-type glycine betaine transport
system [Paenibacillus vortex V453]
gi|315276867|gb|EFU40210.1| Substrate-binding region of ABC-type glycine betaine transport
system [Paenibacillus vortex V453]
Length = 296
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 41/282 (14%), Positives = 85/282 (30%), Gaps = 40/282 (14%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--LLAVPVTFRSLK 72
+S + AD + +T+ M + ++E+ G L VT+++L+
Sbjct: 35 GVSSSGPAD----LVIGSKNFTENIILAHMMADLIEDRTGLSVKRTLNLGGSSVTWKALQ 90
Query: 73 NKGIDIFMGYWYPSLEKFI--------------APYLEEGSIKLVAENLQGAKYMLAVND 118
N I ++ Y + + + + ++ + Y LAV
Sbjct: 91 NNDIQLYPDYTGTIVANYYLEETGSAEETLKRTRELVAQDGLEFLEPIGFNNSYALAVTQ 150
Query: 119 VGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
A +++Y D+AK + + D + + + +
Sbjct: 151 DTAAKYGLRTYSDLAKVSENMEL---------GAEFEFTDRPDTYPGLKELYHMNFKRVK 201
Query: 178 ASFSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
I R N V ++ N+ L + +VRSD L
Sbjct: 202 GMDQGIKYRLIAQNDLDVASAYTTDGQVKVNNLFVLEDDKGFF--PPYDAGAIVRSDLLK 259
Query: 237 KCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
K P + L + + + E+ L+ + R
Sbjct: 260 KYPEVREALNALGGQINEENMQELNALVGC-----KDTARIW 296
>gi|58584134|ref|YP_203150.1| ABC transporter amino acid permease [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|58428728|gb|AAW77765.1| ABC transporter amino acid permease [Xanthomonas oryzae pv. oryzae
KACC10331]
Length = 490
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 32/289 (11%), Positives = 73/289 (25%), Gaps = 28/289 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI- 59
M + L + L ++A V +T+ + + + G
Sbjct: 2 MARALIAAMLLICSLAAHAAQ------VTIGSKNFTEAVILGDIATAAGKRD-GVDVQHR 54
Query: 60 -KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA--------ENLQGA 110
+L + +R+L+ ID + Y ++ + + A + G
Sbjct: 55 AQLGGTRILWRALQTGQIDAYAEYTGTLAQELLQLPTASQAELRAALDARGLAMTDSLGF 114
Query: 111 KYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
+ A ++ + KI + +
Sbjct: 115 QNTYAFGMRRERAQALGIVSLSDLARHPTLKIGLSNEFMQRADGWPGVRAAYALPQTATG 174
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
L R +N V + + L + F + +
Sbjct: 175 LDHD-------LAYRALQNGAIEVTDLYSTDAEIPYYQLQVLRD--DRHYFPDYQAIFLY 225
Query: 231 RSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
R D + P + + L+ ++ A + + +Q V L
Sbjct: 226 RKDLAQRSPAMLQALQGLQGRIDEATMQRLNAQVKLERQSEAAVAAHWL 274
>gi|84625907|ref|YP_453279.1| ABC transporter amino acid permease [Xanthomonas oryzae pv. oryzae
MAFF 311018]
gi|84369847|dbj|BAE71005.1| ABC transporter amino acid permease [Xanthomonas oryzae pv. oryzae
MAFF 311018]
Length = 489
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 32/289 (11%), Positives = 73/289 (25%), Gaps = 28/289 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI- 59
M + L + L ++A V +T+ + + + G
Sbjct: 1 MARALIAAMLLICSLAAHAAQ------VTIGSKNFTEAVILGDIATAAGKRD-GVDVQHR 53
Query: 60 -KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA--------ENLQGA 110
+L + +R+L+ ID + Y ++ + + A + G
Sbjct: 54 AQLGGTRILWRALQTGQIDAYAEYTGTLAQELLQLPTASQAELRAALDARGLAMTDSLGF 113
Query: 111 KYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
+ A ++ + KI + +
Sbjct: 114 QNTYAFGMRRERAQALGIVSLSDLARHPTLKIGLSNEFMQRADGWPGVRAAYALPQTATG 173
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
L R +N V + + L + F + +
Sbjct: 174 LDHD-------LAYRALQNGAIEVTDLYSTDAEIPYYQLQVLRD--DRHYFPDYQAIFLY 224
Query: 231 RSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
R D + P + + L+ ++ A + + +Q V L
Sbjct: 225 RKDLAQRSPAMLQALQGLQGRIDEATMQRLNAQVKLERQSEAAVAAHWL 273
>gi|227893627|ref|ZP_04011432.1| glycine/betaine ABC superfamily ATP binding cassette transporter
substrate binding protein [Lactobacillus ultunensis DSM
16047]
gi|227864487|gb|EEJ71908.1| glycine/betaine ABC superfamily ATP binding cassette transporter
substrate binding protein [Lactobacillus ultunensis DSM
16047]
Length = 310
Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats.
Identities = 29/275 (10%), Positives = 83/275 (30%), Gaps = 32/275 (11%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL-AVPVTFRSLKNKGIDIFMGYWYP 85
+ +++ + + L++ GY K + V ++++K+ ID++ Y
Sbjct: 46 TIILGSKNFSESKIVMQIWADALKKK-GYNVKTKPNISSSVVYQAIKSGQIDLYPEYTGT 104
Query: 86 SLEKFIA----------------PYLEEGSIKLVAENLQGAKYMLAVNDVGFALG-IKSY 128
++ + + ++ + +A+ IK+
Sbjct: 105 IAMTYLNLHIVGKNANEIAKIARKGIAKKNLTTLNYAPSNDAQGIAIRTSVAKKYGIKTI 164
Query: 129 QDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI-RRDQ 187
D+ K + ++ I + + S +
Sbjct: 165 SDLQK--NANKIRFVSQGEFDKREDGIPGLQKVYG------KFNFKSHKVYDPSLKYEIL 216
Query: 188 RNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKN 247
+ + + L + + + ++ +VR++ L P I +L
Sbjct: 217 AKGEGDITPASTTEGQLATGKYFALTD--DKHFWPDYNLVPLVRNNTLKSNPGIKNMLNK 274
Query: 248 I--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
I K + ++ K + + Q+ Q V + + +
Sbjct: 275 IDQKLTTTELQKLNKKVDVDGQNYQKVAQNWVNAN 309
>gi|209517262|ref|ZP_03266106.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia sp. H160]
gi|209502271|gb|EEA02283.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia sp. H160]
Length = 340
Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats.
Identities = 43/331 (12%), Positives = 102/331 (30%), Gaps = 46/331 (13%)
Query: 3 KILAVCLFLTTFSISYARD--ADSCTPVRFADTGWTDI-AATTAMTSVILEEILGYKTNI 59
K++A F+ + S +R+A +TS L+ LGY +
Sbjct: 6 KVIAAVATGFLFAGTVGAQTLPGSGKTIRYAQDDSLGGNYVVAQITSQALK-KLGYDVRL 64
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ + F+++ +D+ P E ++ ++ + G V+
Sbjct: 65 STMDTTLFFQAVAQGDMDLATDVTLPQREPGFRAIAQQAAVVGDGMIIGGGINGYLVDRK 124
Query: 120 GFALGIKSYQDIAKYKK-------ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ + K K + A++ +P + ++ + +
Sbjct: 125 TALAHNITNLEQMKDPKIAGLFGRDGKAEMISCDPAWSCGVVVDYQLDKFGL-KQTVSPV 183
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEEI---------- 218
A + + +N PA + +W P + + ++ +LP ++
Sbjct: 184 RGKYEALMADVITKVQNGKPAFYYAWSPSWMTNALKPGTDVVWLPTPQDALPPNIPNRGT 243
Query: 219 -----------------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKL 261
G + TV +L P + L++ I+F +A +E
Sbjct: 244 ALVNGVVGCAGGANPCRMAMGSWNYDTVANKAFLAANPAVKALIEQIRFPLATWSEWEGA 303
Query: 262 ILNNKQDRQFVGR---TMLRTHPDLLKNWLI 289
I + V + + ++ W+
Sbjct: 304 ISKDGGSVSVVKKLSDAWIASNKSQFDQWVA 334
>gi|25010307|ref|NP_734702.1| hypothetical protein gbs0233 [Streptococcus agalactiae NEM316]
gi|23094659|emb|CAD45878.1| Unknown [Streptococcus agalactiae NEM316]
Length = 308
Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats.
Identities = 36/298 (12%), Positives = 81/298 (27%), Gaps = 29/298 (9%)
Query: 6 AVCLFLTTFSISYARDADSCT----PVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
L L +IS + D+ ++ A T+ + + + ++ LGY T +
Sbjct: 10 IFTLCLALLTISGCQLTDTKKPGHTTIKVAAQSSTESSIMANIVTELIHHELGYNTTLIS 69
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWY---------------PSLEKFIAPYLEEGSIKLVA 104
+ VT ++L DI + I +
Sbjct: 70 NLGSSTVTHQALLRGDADIAATRYTGTDITGTLGLKAVKDTKEASKIVKTEFQKRYNQTW 129
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKF 164
G A I+ KK G++ + +
Sbjct: 130 YPTYGFSDTYAFMVTKEFARQNKITKISDLKKLSTTMKAGVDSSWMNREGDGYTDFAKTY 189
Query: 165 SLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEA 224
+ + + +N L + S ++ L ++
Sbjct: 190 GFEFSHIYP----MQIGLVYDAVESNKMQSVLGYSTDGRISSYDLEILRDDKKFF--PPY 243
Query: 225 SVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
VV + + K P + +LL + K ++ + ++ + + V + L +
Sbjct: 244 EASMVVNNSIIKKDPKLKKLLHRLDGKINLKTMQNLNYMVDDKLLEPSVVAKQFLEKN 301
>gi|156933914|ref|YP_001437830.1| hypothetical protein ESA_01740 [Cronobacter sakazakii ATCC BAA-894]
gi|156532168|gb|ABU76994.1| hypothetical protein ESA_01740 [Cronobacter sakazakii ATCC BAA-894]
Length = 301
Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats.
Identities = 35/277 (12%), Positives = 76/277 (27%), Gaps = 33/277 (11%)
Query: 29 RFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRSLKNKGIDIFMGYWYPS- 86
+T+ +AMT + L++ G++ +A ++ ++ NK +D+ Y S
Sbjct: 28 VLTTKSFTEQHILSAMTVLYLQKK-GFQVEPRTNIATVISRNAMINKQVDMTWEYTGTSL 86
Query: 87 --------------LEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSY---- 128
+ + + + Y A+ S
Sbjct: 87 IIFNHINKRMTPEETYNTVKKLDAKLGLVWLKPASMNNTYAFAMQRKRAEEEHISTISQL 146
Query: 129 ----QDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
+ + K + + + + + L ++ + +
Sbjct: 147 AQKVEQVRKTDPDNNWMLALDLEFYGRSDGMKPLQQAYNMPLDRPQIRQMDPG----LVY 202
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
R+ L + ++ L + +V VVR D L P +
Sbjct: 203 NAIRDGFVDAGLVYATDGRVKGFDLKVLEDDKGFF--PSYAVTPVVRKDTLAANPGLEEA 260
Query: 245 LKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
L I + + + Q Q V R LR
Sbjct: 261 LNTISGLMDNETITTLNAKVDIDHQTPQQVARDFLRD 297
>gi|38232782|ref|NP_938549.1| hypothetical protein DIP0157 [Corynebacterium diphtheriae NCTC
13129]
gi|38199040|emb|CAE48660.1| Putative secreted protein [Corynebacterium diphtheriae]
Length = 302
Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats.
Identities = 35/306 (11%), Positives = 85/306 (27%), Gaps = 35/306 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADS--------CTPVRFADTGWTDIAATTAMTSVILEEI 52
+ +I+A + ++S +S + + + S LE
Sbjct: 5 IRRIIAATVTAGALALSSCGSIESIEGGSHHNSDTIVVGSQDYYSNEIIAEIYSQALEAK 64
Query: 53 LGYKTNIKL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKL-------- 102
GY + + V +++ ID+F Y P L+ + ++
Sbjct: 65 -GYTVDRQFRIGQREVYVDEIESGRIDVFPEYTGPLLQHWKPDTEAREKTEVYQQLKEAL 123
Query: 103 ------VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
+ ++ + V + + + G +
Sbjct: 124 PEHLVALDQSAATDQDSYVVTEEFAKKHHVNSIADLAEAAKKQPLTLGANSEAQDRPNGP 183
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ GF IE S + R+N + + + P S ++ L +
Sbjct: 184 KGLEKTYGVSVGFTPIEDSGGPLT---VKALRDNSIQLAIIYSADPSISTNHLTNLEDPK 240
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ V T+ D + +L + + E+ +N + + +
Sbjct: 241 GQFL--ASHVVTIAHDDVPL---GAATVLNKVNATLTTEQLRELNARSVNEQLPSSVIAK 295
Query: 275 TMLRTH 280
++ H
Sbjct: 296 DWIKQH 301
>gi|300814371|ref|ZP_07094642.1| ABC transporter, substrate-binding protein, QAT family
[Peptoniphilus sp. oral taxon 836 str. F0141]
gi|300511479|gb|EFK38708.1| ABC transporter, substrate-binding protein, QAT family
[Peptoniphilus sp. oral taxon 836 str. F0141]
Length = 304
Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats.
Identities = 32/301 (10%), Positives = 79/301 (26%), Gaps = 29/301 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+ K+L + L T D+ V A T+ + + ++ I
Sbjct: 4 LRKLLGLVLIFLTSCSLPGIGMDTNNDVIVATGSTTERQILGNIVAQMIRHYTDLNVGII 63
Query: 61 L--LAVPVTFRSLKNKGIDIFMGYWYPSL-----------------EKFIAPYLEEGSIK 101
+ + ++ +++ G + + + YL+ + K
Sbjct: 64 SNLGSTTLINVAMIKGDLNVSGGMYTGTSLTGELGMKPIKDPEKALKTVQVEYLKRYNRK 123
Query: 102 LVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINN 161
Y V + ++ +K G++ G
Sbjct: 124 WYPSFGFANTYAFMVKKDLAQKY--DLKKVSDLEKIKDQIKVGVDTGWINRPGDGYKGFQ 181
Query: 162 NKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
+ +L S + N V L + + + L + F
Sbjct: 182 EIYGFSFNKLYP----MEISLVYTALAENEMDVVLGYSTDGRINTYGLILLED--DKRLF 235
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
V L+K + R+L + ++ ++ + + + + + L
Sbjct: 236 PPYDCSPVATIKILEKHKELDRILLKLENSIDSETMQKLNRISDEDLVEPETLAKKFLEE 295
Query: 280 H 280
H
Sbjct: 296 H 296
>gi|206578363|ref|YP_002237848.1| quaternary amine uptake ABC transporter (QAT) family, periplasmic
amine-binding protein [Klebsiella pneumoniae 342]
gi|206567421|gb|ACI09197.1| quaternary amine uptake ABC transporter (QAT) family, periplasmic
amine-binding protein [Klebsiella pneumoniae 342]
Length = 299
Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats.
Identities = 37/297 (12%), Positives = 79/297 (26%), Gaps = 31/297 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEI-LGYKTNIK 60
+ L FS+S + A S V +T+ + + + L++ + T +
Sbjct: 12 RRFRLSLLAAGLFSLSVSTFAAS---VTVGGANFTESSILANIYASALKKNHIEANTRLN 68
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS--------------IKLVAEN 106
L + +L++ IDI Y L + L+
Sbjct: 69 LGNREIIIPALQSGEIDIVPEYLGALLNFYNGKTEATSQQAVSAELAQALPADFTLLNPA 128
Query: 107 LQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPG-NEGNQRILDMINNNKFS 165
+ AV + ++ K + G P + +
Sbjct: 129 PATSITAWAVRAETAEKY--HLRTLSDLKPVAPQLVIGGPPELAVRALGLPGLKRVYGLE 186
Query: 166 LKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEAS 225
+ +++ + V + L + +
Sbjct: 187 --FKAVKSLDMGGPLTRL--ALNSGKIDVATVVSTQGNLAKEKWVVLED--DKHEQPSQN 240
Query: 226 VYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
V +VR L P IS +L + K A + + + +D V + +
Sbjct: 241 VVPLVRKASL--TPEISAVLNEVSGKLDNATLIALNQQVDLQHKDPAAVAEQWVNAN 295
>gi|295098161|emb|CBK87251.1| Periplasmic glycine betaine/choline-binding (lipo)protein of an
ABC-type transport system (osmoprotectant binding
protein) [Enterobacter cloacae subsp. cloacae NCTC 9394]
Length = 305
Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats.
Identities = 44/304 (14%), Positives = 90/304 (29%), Gaps = 32/304 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--N 58
+ I + L S+ + PV+ T+ A + +LE G KT
Sbjct: 4 IKGITGSAVLLAALSLPL----QAAEPVKVGSKIDTEGALLGNIILQVLESH-GVKTVNK 58
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------I 100
++L PV ++ + +DI+ Y F +
Sbjct: 59 VQLGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDPAWKNAKAGYEKVKKLDAEKNKL 118
Query: 101 KLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDM 158
+ + +AV G + D ++ K+ E +
Sbjct: 119 VWLTPAPANNTWTIAVRKDIAEKGKLTSLDDLSRYLKEKGEFKLAASAEFIERADALPAF 178
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEE 217
F L +L+ + + I+ + + +++ + L + L +
Sbjct: 179 EKAYDFKLDQSQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLTDPKG 238
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
+ + VVR L P+I+ LK + K ++ I D + V
Sbjct: 239 V--QPIYAPTPVVREAVLKAYPDIAEWLKPVFEKLDAKTLQQLNASIAVEGLDAKKVAAD 296
Query: 276 MLRT 279
L+
Sbjct: 297 FLKQ 300
>gi|325672935|ref|ZP_08152629.1| glycine betaine/choline ABC superfamily ATP binding cassette
transporter, binding protein [Rhodococcus equi ATCC
33707]
gi|325556188|gb|EGD25856.1| glycine betaine/choline ABC superfamily ATP binding cassette
transporter, binding protein [Rhodococcus equi ATCC
33707]
Length = 328
Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats.
Identities = 35/322 (10%), Positives = 80/322 (24%), Gaps = 52/322 (16%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCT--------------------PVRFADTGWTDIAA 40
M ++L + ++ + +S + +T+
Sbjct: 4 MRRVLVGTAVVLATTLLASCGLESGGALPLKVGPGSIAPVPELDGARITVGSKDFTEQVI 63
Query: 41 TTAMTSVILEEILGYKTN--IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFI------- 91
+ L G + T + ID+ Y ++
Sbjct: 64 LGYIIEFALSAA-GADVRDLTNIQGSNSTRDAQLAGQIDVSYEYTGTGWINYLGHEEPIP 122
Query: 92 ----------APYLEEGSIKLVAENLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKKELGA 140
LE + Y LA + G+++ D A + A
Sbjct: 123 DSRAQFEAVRDEDLERNGMVWTDPAPMNNTYALATSRATAERTGVRTLSDYAALVERDPA 182
Query: 141 KIYGI--EPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN-IPAVFLS 197
N M F I + +
Sbjct: 183 AATTCVETEFNVRQDGFPGMAAAYGFDPARADRRILQTGI----IYQATADGSQCKFGEV 238
Query: 198 WEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALE 255
+ + L++ L + + + +R D+ ++ P ++ ++ I + +
Sbjct: 239 FTTDGRIAALDLVVLEDDRQFF--PKYNPALTMREDFAERYPEVAEVMAPISAVLTDDVI 296
Query: 256 NEMMKLILNNKQDRQFVGRTML 277
+E+ K + +D V R L
Sbjct: 297 SELNKQVDVEGEDPATVARQWL 318
>gi|218463275|ref|ZP_03503366.1| choline ABC transporter, periplasmic binding protein [Rhizobium
etli Kim 5]
Length = 195
Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats.
Identities = 90/189 (47%), Positives = 132/189 (69%), Gaps = 3/189 (1%)
Query: 2 YKILAVCLF--LTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K++ L+ + ++A D DSC+ VRF+D GWTDI ATTA SV+L+ +GY+T++
Sbjct: 7 FKLVTATAVAALSVATAAFAADPDSCSTVRFSDVGWTDITATTATASVVLKS-IGYQTDV 65
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
K+L+VPVT+ SLKNK ID+F+G W + EK + PYL++ S++ NL GAKY LA N
Sbjct: 66 KVLSVPVTYTSLKNKDIDVFLGNWMETQEKDVRPYLDDKSVESFGPNLVGAKYTLATNAK 125
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
G LGIK ++DIA +K++L KIYGIEPGN+GN+ I+DMI + F +KG ++E+SE
Sbjct: 126 GAELGIKDFKDIAAHKEDLDGKIYGIEPGNDGNRLIMDMIEKDTFGMKGMEVVESSEQGM 185
Query: 180 FSQIRRDQR 188
+Q+ R +
Sbjct: 186 LAQVARADK 194
>gi|21240957|ref|NP_640539.1| ABC transporter amino acid permease [Xanthomonas axonopodis pv.
citri str. 306]
gi|21106240|gb|AAM35075.1| ABC transporter amino acid permease [Xanthomonas axonopodis pv.
citri str. 306]
Length = 489
Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats.
Identities = 30/289 (10%), Positives = 69/289 (23%), Gaps = 28/289 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI- 59
M + L + L + A V +T+ + + G
Sbjct: 1 MARALIAVVLLICSVGAQAAQ------VTIGSKNFTEAVILGEIATAA-GRRYGVDVQHR 53
Query: 60 -KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA--------ENLQGA 110
+L + +R+L+ ID + Y ++ + + A + G
Sbjct: 54 AQLGGTRILWRALETGQIDAYAEYTGTLAQELLQLPNASQAELRAALDARGLAMTDSLGF 113
Query: 111 KYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
+ A ++ + KI + +
Sbjct: 114 QNTYAFGMKRERAQALGIVSLSDLARHPTLKIGLSNEFMQRADGWPGVRAAYALPQAATG 173
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
L R ++ V + + L + V
Sbjct: 174 LDHD-------LAYRALQSGAIGVTDLYSTDAEIPYYQLQVLRDDRRYF--PDYQAIFVY 224
Query: 231 RSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
R + + P + + L+ ++ A + + +Q V L
Sbjct: 225 RKELAQRSPAMLQALRGLQGRIDEATMQRLNAQVKLERQSEAAVAAHWL 273
>gi|300311043|ref|YP_003775135.1| proline/glycine betaine ABC transporter periplasmic
substrate-binding protein [Herbaspirillum seropedicae
SmR1]
gi|124483414|emb|CAM32580.1| ABC-type proline/glycine betaine transport system, periplasmic
(osmoprotectant) binding component pr [Herbaspirillum
seropedicae]
gi|300073828|gb|ADJ63227.1| ABC-type proline/glycine betaine transport system, periplasmic
binding component protein [Herbaspirillum seropedicae
SmR1]
Length = 306
Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats.
Identities = 36/281 (12%), Positives = 77/281 (27%), Gaps = 32/281 (11%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL-AVPVTFRSLKNKGIDIFMGY 82
+ +T+ + MT+ L GY T +K + +L++ +DI Y
Sbjct: 29 QAQHLVIGGKNFTEQLLLSDMTAQYLRAK-GYDTELKNGLGTTLMRSALESGQLDIVWDY 87
Query: 83 WYPS---------------LEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKS 127
+ + + + + + ++ Y A+
Sbjct: 88 TGTALIVYNHIEDKLDPDQIYQKVKELDAPRGLTWLNQSELNNTYAFAMPRALADKYNIH 147
Query: 128 YQDIAKYKKELGAKIYGIE-------PGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ K G + M F L + +
Sbjct: 148 SLQDLAKRINEDDKEGGQPHLMGVDYEFASRPDGLGPMQQLYGFKLDRSEVKQMDPG--- 204
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ +N V L++ ++ L + VVR + L K P
Sbjct: 205 -LVYTALKNEQLFVGLTYASDGRIKGFDLQLLEDDKGYF--AAYKATPVVRQEILAKHPK 261
Query: 241 ISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++ L + K A E+ K + +++ V L+
Sbjct: 262 LAEQLNELAAKIDTATMTELNKRVDIDQEPVAKVAADFLKQ 302
>gi|16263251|ref|NP_436044.1| ABC transporter [Sinorhizobium meliloti 1021]
gi|307304430|ref|ZP_07584181.1| Substrate-binding region of ABC-type glycine betaine transport
system [Sinorhizobium meliloti BL225C]
gi|307318138|ref|ZP_07597574.1| Substrate-binding region of ABC-type glycine betaine transport
system [Sinorhizobium meliloti AK83]
gi|14523924|gb|AAK65456.1| ABC transporter, periplasmic solute-binding protein [Sinorhizobium
meliloti 1021]
gi|306896179|gb|EFN26929.1| Substrate-binding region of ABC-type glycine betaine transport
system [Sinorhizobium meliloti AK83]
gi|306902632|gb|EFN33226.1| Substrate-binding region of ABC-type glycine betaine transport
system [Sinorhizobium meliloti BL225C]
Length = 296
Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats.
Identities = 40/289 (13%), Positives = 87/289 (30%), Gaps = 27/289 (9%)
Query: 10 FLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL-AVPVTF 68
L+ +I+ + +T+ +T +LE G+ + K +
Sbjct: 11 LLSAAAIALVTTTAWAATITVGGKNFTEQLIIAEITKQLLESK-GHTVDKKDGMGTKIVR 69
Query: 69 RSLKNKGIDIFMGYWYPSLEKF---------------IAPYLEEGSIKLVAENLQGAKYM 113
+L+N +D++ Y SL F + E + +A + Y
Sbjct: 70 AALENGEVDLYWEYTGTSLITFNKVTERLSPEETYNRVKELDGEKGLVWLAPSAANNTYA 129
Query: 114 LAVNDVGFA-LGIKSYQDIAKYKKELGAKIYG-IEPGNEGNQRILDMINNNKFSLKGFRL 171
V G+++ D+AK + + G + ++ + F +
Sbjct: 130 YVVKPGNAKTEGMETISDLAKAYNDGKDILMGTTAEFPKRPDGLIGLEKVYGFETGRANV 189
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVR 231
N + + L + L + ++ VVR
Sbjct: 190 RPMD----LGLAYNALANGDLDTIAAQATDGQIAALGLKTLKDDKGFF--PNYALTPVVR 243
Query: 232 SDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
+ LD P++ L+ + K A + + K+ + V L+
Sbjct: 244 KEVLDANPDLKETLETVSKKLDDATMQRLNSQVDVEKKTIETVAADYLK 292
>gi|221068272|ref|ZP_03544377.1| Substrate-binding region of ABC-type glycine betaine transport
system [Comamonas testosteroni KF-1]
gi|220713295|gb|EED68663.1| Substrate-binding region of ABC-type glycine betaine transport
system [Comamonas testosteroni KF-1]
Length = 356
Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats.
Identities = 33/313 (10%), Positives = 85/313 (27%), Gaps = 36/313 (11%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRSLKNK 74
V + + T + L++ LGY + L P+ ++ N
Sbjct: 42 APGNALPGQGITVLPVKSALAEENFQTLLVMKALQQ-LGYTVKPWEELDYPLIHVAVANG 100
Query: 75 GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKS------- 127
+W P +F + + GA ++ +
Sbjct: 101 DASFMANHWNPHHAEFYQQAGGDAKLSRKGVYAAGAAQGYMIDKKTADKHQITHLDQLKD 160
Query: 128 --YQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
+ + A + G G G + I + + A +
Sbjct: 161 PGLAALFDIDGDGKANLIGPNAGWGGEAVVAHQIKAFGLE-NTVSYTQGNYPALIADTLA 219
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI---------------------SGFGEA 224
+ P ++ +W P+ +++ L ++ GF
Sbjct: 220 RFKAGKPVLYYAWTPYWLSNVLRPGQEVVWLQVSRSSMPGVQAGTDTKLPNGRNYGFPLN 279
Query: 225 SVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV---GRTMLRTHP 281
+ Y V ++++ P +L + ++ + + +L+ + + + ++ H
Sbjct: 280 NEYIVANKLWVEQNPAAGKLFEIMQIPINDISRQNQLLRDGESKPTDIQRHVDAWIKAHQ 339
Query: 282 DLLKNWLIGVTTF 294
W+
Sbjct: 340 KTFDTWIAQAKAA 352
>gi|320534786|ref|ZP_08035207.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Actinomyces sp. oral taxon
171 str. F0337]
gi|320133007|gb|EFW25534.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Actinomyces sp. oral taxon
171 str. F0337]
Length = 244
Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats.
Identities = 50/247 (20%), Positives = 92/247 (37%), Gaps = 14/247 (5%)
Query: 41 TTAMTSVILEEILGYKTNIK-LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS 99
T + LE+ GY+ + L + L +D+F W +K
Sbjct: 1 MTHLLKTQLEKA-GYQIKLMDLSEAGPLYAGLSQGAVDLFPSAWPDVTQKSYMDKYRTY- 58
Query: 100 IKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL-DM 158
I+ + AK +V D KS +DI + ++ KI GIEPG + D+
Sbjct: 59 IEDLGTYYDSAKLCWSVPDYSSM---KSIEDIKSHASQIDNKIVGIEPGAGLTKVSQEDV 115
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
I + + +S +++++ V W P N+ N+ L +
Sbjct: 116 IPAYDLGDM--KFLTSSTTGMLAELKKAVDAKNEIVVTLWHPFWANTTFNMRDLKDPKGA 173
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILN---NKQDRQFVGRT 275
G GE ++ + R + + P I++ L +IK A + L++N ++
Sbjct: 174 LGKGEG-LHFLGREGFAQEYPEIAKWLGSIKMDEATYGSLEDLVVNTYGEGRE-DEAAID 231
Query: 276 MLRTHPD 282
+ HP
Sbjct: 232 WAKKHPQ 238
>gi|167565251|ref|ZP_02358167.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
oklahomensis EO147]
Length = 125
Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats.
Identities = 43/116 (37%), Positives = 64/116 (55%), Gaps = 2/116 (1%)
Query: 195 FLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSV 252
L WEPH N+ ++ YL GG+ +G A+V TV R+D+L +C N++RL + + F+V
Sbjct: 8 ILGWEPHLTNTKFHLVYLSGGDAYFGPNYGGATVNTVARADFLGRCANLARLFRQMTFTV 67
Query: 253 ALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
LENEM+ +L K + LR HP L+ WL GVTT G + ++
Sbjct: 68 DLENEMIAGMLQEKLSAVDAAQRALRAHPSLVDEWLGGVTTATGAPGLPAVRAALD 123
>gi|150397161|ref|YP_001327628.1| substrate-binding region of ABC-type glycine betaine transport
system [Sinorhizobium medicae WSM419]
gi|150028676|gb|ABR60793.1| Substrate-binding region of ABC-type glycine betaine transport
system [Sinorhizobium medicae WSM419]
Length = 314
Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats.
Identities = 39/288 (13%), Positives = 80/288 (27%), Gaps = 27/288 (9%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPS 86
+ A W A + + + ++ L F L+ IDI W P+
Sbjct: 25 DLVIAMPPWPSGQAAANILKFGIAKKFSLDAEVRELGTLNAFVGLEKGEIDIQPEVWRPN 84
Query: 87 LEKFIAPYLEEGSIKLVAENLQGAKYML-AVNDVGFALGIKSYQDIAKYKKELGAKIYGI 145
++ + ++ E ++ A + A + + + K L G
Sbjct: 85 FDELVRKFVTEKGAVTLSTRAVPAWQGICATPEAAATIKTVADLGDPAKTKFLDTDGDGR 144
Query: 146 EPGN-----EGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEP 200
+ I L+EA E + + + P VF + P
Sbjct: 145 GEMWIGAAEWLSTGIERARAAGYGYAANLTLVEAKEDVAMAAVDAAIATARPMVFYCYAP 204
Query: 201 HPINSDLN----IHYLPGGEEISGFGEASVYTVVR-----------------SDYLDKCP 239
H + + V + + + K P
Sbjct: 205 HHVFKLHQISRLEEPPHDPSKWKIAPPNDPLWVSKSSASTAWDAGQFQIGYATAFAKKHP 264
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
+++ L+N+ FS M + +Q R + +H + + W
Sbjct: 265 EVAQFLQNVDFSPDEVTAMSYALQVERQTPVDYARKWVESHAERIDGW 312
>gi|239918059|ref|YP_002957617.1| periplasmic glycine betaine/choline-binding (lipo)protein of an
ABC-type transport system (osmoprotectant binding
protein) [Micrococcus luteus NCTC 2665]
gi|281415760|ref|ZP_06247502.1| periplasmic glycine betaine/choline-binding (lipo)protein of an
ABC-type transport system (osmoprotectant binding
[Micrococcus luteus NCTC 2665]
gi|239839266|gb|ACS31063.1| periplasmic glycine betaine/choline-binding (lipo)protein of an
ABC-type transport system (osmoprotectant binding
protein) [Micrococcus luteus NCTC 2665]
Length = 335
Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats.
Identities = 28/281 (9%), Positives = 68/281 (24%), Gaps = 26/281 (9%)
Query: 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPVTFRSLKNKGI 76
A V + + +T++++ G + ++ +
Sbjct: 55 AGIDLEGAHVAVGSKNFNEGVVLGKITAILMRSA-GADVEDLTNMPGSLSARQAQVAGVV 113
Query: 77 DIFMGYWYPSLEKFI----------------APYLEEGSIKLVAENLQGAKYMLAVNDVG 120
D+ Y + ++ + + + Y L+V
Sbjct: 114 DVEWDYTGTAWITYLGHTDPIPDAQAQWAAVRDEDAQQGLVWLPPAELDNTYTLSVRQDR 173
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
K N L M+
Sbjct: 174 AEELGLETLADIKDLPTEEQSFCVSAEFAARNDGFLPMLEAYGIERPTG---SRLRQMDI 230
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ + ++ + L++ L +S F + + +VR + L + P
Sbjct: 231 GAVFAAVADGSCTFGEAYSTDGRIAALDLTTLQDP--LSFFPKYNAAPIVREEVLAQHPE 288
Query: 241 ISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
I+ LL + A + + + ++ V LR
Sbjct: 289 IADLLAPVTARLDNATAARLNARVDVDGEEPTQVAWDWLRE 329
>gi|113866966|ref|YP_725455.1| ABC transporter periplasmic protein [Ralstonia eutropha H16]
gi|113525742|emb|CAJ92087.1| ABC-type transporter, periplasmic component: QATfamily [Ralstonia
eutropha H16]
Length = 318
Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats.
Identities = 42/291 (14%), Positives = 91/291 (31%), Gaps = 30/291 (10%)
Query: 13 TFSISYARDA-DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL-AVPVTFRS 70
+++ A +A TP+R +T+ ++MTS L G T + + ++
Sbjct: 32 GLALATAPEARAEATPIRVGGKNFTEQLLLSSMTSKYLRAK-GLTTELTAGLGSTLMRQA 90
Query: 71 LKNKGIDIFMGYWYPS---------------LEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
+++ +D+ Y + + + + + + Y LA
Sbjct: 91 MESNQLDVVWDYTGTALIVFNKVQEKLGARESYERVKQMDGARGLVWLDASNINNTYALA 150
Query: 116 VNDVGFALGIKSYQDIAKYK----KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
+ A G+ + A+ + + + K +
Sbjct: 151 MPKERAASGVTTLSGFAEQMRRAGSDASHPFAVDMEFAARPDGLEPLKALYKLPFSRRDV 210
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVR 231
I+ + +NN + L + ++ L ++ F + VVR
Sbjct: 211 IQLDPG----LVYTALKNNQVELGLVYATDGRVKGFDLVLLED--DLHFFPPYNAVPVVR 264
Query: 232 SDYLDKCPNISRLLKNIKF--SVALENEMMKLILNNKQDRQFVGRTMLRTH 280
LDK P ++ LL + +M + +Q V LR+H
Sbjct: 265 KPVLDKHPELAGLLNALAAKLDNESMTDMNYKVDIGQQPVDKVAEDFLRSH 315
>gi|288934777|ref|YP_003438836.1| substrate-binding region of ABC-type glycine betaine transporter
[Klebsiella variicola At-22]
gi|288889486|gb|ADC57804.1| Substrate-binding region of ABC-type glycine betaine transport
system [Klebsiella variicola At-22]
Length = 299
Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats.
Identities = 37/297 (12%), Positives = 79/297 (26%), Gaps = 31/297 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEI-LGYKTNIK 60
+ L FS+S + A S V +T+ + + + L++ + T +
Sbjct: 12 RRFRLSLLAAGLFSLSVSTFAAS---VTVGGANFTESSILANIYASALKKNHIEANTRLN 68
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS--------------IKLVAEN 106
L + +L++ IDI Y L + L+
Sbjct: 69 LGNREIIIPALQSGEIDIVPEYLGALLNFYNGKTEATSQQAVSAELAQALPADFTLLNPA 128
Query: 107 LQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPG-NEGNQRILDMINNNKFS 165
+ AV + ++ K + G P + +
Sbjct: 129 PATSITAWAVRAETAEKY--HLRTLSNLKPVAPQLVIGGPPELAVRALGLPGLKRVYGLE 186
Query: 166 LKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEAS 225
+ +++ + V + L + +
Sbjct: 187 --FKAVKSLDMGGPLTRL--ALNSGKIDVATVVSTQGNLAKEKWVVLED--DKHEQPSQN 240
Query: 226 VYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
V +VR L P IS +L + K A + + + +D V + +
Sbjct: 241 VVPLVRKASL--TPEISAVLNEVSGKLDNATLIALNQQVDLQHKDPAAVAEQWVNAN 295
>gi|312141807|ref|YP_004009143.1| glycine betaine ABC transporter substrate-binding protein
[Rhodococcus equi 103S]
gi|311891146|emb|CBH50465.1| putative glycine betaine ABC transporter substrate binding
lipoprotein [Rhodococcus equi 103S]
Length = 328
Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats.
Identities = 35/322 (10%), Positives = 80/322 (24%), Gaps = 52/322 (16%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCT--------------------PVRFADTGWTDIAA 40
M ++L + ++ + +S + +T+
Sbjct: 4 MRRVLVGTAVVLATTLLASCGLESGGALPLKVGPGSIAPVAELDGARITVGSKDFTEQVI 63
Query: 41 TTAMTSVILEEILGYKTN--IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFI------- 91
+ L G + T + ID+ Y ++
Sbjct: 64 LGYIIEFALSAA-GADVRDLTNIQGSNSTRDAQLAGQIDVSYEYTGTGWINYLGHEEPIP 122
Query: 92 ----------APYLEEGSIKLVAENLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKKELGA 140
LE + Y LA + G+++ D A + A
Sbjct: 123 DSRAQFEAVRDEDLERNGMVWTDPAPMNNTYALATSRATAERTGVRTLSDYAALVERDPA 182
Query: 141 KIYGI--EPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN-IPAVFLS 197
N M F I + +
Sbjct: 183 AATTCVETEFNVRQDGFPGMAAAYGFDPARADRRILQTGI----IYQATADGSQCKFGEV 238
Query: 198 WEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALE 255
+ + L++ L + + + +R D+ ++ P ++ ++ I + +
Sbjct: 239 FTTDGRIAALDLVVLEDDRQFF--PKYNPALTMREDFAERYPEVAEVMAPISAVLTDDVI 296
Query: 256 NEMMKLILNNKQDRQFVGRTML 277
+E+ K + +D V R L
Sbjct: 297 SELNKQVDVEGEDPATVARQWL 318
>gi|289665040|ref|ZP_06486621.1| ABC transporter permease and substrate-binding protein [Xanthomonas
campestris pv. vasculorum NCPPB702]
Length = 490
Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats.
Identities = 31/289 (10%), Positives = 71/289 (24%), Gaps = 28/289 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI- 59
M + L + L A V +T+ + + + G
Sbjct: 2 MARALIAVVLLICSLGVQAAQ------VTIGSKNFTEAVILGEIATAAGKRD-GVDVQHR 54
Query: 60 -KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA--------ENLQGA 110
+L + +R+L+ ID + Y ++ + + A + G
Sbjct: 55 AQLGGTRILWRALETGQIDAYAEYTGTLAQELLQLPNANQAELRAALDARGLAMTDSLGF 114
Query: 111 KYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
+ A ++ + KI + +
Sbjct: 115 QNTYAFGMKRERAQALGIAALSDLARHPTLKIGLSNEFMQRADGWPGVRAAYALPQSATG 174
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
L R ++ V + + L + F + +
Sbjct: 175 LDHD-------LAYRALQSGAIEVTDLYSTDAEIPYYQLQVLRD--DQHYFPDYQAIFLY 225
Query: 231 RSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
R D + P + + L+ ++ A + + +Q V L
Sbjct: 226 RKDLAQRSPAMLQALQGLQGRIDEATMQRLNAQVKLERQSEAAVAAHWL 274
>gi|260598008|ref|YP_003210579.1| hypothetical protein CTU_22160 [Cronobacter turicensis z3032]
gi|260217185|emb|CBA31039.1| hypothetical protein CTU_22160 [Cronobacter turicensis z3032]
Length = 273
Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats.
Identities = 35/276 (12%), Positives = 76/276 (27%), Gaps = 33/276 (11%)
Query: 30 FADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRSLKNKGIDIFMGYWYPS-- 86
+T+ +AMT + L++ G++ +A ++ ++ NK +D+ Y S
Sbjct: 1 MTTKSFTEQHILSAMTVLYLQKK-GFQVEPRTNIATVISRNAMINKQVDMTWEYTGTSLI 59
Query: 87 -------------LEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSY----- 128
+ + + + Y A+ S
Sbjct: 60 IFNHINKRMTPEETYNTVKQLDAKLGLVWLKPASMNNTYAFAMQRKRAEEEHISTISQLA 119
Query: 129 ---QDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
+ + K + + + + + L ++ + +
Sbjct: 120 EKIEQVRKTDPDKNWMLALDLEFYGRSDGMKPLQQAYNMPLDRPQIRQMDPG----LVYN 175
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
R+ L + ++ L + +V VVR D L P + L
Sbjct: 176 AIRDGFVDAGLVYATDGRVKGFDLKVLEDDKGFF--PSYAVTPVVRKDTLAANPGLEDAL 233
Query: 246 KNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
I + + + Q Q V R LR
Sbjct: 234 NTISGLMDNDTITTLNAKVDIDHQTPQQVARDFLRD 269
>gi|116620326|ref|YP_822482.1| substrate-binding region of ABC-type glycine betaine transporter
[Candidatus Solibacter usitatus Ellin6076]
gi|116223488|gb|ABJ82197.1| Substrate-binding region of ABC-type glycine betaine transport
system [Candidatus Solibacter usitatus Ellin6076]
Length = 281
Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats.
Identities = 23/277 (8%), Positives = 72/277 (25%), Gaps = 29/277 (10%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGIDIFM 80
+ + +T+ + + +E L L + ++ + ID++
Sbjct: 7 GTKPEIVVGSKNFTEQVLLGEILAQHIERRLHVTVGRKFNLGGTLLAQAAITSGAIDLYP 66
Query: 81 GYWYPSLEKFIA----------------PYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
Y +L + Y + ++ + + + V
Sbjct: 67 EYSGTALTAVLKLPPSKDAGAVMQQVRDGYRRQWGLEWLPPLGFNNTFAMMVRGDIARPT 126
Query: 125 IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
+ + + K+ + + ++ G +
Sbjct: 127 --GIKTLTDAARLQAWKLGAGYEFKQRTDGLAGLLATYGLRTDGE-----PVTMDLGLLY 179
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
++ + + + + L++ L + F V R++ L + +
Sbjct: 180 AALKSRKVDMIAANSTDGLAAVLDVKMLED--DRHYFPPYECAVVARAESLARHAGLREA 237
Query: 245 LKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
L + K + A ++ + + V L
Sbjct: 238 LAEVSGKLNDATMRKLNFGVDGEHRPPAQVAGQFLDA 274
>gi|312873019|ref|ZP_07733079.1| ABC transporter, substrate-binding protein, QAT family
[Lactobacillus iners LEAF 2062A-h1]
gi|311091541|gb|EFQ49925.1| ABC transporter, substrate-binding protein, QAT family
[Lactobacillus iners LEAF 2062A-h1]
Length = 502
Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats.
Identities = 34/307 (11%), Positives = 89/307 (28%), Gaps = 36/307 (11%)
Query: 1 MYKILAVCLFLTTFSISY------ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
M+ I+ + + + ++ + A + M ++LE+
Sbjct: 204 MFLIIVLLFGIVSLGAYSLNNIKTVANSAKSEQIIIASKDDSQFDIIANMYKILLEKNKK 263
Query: 55 YKTNIKLLAVP-VTFRSLKNKGIDIFMG----------------YWYPSLEKFIAPYLEE 97
Y + L+N IDI+ L ++ L +
Sbjct: 264 YHVTFSRRKDDRQILKELRNGNIDIYPEETRKVFSLIDNSDKKFANIDELYRYTRDILYK 323
Query: 98 GSIKLVAEN-LQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
+ + ++A + I D+ KYK +L ++ + + +
Sbjct: 324 QDLIYMTPMAYHNNYVLIADKEFAKQNKITKISDLQKYKSKLVVGMF--KDFADSSNGYE 381
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ + K + A Q R + + P N+ L
Sbjct: 382 GLKDVYKLDFPKMSVTTAD------QCYEKLRKRQVNLIAATSNDPEIKKNNLLILND-- 433
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F V ++ + K + ++++ + K + ++ + ++ V +
Sbjct: 434 DKYYFVPYQVAPIITKRFAKKHHQVVKIIEKLAGKITDDEMIQLETRVKLEHKNAAKVAK 493
Query: 275 TMLRTHP 281
L+ +
Sbjct: 494 AFLQRNK 500
>gi|327533576|pdb|3MAM|A Chain A, A Molecular Switch Changes The Low To The High Affinity
State In The Substrate Binding Protein Afprox
Length = 270
Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats.
Identities = 35/273 (12%), Positives = 84/273 (30%), Gaps = 27/273 (9%)
Query: 26 TPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL--AVPVTFRSLKNKGIDIFMGYW 83
V + + M +++LEE GYK +K V + +LK I +++ Y
Sbjct: 1 ERVVIGSKPFNEQYILANMIAILLEEN-GYKAEVKEGLGGTLVNYEALKRNDIQLYVEYT 59
Query: 84 YPSLEKFIAPYLEEGSIK----------------LVAENLQGAKYMLAVNDVGFALGIKS 127
+ + E + +V G + A+
Sbjct: 60 GTAYNVILRKQPPELWDQQYIFDEVKKGLLEADGVVVAAKLGFRDDAALAVRADWAEENG 119
Query: 128 YQDIAKYKKELGAKIYGIEP-GNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRD 186
+ I+ + ++G +P + + F K + +E + +
Sbjct: 120 VEKISDLAEFADQLVFGSDPEFASRPDGLPQIKKVYGFEFKEVKQMEP------TLMYEA 173
Query: 187 QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLK 246
+N V ++ N+ L + +A + + +K ++ +LL+
Sbjct: 174 IKNKQVDVIPAYTTDSRVDLFNLKILEDDKGALPPYDAIIIVNGNTAKDEKLISVLKLLE 233
Query: 247 NIKFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+ + K+D + + + L+
Sbjct: 234 DR-IDTDTMRALNYQYDVEKKDAREIAMSFLKE 265
>gi|188989580|ref|YP_001901590.1| glycine betaine/carnitine/choline-binding ABC transporter
substrate-binding and permease component [Xanthomonas
campestris pv. campestris str. B100]
gi|167731340|emb|CAP49515.1| glycine betaine/carnitine/choline-binding ABC transporter
substrate-binding and permease component [Xanthomonas
campestris pv. campestris]
Length = 490
Score = 109 bits (271), Expect = 6e-22, Method: Composition-based stats.
Identities = 30/291 (10%), Positives = 73/291 (25%), Gaps = 31/291 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI- 59
M + A+ + S A V +T+ + + + G +
Sbjct: 1 MMR--ALLMVFAFLICSGVAQAAQ---VTIGSKNFTEAVILGEIATAA-GQRDGVQVQHR 54
Query: 60 -KLLAVPVTFRSLKNKGIDIFMGYWYP----------SLEKFIAPYLEEGSIKLVAENLQ 108
+L + +R+L+ ID + Y + + L+ + +
Sbjct: 55 AQLGGTRILWRALETGQIDAYADYTGTLAQELLQLPKASHAELRAALDARGLAMTDSLGF 114
Query: 109 GAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
Y + + ++ + KI + + +
Sbjct: 115 ENTYAFGMRRERAQA--LGVRSLSDLARHPDLKIGLSNEFMQRADGWPGVRGAYALPQRA 172
Query: 169 FRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYT 228
L R ++ V + + L + F E
Sbjct: 173 TGLDHD-------LAYRALQSGAIEVTDLYSTDAEIPYYQLQVLQD--DRHYFSEYQAVF 223
Query: 229 VVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
+ R D + P + L+ ++ A + + ++ V L
Sbjct: 224 LYRKDLAQRAPKMVATLQGLQGRIDEATMQRLNAQVKLERKSESAVAAQWL 274
>gi|290508902|ref|ZP_06548273.1| quaternary amine uptake ABC transporter (QAT) family, periplasmic
amine-binding protein [Klebsiella sp. 1_1_55]
gi|289778296|gb|EFD86293.1| quaternary amine uptake ABC transporter (QAT) family, periplasmic
amine-binding protein [Klebsiella sp. 1_1_55]
Length = 299
Score = 109 bits (271), Expect = 7e-22, Method: Composition-based stats.
Identities = 35/297 (11%), Positives = 77/297 (25%), Gaps = 31/297 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEI-LGYKTNIK 60
+ L FS+S + A V +T+ + + + L++ + T +
Sbjct: 12 RRFRLSLLAAGLFSLSVSTYAAG---VTVGGANFTESSILANIYASALKKNHIEANTRLN 68
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS--------------IKLVAEN 106
L + +L++ IDI Y L + L+
Sbjct: 69 LGNREIIIPALQSGEIDIVPEYLGALLNFYNGKTEATSQQDVSAELAQALPADFTLLNPA 128
Query: 107 LQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPG-NEGNQRILDMINNNKFS 165
+ AV + ++ K + G P + +
Sbjct: 129 PATSITAWAVRAETAEKY--HLRTLSDLKPVAPQLVIGGPPELAVRALGLPGLKRVYGLE 186
Query: 166 LKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEAS 225
+ +++ + V + L + +
Sbjct: 187 --FKAVKSLDMGGPLTRL--ALNSGKIDVATVVSTQGNLAKEKWVVLED--DKHEQPSQN 240
Query: 226 VYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
V +VR L P I +L + K A + + + +D V + +
Sbjct: 241 VVPLVRKASL--TPEIGAVLNEVSGKLDNATLIALNQQVDLQHKDPAAVAEQWVNAN 295
>gi|259500562|ref|ZP_05743464.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Lactobacillus iners DSM 13335]
gi|302191252|ref|ZP_07267506.1| ABC-type proline/glycine betaine transport system, permease and
substrate binding protein [Lactobacillus iners AB-1]
gi|259167946|gb|EEW52441.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Lactobacillus iners DSM 13335]
Length = 502
Score = 109 bits (271), Expect = 7e-22, Method: Composition-based stats.
Identities = 34/307 (11%), Positives = 88/307 (28%), Gaps = 36/307 (11%)
Query: 1 MYKILAVCLFLTTFSISY------ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
M+ I+ + + + ++ + A + M ++LE+
Sbjct: 204 MFLIIVLLFGIVSLGAYSLNNIKTVANSAKSEQIIIASKDDSQFDIIANMYKILLEKNKK 263
Query: 55 YKTNIKLLAVP-VTFRSLKNKGIDIFMG----------------YWYPSLEKFIAPYLEE 97
Y + L+N IDI+ L ++ L +
Sbjct: 264 YHVTFSRRKDDRQILKELRNGNIDIYPEETRKVFSLIDNSDKKFANIDELYRYTRDILYK 323
Query: 98 GSIKLVAEN-LQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
+ + ++A + I D+ KYK +L ++ + +
Sbjct: 324 QDLIYMTPMAYHNNYVLIADKEFAKQNKITKISDLQKYKSKLVVGMF--KDFAYSSNGYE 381
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ + K + A Q R + + P N+ L
Sbjct: 382 GLKDVYKLDFPKMSVTTAD------QCYEKLRKRQVNLIAATSNDPEIKKNNLLILND-- 433
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F V ++ + K + ++++ + K + ++ + ++ V +
Sbjct: 434 DKYYFVPYQVAPIITKRFAKKHHQVVKIIEKLAGKITDDEMIQLETQVKLEHKNAAKVAK 493
Query: 275 TMLRTHP 281
L+ +
Sbjct: 494 AFLQRNK 500
>gi|254559094|ref|YP_003066189.1| glycine/betaine ABC transporter periplasmic protein
[Methylobacterium extorquens DM4]
gi|254266372|emb|CAX22136.1| ABC transporter, periplasmic protein, putative glycine/betaine
transporter [Methylobacterium extorquens DM4]
Length = 303
Score = 109 bits (271), Expect = 7e-22, Method: Composition-based stats.
Identities = 36/284 (12%), Positives = 82/284 (28%), Gaps = 28/284 (9%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--LLAVPVTFRSLKNKGID 77
A+ P+ T+ A + S+++E+ LG + + L + +L ID
Sbjct: 19 ARAEPGRPIVIGSKSDTEGALLGNLISLVIED-LGLRVERRLGLGPTLIVRSALLAGEID 77
Query: 78 IFMGYWYPSLEKFIAPYLEEGS-----------------IKLVAENLQGAKYMLAVNDVG 120
++ Y + + +++AV
Sbjct: 78 LYPEYTGNVAFFSGTETDPAWKNSAGAYGLALRLDAAHGLVWLGRAPANNTWLIAVQGRL 137
Query: 121 F-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
G+ + D A ++ ++ E + + FSL R++ +
Sbjct: 138 ARERGLATMADFAGAVRDGAIRLAASTEFVESPAALPSFESAYGFSLPLSRIV-SLPGGD 196
Query: 180 FSQIRRDQRNNI--PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDK 237
+ R I + + + L++ + + V+R+ L+
Sbjct: 197 TAVTARAAAEGISGINAGMVYGTDGALAALDLTVMSDPKGAQI--VYEPAPVIRAATLEC 254
Query: 238 CPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
P I L I + + I + + V + L
Sbjct: 255 HPRIREALDPIFARLDADTLRRLNAAITVEGRTGEAVAKAWLAE 298
>gi|289669834|ref|ZP_06490909.1| ABC transporter permease and substrate-binding protein [Xanthomonas
campestris pv. musacearum NCPPB4381]
Length = 490
Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats.
Identities = 31/289 (10%), Positives = 71/289 (24%), Gaps = 28/289 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI- 59
M + L + L A V +T+ + + + G
Sbjct: 2 MARALIAVVLLICSLGVQAAQ------VTIGSKNFTEAVILGEIATAAGKRD-GVDVQHR 54
Query: 60 -KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA--------ENLQGA 110
+L + +R+L+ ID + Y ++ + + A + G
Sbjct: 55 AQLGGTRILWRALETGQIDAYAEYTGTLAQELLQLPNANQAELGAALDARGLAMTDSLGF 114
Query: 111 KYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
+ A ++ + KI + +
Sbjct: 115 QNTYAFGMKRERAQALGIAALSDLARHPTLKIGLSNEFMQRADGWPGVRAAYALPQSATG 174
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
L R ++ V + + L + F + +
Sbjct: 175 LDHD-------LAYRALQSGAIEVTDLYSTDAEIPYYQLQVLRD--DQHYFPDYQAIFLY 225
Query: 231 RSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
R D + P + + L+ ++ A + + +Q V L
Sbjct: 226 RKDLAQRSPAMLQALQGLQGRIDEATMQRLNAQVKLERQSEAAVAAHWL 274
>gi|218507246|ref|ZP_03505124.1| probable glycine betaine/L-proline ABC transporter,
substrate-binding protein [Rhizobium etli Brasil 5]
Length = 204
Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats.
Identities = 31/205 (15%), Positives = 75/205 (36%), Gaps = 9/205 (4%)
Query: 83 WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKI 142
+ + + ++ ++ G +AV I S + + + + G KI
Sbjct: 3 QTDYVAQDYWDK-NKNRLEKISPVSHGLYQGVAVPKYVP---IDSLEQLNENADKFGGKI 58
Query: 143 YGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP 202
GIEPG + + + L +L+E S A + ++ WEP
Sbjct: 59 IGIEPGAGLMRDTSNAVKEYGLKL---QLVEGSTAAMTAALKSAYDRQEWIAVTIWEPSW 115
Query: 203 INSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI 262
+ + YL + + ++ Y + + ++ P+ ++ ++ +A + +
Sbjct: 116 MVQKYEVKYLKDPKGVFPPPQSY-YWIGHKGFSEEYPHAREVMASVYVPIADITTINGAV 174
Query: 263 LNNKQDRQFVGRTMLRTHPDLLKNW 287
+ + + + +H DL+K W
Sbjct: 175 K-DGKTMDQAVQDWIGSHADLIKRW 198
>gi|297625856|ref|YP_003687619.1| permease binding-protein component ABC transporter
[Propionibacterium freudenreichii subsp. shermanii
CIRM-BIA1]
gi|296921621|emb|CBL56175.1| Permease binding-protein component ABC transporter
[Propionibacterium freudenreichii subsp. shermanii
CIRM-BIA1]
Length = 343
Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats.
Identities = 33/310 (10%), Positives = 72/310 (23%), Gaps = 43/310 (13%)
Query: 4 ILAVCLFLTTFSISYARDADSCTP--------------VRFADTGWTDIAATTAMTSVIL 49
++A L ++ ++ + + V +T+ + ++L
Sbjct: 30 VMACSLIFSSCALGTSGGLSAKGKLAGSLADINLRGQSVAVGSKNFTEQLVLGKIAVILL 89
Query: 50 EEILGYKTN--IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFI---------------- 91
+ G N + ++L + ID Y ++
Sbjct: 90 KSA-GADVNDLTNIPGSSSARQALLSGQIDFQWEYTGTGWISYLGHSDPITDPEQQYVAV 148
Query: 92 -APYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNE 150
L + + + Y A+ S N
Sbjct: 149 RDEDLAKNHMVWLPPAPMNNTYGFAITQKTKDRLGVSKLSDLAALPSSELSFCVESELNS 208
Query: 151 GNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIH 210
N M SL + I + + + LN+
Sbjct: 209 RNDGFEPMAAKYDLSLGQVQRKVLD----TGAIYSATADGLCNFGEVFTTDGRIKALNLT 264
Query: 211 YLPGGEEISGFGEASVYTVVRSDYLDKCPNIS-RLLKNIK--FSVALENEMMKLILNNKQ 267
L + F +V V+R +K + L + + M + +
Sbjct: 265 VLED--DRHFFPNYNVSPVMRQKTYNKAADQYRELFDPVSKALTNDALLAMNAEVDVQGR 322
Query: 268 DRQFVGRTML 277
+ V L
Sbjct: 323 EPADVAYDWL 332
>gi|320106583|ref|YP_004182173.1| Substrate-binding region of ABC-type glycine betaine transport
system [Terriglobus saanensis SP1PR4]
gi|319925104|gb|ADV82179.1| Substrate-binding region of ABC-type glycine betaine transport
system [Terriglobus saanensis SP1PR4]
Length = 288
Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats.
Identities = 33/277 (11%), Positives = 77/277 (27%), Gaps = 27/277 (9%)
Query: 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGI 76
A D + + A +T+ + + +E G + + + ++L + I
Sbjct: 14 ACDPPRSSRLTIACKNFTEQVLLGELLAQEVEAE-GEPVDRRFYLAGSYIAHQALTSGRI 72
Query: 77 DIFMGYWYPSLEKFIAPYL--------------EEGSIKLVAENLQGAKYMLAVNDVGFA 122
D ++ Y SL + L E + G + A+
Sbjct: 73 DAYVEYSGTSLTAILKQPLDRDPARTLSTIRNIYERKFHITVAPSLGFEDTFAMIVRSDD 132
Query: 123 LGIKSYQDIAKYKKELGAKIYG-IEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
+ +++ + + G + + + +
Sbjct: 133 PRFFAVRNLTQLAPMANSLRLGTGYEFQSRADGLPALQAVYHLD-----FNDRPRVMDLG 187
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNI 241
+ R + +++ L ++ F +VR D L + P +
Sbjct: 188 LLYRSMAAKQVDIVSGNSTDGAIIAMHLRVLQD--DLHAFPPYEAVPLVRDDALREHPAL 245
Query: 242 SRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
R LK + + S + + N +D V R
Sbjct: 246 GRALKRLAGQISADEMQSLNHEVDGNHRDPAEVVRDF 282
>gi|239928203|ref|ZP_04685156.1| secreted substrate-binding protein [Streptomyces ghanaensis ATCC
14672]
gi|291436534|ref|ZP_06575924.1| secreted substrate-binding protein [Streptomyces ghanaensis ATCC
14672]
gi|291339429|gb|EFE66385.1| secreted substrate-binding protein [Streptomyces ghanaensis ATCC
14672]
Length = 318
Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats.
Identities = 40/280 (14%), Positives = 74/280 (26%), Gaps = 29/280 (10%)
Query: 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--LLAVPVTFRSLKNKGI 76
A + V + + + L G K K + + T+ +KN +
Sbjct: 43 AEEKTEAGTVVVGSNNFAESTLLADIYGEALRAK-GIKVTYKHNIGSRETTYGLMKNGSL 101
Query: 77 DIFMGYWY--------------PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
+ Y P + + L+ + K ++VN
Sbjct: 102 TVLPEYNGSLLAYLDPEAEQESPRAVNEAVEEKLDKELTLLEPSPAEDKDSVSVNAETAK 161
Query: 123 LGIKSYQDIAKYKKELGAKIY--GIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ K++ ++ G Q + + + K
Sbjct: 162 KYGLTTSSTLADLKDVAPELVIGGSPEFQTRRQGLKGLESVYGL--KFKSFKALDAGGPL 219
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+Q N + P L E + GF A+V +VR D L +
Sbjct: 220 TQ--AALAGNTVQAADIFTTDPTIVKEKFVVLKDPENLFGF--ANVTPLVRKDGLPQ--E 273
Query: 241 ISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
L + K E+ + K+D V R L
Sbjct: 274 GVDALNAVSAKLDTETLLELDAQVQLEKKDPLDVARAWLE 313
>gi|242399859|ref|YP_002995284.1| Osmoprotection protein (proX) [Thermococcus sibiricus MM 739]
gi|242266253|gb|ACS90935.1| Osmoprotection protein (proX) [Thermococcus sibiricus MM 739]
Length = 267
Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats.
Identities = 25/268 (9%), Positives = 71/268 (26%), Gaps = 27/268 (10%)
Query: 27 PVRFADTGWTDIAATTAMTSVILE-EILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYP 85
+ + + + + E Y+ + + +L+ I++++ Y
Sbjct: 2 KIVIGAKPFNEQKILAHILGKLFERAGFDYEVRVSEPRLEANLEALEKGEINVYVEYTGT 61
Query: 86 SLEKFIAPYLEEGSIKLVAENL---------------QGAKYMLAVNDVGFALGIKSYQD 130
+ + + N G + A+ S +
Sbjct: 62 AYNALLKLPPMKEWYPEKVFNAVVEGFREREIQIFARLGFRNDFALAVRKDFAKKNSLET 121
Query: 131 IAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRN 189
I+ K ++ P E + + + + + Q+
Sbjct: 122 ISDLAKISKNLVFACPGPYIERPDGLPRLKEVYDLEFREIKPLMPP------QMYEAISK 175
Query: 190 NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
V ++ N+ L + + R + +K RLL+ K
Sbjct: 176 GEVDVITAFTTDARVEVFNLKTLNDDRKAL--PPYEAILIGR-ELPEKVEEALRLLEG-K 231
Query: 250 FSVALENEMMKLILNNKQDRQFVGRTML 277
+V + E+ + + + + + +
Sbjct: 232 ITVEMMRELNRKLDFEGRKEEEIAEEFV 259
>gi|55669780|pdb|1SW1|A Chain A, Crystal Structure Of Prox From Archeoglobus Fulgidus In
Complex With Proline Betaine
gi|55669781|pdb|1SW1|B Chain B, Crystal Structure Of Prox From Archeoglobus Fulgidus In
Complex With Proline Betaine
Length = 275
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 35/277 (12%), Positives = 83/277 (29%), Gaps = 27/277 (9%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL--AVPVTFRSLKNKGIDIF 79
+ S V + + +++LEE GYK +K V + +LK I ++
Sbjct: 2 SQSSERVVIGSKPFNEQYILANXIAILLEEN-GYKAEVKEGLGGTLVNYEALKRNDIQLY 60
Query: 80 MGYWYPSLEKFIAPYLEEGSIK----------------LVAENLQGAKYMLAVNDVGFAL 123
+ Y + + E + +V G + A+
Sbjct: 61 VEYTGTAYNVILRKQPPELWDQQYIFDEVKKGLLEADGVVVAAKLGFRDDYALAVRADWA 120
Query: 124 GIKSYQDIAKYKKELGAKIYGIEP-GNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ I+ + ++G +P + + F K + E +
Sbjct: 121 EENGVEKISDLAEFADQLVFGSDPEFASRPDGLPQIKKVYGFEFKEVKQXEPTLX----- 175
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+N V ++ N+ L + +A + + +K ++
Sbjct: 176 -YEAIKNKQVDVIPAYTTDSRVDLFNLKILEDDKGALPPYDAIIIVNGNTAKDEKLISVL 234
Query: 243 RLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+LL++ + K+D + + + L+
Sbjct: 235 KLLEDR-IDTDTXRALNYQYDVEKKDAREIAXSFLKE 270
>gi|326329325|ref|ZP_08195650.1| glycine betaine/choline-binding protein of an ABC-type transport
system [Nocardioidaceae bacterium Broad-1]
gi|325952900|gb|EGD44915.1| glycine betaine/choline-binding protein of an ABC-type transport
system [Nocardioidaceae bacterium Broad-1]
Length = 308
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 32/305 (10%), Positives = 74/305 (24%), Gaps = 39/305 (12%)
Query: 5 LAVCLFLTTFSISYARDA--------DSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
L L + + D + + + M + LE G K
Sbjct: 11 LFATLAVAGTLTACGGDPLDSGSDSDSGSGTIVVGSANFPESELLMEMYAQALEAE-GVK 69
Query: 57 TNIKL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEG---------------- 98
K + V + K+ ID+ Y L + E
Sbjct: 70 VETKPNIGSREVYMEAFKSGDIDLLPEYNGALLAYLKPDGVPENVSAPEDVYEALQDVLP 129
Query: 99 -SIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILD 157
+ + ++ K L V+ + + + + G +Q ++
Sbjct: 130 EGSETLPQSEAEDKDTLTVSKETAEKYSLTSIEDLAPVAK-NLTLGGAPEFKTRHQGLIG 188
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
+ + + + V + L +
Sbjct: 189 LDEVY--GVTFKEFKPLDAGGPLTS--SALKKGDIDVANVFSTDSQIPTNGWVVLEDPKN 244
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRT 275
+ +V ++RS+ L + L + + E + + +K V +
Sbjct: 245 LFL--SQNVVPLIRSEALSD--DAETALNAVSEALTTDNLTEALAKVQVDKATPATVAKE 300
Query: 276 MLRTH 280
L +
Sbjct: 301 FLADN 305
>gi|319950146|ref|ZP_08024082.1| glycine betaine ABC transporter substrate binding lipoprotein
[Dietzia cinnamea P4]
gi|319436187|gb|EFV91371.1| glycine betaine ABC transporter substrate binding lipoprotein
[Dietzia cinnamea P4]
Length = 330
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 38/321 (11%), Positives = 84/321 (26%), Gaps = 50/321 (15%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP------------------VRFADTGWTDIAATTA 43
++ A L + + P + +T+ +
Sbjct: 10 RRLAAALLTTVLLATGCGLNNGGSVPLSVGPGPGGTVPELEGVRITVGGKDFTEGVIASY 69
Query: 44 MTSVILEEILGYKTN--IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE----- 96
+ +L G + + L ++L +DI M Y + ++
Sbjct: 70 LVEFLL-AAAGMEVSDMSSLAGSNSFRQALVTGQVDIGMEYTGTAWMSYLGNSEPIRDPQ 128
Query: 97 ------------EGSIKLVAENLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKKELGAKIY 143
E ++ + Y A+N G++++ D A+ +
Sbjct: 129 GQWEAVRDADLAEHDLRWLPPTTVDNTYSFAMNRATADETGVRTFSDYAELVRTDPQSAV 188
Query: 144 GIEPGNE--GNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI-PAVFLSWEP 200
+ F + + I + +
Sbjct: 189 TCMETEFSVRRDGWPGLAEAYGFDAATV----PTPIMQPGIIYQATSVGRECRFGEVYTT 244
Query: 201 HPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEM 258
L++ L + ++ TVVR + LD P I +L + + + EM
Sbjct: 245 DGRIKGLDLVVLQDDQRFF--PVYNLATVVRGEVLDAYPQIEDVLAPLVDLLTNEVMVEM 302
Query: 259 MKLILNNKQDRQFVGRTMLRT 279
+ + +D V R L
Sbjct: 303 NMRVDVDGEDPALVARDFLEQ 323
>gi|187929853|ref|YP_001900340.1| glycine betaine ABC transporter substrate-binding protein
[Ralstonia pickettii 12J]
gi|187726743|gb|ACD27908.1| Substrate-binding region of ABC-type glycine betaine transport
system [Ralstonia pickettii 12J]
Length = 504
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 31/292 (10%), Positives = 72/292 (24%), Gaps = 28/292 (9%)
Query: 8 CLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVT 67
+L ++ + A + P+R +T+ + + + L +
Sbjct: 2 LAWLALGWLASSASAFAEQPLRIGSKRFTESYVLGEILTQTANPRGPAEHVPGLGNTAIV 61
Query: 68 FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQ-----------------GA 110
F +L+N ID++ Y + + ++ + A L G
Sbjct: 62 FAALRNGSIDVYPDYLGTIAAEILHLPADQAANPDQAALLADVNRGLAPMGLAAGVPLGF 121
Query: 111 KYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
+ A+ + + +A ++ ++ K
Sbjct: 122 EDAYALAMREADAEREHIRTLADLATHPTLRLGLSHEFLGRADGWPAIVQRYKLPQPPTG 181
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
L R + V + ++ L F +
Sbjct: 182 LDHGV-------AYDALRASQVDVIDIYSTDAKIRREHLRVLDDP--AHVFPRYDAVLLY 232
Query: 231 RSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
R+D + P + + + M + Q R L H
Sbjct: 233 RADVAQRHPAQWQAINTLAGHIQRDDMVAMNAAVELEGQSFSQAARRFLAGH 284
>gi|54025219|ref|YP_119461.1| putative transporter permease [Nocardia farcinica IFM 10152]
gi|54016727|dbj|BAD58097.1| putative transporter permease [Nocardia farcinica IFM 10152]
Length = 327
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 30/285 (10%), Positives = 65/285 (22%), Gaps = 27/285 (9%)
Query: 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLK--NKGI 76
+ + +T+ +T+ L G A N
Sbjct: 41 GARPLAGAELVVTSKSFTEGVLLGKITATYL-AAAGADVVDMTGAPGSASSRQAQLNGDA 99
Query: 77 DIFMGYWYPSLEKFIAP-----------------YLEEGSIKLVAENLQGAKYMLAVNDV 119
D+ Y + E ++ + Y +
Sbjct: 100 DVLWEYTGTGWVNYHNRTETISDPQELWRQVHDIEKSEYDLEWLPPANFNDTYAFGASRA 159
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK--FSLKGFRLIEASEL 177
+ + L M+ ++ +
Sbjct: 160 TAERLGVRSLSDVAALPVADRTFCVDDEFFSRSDGFLPMLQTYGIPYNDPAGVPVANVTR 219
Query: 178 ASFSQIRRDQRNNIP-AVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
+ P + + +L++ L ++ S VVR+ L+
Sbjct: 220 MDAGVVYTATAKGAPCHFGMIYTTDGRVKNLDLVVLDDDKKFFL--PYSGTAVVRAAVLE 277
Query: 237 KCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+ P + LL I + L E+ + + +D V LR
Sbjct: 278 RHPELRTLLGTISERLTDDLMQELNGRVDIDGEDPADVAYDWLRQ 322
>gi|226360304|ref|YP_002778082.1| ABC transporter substrate-binding protein [Rhodococcus opacus B4]
gi|226238789|dbj|BAH49137.1| putative ABC transporter substrate-binding protein [Rhodococcus
opacus B4]
Length = 327
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 31/279 (11%), Positives = 67/279 (24%), Gaps = 32/279 (11%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPVTFRSLKNKGIDIFMG 81
+ +T+ + L G + T + + ID+
Sbjct: 47 EGVAITVGSKDFTEQVTLGYIIEFALSAA-GADVRDLTNIQGSNSTRDAQLDGQIDVTYE 105
Query: 82 YWYPSLEKFI-----------------APYLEEGSIKLVAENLQGAKYMLAVNDVGFAL- 123
Y ++ LE + V Y LA++
Sbjct: 106 YTGTGWINYLGNEIPIPDPTAQFEAVRDEDLERNGMVWVDPAPMNNTYALAMSRQTAEET 165
Query: 124 GIKSYQDIAKYKKELGAKIYGI--EPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
GI + + A A N M F
Sbjct: 166 GITTLSEYADLVNRDPAAATTCVETEFNVRQDGFPGMAAKYGFDPARANRQILQTGI--- 222
Query: 182 QIRRDQRNN-IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
I + + + L++ L + + + +R D+ + P
Sbjct: 223 -IYQATADGTQCKFGEVFTTDGRIIALDLVLLEDDRQFF--PKYNPAITMRKDFAEAHPQ 279
Query: 241 ISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
++ ++ I + E+ + + ++ V R L
Sbjct: 280 VAEVMAPISAALTNEEITELNRRVDVEGEEPADVARDWL 318
>gi|239941605|ref|ZP_04693542.1| putative ABC transporter solute-binding protein [Streptomyces
roseosporus NRRL 15998]
gi|239988070|ref|ZP_04708734.1| putative ABC transporter solute-binding protein [Streptomyces
roseosporus NRRL 11379]
gi|291445049|ref|ZP_06584439.1| ABC transporter substrate-binding protein [Streptomyces roseosporus
NRRL 15998]
gi|291347996|gb|EFE74900.1| ABC transporter substrate-binding protein [Streptomyces roseosporus
NRRL 15998]
Length = 321
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 30/288 (10%), Positives = 74/288 (25%), Gaps = 29/288 (10%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLK 72
+ + +++ MT ++ + G + L ++
Sbjct: 33 GSVGQGEPLKGATLTVTSKNFSENIILGQMTGLVFKAA-GAEVLDRTNLPGSISAREAII 91
Query: 73 NKGIDIFMGYWYPSLEKFI----------------APYLEEGSIKLVAENLQGAKYMLAV 116
N D Y F+ + + + Y LA+
Sbjct: 92 NGDADAQWDYTGTGWITFLGHADPIVDPKKQYEAVRDEDKGNGVIWLPPAPLDNTYALAI 151
Query: 117 NDV---GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+ + L S + I + + M + + +
Sbjct: 152 SKKNNAKYKLKTLSDAAALAKRDPGAVTICVENEFASRDDGLPGMEKKYGMKIPAGNIQK 211
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
++Q+ +N + + +++ L + F + VV
Sbjct: 212 MDAGIIYTQVS---ESNSCLLGEVYTTDGRIKAMDLDLLED--DKHFFPNYNASPVVHEA 266
Query: 234 YLDKCPNISRLLK--NIKFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+K P I+ LL K + + + + + +D V + L
Sbjct: 267 TFEKYPVIAELLDPLARKLTTEVAQTLNAKVDVDGEDPHEVAKEWLVE 314
>gi|115359061|ref|YP_776199.1| glycine betaine transporter periplasmic subunit [Burkholderia
ambifaria AMMD]
gi|115284349|gb|ABI89865.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia ambifaria AMMD]
Length = 342
Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 38/344 (11%), Positives = 91/344 (26%), Gaps = 59/344 (17%)
Query: 1 MYKI---LAVCLFLTTFSISYARDAD----SCTPVRFAD-----TGWTDIAATTAMTSVI 48
M K+ LA + T A A + + +A + + TT
Sbjct: 1 MNKLKPALAALACVATLVTGGAASAADLPGAGKTINYAQTDGLGANYVSVQITTKALK-- 58
Query: 49 LEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQ 108
+GY +K + + F+++ +D+ +P + + +
Sbjct: 59 ---AMGYDVKLKTMGTVLFFQAVAQGDVDLETDVNFPQSDPNFRAVQDRAVQVGRGQIDG 115
Query: 109 GAKYMLAVNDVGFALGIKSYQDIAKYKK-------ELGAKIYGIEPGNEGNQRILDMINN 161
G ++ + + K K + A++ +PG + ++
Sbjct: 116 GGINGYLIDRKTALAHNITSLEQMKDPKIAALFGNDGKAQLISCDPGWSCGDVVNYQLDK 175
Query: 162 NKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP----INSDLNIHYLPGGEE 217
+ + A + + + PA F +W P + ++ +LP +
Sbjct: 176 FGLRQT-VKPVTGKYEALMADVVSRIKGGEPAFFYAWSPSWTTSELVPGKDVVWLPTPAD 234
Query: 218 I---------------------------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKF 250
+ V D++ + L++ I F
Sbjct: 235 ALPPNVPNAGSALVKDVPGCAGGANPCRMAMASWNYSAVANKDFIAANAPVRALVEQIHF 294
Query: 251 SVALENEMMKLILNNKQDRQFV---GRTMLRTHPDLLKNWLIGV 291
+ + I V + + W+
Sbjct: 295 PSSTWSNWELAISQAHGSSAIVTTLADQWIAANKATFDRWVAAA 338
>gi|78045723|ref|YP_361898.1| ABC transporter permease and substrate-binding protein [Xanthomonas
campestris pv. vesicatoria str. 85-10]
gi|78034153|emb|CAJ21798.1| ABC transporter permease and substrate-binding protein [Xanthomonas
campestris pv. vesicatoria str. 85-10]
Length = 490
Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 32/289 (11%), Positives = 73/289 (25%), Gaps = 28/289 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI- 59
M + L ++L + A V +T+ + + + G
Sbjct: 2 MARALIAVVWLICSVSAQAAQ------VTIGSKNFTEAVILGEIATAAGKRD-GVDVQHR 54
Query: 60 -KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA--------ENLQGA 110
+L + +R+L+ ID + Y ++ + + A + G
Sbjct: 55 AQLGGTRILWRALETGQIDAYAEYTGTLAQELLQLPNASQAELRAALDARGLAMTDSLGF 114
Query: 111 KYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
+ A ++ + KI + +
Sbjct: 115 QNTYAFGMKRERAQALGIASLSDLARHPSLKIGLSNEFMQRADGWPGVRAAYALPQAATG 174
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
L R ++ V + + L + F + V
Sbjct: 175 LDHD-------LAYRALQSGAIEVTDLYSTDAEIPYYQLQVLRD--DRHYFPDYQAIFVY 225
Query: 231 RSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
R D + P + + L+ ++ A + + +Q V L
Sbjct: 226 RKDLAHRSPAMLQALRGLQGRIDEATMQRLNAQVKLERQSEAAVAARWL 274
>gi|169628321|ref|YP_001701970.1| putative ABC transporter [Mycobacterium abscessus ATCC 19977]
gi|169240288|emb|CAM61316.1| Putative ABC transporter [Mycobacterium abscessus]
Length = 313
Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 25/270 (9%), Positives = 65/270 (24%), Gaps = 26/270 (9%)
Query: 28 VRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPVTFRSLKNKGIDIFMGYWYP 85
+ A +T+ + ++IL G +S+ + ++ Y
Sbjct: 42 ITVAAKDFTEQLVLGNIVAIILNAA-GASVTNMTNTPGSFGVRQSMLKRVANVSPEYTGT 100
Query: 86 SLEKFI----------------APYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQ 129
++ + + Y A+ + +
Sbjct: 101 GWINYLGHADPIKDPVAQWKAVNEEDAANRLVWLPPAPMNNTYAFAIRESEAERLAVTKL 160
Query: 130 DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRN 189
+ N + M+ S I ++ +
Sbjct: 161 SDLRGLARNDLTFCVESEFASRNDGFVPMLKTYGLSTGQLGRITNLDVGV---VYTATAK 217
Query: 190 NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI- 248
+ L + L + F ++ V+ +D L P +S + +
Sbjct: 218 GDCNFGEVFTTDGRIPALKLRVLQD--DRHFFPLYNLTEVIDADLLAAHPELSEIFALLN 275
Query: 249 -KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ + + + + +D V R L
Sbjct: 276 PRLTNDTMLALNARVDSAGEDPAIVARDWL 305
>gi|264677528|ref|YP_003277434.1| Twin-arginine translocation pathway signal [Comamonas testosteroni
CNB-2]
gi|262208040|gb|ACY32138.1| Twin-arginine translocation pathway signal [Comamonas testosteroni
CNB-2]
Length = 356
Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 33/303 (10%), Positives = 85/303 (28%), Gaps = 36/303 (11%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRSLKNKGIDI 78
V + + T + L++ LGY + L P+ ++ N
Sbjct: 46 ALPGKGITVLPVKSALAEENFQTLLVMKALQQ-LGYTVKPWEELDYPLIHVAVANGDASF 104
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKS---------YQ 129
+W P +F + + GA ++ +
Sbjct: 105 MANHWNPHHAEFYQQAGGDAKLSRKGVYAAGAAQGYMIDKKTADEHKITHLDQLKDPGLA 164
Query: 130 DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRN 189
+ + A + G G G + I + + A + +
Sbjct: 165 ALFDIDGDGKANLIGPNAGWGGEAVVAHQIKAFGLE-STVSYTQGNYPALIADTLARFKA 223
Query: 190 NIPAVFLSWEPHPINSDLNIHYLPGGEEI---------------------SGFGEASVYT 228
P ++ +W P+ +++ L ++ GF + Y
Sbjct: 224 GKPVLYYAWTPYWLSNVLRPGQEVVWLQVPRSSMPGVQAGTDTRLPNGRNYGFPLNNEYI 283
Query: 229 VVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV---GRTMLRTHPDLLK 285
V ++++ P +L + ++ ++ + +L+ + + ++ H
Sbjct: 284 VANKLWVEQNPAAGKLFEIMQIPISDISRQNQLLREGESKPADIHRHVDAWIKGHQKTFD 343
Query: 286 NWL 288
W+
Sbjct: 344 AWI 346
>gi|300782034|ref|YP_003762325.1| glycine/betaine ABC transporter periplasmic protein [Amycolatopsis
mediterranei U32]
gi|299791548|gb|ADJ41923.1| periplasmic substrate-binding component of ABC-type glycine betaine
transport system [Amycolatopsis mediterranei U32]
Length = 319
Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 41/318 (12%), Positives = 89/318 (27%), Gaps = 49/318 (15%)
Query: 1 MYKILAVCLFLTTFSISYAR-----------------DADSCTPVRFADTGWTDIAATTA 43
+ ++ AV L T S A V +T+
Sbjct: 3 LRRLFAVALLGVTLSSCGLTVNQAVPYDIKPGSIQPIPALQGVKVTVGSKDFTENIILAY 62
Query: 44 MTSVILEEILGYKTNIKLLA-VPVTFRSLKNKGIDIFMGYWYPSLEKFI----------- 91
MT + L ++ + + ++L + D+ Y +
Sbjct: 63 MTEMALTAAGAEVVDLSDIKGSNSSRQALLSGQTDVTWEYTGTGWINYQGNELPVPGGEK 122
Query: 92 -------APYLEEGSIKLVAENLQGAKYMLAVND-VGFALGIKSYQDIAKYKKELGAKIY 143
E+ + + + +Y AV + G A +K+ D+A + K+ +
Sbjct: 123 AQYEATAKADEEKFGVTWLNYSPLNDQYAFAVTEAYGAANNLKTTSDLAAFIKQKPDQAV 182
Query: 144 GIEP--GNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPH 201
+ F + I + V +
Sbjct: 183 FCLETEFTSRQDGFPAAVKAYGF------QNPTVKNFGIGTIYSAVASGTCPVGEVFTTD 236
Query: 202 PINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMM 259
S LN+ L ++ + + +R+++L++ P + L+ I E+
Sbjct: 237 GRISGLNLRVLEDDKKAF--PQYNAVATLRTEWLNQHPEVRGPLEKISAAIDNEQMVELC 294
Query: 260 KLILNNKQDRQFVGRTML 277
K + + QD V +
Sbjct: 295 KQVDVDGQDAGKVAHDWM 312
>gi|167551118|ref|ZP_02344873.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Saintpaul
str. SARA29]
gi|205323995|gb|EDZ11834.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Saintpaul
str. SARA29]
Length = 305
Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 47/314 (14%), Positives = 87/314 (27%), Gaps = 36/314 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--N 58
+ K+ L L + A PV T+ A M +LE G KT
Sbjct: 3 ISKLWVSLLALLATVSLPLQAAS---PVTVGSKIDTEGALLGNMILQVLESH-GVKTVNK 58
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEG------------------SI 100
I+L PV ++ +DI+ Y F +
Sbjct: 59 IQLGTTPVVRGAITAGELDIYPEYTGNGAFFFKDENDPAWKNAKQGFEKVKKLDAEQNKL 118
Query: 101 KLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDM 158
+ + +AV S + K+ E +
Sbjct: 119 VWLTPAPANNTWTIAVRQDIAEKNKLSSLADLSRYLKEGGTFKLAASAEFIERADALPAF 178
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEE 217
F+L +L+ + + I+ + + +++ + L + L +
Sbjct: 179 EKAYDFTLNQNQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPKG 238
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
+ + VVR L P I+ L+ + ++ I D + V
Sbjct: 239 V--QPIYAPAPVVRESVLQAYPQIADWLQPVFASLDEKTLQQLNARIAVEGLDAKKVAAD 296
Query: 276 MLRTHPDLLKNWLI 289
LR K W+
Sbjct: 297 YLRQ-----KGWVK 305
>gi|205353303|ref|YP_002227104.1| periplasmic protein [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|205273084|emb|CAR38037.1| putative periplasmic protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|326628392|gb|EGE34735.1| putative periplasmic protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9]
Length = 305
Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 47/314 (14%), Positives = 87/314 (27%), Gaps = 36/314 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--N 58
+ K+ L L + A PV T+ A M +LE G KT
Sbjct: 3 ISKLWVSSLALLATVSLPLQAAS---PVTVGSKIDTEGALLGNMILQVLESH-GVKTVNK 58
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------I 100
I+L PV ++ +DI+ Y F +
Sbjct: 59 IQLGTTPVVRGAITAGELDIYPEYTGNGAFFFKDENDPAWKNAKQGFEKVKKLDAEQNKL 118
Query: 101 KLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDM 158
+ + +AV S + K+ E +
Sbjct: 119 VWLTPAPANNTWTIAVRQDIAEKNKLSSLADLSRYLKEGGTFKLAASAEFIERADALPAF 178
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEE 217
F+L +L+ + + I+ + + +++ + L + L +
Sbjct: 179 EKAYDFTLNQNQLLSLAGGDTAVTIKAAAQQTSGVNAVMAYGTDGPVAALGLQTLSDPKG 238
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
+ + VVR L P I+ L+ + ++ I D + V
Sbjct: 239 V--QPIYAPAPVVRESVLQAYPQIADWLQPVFASLDEKTLQQLNARIAVEGLDAKKVAAD 296
Query: 276 MLRTHPDLLKNWLI 289
LR K W+
Sbjct: 297 YLRQ-----KGWVK 305
>gi|293397087|ref|ZP_06641361.1| ABC superfamily ATP binding cassette transporter, binding protein
[Serratia odorifera DSM 4582]
gi|291420558|gb|EFE93813.1| ABC superfamily ATP binding cassette transporter, binding protein
[Serratia odorifera DSM 4582]
Length = 310
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 50/302 (16%), Positives = 99/302 (32%), Gaps = 31/302 (10%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
+ LA+ L + T + A+ ADS VR T+ + + +LE G KT ++
Sbjct: 9 RFLALALGIVTLATGTAQAADS---VRVGSKIDTEGSLLGNIIVQVLEAN-GIKTTNKLQ 64
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEG------------------SIKL 102
L V ++ IDI+ Y F +
Sbjct: 65 LGTTKVLRGAIVAGEIDIYPEYTGNGAFFFADEKDPAWKDAKAGFDKVKTLDYDKNKLVW 124
Query: 103 VAENLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKK-ELGAKIYGIEPGNEGNQRILDMIN 160
+ + +AV +K+ D+ K+ K+ E + N
Sbjct: 125 LDAAPANNTWTIAVRQDVADANHLKTLADLGKWINGGGKFKLAASAEFIERPDALPAFQN 184
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F+L +L+ + + I+ + +++ + L + L + +
Sbjct: 185 AYGFTLNQDQLLSLAGGDTAVTIKAAAEQTSGVNAAMAYGTDGPVAALGLQTLEDPQGV- 243
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ V+R L + NI++LLK + ++ I QD + V + L
Sbjct: 244 -QPIYAPAPVIREATLKQHANIAQLLKPVFATLDGPTLQQLNAQIAVEGQDAKQVAASYL 302
Query: 278 RT 279
+
Sbjct: 303 KQ 304
>gi|168702980|ref|ZP_02735257.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Gemmata obscuriglobus UQM
2246]
Length = 503
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 33/291 (11%), Positives = 70/291 (24%), Gaps = 25/291 (8%)
Query: 1 MYKILAVCLFLTTFSISY---ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M + L + + + PV +T+ M + + G +
Sbjct: 1 MTRQLPAFVCAALAATVALVPGCSPAAQRPVVIGSKKFTESVILAEMGTQLARAG-GAEA 59
Query: 58 NI-KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIA-------PYLEEGSIKLVAENLQG 109
L P + +L ID + Y + + L +++
Sbjct: 60 RRDDLGGTPALWLALTQGDIDAYPEYTGTITRQILKDDPPDLAAALAAQGVRISKPLGFR 119
Query: 110 AKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
Y L + A + EL I + + +
Sbjct: 120 NNYALGMRKDVAAAKGVRSISYLRQHPELRCGF--IHEFLDRPDGWPGVKRHYDLPQTDV 177
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV 229
+ + R V + + ++ L +
Sbjct: 178 ------RGMNHTLAYRALVERAIDVTEVYTTDGEIAQYDLLVLDDDRNFF--PAYEAVWL 229
Query: 230 VRSDYLDKCPNISRLLKNI--KFSVALENEMMKLIL-NNKQDRQFVGRTML 277
R+D + P L+ + + + M L K+D + V L
Sbjct: 230 YRADLESRHPKAVEQLRRLEGRVTEPQMQRMNSLAQGEQKKDEREVAGEFL 280
>gi|323528699|ref|YP_004230851.1| glycine betaine ABC transporter substrate-binding protein
[Burkholderia sp. CCGE1001]
gi|323385701|gb|ADX57791.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia sp. CCGE1001]
Length = 342
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 42/327 (12%), Positives = 94/327 (28%), Gaps = 45/327 (13%)
Query: 5 LAVCLFLTTFSISYARD-ADSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNIKLL 62
LA+ + L A++ V++A + T + ++ LGY + +
Sbjct: 11 LALVITLMVSGPVSAQNMPGKGKTVKYAQGDSFGGNYVATQIIVQAMK-NLGYDVKLATM 69
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
+ F+++ D+ +P E ++ + G ++
Sbjct: 70 NTTLFFQAVAQGDEDLATDINFPQREPGFRAVEKQAQVIGSGLIAGGGINGYLIDKKTAD 129
Query: 123 LGIKSYQDIAKYKK-------ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
+ K K + A++ +PG + +N R +
Sbjct: 130 QYKITSLAQLKDPKIAGLFGADGKAELISCDPGWSCGDVVDYQLNKFGL-KNNVRAVRGK 188
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEEI------------- 218
R PA F +W P + ++ +LP E+
Sbjct: 189 YETLMVDAIAKVRAGKPAFFYAWSPSWTVNSVVPGKDVVWLPTPEDALPPNVPNKGSALV 248
Query: 219 --------------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILN 264
+ V +++ P + L++ IKF + + I
Sbjct: 249 PGVKGCAGDADPCRMAMASWNWGAVGNREFVAANPAVRALIEQIKFPQSQWSAWEYAISK 308
Query: 265 NKQDRQFVGR---TMLRTHPDLLKNWL 288
N + V + + + +L W+
Sbjct: 309 NGGSQALVAKLANDWISGNKAVLDQWV 335
>gi|315653603|ref|ZP_07906523.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Lactobacillus iners ATCC 55195]
gi|315488965|gb|EFU78607.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Lactobacillus iners ATCC 55195]
Length = 502
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 33/307 (10%), Positives = 88/307 (28%), Gaps = 36/307 (11%)
Query: 1 MYKILAVCLFLTTFSISY------ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
M+ I+ + + + ++ + A + M ++LE+
Sbjct: 204 MFLIIVLLFGIVSLGAYSLNNIKTVANSAKSEQIIIASKDDSQFDIIANMYKILLEKNKK 263
Query: 55 YKTNIKLLAVP-VTFRSLKNKGIDIFMG----------------YWYPSLEKFIAPYLEE 97
Y + L++ IDI+ L ++ L +
Sbjct: 264 YHVTFSRRKDDRQILKELRSGNIDIYPEETRKVFSLIDNSDKKFANIDELYRYTRDILYK 323
Query: 98 GSIKLVAEN-LQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
+ + ++A + I D+ KYK +L ++ + +
Sbjct: 324 QDLIYMTPMAYHNNYVLIADKEFAKQNKITKISDLQKYKSKLVVGMF--KDFAYSSNGYE 381
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ + K + A Q R + + P N+ L
Sbjct: 382 GLKDVYKLDFPKMSVTTAD------QCYEKLRKRQVNLIAATSNDPEIKKNNLLILND-- 433
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F V ++ + K + ++++ + K + ++ + ++ V +
Sbjct: 434 DKYYFVPYQVAPIITKRFAKKHHQVVKIIEKLAGKITDDEMIQLETRVKLEHKNAAKVAK 493
Query: 275 TMLRTHP 281
L+ +
Sbjct: 494 AFLQRNK 500
>gi|119963764|ref|YP_946452.1| glycine/betaine ABC transporter substrate binding protein
[Arthrobacter aurescens TC1]
gi|119950623|gb|ABM09534.1| putative substrate binding domain of a glycine/betaine ABC
transport system [Arthrobacter aurescens TC1]
Length = 311
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 28/313 (8%), Positives = 71/313 (22%), Gaps = 42/313 (13%)
Query: 1 MYK---ILAVCLFLTTFSISYARDAD------------SCTPVRFADTGWTDIAATTAMT 45
M K L S++ + F +++ + +T
Sbjct: 1 MKKPAMTLLATGVAVALSLTACGGSASSTSSGAGSNELEGLTGVFGAKDFSEQFILSHIT 60
Query: 46 SVILE-EILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKF-------------- 90
S +L TN ++ + + + Y S +
Sbjct: 61 SQVLNAHGADTTTNTSVVGSANVRTAFETGQFAGYWEYTGTSWITYNKQTTPIKDKTEMF 120
Query: 91 --IAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPG 148
+ + I + Y AV +
Sbjct: 121 KAVKDADAKKGIAWLDPAPLNNTYAFAVREDKAKELGIKSLSDVAKLPASEQTFCVESEF 180
Query: 149 NEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI-PAVFLSWEPHPINSDL 207
+ + + + I + +E L
Sbjct: 181 STRDDGWPGLRKEYGL-----SPDAKVSMLDTGVIYTATQKGQDCNFGEVFETDGRIPAL 235
Query: 208 NIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNN 265
+ + + V++D L K P I+ ++ + K + + ++ +
Sbjct: 236 KLQVMEDDKNFF--PIYQGALTVKADILAKYPAITDIMAKVSPKLTTEVMQQLNAKADVD 293
Query: 266 KQDRQFVGRTMLR 278
+D + + + L
Sbjct: 294 GEDPEDIAKEWLE 306
>gi|16761108|ref|NP_456725.1| periplasmic protein [Salmonella enterica subsp. enterica serovar
Typhi str. CT18]
gi|29141196|ref|NP_804538.1| periplasmic protein [Salmonella enterica subsp. enterica serovar
Typhi str. Ty2]
gi|213161338|ref|ZP_03347048.1| putative periplasmic protein [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
gi|213428233|ref|ZP_03360983.1| putative periplasmic protein [Salmonella enterica subsp. enterica
serovar Typhi str. E02-1180]
gi|213611239|ref|ZP_03370065.1| putative periplasmic protein [Salmonella enterica subsp. enterica
serovar Typhi str. E98-2068]
gi|213650029|ref|ZP_03380082.1| putative periplasmic protein [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
gi|213852438|ref|ZP_03381970.1| putative periplasmic protein [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
gi|289824262|ref|ZP_06543857.1| putative periplasmic protein [Salmonella enterica subsp. enterica
serovar Typhi str. E98-3139]
gi|25366787|pir||AC0778 probable periplasmic protein STY2395 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16503406|emb|CAD02545.1| putative periplasmic protein [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29136822|gb|AAO68387.1| putative periplasmic protein [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
Length = 305
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 46/314 (14%), Positives = 88/314 (28%), Gaps = 36/314 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--N 58
+ K+ L L + A PV T+ A M +LE G KT
Sbjct: 3 ISKLWVSSLALLATVSLPLQAAS---PVTVGSKIDTEGALLGNMILQVLESH-GVKTVNK 58
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------I 100
I+L PV ++ +DI+ Y F +
Sbjct: 59 IQLGTTPVVRGAITAGELDIYPEYTGNGAFFFKDENDPAWKNAKQGFEKVKKLDAEQNKL 118
Query: 101 KLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDM 158
+ + +A+ S + K+ E + +
Sbjct: 119 VWLTPAPANNTWTIAIRQDIAEKNKLSSLADLSRYLKEGGTFKLAASAEFIERSDALPAF 178
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEE 217
F+L +L+ + + I+ + + +++ + L + L +
Sbjct: 179 EKAYDFTLNQNQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPKG 238
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
+ + VVR L P I+ L+ + ++ I D + V
Sbjct: 239 V--QPIYAPAPVVRESVLQAYPQIADWLQPVFASLDEKTLQQLNARIAVEGLDAKKVAAD 296
Query: 276 MLRTHPDLLKNWLI 289
LR K W+
Sbjct: 297 YLRQ-----KGWVK 305
>gi|298294110|ref|YP_003696049.1| substrate-binding region of ABC-type glycine betaine transporter
[Starkeya novella DSM 506]
gi|296930621|gb|ADH91430.1| Substrate-binding region of ABC-type glycine betaine transport
system [Starkeya novella DSM 506]
Length = 307
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 41/300 (13%), Positives = 86/300 (28%), Gaps = 25/300 (8%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEE-ILGYKTNI 59
+ ++LA + A + V A T+ A + +++LE+ L K +
Sbjct: 3 IRRLLASVALAAGLGLGAPGAAMAADSVTVASKIDTEGAVLGNIIALLLEQNGLHVKERL 62
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYP-----------------SLEKFIAPYLEEGSIKL 102
L + +L IDI+ Y + +
Sbjct: 63 SLGPTKIVRTALLEGEIDIYPEYTGNAGFFFNVDGDPAWKKADTAYAKAKELDAANKLVW 122
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL--GAKIYGIEPGNEGNQRILDMIN 160
+ + +AV + D K+ G E +
Sbjct: 123 LQPAPANNTWAIAVRGDVAKKNKLATLDDFGKWVASGGEVKLAGSAEFVESAAALPAFQE 182
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQR-NNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ S + + I+ + + + + L++ L + +
Sbjct: 183 AYGFKLGQGQLLVLSGGDTAATIKAAAEGTSGVNAAMVYGTDGGIAALDLKVLDDTKGV- 241
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKN--IKFSVALENEMMKLILNNKQDRQFVGRTML 277
VVR+ L+ P I+ +L + + + QD + V + L
Sbjct: 242 -QAVYQPAPVVRAAVLEAHPEIATILAPAFAALDLETLQGLNAKVQIEGQDARTVAKDWL 300
>gi|325927457|ref|ZP_08188701.1| periplasmic glycine betaine/choline-binding lipoprotein
[Xanthomonas perforans 91-118]
gi|325542158|gb|EGD13656.1| periplasmic glycine betaine/choline-binding lipoprotein
[Xanthomonas perforans 91-118]
Length = 406
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 32/289 (11%), Positives = 73/289 (25%), Gaps = 28/289 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI- 59
M + L ++L + A V +T+ + + + G
Sbjct: 2 MARALIAVVWLICSVSAQAAQ------VTIGSKNFTEAVILGEIATAAGKRD-GVDVQHR 54
Query: 60 -KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA--------ENLQGA 110
+L + +R+L+ ID + Y ++ + + A + G
Sbjct: 55 AQLGGTRILWRALETGQIDAYAEYTGTLAQELLQLPNASQAELRAALDARGLAMTDSLGF 114
Query: 111 KYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
+ A ++ + KI + +
Sbjct: 115 QNTYAFGMKRERAQALGIASLSDLARHPTLKIGLSNEFMQRADGWPGVRAAYALPQAATG 174
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
L R ++ V + + L + F + V
Sbjct: 175 LDHD-------LAYRALQSGAIEVTDLYSTDAEIPYYQLQVLRD--DRHYFPDYQAIFVY 225
Query: 231 RSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
R D + P + + L+ ++ A + + +Q V L
Sbjct: 226 RKDLAHRSPAMLQALRGVQGRIDEATMQRLNAQVKLERQSEAAVAARWL 274
>gi|308186153|ref|YP_003930284.1| ABC transporter, substrate-binding periplasmic protein precursor
[Pantoea vagans C9-1]
gi|308056663|gb|ADO08835.1| putative ABC transporter, substrate-binding periplasmic protein
precursor [Pantoea vagans C9-1]
Length = 303
Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats.
Identities = 44/304 (14%), Positives = 84/304 (27%), Gaps = 30/304 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--N 58
M +I T A PVR T+ + + +LE+ G KT
Sbjct: 1 MVRIRGWVGVSTLLLSMGMAQAA--DPVRVGSKIDTEGSLLGNVILQVLEKH-GVKTVNK 57
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------I 100
I+L V ++ +DI+ Y F +
Sbjct: 58 IQLGTTQVVRGAITAGELDIYPEYTGNGAFFFNDEKDSAWKNAAAGYEKVKKLDAEKNHL 117
Query: 101 KLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDM 158
+ + +AV + K K+ E + +
Sbjct: 118 VWLTPAPANNTWTIAVRKDLAEKNQLTSLADLSAFLKKGGTFKLAASAEFIERSDALPAF 177
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEE 217
F LK +L+ + + I + + +++ + L + L +
Sbjct: 178 EKAYGFDLKQDQLLSLAGGDTAVTISAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPKG 237
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
+ + V+R L P I+ LK + ++ I + QD V
Sbjct: 238 V--QPIYAPTPVMRESVLKAYPQIADWLKPVFSALDEKTLQQLNAKIAVDGQDASSVATE 295
Query: 276 MLRT 279
L+
Sbjct: 296 WLQQ 299
>gi|200388447|ref|ZP_03215059.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Virchow
str. SL491]
gi|199605545|gb|EDZ04090.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Virchow
str. SL491]
Length = 305
Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats.
Identities = 47/314 (14%), Positives = 87/314 (27%), Gaps = 36/314 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--N 58
+ K+ L L + A PV T+ A M +LE G KT
Sbjct: 3 ISKLWVSSLALLATVSLPLQAAS---PVTVGSKIDTEGALLGNMILQVLENH-GVKTVNK 58
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------I 100
I+L PV ++ +DI+ Y F +
Sbjct: 59 IQLGTTPVVRGAITAGELDIYPEYTGNGAFFFKDENDPAWKNAKQGFEKVKKLDAEQNKL 118
Query: 101 KLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDM 158
+ + +AV S + K+ E +
Sbjct: 119 VWLTPAPANNTWTIAVRQDIAEKNKLSSLADLSRYLKEGGTFKLAASAEFIERADALPAF 178
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEE 217
F+L +L+ + + I+ + + +++ + L + L +
Sbjct: 179 EKAYDFTLNQNQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPKG 238
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
+ + VVR L P I+ L+ + ++ I D + V
Sbjct: 239 V--QPIYAPAPVVRESVLQAYPQIADWLQPVFASLDEKTLQQLNARIAVEGLDAKKVAAD 296
Query: 276 MLRTHPDLLKNWLI 289
LR K W+
Sbjct: 297 YLRQ-----KGWVK 305
>gi|295397622|ref|ZP_06807697.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Aerococcus viridans ATCC
11563]
gi|294974085|gb|EFG49837.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Aerococcus viridans ATCC
11563]
Length = 327
Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats.
Identities = 28/308 (9%), Positives = 84/308 (27%), Gaps = 37/308 (12%)
Query: 1 MYKI-LAVCLFLTTFSISYARDADSCTP----VRFADTGWTDIAATTAMTSVILEEILGY 55
M + ++ L+T ++ + T+ + +++ +
Sbjct: 7 MKYLKTSIVAVLSTIILTACSLPGLGGSSENGISIVSGSTTERQILGHIVEGMVQHYIDA 66
Query: 56 KTNIKL--LAVPVTFRSLKNKGIDIFMGYWYPSL-----------------EKFIAPYLE 96
TNI + + ++L+ ++ + + E I+ +
Sbjct: 67 PTNIIPNLGSSTMNHQALETGNANVSAVNYTGTSLTGELGMEAETDPEVALETVISEFDS 126
Query: 97 EGSIKLV--AENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQR 154
+ + + + G+++ D+ +Y E G++ +
Sbjct: 127 QYDMHWYTPGYGFANTYAFMVRREDAEEYGLETVSDLEEYADEFS---VGVDNTWLNREG 183
Query: 155 ILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPG 214
+ + L + + + V L + ++ L
Sbjct: 184 DGYNAFKEIYGFEFSELYPMT----IGLVYSAVSSGEVDVVLGYSTDGRIISEDLVVLED 239
Query: 215 GEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFV 272
+ F VV ++ ++ P + + + + S E+ + Q V
Sbjct: 240 --DKRLFPPYDGAAVVTNEAREQYPELDGIFQKLASTISDETMQELNFQSDQYLLEPQVV 297
Query: 273 GRTMLRTH 280
L +
Sbjct: 298 AERFLEEN 305
>gi|304395787|ref|ZP_07377670.1| Substrate-binding region of ABC-type glycine betaine transport
system [Pantoea sp. aB]
gi|304357081|gb|EFM21445.1| Substrate-binding region of ABC-type glycine betaine transport
system [Pantoea sp. aB]
Length = 303
Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats.
Identities = 43/300 (14%), Positives = 87/300 (29%), Gaps = 33/300 (11%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLL 62
+ V L + +++A D VR T+ + + +LE+ G KT I+L
Sbjct: 8 MGVSALLLSMGMAHAADP-----VRVGSKIDTEGSLLGNVILQVLEKH-GVKTVNKIQLG 61
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKLVA 104
V ++ +DI+ Y F + +
Sbjct: 62 TTQVVRGAITAGELDIYPEYTGNGAFFFNDEKDSAWKNAGAGYEKVKKLDAEKNHLVWLT 121
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMINNN 162
+ +AV + K K+ E + +
Sbjct: 122 PAPANNTWTIAVRKDLAEKNQLTSLADLSAFLKKGGTFKLAASAEFIERSDALPAFEKAY 181
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
F LK +L+ + + I + + +++ + L + L + +
Sbjct: 182 GFDLKQDQLLSLAGGDTAVTISAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPKGV--Q 239
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+ V+R L P I+ LK + ++ I + QD V L+
Sbjct: 240 PIYAPTPVIRESVLKAYPQIADWLKPVFSALDEKTLQQLNAKIAVDGQDASSVATEWLQQ 299
>gi|257054150|ref|YP_003131982.1| periplasmic glycine betaine/choline-binding (lipo)protein of an
ABC-type transport system (osmoprotectant binding
protein) [Saccharomonospora viridis DSM 43017]
gi|256584022|gb|ACU95155.1| periplasmic glycine betaine/choline-binding (lipo)protein of an
ABC-type transport system (osmoprotectant binding
protein) [Saccharomonospora viridis DSM 43017]
Length = 319
Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats.
Identities = 32/279 (11%), Positives = 78/279 (27%), Gaps = 31/279 (11%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRSLKNKGIDIFMGY 82
+ +T+ + + L+ + + +L+ ID+ Y
Sbjct: 42 EGVEITVGSKDFTENVLLAYIAQIALKAAGAEPIDFTNISGSNSARYALEKGQIDLMWEY 101
Query: 83 WYPSLEKFI-----------------APYLEEGSIKLVAENLQGAKYMLAVNDVGFALG- 124
+ LE+ I + + Y A +
Sbjct: 102 TGTGWLSHLGNDQPIPSEEEQYEAVRKADLEQNGIVWLPYSEVNNTYGFATTEAFAEKHD 161
Query: 125 IKSYQDIAKYKKELGAKIYGI--EPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ + D+ + KE + + + F ++
Sbjct: 162 LHTLSDLTDFLKENPQEAVFCVDTEFANRPDGMPGVQETYGFP------TTTTKTFGLGA 215
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
I NN V + + LN+ + + F + + +R D+ ++ P I+
Sbjct: 216 IYAAVANNTCNVGEVFITDGRIAGLNLRVMED--DKRFFPQYNAAITMRQDFYERYPLIA 273
Query: 243 RLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+L + ++ E+ K + + +D V R +
Sbjct: 274 EVLVPVAEALTIDTMIELNKQVDVDGRDAARVARDWMAE 312
>gi|126437911|ref|YP_001073602.1| substrate-binding region of ABC-type glycine betaine transport
system [Mycobacterium sp. JLS]
gi|126237711|gb|ABO01112.1| Substrate-binding region of ABC-type glycine betaine transport
system [Mycobacterium sp. JLS]
Length = 314
Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats.
Identities = 32/297 (10%), Positives = 78/297 (26%), Gaps = 28/297 (9%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
LA+ ++ + + V +T+ + + LE G+ +
Sbjct: 18 TLALTACGSSNPLGGGEISGDLKTVTVGSADFTESKIIAEIYAQALEAN-GFDITRQFGI 76
Query: 64 VPVTFRSLKNKG--IDIFMGYWYPSLEKFIAPYLEEG--------------SIKLVAENL 107
L + ID+ Y L+ F + ++ +
Sbjct: 77 GSRETYILAVQDHSIDLIPEYTGNLLQYFDEETDVTTPDAVILGLLRALPGDLSILYPSP 136
Query: 108 QGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGN-EGNQRILDMINNNKFSL 166
K +AV+ + + I +G + + + +
Sbjct: 137 AEDKDTVAVSAETAQR--WNLKTIGDLAAHSPEVKFGGPSEFLNRTEGLPGLKEKYGLDI 194
Query: 167 KGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV 226
+ S+ + + R + + P N+ L + A+V
Sbjct: 195 APSNFVAISDGGGPATV-RALTDGTVTAANIFSTSPAIKQNNLVVLEDPKNNFL--AANV 251
Query: 227 YTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNN-KQDRQFVGRTMLRTH 280
+V S + +L + K + E+ + N D + + +
Sbjct: 252 VPLVASQKKSD--ELKSVLDAVSAKLTTEGLIELNAAVEGNRGVDPDEAAQKWVADN 306
>gi|21224395|ref|NP_630174.1| secreted substrate-binding protein [Streptomyces coelicolor A3(2)]
gi|256784415|ref|ZP_05522846.1| secreted substrate-binding protein [Streptomyces lividans TK24]
gi|289768294|ref|ZP_06527672.1| secreted substrate-binding protein [Streptomyces lividans TK24]
gi|4691391|emb|CAB41558.1| putative secreted substrate-binding protein [Streptomyces
coelicolor A3(2)]
gi|289698493|gb|EFD65922.1| secreted substrate-binding protein [Streptomyces lividans TK24]
Length = 320
Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats.
Identities = 37/280 (13%), Positives = 77/280 (27%), Gaps = 29/280 (10%)
Query: 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--LLAVPVTFRSLKNKGI 76
A D V + + + L+ G K K + + T+ +KN +
Sbjct: 45 AGDKAEAGTVVVGSNNFAESTLLADIYGEALKAK-GLKVTYKHNIGSRETTYGMMKNGSV 103
Query: 77 DIFMGYWYP--------------SLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
+ Y A + + L+ + K ++VN
Sbjct: 104 TVLPEYNGSLLAYLDPKARQKSVEAVNEAAKAKLDKKLTLLESSPAENKDSVSVNAETAK 163
Query: 123 LGIKSYQDIAKYKKELGAKIY--GIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ + K++ + G Q + + + K
Sbjct: 164 KHGLTAESTLADLKDVAPDLVIGGSPEFQTRQQGLKGLESVYGL--KFKSFKALDAGGPL 221
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+Q N + P L E + G A+V +V D L++
Sbjct: 222 TQ--SALTKNDVQAADVFTTDPTIIKEKFVVLKDPENLF--GHANVTPLVTKDGLNEEGV 277
Query: 241 ISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
+ L + K ++ + +K+D V + L+
Sbjct: 278 AT--LNAVSAKLDTETLLDLDAQVQLDKKDPLDVAKEWLK 315
>gi|62180751|ref|YP_217168.1| ABC transporter substrate-binding protein [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|168229516|ref|ZP_02654574.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Kentucky
str. CDC 191]
gi|194442351|ref|YP_002041436.1| amine ABC transporter periplasmic amine-binding protein [Salmonella
enterica subsp. enterica serovar Newport str. SL254]
gi|194472392|ref|ZP_03078376.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Kentucky
str. CVM29188]
gi|197249339|ref|YP_002147136.1| amine ABC transporter periplasmic amine-binding protein [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
gi|197263716|ref|ZP_03163790.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Saintpaul
str. SARA23]
gi|197361852|ref|YP_002141488.1| periplasmic protein [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
gi|204929256|ref|ZP_03220399.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Javiana
str. GA_MM04042433]
gi|207857600|ref|YP_002244251.1| periplasmic protein [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|224583334|ref|YP_002637132.1| periplasmic protein [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|238912608|ref|ZP_04656445.1| putative periplasmic protein [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
gi|62128384|gb|AAX66087.1| putative ABC superfamily (bind_prot) transport protein (possibly
glycine betaine choline transport for osmoprotection)
[Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|194401014|gb|ACF61236.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Newport
str. SL254]
gi|194458756|gb|EDX47595.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Kentucky
str. CVM29188]
gi|197093328|emb|CAR58776.1| putative periplasmic protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|197213042|gb|ACH50439.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Agona str.
SL483]
gi|197241971|gb|EDY24591.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Saintpaul
str. SARA23]
gi|204321800|gb|EDZ06999.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Javiana
str. GA_MM04042433]
gi|205335760|gb|EDZ22524.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Kentucky
str. CDC 191]
gi|206709403|emb|CAR33744.1| putative periplasmic protein [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|224467861|gb|ACN45691.1| putative periplasmic protein [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|322615193|gb|EFY12115.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. 315996572]
gi|322617784|gb|EFY14680.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. 495297-1]
gi|322624622|gb|EFY21453.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. 495297-3]
gi|322626927|gb|EFY23723.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. 495297-4]
gi|322634113|gb|EFY30849.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. 515920-1]
gi|322635696|gb|EFY32406.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. 515920-2]
gi|322640169|gb|EFY36833.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. 531954]
gi|322646408|gb|EFY42920.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. NC_MB110209-0054]
gi|322649376|gb|EFY45812.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. OH_2009072675]
gi|322656496|gb|EFY52785.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. CASC_09SCPH15965]
gi|322661472|gb|EFY57696.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. 19N]
gi|322665640|gb|EFY61824.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. 81038-01]
gi|322667164|gb|EFY63331.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. MD_MDA09249507]
gi|322671170|gb|EFY67298.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. 414877]
gi|322675189|gb|EFY71266.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. 366867]
gi|322680798|gb|EFY76833.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. 413180]
gi|322686973|gb|EFY82950.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. 446600]
gi|322715226|gb|EFZ06797.1| ABC transporter substrate-binding protein [Salmonella enterica
subsp. enterica serovar Choleraesuis str. A50]
gi|323192737|gb|EFZ77964.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. 609458-1]
gi|323198831|gb|EFZ83930.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. 556150-1]
gi|323205159|gb|EFZ90137.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. 609460]
gi|323208202|gb|EFZ93146.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. 507440-20]
gi|323215773|gb|EGA00516.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. MB101509-0077]
gi|323222877|gb|EGA07233.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. MB102109-0047]
gi|323233653|gb|EGA17745.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. 2009083312]
gi|323237723|gb|EGA21783.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. 2009085258]
gi|323245706|gb|EGA29700.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. 315731156]
gi|323248930|gb|EGA32854.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. IA_2009159199]
gi|323252999|gb|EGA36832.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. IA_2010008282]
gi|323258675|gb|EGA42337.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. IA_2010008283]
gi|323259507|gb|EGA43142.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. IA_2010008284]
gi|323268290|gb|EGA51765.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. IA_2010008285]
Length = 305
Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats.
Identities = 47/314 (14%), Positives = 87/314 (27%), Gaps = 36/314 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--N 58
+ K+ L L + A PV T+ A M +LE G KT
Sbjct: 3 ISKLWVSSLALLATVSLPLQAAS---PVTVGSKIDTEGALLGNMILQVLESH-GVKTVNK 58
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------I 100
I+L PV ++ +DI+ Y F +
Sbjct: 59 IQLGTTPVVRGAITAGELDIYPEYTGNGAFFFKDENDPAWKNAKQGFEKVKKLDAEQNKL 118
Query: 101 KLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDM 158
+ + +AV S + K+ E +
Sbjct: 119 VWLTPAPANNTWTIAVRQDIAEKNKLSSLADLSRYLKEGGTFKLAASAEFIERADALPAF 178
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEE 217
F+L +L+ + + I+ + + +++ + L + L +
Sbjct: 179 EKAYDFTLNQNQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPKG 238
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
+ + VVR L P I+ L+ + ++ I D + V
Sbjct: 239 V--QPIYAPAPVVRESVLQAYPQIADWLQPVFASLDEKTLQQLNARIAVEGLDAKKVAAD 296
Query: 276 MLRTHPDLLKNWLI 289
LR K W+
Sbjct: 297 YLRQ-----KGWVK 305
>gi|15965818|ref|NP_386171.1| putative amino acid-binding periplasmic protein [Sinorhizobium
meliloti 1021]
gi|307315651|ref|ZP_07595183.1| Substrate-binding region of ABC-type glycine betaine transport
system [Sinorhizobium meliloti BL225C]
gi|307318886|ref|ZP_07598318.1| Substrate-binding region of ABC-type glycine betaine transport
system [Sinorhizobium meliloti AK83]
gi|15075087|emb|CAC46644.1| Periplasmic substrate-binding protein [Sinorhizobium meliloti 1021]
gi|306895607|gb|EFN26361.1| Substrate-binding region of ABC-type glycine betaine transport
system [Sinorhizobium meliloti AK83]
gi|306898676|gb|EFN29340.1| Substrate-binding region of ABC-type glycine betaine transport
system [Sinorhizobium meliloti BL225C]
Length = 314
Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats.
Identities = 38/286 (13%), Positives = 82/286 (28%), Gaps = 27/286 (9%)
Query: 29 RFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLE 88
A W A + + + + + ++ L F L+ +DI W P+ +
Sbjct: 27 VIAMPPWPSGQAAANILKLGIAKKFSLEAEVRELGTLTAFIGLEKGEVDIQPEVWRPNFD 86
Query: 89 KFIAPYLEEGSIKLVAENLQGAKYML-AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEP 147
+ + ++ E + ++E A + A + + + K L G
Sbjct: 87 ELVRKFVTEKGVVTLSERAVPAWQGICATPEAAATIKSVADLGDPAKTKILDTDGDGRGE 146
Query: 148 GN-----EGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP 202
+ I L+EA E + + + P VF + PH
Sbjct: 147 MWIGAAEWLSTGIERARAAGYGYAANLTLVEAKEEVAMAAVDAAIATARPMVFYCYAPHH 206
Query: 203 INSDLN----IHYLPGGEEISGFGEASVYTVVR-----------------SDYLDKCPNI 241
+ + V + + + K P +
Sbjct: 207 VFKLHQISRLEEPPHDPAKWKIAPPNDPLWVSKSSAATAWDAGQFQIGYATAFAKKHPEV 266
Query: 242 SRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
++ L+ + FS M + +Q R + +H + + W
Sbjct: 267 AQFLQKVDFSPDEVTAMSYALEVERQAPADYARKWVESHAERIDGW 312
>gi|309803294|ref|ZP_07697391.1| ABC transporter, substrate-binding protein, QAT family
[Lactobacillus iners LactinV 11V1-d]
gi|308164802|gb|EFO67052.1| ABC transporter, substrate-binding protein, QAT family
[Lactobacillus iners LactinV 11V1-d]
Length = 505
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 34/307 (11%), Positives = 88/307 (28%), Gaps = 36/307 (11%)
Query: 1 MYKILAVCLFLTTFSISY------ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
M+ I+ + + + ++ + A + M ++LE+
Sbjct: 207 MFLIIVLLFGIVSLGAYSLNNIKTVANSAKSEQIIIASKDDSQFDIIANMYKILLEKNKK 266
Query: 55 YKTNIKLLAVP-VTFRSLKNKGIDIFMG----------------YWYPSLEKFIAPYLEE 97
Y + L+N IDI+ L ++ L +
Sbjct: 267 YHVTFSRRKDDRQILKELRNGNIDIYPEETRKVFSLIDNSDKKFANIDELYRYTRDILYK 326
Query: 98 GSIKLVAEN-LQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
+ + ++A + I D+ KYK +L ++ + +
Sbjct: 327 QDLIYMTPMAYHNNYVLIADKEFAKQNKITKISDLQKYKSKLVVGMF--KDFAYSSNGYE 384
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ + K + A Q R + + P N+ L
Sbjct: 385 GLKDVYKLDFPKMSVTTAD------QCYEKLRKRQVNLIAATSNDPEIKKNNLLILND-- 436
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F V ++ + K + ++++ + K + ++ + ++ V +
Sbjct: 437 DKYYFVPYQVAPIITKRFAKKHHQVVKIIEKLAGKITDDEIIQLETQVKFEHKNAAKVAK 496
Query: 275 TMLRTHP 281
L+ +
Sbjct: 497 AFLQRNK 503
>gi|325924365|ref|ZP_08185905.1| periplasmic glycine betaine/choline-binding lipoprotein
[Xanthomonas gardneri ATCC 19865]
gi|325545152|gb|EGD16466.1| periplasmic glycine betaine/choline-binding lipoprotein
[Xanthomonas gardneri ATCC 19865]
Length = 490
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 30/295 (10%), Positives = 67/295 (22%), Gaps = 34/295 (11%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI--KLLAVPVTFRSLKNKGID 77
V +T+ + + + G +L + +R+L+ ID
Sbjct: 15 SAGAQAAQVTIGSKNFTEAVILGEIATAA-GQRDGVDVQHRAQLGGTRILWRALETGQID 73
Query: 78 IFMGYWYPSLEKFIAPYLEEGSIKLVA--------ENLQGAKYMLAVNDVGFALGIKSYQ 129
+ Y ++ + + A + G + A
Sbjct: 74 AYAEYTGTLAQELLQLPKASQAELRAALDARGLAMTDSLGFQNTYAFGMRAERAQALGIA 133
Query: 130 DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRN 189
++ + I + + L R ++
Sbjct: 134 TMSDLARHPSLTIGLSNEFMQRADGWPGIRAAYALPQTATGLDHD-------LAYRALQS 186
Query: 190 NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
V + + L E + R D + P + + L+ ++
Sbjct: 187 GAIEVTDLYSTDAEIPYYQLQVLRDDRRYF--PEYQAVFLYRKDLAQRAPAMLKTLQGLQ 244
Query: 250 --FSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQ 302
A + + +Q V L GVT D +
Sbjct: 245 GRIDEATMQRLNAQVKLERQSEAAVAAQWL------------GVTPASEADSLIK 287
>gi|325912115|ref|ZP_08174513.1| ABC transporter, substrate-binding protein, QAT family
[Lactobacillus iners UPII 143-D]
gi|325476065|gb|EGC79233.1| ABC transporter, substrate-binding protein, QAT family
[Lactobacillus iners UPII 143-D]
Length = 505
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 32/307 (10%), Positives = 88/307 (28%), Gaps = 36/307 (11%)
Query: 1 MYKILAVCLFLTTFSISY------ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
M+ I+ + + + ++ + A + M ++LE+
Sbjct: 207 MFLIIVLLFGIVSLGAYSLNSIKIGSNSAKSEQIIIASKDDSQFDIIANMYKILLEKNKK 266
Query: 55 YKTNIKLLAVP-VTFRSLKNKGIDIFMG----------------YWYPSLEKFIAPYLEE 97
Y + L+ IDI+ L ++ L +
Sbjct: 267 YHVTFSRRKDDRQILKELRKGNIDIYPEETRKVFSLIDNSDKKFANIDELYRYTRDILYK 326
Query: 98 GSIKLVAEN-LQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
+ + ++A + I D+ KYK +L ++ + + +
Sbjct: 327 QDLIYLTPMAYHNNYVLIADKEFAKQNKITKISDLKKYKSKLVVGMF--KDFADSSNGYE 384
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ N K + + Q + + + P N+ L
Sbjct: 385 GLKNVYKLDFPKMSVTTSD------QCYEKLKKRQVNLIAATSNDPEIKRNNLLILND-- 436
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F V ++ + K + ++++ + K + ++ + ++ V +
Sbjct: 437 DKYYFVPYQVAPIITKRFAKKHHQVVKIIEKLAGKITDDEIIQLETQVKFEHKNAAKVAK 496
Query: 275 TMLRTHP 281
L+ +
Sbjct: 497 AFLQRNK 503
>gi|161613147|ref|YP_001587112.1| hypothetical protein SPAB_00855 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|161362511|gb|ABX66279.1| hypothetical protein SPAB_00855 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 305
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 47/314 (14%), Positives = 87/314 (27%), Gaps = 36/314 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--N 58
+ K+ L L + A PV T+ A M +LE G KT
Sbjct: 3 ISKLWVSSLALLATVSLPLQAAS---PVTVGSKIDTEGALLGNMILQVLESH-GVKTVNK 58
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------I 100
I+L PV ++ +DI+ Y F +
Sbjct: 59 IQLGTTPVVRGAITAGELDIYPEYTGNGAFFFKDENDPAWKNAKQGFEKVKKLDAEQNKL 118
Query: 101 KLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDM 158
+ + +AV S + K+ E +
Sbjct: 119 VWLTPAPANNTWTIAVRQDIAEKNKLSSLADLSRYLKEGGTFKLAASAEFIERADALPAF 178
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEE 217
F+L +L+ + + I+ + + +++ + L + L +
Sbjct: 179 EKAYDFTLNQNQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPKG 238
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
+ + VVR L P I+ L+ + ++ I D + V
Sbjct: 239 V--QPIYAPAPVVRESVLQAYPQIADWLQPVFASLDEKTLQQLNARIAVEGVDAKKVAAD 296
Query: 276 MLRTHPDLLKNWLI 289
LR K W+
Sbjct: 297 YLRQ-----KGWVK 305
>gi|56412921|ref|YP_149996.1| periplasmic protein [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|56127178|gb|AAV76684.1| putative periplasmic protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
Length = 305
Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats.
Identities = 47/314 (14%), Positives = 87/314 (27%), Gaps = 36/314 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--N 58
+ K+ L L + A PV T+ A M +LE G KT
Sbjct: 3 ISKLWVSSLALLATVSLPLQAAS---PVTVGSKIDTEGALLGNMILQVLESH-GVKTVNK 58
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------I 100
I+L PV ++ +DI+ Y F +
Sbjct: 59 IQLGTTPVVRGAITAGELDIYPEYTGNGAFFFKDENDPAWKNAKQGFEKVKKLDAEQNKL 118
Query: 101 KLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDM 158
+ + +AV S + K+ E +
Sbjct: 119 VWLTPAPANNTWTIAVRQDIAEKNKLSSLADLSRYLKEGGTFKLAASAEFIERADALPAF 178
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEE 217
F+L +L+ + + I+ + + +++ + L + L +
Sbjct: 179 EKAYDFTLNQNQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPKG 238
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
+ + VVR L P I+ L+ + ++ I D + V
Sbjct: 239 V--QPIYASAPVVRESVLQAYPQIADWLQPVFASLDEKTLQQLNARIAVEGLDAKKVAAD 296
Query: 276 MLRTHPDLLKNWLI 289
LR K W+
Sbjct: 297 YLRQ-----KGWVK 305
>gi|284172821|ref|YP_003406203.1| Substrate-binding region of ABC-type glycine betaine transport
system [Haloterrigena turkmenica DSM 5511]
gi|284017581|gb|ADB63530.1| Substrate-binding region of ABC-type glycine betaine transport
system [Haloterrigena turkmenica DSM 5511]
Length = 314
Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats.
Identities = 44/306 (14%), Positives = 90/306 (29%), Gaps = 32/306 (10%)
Query: 2 YKILAVCLFLTTFSISYARDA-DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--N 58
IL C T ++ + + A W++ + +L+E
Sbjct: 11 RSILRACSIGATVGLTTTAGCLGTDDEIAVASMKWSEARLMGYLGYEMLKENTDTSVGDE 70
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSL------------------EKFIAPYLEEGSI 100
L F ++KN GID++ Y + E+ EE +
Sbjct: 71 TSLGGSRQCFEAVKNGGIDLYHIYTGGAWSELPPQREELISDPDELYEQVKDDMEEEHGL 130
Query: 101 KLVAENLQGAKYML-AVNDVGFALGIKSYQDIAKYKKELGAK--IYGIEPGNEGNQRILD 157
+ Y + A + GI++ Y + I E +
Sbjct: 131 AYLEPAAFNNTYAIGASPEWADETGIETLSGFVDYIENGNTDVSIVLGPEFQERSDGWPG 190
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
++ + L S A + N + + + +P ++ L EE
Sbjct: 191 LVEHYGIEESAKELDIQSVQADLT--YEILGENEADLGMVFSTNPNIQQFDLTILEDDEE 248
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNIK---FSVALENEMMKLILNNKQDRQFVGR 274
+ +V+ + +++ +I L S ++ I +D Q V R
Sbjct: 249 FFL--PYNPAPLVKKETVEEY-DIEDPLNKASQSLTSEEEVRKLNSRIDLEGEDPQDVAR 305
Query: 275 TMLRTH 280
L+ +
Sbjct: 306 DHLKEN 311
>gi|294627378|ref|ZP_06705963.1| ABC transporter amino acid permease [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292598333|gb|EFF42485.1| ABC transporter amino acid permease [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
Length = 489
Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats.
Identities = 27/286 (9%), Positives = 67/286 (23%), Gaps = 25/286 (8%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI--KL 61
++ + + A V +T+ + + + G +L
Sbjct: 1 MVRAVIAVVLLICGVGAQAAQ---VTIGSKNFTEAVILGEIATAAGKRD-GVDVQHRAQL 56
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA--------ENLQGAKYM 113
+ +R+L+ ID + Y ++ + + A + G +
Sbjct: 57 GGTRILWRALETGQIDAYAEYTGTLAQELLQLPNASQAELRAALDARGLAMTDSLGFQNT 116
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
A ++ + KI + + L
Sbjct: 117 YAFGMKRERAQALGIVSLSDLARHPTLKIGLSNEFMQRADGWPGVRAAYALPQAATGLDH 176
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
R ++ V + + L + V R D
Sbjct: 177 D-------LAYRALQSGAIEVTDLYSTDAEIPYYQLQVLRDDRRYF--PDYQAIFVYRKD 227
Query: 234 YLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
+ P + + L+ ++ + + +Q V L
Sbjct: 228 LAQRSPVMLQALRGLQGRIDETTMQRLNAQVKLERQSEAAVAAHWL 273
>gi|168818129|ref|ZP_02830129.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Weltevreden
str. HI_N05-537]
gi|205345167|gb|EDZ31931.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Weltevreden
str. HI_N05-537]
Length = 305
Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats.
Identities = 47/314 (14%), Positives = 87/314 (27%), Gaps = 36/314 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--N 58
+ K+ L L + A PV T+ A M +LE G KT
Sbjct: 3 ISKLWVSSLSLLATVSLPLQAAS---PVTVGSKIDTEGALLGNMILQVLESH-GVKTVNK 58
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------I 100
I+L PV ++ +DI+ Y F +
Sbjct: 59 IQLGTTPVVRGAITAGELDIYPEYTGNGAFFFKDENDPAWKNAKQGFEKVKKLDAEQNKL 118
Query: 101 KLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDM 158
+ + +AV S + K+ E +
Sbjct: 119 VWLTPAPANNTWTIAVRQDIAEKNKLSSLADLSRYLKEGGTFKLAASAEFIERADALPAF 178
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEE 217
F+L +L+ + + I+ + + +++ + L + L +
Sbjct: 179 EKAYDFTLSQNQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPKG 238
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
+ + VVR L P I+ L+ + ++ I D + V
Sbjct: 239 V--QPIYAPAPVVRESVLQAYPQIADWLQPVFASLDEKTLQQLNARIAVEGLDAKKVAAD 296
Query: 276 MLRTHPDLLKNWLI 289
LR K W+
Sbjct: 297 YLRQ-----KGWVK 305
>gi|320086603|emb|CBY96374.1| putative osmoprotectant uptake system substrate-binding protein
osmF Flags: Precursor [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
Length = 305
Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats.
Identities = 47/314 (14%), Positives = 88/314 (28%), Gaps = 36/314 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--N 58
+ K+ L L + A PV T+ A M +LE G KT
Sbjct: 3 ISKLWVSSLSLLATVSLPLQAAS---PVTVGSKIDTEGALLGNMILQVLESH-GVKTVNK 58
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------I 100
I+L PV ++ +DI+ Y F +
Sbjct: 59 IQLGTTPVVRGAITAGELDIYPEYTGNGAFFFKDENDPAWKNAKQGFEKVKKLDAEQNKL 118
Query: 101 KLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDM 158
+ + +AV S + K+ E +
Sbjct: 119 VWLTPAPANNTWTIAVRQDIAEKNKLSSLADLSRYLKEGGTFKLAASAEFIERADALPAF 178
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEE 217
F+L +L+ + + I+ ++ + +++ + L + L +
Sbjct: 179 EKAYDFTLSQNQLLSLAGGDTAVTIKAAEQQTSGVNAAMAYGTDGPVAALGLQTLSDPKG 238
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
+ + VVR L P I+ L+ + ++ I D + V
Sbjct: 239 V--QPIYAPAPVVRESVLQAYPQIADWLQPVFASLDEKTLQQLNARIAVEGLDAKKVAAD 296
Query: 276 MLRTHPDLLKNWLI 289
LR K W+
Sbjct: 297 YLRQ-----KGWVK 305
>gi|322372038|ref|ZP_08046580.1| Substrate-binding region of ABC-type glycine betaine transport
system [Haladaptatus paucihalophilus DX253]
gi|320548460|gb|EFW90132.1| Substrate-binding region of ABC-type glycine betaine transport
system [Haladaptatus paucihalophilus DX253]
Length = 317
Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats.
Identities = 34/291 (11%), Positives = 85/291 (29%), Gaps = 29/291 (9%)
Query: 13 TFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPVTFRS 70
V+ + +T+ + L + L FR+
Sbjct: 26 LSGCLTLATELGGGSVKVSSKRFTEQEVLGYIAYEALSANTDLNVTDQVGLGGTTTNFRA 85
Query: 71 LKNKGIDIFMGYWYPSLE------------------KFIAPYLEEGSIKLV-AENLQGAK 111
L + ++ Y + + K A + ++ + + L
Sbjct: 86 LDTDEVQLYWEYTGTAWQTLPPQHDTVISDPEKLYRKVKAEFEQKHGLTFLQRAQLNNTY 145
Query: 112 YMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGI--EPGNEGNQRILDMINNNKFSLKGF 169
+LA D G+++ D A++ + G+ + + + F+
Sbjct: 146 VILANPDWAKKTGVETLSDFAQFLQNGGSNLTVALNAEFQSRADGWPGLSEHYGFADDLG 205
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV 229
+ + + + + V + + P + L + + +
Sbjct: 206 NVTVNNIGSGL--LYQVIGKGSADVGVGFNTDPRILQFGLRVLTDDKGYF--PVYNAAPL 261
Query: 230 VRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLR 278
V S+ L+ P+I LL + + + K + K++ Q V + L+
Sbjct: 262 VDSETLENHPSIRSLLNAASDGLTTDVMRRLNKQVAIEKKNPQTVAKEYLQ 312
>gi|296103778|ref|YP_003613924.1| putative glycine/betaine/choline ABC transporter substrate-binding
component [Enterobacter cloacae subsp. cloacae ATCC
13047]
gi|295058237|gb|ADF62975.1| putative glycine/betaine/choline ABC transporter substrate-binding
component [Enterobacter cloacae subsp. cloacae ATCC
13047]
Length = 305
Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats.
Identities = 40/296 (13%), Positives = 86/296 (29%), Gaps = 28/296 (9%)
Query: 9 LFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPV 66
+ + + + PV+ T+ A + +LE G KT ++L PV
Sbjct: 8 VVSAALFAALSLPLQAAEPVKVGSKIDTEGALLGNIILQVLESH-GVKTVNKVQLGTTPV 66
Query: 67 TFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKLVAENLQ 108
++ + +DI+ Y F + +
Sbjct: 67 VRGAITSGELDIYPEYTGNGAFFFKDENDPAWKNAKAGYEKVKKLDAEQNKLVWLTPAPA 126
Query: 109 GAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMINNNKFSL 166
+ +AV G + ++ K+ E + F L
Sbjct: 127 NNTWTIAVRKDVAEKGKLTSLADLSRYLKEKGDFKLAASAEFIERPDALPAFEKAYDFKL 186
Query: 167 KGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEAS 225
+L+ + + I+ + + +++ + L + L + + +
Sbjct: 187 DQAQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLTDPKGV--QPIYA 244
Query: 226 VYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
VVR L P+I+ LK + K ++ I D + V L+
Sbjct: 245 PTPVVREAVLKAYPDIADWLKPVFEKLDAKTLQQLNASIAVEGLDAKKVAADFLKQ 300
>gi|108801930|ref|YP_642127.1| substrate-binding region of ABC-type glycine betaine transport
system [Mycobacterium sp. MCS]
gi|119871082|ref|YP_941034.1| substrate-binding region of ABC-type glycine betaine transport
system [Mycobacterium sp. KMS]
gi|108772349|gb|ABG11071.1| Substrate-binding region of ABC-type glycine betaine transport
system [Mycobacterium sp. MCS]
gi|119697171|gb|ABL94244.1| Substrate-binding region of ABC-type glycine betaine transport
system [Mycobacterium sp. KMS]
Length = 314
Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats.
Identities = 31/297 (10%), Positives = 82/297 (27%), Gaps = 28/297 (9%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
LA+ ++ + + V +T+ + + LE G+ + +
Sbjct: 18 TLALTACGSSNPLGGGEISGDLKTVTVGSADFTESKIIAEIYAQALEAN-GFDISRQFGI 76
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEG--------------SIKLVAENL 107
+ ++++ ID+ Y L+ F + ++ +
Sbjct: 77 GSRETYIPAVQDHSIDLIPEYTGNLLQYFDEETDVTTPDAVILGLLRALPGDLSILYPSP 136
Query: 108 QGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGN-EGNQRILDMINNNKFSL 166
K +AV+ + + I +G + + + +
Sbjct: 137 AEDKDTVAVSAETAQR--WNLKTIGDLAAHSPEVKFGGPSEFLNRTEGLPGLKEKYGLDI 194
Query: 167 KGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV 226
+ S+ + + R + + P N+ L + A+V
Sbjct: 195 APSNFVAISDGGGPATV-RALTDGTVTAANIFSTSPAIEQNNLVVLEDPKNNFL--AANV 251
Query: 227 YTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNN-KQDRQFVGRTMLRTH 280
+V S + +L + K + E+ + N D + + +
Sbjct: 252 VPLVASQKKSD--ELKSVLDAVSAKLTTEGLIELNAAVEGNRGVDPDEAAQKWVADN 306
>gi|294667621|ref|ZP_06732835.1| ABC transporter amino acid permease [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292602616|gb|EFF46053.1| ABC transporter amino acid permease [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 489
Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats.
Identities = 29/289 (10%), Positives = 68/289 (23%), Gaps = 28/289 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI- 59
M + + L + A V +T+ + + + G
Sbjct: 1 MVRAFIAVVLLICGVGAQAAQ------VTIGSKNFTEAVILGEIATAAGKRD-GVDVQHR 53
Query: 60 -KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA--------ENLQGA 110
+L + +R+L+ ID + Y ++ + + A + G
Sbjct: 54 AQLGGTRILWRALETGQIDAYAEYTGTLAQELLQLPNASQAELRAALDARGLAMTDSLGF 113
Query: 111 KYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
+ A ++ + KI + +
Sbjct: 114 QNTYAFGMKRERAQALGIVSLSDLARHPTLKIGLSNEFMQRADGWPGVRAAYALPQAATG 173
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
L R ++ V + + L + V
Sbjct: 174 LDHD-------LAYRALQSGAIEVTDLYSTDAEIPYYQLQVLRDDRRYF--PDYQAIFVY 224
Query: 231 RSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
R D + P + + L+ ++ + + +Q V L
Sbjct: 225 RKDLAQRSPVMLQALRGLQGRIDGTTMQRLNAQVKLERQSEAAVAAHWL 273
>gi|21229643|ref|NP_635560.1| ABC transporter amino acid permease [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66766519|ref|YP_241281.1| ABC transporter amino acid permease [Xanthomonas campestris pv.
campestris str. 8004]
gi|21111122|gb|AAM39484.1| ABC transporter amino acid permease [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66571851|gb|AAY47261.1| ABC transporter amino acid permease [Xanthomonas campestris pv.
campestris str. 8004]
Length = 490
Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats.
Identities = 33/316 (10%), Positives = 75/316 (23%), Gaps = 43/316 (13%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI- 59
M + A + S A V +T+ + + + G +
Sbjct: 1 MMR--APLMAFALLICSGVAQAAQ---VTIGSKNFTEAVILGEIATAA-GQRDGVQVQHR 54
Query: 60 -KLLAVPVTFRSLKNKGIDIFMGYWYP----------SLEKFIAPYLEEGSIKLVAENLQ 108
+L + +R+L+ ID + Y + + L+ + +
Sbjct: 55 AQLGGTRILWRALETGQIDAYADYTGTLAQELLQLPKASHAELRAALDARGLAMTDSLGF 114
Query: 109 GAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
Y + + ++ + KI + + +
Sbjct: 115 ENTYAFGMRRERAQA--LGIRSLSDLARHPDLKIGLSNEFMQRADGWPGVRGAYALPQRA 172
Query: 169 FRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYT 228
L R ++ V + + L + F E
Sbjct: 173 TGLDHD-------LAYRALQSGAIEVTDLYSTDAEIPYYQLQVLQD--DRHYFSEYQAVF 223
Query: 229 VVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKN 286
+ R D + P + L+ ++ A + + ++ V L
Sbjct: 224 LYRKDLAQRAPTMVATLQGLQGRIDEATMQRLNAQVKLERKSEAAVAAQWL--------- 274
Query: 287 WLIGVTTFDGQDPSRQ 302
GV D
Sbjct: 275 ---GVAPASATDGRVA 287
>gi|16765495|ref|NP_461110.1| transport protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|167991088|ref|ZP_02572187.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|168242247|ref|ZP_02667179.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Heidelberg
str. SL486]
gi|168259498|ref|ZP_02681471.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Hadar str.
RI_05P066]
gi|168466159|ref|ZP_02700029.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Newport
str. SL317]
gi|194449886|ref|YP_002046218.1| amine ABC transporter periplasmic amine-binding protein [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|198244896|ref|YP_002216249.1| amine ABC transporter periplasmic amine-binding protein [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|16420701|gb|AAL21069.1| putative ABC superfamily transport protein (bind_prot) [Salmonella
enterica subsp. enterica serovar Typhimurium str. LT2]
gi|194408190|gb|ACF68409.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Heidelberg
str. SL476]
gi|195631176|gb|EDX49736.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Newport
str. SL317]
gi|197939412|gb|ACH76745.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|205330569|gb|EDZ17333.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|205338434|gb|EDZ25198.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Heidelberg
str. SL486]
gi|205350795|gb|EDZ37426.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Hadar str.
RI_05P066]
gi|261247379|emb|CBG25204.1| putative periplasmic protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267994227|gb|ACY89112.1| putative transport protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|301158727|emb|CBW18239.1| putative periplasmic protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312913156|dbj|BAJ37130.1| amine ABC transporter substrate binding protein [Salmonella
enterica subsp. enterica serovar Typhimurium str.
T000240]
gi|321224817|gb|EFX49880.1| Osmoprotectant ABC transporter binding protein YehZ [Salmonella
enterica subsp. enterica serovar Typhimurium str.
TN061786]
gi|323130491|gb|ADX17921.1| putative transport protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. 4/74]
gi|326623999|gb|EGE30344.1| putative transport protein [Salmonella enterica subsp. enterica
serovar Dublin str. 3246]
gi|332989099|gb|AEF08082.1| putative transport protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
Length = 305
Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats.
Identities = 46/314 (14%), Positives = 87/314 (27%), Gaps = 36/314 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--N 58
+ K+ L L + A PV T+ A M +LE G KT
Sbjct: 3 ISKLWVSSLALLATVSLPLQAAS---PVTVGSKIDTEGALLGNMILQVLESH-GVKTVNK 58
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------I 100
I+L PV ++ +DI+ Y F +
Sbjct: 59 IQLGTTPVVRGAITAGELDIYPEYTGNGAFFFKDENDPAWKNAKQGFEKVKKLDAEQNKL 118
Query: 101 KLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDM 158
+ + +A+ S + K+ E +
Sbjct: 119 VWLTPAPANNTWTIAIRQDIAEKNKLSSLADLSRYLKEGGTFKLAASAEFIERADALPAF 178
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEE 217
F+L +L+ + + I+ + + +++ + L + L +
Sbjct: 179 EKAYDFTLNQNQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPKG 238
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
+ + VVR L P I+ L+ + ++ I D + V
Sbjct: 239 V--QPIYAPAPVVRESVLQAYPQIADWLQPVFASLDEKTLQQLNARIAVEGLDAKKVAAD 296
Query: 276 MLRTHPDLLKNWLI 289
LR K W+
Sbjct: 297 YLRQ-----KGWVK 305
>gi|326779051|ref|ZP_08238316.1| ABC-type glycine betaine transport, periplasmic subunit
[Streptomyces cf. griseus XylebKG-1]
gi|326659384|gb|EGE44230.1| ABC-type glycine betaine transport, periplasmic subunit
[Streptomyces cf. griseus XylebKG-1]
Length = 321
Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats.
Identities = 30/286 (10%), Positives = 74/286 (25%), Gaps = 29/286 (10%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLK 72
+ + +++ MT ++ + G + L ++
Sbjct: 33 GSVGQGEPLKGATLTVTSKNFSENIILGQMTGLVFKAA-GAEVLDRTNLPGSISAREAII 91
Query: 73 NKGIDIFMGYWYPSLEKFI----------------APYLEEGSIKLVAENLQGAKYMLAV 116
N D Y F+ + + Y LA+
Sbjct: 92 NGDADAQWDYTGTGWITFLGHAEPIVDPKKQYEAVRDEDRGNGVVWLPPAPLDNTYALAI 151
Query: 117 -NDVGFALGIKSYQDIAKYKKELGAKIYGI--EPGNEGNQRILDMINNNKFSLKGFRLIE 173
+K+ D+A K + + + M + + +
Sbjct: 152 SKKNNAKYRLKTLSDVAALAKRDPGAVTVCVENEFASRDDGLPGMEKRYGMRIPAGNIQK 211
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
++Q+ ++ + + +N+ L + F + V+
Sbjct: 212 MDAGIIYTQVST---SDSCLLGEVFTTDGRIKAMNLDVLED--DKHFFPNYNASPVIHEA 266
Query: 234 YLDKCPNISRLLK--NIKFSVALENEMMKLILNNKQDRQFVGRTML 277
+K P I+ LL K + + + + +D V + L
Sbjct: 267 TFEKYPVIAELLDPLARKLTTEVAQTLNAKVDVEGEDPHEVAKDWL 312
>gi|309805204|ref|ZP_07699256.1| ABC transporter, substrate-binding protein, QAT family
[Lactobacillus iners LactinV 09V1-c]
gi|308165438|gb|EFO67669.1| ABC transporter, substrate-binding protein, QAT family
[Lactobacillus iners LactinV 09V1-c]
Length = 505
Score = 106 bits (263), Expect = 5e-21, Method: Composition-based stats.
Identities = 34/307 (11%), Positives = 89/307 (28%), Gaps = 36/307 (11%)
Query: 1 MYKILAVCLFLTTFSISY------ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
M+ I+ + + + ++ + A + M ++LE+
Sbjct: 207 MFLIIVLLFGIVSLGAYSLNSIKIGSNSAKSEQIIIASKDDSQFDIIANMYKILLEKNKK 266
Query: 55 YKTNIKLLAVP-VTFRSLKNKGIDIFMG----------------YWYPSLEKFIAPYLEE 97
Y + L+ IDI+ L ++ L +
Sbjct: 267 YHVTFSRRKDDRQILKELRKGNIDIYPEETRKVFSLIDNSDKKFANIDELYRYTRDILYK 326
Query: 98 GSIKLVAEN-LQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
+ + ++A + I D+ KYK +L +++ + + +
Sbjct: 327 QDLIYLTPMAYHNNYVLIADKEFAKQNKITKISDLQKYKSKLVVEMF--KDFADSSNGYE 384
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ N K + A Q R + + P N+ L
Sbjct: 385 GLKNVYKLDFPKMSVTTAD------QCYEKLRKRQVNLIAAKSNDPEIKKNNLLILND-- 436
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F V ++ + K + ++++ + K + ++ + ++ V +
Sbjct: 437 DKYYFVPYQVAPIITKRFAKKHHQVVKIIEKLAGKITDDEMIQLETKVKLEHKNAAKVAK 496
Query: 275 TMLRTHP 281
L+ +
Sbjct: 497 AFLQRNK 503
>gi|290508580|ref|ZP_06547951.1| osmoprotectant transport system substrate-binding protein
[Klebsiella sp. 1_1_55]
gi|289777974|gb|EFD85971.1| osmoprotectant transport system substrate-binding protein
[Klebsiella sp. 1_1_55]
Length = 305
Score = 106 bits (263), Expect = 5e-21, Method: Composition-based stats.
Identities = 41/282 (14%), Positives = 80/282 (28%), Gaps = 28/282 (9%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGIDIFM 80
+ PV+ T+ A M +LE G KT I+L PV ++ +DI+
Sbjct: 22 QAAEPVKVGSKIDTEGALLGNMIQQVLESH-GVKTINKIQLGTTPVVRGAIVAGELDIYP 80
Query: 81 GYWYPSLEKFIAPYLEEGS------------------IKLVAENLQGAKYMLAVNDVGFA 122
Y F + + + +AV
Sbjct: 81 EYTGNGAFFFKDENDPAWKHAQQGYEKVKRLDQEKHQLVWLTPAPANNTWTIAVRQDLAE 140
Query: 123 LGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ + K+ E + F+L +L+ + +
Sbjct: 141 KNHLTSLADLSRYLKQGGEFKLAASAEFIERPDALPAFEKAYGFNLNQNQLLSLAGGDTA 200
Query: 181 SQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
I+ + + +++ + L + L + + + VVR L P
Sbjct: 201 VTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV--QPIYAPTPVVREAVLKAYP 258
Query: 240 NISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
I+ LK + ++ I QD + V L+
Sbjct: 259 QIADWLKPVFASLDEKTLQQLNARIAVEGQDAKRVAADYLQQ 300
>gi|111018177|ref|YP_701149.1| glycine betaine/carnitine/choline binding protein precursor
[Rhodococcus jostii RHA1]
gi|110817707|gb|ABG92991.1| possible glycine betaine/carnitine/choline binding protein
precursor [Rhodococcus jostii RHA1]
Length = 327
Score = 106 bits (263), Expect = 6e-21, Method: Composition-based stats.
Identities = 33/322 (10%), Positives = 77/322 (23%), Gaps = 52/322 (16%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCT--------------------PVRFADTGWTDIAA 40
+ K +A ++ + +S + +T+
Sbjct: 4 LRKAIAATAVTLCGVLAASCGLESGGALPLSVEPGSIQPVPELEGVKITVGSKDFTEQVT 63
Query: 41 TTAMTSVILEEILGYKTN--IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFI------- 91
+ L G + + T + + ID+ Y ++
Sbjct: 64 LGYIIEFALSAA-GAEVRDLTNIQGSNSTRDAQLDGQIDVTYEYTGTGWINYLGNEIPIP 122
Query: 92 ----------APYLEEGSIKLVAENLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKKELGA 140
L+ + V Y LA++ GI + + A A
Sbjct: 123 DPTAQFEAVRDEDLDSNGMVWVDPAPMNNTYALAMSRQTAEETGITTLSEYADLVNRDPA 182
Query: 141 KIYGI--EPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN-IPAVFLS 197
N M F I + +
Sbjct: 183 AATTCVETEFNVRQDGFPGMAAKYGFDPARANRQILQTGI----IYQATADGTQCKFGEV 238
Query: 198 WEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALE 255
+ L++ L + + + +R D+ + P ++ ++ I +
Sbjct: 239 FTTDGRIIALDLVLLDDDRQFF--PKYNPAITMRKDFAEAHPQVAEVMAPISAALTNEEI 296
Query: 256 NEMMKLILNNKQDRQFVGRTML 277
E+ + + ++ V R L
Sbjct: 297 TELNRRVDVEGEEPADVARDWL 318
>gi|281358475|ref|ZP_06244956.1| Substrate-binding region of ABC-type glycine betaine transport
system [Victivallis vadensis ATCC BAA-548]
gi|281315098|gb|EFA99130.1| Substrate-binding region of ABC-type glycine betaine transport
system [Victivallis vadensis ATCC BAA-548]
Length = 300
Score = 106 bits (263), Expect = 6e-21, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 1/133 (0%)
Query: 165 SLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEA 224
GFR+I ++ A ++ RN A +W PH +N+ L I YL E++ G E
Sbjct: 34 DSGGFRVITSTTPAMIEEMAYAIRNKRCAAITAWSPHWMNAKLPIKYLKDPEKVFGEAE- 92
Query: 225 SVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLL 284
+V+T+VR + P +++ L+ K+ A + + + D R L+ +P+L
Sbjct: 93 NVHTIVRRGFEADYPEVAKFLRQFKWKPADLDSLSLMSYECGGDFDKAAREWLKRNPELQ 152
Query: 285 KNWLIGVTTFDGQ 297
+L GV G
Sbjct: 153 AAFLKGVRPQPGA 165
Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 35/143 (24%), Positives = 59/143 (41%), Gaps = 4/143 (2%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMG 81
+R D G+ + AT M ++LEE LG + +P+ F +L N D+ +
Sbjct: 161 PQPGAKLRMVDIGFYNEIATNRMLKILLEEHLGCEVTNVSTTIPIAFEALANGTQDVMVT 220
Query: 82 YWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAK 141
W P+ K + + + + NL GA +AV + ++S D+ ++ E G K
Sbjct: 221 VWLPNYHKNEFAKIRD-RVTDLGVNLPGATMGIAVPEYAP---VESIADLKDHRDEFGGK 276
Query: 142 IYGIEPGNEGNQRILDMINNNKF 164
I G EPG +
Sbjct: 277 IIGNEPGQGILLLAEKALEVYGL 299
>gi|332161035|ref|YP_004297612.1| putative substrate-binding transport protein [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|318604908|emb|CBY26406.1| osmoprotectant ABC transporter binding protein YehZ [Yersinia
enterocolitica subsp. palearctica Y11]
gi|325665265|gb|ADZ41909.1| putative substrate-binding transport protein [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|330859438|emb|CBX69783.1| putative osmoprotectant uptake system substrate-binding protein
osmF [Yersinia enterocolitica W22703]
Length = 365
Score = 106 bits (263), Expect = 6e-21, Method: Composition-based stats.
Identities = 48/302 (15%), Positives = 93/302 (30%), Gaps = 31/302 (10%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
+I A+ + S ++ AD VR T+ + + +L+ G KT +
Sbjct: 64 RIFALATVMLAVSGGASQAAD---TVRVGSKIDTEGSLLGNIIVQVLDAN-GIKTTNKSQ 119
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L V ++ IDI+ Y F +
Sbjct: 120 LGTTKVVRGAITAGEIDIYPEYTGNGAFFFSDEKDPAWKDAKAGYEKVKALDYEKNKLVW 179
Query: 103 VAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKEL-GAKIYGIEPGNEGNQRILDMIN 160
++ + +AV A +K+ D+ K+ K+ E +
Sbjct: 180 LSPAPANNTWTIAVRQDLASANNLKTLDDLGKWINAGGKFKLAASAEFIERPDALPAFQQ 239
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + +++ + L + L + +
Sbjct: 240 AYGFKLNQDQLLSLAGGDTAVTIKAAAEQTSGVNAAMAYGTDGPVAALGLQTLEDTKGV- 298
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ V+R L PNIS LL + A ++ I QD + V L
Sbjct: 299 -QPIYAPTPVIRETTLKAHPNISALLDPVFATLDSATLQKLNARIAVEGQDAKKVAANYL 357
Query: 278 RT 279
+
Sbjct: 358 KE 359
>gi|262201513|ref|YP_003272721.1| substrate-binding region of ABC-type glycine betaine transporter
[Gordonia bronchialis DSM 43247]
gi|262084860|gb|ACY20828.1| Substrate-binding region of ABC-type glycine betaine transport
system [Gordonia bronchialis DSM 43247]
Length = 331
Score = 106 bits (263), Expect = 6e-21, Method: Composition-based stats.
Identities = 32/299 (10%), Positives = 70/299 (23%), Gaps = 27/299 (9%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
+++ T ++ + + +T+ +T+ L G A
Sbjct: 30 LVSSSGTFKTGALPDGAKPLAGAELVVTSKSFTEGVILGKITASYL-ASAGADVTDMTGA 88
Query: 64 VPVTFRSLK--NKGIDIFMGYWYPSLEKFIAP-----------------YLEEGSIKLVA 104
N DI Y + + + + +
Sbjct: 89 PGSASSRQAQLNGDADILWEYTGTAWVNYHQKTETISDPTELWKQVAAIEKSDYDLVWLP 148
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK- 163
Y A + E + L M+
Sbjct: 149 PANFNDTYAFAASPATAKRLNVRTLSDVARLPERDRTFCVDDEFFSRADGFLSMLAKYGI 208
Query: 164 -FSLKGFRLIEASELASFSQIRRDQRNNIP-AVFLSWEPHPINSDLNIHYLPGGEEISGF 221
++ I N P + +L + L ++
Sbjct: 209 PYNKPNGVPPRNVTRMDAGVIYSATNNADPCNFGEVYTTDGRVKNLGLVLLDDDKKFFL- 267
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLR 278
S VVR + + K P ++ LL I + + ++ + + +D V L+
Sbjct: 268 -PYSGTAVVRGEIMRKYPQLADLLGAISQRLTNDVMLDLNARVDIDGEDPADVAYDWLK 325
>gi|238757282|ref|ZP_04618469.1| hypothetical protein yaldo0001_11820 [Yersinia aldovae ATCC 35236]
gi|238704660|gb|EEP97190.1| hypothetical protein yaldo0001_11820 [Yersinia aldovae ATCC 35236]
Length = 310
Score = 106 bits (263), Expect = 6e-21, Method: Composition-based stats.
Identities = 46/302 (15%), Positives = 89/302 (29%), Gaps = 31/302 (10%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
+I + + T SI + AD VR T+ + + +LE G KT +
Sbjct: 9 RIFVLVAMMITLSIGVSHAAD---TVRVGSKIDTEGSLLGNIIVQVLETN-GIKTTNKSQ 64
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L V ++ IDI+ Y F +
Sbjct: 65 LGTTKVVRGAISAGEIDIYPEYTGNGAFFFSDEKDPAWKNAKAGYEKVKALDYDKNKLVW 124
Query: 103 VAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKEL-GAKIYGIEPGNEGNQRILDMIN 160
+ + +AV +K+ +D+ K+ K+ E +
Sbjct: 125 LEPAPANNTWTIAVRKDLAKANNLKTLEDLGKWINAGGKFKLAASAEFIERPDALPAFQQ 184
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + +++ + L + L + +
Sbjct: 185 AYGFQLNQDQLLSLAGGDTAVTIKAAAEQTSGVNAAMAYGTDGPVAALGLQTLDDPKGV- 243
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ V+R L P I LL + ++ I QD + V L
Sbjct: 244 -QPIYAPAPVIREATLKAHPTIPALLNPVFASLDAPTLQKLNARIAVEGQDAKKVAANYL 302
Query: 278 RT 279
+
Sbjct: 303 KE 304
>gi|302554942|ref|ZP_07307284.1| ABC transporter substrate-binding protein [Streptomyces
viridochromogenes DSM 40736]
gi|302472560|gb|EFL35653.1| ABC transporter substrate-binding protein [Streptomyces
viridochromogenes DSM 40736]
Length = 327
Score = 106 bits (263), Expect = 6e-21, Method: Composition-based stats.
Identities = 34/278 (12%), Positives = 70/278 (25%), Gaps = 27/278 (9%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGID 77
V + + + L+ G K K + T+ +KN I
Sbjct: 53 GGGAKGDTVVVGSNNFAESILLADIYGEALKAK-GIKVTYKPNIGSRETTYGLMKNGTIT 111
Query: 78 IFMGYWYPSLEKFIAPYLEEG--------------SIKLVAENLQGAKYMLAVNDVGFAL 123
+ Y L A + ++L+ + K + VN
Sbjct: 112 VLPEYNGSLLAYLDAKAKPKTVEETTTAIDAKLDSKLELLKPSAAQNKDSVTVNAETAKK 171
Query: 124 GIKSYQDIAKYKKELGAK--IYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
+ K++ G +Q + + + +
Sbjct: 172 YKLTSDSSIADLKDVAKDLDFGGSPEFQTRHQGLAGLKSVYGLE--FKSFKSLDAGGPLT 229
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD-YLDKCPN 240
Q + N + P + L E + GF +V +VR +
Sbjct: 230 Q--TALKKNTVQAADLFTTDPTITRDKFVVLKDPENLFGF--QNVQPLVRKGELSKEGAA 285
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLR 278
+ K ++ + K+D V + L+
Sbjct: 286 ALDAVSA-KLDTKALLDLDAQVQLEKKDPLDVAKAWLK 322
>gi|312871786|ref|ZP_07731874.1| ABC transporter, substrate-binding protein, QAT family
[Lactobacillus iners LEAF 3008A-a]
gi|311092728|gb|EFQ51084.1| ABC transporter, substrate-binding protein, QAT family
[Lactobacillus iners LEAF 3008A-a]
Length = 505
Score = 106 bits (263), Expect = 6e-21, Method: Composition-based stats.
Identities = 34/307 (11%), Positives = 89/307 (28%), Gaps = 36/307 (11%)
Query: 1 MYKILAVCLFLTTFSISY------ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
M+ I+ + + + ++ + A + M ++LE+
Sbjct: 207 MFLIIVLLFGIVSLGAYSLNNIKTVANSAKSEQIIIASKDDSQFDIIANMYKILLEKNKK 266
Query: 55 YKTNIKLLAVP-VTFRSLKNKGIDIFMG----------------YWYPSLEKFIAPYLEE 97
Y + L+ IDI+ L ++ L +
Sbjct: 267 YHVTFSRRKDDRQILKELRKGNIDIYPEETRKVFSLIDNSDKKFANIDELYRYTRDILYK 326
Query: 98 GSIKLVAEN-LQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
+ + ++A + I D+ KYK +L +++ + + +
Sbjct: 327 QDLIYLTPMAYHNNYVLIADKEFAKQNKITKISDLQKYKSKLVVEMF--KDFADSSNGYE 384
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ N K + A Q R + + P N+ L
Sbjct: 385 GLKNVYKLDFPKMSVTTAD------QCYEKLRKRQVNLIAAKSNDPEIKKNNLLILND-- 436
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F V ++ + K + ++++ + K + ++ + ++ V +
Sbjct: 437 DKYYFVPYQVAPIITKRFAKKHHQVVKIIEKLAGKITDDEMIQLETKVKLEHKNAAKVAK 496
Query: 275 TMLRTHP 281
L+ +
Sbjct: 497 AFLQRNK 503
>gi|206577208|ref|YP_002237451.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Klebsiella pneumoniae 342]
gi|206566266|gb|ACI08042.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Klebsiella pneumoniae 342]
Length = 305
Score = 106 bits (263), Expect = 7e-21, Method: Composition-based stats.
Identities = 41/282 (14%), Positives = 80/282 (28%), Gaps = 28/282 (9%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGIDIFM 80
+ PV+ T+ A M +LE G KT I+L PV ++ +DI+
Sbjct: 22 QAAEPVKVGSKIDTEGALLGNMIQQVLESH-GVKTINKIQLGTTPVVRGAIVAGELDIYP 80
Query: 81 GYWYPSLEKFIAPYLEEGS------------------IKLVAENLQGAKYMLAVNDVGFA 122
Y F + + + +AV
Sbjct: 81 EYTGNGAFFFKDENDPAWKNAQQGYEKVKRLDQEKHQLVWLTPAPANNTWTIAVRQDLAE 140
Query: 123 LGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ + K+ E + F+L +L+ + +
Sbjct: 141 KNHLTSLADLSRYLKQGGEFKLAASAEFIERPDALPAFEKAYGFNLNQNQLLSLAGGDTA 200
Query: 181 SQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
I+ + + +++ + L + L + + + VVR L P
Sbjct: 201 VTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV--QPIYAPTPVVREAVLKAYP 258
Query: 240 NISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
I+ LK + ++ I QD + V L+
Sbjct: 259 QIADWLKPVFASLDEKTLQQLNARIAVEGQDAKRVAADYLQQ 300
>gi|188579744|ref|YP_001923189.1| Substrate-binding region of ABC-type glycine betaine transport
system [Methylobacterium populi BJ001]
gi|179343242|gb|ACB78654.1| Substrate-binding region of ABC-type glycine betaine transport
system [Methylobacterium populi BJ001]
Length = 296
Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats.
Identities = 34/293 (11%), Positives = 78/293 (26%), Gaps = 28/293 (9%)
Query: 9 LFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL--AVPV 66
+ ++ A + T+ A + S++LE LG +L +
Sbjct: 1 MAAAAALVTNPARAMPAHRIVIGSKSDTEGALLGNLISLVLE-GLGLSVERRLGLGPTLI 59
Query: 67 TFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS-----------------IKLVAENLQG 109
+L ID++ Y + +
Sbjct: 60 VRTALLAGEIDLYPEYTGNVAFFSGTESDSAWKTGESAYALALRLDAARGLVWLGRAPAN 119
Query: 110 AKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
+++AV G+ + D A + ++ E + + F L
Sbjct: 120 NTWLIAVQGALARERGLATMLDFAGAVHDDRIRLAASTEFVESPAALPSFESAYGFRLPL 179
Query: 169 FRLIEASELASFSQIRRDQRNNI--PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV 226
R++ + + R I + + + L++ + +
Sbjct: 180 SRIV-SLPGGDTAVTARAAAEGISGINAGMVYGTDGALAALDLTVMSDPKGAQI--VYEP 236
Query: 227 YTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
V+R+ L++ P I L + + + I + V L
Sbjct: 237 APVIRAGTLERHPQIRGALDRVFARLDADTLRRLNAAITVEGRTAAAVAAEWL 289
>gi|306821656|ref|ZP_07455254.1| glycine/betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, binding protein [Eubacterium yurii
subsp. margaretiae ATCC 43715]
gi|304550401|gb|EFM38394.1| glycine/betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, binding protein [Eubacterium yurii
subsp. margaretiae ATCC 43715]
Length = 280
Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats.
Identities = 30/282 (10%), Positives = 78/282 (27%), Gaps = 30/282 (10%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILG-YKTNIKL------------------ 61
+ + A ++ + + ++E + I
Sbjct: 3 SGSTGDGIVIAGGNTSERQILSEIQKQMIEHYMDDVDVEIINNLGSTVLIVQTFLKDICN 62
Query: 62 LAVPVTFRSLKNKGIDIFMGYWY-PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
++ + + +++ +L K Y E+ +K Y V
Sbjct: 63 MSGAMYTGTSLTGELEMEPELDPKTALTKVKQGYKEKFDMKWYDSYGFENTYAFMVRRDF 122
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ + I+ K+ G++ + K+ + +
Sbjct: 123 AQKH--NLKKISDLKELAPTLKLGVDVAWIRRKGDGYEDFKAKYKFDFEK----AYPMEI 176
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ RNN + L + S ++ L ++ F V L+K P
Sbjct: 177 GLVYDAVRNNEMDIVLGYSTDGRISSYDLVILED--DLRIFPSYDACPVASYKLLEKYPK 234
Query: 241 ISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ ++ + K A ++ + + + Q V + L +
Sbjct: 235 LDTVINKLIGKIDSATMQKLNSMSDEQQIEPQNVAKIFLEEN 276
>gi|238027431|ref|YP_002911662.1| ABC glycine betaine/choline transporter, periplasmic ligand binding
protein [Burkholderia glumae BGR1]
gi|237876625|gb|ACR28958.1| ABC glycine betaine/choline transporter, periplasmic ligand binding
protein [Burkholderia glumae BGR1]
Length = 311
Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats.
Identities = 40/302 (13%), Positives = 86/302 (28%), Gaps = 26/302 (8%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILE-EILGYKTNIK 60
+I A F + A A + A T+ + + + +L+ LG I
Sbjct: 7 RRICAALTLAAAFGGTLAAGAAHADTITVASKIDTEGSLLGNLIAQVLKSHGLGVTDKIS 66
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L A P+ R+L ID++ Y + F +
Sbjct: 67 LGATPIVRRALVAGEIDVYPEYTGNAAFFFNKAGDPAWKNAARGYAEAKRLDYSANHLVW 126
Query: 103 VAENLQGAKYMLAVN-DVGFALGIKSYQDIAKYKKE-LGAKIYGIEPGNEGNQRILDMIN 160
+ + +AV + +K++ D ++ K+ +
Sbjct: 127 LTPAPANNTWGVAVYGPLAAQQHLKTFSDFGRWVASGGKVKLAASAEFVNSASALPSFEK 186
Query: 161 NNKFSLKGFR-LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F LK + L+ + + + + + + + + + L +
Sbjct: 187 AYGFKLKPDQLLVLSGGDTAATIRAAAAQTDGVNAAMVYGTDGAIAASGLVLLED--DKQ 244
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ V+R L P I+ L + + + I N + V L
Sbjct: 245 VQPVYAPAPVIREAVLKAHPQIADWLGPVFASLDLKTLQTLNSRIQINGEPAAHVAADYL 304
Query: 278 RT 279
+
Sbjct: 305 KA 306
>gi|241663964|ref|YP_002982324.1| glycine betaine ABC transporter substrate-binding protein
[Ralstonia pickettii 12D]
gi|240865991|gb|ACS63652.1| Substrate-binding region of ABC-type glycine betaine transport
system [Ralstonia pickettii 12D]
Length = 518
Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats.
Identities = 31/284 (10%), Positives = 71/284 (25%), Gaps = 28/284 (9%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKG 75
++ + A + P+R +T+ + + + L + F +LKN
Sbjct: 24 LAGSTSAIAEPPLRIGSKRFTESYVLGEILTQTATPRGPAEHVPGLGNTAIVFAALKNGS 83
Query: 76 IDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQ-----------------GAKYMLAVND 118
ID++ Y + + E+ + A L G + A+
Sbjct: 84 IDVYPDYLGTIAAEILHLPAEQAANPDRAALLADVNRGLAPMGLAAGVPLGFEDTYALAM 143
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ + +A ++ ++ K + L
Sbjct: 144 RDADAEREHIRTLADLATHPSLRLGLSHEFLGRADGWPAIVERYKLPQRPTGLDHGV--- 200
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
R + V + ++ L F + R+D +
Sbjct: 201 ----AYDALRASQVDVIDIYSTDAKIRREHLRVLDDP--AHVFPRYDAVLLYRADVAQRH 254
Query: 239 PNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
P + + + M + Q + L H
Sbjct: 255 PAQWQAISALTGRIGRDDMVAMNAAVELEGQSFSQAAQQFLAGH 298
>gi|121593476|ref|YP_985372.1| glycine betaine transporter periplasmic subunit [Acidovorax sp.
JS42]
gi|120605556|gb|ABM41296.1| Substrate-binding region of ABC-type glycine betaine transport
system [Acidovorax sp. JS42]
Length = 283
Score = 105 bits (262), Expect = 8e-21, Method: Composition-based stats.
Identities = 33/272 (12%), Positives = 77/272 (28%), Gaps = 35/272 (12%)
Query: 51 EILGYKTN-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQG 109
E LGY I+ + P ++ N +W P + + +
Sbjct: 5 EKLGYDVQPIQEVEYPTAHIAIGNGDATFMADHWNPLHADYYKNAGGDAKLYRRGTYSGN 64
Query: 110 AKYMLAVNDVGFALGIKSY---------QDIAKYKKELGAKIYGIEPGNEGNQRILDMIN 160
A ++ + + + A + G PG I ++
Sbjct: 65 AAQGYLIDKKTADAHGITNVEQLKDPKIAQLFDTNGDGKADLTGCTPGWGCEAMIEHHLD 124
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGE 216
+ + A + R P ++ +W P+ ++++ ++ +L
Sbjct: 125 AYGLR-NTVTHQQGTYSALIADTITRYRAGKPVLYYTWTPYWVSNELKPGKDVVWLEVPF 183
Query: 217 -----------------EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMM 259
+ GF V + + P ++L + ++ VA N
Sbjct: 184 SSLPGEQKGLDTRLPNGKNYGFVVNQQQIVANKAWAEANPAAAKLFEVMQLPVADINAQN 243
Query: 260 KLILNNKQDRQFVGRT---MLRTHPDLLKNWL 288
L+ + + R ++ H W+
Sbjct: 244 HLMSRGQNKAADIERHVNGWIKAHQKTFDGWV 275
>gi|182438400|ref|YP_001826119.1| putative ABC transporter solute-binding protein [Streptomyces
griseus subsp. griseus NBRC 13350]
gi|178466916|dbj|BAG21436.1| putative ABC transporter solute-binding protein [Streptomyces
griseus subsp. griseus NBRC 13350]
Length = 321
Score = 105 bits (262), Expect = 8e-21, Method: Composition-based stats.
Identities = 30/281 (10%), Positives = 75/281 (26%), Gaps = 29/281 (10%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGID 77
+ + +++ MT ++ + G + L ++ N D
Sbjct: 38 GEPLKGATLTVTSKNFSENIILGQMTGLVFKAA-GAEVLDRTNLPGSISAREAIINGDAD 96
Query: 78 IFMGYWYPSLEKFI----------------APYLEEGSIKLVAENLQGAKYMLAVN-DVG 120
Y F+ + + Y LA++
Sbjct: 97 AQWDYTGTGWITFLGHAEPIVDPKKQYEAVRDEDRGNGVVWLPPAPLDNTYALAISEKNN 156
Query: 121 FALGIKSYQDIAKYKKELGAKIYGI--EPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+K+ D+A K + + + M + + +
Sbjct: 157 AKYRLKTLSDVAALAKRDPGAVTICVENEFASRDDGLPGMEKRYGMRIPAGNIQKMDAGI 216
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
++Q+ ++ + + +N+ L + F + V+ +K
Sbjct: 217 IYTQVST---SDSCLLGEVFTTDGRIKAMNLDVLED--DKHFFPNYNASPVIHEATFEKY 271
Query: 239 PNISRLLK--NIKFSVALENEMMKLILNNKQDRQFVGRTML 277
P I+ LL K + + + + +D V + L
Sbjct: 272 PVIAELLDPLARKLTTEVAQTLNAKVDVEGEDPHEVAKDWL 312
>gi|299529135|ref|ZP_07042583.1| glycine betaine transporter periplasmic subunit [Comamonas
testosteroni S44]
gi|298722891|gb|EFI63800.1| glycine betaine transporter periplasmic subunit [Comamonas
testosteroni S44]
Length = 356
Score = 105 bits (262), Expect = 8e-21, Method: Composition-based stats.
Identities = 33/304 (10%), Positives = 84/304 (27%), Gaps = 36/304 (11%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRSLKNK 74
+S V + + T + L++ LGY + L P+ ++ N
Sbjct: 42 VSGDALPGQGITVLPVKSALAEENFQTLLVMKALQQ-LGYTVKPWEELDYPLIHVAVANG 100
Query: 75 GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKS------- 127
+W P +F + + GA ++ +
Sbjct: 101 DASFMANHWNPHHAEFYQQAGGDAKLSRKGVYAAGAAQGYMIDKKTADKHKITHLDQLKD 160
Query: 128 --YQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
+ + A + G G G + I + + A +
Sbjct: 161 PGLAALFDIDGDGKANLIGPNAGWGGEAVVAHQIKAFGLE-NTVSYTQGNYPALIADTLA 219
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI---------------------SGFGEA 224
+ P ++ +W P+ +++ L ++ GF
Sbjct: 220 RFKAGKPVLYYAWTPYWLSNVLRPGQEVVWLQVSRSSMPGVQAGTDTKLPNGRNYGFPLN 279
Query: 225 SVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV---GRTMLRTHP 281
+ Y V ++++ P +L + ++ + + +L+ + + ++ H
Sbjct: 280 NEYIVANKLWVEQNPAAGKLFEIMQIPINDISRQNQLLREGESKPADIHRHVDAWIKAHQ 339
Query: 282 DLLK 285
Sbjct: 340 QTFD 343
>gi|238784091|ref|ZP_04628106.1| hypothetical protein yberc0001_16610 [Yersinia bercovieri ATCC
43970]
gi|238715068|gb|EEQ07065.1| hypothetical protein yberc0001_16610 [Yersinia bercovieri ATCC
43970]
Length = 310
Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats.
Identities = 42/307 (13%), Positives = 90/307 (29%), Gaps = 31/307 (10%)
Query: 1 MYKIL---AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M K L + L +++ + + VR T+ + + +L+ G KT
Sbjct: 1 MAKTLPRSGIFALLAVMVAAFSGVSHAADTVRVGSKIDTEGSLLGNIIVQVLDAN-GIKT 59
Query: 58 --NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEG----------------- 98
+L V ++ IDI+ Y F
Sbjct: 60 TNKSQLGTTKVVRGAITAGEIDIYPEYTGNGAFFFSDEKDPAWKDSKAGYEKVKALDYEK 119
Query: 99 -SIKLVAENLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKKE-LGAKIYGIEPGNEGNQRI 155
+ ++ + +AV +K+ D+ K+ K+ E +
Sbjct: 120 NKLVWLSPAPANNTWTIAVRQDLAQANNLKTLDDLGKWINAGGKFKLAASAEFIERPDAL 179
Query: 156 LDMINNNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPG 214
F L +L+ + + I+ + +++ + L + L
Sbjct: 180 PAFQQAYGFKLDQDQLLSLAGGDTAVTIKAAAEQTSGVNAAMAYGTDGPVAALGLQTLED 239
Query: 215 GEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFV 272
+ + + ++R L + P I LL + ++ I QD + V
Sbjct: 240 PKGV--QPIYAPTPIIREATLKEHPTIPALLNPVFATLDGPTLQKLNARIAVEGQDAKRV 297
Query: 273 GRTMLRT 279
L+
Sbjct: 298 AANYLKE 304
>gi|309781445|ref|ZP_07676181.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Ralstonia sp. 5_7_47FAA]
gi|308919858|gb|EFP65519.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Ralstonia sp. 5_7_47FAA]
Length = 518
Score = 105 bits (261), Expect = 9e-21, Method: Composition-based stats.
Identities = 30/284 (10%), Positives = 70/284 (24%), Gaps = 28/284 (9%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKG 75
++ + A + P+R +T+ + + + L + F +LKN
Sbjct: 24 LACSTSAIAEPPLRIGSKRFTESYVLGEILTQTATPRGPAEHVPGLGNTAIVFAALKNGS 83
Query: 76 IDIFMGYWY----------------PSLEKFIAPYLEEGSIKLVAEN-LQGAKYMLAVND 118
ID++ Y P+ +A + + G + A+
Sbjct: 84 IDVYPDYLGTIAAEILHLPAEQAANPNQAALLADVNRGLAPMGLGAGVPLGFEDTYALAM 143
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ + +A ++ ++ K + L
Sbjct: 144 RDADAEREHIRTLADLATHPSLRLGLSHEFLGRADGWPAIVQRYKLPQRPTGLDHGV--- 200
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
R + V + ++ L F + R+D +
Sbjct: 201 ----AYDALRASQVDVIDIYSTDAKIRREHLRVLDDP--AHVFPRYDAVLLYRADVAQRH 254
Query: 239 PNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
P + + + M + Q + L H
Sbjct: 255 PAQWQAISALTGRIGRDDMVAMNAAVELEGQSFSQAAQQFLAGH 298
>gi|152971106|ref|YP_001336215.1| glycine betaine/choline ABC transporter membrane protein
[Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
gi|150955955|gb|ABR77985.1| putative glycine/betaine/choline transport protein, osmoprotection
(ABC superfamily, peri_bind) [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
Length = 305
Score = 105 bits (261), Expect = 9e-21, Method: Composition-based stats.
Identities = 40/282 (14%), Positives = 80/282 (28%), Gaps = 28/282 (9%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGIDIFM 80
+ PV+ T+ A M +LE G KT I+L PV ++ +DI+
Sbjct: 22 QAAEPVKVGSKIDTEGALLGNMIQQVLESH-GVKTINKIQLGTTPVVRGAIVAGELDIYP 80
Query: 81 GYWYPSLEKFIAPYLEEGS------------------IKLVAENLQGAKYMLAVNDVGFA 122
Y F + + + +AV
Sbjct: 81 EYTGNGAFFFKDENDPAWKNAQQGYEKVKRLDQEKHQLVWLTPAPANNTWTIAVRQDLAE 140
Query: 123 LGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ + K+ E + F+L +L+ + +
Sbjct: 141 KNKLTSLADLSRYLKQGGEFKLAASAEFIERPDALPAFEKAYGFNLNQNQLLSLAGGDTA 200
Query: 181 SQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
I+ + + +++ + L + L + + + VVR L P
Sbjct: 201 VTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV--QPIYAPTPVVREAVLKAYP 258
Query: 240 NISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
I+ L+ + ++ I QD + V L+
Sbjct: 259 QIADWLQPVFASLDEKTLQQLNARIAVEGQDAKRVAADYLQQ 300
>gi|318080419|ref|ZP_07987751.1| ABC transporter substrate-binding protein [Streptomyces sp.
SA3_actF]
Length = 582
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 33/283 (11%), Positives = 76/283 (26%), Gaps = 30/283 (10%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGID 77
+ + A +T+ A+ + + G + ++K+ D
Sbjct: 42 GEPLKGAKLTVASKEFTEQLVLGAIMGIAFKAA-GADVLDRTGIQGSIGAREAVKSGTAD 100
Query: 78 IFMGYWYPSLEKFI----------------APYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
Y ++ I Y LA+N
Sbjct: 101 AMYEYTGTGWITYLGHTKPIVDPHEQWVAVRDADRRNGITWGTPGPLNNTYALALNRKNE 160
Query: 122 ALG-IKSYQDIAKYKKELGAKIYGI--EPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
K+ D+A K+ + + + ++ R+ + +
Sbjct: 161 KKYRTKTLSDVAALSKKNPGAVTLCVEGEFAAREDGLNGLKRAYGMNIPNSRITKMAGGI 220
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+ + L++ + + F +V V + L++
Sbjct: 221 ----VYTQTAKGACVFGEVFTTDGRIKALHLAVMKD--DKHFFPNYNVAPVFHTKALEEH 274
Query: 239 PNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
P + R+L I K + A+ E+ + + +D V R L
Sbjct: 275 PQMERVLAPITKKLTNAVARELNAKVDVDGEDPHDVARNWLEE 317
>gi|309810199|ref|ZP_07704044.1| ABC transporter, substrate-binding protein, QAT family
[Lactobacillus iners SPIN 2503V10-D]
gi|308169471|gb|EFO71519.1| ABC transporter, substrate-binding protein, QAT family
[Lactobacillus iners SPIN 2503V10-D]
Length = 505
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 32/307 (10%), Positives = 89/307 (28%), Gaps = 36/307 (11%)
Query: 1 MYKILAVCLFLTTFSISY------ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
M+ I+ + + + ++ + A + M ++LE+
Sbjct: 207 MFLIIVLFFGIVSLGAYSLNSIKIGSNSAKSEQIIIASKDDSQFDIIANMYKILLEKNKK 266
Query: 55 YKTNIKLLAVP-VTFRSLKNKGIDIFMG----------------YWYPSLEKFIAPYLEE 97
Y + L+ IDI+ L ++ L +
Sbjct: 267 YHVIFSRRKDDRQILKELRKGNIDIYPEETRKVFSLIDNSDKKFANIDELYRYTRDILYK 326
Query: 98 GSIKLVAEN-LQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
+ + ++A + I D+ KYK +L +++ + + +
Sbjct: 327 QDLIYMTPMAYHNNYVLIADKEFAKQNKITKISDLQKYKSKLVVEMF--KDFADSSNGYE 384
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ N K + + Q + + + P N+ L
Sbjct: 385 GLKNVYKLDFPKMSVTTSD------QCYEKLKKRQVNLIAATSNDPEIKRNNLLILND-- 436
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F V ++ + K + ++++ + K + ++ + ++ V +
Sbjct: 437 DKYYFVPYQVAPIITKKFAKKHHQVVKIIEKLAGKITDDEIIQLETQVKLEHKNAAKVAK 496
Query: 275 TMLRTHP 281
L+ +
Sbjct: 497 AFLQRNK 503
>gi|51595580|ref|YP_069771.1| ABC type periplasmic choline/glycine/betaine binding protein
[Yersinia pseudotuberculosis IP 32953]
gi|145599769|ref|YP_001163845.1| hypothetical protein YPDSF_2500 [Yersinia pestis Pestoides F]
gi|153949609|ref|YP_001401750.1| quaternary amine ABC transporter substrate-binding protein
[Yersinia pseudotuberculosis IP 31758]
gi|170025089|ref|YP_001721594.1| glycine betaine ABC transporter substrate-binding protein [Yersinia
pseudotuberculosis YPIII]
gi|186894644|ref|YP_001871756.1| glycine betaine ABC transporter substrate-binding protein [Yersinia
pseudotuberculosis PB1/+]
gi|51588862|emb|CAH20476.1| ABC type periplasmic choline/glycine/betaine binding protein
[Yersinia pseudotuberculosis IP 32953]
gi|145211465|gb|ABP40872.1| hypothetical protein YPDSF_2500 [Yersinia pestis Pestoides F]
gi|152961104|gb|ABS48565.1| quaternary amine uptake ABC transporter (QAT) family,
substrate-binding protein [Yersinia pseudotuberculosis
IP 31758]
gi|169751623|gb|ACA69141.1| Substrate-binding region of ABC-type glycine betaine transport
system [Yersinia pseudotuberculosis YPIII]
gi|186697670|gb|ACC88299.1| Substrate-binding region of ABC-type glycine betaine transport
system [Yersinia pseudotuberculosis PB1/+]
Length = 310
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 50/303 (16%), Positives = 99/303 (32%), Gaps = 31/303 (10%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
+I AV + + S + AD+ VR T+ + + +LE G KT +
Sbjct: 9 RIFAVAAIMLSASSGISHAADN---VRVGSKIDTEGSLLGNIIVQVLEAN-GIKTTNKSQ 64
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPS------------------LEKFIAPYLEEGSIKL 102
L A V ++ IDI+ Y EK A E+ +
Sbjct: 65 LGATKVVRGAITAGEIDIYPEYTGNGAFFFSDEQDPAWKSAKAGYEKVKALDYEKNKLVW 124
Query: 103 VAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKEL-GAKIYGIEPGNEGNQRILDMIN 160
++ + +AV A +++ D+ K+ K+ E +
Sbjct: 125 LSPAPANNTWTIAVRKDLATANNLRTLDDLGKWINGGGQFKLAASAEFIERPDALPAFQQ 184
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F+L +L+ + + I+ + +++ + L + L + +
Sbjct: 185 AYGFTLNQDQLLSLAGGDTAVTIKAAAEQISGVNAAMAYGTDGPVAALGLQTLEDTKGV- 243
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ ++R L PNI LL + ++ I QD + V L
Sbjct: 244 -QPIYAPAPIIREVTLKAHPNIPALLNPVFATLDGPTLQKLNARIAVEGQDAKKVAANYL 302
Query: 278 RTH 280
+ +
Sbjct: 303 KDN 305
>gi|168236331|ref|ZP_02661389.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|194738120|ref|YP_002115254.1| amine ABC transporter periplasmic amine-binding protein [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|194713622|gb|ACF92843.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|197290577|gb|EDY29932.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
Length = 305
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 47/314 (14%), Positives = 87/314 (27%), Gaps = 36/314 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--N 58
+ K+ L L + A PV T+ A M +LE G KT
Sbjct: 3 ISKLWVSSLALLATVSLPLQAAS---PVTVGSKIDTEGALLGNMILQVLESH-GVKTVNK 58
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------I 100
I+L PV ++ +DI+ Y F +
Sbjct: 59 IQLGTTPVVRGAITAGELDIYPEYTGNGAFFFKDENDPAWKNAKQGFEKVKKLDAEQNKL 118
Query: 101 KLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDM 158
+ + +AV S + K+ E +
Sbjct: 119 VWLMPAPANNTWTIAVRQDIAEKNKLSSLADLSRYLKEGGTFKLAASAEFIERADALPAF 178
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEE 217
F+L +L+ + + I+ + + +++ + L + L +
Sbjct: 179 EKAYDFTLNQNQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPKG 238
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
+ + VVR L P I+ L+ + ++ I D + V
Sbjct: 239 V--QPIYAPAPVVRESVLQAYPQIADWLQPVFASLDEKTLQQLNARIAVEGLDAKKVAAD 296
Query: 276 MLRTHPDLLKNWLI 289
LR K W+
Sbjct: 297 YLRQ-----KGWVK 305
>gi|238895693|ref|YP_002920428.1| putative ABC-type proline/glycine betaine transport system
periplasmic component [Klebsiella pneumoniae NTUH-K2044]
gi|262040144|ref|ZP_06013397.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|238548010|dbj|BAH64361.1| putative ABC-type proline/glycine betaine transport system
periplasmic component [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|259042497|gb|EEW43515.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 305
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 40/282 (14%), Positives = 80/282 (28%), Gaps = 28/282 (9%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGIDIFM 80
+ PV+ T+ A M +LE G KT I+L PV ++ +DI+
Sbjct: 22 QAAEPVKVGSKIDTEGALLGNMIQQVLESH-GVKTINKIQLGTTPVVRGAIVAGELDIYP 80
Query: 81 GYWYPSLEKFIAPYLEEGS------------------IKLVAENLQGAKYMLAVNDVGFA 122
Y F + + + +AV
Sbjct: 81 EYTGNGAFFFKDENDPAWKNAQQGYEKVKRLDQEKHQLVWLTPAPANNTWTIAVRQDLAE 140
Query: 123 LGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ + K+ E + F+L +L+ + +
Sbjct: 141 KNKLTSLADLSRYLKQGGEFKLAASAEFIERPDALPAFEKAYGFNLNQNQLLSLAGGDTA 200
Query: 181 SQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
I+ + + +++ + L + L + + + VVR L P
Sbjct: 201 VTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV--QPIYAPTPVVREAVLKAYP 258
Query: 240 NISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
I+ L+ + ++ I QD + V L+
Sbjct: 259 QIADWLQPVFASLDEKTLQQLNARIAVEGQDAKRVAADYLQQ 300
>gi|325912667|ref|ZP_08175050.1| ABC transporter, substrate-binding protein, QAT family
[Lactobacillus iners UPII 60-B]
gi|325478088|gb|EGC81217.1| ABC transporter, substrate-binding protein, QAT family
[Lactobacillus iners UPII 60-B]
Length = 505
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 32/307 (10%), Positives = 88/307 (28%), Gaps = 36/307 (11%)
Query: 1 MYKILAVCLFLTTFSISY------ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
M+ I+ + + + ++ + A + M ++LE+
Sbjct: 207 MFLIIVLLFGIVSLGAYSLNSIKIGSNSAKSEQIIIASKDDSQFDIIANMYKILLEKNKK 266
Query: 55 YKTNIKLLAVP-VTFRSLKNKGIDIFMG----------------YWYPSLEKFIAPYLEE 97
Y + L+ IDI+ L ++ L +
Sbjct: 267 YHVIFSRRKDDRQILKELRKGNIDIYPEETRKVFSLIDNSDKKFANIDELYRYTRDILYK 326
Query: 98 GSIKLVAEN-LQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
+ + ++A + I D+ KYK +L ++ + + +
Sbjct: 327 QDLIYMTPMAYHNNYVLIADKEFAKQNKITKISDLKKYKSKLVVGMF--KDFADSSNGYE 384
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ N K + + Q + + + P N+ L
Sbjct: 385 GLKNVYKLDFPKMSVTTSD------QCYEKLKKRQVNLIAATSNDPEIKRNNLLILND-- 436
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F V ++ + K + ++++ + K + ++ + ++ V +
Sbjct: 437 DKYYFVPYQVAPIITKRFAKKHHQVVKIIEKLAGKITDDEIIQLETQVKFEHKNAAKVAK 496
Query: 275 TMLRTHP 281
L+ +
Sbjct: 497 AFLQRNK 503
>gi|161502687|ref|YP_001569799.1| hypothetical protein SARI_00734 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160864034|gb|ABX20657.1| hypothetical protein SARI_00734 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 305
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 46/314 (14%), Positives = 87/314 (27%), Gaps = 36/314 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--N 58
+ K+ L L + A PV T+ A + +LE G KT
Sbjct: 3 ISKVWVSSLALLATVSLPLQAAS---PVTVGSKIDTEGALLGNIILQVLESH-GIKTVNK 58
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------I 100
I+L PV ++ +DI+ Y F +
Sbjct: 59 IQLGTTPVVRGAITAGELDIYPEYTGNGAFFFKDENDPAWKNAKQGFEKVKKWDAEQNKL 118
Query: 101 KLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDM 158
+ + +AV S + K+ E +
Sbjct: 119 VWLTPAPANNTWTIAVRQDMAEKNKLSSLADLSRYLKEGGTFKLAASAEFIERADALPAF 178
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEE 217
F+L +L+ + + I+ + + +++ + L + L +
Sbjct: 179 EKAYDFTLNQNQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPKG 238
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
+ + VVR L P I+ L+ + ++ I D + V
Sbjct: 239 V--QPIYAPAPVVRESVLQAYPQIADWLQPVFASLDEKTLQQLNARIAVEGLDAKKVATD 296
Query: 276 MLRTHPDLLKNWLI 289
LR K W+
Sbjct: 297 YLRQ-----KGWVK 305
>gi|330883304|gb|EGH17453.1| glycine betaine/L-proline ABC transporter periplasmic
substrate-binding protein [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 97
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 51/88 (57%)
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+G+A++YT R Y +C N+ +LLKN+ F++ +E+ +M +L++K + ++
Sbjct: 8 NYGQATIYTNTRKGYSQECSNVGQLLKNLSFTLDMESTLMGNVLDDKMKPDAAAKAWIKK 67
Query: 280 HPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+P +L WL GVTT DG+ + +
Sbjct: 68 NPQVLDTWLSGVTTVDGKPGLEAAKAKL 95
>gi|256826380|ref|YP_003150340.1| glycine betaine/choline ABC transporter periplasmic glycine
betaine/choline-binding (lipo)protein [Kytococcus
sedentarius DSM 20547]
gi|256689773|gb|ACV07575.1| periplasmic glycine betaine/choline-binding (lipo)protein of an
ABC-type transport system (osmoprotectant binding
protein) [Kytococcus sedentarius DSM 20547]
Length = 300
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 32/279 (11%), Positives = 84/279 (30%), Gaps = 25/279 (8%)
Query: 18 YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPVTFRSLKNKG 75
A + + V +T+ + + L++ G + +++ + +L++
Sbjct: 30 GATEEGDASKVTIGSGNFTESTILAEVYAKALQDD-GVEVEKKLEIGSRETYLPALQDGS 88
Query: 76 IDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK 135
ID+ Y F + ++ A + L V + A +
Sbjct: 89 IDLIPEYIGTLATYFDKELTVTDADEVYAALEKSLPEGLEVLEYSEAENADNVVVTRATA 148
Query: 136 KELGAKIY------------GIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
E G + G P + + + + + L+ + E S + +
Sbjct: 149 DEQGLEKISDLEGKAGDMTLGGPPEWKERAQGVPGLK-KVYGLEFAKFRELSAGGNVTA- 206
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
+ N + P + L +++ +V ++ S+ D +S
Sbjct: 207 -QALENGQIDAANIFTTDPSIVQKDFVILEDDKDLFS--AQNVVPLLSSEVADDA--VSE 261
Query: 244 LLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
L + + +M I + + + V + +
Sbjct: 262 SLNKVSSELTAEDLAQMQIDIT-DGKTPEEVASAWVEEN 299
>gi|73541145|ref|YP_295665.1| binding-protein dependent transport system inner membrane protein
[Ralstonia eutropha JMP134]
gi|72118558|gb|AAZ60821.1| Binding-protein-dependent transport systems inner membrane
component:Substrate-binding region of ABC-type glycine
betaine transport system [Ralstonia eutropha JMP134]
Length = 493
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 32/288 (11%), Positives = 74/288 (25%), Gaps = 21/288 (7%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
+A C +++ A A +R +T+ + + + + L
Sbjct: 1 MAACFAGMLIALASACQAQGGDSLRVGSKRFTESYILGELLTQ---AAGNARHHAGLGNS 57
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIA---PYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ F +L++ ID++ Y + + + GA L +
Sbjct: 58 AIVFEALRSGSIDLYPDYTGTLASEILKLPPGATLAQINDALRPMGLGAGIALGFENTYA 117
Query: 122 ALGIKSY----QDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
++ + ++ ++ ++ + K L
Sbjct: 118 LAVQETRAPGLRRLSDLARQSQLRMGLSHEFLGRADGWPGLARRYGLPQKPVGLDHGV-- 175
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDK 237
V + + L ++ F V R D +
Sbjct: 176 -----AYEALAAGQVDVIDIYSTDAKIRKYQLRVLED--DLHFFPRYDAVVVYRLDVPRR 228
Query: 238 CPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDL 283
P + L+ + + S A M + Q + R L H
Sbjct: 229 FPAAWQALQALAGRISAADMVAMNAAAEIDGQSFAAIARDFLSGHAAK 276
>gi|328957279|ref|YP_004374665.1| glycine betaine/carnitine/choline-binding protein [Carnobacterium
sp. 17-4]
gi|328673603|gb|AEB29649.1| glycine betaine/carnitine/choline-binding protein [Carnobacterium
sp. 17-4]
Length = 314
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 32/305 (10%), Positives = 75/305 (24%), Gaps = 31/305 (10%)
Query: 1 MYKI------LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
M KI L L++ S+ + + T+ + ++E +
Sbjct: 1 MKKIQKIAALFLAALLLSSCSLPGLGSGFNEEGITITGGSTTEQQIVGYIVEGMVEHYID 60
Query: 55 YKTNIKL--LAVPVTFRSLKNKGIDIFM---------------GYWYPSLEKFIAPYLEE 97
I + + ++L ++ P + +
Sbjct: 61 IDAQIVNNLGSSSLNHQALIGGDANVAAIKYTGTSLTGELGQDPITDPEVALDLVVEGFA 120
Query: 98 GSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILD 157
G A I+ + G G++
Sbjct: 121 AEFDQKWFPTYGFANTYAFMVTQELADQYDLVTISDLEDIAGELNAGVDTSWIQRVGDGY 180
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
+ + R+ + + V L + ++ L +
Sbjct: 181 DAFLDTYGFDFNRVYP----MQIGLVYNALQAGEMDVVLGYSTDGRIKSYDLVVLED--D 234
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRT 275
F V + L+ P ++ +L +K S E+ + NN + + V
Sbjct: 235 KRLFPPYDASPVATFEVLEAYPELNEVLTKLKNTISDEKMQELNYISDNNLIEPKVVADN 294
Query: 276 MLRTH 280
L+ +
Sbjct: 295 FLKEN 299
>gi|317047439|ref|YP_004115087.1| glycine betaine ABC transporter substrate-binding protein [Pantoea
sp. At-9b]
gi|316949056|gb|ADU68531.1| Substrate-binding region of ABC-type glycine betaine transport
system [Pantoea sp. At-9b]
Length = 302
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 40/298 (13%), Positives = 86/298 (28%), Gaps = 28/298 (9%)
Query: 9 LFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPV 66
L A A + PVR T+ + + +L + G T I+L V
Sbjct: 6 LLGLIALAMSATAAQAADPVRVGSKIDTEGSLLGNIILQVLNKH-GVPTVNKIQLGTTQV 64
Query: 67 TFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKLVAENLQ 108
++ +DI+ Y F + +
Sbjct: 65 VRGAITAGALDIYPEYTGNGAFFFNDEKDPAWKNAQQGYEKVKTLDAEKNHLVWLTPAPA 124
Query: 109 GAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMINNNKFSL 166
+ +AV + K K+ E + + F L
Sbjct: 125 NNTWTIAVRSDVAEKNQLTSLADLSRYLKKGGTFKLAASAEFIERSDALPAFEKAYDFKL 184
Query: 167 KGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEAS 225
+L+ + + I+ + + +++ + L + L + + +
Sbjct: 185 DQSQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLTDPKGV--QPIYA 242
Query: 226 VYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTHP 281
V+R L + P+I+ L+ + K ++ I + QD V + L+ +
Sbjct: 243 PTPVIRDVVLKQYPDIANWLQPVFSKLDEKTLQQLNAQIAVDGQDASQVAQQWLQQNK 300
>gi|307244072|ref|ZP_07526191.1| ABC transporter, substrate-binding protein, QAT family
[Peptostreptococcus stomatis DSM 17678]
gi|306492596|gb|EFM64630.1| ABC transporter, substrate-binding protein, QAT family
[Peptostreptococcus stomatis DSM 17678]
Length = 553
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 32/291 (10%), Positives = 80/291 (27%), Gaps = 30/291 (10%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGY-KTNIKLLAVPVT--F 68
T S+ S + A ++ + + ++E K +I F
Sbjct: 248 TACSLPGLEGDTSKGDIVIAGGSTSERQIVSQIQKQMIEHYYPKRKVSIINNLSSSMLLF 307
Query: 69 RSLKNKGIDIFMGYWYPSL-----------------EKFIAPYLEEGSIKLVAENLQGAK 111
+++ ++ + + +K + + +E + +
Sbjct: 308 QAMDGGHANLASVMYTGTSLTGELKMEPTTDTDFALKKVVNGFYKEFGLVWLPTYGFENT 367
Query: 112 YMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
Y+ V + + ++ KK + G++ + K+ +
Sbjct: 368 YVFMVREDFAKKHKL--EKVSDLKKISKDIMAGVDTSWINRKGDGYEAFKEKYGFDFKSI 425
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVR 231
+ S + + V L + + L ++ F VV
Sbjct: 426 LPMD----VSLVYSAVNSGKMDVVLGFSTDGRIKAYGLKLLED--DLRLFPPYDASPVVD 479
Query: 232 SDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
L + P I +L + E+ L +K + V L+ +
Sbjct: 480 KKILKEHPEIVDVLLKLDGAIPSEKMQELNNLCDGHKIEANVVAERFLKAN 530
>gi|221209334|ref|ZP_03582315.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia multivorans CGD1]
gi|221170022|gb|EEE02488.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia multivorans CGD1]
Length = 307
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 45/301 (14%), Positives = 92/301 (30%), Gaps = 32/301 (10%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
+IL + L + + DA PV + T+ + + +L+ G I
Sbjct: 8 RILGLALAASVVAPGAHADA----PVVVSSKIDTEGNLLGNVIAQVLKAH-GIPVTEKIA 62
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L A P+ ++L + IDI+ Y + F +
Sbjct: 63 LGATPIVRKALTSGEIDIYPEYTGNAAFFFNKADDPVWKNASQGYDTAKQLDYAANHLVW 122
Query: 103 VAENLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKK-ELGAKIYGIEPGNEGNQRILDMIN 160
+A + +AV +K++ D K+ K+ +
Sbjct: 123 LAPAPANNTWGVAVLSSVAQARHLKTFSDFGKWVAGGGNVKLAASAEFVNSASALPSFEK 182
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F LK +L+ S + + I+ + + + + + L +
Sbjct: 183 AYGFKLKPDQLVVLSGGDTAATIKAAANQTDGVNAAMVYGTDGGIASSGLTVLDD--DKH 240
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ V+R L P I+ LK + + + I N + V ++ L
Sbjct: 241 VQPVYAPAPVIREAVLKAHPQIADYLKPVFASLDLKTLQMLNARIQINGESAAGVAKSYL 300
Query: 278 R 278
+
Sbjct: 301 K 301
>gi|313887828|ref|ZP_07821508.1| glycine betaine/carnitine/choline-binding protein [Peptoniphilus
harei ACS-146-V-Sch2b]
gi|312846171|gb|EFR33552.1| glycine betaine/carnitine/choline-binding protein [Peptoniphilus
harei ACS-146-V-Sch2b]
Length = 325
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 25/281 (8%), Positives = 70/281 (24%), Gaps = 29/281 (10%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVT--FRSLKNKGIDIF 79
++ T V A T+ + ++E ++ ++ ++I
Sbjct: 28 GNTKTSVVVATGSNTERQILGEIVKQMIEHHSDIDVSLITNLSSSVLNHIAMLKGDVNIV 87
Query: 80 -MGYWYPSLEKFI----------------APYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
Y +L + Y + Y V
Sbjct: 88 GAMYTGTALSGELGMDPIKDPKEAEKVVMQEYYKRWERYWYPSFGFDNTYAFMVTKKFAE 147
Query: 123 LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ ++ +K G++ + + +
Sbjct: 148 ENKL--KKVSDLEKIKDKLEVGVDTAWIKREGDGYKAFKEIYGFDFKTIYPMD----IGL 201
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ + + L + S ++ L + F V+ ++K P +
Sbjct: 202 VYTALASGEMDLVLGYSTDGKISSYDLVVLED--DKRLFPPYDCSPVLSKAIVEKYPELE 259
Query: 243 RLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTHP 281
++ + + S E+ + + + + V L+ H
Sbjct: 260 TIMMKLVGQISSKDMQELNRQADEDLEMPKIVAENFLKKHK 300
>gi|312875571|ref|ZP_07735572.1| ABC transporter, substrate-binding protein, QAT family
[Lactobacillus iners LEAF 2053A-b]
gi|311088825|gb|EFQ47268.1| ABC transporter, substrate-binding protein, QAT family
[Lactobacillus iners LEAF 2053A-b]
Length = 505
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 33/307 (10%), Positives = 87/307 (28%), Gaps = 36/307 (11%)
Query: 1 MYKILAVCLFLTTFSISY------ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
M+ I+ + + + ++ + A + M ++LE+
Sbjct: 207 MFLIIVLFFGIVSLGAYSLNSIKIGSNSAKSEQIIIASKDDSQFDIIANMYKILLEKNKK 266
Query: 55 YKTNIKLLAVP-VTFRSLKNKGIDIFMG----------------YWYPSLEKFIAPYLEE 97
Y + L+ IDI+ L ++ L +
Sbjct: 267 YHVIFSRRKDDRQILKELRKGNIDIYPEETRKVFSLIDNSDKKFANIDELYRYTRDILYK 326
Query: 98 GSIKLVAEN-LQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
+ + ++A + I D+ KYK +L ++ + +
Sbjct: 327 QDLIYMTPMAYHNNYVLIADKEFAKQNKITKISDLQKYKSKLVVGMF--KDFAYSSNGYE 384
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ + K + A Q R + + P N+ L
Sbjct: 385 GLKDVYKLDFPKMSVTTAD------QCYEKLRKRQVNLIAAKSNDPEIKKNNLLILND-- 436
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F V ++ + K + ++++ + K + ++ + ++ V +
Sbjct: 437 DKYYFVPYQVAPIITKRFAKKHHQVVKIIEKLAGKITDDEMIQLETQVKLEHKNAAKVAK 496
Query: 275 TMLRTHP 281
L+ +
Sbjct: 497 AFLQRNK 503
>gi|322833743|ref|YP_004213770.1| Substrate-binding region of ABC-type glycine betaine transport
system [Rahnella sp. Y9602]
gi|321168944|gb|ADW74643.1| Substrate-binding region of ABC-type glycine betaine transport
system [Rahnella sp. Y9602]
Length = 312
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 51/299 (17%), Positives = 90/299 (30%), Gaps = 30/299 (10%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLA 63
L L + A+ AD VR T+ + + +LE G T ++L
Sbjct: 13 VAALALASVLSFSAQAADDA--VRVGSKIDTEGSLLGNIIIQVLEAN-GIHTTNKLQLGT 69
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEG------------------SIKLVAE 105
V ++ IDI+ Y F I +
Sbjct: 70 TKVVRGAITAGEIDIYPEYTGNGAFFFSDDKDPAWKNAQAGFDKVKKLDYDQNKIVWLNP 129
Query: 106 NLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKE-LGAKIYGIEPGNEGNQRILDMINNNK 163
+ + +AV A +KS D+ KY K+ E + N
Sbjct: 130 SPANNTWTIAVRQDVASAHNLKSLGDLGKYISSGGDFKLAASAEFIERPDALPAFENAYG 189
Query: 164 FSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
F L +L+ + + I+ + +++ + L + L + +
Sbjct: 190 FKLNQAQLLSLAGGDTAVTIKAAAEQTSGVNAAMAYGTDGPVAALGLQTLEDPKGV--QP 247
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+ V+R L PNI LLK + + I + QD + V L+
Sbjct: 248 IYAPAPVIREAALKAHPNIPDLLKPVFASLDTKTLQGLNAKIAVDGQDAKKVAAKYLQE 306
>gi|288934375|ref|YP_003438434.1| substrate-binding region of ABC-type glycine betaine transporter
[Klebsiella variicola At-22]
gi|288889104|gb|ADC57422.1| Substrate-binding region of ABC-type glycine betaine transport
system [Klebsiella variicola At-22]
Length = 305
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 41/282 (14%), Positives = 79/282 (28%), Gaps = 28/282 (9%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGIDIFM 80
+ PV+ T+ A M +LE G KT I+L PV ++ +DI+
Sbjct: 22 QAAEPVKVGSKIDTEGALLGNMIQQVLESH-GVKTINKIQLGTTPVVRGAIVAGELDIYP 80
Query: 81 GYWYPSLEKFIAPYLEEGS------------------IKLVAENLQGAKYMLAVNDVGFA 122
Y F + + + +AV
Sbjct: 81 EYTGNGAFFFKDENDPAWKHAQQGYEKVKRLDQEKHQLVWLTPAPANNTWTIAVRQDLAE 140
Query: 123 LGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ + K+ E + F+L +L+ + +
Sbjct: 141 KNHLTSLADLSRYLKQGGEFKLAASAEFIERPDALPAFEKAYGFNLNQNQLLSLAGGDTA 200
Query: 181 SQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
I+ + + +++ + L + L + + + VVR L P
Sbjct: 201 VTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV--QPIYAPTPVVREAVLKAYP 258
Query: 240 NISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
I LK + ++ I QD + V L+
Sbjct: 259 QIDDWLKPVFASLDEKTLQQLNARIAVEGQDAKRVAADYLQQ 300
>gi|302557622|ref|ZP_07309964.1| secreted substrate-binding protein [Streptomyces griseoflavus
Tu4000]
gi|302475240|gb|EFL38333.1| secreted substrate-binding protein [Streptomyces griseoflavus
Tu4000]
Length = 319
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 35/278 (12%), Positives = 71/278 (25%), Gaps = 27/278 (9%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--LLAVPVTFRSLKNKGID 77
+ V + + + L G K + K + + T+ +KN I
Sbjct: 45 GEKAEAGTVVVGSNNFAESTLLADIYGEALRAK-GLKVDYKHNIGSRETTYGLMKNGSIT 103
Query: 78 IFMGYWYP--------------SLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+ Y A + + L+ + K +A+N
Sbjct: 104 VLPEYNGSLLAYLDPEAGQESAEAVNEAAKAKLDKKLTLLESSPAEDKDSVALNAETAKK 163
Query: 124 GIKSYQDIAKYKKELGAKIY--GIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
+ + K+ +I G Q + + + K +
Sbjct: 164 HGLTAESTLADLKDAAPEIIIGGSPEFQTRQQGLKGLESVYGL--KFKSFKALDAGGPLT 221
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRS-DYLDKCPN 240
Q N + P L E + GF A+V +V +
Sbjct: 222 Q--AALTGNEVQAADVFTTDPTIVKEKFVVLKDPENLFGF--ANVTPLVSKEGLPQEGVE 277
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLR 278
+ K ++ + K+D V + L+
Sbjct: 278 ALNAVSA-KLDTETLLDLDAQVQLEKKDPLDVAKAWLK 314
>gi|325528140|gb|EGD05335.1| glycine betaine/proline transport system substrate-binding protein
[Burkholderia sp. TJI49]
Length = 106
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 35/101 (34%), Positives = 62/101 (61%), Gaps = 3/101 (2%)
Query: 209 IHYLPGGEEIS--GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNK 266
++YL GG+ +GEA VYT+ D++ +CPN +L+ N++F+ LEN++M+ ++ NK
Sbjct: 5 MNYLSGGDAAFGPNYGEARVYTLTSPDFMTRCPNAGKLVTNLRFTTQLENQLMQSVM-NK 63
Query: 267 QDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ L+ +P +L WL GV TFDG+D ++ ++
Sbjct: 64 TKPTDAAKAYLKKNPQVLDAWLAGVKTFDGKDGLPAVKAYL 104
>gi|188585643|ref|YP_001917188.1| Substrate-binding region of ABC-type glycine betaine transport
system [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179350330|gb|ACB84600.1| Substrate-binding region of ABC-type glycine betaine transport
system [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 298
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 31/154 (20%), Positives = 70/154 (45%), Gaps = 2/154 (1%)
Query: 135 KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAV 194
+ +I GI+ G E + + + ++ L + L+E+SE ++I + V
Sbjct: 35 PERFDNEIVGIDSGAEIMGTVENEVMV-EYGLDEYDLVESSEAGMITEIDSRVDDEEWVV 93
Query: 195 FLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVAL 254
+ W PH + ++ +L + I G E ++ + R+ + D P +S+ L+N +
Sbjct: 94 GIGWTPHWKIPEYDMKFLEDPKGIFGEAE-NIKALSRAGFTDDMPEVSQTLQNFYLTEDQ 152
Query: 255 ENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
E+M L+ + + + V + + D++ W+
Sbjct: 153 LGELMALVEDTDSNEREVVKEWAEDNQDVISEWV 186
Score = 73.3 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 23/106 (21%), Positives = 42/106 (39%), Gaps = 1/106 (0%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGY 82
V WTD A+T + + +LEE + Y+ ++++ V F L + D +
Sbjct: 192 GEGETVELLYNNWTDAIASTNLIAYVLEEEMNYEVEMEMVDVAFVFEGLASGDYDAMVCA 251
Query: 83 WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSY 128
W P + + ++ + +GAK L V D I+
Sbjct: 252 WLPLTQANYWEEYGD-DLEDLGPIFEGAKLGLVVPDYVEIDSIEEM 296
>gi|297203152|ref|ZP_06920549.1| ABC transporter substrate-binding protein [Streptomyces sviceus
ATCC 29083]
gi|197717478|gb|EDY61512.1| ABC transporter substrate-binding protein [Streptomyces sviceus
ATCC 29083]
Length = 321
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 40/281 (14%), Positives = 74/281 (26%), Gaps = 29/281 (10%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGID 77
A S V + + + L+ G K K + T+ LKN I
Sbjct: 47 GGAASGDTVVVGSNNFAESILLADIYGEALKAK-GIKVTYKPNIGSRETTYGLLKNGSIT 105
Query: 78 IFMGYWYPSLEKFIAPYLE--------------EGSIKLVAENLQGAKYMLAVNDVGFAL 123
+ Y L + + + L+ K + VN
Sbjct: 106 VLPEYNGSLLAYLDKDAKQESAEGVNAAVKAKLDSKLTLLDSAPAEDKDSVTVNAATAKQ 165
Query: 124 GIKSYQDIAKYKKELGAKIY--GIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
+ + K + + G Q +L + + K +
Sbjct: 166 YHLTTESTLADLKSIAPDLVIGGSPEFQTRQQGLLGLESQYGL--KFKSFKALDAGGPLT 223
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNI 241
Q + N + P + L + + GF A+V +V L K
Sbjct: 224 Q--AALKKNTVQAADIFTTDPTITKEKFVVLQDPKNLFGF--ANVTPLVYKSGLSKEGVA 279
Query: 242 SRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ L + K M + D V + L+++
Sbjct: 280 A--LNAVSAKLDTKALLAMDSQVQLENGDPLDVAKAWLKSN 318
>gi|291616803|ref|YP_003519545.1| YehZ [Pantoea ananatis LMG 20103]
gi|291151833|gb|ADD76417.1| YehZ [Pantoea ananatis LMG 20103]
gi|327393230|dbj|BAK10652.1| transport system permease protein YehZ [Pantoea ananatis AJ13355]
Length = 341
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 46/283 (16%), Positives = 88/283 (31%), Gaps = 28/283 (9%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGIDIF 79
A + PVR T+ + + ++LE+ G KT I+L A V ++ +DI+
Sbjct: 58 AHAADPVRVGSKIDTEGSLLGNVILLVLEKH-GVKTVNKIQLGATQVVRGAITAGELDIY 116
Query: 80 MGYWYPSLEKFIAPYLEEGS------------------IKLVAENLQGAKYMLAVNDVGF 121
Y F + + + +AV +
Sbjct: 117 PEYTGNGAFFFNDEKDSAWKHAREGYEKVKKLDAEKNHLVWLTPAPANNTWTIAVRNDVA 176
Query: 122 ALGIKSYQDI--AKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+ D A KK K+ E + + F+LK +L+ + +
Sbjct: 177 EKNHLNSLDDLSAYLKKGGTFKLAASAEFIERSDALPAFEKAYGFTLKQDQLLSLAGGDT 236
Query: 180 FSQI-RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
I Q+ + +++ + L + L + + + VVR L
Sbjct: 237 AVTIGAAAQQTSGVNAAMAYGTDGPVAALGLKTLSDPKGV--QPIYAPAPVVREAVLQAY 294
Query: 239 PNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
P ++ LK + ++ I QD V + L
Sbjct: 295 PQMAAWLKPVFSALDEKTLQQLNAKIAVEGQDASSVAKAWLEQ 337
>gi|215487353|ref|YP_002329784.1| predicted transporter subunit: periplasmic-binding component of ABC
superfamily [Escherichia coli O127:H6 str. E2348/69]
gi|215265425|emb|CAS09826.1| predicted transporter subunit: periplasmic-binding component of ABC
superfamily [Escherichia coli O127:H6 str. E2348/69]
Length = 305
Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 43/312 (13%), Positives = 88/312 (28%), Gaps = 36/312 (11%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
K+ A L L + A PV+ T+ A + +LE G T ++
Sbjct: 5 KLWAGSLVLLAAVSLPLQAAS---PVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQ 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L PV ++ + +DI+ Y F +
Sbjct: 61 LGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDTAWKNAQQGYEKVKKLDAEQNKLIW 120
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMIN 160
+ + +AV + + K+ E +
Sbjct: 121 LTPAPANNTWTIAVRQDVAEKNKLTSLAELSRYLKEGGNFKLAASAEFIERADALPAFEK 180
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + + +++ + L + L + +
Sbjct: 181 AYGFKLGQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV- 239
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ VVR L + P I++ L+ + ++ I D + V L
Sbjct: 240 -QPIYAPAPVVRESVLKEYPQIAQWLQPVFASLDEKTLQQLNASIAVEGLDAKKVAADYL 298
Query: 278 RTHPDLLKNWLI 289
+ K W
Sbjct: 299 KQ-----KGWTK 305
>gi|312967423|ref|ZP_07781638.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Escherichia coli 2362-75]
gi|312287620|gb|EFR15525.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Escherichia coli 2362-75]
Length = 305
Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 44/312 (14%), Positives = 88/312 (28%), Gaps = 36/312 (11%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
K+ A L L + A PV+ T+ A + +LE G T ++
Sbjct: 5 KLWAGSLVLLAAVSLPLQAAS---PVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQ 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L PV +L + +DI+ Y F +
Sbjct: 61 LGTTPVVRGALTSGELDIYPEYTGNGAFFFKDENDTAWKNAQQGYEKVKKLDAEQNKLIW 120
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMIN 160
+ + +AV + + K+ E +
Sbjct: 121 LTPAPANNTWTIAVRQDVAEKNKLTSLAELSRYLKEGGNFKLAASAEFIERADALPAFEK 180
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + + +++ + L + L + +
Sbjct: 181 AYGFKLGQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV- 239
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ VVR L + P I++ L+ + ++ I D + V L
Sbjct: 240 -QPIYAPAPVVRESVLKEYPQIAQWLQPVFASLDEKTLQQLNASIAVEGLDAKKVAADYL 298
Query: 278 RTHPDLLKNWLI 289
+ K W
Sbjct: 299 KQ-----KGWTK 305
>gi|329920076|ref|ZP_08276907.1| ABC transporter, substrate-binding protein, QAT family
[Lactobacillus iners SPIN 1401G]
gi|328936530|gb|EGG32974.1| ABC transporter, substrate-binding protein, QAT family
[Lactobacillus iners SPIN 1401G]
Length = 505
Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 32/307 (10%), Positives = 88/307 (28%), Gaps = 36/307 (11%)
Query: 1 MYKILAVCLFLTTFSISY------ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
M+ I+ + + + ++ + A + M ++LE+
Sbjct: 207 MFLIIVLFFGIVSLGAYSLNSIKIGSNSAKSEQIIIASKDDSQFDIIANMYKILLEKNKK 266
Query: 55 YKTNIKLLAVP-VTFRSLKNKGIDIFMG----------------YWYPSLEKFIAPYLEE 97
Y + L+ IDI+ L ++ L +
Sbjct: 267 YHVIFSRRKDDRQILKELRKGNIDIYPEETRKVFSLIDNSDKKFANIDELYRYTRDILYK 326
Query: 98 GSIKLVAEN-LQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
+ + ++A + I D+ KYK +L ++ + + +
Sbjct: 327 QDLIYMTPMAYHNNYVLIADKEFAKQNKITKISDLKKYKSKLVVGMF--KDFADSSNGYE 384
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ N K + + Q + + + P N+ L
Sbjct: 385 GLKNVYKLDFPKMSVTTSD------QCYEKLKKRQVNLIAATSNDPEIKRNNLLILND-- 436
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F V ++ + K + ++++ + K + ++ + ++ V +
Sbjct: 437 DKYYFVPYQVAPIITKRFAKKHHQVVKIIEKLAGKITDDEIIQLETQVKFEHKNAAKVAK 496
Query: 275 TMLRTHP 281
L+ +
Sbjct: 497 AFLQRNK 503
>gi|312874242|ref|ZP_07734276.1| ABC transporter, substrate-binding protein, QAT family
[Lactobacillus iners LEAF 2052A-d]
gi|311090312|gb|EFQ48722.1| ABC transporter, substrate-binding protein, QAT family
[Lactobacillus iners LEAF 2052A-d]
Length = 505
Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 32/307 (10%), Positives = 88/307 (28%), Gaps = 36/307 (11%)
Query: 1 MYKILAVCLFLTTFSISY------ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
M+ I+ + + + ++ + A + M ++LE+
Sbjct: 207 MFLIIVLFFGIVSLGAYSLNSIKIGSNSAKSEQIIIASKDDSQFDIIANMYKILLEKNKK 266
Query: 55 YKTNIKLLAVP-VTFRSLKNKGIDIFMG----------------YWYPSLEKFIAPYLEE 97
Y + L+ IDI+ L ++ L +
Sbjct: 267 YHVIFSRRKDDRQILKELRKGNIDIYPEETRKVFSLIDNSDKKFANIDELYRYTRDILYK 326
Query: 98 GSIKLVAEN-LQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
+ + ++A + I D+ KYK +L ++ + + +
Sbjct: 327 QDLIYMTPMAYHNNYVLIADKEFAKQNKITKISDLKKYKSKLVVGMF--KDFADSSNGYE 384
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ N K + + Q + + + P N+ L
Sbjct: 385 GLKNVYKLDFPKMSVTTSD------QCYEKLKKRQVNLIAATSNDPEIKRNNLLILND-- 436
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F V ++ + K + ++++ + K + ++ + ++ V +
Sbjct: 437 DKYYFVPYQVAPIITKRFAKKHHQVVKIIEKLAGKITDDEIIQLETQVKFEHKNAAKVAK 496
Query: 275 TMLRTHP 281
L+ +
Sbjct: 497 AFLQRNK 503
>gi|309806597|ref|ZP_07700594.1| ABC transporter, substrate-binding protein, QAT family
[Lactobacillus iners LactinV 03V1-b]
gi|308167017|gb|EFO69199.1| ABC transporter, substrate-binding protein, QAT family
[Lactobacillus iners LactinV 03V1-b]
Length = 505
Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 32/307 (10%), Positives = 88/307 (28%), Gaps = 36/307 (11%)
Query: 1 MYKILAVCLFLTTFSISY------ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
M+ I+ + + + ++ + A + M ++LE+
Sbjct: 207 MFLIIVLFFGIVSLGAYSLNSIKIGSNSAKSEQIIIASKDDSQFDIIANMYKILLEKNKK 266
Query: 55 YKTNIKLLAVP-VTFRSLKNKGIDIFMG----------------YWYPSLEKFIAPYLEE 97
Y + L+ IDI+ L ++ L +
Sbjct: 267 YHVIFSRRKDDRQILKELRKGNIDIYPEETRKVFSLIDNSDKKFANIDELYRYTRDILYK 326
Query: 98 GSIKLVAEN-LQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
+ + ++A + I D+ KYK +L ++ + + +
Sbjct: 327 QDLIYMTPMAYHNNYVLIADKEFAKQNKITKISDLKKYKSKLVVGMF--KDFADSSNGYE 384
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ N K + + Q + + + P N+ L
Sbjct: 385 GLKNVYKLDFPKMSVTTSD------QCYEKLKKRQVNLIAATSNDPEIKRNNLLILND-- 436
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ F V ++ + K + ++++ + K + ++ + ++ V +
Sbjct: 437 DKYYFVPYQVAPIITKRFAKKHHQVVKIIEKLAGKITDDEIIQLETQVKFEHKNAAKVAK 496
Query: 275 TMLRTHP 281
L+ +
Sbjct: 497 AFLQRNK 503
>gi|221200296|ref|ZP_03573338.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia multivorans CGD2M]
gi|221205975|ref|ZP_03578989.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia multivorans CGD2]
gi|221173987|gb|EEE06420.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia multivorans CGD2]
gi|221179637|gb|EEE12042.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia multivorans CGD2M]
Length = 307
Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 45/301 (14%), Positives = 92/301 (30%), Gaps = 32/301 (10%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
+IL + L + + DA PV + T+ + + +L+ G I
Sbjct: 8 RILGLALAASVVAPGAHADA----PVVVSSKIDTEGNLLGNVIAQVLKAH-GIPVTEKIA 62
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L A P+ ++L + IDI+ Y + F +
Sbjct: 63 LGATPIVRKALTSGEIDIYPEYTGNAAFFFNKADDPVWKNARQGYDTAKQLDYAANHLVW 122
Query: 103 VAENLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKK-ELGAKIYGIEPGNEGNQRILDMIN 160
+A + +AV +K++ D K+ K+ +
Sbjct: 123 LAPAPANNTWGVAVLSSVAQARHLKTFSDFGKWVAGGGNVKLAASAEFVNSASALPSFEK 182
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F LK +L+ S + + I+ + + + + + L +
Sbjct: 183 AYGFKLKPDQLVVLSGGDTAATIKAAANQTDGVNAAMVYGTDGGIASSGLTVLDD--DKH 240
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ V+R L P I+ LK + + + I N + V ++ L
Sbjct: 241 VQPVYAPAPVIREAVLKAHPQIADYLKPVFASLDLKTLQMLNARIQINGEPAAGVAKSYL 300
Query: 278 R 278
+
Sbjct: 301 K 301
>gi|91211417|ref|YP_541403.1| hypothetical protein UTI89_C2404 [Escherichia coli UTI89]
gi|91072991|gb|ABE07872.1| hypothetical protein YehZ precursor [Escherichia coli UTI89]
Length = 305
Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 43/312 (13%), Positives = 87/312 (27%), Gaps = 36/312 (11%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
K+ A L L + A PV+ T+ A + +LE G T ++
Sbjct: 5 KVWAGSLVLLAAVSLPLQAAS---PVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQ 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L PV ++ + +DI+ Y F +
Sbjct: 61 LGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDTAWKNAQQGYEKVKKLDAEQNKLIW 120
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMIN 160
+ + +AV + + K+ E +
Sbjct: 121 LTPAPANNTWTIAVRQDVAEKNKLTSLAELSRYLKEGGNFKLAASAEFIERADALPAFEK 180
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + + +++ + L + L + +
Sbjct: 181 AYGFKLGQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV- 239
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
VVR L + P I++ L+ + ++ I D + V L
Sbjct: 240 -QPIYEPAPVVRESVLKEYPQIAQWLQPVFASLDEKTLQQLNASIAVEGLDAKKVAADYL 298
Query: 278 RTHPDLLKNWLI 289
+ K W
Sbjct: 299 KQ-----KGWTK 305
>gi|161520062|ref|YP_001583489.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia multivorans ATCC 17616]
gi|189353757|ref|YP_001949384.1| osmoprotectant transport system substrate-binding protein
[Burkholderia multivorans ATCC 17616]
gi|160344112|gb|ABX17197.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia multivorans ATCC 17616]
gi|189337779|dbj|BAG46848.1| osmoprotectant transport system substrate-binding protein
[Burkholderia multivorans ATCC 17616]
Length = 307
Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 44/301 (14%), Positives = 92/301 (30%), Gaps = 32/301 (10%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
+IL + L + + DA PV + T+ + + +L+ G I
Sbjct: 8 RILGLALAASVVAPGAHADA----PVVVSSKIDTEGNLLGNVIAQVLKAH-GIPVTEKIA 62
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L A P+ ++L + IDI+ Y + F +
Sbjct: 63 LGATPIVRKALTSGEIDIYPEYTGNAAFFFNKADDPVWKNASQGYDTAKQLDYAANHLVW 122
Query: 103 VAENLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKK-ELGAKIYGIEPGNEGNQRILDMIN 160
+A + +AV +K++ D K+ K+ +
Sbjct: 123 LAPAPANNTWGVAVLSSVAQARHLKTFSDFGKWVAGGGNVKLAASAEFVNSASALPSFEK 182
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F LK +L+ S + + I+ + + + + + L +
Sbjct: 183 AYGFKLKPDQLVVLSGGDTAATIKAAANQTDGVNAAMVYGTDGGIASSGLTVLDD--DKH 240
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ V+R L P I+ LK + + + + N + V ++ L
Sbjct: 241 VQPVYAPAPVIREAVLKAHPQIADYLKPVFASLDLKTLQMLNARVQINGEPAAGVAKSYL 300
Query: 278 R 278
+
Sbjct: 301 K 301
>gi|331673656|ref|ZP_08374419.1| putative transport system permease protein [Escherichia coli TA280]
gi|331068929|gb|EGI40321.1| putative transport system permease protein [Escherichia coli TA280]
Length = 305
Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 42/312 (13%), Positives = 87/312 (27%), Gaps = 36/312 (11%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
K+ A L L + A PV+ T+ A + +LE G T ++
Sbjct: 5 KLWASSLVLLAAVSLPLQAAS---PVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQ 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L PV ++ + +DI+ Y F +
Sbjct: 61 LGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDAAWKNAGQGYEKVKKLDAEQNKLIW 120
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMIN 160
+ + +AV + K+ E +
Sbjct: 121 LTPAPANNTWTIAVRQDVAEKNKLTSLADLSRYLKDGGTFKLAASAEFIERADALPAFEK 180
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + + +++ + L + L + +
Sbjct: 181 AYGFKLGQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV- 239
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ VVR L + P +++ L+ + ++ I D + V L
Sbjct: 240 -QPIYAPAPVVRESVLKEYPQMAQWLQPVFASLDEKTLQQLNASIAVEGLDAKKVAADYL 298
Query: 278 RTHPDLLKNWLI 289
+ K W
Sbjct: 299 KQ-----KGWTK 305
>gi|237732179|ref|ZP_04562660.1| ABC transporter substrate-binding protein [Citrobacter sp. 30_2]
gi|226907718|gb|EEH93636.1| ABC transporter substrate-binding protein [Citrobacter sp. 30_2]
Length = 305
Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 42/314 (13%), Positives = 84/314 (26%), Gaps = 36/314 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--N 58
+ K+ L L + A PV T+ A + +LE G KT
Sbjct: 3 ISKVSVGSLVLLAAISLPLQAAS---PVTVGSKIDTEGALLGNIILQVLESH-GVKTVNK 58
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------I 100
++L PV ++ + +DI+ Y F +
Sbjct: 59 VQLGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDPAWKNAQAGFEKVKKLDAEQNKL 118
Query: 101 KLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDM 158
+ + +AV K+ E +
Sbjct: 119 VWLTPAPANNTWTIAVRQDVAQKNKLESLADLGRYLKDGGTFKLAASAEFIERADALPAF 178
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEE 217
F L +L+ + + I+ + + +++ + L + L +
Sbjct: 179 EKAYDFKLNQNQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPKG 238
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
+ + VVR L P + L+ + ++ I D + V
Sbjct: 239 V--QPIYAPAPVVRESVLKDYPQMGEWLQPVFASLDEKTLQQLNASIAVEGLDAKKVAAD 296
Query: 276 MLRTHPDLLKNWLI 289
L+ K W+
Sbjct: 297 YLKQ-----KGWVK 305
>gi|320010528|gb|ADW05378.1| Substrate-binding region of ABC-type glycine betaine transport
system [Streptomyces flavogriseus ATCC 33331]
Length = 323
Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 30/286 (10%), Positives = 81/286 (28%), Gaps = 29/286 (10%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLK 72
+ +++ + ++ + G + L + ++
Sbjct: 35 GSLGKGQPLKGASLTVTSKNFSENIILGQIMGLLFKAA-GAEVLDRTNLPGSISSREAVV 93
Query: 73 NKGIDIFMGYWYPSLEKFI----------------APYLEEGSIKLVAENLQGAKYMLAV 116
D Y + ++ + + + + Y LA+
Sbjct: 94 KGEADALYDYTGTAWITYLGHAEPVVDPQKQYEVVRDEDKGNGVTWLPPSTLDNTYALAI 153
Query: 117 -NDVGFALGIKSYQDIAKYKKELGAKIYGI--EPGNEGNQRILDMINNNKFSLKGFRLIE 173
+K+ D+A K+ + + + M +L + +
Sbjct: 154 SKKNNAKYHLKTLSDVAALAKKDPKAVTVCVENEFASRDDGLPGMQKKYGMNLPASNIQK 213
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
++Q+ +N + + +N+ + + F + + +
Sbjct: 214 MDAGIIYTQVS---ESNSCLLGEVYTTDGRIKAMNLDVMED--DKQFFPNYNAAPAIHTA 268
Query: 234 YLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
LDK P I+ LL + K + L E+ + + +D V + L
Sbjct: 269 TLDKYPEIAELLAPVTEKLTTPLAQELNSKVDVDGEDPHEVAKDWL 314
>gi|291288339|ref|YP_003505155.1| Substrate-binding region of ABC-type glycine betaine transport
system [Denitrovibrio acetiphilus DSM 12809]
gi|290885499|gb|ADD69199.1| Substrate-binding region of ABC-type glycine betaine transport
system [Denitrovibrio acetiphilus DSM 12809]
Length = 304
Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 42/297 (14%), Positives = 81/297 (27%), Gaps = 30/297 (10%)
Query: 9 LFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPV 66
L L ++A PVR T+ A M +L + G +L +
Sbjct: 7 LLLAGLLTAFAAVTALADPVRVGSKIDTEGALLGNMILFVLGDA-GVPVEDKTELGPTNI 65
Query: 67 TFRSLKNKGIDIFMGYWYP------------------SLEKFIAPYLEEGSIKLVAENLQ 108
+++ IDI+ Y I + +
Sbjct: 66 VRQAIITGQIDIYPEYTGNGAYLFKDADKAAYKNWEKGYADVKQLDYLHNKIVWLTPSPA 125
Query: 109 GAKYMLAVNDVGFALGIKSYQDIAKYKKE--LGAKIYGIEPGNEGNQRILDMINNNKFSL 166
+ +AV + + + KI E + F L
Sbjct: 126 NNTWAIAVTGRFSEKNKINTLEDMADYVKGGGKVKIAVSEEFATRPDTLPAFQKAYGFKL 185
Query: 167 KGFRLIEASELASFSQIRRDQRNNI--PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEA 224
+LI S + +Q + +++ + L + L +E+
Sbjct: 186 SDNQLIILS-GGNTAQTEQALAQGTSGVNFAMAYGTDGAIAALGLKILEDTKEV--QPVY 242
Query: 225 SVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+ +VR L + P I L + +A + I N V ++ L+
Sbjct: 243 APVPIVRESVLKQYPQIKERLSEVFQTLDMATLQRLNAQIAVNGVPAGKVAKSYLKN 299
>gi|254249947|ref|ZP_04943267.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia cenocepacia PC184]
gi|124876448|gb|EAY66438.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia cenocepacia PC184]
Length = 346
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 45/305 (14%), Positives = 93/305 (30%), Gaps = 29/305 (9%)
Query: 1 MYKILAVCLFLTTFSIS-YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-- 57
M L + F+ + A A + TPV + T+ + S +L+ G
Sbjct: 40 MKLALPARILGLAFAAAIVAPGAHADTPVVVSSKIDTEGNLLGNLISQVLKAH-GIPVTE 98
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------ 99
I L P+ ++L + ID++ Y + F
Sbjct: 99 KIALGTTPIVRKALTSGEIDVYPEYTGNAAFFFNKADDPVWKNASQGYDTAKKLDYAANH 158
Query: 100 IKLVAENLQGAKYMLAVNDVGFA-LGIKSYQDIAKYKK-ELGAKIYGIEPGNEGNQRILD 157
+ +A + +A+ +K++ D K+ K+ +
Sbjct: 159 LVWLAPAPANNTWGVALLAPVAQSQHLKTFSDFGKWVAGGGKVKLAASAEFVNSASALPS 218
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGE 216
F LK +L+ S + + I+ + + + + + L
Sbjct: 219 FEKAYGFKLKPEQLVVLSGGDTAATIKAAANQTDGVNAAMVYGTDGGIASSGLAVLDD-- 276
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ + V+R L P I+ LLK + + + I N + V +
Sbjct: 277 DKHVQPVYAPAPVIREAALKAHPQIADLLKPVFASLDLKTLQSLNARIQLNGEPAAGVAK 336
Query: 275 TMLRT 279
+ L+
Sbjct: 337 SYLKA 341
>gi|271969376|ref|YP_003343572.1| proline/glycine/betaine ABC transporter substrate-binding protein
[Streptosporangium roseum DSM 43021]
gi|270512551|gb|ACZ90829.1| ABC transporter substrate binding protein (proline/glycine/betaine)
[Streptosporangium roseum DSM 43021]
Length = 304
Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats.
Identities = 36/314 (11%), Positives = 83/314 (26%), Gaps = 47/314 (14%)
Query: 1 MYKILAVCLFLTTFSIS------------------YARDADSCTPVRFADTGWTDIAATT 42
M ++ + + + +++ + + V + +
Sbjct: 1 MKRLFSTAAVILSAALTLTACGGGGDPLTSASASPAGSGSAAGGKVVVGSANFPENVLLA 60
Query: 43 AMTSVILEEILGYKTN--IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSI 100
+ + LE G + + + + V F K+ G+ + Y L +
Sbjct: 61 EIYAQALEAK-GVQVEKKLNIGSREVLFDQAKSGGLTVLPEYIGSLLAFVDKTTTAKTKD 119
Query: 101 KLVAENLQGAKYMLAVNDVGFALGIKSYQ------------DIAKYKKELGAKIYGIEPG 148
+VA + L V + A S I K G P
Sbjct: 120 DVVAGLKEKLPAELEVLEPAAAEDNNSLTVTKATATKDGLTTIEDLVKVGKNYAVGGPPE 179
Query: 149 NEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLN 208
+ Q + + K ++ ++ V + P +
Sbjct: 180 FQSRQE-KNFKDTYGLEFKEWKKTGD-------ATADAIKDGTVQVGNVFTTDPKIVIND 231
Query: 209 IHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNK 266
+ L + +V +V ++ + L + K +MK + +K
Sbjct: 232 LVSLKDTKNAF--AADNVAPLVNKAAVNDT--VKSTLNAVSAKLDTPGLLALMKRVAIDK 287
Query: 267 QDRQFVGRTMLRTH 280
D V + L +
Sbjct: 288 DDAATVAKDWLTQN 301
>gi|297200186|ref|ZP_06917583.1| ABC transporter substrate-binding protein [Streptomyces sviceus
ATCC 29083]
gi|197713363|gb|EDY57397.1| ABC transporter substrate-binding protein [Streptomyces sviceus
ATCC 29083]
Length = 311
Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats.
Identities = 28/269 (10%), Positives = 72/269 (26%), Gaps = 24/269 (8%)
Query: 28 VRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGIDIFMGYWYP 85
V +T+ + + +L++ G K ++ + +LK ID+ Y
Sbjct: 46 VTIGTANFTENQVLGYLYAAVLQQA-GVKVKVRPNLGTREIVIPALKAGDIDLLPEYQGA 104
Query: 86 SLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG------------FALGIKSYQDIAK 133
L + L V G +A
Sbjct: 105 LLNYLAPKDASAEPGTMQNALTLAMPAGLQVLPYGQAADSDCFVVTRATARKFGLATLAD 164
Query: 134 YKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPA 193
K+ G + G P + + + + ++ ++ +
Sbjct: 165 LAKQNGRLVIGAAPEVKKRRVGAVGLKE-VYGVEFKEFKSLDSDGPL--VKGALKKGDVD 221
Query: 194 VFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFS 251
V + + + L + + + ++ D + + L + +
Sbjct: 222 VANLFTTDTDIAAHDWVVLTDPKNL--IPSQHIVPLIADRKADDT--VRKALARLGNVLT 277
Query: 252 VALENEMMKLILNNKQDRQFVGRTMLRTH 280
++ + N+K+D + V + H
Sbjct: 278 TEQLTQLNSQVDNDKKDPEDVANAYAKQH 306
>gi|110642340|ref|YP_670070.1| hypothetical protein ECP_2170 [Escherichia coli 536]
gi|117624334|ref|YP_853247.1| transporter subunit periplasmic-binding protein [Escherichia coli
APEC O1]
gi|191170110|ref|ZP_03031664.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Escherichia coli F11]
gi|218559050|ref|YP_002391963.1| transporter subunit: periplasmic-binding component of ABC
superfamily [Escherichia coli S88]
gi|218690279|ref|YP_002398491.1| putative ABC transporter periplasmic-binding protein [Escherichia
coli ED1a]
gi|237704592|ref|ZP_04535073.1| transporter subunit periplasmic-binding protein [Escherichia sp.
3_2_53FAA]
gi|300981495|ref|ZP_07175576.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 200-1]
gi|331658210|ref|ZP_08359172.1| putative transport system permease protein [Escherichia coli TA206]
gi|110343932|gb|ABG70169.1| hypothetical protein YehZ precursor [Escherichia coli 536]
gi|115513458|gb|ABJ01533.1| putative transporter subunit: periplasmic-binding component of ABC
superfamily [Escherichia coli APEC O1]
gi|190909626|gb|EDV69211.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Escherichia coli F11]
gi|218365819|emb|CAR03559.1| putative transporter subunit: periplasmic-binding component of ABC
superfamily [Escherichia coli S88]
gi|218427843|emb|CAR08756.2| putative transporter subunit: periplasmic-binding component of ABC
superfamily [Escherichia coli ED1a]
gi|226900958|gb|EEH87217.1| transporter subunit periplasmic-binding protein [Escherichia sp.
3_2_53FAA]
gi|294490161|gb|ADE88917.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Escherichia coli IHE3034]
gi|300307568|gb|EFJ62088.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 200-1]
gi|307626327|gb|ADN70631.1| putative transporter subunit: periplasmic-binding component of ABC
superfamily protein [Escherichia coli UM146]
gi|315285798|gb|EFU45238.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 110-3]
gi|323951926|gb|EGB47800.1| osmoprotectant transport system substrate-binding protein
[Escherichia coli H252]
gi|323956165|gb|EGB51917.1| osmoprotectant transport system substrate-binding protein
[Escherichia coli H263]
gi|324013918|gb|EGB83137.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 60-1]
gi|331056458|gb|EGI28467.1| putative transport system permease protein [Escherichia coli TA206]
Length = 305
Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats.
Identities = 43/312 (13%), Positives = 88/312 (28%), Gaps = 36/312 (11%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
K+ A L L + A PV+ T+ A + +LE G T ++
Sbjct: 5 KVWAGSLVLLAAVSLPLQAAS---PVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQ 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L PV ++ + +DI+ Y F +
Sbjct: 61 LGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDTAWKNAQQGYEKVKKLDAEQNKLIW 120
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMIN 160
+ + +AV + + K+ E +
Sbjct: 121 LTPAPANNTWTIAVRQDVAEKNKLTSLAELSRYLKEGGNFKLAASAEFIERADALPAFEK 180
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + + +++ + L + L + +
Sbjct: 181 AYGFKLGQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV- 239
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ VVR L + P I++ L+ + ++ I D + V L
Sbjct: 240 -QPIYAPAPVVRESVLKEYPQIAQWLQPVFASLDEKTLQQLNASIAVEGLDAKKVAADYL 298
Query: 278 RTHPDLLKNWLI 289
+ K W
Sbjct: 299 KQ-----KGWTK 305
>gi|333024824|ref|ZP_08452888.1| putative ABC transporter substrate-binding protein [Streptomyces
sp. Tu6071]
gi|332744676|gb|EGJ75117.1| putative ABC transporter substrate-binding protein [Streptomyces
sp. Tu6071]
Length = 326
Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats.
Identities = 31/283 (10%), Positives = 76/283 (26%), Gaps = 30/283 (10%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGID 77
+ + A +T+ A+ + + G + ++++ D
Sbjct: 42 GEPLKGAKLTVASKEFTEQLVLGAIMGIAFKAA-GADVLDRTGIQGSIGAREAVRSGTAD 100
Query: 78 IFMGYWYPSLEKFI----------------APYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
Y ++ I Y LA+N
Sbjct: 101 AMYEYTGTGWITYLGHTKPIVDPHEQWVAVRDADRRNGITWGTPGPLNNTYALALNRKNE 160
Query: 122 ALG-IKSYQDIAKYKKELGAKIYGI--EPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
++ D+A K+ + + + ++ R+ + +
Sbjct: 161 KKYRTRTLSDVAALSKKNPGAVTLCVEGEFAAREDGLNGLKRAYGMNIPNSRITKMAGGI 220
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+ + L++ + + F +V V + L++
Sbjct: 221 ----VYTQTAKGACVFGEVFTTDGRIKALHLAVMKD--DKHFFPNYNVAPVFHTKALEEH 274
Query: 239 PNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
P + R+L I K + A+ E+ + + +D V R L
Sbjct: 275 PQMERVLAPITKKLTNAVARELNAKVDVDGEDPHDVARDWLEE 317
>gi|325110139|ref|YP_004271207.1| substrate-binding region of ABC-type glycine betaine transporter
[Planctomyces brasiliensis DSM 5305]
gi|324970407|gb|ADY61185.1| Substrate-binding region of ABC-type glycine betaine transport
system [Planctomyces brasiliensis DSM 5305]
Length = 502
Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats.
Identities = 30/294 (10%), Positives = 84/294 (28%), Gaps = 29/294 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-- 58
M +I+ C+ + + + + +T+ + + + E+ G
Sbjct: 1 MSRIILCCVIGLLVLTAGCSRSAN---MTVGSKAFTESVVLAEICATLAEQE-GANVRHV 56
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFI-----------APYLEEGSIKLVAENL 107
+L V + +L+ ID++ Y ++ L+ I +
Sbjct: 57 RELGGTRVMWDALRAGEIDVYPEYTGTIEQEIYQGQSFASQAELKAALQRDGIVMSESLG 116
Query: 108 QGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
Y L + + I+ ++ ++ + + + +
Sbjct: 117 FNNTYALGMRRDRARE--LGIETISDLREHPDLRLGFSNEFLDRGDGWPSVRAAYQLPQQ 174
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
+ RN + + P ++ L E +
Sbjct: 175 KVT------GLEHTLAYEALRNGGLDIIDLYATDPQIVADDLLVLKDDLEHF--PQYDAV 226
Query: 228 TVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+ R D+ ++ P ++R L + S E+ + + +++ V +
Sbjct: 227 LLFRKDFANRKPALTRALLQLDGTISEQRMAELNRQVQLDRKSEHNVAAAFVHE 280
>gi|170697507|ref|ZP_02888597.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia ambifaria IOP40-10]
gi|170137530|gb|EDT05768.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia ambifaria IOP40-10]
Length = 307
Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats.
Identities = 45/304 (14%), Positives = 89/304 (29%), Gaps = 29/304 (9%)
Query: 1 MYKILAV-CLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-- 57
M L L L + A A + TPV + T+ + + +L+ G
Sbjct: 1 MKLALPARILGLALAATVVAPGAHADTPVVVSSKIDTEGNLLGNVIAQVLKAH-GIPVTE 59
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------ 99
I L P+ ++L + IDI+ Y + F
Sbjct: 60 KIALGTTPIVRKALTSGEIDIYPEYTGNAAFFFNKADDPAWKNASQGYDTAKKLDYAANH 119
Query: 100 IKLVAENLQGAKYMLAVNDVGFA-LGIKSYQDIAKYKKE-LGAKIYGIEPGNEGNQRILD 157
+ + + +AV +K+ D K+ K+ +
Sbjct: 120 LVWLTPAPANNTWGVAVLAPVAQSQHLKTLSDFGKWTVSGGKVKLAASAEFVNSPSALPS 179
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGE 216
F LK +L+ S + + I+ + + + + + L
Sbjct: 180 FEKAYGFKLKPDQLVVLSGGDTAATIKAAANQTDGVNAAMVYGTDGGIASSGLVVLDD-- 237
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ + V+R L P I+ LK + + + I N + V +
Sbjct: 238 DKHVQPVYAPTPVIREAALKVHPQIADYLKPVFASLDLKTLQTLNARIQINGEPAAGVAK 297
Query: 275 TMLR 278
+ L+
Sbjct: 298 SYLK 301
>gi|302521539|ref|ZP_07273881.1| ABC transporter substrate-binding protein [Streptomyces sp. SPB78]
gi|302430434|gb|EFL02250.1| ABC transporter substrate-binding protein [Streptomyces sp. SPB78]
Length = 326
Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats.
Identities = 33/283 (11%), Positives = 76/283 (26%), Gaps = 30/283 (10%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGID 77
+ + A +T+ A+ + + G + ++K+ D
Sbjct: 42 GEPLKGAKLTVASKEFTEQLVLGAIMGIAFKAA-GADVLDRTGIQGSIGAREAVKSGTAD 100
Query: 78 IFMGYWYPSLEKFI----------------APYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
Y ++ I Y LA+N
Sbjct: 101 AMYEYTGTGWITYLGHTKPIVDPHEQWVAVRDADRRNGITWGTPGPLNNTYALALNRKNE 160
Query: 122 ALG-IKSYQDIAKYKKELGAKIYGI--EPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
K+ D+A K+ + + + ++ R+ + +
Sbjct: 161 KKYRTKTLSDVAALSKKNPGAVTLCVEGEFAAREDGLNGLKRAYGMNIPNSRITKMAGGI 220
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+ + L++ + + F +V V + L++
Sbjct: 221 ----VYTQTAKGACVFGEVFTTDGRIKALHLAVMKD--DKHFFPNYNVAPVFHTKALEEH 274
Query: 239 PNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
P + R+L I K + A+ E+ + + +D V R L
Sbjct: 275 PQMERVLAPITKKLTNAVARELNAKVDVDGEDPHDVARDWLEE 317
>gi|238763805|ref|ZP_04624763.1| hypothetical protein ykris0001_33030 [Yersinia kristensenii ATCC
33638]
gi|238697935|gb|EEP90694.1| hypothetical protein ykris0001_33030 [Yersinia kristensenii ATCC
33638]
Length = 310
Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats.
Identities = 45/302 (14%), Positives = 94/302 (31%), Gaps = 31/302 (10%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
+I A+ + S ++ AD VR T+ + + +L+ G KT +
Sbjct: 9 RIFALATVMLAVSAGASQAAD---TVRVGSKIDTEGSLLGNIIVQVLDAN-GIKTTNKSQ 64
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPS------------------LEKFIAPYLEEGSIKL 102
L V ++ IDI+ Y EK ++ +
Sbjct: 65 LGTTKVVRGAITAGEIDIYPEYTGNGAFFFSDEKDPAWKDAKAGYEKVKKLDYDKNKLVW 124
Query: 103 VAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKEL-GAKIYGIEPGNEGNQRILDMIN 160
++ + +A+ +K+ D+ K+ K+ E +
Sbjct: 125 LSPAPANNTWTIAIRQDLANANNLKTLDDLGKWINAGGKFKLAASAEFIERPDALPAFQQ 184
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + +++ + L + L + +
Sbjct: 185 AYGFKLNQDQLLSLAGGDTAVTIKAAAEQTSGVNAAMAYGTDGPVAALGLRTLEDTKGV- 243
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ ++R L PNI LL + A ++ I QD + V L
Sbjct: 244 -QPIYAPTPIIREATLKAHPNIPALLDPVFATLDSATLQKLNARIAVEGQDAKKVAANYL 302
Query: 278 RT 279
+
Sbjct: 303 KE 304
>gi|94984282|ref|YP_603646.1| substrate-binding region of ABC-type glycine betaine transport
system [Deinococcus geothermalis DSM 11300]
gi|94554563|gb|ABF44477.1| ABC-type proline/glycine/betaine transport system, periplasmic
component [Deinococcus geothermalis DSM 11300]
Length = 300
Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats.
Identities = 40/304 (13%), Positives = 83/304 (27%), Gaps = 36/304 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--N 58
M K+L + L + S + P+ + M + L G +
Sbjct: 1 MSKVLCLSLAVLMGSAAA-------KPIVVGSKLDPEAQILGQMIVLTLRNA-GLEVSDK 52
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPS-------------------LEKFIAPYLEEGS 99
L V +++ ID++ Y + + + +
Sbjct: 53 TNLGDTGVNRKAILAGEIDVYPEYTGNAVYLFPQAKISAKDAGNPGKIYGYARQLDAKNG 112
Query: 100 IKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL--GAKIYGIEPGNEGNQRILD 157
I + +++AV S + KI G +
Sbjct: 113 ITWLKPANVNNTWVIAVPQALAQREKLSSVADLARYLQAGGRFKIAGSPEFFNRPDTMPA 172
Query: 158 MINNNKFSLKGF-RLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
F L+ +L+ A +Q N +++ + L + L +
Sbjct: 173 FEAAYGFKLRPDQKLVLAGATPPQTQQAAANGTNGVNAAMAYGTDGTLAALKLVALKDPK 232
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKN--IKFSVALENEMMKLILNNKQDRQFVGR 274
++RS+ L P I LL + A + + + Q V +
Sbjct: 233 GA--QAVYQPAPIIRSEVLQAHPEIGTLLNKTFATLTQAGLQRLNAQVALEGRTAQEVAQ 290
Query: 275 TMLR 278
+ L+
Sbjct: 291 SYLK 294
>gi|83720523|ref|YP_442899.1| ABC transporter periplasmic glycine/betaine-binding protein
[Burkholderia thailandensis E264]
gi|83654348|gb|ABC38411.1| ABC transporter, periplasmic glycine/betaine-binding protein,
putative [Burkholderia thailandensis E264]
Length = 383
Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats.
Identities = 39/289 (13%), Positives = 85/289 (29%), Gaps = 28/289 (9%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKN 73
+ A A + + A T+ + + +L+ G I L A P+ ++L
Sbjct: 93 CATAPGAHAAGAITVASKIDTEGNLLGNVIAQVLKAH-GIAVVDKIGLGATPIVRKALTT 151
Query: 74 KGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKLVAENLQGAKYMLA 115
IDI+ Y + F I +A + +A
Sbjct: 152 GEIDIYPEYTGNAAFFFNKADDPAWKNAAQGYALARQLDYAANRIVWLAPAPANNTWGVA 211
Query: 116 VNDVGFAL-GIKSYQDIAKYKKE-LGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
V +K++ D ++ K+ + F LK +++
Sbjct: 212 VLSSVAQAQHLKTFSDFGRWVGAGGKVKLAASAEFVNSASALPSFEKVYGFKLKQEQMLV 271
Query: 174 ASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRS 232
S + + I+ + + + + + + L + + ++R
Sbjct: 272 LSGGDTAATIKAAAQQTDGVNAAMVYGTDGGIAAAGLTVLDD--DKHVQPVYAPTPIIRE 329
Query: 233 DYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
L P I+ LK + + + I N + V + L+
Sbjct: 330 AVLKAHPQIADYLKPVFAGLDLKTLQTLNARIQINGEPAASVAASYLKA 378
>gi|213615812|ref|ZP_03371638.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Typhi str. E98-2068]
Length = 264
Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats.
Identities = 30/255 (11%), Positives = 67/255 (26%), Gaps = 34/255 (13%)
Query: 68 FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKS 127
+ S+ + W P + A + + GA ++ +
Sbjct: 4 YTSIASGDATFTAVNWQPLHDDMYAAAGGDKKFYREGVFVSGAAQGYLIDKKTAEQYNIT 63
Query: 128 YQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
I + A + G PG I K + + A
Sbjct: 64 NIAQLKDPKIAKIFDTNGDGKADMMGCSPGWGCEAVINHQNKAFDL-QKTVEVSHGNYAA 122
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI-------------------- 218
+ + P ++ +W P+ ++ + ++
Sbjct: 123 MMADTITRFKEGKPVLYYTWTPYWVSDVMKPGKDVVWLQVPFSSLPGEQKNIDTKLPNGA 182
Query: 219 -SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV---GR 274
GF +++ V + +K P ++L +K +A N ++ K V
Sbjct: 183 NYGFPVNTMHIVANKAWAEKNPAAAKLFAIMKLPLADINAQNAMMHAGKSSEADVQGHVD 242
Query: 275 TMLRTHPDLLKNWLI 289
+ H W+
Sbjct: 243 GWINAHQQQFDGWVK 257
>gi|256787439|ref|ZP_05525870.1| permease binding-protein component [Streptomyces lividans TK24]
gi|289771337|ref|ZP_06530715.1| permease binding-protein component [Streptomyces lividans TK24]
gi|289701536|gb|EFD68965.1| permease binding-protein component [Streptomyces lividans TK24]
Length = 322
Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats.
Identities = 28/283 (9%), Positives = 73/283 (25%), Gaps = 30/283 (10%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGID 77
+ +T+ A+ + E G + + T +++N D
Sbjct: 40 GKPLDGADLTVTSKEFTEQLVLGAIMGIAFEAA-GAEVLDRTGIQGSVGTRAAVENGDAD 98
Query: 78 IFMGYWYPSLEKFI----------------APYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
Y + ++ + + + Y LA+N +
Sbjct: 99 ATYEYTGTAWITYLGNSRPIPDPEQQWKAVKEADAKKGLTWLEPARLNNTYALAMNQANY 158
Query: 122 ALG-IKSYQDIAKYKKELGAKIYGI--EPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
K+ ++ K + + + SL + +
Sbjct: 159 KKYRTKTLSEVTALSKSDPGAVTLCVEGEFANRADGLPGLEKAYGMSLPAGNITQMDTGI 218
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
I + +N+ + ++ + +VR+ L K
Sbjct: 219 ----IYTQTAKGACTYGEVYTTDGRIKSMNLVVMEDDKKFF--PNYNAAPMVRTATLKKW 272
Query: 239 PNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
P I+ +L + + + + + + QD V ++
Sbjct: 273 PAIASVLDPVTRALTNDVAQTLNAKVDVDGQDPHQVALDWMKE 315
>gi|320196000|gb|EFW70624.1| Osmoprotectant ABC transporter binding protein YehZ [Escherichia
coli WV_060327]
Length = 299
Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats.
Identities = 40/301 (13%), Positives = 86/301 (28%), Gaps = 31/301 (10%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
K+ A L L + A PV+ T+ A + +LE G T ++
Sbjct: 5 KVWAGSLVLLAAVSLPLQAAS---PVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQ 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L PV ++ + +DI+ Y F +
Sbjct: 61 LGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDTAWKNAQQGYEKVKKLDAEQNKLIW 120
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMIN 160
+ + +AV + + K+ E +
Sbjct: 121 LTPAPANNTWTIAVRQDVAEKNKLTSLADLSRYLKEGGTFKLAASAEFIERADALPAFEK 180
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + + +++ + L + L + +
Sbjct: 181 AYGFKLGQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV- 239
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ VVR L + P +++ L+ + ++ I D + V L
Sbjct: 240 -QPIYAPAPVVRESVLKEYPQMAQWLRPVFASLDEKTLQQLNASIAVEGLDAKKVAADYL 298
Query: 278 R 278
+
Sbjct: 299 K 299
>gi|170721476|ref|YP_001749164.1| glycine betaine transporter periplasmic subunit [Pseudomonas putida
W619]
gi|169759479|gb|ACA72795.1| Substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas putida W619]
Length = 337
Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats.
Identities = 36/315 (11%), Positives = 90/315 (28%), Gaps = 48/315 (15%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEI---LGYKTNIKLLAVPVTFRSLKNKGIDI 78
+R+A + + I+ + LGYK + L + F ++ + +DI
Sbjct: 27 PGDGRTIRYAQ---DSSLGGNYVVAQIVSDAFKALGYKVKLVTLDNTLFFPAVAQRDMDI 83
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKK-- 136
P E ++ + + G ++ + + K K
Sbjct: 84 GTDITLPQREPGFRAVAKDAELVGEGMIIGGGINGYLIDKKTALANNITTLEQLKDPKVA 143
Query: 137 -----ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI 191
A++ +P + I + + + + + + + +
Sbjct: 144 ALFGSSGKAELTSCDPAWSCGKVIDYQMKAFELTGTVRQ-VRGKYEELMADVVTKVKGGK 202
Query: 192 PAVFLSWEPHP----INSDLNIHYLPGGEEI---------------------------SG 220
P F +W P + ++ +LP ++
Sbjct: 203 PVFFYAWSPSWVTNALVPGSDVLWLPTPKDALPPDIPNDGSALVKDVEGCAGDANPCRMA 262
Query: 221 FGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQ---FVGRTML 277
G + +TV +L P I +L++ + F A+ ++ I + + +
Sbjct: 263 MGSWNYHTVANKQFLADNPAIRQLMQQVHFPTAVWSQWEAAIGKEGGSPEMIRKLADQWI 322
Query: 278 RTHPDLLKNWLIGVT 292
+ W+
Sbjct: 323 GANQAQFDQWIAAAK 337
>gi|169627366|ref|YP_001701015.1| amino acid ABC transporter substrate-binding protein [Mycobacterium
abscessus ATCC 19977]
gi|169239333|emb|CAM60361.1| Probable amino acid ABC transporter, substrate binding
[Mycobacterium abscessus]
Length = 310
Score = 102 bits (253), Expect = 8e-20, Method: Composition-based stats.
Identities = 31/309 (10%), Positives = 83/309 (26%), Gaps = 38/309 (12%)
Query: 1 MYK---ILAVCLFLTTFSISYARDADSCTPVR-------FADTGWTDIAATTAMTSVILE 50
M + +L + FS + + P+ + + + + IL
Sbjct: 1 MRRAAQLLVAVMAAIFFSGCGSANPLGGGPLSGNLNTLIVGSADFPESKTVAELYAQIL- 59
Query: 51 EILGYKTNIKLLAVPVT----------------FRSLKNKGIDIFMGYWYPSLEKFIAPY 94
+I G+ +L + + D P +
Sbjct: 60 QINGFDVTRQLGIGSRETYIPAVKDHSIDLIADYTGNLLRYFDPEATATKPDEVELALLR 119
Query: 95 LEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGN-EGNQ 153
+G + +++ + L V + + I G +
Sbjct: 120 KLDGDLDILSPSPAADADTLCVTRATAEK--WNLRSIGDLAAHSAEVTVGAPSEFLHRSV 177
Query: 154 RILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLP 213
+ + N + R + S+ + + + + + P ++ ++ L
Sbjct: 178 GLAGLKANYGLDIPESRFVAISDGGGPATV-KALVDGTITTANIFSTSPAIAEHDLVVLD 236
Query: 214 GGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLIL-NNKQDRQ 270
F ++ +V + K + ++L + + A + + NN D +
Sbjct: 237 DP--KFTFPAGNLVPLVNAQ--KKSEKLKKVLDALSARLTTADLTGLNAAVSGNNGVDPK 292
Query: 271 FVGRTMLRT 279
+ L
Sbjct: 293 EAAQKWLTD 301
>gi|318057202|ref|ZP_07975925.1| ABC transporter substrate-binding protein [Streptomyces sp.
SA3_actG]
Length = 326
Score = 102 bits (253), Expect = 8e-20, Method: Composition-based stats.
Identities = 33/283 (11%), Positives = 76/283 (26%), Gaps = 30/283 (10%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGID 77
+ + A +T+ A+ + + G + ++K+ D
Sbjct: 42 GEPLKGAKLTVASKEFTEQLVLGAIMGIAFKAA-GADVLDRTGIQGSIGAREAVKSGTAD 100
Query: 78 IFMGYWYPSLEKFI----------------APYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
Y ++ I Y LA+N
Sbjct: 101 AMYEYTGTGWITYLGHTKPIVDPHEQWVAVRDADRRNGITWGTPGPLNNTYALALNRKNE 160
Query: 122 ALG-IKSYQDIAKYKKELGAKIYGI--EPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
K+ D+A K+ + + + ++ R+ + +
Sbjct: 161 KKYRTKTLSDVAALSKKNPGAVTLCVEGEFAAREDGLNGLKRAYGMNIPNSRITKMAGGI 220
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+ + L++ + + F +V V + L++
Sbjct: 221 ----VYTQTAKGACVFGEVFTTDGRIKALHLAVMKD--DKHFFPNYNVAPVFHTKALEEH 274
Query: 239 PNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
P + R+L I K + A+ E+ + + +D V R L
Sbjct: 275 PQMERVLAPITKKLTNAVARELNAKVDVDGEDPHDVARNWLEE 317
>gi|306814753|ref|ZP_07448915.1| putative transporter subunit: periplasmic-binding component of ABC
superfamily protein [Escherichia coli NC101]
gi|305852147|gb|EFM52599.1| putative transporter subunit: periplasmic-binding component of ABC
superfamily protein [Escherichia coli NC101]
gi|324006495|gb|EGB75714.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 57-2]
Length = 305
Score = 102 bits (253), Expect = 8e-20, Method: Composition-based stats.
Identities = 42/312 (13%), Positives = 88/312 (28%), Gaps = 36/312 (11%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
K+ A L L + A PV+ T+ A + +LE G T ++
Sbjct: 5 KVWAGSLVLLAAVSLPLQAAS---PVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQ 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L PV ++ + +DI+ Y F +
Sbjct: 61 LGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDTAWKNAQQGYEKVKKLDAEQNKLIW 120
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMIN 160
+ + +AV + + K+ E +
Sbjct: 121 LTPAPANNTWTIAVRQDVAEKNKLTSLADLSRYLKEGGTFKLAASAEFIERADALPAFEK 180
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + + +++ + L + L + +
Sbjct: 181 AYGFKLGQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV- 239
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ VVR L + P +++ L+ + ++ I D + V L
Sbjct: 240 -QPIYAPAPVVRESVLKEYPQMAQWLRPVFASLDEKTLQQLNASIAVEGLDAKKVAADYL 298
Query: 278 RTHPDLLKNWLI 289
+ K W
Sbjct: 299 KQ-----KGWTK 305
>gi|218705660|ref|YP_002413179.1| putative ABC transporter periplasmic-binding protein [Escherichia
coli UMN026]
gi|298381282|ref|ZP_06990881.1| osmoprotectant uptake system substrate-binding protein osmF
[Escherichia coli FVEC1302]
gi|300901251|ref|ZP_07119352.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 198-1]
gi|301021103|ref|ZP_07185144.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 69-1]
gi|218432757|emb|CAR13651.1| putative transporter subunit: periplasmic-binding component of ABC
superfamily [Escherichia coli UMN026]
gi|284922117|emb|CBG35198.1| ABC transporter, substrate-binding protein [Escherichia coli 042]
gi|298278724|gb|EFI20238.1| osmoprotectant uptake system substrate-binding protein osmF
[Escherichia coli FVEC1302]
gi|300355325|gb|EFJ71195.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 198-1]
gi|300398284|gb|EFJ81822.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 69-1]
Length = 305
Score = 102 bits (253), Expect = 8e-20, Method: Composition-based stats.
Identities = 42/312 (13%), Positives = 88/312 (28%), Gaps = 36/312 (11%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
K+ A L L + A PV+ T+ A + +LE G T ++
Sbjct: 5 KLWAGSLVLLAAVSLPLQAAS---PVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQ 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L PV ++ + +DI+ Y F +
Sbjct: 61 LGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDAAWKNAGQGYEKVKKLDAEQNKLIW 120
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMIN 160
+ + +AV + + K+ E +
Sbjct: 121 LTPAPANNTWTIAVRQDVAEKNKLTSLADLSRYLKEGGTFKLAASAEFIERADALPAFEK 180
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + + +++ + L + L + +
Sbjct: 181 AYGFKLGQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV- 239
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ VVR L + P +++ L+ + ++ I D + V L
Sbjct: 240 -QPIYAPAPVVRESVLKEYPQMAQWLQPVFASLDEKTLQQLNASIAVEGLDAKKVAADYL 298
Query: 278 RTHPDLLKNWLI 289
+ K W
Sbjct: 299 KQ-----KGWTK 305
>gi|123443080|ref|YP_001007054.1| putative substrate-binding transport protein [Yersinia
enterocolitica subsp. enterocolitica 8081]
gi|122090041|emb|CAL12904.1| putative substrate-binding transport protein [Yersinia
enterocolitica subsp. enterocolitica 8081]
Length = 310
Score = 102 bits (253), Expect = 8e-20, Method: Composition-based stats.
Identities = 46/302 (15%), Positives = 92/302 (30%), Gaps = 31/302 (10%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
+I A+ + S ++ AD VR T+ + + +L+ G KT +
Sbjct: 9 RIFALATVMLAVSGGASQAAD---TVRVGSKIDTEGSLLGNIIVQVLDAN-GIKTTNKSQ 64
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L V ++ IDI+ Y F +
Sbjct: 65 LGTTKVVRGAITAGEIDIYPEYTGNGAFFFSDEKDPAWKDAKAGYEKVKALDYEKNKLVW 124
Query: 103 VAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKEL-GAKIYGIEPGNEGNQRILDMIN 160
++ + +AV A +K+ D+ K+ K+ E +
Sbjct: 125 LSPAPANNTWTIAVRQDLASANNLKTLDDLGKWINAGGKFKLAASAEFIERPDALPAFQQ 184
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + +++ + L + L + +
Sbjct: 185 AYGFKLNQDQLLSLAGGDTAVTIKAAAEQTSGVNAAMAYGTDGPVAALGLQTLEDTKGV- 243
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ ++R L PNI LL + A ++ I QD + V L
Sbjct: 244 -QPIYAPTPIIRETTLKAHPNIPALLDPVFATLDSATLQKLNARIAVEGQDAKKVAANYL 302
Query: 278 RT 279
+
Sbjct: 303 KE 304
>gi|238749871|ref|ZP_04611375.1| hypothetical protein yrohd0001_36390 [Yersinia rohdei ATCC 43380]
gi|238711800|gb|EEQ04014.1| hypothetical protein yrohd0001_36390 [Yersinia rohdei ATCC 43380]
Length = 310
Score = 102 bits (253), Expect = 8e-20, Method: Composition-based stats.
Identities = 44/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
+I + + S ++ ADS VR T+ + + +L+ G KT +
Sbjct: 9 RIFVLSAVMLAASGGVSQAADS---VRVGSKIDTEGSLLGNIIVQVLDAN-GIKTTNKSQ 64
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEG------------------SIKL 102
L A V ++ IDI+ Y F +
Sbjct: 65 LGATKVVRGAITAGEIDIYPEYTGNGAFFFSDEKDPAWRDAKAGYEKVKALDYEKNKLVW 124
Query: 103 VAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKEL-GAKIYGIEPGNEGNQRILDMIN 160
++ + +AV +K+ D+ ++ K+ E +
Sbjct: 125 LSPAPANNTWTIAVRQDLAKANNLKTLDDLGRWINAGGKFKLAASAEFIERPDALPAFQQ 184
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + +++ + L + L + +
Sbjct: 185 AYGFKLNQDQLLSLAGGDTAVTIKAAAEQTSGVNGAMAYGTDGPVAALGLQTLEDTKGV- 243
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ ++R L + PNI LL + ++ I QD + V L
Sbjct: 244 -QPIYAPTPIIREATLKEYPNIPDLLNPVFATLDGPTLQKLNARISVEGQDAKKVAANYL 302
Query: 278 RT 279
+
Sbjct: 303 KE 304
>gi|26248509|ref|NP_754549.1| hypothetical protein c2661 [Escherichia coli CFT073]
gi|227887185|ref|ZP_04004990.1| transporter subunit: periplasmic-binding component of ABC
superfamily protein [Escherichia coli 83972]
gi|300978678|ref|ZP_07174368.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 45-1]
gi|301048863|ref|ZP_07195857.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 185-1]
gi|26108914|gb|AAN81117.1|AE016763_76 Hypothetical protein yehZ precursor [Escherichia coli CFT073]
gi|227835535|gb|EEJ46001.1| transporter subunit: periplasmic-binding component of ABC
superfamily protein [Escherichia coli 83972]
gi|300299318|gb|EFJ55703.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 185-1]
gi|300409610|gb|EFJ93148.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 45-1]
gi|307554200|gb|ADN46975.1| putative glycine/betaine/choline ABC superfamily transport protein
[Escherichia coli ABU 83972]
gi|315294505|gb|EFU53853.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 153-1]
Length = 305
Score = 102 bits (253), Expect = 9e-20, Method: Composition-based stats.
Identities = 45/312 (14%), Positives = 90/312 (28%), Gaps = 36/312 (11%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
K+ A L L + A PV+ T+ A + +LE G T ++
Sbjct: 5 KLWAGSLVLLAAVSLPLQAAS---PVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQ 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPS------------------LEKFIAPYLEEGSIKL 102
L PV ++ + +DI+ Y EK E+ +
Sbjct: 61 LGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDTVWKNAQQGYEKVKKLDAEQNKLIW 120
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMIN 160
+ + +AV + + K+ E +
Sbjct: 121 LTPAPANNTWTIAVRQDVAEKNKLTSLAELSRYLKEGGNFKLAASAEFIERADALPAFEK 180
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + + +++ + L + L + +
Sbjct: 181 AYGFKLGQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV- 239
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ VVR L + P I++ L+ + ++ I D + V L
Sbjct: 240 -QPIYAPAPVVRESVLKEYPQIAQWLQPVFASLDEKTLQQLNASIAVEGLDAKKVAADYL 298
Query: 278 RTHPDLLKNWLI 289
K W
Sbjct: 299 TQ-----KGWTK 305
>gi|238794098|ref|ZP_04637715.1| hypothetical protein yinte0001_24490 [Yersinia intermedia ATCC
29909]
gi|238726603|gb|EEQ18140.1| hypothetical protein yinte0001_24490 [Yersinia intermedia ATCC
29909]
Length = 310
Score = 102 bits (253), Expect = 9e-20, Method: Composition-based stats.
Identities = 44/302 (14%), Positives = 91/302 (30%), Gaps = 31/302 (10%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
+I A+ + T S ++ AD VR T+ + + +L+ G KT +
Sbjct: 9 RIFALAAMVLTASTGISQAAD---TVRVGSKIDTEGSLLGNIIVQVLDAN-GIKTTNKSQ 64
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L V ++ IDI+ Y F +
Sbjct: 65 LGTTKVVRGAITAGEIDIYPEYTGNGAFFFSDEKDPAWKNAKAGYEKVKALDYEKNKLVW 124
Query: 103 VAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKEL-GAKIYGIEPGNEGNQRILDMIN 160
++ + +AV +K+ +D+ K+ K+ E +
Sbjct: 125 LSPAPANNTWTIAVRQDLAQANNLKTLEDLGKWINAGGKFKLAASAEFIERPDALPAFQQ 184
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + +++ + L + L + +
Sbjct: 185 AYGFKLNQDQLLSLAGGDTAVTIKAAAEQTSGVNAAMAYGTDGPVAALGLQTLEDTKGV- 243
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ ++R L P I LL + ++ I QD + V L
Sbjct: 244 -QPIYAPTPIIREATLKAHPTIPALLNPVFATLDGPTLQQLNARIAVEGQDAKKVAANYL 302
Query: 278 RT 279
+
Sbjct: 303 KE 304
>gi|325497946|gb|EGC95805.1| transporter subunit: periplasmic-binding component of ABC
superfamily [Escherichia fergusonii ECD227]
Length = 305
Score = 102 bits (253), Expect = 9e-20, Method: Composition-based stats.
Identities = 42/312 (13%), Positives = 88/312 (28%), Gaps = 36/312 (11%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
K+ A L L + A PV+ T+ A + +LE G T ++
Sbjct: 5 KLWAGSLVLLAAVSLPLQAAS---PVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQ 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L PV ++ + +DI+ Y F +
Sbjct: 61 LGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDAAWKNAGQGYEKVKKLDAEQNKLIW 120
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMIN 160
+ + +AV + + K+ E +
Sbjct: 121 LTPAPANNTWTIAVRQDMAEKNKLTSLADLSRYLKEGGIFKLAASAEFIERADALPAFEK 180
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + + +++ + L + L + +
Sbjct: 181 AYGFKLDQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV- 239
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ VVR L + P +++ L+ + ++ I D + V L
Sbjct: 240 -QPIYAPAPVVRESVLKEYPQMAQWLQPVFASLDEKTLQQLNASIAVEGLDAKKVAADYL 298
Query: 278 RTHPDLLKNWLI 289
+ K W
Sbjct: 299 KQ-----KGWTK 305
>gi|120406543|ref|YP_956372.1| glycine betaine ABC transporter substrate-binding protein
[Mycobacterium vanbaalenii PYR-1]
gi|119959361|gb|ABM16366.1| Substrate-binding region of ABC-type glycine betaine transport
system [Mycobacterium vanbaalenii PYR-1]
Length = 316
Score = 102 bits (253), Expect = 9e-20, Method: Composition-based stats.
Identities = 27/283 (9%), Positives = 75/283 (26%), Gaps = 24/283 (8%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKN 73
+ + ++ +T+ + + LE G+ + + + ++++
Sbjct: 32 LGGGEISGDLKSIKVGSADFTESKIIAEIYAQALEAN-GFTISRQFGIGSRETYIPAVRD 90
Query: 74 KGIDIFMGYWYPSLEKFIAP--------------YLEEGSIKLVAENLQGAKYMLAVNDV 119
ID+ Y L+ F G + ++ + K LAV+
Sbjct: 91 HSIDLIPEYTGNLLQYFDPESAATTPDSVLLGLLKALPGDLSILYPSPAEDKDTLAVSAE 150
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ + IA G ++ + + + S+
Sbjct: 151 TAQR--WNLKSIADLAAHSAEVKVGAPSEFQTRQTGLVGLKEKYGLDIAPANFVAISDGG 208
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+ + + + + P + L + + V V ++
Sbjct: 209 GPATV-KALTDGTVTAANIFSTSPAIERSALVVLEDPKNVFL-AANVVPLVASQKMSNEL 266
Query: 239 PNISRLLKNIKFSVALENEMMKLIL-NNKQDRQFVGRTMLRTH 280
+ + K + E+ + N D R + +
Sbjct: 267 KTVLDAVSA-KLTTEALIELNTSVEGNQGVDPDEAARKWISDN 308
>gi|92115059|ref|YP_574987.1| substrate-binding region of ABC-type glycine betaine transport
system [Chromohalobacter salexigens DSM 3043]
gi|91798149|gb|ABE60288.1| Substrate-binding region of ABC-type glycine betaine transport
system [Chromohalobacter salexigens DSM 3043]
Length = 310
Score = 102 bits (253), Expect = 9e-20, Method: Composition-based stats.
Identities = 42/303 (13%), Positives = 80/303 (26%), Gaps = 29/303 (9%)
Query: 8 CLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVP 65
L L + + PVR + T+ A M +LE ++L
Sbjct: 12 VLGLAAVTALSISPVFAADPVRVSSKIDTEGALLGNMMVQLLEHA-DVPVEENLQLGPTN 70
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKLVAENL 107
+ +L ID++ Y + +
Sbjct: 71 IVRSALLEDEIDLYPEYTGNGAFFTQTTDDPAWKQAEAGYEKIRAYDKQHNDLVWLTPAP 130
Query: 108 QGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMINNNKFS 165
+ +A+ S K+ G E + + F+
Sbjct: 131 ANNTWAIALRRDIADEHDLSTMQDFAAWVRDGGEVKLAGSAEFVESDAALPSFQRAYDFT 190
Query: 166 LKGFRLIEASELASFSQIRRDQRNNIP-AVFLSWEPHPINSDLNIHYLPGGEEISGFGEA 224
L +L+ S + + IR N + + + ++ + + +
Sbjct: 191 LDQEQLLVLSGGNTAATIRAAANNTSGTNAAMVYGTDGAIAAADLRVMDDTQGVQM--VY 248
Query: 225 SVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRTHPD 282
+ V+R LD P I LL + + I + V R L + D
Sbjct: 249 APAPVIRQATLDAYPEIPELLGPLFEGLDRETLQTLNSRIQVDGMPASDVARDYLES-QD 307
Query: 283 LLK 285
LL
Sbjct: 308 LLD 310
>gi|114569621|ref|YP_756301.1| glycine betaine ABC transporter substrate-binding protein
[Maricaulis maris MCS10]
gi|114340083|gb|ABI65363.1| Substrate-binding region of ABC-type glycine betaine transport
system [Maricaulis maris MCS10]
Length = 525
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 31/281 (11%), Positives = 71/281 (25%), Gaps = 32/281 (11%)
Query: 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRSLKNKGID 77
D + V +T+ A+ LEE G + + + L + F +L+ ID
Sbjct: 249 GADTLADQTVVVGAKAFTEQYILGALMQTRLEEA-GARVDRLDNLGSTIAFDALRTGEID 307
Query: 78 IFMGYWYPSLEKFIAP----------------YLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+++ Y + E I + Y A+
Sbjct: 308 VYIDYTGTIWATVMNRSEPINRNAMLAEMTGWLYAEHGILALGGLGFENAYGFAMARDRA 367
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
+A + G + ++ N + +
Sbjct: 368 EA--LGVDSLADLASQAEGMSVGGDAEVFSRPEWVNTRNRYGLGAMQ------TRAMDAA 419
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNI 241
+ R+ + ++ + ++ L + ++ D P +
Sbjct: 420 FMYGAVRDGQVDLISAYTTDGRIAAFDLLVLADPLAVL--PPYDAVILLSPD-AAANPAL 476
Query: 242 SRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
L + E +L+ ++Q L H
Sbjct: 477 VEALSGLIGAIDSEAMREANRLVDLDRQTPDQAAI-WLSDH 516
>gi|302523796|ref|ZP_07276138.1| predicted protein [Streptomyces sp. AA4]
gi|302432691|gb|EFL04507.1| predicted protein [Streptomyces sp. AA4]
Length = 309
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 38/282 (13%), Positives = 86/282 (30%), Gaps = 32/282 (11%)
Query: 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGI 76
A + P+ A +TD + + LE GY + L + + + SLK+ +
Sbjct: 35 AAPSKGGAPIVVASFNFTDSQILAEIYAGALEAK-GYPVTRKLNLGSRELVYPSLKSGEL 93
Query: 77 DIFMGYWY---------------PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
Y + + + L+ K V
Sbjct: 94 QFLPEYQGAAITTGFGKEATKDAKAEHDQLEKLFAPEGVGLLNYAAAEDKNTYIVKADLA 153
Query: 122 A-LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
GI S D+ K K + A E + + K + F+ ++ +
Sbjct: 154 KSKGIASISDLKKLDKVVMAGAPECEKRLPCFKGFT---DVYKLTNITFQTVQEAGPRV- 209
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD-YLDKCP 239
+ + V P+ + Y+ ++++ +V V ++ P
Sbjct: 210 ----QQLNSGAVTVIPVDSVSPLVG--DPQYVALKDDLAIVPTENVVPAVNKKVLDERGP 263
Query: 240 NISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+ + ++ + K + E+ K + + + V + L+
Sbjct: 264 DFANVVNAVSAKLTTDGMRELNKRVDADGEPAADVAKDWLKQ 305
>gi|300088010|ref|YP_003758532.1| glycine betaine ABC transporter substrate-binding protein
[Dehalogenimonas lykanthroporepellens BL-DC-9]
gi|299527743|gb|ADJ26211.1| Substrate-binding region of ABC-type glycine betaine transport
system [Dehalogenimonas lykanthroporepellens BL-DC-9]
Length = 315
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/314 (12%), Positives = 91/314 (28%), Gaps = 37/314 (11%)
Query: 1 MYK----ILAVCLFLTTFSISYARD-----ADSCTPVRFADTGWTDIAATTAMTSVILEE 51
M + +LA + L + D V T+ + ++L++
Sbjct: 1 MKRVVFTLLAALVVLGAVVSGCSNDDPNDQPSEVKRVTVGSKIDTEGGLLGQIIVLLLQD 60
Query: 52 ILGYKTN--IKLLAVPVTFRSLKNKGIDIFMGY---------------WYPSLEKFIAPY 94
G++ PV ++ + IDI+ Y W + + ++
Sbjct: 61 A-GFEVTDRTGTGTTPVVRNAIISGEIDIYPEYTGNGAFFFDETDSPVWNDAQQGYLRVK 119
Query: 95 LEE---GSIKLVAENLQGAKYMLAVNDVGFA-LGIKSYQDIAKYKKELGAKIYGIEPGNE 150
+ SI+ + + +AV + G+ S +D+A Y G
Sbjct: 120 ELDKAANSIEWLTPAPANNTWAIAVTEALAQSAGLVSLEDLADYVNGGGNFKLAGSAEFF 179
Query: 151 GNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI--PAVFLSWEPHPINSDLN 208
+ + +Q + +++ +
Sbjct: 180 DSPLAMPAFEAAYGFSLSAGQTIIVGSGDTAQTEQAASQGTDGVNAAMAYGTDGALAAFG 239
Query: 209 IHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNK 266
+ L + +VR++ L P I+++L + + + I+ +
Sbjct: 240 LVVLEDTLGV--QPIYEPAPLVRAEVLATYPEIAQILNPVFQTLDLVTLQTLNGRIVVDG 297
Query: 267 QDRQFVGRTMLRTH 280
+ V R L T+
Sbjct: 298 ESASTVARHYLTTN 311
>gi|149184099|ref|ZP_01862441.1| hypothetical protein BSG1_21835 [Bacillus sp. SG-1]
gi|148848194|gb|EDL62502.1| hypothetical protein BSG1_21835 [Bacillus sp. SG-1]
Length = 244
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 27/249 (10%), Positives = 70/249 (28%), Gaps = 38/249 (15%)
Query: 54 GYKTNIKLL--AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP------------------ 93
K V + +++ ID+++ Y L+ +
Sbjct: 1 DLNVERKEGLGEVSILTPAIEKGDIDMYVEYTGTGLKAVLKEEAAEGASADEIYEQVKNG 60
Query: 94 YLEEGSIKLVAENLQGAKYMLAVND---VGFALGIKSYQDIAKYKKELGAKIYGIEPGNE 150
Y E+ + + Y LA V + + Y
Sbjct: 61 YEEKYGVTWLEPLGFENTYTLAYRKGEDVDAETYSELVPLSENMVFGAPHQFYERPG--- 117
Query: 151 GNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIH 210
D++ F+ + + + + +N + ++ ++
Sbjct: 118 --DGYDDLVKAYGFNFESTESYDPNI------MYEAVKNGDVDLIPAFTTDGRIQRYDLA 169
Query: 211 YLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQD 268
+ +VR + LDK P ++ + + + + +E+ + +K++
Sbjct: 170 TTKDDKGFF--PPFYAAPIVRQEVLDKHPELADAINELAGQITEEEMSELNAKVDIDKEE 227
Query: 269 RQFVGRTML 277
+ V R L
Sbjct: 228 PEDVAREFL 236
>gi|113867599|ref|YP_726088.1| ABC-type transporter, fused periplasmic and permease components
[Ralstonia eutropha H16]
gi|113526375|emb|CAJ92720.1| ABC-type transporter, fused periplasmic and permease components
[Ralstonia eutropha H16]
Length = 493
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 34/294 (11%), Positives = 74/294 (25%), Gaps = 27/294 (9%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYW 83
+ P+R +T+ + + + L + F +LK GID++ Y
Sbjct: 14 AADPLRIGSKRFTESYILGELLTQAAGPPGAAQHQPGLGNTAIVFEALKAGGIDLYPDYT 73
Query: 84 YPSLEKFIAPYLE---EGSIKLVAENLQGAKYMLAVNDVGF----ALGIKSYQDIAKYKK 136
+ + + + +A GA L + + + ++
Sbjct: 74 GTLAAEILKLPPGAGLDAIQRALAPMGLGAAIPLGFENTYALAVSDARAGALRRLSDLAA 133
Query: 137 ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFL 196
+ ++ + + + L
Sbjct: 134 QPQFRLGLSHEFLGRADGWPGLASRYGLPQRPVGLDHGV-------AYEALAAGQVDAID 186
Query: 197 SWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVAL 254
+ + L + F V R D + P + L+ + + S
Sbjct: 187 IYSTDAKIRKYKLRVLED--DRHYFPRYDAVVVYRLDVPQRFPQAWQALERLAGRVSADD 244
Query: 255 ENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVT-TFDGQDPSRQLERFM 307
M + Q + R L G T DG +P +L +
Sbjct: 245 MIAMNAAAEIDGQSFDAIARAFLAG--------TAGQRATHDGAEPRSRLAAAL 290
>gi|324114451|gb|EGC08420.1| hypothetical protein ERIG_00990 [Escherichia fergusonii B253]
Length = 305
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 42/312 (13%), Positives = 88/312 (28%), Gaps = 36/312 (11%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
K+ A L L + A PV+ T+ A + +LE G T ++
Sbjct: 5 KLWAGSLVLLAAVSLPLQAAS---PVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQ 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L PV ++ + +DI+ Y F +
Sbjct: 61 LGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDAAWKNAGQGYEKVKKLDAEQNKLIW 120
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMIN 160
+ + +AV + + K+ E +
Sbjct: 121 LTPAPANNTWTIAVRQDMAEKNKLTSLADLSRYLKEGGIFKLAASAEFIERADALPAFEK 180
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + + +++ + L + L + +
Sbjct: 181 AYGFKLDQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV- 239
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ VVR L + P +++ L+ + ++ I D + V L
Sbjct: 240 -QPIYAPAPVVRESVLKEYPQMAQWLQPVFASLDEKTLQQLNASIAVEGLDAKKVATDYL 298
Query: 278 RTHPDLLKNWLI 289
+ K W
Sbjct: 299 KQ-----KGWTK 305
>gi|320333648|ref|YP_004170359.1| ABC-type glycine betaine transport, periplasmic subunit
[Deinococcus maricopensis DSM 21211]
gi|319754937|gb|ADV66694.1| ABC-type glycine betaine transport, periplasmic subunit
[Deinococcus maricopensis DSM 21211]
Length = 300
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 38/293 (12%), Positives = 75/293 (25%), Gaps = 27/293 (9%)
Query: 11 LTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEE-ILGYKTNIKLLAVPVTFR 69
L +++ A P+ A + M + L + L L V +
Sbjct: 4 LLFLTLAVTTSAALAKPIVVASKLDPEAQLLGQMILLTLRDAGLDVTDKTGLGDTGVARK 63
Query: 70 SLKNKGIDIFMGYWYPS-------------------LEKFIAPYLEEGSIKLVAENLQGA 110
++ + ID++ Y + + Y + I +
Sbjct: 64 AILSGEIDVYPEYTGNAVYLFPDAKINLASSRNPRGIYALAKKYDAKNGITWLQPANVNN 123
Query: 111 KYMLAVNDVGFALGIKSYQDIAKYKKE--LGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
+ LA+ S + K+ G F+L
Sbjct: 124 TWALALPAKFAQANKLSTYADLAAYLKRGGTLKVAGSPEFFNRPDAFKLFERTYGFTLTS 183
Query: 169 -FRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
+L A +Q + +++ S LN+ L +
Sbjct: 184 AQKLTLAGATPLQTQQAAASGQSGVNAAMAYGTDGTISALNLITLKDPKNA--QPVYQPA 241
Query: 228 TVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
++R+D L P I LL + I + + V L+
Sbjct: 242 PIIRTDVLKANPKIEGLLNKAFGTLDQTTIQRLNAQIAVEGRSARDVASAYLK 294
>gi|297623802|ref|YP_003705236.1| glycine betaine ABC transporter substrate-binding protein [Truepera
radiovictrix DSM 17093]
gi|297164982|gb|ADI14693.1| Substrate-binding region of ABC-type glycine betaine transport
system [Truepera radiovictrix DSM 17093]
Length = 302
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 37/282 (13%), Positives = 88/282 (31%), Gaps = 29/282 (10%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGIDIF 79
A PV T+ + + ++LE G + V +L ID++
Sbjct: 17 AAQGEPVTIGSKVDTEGSVLAQIMRLMLESN-GIEVVDRSGFGTTSVVREALLAGEIDMY 75
Query: 80 MGYWYPS-------------------LEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
Y + L + + E + + + + +AV
Sbjct: 76 PEYTGTALTFFPDAGLDEDLATRPDELYETLRELDAENGVTYLGRSPANNTWAIAVPQAL 135
Query: 121 F-ALGIKSYQDIAKYKKE-LGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
G++S D+A Y E ++ + + + F++ G +L+ +
Sbjct: 136 ADEHGLESMADLADYINEGGAFRLAASQEFVDRPDALPAFEATYGFNVSGDQLVILAGGN 195
Query: 179 SFSQIRRDQR-NNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDK 237
+ + + +++ I L + L E + VR++ ++
Sbjct: 196 TTQTVTAAANGTDGVNAAMAYGTDGIIGALGMVTLSDPENA--VAIYQPFPAVRTEVVEA 253
Query: 238 CPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
P + +L + A E+ + + ++ V + L
Sbjct: 254 YPQLPEILDPVFAALDEATLQELNGRVAVDGENPADVAQDFL 295
>gi|226308394|ref|YP_002768354.1| ABC transporter substrate-binding protein [Rhodococcus erythropolis
PR4]
gi|226187511|dbj|BAH35615.1| putative ABC transporter substrate-binding protein [Rhodococcus
erythropolis PR4]
Length = 331
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 34/306 (11%), Positives = 81/306 (26%), Gaps = 38/306 (12%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPV--------RFADTGWTDIAATTAMTSVILEEILGY 55
++A C + ++ A S PV +T+ + + G
Sbjct: 23 LVASCGLESGGALPLAVGPGSIEPVPELEGVKMTVGSKDFTEQIVLGYVIEFAM-AAAGA 81
Query: 56 KTN--IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE----------------- 96
+ T + N ID+ Y ++
Sbjct: 82 DVRDLTNIQGSNSTRDAQLNGQIDLAYEYTGTGWINYLGNETPLPDSQAQFEAVRDADLA 141
Query: 97 EGSIKLVAENLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKKELGAKIYGI--EPGNEGNQ 153
+ Y LA++ G+K+ D AK + N
Sbjct: 142 ANDMVWTDPAPMNNTYALAMSKETAEKTGVKTVSDYAKLVESDPGAAVTCVETEFNVRQD 201
Query: 154 RILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLP 213
+ F + + ++ + L++ L
Sbjct: 202 GYPGLAAKYGFDASRAQRQILQTGIIYQATA---DSDQCKFGEVFTTDGRIIALDLVLLE 258
Query: 214 GGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQF 271
+ + + V++ D+ + P ++ ++ I K + + E+ + + + ++
Sbjct: 259 DDLQFF--PKYNPALVMKKDFAEAHPEVAEVMAPISEKLTNEVMTELNRQVDVDGKEPAD 316
Query: 272 VGRTML 277
V R L
Sbjct: 317 VARDWL 322
>gi|157369688|ref|YP_001477677.1| glycine betaine ABC transporter substrate-binding protein [Serratia
proteamaculans 568]
gi|157321452|gb|ABV40549.1| Substrate-binding region of ABC-type glycine betaine transport
system [Serratia proteamaculans 568]
Length = 310
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 42/283 (14%), Positives = 89/283 (31%), Gaps = 28/283 (9%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGIDIF 79
A + VR T+ + + +LE G KT ++L V ++ + ID++
Sbjct: 25 AQAADTVRVGSKIDTEGSLLGNIIVQVLESN-GIKTTNKLQLGTTKVLRGAITSGEIDVY 83
Query: 80 MGYWYP------------------SLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
Y EK ++ I + + +A+
Sbjct: 84 PEYTGNGAFFFSDEKDPAWKNAQAGFEKVKKLDYDKNKIVWLDAAPANNTWTIAIRQDVA 143
Query: 122 A-LGIKSYQDIAKYKK-ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+K+ D+ K+ K+ E + N F L +L+ + +
Sbjct: 144 ETNHLKTLADLGKWINGGGKFKLAASAEFIERPDALPAFQNAYGFKLNQDQLLSLAGGDT 203
Query: 180 FSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
I+ + +++ + L + L + + + ++R L +
Sbjct: 204 AVTIKAAAEQTSGVNAAMAYGTDGPVAALGLITLEDPKGV--QPIYAPAPIIREATLKQH 261
Query: 239 PNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
NI+ LLK + ++ I QD + V L+
Sbjct: 262 ANIAELLKPVFATLDGPTLQKLNAQIAVEGQDAKQVAAAYLKE 304
>gi|281179223|dbj|BAI55553.1| putative glycine/betaine/choline ABC transporter substrate binding
component [Escherichia coli SE15]
Length = 305
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 42/312 (13%), Positives = 88/312 (28%), Gaps = 36/312 (11%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
K+ A L L + A PV+ T+ A + +LE G T ++
Sbjct: 5 KVWAGSLVLLAAVSLPLQAAS---PVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQ 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L PV ++ + +DI+ Y F +
Sbjct: 61 LGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDAAWKNVQQGYEKVKKLDAEQNKLIW 120
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMIN 160
+ + +AV + + K+ E +
Sbjct: 121 LTPAPANNTWTIAVRQDVAEKNKLTSLADLSRYLQEGGTFKLAASAEFIERADALPAFEK 180
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + + +++ + L + L + +
Sbjct: 181 AYGFKLGQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV- 239
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ VVR L + P +++ L+ + ++ I D + V L
Sbjct: 240 -QPIYAPAPVVRESVLKEYPQMAQWLQPVFASLDEKTLQQLNASIAVEGLDAKKVAADYL 298
Query: 278 RTHPDLLKNWLI 289
+ K W
Sbjct: 299 KQ-----KGWTK 305
>gi|218549546|ref|YP_002383337.1| ABC transporter periplasmic-binding protein [Escherichia fergusonii
ATCC 35469]
gi|218357087|emb|CAQ89720.1| putative transporter subunit: periplasmic-binding component of ABC
superfamily [Escherichia fergusonii ATCC 35469]
Length = 305
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 42/312 (13%), Positives = 88/312 (28%), Gaps = 36/312 (11%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
K+ A L L + A PV+ T+ A + +LE G T ++
Sbjct: 5 KLWAGSLVLLAAVSLPLQAAS---PVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQ 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L PV ++ + +DI+ Y F +
Sbjct: 61 LGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDAAWKNAGQGYEKVKKLDAEQNKLIW 120
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMIN 160
+ + +AV + + K+ E +
Sbjct: 121 LTPAPANNTWTIAVRQDMAEKNKLTSLADLSRYLKEGGTFKLAASAEFIERADALPAFEK 180
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + + +++ + L + L + +
Sbjct: 181 AYGFKLGQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV- 239
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ VVR L + P +++ L+ + ++ I D + V L
Sbjct: 240 -QPIYAPAPVVRESVLKEYPQMAQWLQPVFASLDEKTLQQLNASIAVEGLDAKKVATDYL 298
Query: 278 RTHPDLLKNWLI 289
+ K W
Sbjct: 299 KQ-----KGWTK 305
>gi|325526936|gb|EGD04398.1| ABC glycine betaine/choline transporter, periplasmic ligand binding
protein [Burkholderia sp. TJI49]
Length = 307
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 44/301 (14%), Positives = 91/301 (30%), Gaps = 32/301 (10%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
+IL + L + D TPV + T+ + + +L+ G I
Sbjct: 8 RILGLALAAAFVAPGAYAD----TPVVVSSKIDTEGNLLGNLIAQVLKAH-GIPVTEKIA 62
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L A P+ ++L + IDI+ Y + F +
Sbjct: 63 LGATPIVRKALTSGEIDIYPEYTGNAAFFFNKADDPVWKNAEQGYDTARKLDYAANHLVW 122
Query: 103 VAENLQGAKYMLAVNDVGFA-LGIKSYQDIAKYKK-ELGAKIYGIEPGNEGNQRILDMIN 160
+A + +AV +K++ + K+ K+ +
Sbjct: 123 LAPAPANNTWGVAVLAQVAQSQHLKTFSEFGKWIAGGGKVKLAASAEFVNSASALPSFEK 182
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F LK +L+ S + + I+ + + + + + L +
Sbjct: 183 AYGFKLKPEQLVVLSGGDTAATIKAAANQTDGVNAAMVYGTDGGIASSGLAVLDD--DKH 240
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ V+R L P I+ LK + + + I N + V ++ L
Sbjct: 241 VQPVYAPAPVIREAVLKAHPQIADYLKPVFASLDLKTLQTLNARIQINGEPAAGVAKSYL 300
Query: 278 R 278
+
Sbjct: 301 K 301
>gi|188495588|ref|ZP_03002858.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Escherichia coli 53638]
gi|191165449|ref|ZP_03027291.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Escherichia coli B7A]
gi|218554697|ref|YP_002387610.1| putative ABC transporter periplasmic-binding protein [Escherichia
coli IAI1]
gi|256017701|ref|ZP_05431566.1| putative transporter subunit: periplasmic-binding component of ABC
superfamily protein [Shigella sp. D9]
gi|293446482|ref|ZP_06662904.1| osmoprotectant uptake system substrate-binding protein osmF
[Escherichia coli B088]
gi|300818869|ref|ZP_07099074.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 107-1]
gi|300821765|ref|ZP_07101910.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 119-7]
gi|300917030|ref|ZP_07133725.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 115-1]
gi|307311289|ref|ZP_07590933.1| Substrate-binding region of ABC-type glycine betaine transport
system [Escherichia coli W]
gi|309793009|ref|ZP_07687437.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 145-7]
gi|331668830|ref|ZP_08369678.1| putative transport system permease protein [Escherichia coli TA271]
gi|331678080|ref|ZP_08378755.1| putative transport system permease protein [Escherichia coli H591]
gi|332278716|ref|ZP_08391129.1| conserved hypothetical protein [Shigella sp. D9]
gi|188490787|gb|EDU65890.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Escherichia coli 53638]
gi|190904612|gb|EDV64319.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Escherichia coli B7A]
gi|218361465|emb|CAQ99054.1| putative transporter subunit: periplasmic-binding component of ABC
superfamily [Escherichia coli IAI1]
gi|291323312|gb|EFE62740.1| osmoprotectant uptake system substrate-binding protein osmF
[Escherichia coli B088]
gi|300415705|gb|EFJ99015.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 115-1]
gi|300525607|gb|EFK46676.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 119-7]
gi|300528488|gb|EFK49550.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 107-1]
gi|306908795|gb|EFN39292.1| Substrate-binding region of ABC-type glycine betaine transport
system [Escherichia coli W]
gi|308123295|gb|EFO60557.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 145-7]
gi|315061442|gb|ADT75769.1| predicted transporter subunit: periplasmic-binding component of ABC
superfamily [Escherichia coli W]
gi|323377977|gb|ADX50245.1| Substrate-binding region of ABC-type glycine betaine transport
system [Escherichia coli KO11]
gi|323944948|gb|EGB41013.1| yehZ protein [Escherichia coli H120]
gi|331064024|gb|EGI35935.1| putative transport system permease protein [Escherichia coli TA271]
gi|331074540|gb|EGI45860.1| putative transport system permease protein [Escherichia coli H591]
gi|332101068|gb|EGJ04414.1| conserved hypothetical protein [Shigella sp. D9]
Length = 305
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 41/312 (13%), Positives = 88/312 (28%), Gaps = 36/312 (11%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
K+ A L + + A PV+ T+ A + +LE G T ++
Sbjct: 5 KLWAGSLVMLAAVSLPLQAAS---PVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQ 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L PV ++ + +DI+ Y F +
Sbjct: 61 LGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDAAWKNAQQGYEKVKKLDSEHNKLIW 120
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMIN 160
+ + +AV + + K+ E +
Sbjct: 121 LTPAPANNTWTIAVRQDVAEKNKLTSLADLSRYLQEGGTFKLAASAEFIERADALPAFEK 180
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + + +++ + L + L + +
Sbjct: 181 AYGFKLGQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV- 239
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ VVR L + P +++ L+ + ++ I D + V L
Sbjct: 240 -QPIYAPAPVVRESVLKEYPQMAQWLQPVFASLDAKTLQQLNASIAVEGLDAKKVAADYL 298
Query: 278 RTHPDLLKNWLI 289
+ K W
Sbjct: 299 KQ-----KGWTK 305
>gi|331647782|ref|ZP_08348874.1| putative transport system permease protein [Escherichia coli M605]
gi|330911962|gb|EGH40472.1| osmoprotectant ABC transporter binding protein YehZ [Escherichia
coli AA86]
gi|331043506|gb|EGI15644.1| putative transport system permease protein [Escherichia coli M605]
Length = 305
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 42/312 (13%), Positives = 88/312 (28%), Gaps = 36/312 (11%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
K+ A L L + A PV+ T+ A + +LE G T ++
Sbjct: 5 KVWAGSLVLLAAVSLPLQAAS---PVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQ 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L PV ++ + +DI+ Y F +
Sbjct: 61 LGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDAAWKNAQQGYEKVKKLDAEQNKLIW 120
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMIN 160
+ + +AV + + K+ E +
Sbjct: 121 LTPAPANNTWTIAVRQDVAEKNKLTSLADLSRYLQEGGTFKLAASAEFIERADALPAFEK 180
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + + +++ + L + L + +
Sbjct: 181 AYGFKLGQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV- 239
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ VVR L + P +++ L+ + ++ I D + V L
Sbjct: 240 -QPIYAPAPVVRESVLKEYPQMAQWLQPVFASLDEKTLQQLNASIAVEGLDAKKVAADYL 298
Query: 278 RTHPDLLKNWLI 289
+ K W
Sbjct: 299 KQ-----KGWTK 305
>gi|156933296|ref|YP_001437212.1| hypothetical protein ESA_01108 [Cronobacter sakazakii ATCC BAA-894]
gi|156531550|gb|ABU76376.1| hypothetical protein ESA_01108 [Cronobacter sakazakii ATCC BAA-894]
Length = 302
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/296 (13%), Positives = 83/296 (28%), Gaps = 28/296 (9%)
Query: 9 LFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPV 66
L+ + A A + PV+ T+ A + +LE G KT I+L PV
Sbjct: 5 LWSAAGLVLLAAGAQAAEPVKVGSKIDTEGALLGNVILQVLESH-GVKTVNKIQLGTTPV 63
Query: 67 TFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEG------------------SIKLVAENLQ 108
++ + +DI+ Y F + +
Sbjct: 64 VRGAITSGELDIYPEYTGNGAFFFKQENDPAWKNAKQGYEKVKKLDAEQNKLIWLTPAAA 123
Query: 109 GAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMINNNKFSL 166
+ +AV + K+ E + +F L
Sbjct: 124 NNTWTIAVRQDLAQKNKLISLADLSRYLKEGGTFKLAASAEFIERPDALPAFEKAYQFKL 183
Query: 167 KGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEAS 225
+++ + + I+ + + +++ + L + L + + +
Sbjct: 184 NQDQMLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLTDPKGV--QPVYA 241
Query: 226 VYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
VVR L P++ + + + E+ I D V L+
Sbjct: 242 PAPVVREAVLKAYPDMPQWFEPVFKALDEKTLQELNAQIAVEGLDAGKVASQWLKE 297
>gi|295836860|ref|ZP_06823793.1| amine ABC transporter, periplasmic amine-binding protein
[Streptomyces sp. SPB74]
gi|197699531|gb|EDY46464.1| amine ABC transporter, periplasmic amine-binding protein
[Streptomyces sp. SPB74]
Length = 311
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 30/283 (10%), Positives = 75/283 (26%), Gaps = 30/283 (10%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGID 77
+ + A +T+ A+ + + G + ++K+ D
Sbjct: 27 GEPLKGAKLTVASKEFTEQLVLGAIMGIAFKAA-GADVLDRTGIQGSIGAREAVKSGTAD 85
Query: 78 IFMGYWYPSLEKFI----------------APYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
Y ++ + Y LA+N
Sbjct: 86 AMYEYTGTGWITYLGHAKPIIDPHEQWVAVRDADRRNGVIWGPPGPLNNTYALALNRKNE 145
Query: 122 ALG-IKSYQDIAKYKKELGAKIYGI--EPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
++ D+A K + + + ++ R+ + +
Sbjct: 146 KKYRTRTLSDVAALSKRNPGAVTLCVEGEFAAREDGLNGLKRAYGMNIPNSRVTKMAGGI 205
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+ + L++ + + F +V V + L++
Sbjct: 206 ----VYTQTAKGACVFGEVFTTDGRVKALHLKVMKD--DKHFFPNYNVAPVFHTKALEEH 259
Query: 239 PNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
P + ++L I K + A+ E+ + + +D V R L
Sbjct: 260 PQMEKVLAPITKKLTNAVALELNAKVDVDGEDPHDVARDWLEK 302
>gi|300902219|ref|ZP_07120219.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 84-1]
gi|301305175|ref|ZP_07211274.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 124-1]
gi|300405738|gb|EFJ89276.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 84-1]
gi|300839579|gb|EFK67339.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 124-1]
gi|315255356|gb|EFU35324.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 85-1]
Length = 305
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 41/312 (13%), Positives = 88/312 (28%), Gaps = 36/312 (11%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
K+ A L + + A PV+ T+ A + +LE G T ++
Sbjct: 5 KLWAGSLVMLAAVSLPLQAAS---PVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQ 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L PV ++ + +DI+ Y F +
Sbjct: 61 LGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDAAWKNAQQGYEKVKKLDSEHNKLIW 120
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMIN 160
+ + +AV + + K+ E +
Sbjct: 121 LTPAPANNTWTIAVRQDVAEKNKLTSLADLSRYLQEGGTFKLAASAEFIERADALPAFEK 180
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + + +++ + L + L + +
Sbjct: 181 AYGFKLGQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGSVAALGLQTLSDPQGV- 239
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ VVR L + P +++ L+ + ++ I D + V L
Sbjct: 240 -QPIYAPAPVVRESVLKEYPQMAQWLQPVFASLDAKTLQQLNASIAVEGLDAKKVAADYL 298
Query: 278 RTHPDLLKNWLI 289
+ K W
Sbjct: 299 KQ-----KGWTK 305
>gi|222033893|emb|CAP76634.1| Uncharacterized protein yehZ [Escherichia coli LF82]
gi|312946750|gb|ADR27577.1| putative transporter subunit: periplasmic-binding component of ABC
superfamily protein [Escherichia coli O83:H1 str. NRG
857C]
Length = 305
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 42/312 (13%), Positives = 88/312 (28%), Gaps = 36/312 (11%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
K+ A L L + A PV+ T+ A + +LE G T ++
Sbjct: 5 KVWAGSLVLLAAVSLPLQAAS---PVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQ 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L PV ++ + +DI+ Y F +
Sbjct: 61 LGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDTAWKNAQQGYEKVKKLDAEQNKLIW 120
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMIN 160
+ + +AV + + K+ E +
Sbjct: 121 LTPAPANNTWTIAVRQDVAEKNKLTSLADLSRYLKEGGTFKLAASAEFIERADALPAFEK 180
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + + +++ + L + L + +
Sbjct: 181 AYGFKLGQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV- 239
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ VVR L + P +++ L+ + ++ I D + V L
Sbjct: 240 -QPIYAPAPVVRESVLKEYPQMAQWLQPVFASLDAKTLQQLNASIAVEGLDAKKVAADYL 298
Query: 278 RTHPDLLKNWLI 289
+ K W
Sbjct: 299 KQ-----KGWTK 305
>gi|238788794|ref|ZP_04632585.1| hypothetical protein yfred0001_11120 [Yersinia frederiksenii ATCC
33641]
gi|238723099|gb|EEQ14748.1| hypothetical protein yfred0001_11120 [Yersinia frederiksenii ATCC
33641]
Length = 310
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 42/302 (13%), Positives = 90/302 (29%), Gaps = 31/302 (10%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
++ A+ + + ++ AD VR T+ + + +L+ G KT +
Sbjct: 9 RVFALAAIMLAITGGVSQAAD---TVRVGSKIDTEGSLLGNIIVQVLDAN-GIKTTNKSQ 64
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L V ++ IDI+ Y F +
Sbjct: 65 LGTTKVVRGAITAGEIDIYPEYTGNGAFFFSDEKDPAWKNAKAGYEKVKALDYEKNKLVW 124
Query: 103 VAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKEL-GAKIYGIEPGNEGNQRILDMIN 160
++ + +AV +K+ D+ K+ K+ E +
Sbjct: 125 LSPAPANNTWTIAVRQDLAKTNSLKTLDDLGKWINTGGKFKLAASAEFIERPDALPAFQQ 184
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + +++ + L + L + +
Sbjct: 185 AYGFKLNQDQLLSLAGGDTAVTIKAAAEQTSGVNAAMAYGTDGPVAALGLQTLEDTKGV- 243
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ ++R L PNI LL + ++ I QD + V L
Sbjct: 244 -QPIYAPTPIIREATLKAHPNIPALLDPVFATLDGPTLQKLNARIAVEGQDAKKVAANYL 302
Query: 278 RT 279
+
Sbjct: 303 KE 304
>gi|229488628|ref|ZP_04382494.1| substrate-binding region of ABC-type glycine betaine transport
system [Rhodococcus erythropolis SK121]
gi|229324132|gb|EEN89887.1| substrate-binding region of ABC-type glycine betaine transport
system [Rhodococcus erythropolis SK121]
Length = 331
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 34/307 (11%), Positives = 80/307 (26%), Gaps = 40/307 (13%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPV--------RFADTGWTDIAATTAMTSVILEEILGY 55
++A C + ++ A S PV +T+ + + G
Sbjct: 23 LVASCGLESGGALPLAVGPGSIEPVPELEGVKMTVGSKDFTEQIVLGYVIEFAM-AAAGA 81
Query: 56 KTN--IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE----------------- 96
+ T + N ID+ Y ++
Sbjct: 82 DVRDLTNIQGSNSTRDAQLNGQIDLAYEYTGTGWINYLGNETPLPDSQAQFEAVRDADLA 141
Query: 97 EGSIKLVAENLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKKELGAKIYGI--EPGNEGNQ 153
+ Y LA++ G+K+ D AK + N
Sbjct: 142 ANDMVWTDPAPMNNTYALAMSKETAEKTGVKTVSDYAKLVESDPGAAVTCVETEFNVRQD 201
Query: 154 RILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN-IPAVFLSWEPHPINSDLNIHYL 212
+ F + I + + + L++ L
Sbjct: 202 GYPGLAAKYGFDASRAQRQILQTGI----IYQATADGDQCKFGEVFTTDGRIIALDLVLL 257
Query: 213 PGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQ 270
+ + + V++ D+ + P ++ ++ I + + E+ + + + ++
Sbjct: 258 DDDLQFF--PKYNPALVMKKDFAEAHPQVAEVMAPISERLTNEVMTELNRQVDVDGKEPA 315
Query: 271 FVGRTML 277
V R L
Sbjct: 316 DVARDWL 322
>gi|329999098|ref|ZP_08303304.1| ABC transporter, substrate-binding protein, QAT family [Klebsiella
sp. MS 92-3]
gi|328538459|gb|EGF64576.1| ABC transporter, substrate-binding protein, QAT family [Klebsiella
sp. MS 92-3]
Length = 305
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/282 (13%), Positives = 79/282 (28%), Gaps = 28/282 (9%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGIDIFM 80
+ P + T+ A M +LE G KT I+L PV ++ +DI+
Sbjct: 22 QAAEPGKVGSKIDTEGALLGNMIQQVLESH-GVKTINKIQLGTTPVVRGAIVAGELDIYP 80
Query: 81 GYWYPSLEKFIAPYLEEGS------------------IKLVAENLQGAKYMLAVNDVGFA 122
Y F + + + +AV
Sbjct: 81 EYTGNGAFFFKDENDPAWKNAQQGYEKVKRLDQEKHQLVWLTPAPANNTWTIAVRQDLAE 140
Query: 123 LGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ + K+ E + F+L +L+ + +
Sbjct: 141 KNKLTSLADLSRYLKQGGEFKLAASAEFIERPDALPAFEKAYGFNLNQNQLLSLAGGDTA 200
Query: 181 SQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
I+ + + +++ + L + L + + + VVR L P
Sbjct: 201 VTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV--QPIYAPTPVVREAVLKAYP 258
Query: 240 NISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
I+ L+ + ++ I QD + V L+
Sbjct: 259 QIADWLQPVFASLDEKTLQQLNARIAVEGQDAKRVAADYLQQ 300
>gi|302329811|gb|ADL20005.1| Glycine betaine/choline-binding protein of an ABC-type transport
system [Corynebacterium pseudotuberculosis 1002]
Length = 291
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/298 (13%), Positives = 85/298 (28%), Gaps = 28/298 (9%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP----VRFADTGWTDIAATTAMTSVILEEILGYKT 57
+I + + + + D + + + + LE+ GYK
Sbjct: 3 KRIAVLGVAMCLTACGSIESVDGGRTDSDAIVIGSQTYYSNEVIAEIYAQALEKA-GYKV 61
Query: 58 NIKL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
+ + V ++N ID+F Y P L+ + + AE L
Sbjct: 62 DRQFQIGQREVYMSEVENGSIDVFPEYSGPLLQYWKPDTTVRLPEAVYAELQSALPSSLQ 121
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIY-----------GIEPGNEGNQRILDMINNNKF 164
V + A SY +Y +E G K G E + +
Sbjct: 122 VLNQAEASDQDSYVVTKQYSEEHGIKSIQDLAKVKNITLGANSEAEDRPNGPKGLKSVYG 181
Query: 165 SLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEA 224
F IE S + ++ + + + P + N+ L + +
Sbjct: 182 VDAAFTPIEDSGGPLT---VKALKDGDIQLAIIYSADPSIAANNLVSLEDPKGQFL--AS 236
Query: 225 SVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
V + + +L + + + ++ + + + + L+ H
Sbjct: 237 RVVPLANKKLDAD---AAAVLNKVNAQLTTQDLIQLNTRSVTEQLPSALIAKEWLKAH 291
>gi|293410492|ref|ZP_06654068.1| amine ABC transporter [Escherichia coli B354]
gi|291470960|gb|EFF13444.1| amine ABC transporter [Escherichia coli B354]
Length = 305
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 41/312 (13%), Positives = 87/312 (27%), Gaps = 36/312 (11%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
K+ A L + + A PV+ T+ A + +LE G T ++
Sbjct: 5 KLWAGSLVMLAAVSLPLQAAS---PVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQ 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L PV ++ + +DI+ Y F +
Sbjct: 61 LGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDAAWKNAGQGYEKVKKLDAEQNKLIW 120
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMIN 160
+ + +AV + K+ E +
Sbjct: 121 LTPAPANNTWTIAVRQDVAEKNKLTSLADLSRYLKDGGTFKLAASAEFIERADALPAFEK 180
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + + +++ + L + L + +
Sbjct: 181 AYGFKLGQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV- 239
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ VVR L + P +++ L+ + ++ I D + V L
Sbjct: 240 -QPIYAPAPVVRESVLKEYPQMAQWLQPVFASLDEKTLQQLNASIAVEGLDAKKVAADYL 298
Query: 278 RTHPDLLKNWLI 289
+ K W
Sbjct: 299 KQ-----KGWTK 305
>gi|324015917|gb|EGB85136.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 117-3]
Length = 305
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/302 (12%), Positives = 86/302 (28%), Gaps = 31/302 (10%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
K+ A L + + A PV+ T+ A + +LE G T ++
Sbjct: 5 KLWAGSLVMLAAVSLPLQAAS---PVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQ 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L PV ++ + +DI+ Y F +
Sbjct: 61 LGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDAAWKNAQQGYEKVKKLDSEHNKLIW 120
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMIN 160
+ + +AV + + K+ E +
Sbjct: 121 LTPAPANNTWTIAVRQDVAEKNKLTSLADLSRYLQEGGTFKLAASAEFIERADALPAFEK 180
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + + +++ + L + L + +
Sbjct: 181 AYGFKLGQDQLLSLAGGDTAVTIKAAAQQISGVNAAMAYGTDGPVAALGLQTLSDPQGV- 239
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ VVR L + P +++ L+ + ++ I D + V L
Sbjct: 240 -QPIYAPAPVVRESVLKEYPQMAQWLQPVFASLDAKTLQQLNASIAVEGLDAKKVAADYL 298
Query: 278 RT 279
+
Sbjct: 299 KQ 300
>gi|270260947|ref|ZP_06189220.1| transporter [Serratia odorifera 4Rx13]
gi|270044431|gb|EFA17522.1| transporter [Serratia odorifera 4Rx13]
Length = 310
Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 42/283 (14%), Positives = 92/283 (32%), Gaps = 28/283 (9%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGIDIF 79
A + VR T+ + + +LE G KT ++L V ++ + ID++
Sbjct: 25 AQAADTVRVGSKIDTEGSLLGNIIVQVLESN-GIKTTNKLQLGTTKVLRGAITSGEIDVY 83
Query: 80 MGYWYP------------------SLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
Y EK ++ I +A + + +A+
Sbjct: 84 PEYTGNGAFFFSDEKDPAWKNAQAGFEKVKKLDYDKNKIVWLAASPANNTWTIAIRQDVA 143
Query: 122 AL-GIKSYQDIAKYKK-ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+K+ D++K+ K+ E + N F L +L+ + +
Sbjct: 144 DANHLKTLADLSKWINGGGKFKLAASAEFIERPDALPAFQNAYGFKLNQDQLLSLAGGDT 203
Query: 180 FSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
I+ + +++ + L + L + + + ++R L +
Sbjct: 204 AVTIKAAAEQTSGVNAAMAYGTDGPVAALGLQTLEDPKGV--QPIYAPAPIIREAALKQH 261
Query: 239 PNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
NI+ LL+ + ++ I QD + V L+
Sbjct: 262 ANIAELLQPVFASLDGPTLQKLNAQIAVEGQDAKQVAAAYLKE 304
>gi|146312372|ref|YP_001177446.1| substrate-binding region of ABC-type glycine betaine transport
system [Enterobacter sp. 638]
gi|145319248|gb|ABP61395.1| Substrate-binding region of ABC-type glycine betaine transport
system [Enterobacter sp. 638]
Length = 305
Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 40/279 (14%), Positives = 79/279 (28%), Gaps = 28/279 (10%)
Query: 26 TPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGIDIFMGYW 83
PV+ T+ A + +LE G KT ++L PV ++ + +DI+ Y
Sbjct: 25 EPVKVGSKIDTEGALLGNIILQVLESH-GVKTVNKVQLGTTPVVRGAITSGELDIYPEYT 83
Query: 84 YPSLEKFIAPYLEEGS------------------IKLVAENLQGAKYMLAVNDVGFALGI 125
F + + + +AV G
Sbjct: 84 GNGAFFFKDENDAAWKNASAGYEKVKKLDAEQNKLIWLTPAPANNTWTIAVRKDLAEKGK 143
Query: 126 KSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
+ D + K+ E + F L +L+ + + I
Sbjct: 144 LTSLDDLSRYLKDKGDFKLAASAEFIERPDALPAFEKAYDFKLDQKQLLSLAGGDTAVTI 203
Query: 184 RRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ + + +++ + L + L + + + VVR L P I
Sbjct: 204 KAAAQQTSGVNAAMAYGTDGPVAALGLQTLTDPKGV--QPIYAPAPVVREAVLKAYPQIG 261
Query: 243 RLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
LK + ++ I D + V L+
Sbjct: 262 DWLKPVFETLDEKTLQQLNASIAVEGLDAKKVAADYLKQ 300
>gi|193062344|ref|ZP_03043439.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Escherichia coli E22]
gi|194427128|ref|ZP_03059679.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Escherichia coli B171]
gi|209919590|ref|YP_002293674.1| putative glycine/betaine/choline ABC transporter substrate binding
component [Escherichia coli SE11]
gi|218695743|ref|YP_002403410.1| putative transporter subunit: periplasmic-binding component of ABC
superfamily [Escherichia coli 55989]
gi|260844738|ref|YP_003222516.1| putative transporter subunit [Escherichia coli O103:H2 str. 12009]
gi|300924494|ref|ZP_07140463.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 182-1]
gi|301325241|ref|ZP_07218759.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 78-1]
gi|192932010|gb|EDV84609.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Escherichia coli E22]
gi|194414749|gb|EDX31020.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Escherichia coli B171]
gi|209912849|dbj|BAG77923.1| putative glycine/betaine/choline ABC transporter substrate binding
component [Escherichia coli SE11]
gi|218352475|emb|CAU98252.1| putative transporter subunit: periplasmic-binding component of ABC
superfamily [Escherichia coli 55989]
gi|257759885|dbj|BAI31382.1| predicted transporter subunit [Escherichia coli O103:H2 str. 12009]
gi|300419303|gb|EFK02614.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 182-1]
gi|300847901|gb|EFK75661.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 78-1]
gi|320199725|gb|EFW74314.1| Osmoprotectant ABC transporter binding protein YehZ [Escherichia
coli EC4100B]
gi|323161759|gb|EFZ47640.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Escherichia coli E128010]
gi|324118028|gb|EGC11927.1| gyehZ [Escherichia coli E1167]
Length = 305
Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/302 (12%), Positives = 86/302 (28%), Gaps = 31/302 (10%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
K+ A L + + A PV+ T+ A + +LE G T ++
Sbjct: 5 KLWAGSLVMLAAVSLPLQAAS---PVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQ 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L PV ++ + +DI+ Y F +
Sbjct: 61 LGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDAAWKNAQQGYEKVKKLDSEHNKLIW 120
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMIN 160
+ + +AV + + K+ E +
Sbjct: 121 LTPAPANNTWTIAVRQDVAEKNKLTSLADLSRYLQEGGTFKLAASAEFIERADALPAFEK 180
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + + +++ + L + L + +
Sbjct: 181 AYGFKLGQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV- 239
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ VVR L + P +++ L+ + ++ I D + V L
Sbjct: 240 -QPIYAPAPVVRESVLKEYPQMAQWLQPVFASLDAKTLQQLNASIAVEGLDAKKVAADYL 298
Query: 278 RT 279
+
Sbjct: 299 KQ 300
>gi|226354831|ref|YP_002784571.1| glycine betaine ABC transporter periplasmic protein [Deinococcus
deserti VCD115]
gi|226316821|gb|ACO44817.1| putative glycine betaine ABC transporter, periplasmic component
[Deinococcus deserti VCD115]
Length = 301
Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 42/304 (13%), Positives = 87/304 (28%), Gaps = 35/304 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-- 58
M +IL + + + A PV + M + L+ G +
Sbjct: 1 MSRILILSTLVALAGSAAA------KPVVVGSKLDPEAQILGQMILLTLKNA-GIEVTDR 53
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYP-------------------SLEKFIAPYLEEGS 99
L V +++ ID++ Y ++
Sbjct: 54 TSLGDTGVNRKAILAGEIDVYPEYTGNAVYLFPKAKITPKQAGNPGTIYGLARQLDSRNG 113
Query: 100 IKLVAENLQGAKYMLAVNDVGFA-LGIKSYQDIAKYKKEL-GAKIYGIEPGNEGNQRILD 157
I + +++AV + S D+A+Y K KI G +
Sbjct: 114 ITWLKPAQVNNTWVIAVPQSLAQSARLSSVADLARYLKAGGKFKIAGSPEFFNRPDTMPA 173
Query: 158 MINNNKFSLKG-FRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
F L +L+ A +Q Q + +++ + L + L +
Sbjct: 174 FEAAYGFKLSSAQKLVLAGATPPQTQQAAAQGTSGVNAAMAYGTDGSLAALKMVALKDPK 233
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
++R++ L P I+ LL + + + + + Q V +
Sbjct: 234 GA--QAVYQPAVIIRTETLKANPQIATLLNRVFSTLNQNTMQGLNAQVALEGRSAQSVAQ 291
Query: 275 TMLR 278
L+
Sbjct: 292 AYLK 295
>gi|115359065|ref|YP_776203.1| glycine betaine transporter periplasmic subunit [Burkholderia
ambifaria AMMD]
gi|115284353|gb|ABI89869.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia ambifaria AMMD]
Length = 342
Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 37/309 (11%), Positives = 82/309 (26%), Gaps = 44/309 (14%)
Query: 22 ADSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFM 80
+R++ + T + ++ LGY+ + + + F+++ D+
Sbjct: 29 PGKGKTIRYSQGDSFGGNYVATQIVMAAMK-RLGYEVKLTTMNTTLFFQAVAQGDEDLAT 87
Query: 81 GYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKK---- 136
+P E ++ I + G ++ + K K
Sbjct: 88 DVNFPQRELAFRAVEKDAQIVGSGMIVGGGINGYLIDKKTADAYKITNLAQLKDPKLAAL 147
Query: 137 ---ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPA 193
+ A++ +PG + + + A + PA
Sbjct: 148 FGSDGKAQLISCDPGWSCGDVVDYQLKKFGLQDTVRA-VRGKYEALMVDTVARIKQGKPA 206
Query: 194 VFLSWEPHPINSD----LNIHYLPGGEEI---------------------------SGFG 222
F +W P S ++ +LP E
Sbjct: 207 FFYAWSPSWTVSSLVPGKDVVWLPTPEAALPPNMTNSGSPLVRGVKGCAGDADPCRMAMA 266
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQ---FVGRTMLRT 279
+ V ++ P I L++ IKF + I N + + +
Sbjct: 267 SWNWGAVGNRGFIAANPAIRSLIEQIKFPSTTWSSWEYAISKNGGTQALITQLAGDWMAG 326
Query: 280 HPDLLKNWL 288
+ L W+
Sbjct: 327 NKAQLDQWI 335
>gi|194289623|ref|YP_002005530.1| glycine/betaine ABC transporter substrate-binding protein
[Cupriavidus taiwanensis LMG 19424]
gi|193223458|emb|CAQ69463.1| putative ABC-type glycine betaine transport system,
Substrate-binding inner membrane component [Cupriavidus
taiwanensis LMG 19424]
Length = 493
Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 30/277 (10%), Positives = 69/277 (24%), Gaps = 18/277 (6%)
Query: 11 LTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRS 70
+ ++ + A + P+R +T+ + S + L + F +
Sbjct: 1 MLAAALGASLPARAADPLRVGSKRFTESYILGELLSQAAGPPGTAQHQPGLGNTAIVFAA 60
Query: 71 LKNKGIDIFMGYWYPSLEKFI---APYLEEGSIKLVAENLQGAKYMLAVNDVGF----AL 123
LK ID++ Y + + + + +A GA L +
Sbjct: 61 LKAGSIDLYPDYTGTLAAEILRLPPGAGLDEIRRALAPMGLGASIALGFENTYALAVSDA 120
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
S + ++ + ++ + + + L
Sbjct: 121 RAGSLRRLSDLAAQPRLRLGLSHEFLGRADGWPGLSSRYGLPQRPLGLDHGV-------A 173
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
+ + L + F V R D + P +
Sbjct: 174 YEALAAGQVDAIDIYSTDAKIRKYRLRVLED--DRHYFPRYDAVVVYRLDVPQRFPQAWQ 231
Query: 244 LLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
L+ + + S M + Q + R L
Sbjct: 232 ALQRLAGRVSAGDMIAMNAAAEIDGQPFAAIARAFLD 268
>gi|21221380|ref|NP_627159.1| permease binding-protein component [Streptomyces coelicolor A3(2)]
gi|4761217|gb|AAD29281.1|AF112365_4 ProXL [Streptomyces coelicolor A3(2)]
gi|5531382|emb|CAB51014.1| putative permease binding-protein component [Streptomyces
coelicolor A3(2)]
Length = 322
Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 28/283 (9%), Positives = 73/283 (25%), Gaps = 30/283 (10%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGID 77
+ +T+ A+ + E G + + T +++N D
Sbjct: 40 GKPLDGADLTVTSKEFTEQLVLGAIMGIAFEAA-GAEVLDRTGIQGSVGTRAAVENGDAD 98
Query: 78 IFMGYWYPSLEKFI----------------APYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
Y + ++ + + + Y LA+N +
Sbjct: 99 ATYEYTGTAWITYLGNSRPIPDPEQQWKAVKEADAKKGLTWLEPARLNNTYALAMNQANY 158
Query: 122 ALG-IKSYQDIAKYKKELGAKIYGI--EPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
K+ ++ K + + + SL + +
Sbjct: 159 KKYRTKTLSEVTALSKSDPGAVTLCVEGEFANRADGLPGLEKAYGMSLPAGNITQMDTGI 218
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
I + +N+ + ++ + +VR+ L K
Sbjct: 219 ----IYTQTAKGACTYGEVYTTDGRIKSMNLVVMEDDKKFF--PNYNAAPMVRTATLKKW 272
Query: 239 PNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
P I+ +L + + + + + + QD V ++
Sbjct: 273 PAIASVLDPVTRALTNDVAQTLNAKVDMDGQDPHQVALDWMKE 315
>gi|134292167|ref|YP_001115903.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia vietnamiensis G4]
gi|134135324|gb|ABO56438.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia vietnamiensis G4]
Length = 307
Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 41/290 (14%), Positives = 86/290 (29%), Gaps = 26/290 (8%)
Query: 13 TFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILE-EILGYKTNIKLLAVPVTFRSL 71
+ A A + TPV + T+ + + +L+ L I L P+ ++L
Sbjct: 14 FAAAVVAPGAHADTPVVVSSKIDTEGNLLGNVIAQVLKAHGLAVTEKIALGTTPIVRKAL 73
Query: 72 KNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKLVAENLQGAKYM 113
+ IDI+ Y + F + + +
Sbjct: 74 TSGEIDIYPEYTGNAAFFFNKADDPVWKNANQGYDTAKKLDYSANHLVWLTPAPANNTWG 133
Query: 114 LAVNDVGFAL-GIKSYQDIAKYKK-ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
+AV +K++ D+ K+ K+ + F LK +L
Sbjct: 134 VAVLAPVAQAQHLKTFSDLGKWVAGGGKIKLAASAEFVNSASALPSFEKAYGFKLKQDQL 193
Query: 172 IEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
+ S + + I+ + + + + + L + + V+
Sbjct: 194 VVLSGGDTAATIKAAANQTDGVNAAMVYGTDGGIASSGLVVLDD--DKHVQPVYAPTPVI 251
Query: 231 RSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
R L P I+ LK + + + I N + V + L+
Sbjct: 252 REAVLKAHPQIADYLKPVFASLDLKTLQSLNAQIQINGEPAAGVAKRYLK 301
>gi|260856105|ref|YP_003229996.1| putative transporter subunit [Escherichia coli O26:H11 str. 11368]
gi|260868834|ref|YP_003235236.1| putative transporter subunit [Escherichia coli O111:H- str. 11128]
gi|331653558|ref|ZP_08354559.1| putative transport system permease protein [Escherichia coli M718]
gi|257754754|dbj|BAI26256.1| predicted transporter subunit [Escherichia coli O26:H11 str. 11368]
gi|257765190|dbj|BAI36685.1| predicted transporter subunit [Escherichia coli O111:H- str. 11128]
gi|323152358|gb|EFZ38647.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Escherichia coli EPECa14]
gi|323176974|gb|EFZ62564.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Escherichia coli 1180]
gi|331048407|gb|EGI20483.1| putative transport system permease protein [Escherichia coli M718]
Length = 305
Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/302 (12%), Positives = 86/302 (28%), Gaps = 31/302 (10%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
K+ A L + + A PV+ T+ A + +LE G T ++
Sbjct: 5 KLWAGSLVMLAAVSLPLQAAS---PVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQ 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L PV ++ + +DI+ Y F +
Sbjct: 61 LGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDAAWKNAQQGYEKVKKLDSEHNKLIW 120
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMIN 160
+ + +AV + + K+ E +
Sbjct: 121 LTPAPANNTWTIAVRQDVAEKNKLTSLADLSRYLQEGGTFKLAASAEFIERADALPAFEK 180
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + + +++ + L + L + +
Sbjct: 181 AYGFKLGQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGSVAALGLQTLSDPQGV- 239
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ VVR L + P +++ L+ + ++ I D + V L
Sbjct: 240 -QPIYAPAPVVRESVLKEYPQMAQWLQPVFASLDAKTLQQLNASIAVEGLDAKKVAADYL 298
Query: 278 RT 279
+
Sbjct: 299 KQ 300
>gi|78061349|ref|YP_371257.1| ABC glycine betaine/choline transporter, periplasmic ligand binding
protein [Burkholderia sp. 383]
gi|77969234|gb|ABB10613.1| ABC glycine betaine/choline transporter, periplasmic ligand binding
protein [Burkholderia sp. 383]
Length = 307
Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 45/304 (14%), Positives = 91/304 (29%), Gaps = 29/304 (9%)
Query: 1 MYKILAVCLFLTTFSIS-YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-- 57
M L + F+ + A A + TPV + T+ + S +L+ G
Sbjct: 1 MKLALPARILGLAFAAAIVAPGAHADTPVVVSSKIDTEGNLLGNLISQVLKAH-GIAVTE 59
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------ 99
I L P+ ++L + IDI+ Y + F
Sbjct: 60 KIALGTTPIVRKALTSGEIDIYPEYTGNAAFFFNKADDPLWKNASQGYDTAKQLDFAANH 119
Query: 100 IKLVAENLQGAKYMLAVNDVGFA-LGIKSYQDIAKYKK-ELGAKIYGIEPGNEGNQRILD 157
+ + + +AV +K++ D K+ K+ +
Sbjct: 120 LVWLTPAPANNTWGVAVLAPVAQSQHLKTFSDFGKWVAGGGKVKLAASAEFVNSASALPS 179
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGE 216
F LK +L+ S + + I+ + + + + + L
Sbjct: 180 FEKAYGFKLKPDQLVVLSGGDTAATIKAAANQTDGVNAAMVYGTDGGIASSGLAVLDD-- 237
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ + V+R L P I+ LK + + + I N + V +
Sbjct: 238 DKHVQPVYAPAPVIREAVLKAHPQIADYLKPVFASLDLKTLQTLNARIQINGEPAAGVAK 297
Query: 275 TMLR 278
+ L+
Sbjct: 298 SYLK 301
>gi|170683010|ref|YP_001742993.1| quaternary amine ABC transporter periplasmic substrate-binding
protein [Escherichia coli SMS-3-5]
gi|170520728|gb|ACB18906.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Escherichia coli SMS-3-5]
Length = 305
Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 42/312 (13%), Positives = 87/312 (27%), Gaps = 36/312 (11%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
K+ A L L A PV+ T+ A + +LE G T ++
Sbjct: 5 KVWAGSLVLLAAVSLPLHAAS---PVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQ 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L PV ++ + +DI+ Y F +
Sbjct: 61 LGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDTAWKNAGQGYEKVKKLDAEQNKLIW 120
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMIN 160
+ + +AV + + K+ E +
Sbjct: 121 LTPAPANNTWTIAVRQDVAEKNKLTSLADLSRYLQEGGTFKLAASAEFIERADALPAFEK 180
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + + +++ + L + L + +
Sbjct: 181 AYGFKLGQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV- 239
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ VVR L + P +++ L+ + ++ I D + V L
Sbjct: 240 -QPIYAPAPVVRESVLKEYPQMAQWLQPVFASLDEKTLQQLNASIAVEGLDAKKVAADYL 298
Query: 278 RTHPDLLKNWLI 289
+ K W
Sbjct: 299 KQ-----KGWTK 305
>gi|283832443|ref|ZP_06352184.1| putative ABC transporter, periplasmic substrate-binding protein
[Citrobacter youngae ATCC 29220]
gi|291072103|gb|EFE10212.1| putative ABC transporter, periplasmic substrate-binding protein
[Citrobacter youngae ATCC 29220]
Length = 305
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 43/304 (14%), Positives = 90/304 (29%), Gaps = 33/304 (10%)
Query: 11 LTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTF 68
+ + + +PV T+ A + +LE G KT ++L PV
Sbjct: 10 SLALLAAISTPLQAASPVTVGSKIDTEGALLGNIILQVLESH-GVKTVNKVQLGTTPVVR 68
Query: 69 RSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKLVAENLQGA 110
++ + +DI+ Y F + +
Sbjct: 69 GAITSGELDIYPEYTGNGAFFFKDENDPAWKNAQAGFDKVKKLDAEQNKLVWLTPAPANN 128
Query: 111 KYMLAVNDVGFALG-IKSYQDIAKYKKEL-GAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
+ +AV + S D+ +Y KE K+ E + +F L
Sbjct: 129 TWTIAVRQDVAQKNKLVSLADLGRYLKEGGTFKLAASAEFIERADALPAFEKAYEFKLNQ 188
Query: 169 FRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
+L+ + + I+ + + +++ + L + L + + +
Sbjct: 189 DQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV--QPIYAPA 246
Query: 228 TVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLK 285
VVR L P + L+ + ++ I D + V L+ K
Sbjct: 247 PVVRESVLKAYPQMEEWLQPVFASLDEKTLQQLNASIAVEGLDAKKVAADYLKQ-----K 301
Query: 286 NWLI 289
W+
Sbjct: 302 GWVK 305
>gi|107025583|ref|YP_623094.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia cenocepacia AU 1054]
gi|116693234|ref|YP_838767.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia cenocepacia HI2424]
gi|170737500|ref|YP_001778760.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia cenocepacia MC0-3]
gi|206564218|ref|YP_002234981.1| putative ABC transportrt exported protein [Burkholderia cenocepacia
J2315]
gi|105894957|gb|ABF78121.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia cenocepacia AU 1054]
gi|116651234|gb|ABK11874.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia cenocepacia HI2424]
gi|169819688|gb|ACA94270.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia cenocepacia MC0-3]
gi|198040258|emb|CAR56243.1| putative ABC transport system, exported protein [Burkholderia
cenocepacia J2315]
Length = 307
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 45/305 (14%), Positives = 93/305 (30%), Gaps = 29/305 (9%)
Query: 1 MYKILAVCLFLTTFSIS-YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-- 57
M L + F+ + A A + TPV + T+ + S +L+ G
Sbjct: 1 MKLALPARILGLAFAAAIVAPGAHADTPVVVSSKIDTEGNLLGNLISQVLKAH-GIPVTE 59
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------ 99
I L P+ ++L + ID++ Y + F
Sbjct: 60 KIALGTTPIVRKALTSGEIDVYPEYTGNAAFFFNKADDPVWKNASQGYDTAKKLDYAANH 119
Query: 100 IKLVAENLQGAKYMLAVNDVGFA-LGIKSYQDIAKYKK-ELGAKIYGIEPGNEGNQRILD 157
+ +A + +A+ +K++ D K+ K+ +
Sbjct: 120 LVWLAPAPANNTWGVALLAPVAQSQHLKTFSDFGKWVAGGGKVKLAASAEFVNSASALPS 179
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGE 216
F LK +L+ S + + I+ + + + + + L
Sbjct: 180 FEKAYGFKLKPEQLVVLSGGDTAATIKAAANQTDGVNAAMVYGTDGGIASSGLAVLDD-- 237
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ + V+R L P I+ LLK + + + I N + V +
Sbjct: 238 DKHVQPVYAPAPVIREAALKAHPQIADLLKPVFASLDLKTLQSLNARIQLNGEPAAGVAK 297
Query: 275 TMLRT 279
+ L+
Sbjct: 298 SYLKA 302
>gi|317491250|ref|ZP_07949686.1| osmoprotectant transport system substrate-binding protein
[Enterobacteriaceae bacterium 9_2_54FAA]
gi|316920797|gb|EFV42120.1| osmoprotectant transport system substrate-binding protein
[Enterobacteriaceae bacterium 9_2_54FAA]
Length = 310
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 49/304 (16%), Positives = 96/304 (31%), Gaps = 31/304 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--N 58
M + + L L SI A+ AD+ V T+ + + L+ G KT
Sbjct: 7 MGRKILASLALMGASICAAQAADA---VTVGSKIDTEGSLLGNLIVQTLDAN-GIKTVNK 62
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------I 100
+L V ++ IDI+ Y F I
Sbjct: 63 TQLGTTKVLRGAITAGEIDIYPEYTGNGAFFFADENDPAWKNAQQGYDKVKQLDLAKNQI 122
Query: 101 KLVAENLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKKEL-GAKIYGIEPGNEGNQRILDM 158
+ + +AV + ++S +D+ K+ K+ K+ E +
Sbjct: 123 VWLTPAPANNTWSIAVRNDIAQQNHLESLEDLGKWLKQGGKFKLAASAEFIERPDALPAF 182
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEE 217
N F L +L+ + + I+ + +++ + L + L +
Sbjct: 183 ENAYGFKLDQDQLLSLAGGDTAVTIKAAAEQTSGVNGAMAYGTDGPVAALGLKTLSDPKG 242
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
+ + +VR L P I+ +LK + ++ I + QD + V
Sbjct: 243 V--QPIYAPTPIVREATLKAHPEIATVLKPVFESLDGPTLQKLNAKIAVDGQDAKKVAAK 300
Query: 276 MLRT 279
L+
Sbjct: 301 YLKD 304
>gi|29831687|ref|NP_826321.1| ABC transporter substrate-binding protein [Streptomyces avermitilis
MA-4680]
gi|29608803|dbj|BAC72856.1| putative ABC transporter substrate-binding protein [Streptomyces
avermitilis MA-4680]
Length = 320
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 35/320 (10%), Positives = 80/320 (25%), Gaps = 48/320 (15%)
Query: 1 MYK--ILAVCLFLTTFSISYARDADSCTPVRFAD----------------TGWTDIAATT 42
M + +L + + + VR +T+
Sbjct: 1 MRRGCLLLAGVLVAAAGCGLTSGSPMVDDVRPGSIGKGEPLKGAHLTVTSKEFTEQLILG 60
Query: 43 AMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFI--------- 91
A+ + + G + ++KN D Y + ++
Sbjct: 61 AIMGIAFQAA-GADVLDRTGIQGSVGAREAVKNGDADGMYEYTGTAWITYLGNSEPITDP 119
Query: 92 -------APYLEEGSIKLVAENLQGAKYMLAVNDV-GFALGIKSYQDIAKYKKELGAKIY 143
+ + +A + Y LA+N G K+ D+A K +
Sbjct: 120 LKQWQAVRDADLKNGVTWLAPSTLNNTYALAMNQANFKKYGTKTLSDVAALAKRDPKAVT 179
Query: 144 GI--EPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPH 201
+ M L + + I +
Sbjct: 180 LCVESEFANRADGLPGMEKAYGMKLPAADITQMDTGI----IYTQVAKGSCTYGEVFTTD 235
Query: 202 PINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKN--IKFSVALENEMM 259
+N+ + ++ +V + + L K P I+ +L K + ++
Sbjct: 236 GRIKSMNLVVMRDDKKFF--PNYNVAPEINTKALKKYPAIAEVLDPVTRKLDNTVAQDLN 293
Query: 260 KLILNNKQDRQFVGRTMLRT 279
+ + QD V ++
Sbjct: 294 AKVDVDGQDPHQVALDWMKE 313
>gi|75416471|sp|Q9L4K3|ORF1_CHRSD RecName: Full=Uncharacterized protein ORF1; Flags: Precursor
gi|7228268|emb|CAB77173.1| unnamed protein product [Halomonas elongata]
Length = 155
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 55/152 (36%), Positives = 89/152 (58%), Gaps = 3/152 (1%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+ L+ ++ A C+ VRFA+ GWTDI TTA+ S +LE LGY+ +
Sbjct: 6 KRRLSALFVTAFLPVT--AFASECSSVRFAEVGWTDITVTTALASEVLEA-LGYEPRVDT 62
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
++VP+ + ++N D+F+G W PS+ PY+E G ++ + NL+GAKY LAV +
Sbjct: 63 VSVPIAYAGIRNNDFDVFLGNWMPSMASISDPYIERGEVERLVANLEGAKYTLAVPQYVY 122
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQ 153
G+ S D+A++ + +I+GIE GN+GN+
Sbjct: 123 DAGVTSVNDLAEHADQFEQRIHGIEAGNDGNE 154
>gi|82543549|ref|YP_407496.1| transport system permease protein [Shigella boydii Sb227]
gi|81244960|gb|ABB65668.1| putative transport system permease protein [Shigella boydii Sb227]
gi|320184842|gb|EFW59632.1| Osmoprotectant ABC transporter binding protein YehZ [Shigella
flexneri CDC 796-83]
gi|332097541|gb|EGJ02521.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Shigella boydii 3594-74]
Length = 305
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 41/312 (13%), Positives = 88/312 (28%), Gaps = 36/312 (11%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
K+ A L + + A PV+ T+ A + +LE G T ++
Sbjct: 5 KVWAGSLVMLAAVSLPLQAAS---PVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQ 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L PV ++ + +DI+ Y F +
Sbjct: 61 LGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDAAWKNAQQGYEKVKKLDSEHNKLIW 120
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMIN 160
+ + +AV + + K+ E +
Sbjct: 121 LTPAPANNTWTIAVRQDVAEKNKLTSLADLSRYLKEGGTFKLAASAEFIERADALPAFEK 180
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + + +++ + L + L + +
Sbjct: 181 AYGFKLGQDQLLSLAGGDTAVTIKAAAQQISGVNAAMAYGTDGPVAALGLQTLSDPQGV- 239
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ VVR L + P +++ L+ + ++ I D + V L
Sbjct: 240 -QPIYAPAPVVRESVLKEYPQMAQWLQPVFASLDAKTLQQLNASIAVEGLDAKKVAADYL 298
Query: 278 RTHPDLLKNWLI 289
+ K W
Sbjct: 299 KQ-----KGWTK 305
>gi|291008888|ref|ZP_06566861.1| glycine betaine/carnitine/choline binding protein precursor
[Saccharopolyspora erythraea NRRL 2338]
Length = 318
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 31/309 (10%), Positives = 80/309 (25%), Gaps = 40/309 (12%)
Query: 4 ILAVCLFLTTFSISYARDADSCTP--------VRFADTGWTDIAATTAMTSVILEEILGY 55
++ C + ++ S P + +T+ + + L + G
Sbjct: 5 LVGGCGLSSGSAVPLPVAPGSIRPVPELEGVRITVGSKDFTEQIVLSYIAQFAL-DAAGA 63
Query: 56 KTN--IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKF------------IAPYLEEGSIK 101
+ +L + ID+ Y S + + + ++
Sbjct: 64 NVRDLSNITGSASARNALASGQIDVLWEYTGSSWISYNGNTDPIPDARRQYEAVRKLDLE 123
Query: 102 LVAENLQ------GAKYMLAVNDVGFALGIKSYQDIAKY---KKELGAKIYGIEPGNEGN 152
+ Y A+ S + + A N
Sbjct: 124 RNGIDWTAVTFDVDNTYAFAMTQEAAKRLGVSKLSDVRRVVAENPQDATFCVDTEFASRN 183
Query: 153 QRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYL 212
+ + F ++ + I + + + LN+ L
Sbjct: 184 DGMPGVEQTYGFRADPAKIKTLTSG----SIYQATASGTCTFGEVFTTDGRIRSLNLKVL 239
Query: 213 PGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQ 270
+ F ++ +R+D L + P I+ +L + + + ++ + +D
Sbjct: 240 DD--DRLFFPRYNLGVTLRADMLRQYPQITDVLAPVSAQLNNVELMKLNAQVDVEGRDPA 297
Query: 271 FVGRTMLRT 279
V R +
Sbjct: 298 DVARDWMVE 306
>gi|110806110|ref|YP_689630.1| putative transport system permease [Shigella flexneri 5 str. 8401]
gi|110615658|gb|ABF04325.1| putative transport system permease protein [Shigella flexneri 5
str. 8401]
Length = 305
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/302 (12%), Positives = 86/302 (28%), Gaps = 31/302 (10%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
K+ A L + + A PV+ T+ A + +LE G T ++
Sbjct: 5 KLWAGSLVMLAAVSLPLQAAS---PVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQ 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L PV ++ + +DI+ Y F +
Sbjct: 61 LGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDAAWKNAGQGYEKVKKLDAEHNKLIW 120
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMIN 160
+ + +AV + + K+ E +
Sbjct: 121 LTPAPANNTWTIAVRQDVAEKNKLTSLADLSRYLQEGGTFKLAASAEFIERADALPTFEK 180
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + + +++ + L + L + +
Sbjct: 181 AYGFKLGQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV- 239
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ VVR L + P +++ L+ + ++ I D + V L
Sbjct: 240 -QPIYAPAPVVRESVLKEYPQMAQWLQPVFASLDAKTLQQLNASIAVEGLDAKKVAADYL 298
Query: 278 RT 279
+
Sbjct: 299 KQ 300
>gi|333002846|gb|EGK22402.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Shigella flexneri K-272]
gi|333016850|gb|EGK36174.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Shigella flexneri K-227]
Length = 305
Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats.
Identities = 39/302 (12%), Positives = 86/302 (28%), Gaps = 31/302 (10%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
K+ A L + + A PV+ T+ A + +LE G T ++
Sbjct: 5 KLWAGSLVMLAAVSLPLQAAS---PVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQ 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L PV ++ + +DI+ Y F +
Sbjct: 61 LGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDAAWKNAGQGYEKVKKLDAEHNKLIW 120
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMIN 160
+ + +AV + + K+ E +
Sbjct: 121 LTPAPANNTWTIAVRQDVAEKNKLTSLADLSRYLQEGGTFKLAASAEFIERADALPAFEK 180
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + + +++ + L + L + +
Sbjct: 181 AYGFKLGQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV- 239
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ VVR L + P +++ L+ + ++ I D + V L
Sbjct: 240 -QPIYAPAPVVRESVLKEYPQMAQWLQPVFASLDAKTLQQLNASIAVEGLDAKKVAADYL 298
Query: 278 RT 279
+
Sbjct: 299 KQ 300
>gi|238753363|ref|ZP_04614726.1| hypothetical protein yruck0001_18890 [Yersinia ruckeri ATCC 29473]
gi|238708316|gb|EEQ00671.1| hypothetical protein yruck0001_18890 [Yersinia ruckeri ATCC 29473]
Length = 310
Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats.
Identities = 40/300 (13%), Positives = 86/300 (28%), Gaps = 29/300 (9%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEE-ILGYKTNIKLL 62
I A+ + + A ADS VR T+ + + +LE + +L
Sbjct: 10 IFALATIMLSLGSGLAHAADS---VRVGSKIDTEGSLLGNIIVQVLEANNIKTTNKSQLG 66
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAEN---------------- 106
V ++ IDI+ Y F N
Sbjct: 67 TTKVVRAAMTAGEIDIYPEYTGNGAFFFSDEKDPAWKNAQAGYNKVKALDYEKNRLVWLE 126
Query: 107 --LQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKE-LGAKIYGIEPGNEGNQRILDMINNN 162
+ +A+ +K+ D+ ++ + K+ E +
Sbjct: 127 AAPANNSWTIAIRQDLASQNNLKTLDDLGQWVRSGGKFKLAASAEFIERPDALPAFEQAY 186
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
F L +L+ + + I+ + +++ + L + L + +
Sbjct: 187 GFKLSQDQLLSLAGGDTAVTIKAAAEQTSGVNAAMAYGTDGPVAALGLQTLADPKGV--Q 244
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+ ++R L + P I +L + ++ I QD + V L+
Sbjct: 245 PIYAPAPIIREVTLKQHPTIPAILNPVFATLDGPTLQKLNARIAVEGQDAKKVAANYLKE 304
>gi|134096698|ref|YP_001102359.1| glycine betaine/carnitine/choline binding protein precursor
[Saccharopolyspora erythraea NRRL 2338]
gi|133909321|emb|CAL99433.1| possible glycine betaine/carnitine/choline binding protein
precursor [Saccharopolyspora erythraea NRRL 2338]
Length = 331
Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats.
Identities = 31/309 (10%), Positives = 80/309 (25%), Gaps = 40/309 (12%)
Query: 4 ILAVCLFLTTFSISYARDADSCTP--------VRFADTGWTDIAATTAMTSVILEEILGY 55
++ C + ++ S P + +T+ + + L + G
Sbjct: 18 LVGGCGLSSGSAVPLPVAPGSIRPVPELEGVRITVGSKDFTEQIVLSYIAQFAL-DAAGA 76
Query: 56 KTN--IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKF------------IAPYLEEGSIK 101
+ +L + ID+ Y S + + + ++
Sbjct: 77 NVRDLSNITGSASARNALASGQIDVLWEYTGSSWISYNGNTDPIPDARRQYEAVRKLDLE 136
Query: 102 LVAENLQ------GAKYMLAVNDVGFALGIKSYQDIAKY---KKELGAKIYGIEPGNEGN 152
+ Y A+ S + + A N
Sbjct: 137 RNGIDWTAVTFDVDNTYAFAMTQEAAKRLGVSKLSDVRRVVAENPQDATFCVDTEFASRN 196
Query: 153 QRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYL 212
+ + F ++ + I + + + LN+ L
Sbjct: 197 DGMPGVEQTYGFRADPAKIKTLTSG----SIYQATASGTCTFGEVFTTDGRIRSLNLKVL 252
Query: 213 PGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQ 270
+ F ++ +R+D L + P I+ +L + + + ++ + +D
Sbjct: 253 DD--DRLFFPRYNLGVTLRADMLRQYPQITDVLAPVSAQLNNVELMKLNAQVDVEGRDPA 310
Query: 271 FVGRTMLRT 279
V R +
Sbjct: 311 DVARDWMVE 319
>gi|16130069|ref|NP_416635.1| predicted transporter subunit: periplasmic-binding component of ABC
superfamily [Escherichia coli str. K-12 substr. MG1655]
gi|89108948|ref|AP_002728.1| predicted transporter subunit [Escherichia coli str. K-12 substr.
W3110]
gi|170081754|ref|YP_001731074.1| ABC transporter periplasmic-binding protein [Escherichia coli str.
K-12 substr. DH10B]
gi|194436162|ref|ZP_03068264.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Escherichia coli 101-1]
gi|238901315|ref|YP_002927111.1| putative transporter subunit: periplasmic-binding component of ABC
superfamily [Escherichia coli BW2952]
gi|253772941|ref|YP_003035772.1| substrate-binding region of ABC-type glycine betaine transporter
[Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|254162146|ref|YP_003045254.1| putative transporter subunit periplasmic-binding component of ABC
superfamily [Escherichia coli B str. REL606]
gi|297519672|ref|ZP_06938058.1| predicted transporter subunit: periplasmic-binding component of ABC
superfamily protein [Escherichia coli OP50]
gi|300929306|ref|ZP_07144780.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 187-1]
gi|300955847|ref|ZP_07168188.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 175-1]
gi|301029466|ref|ZP_07192553.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 196-1]
gi|465593|sp|P33362|OSMF_ECOLI RecName: Full=Putative osmoprotectant uptake system
substrate-binding protein osmF; Flags: Precursor
gi|405862|gb|AAA60494.1| yehZ [Escherichia coli]
gi|1788452|gb|AAC75192.1| predicted transporter subunit: periplasmic-binding component of ABC
superfamily [Escherichia coli str. K-12 substr. MG1655]
gi|85675245|dbj|BAE76608.1| predicted transporter subunit [Escherichia coli str. K12 substr.
W3110]
gi|169889589|gb|ACB03296.1| predicted transporter subunit: periplasmic-binding component of ABC
superfamily [Escherichia coli str. K-12 substr. DH10B]
gi|194424890|gb|EDX40875.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Escherichia coli 101-1]
gi|238863246|gb|ACR65244.1| predicted transporter subunit: periplasmic-binding component of ABC
superfamily [Escherichia coli BW2952]
gi|242377773|emb|CAQ32536.1| OsmF, subunit of YehW/YehX/YehY/YehZ ABC transporter [Escherichia
coli BL21(DE3)]
gi|253323985|gb|ACT28587.1| Substrate-binding region of ABC-type glycine betaine transport
system [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|253974047|gb|ACT39718.1| predicted transporter subunit: periplasmic-binding component of ABC
superfamily [Escherichia coli B str. REL606]
gi|253978215|gb|ACT43885.1| predicted transporter subunit: periplasmic-binding component of ABC
superfamily [Escherichia coli BL21(DE3)]
gi|260448773|gb|ACX39195.1| Substrate-binding region of ABC-type glycine betaine transport
system [Escherichia coli DH1]
gi|299877669|gb|EFI85880.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 196-1]
gi|300317314|gb|EFJ67098.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 175-1]
gi|300462725|gb|EFK26218.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 187-1]
gi|309702445|emb|CBJ01771.1| ABC transporter, substrate-binding protein [Escherichia coli ETEC
H10407]
gi|315136764|dbj|BAJ43923.1| putative transporter subunit:periplasmic-binding component of ABC
superfamily [Escherichia coli DH1]
gi|323940800|gb|EGB36988.1| gyehZ [Escherichia coli E482]
gi|323961639|gb|EGB57244.1| gyehZ [Escherichia coli H489]
gi|323972885|gb|EGB68083.1| gyehZ [Escherichia coli TA007]
gi|744169|prf||2014253AC yehZ gene
Length = 305
Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats.
Identities = 41/312 (13%), Positives = 88/312 (28%), Gaps = 36/312 (11%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
K+ A L + + A PV+ T+ A + +LE G T ++
Sbjct: 5 KLWAGSLVMLAAVSLPLQAAS---PVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQ 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L PV ++ + +DI+ Y F +
Sbjct: 61 LGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDAAWKNAQQGYEKVKKLDSEHNKLIW 120
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMIN 160
+ + +AV + + K+ E +
Sbjct: 121 LTPAPANNTWTIAVRQDVAEKNKLTSLADLSRYLQEGGTFKLAASAEFIERADALPAFEK 180
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + + +++ + L + L + +
Sbjct: 181 AYGFKLGQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV- 239
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ VVR L + P +++ L+ + ++ I D + V L
Sbjct: 240 -QPIYAPAPVVRESVLREYPQMAQWLQPVFASLDAKTLQQLNASIAVEGLDAKKVAADYL 298
Query: 278 RTHPDLLKNWLI 289
+ K W
Sbjct: 299 KQ-----KGWTK 305
>gi|34499847|ref|NP_904062.1| ABC transporter [Chromobacterium violaceum ATCC 12472]
gi|34105697|gb|AAQ62051.1| probable ABC transporter [Chromobacterium violaceum ATCC 12472]
Length = 305
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 43/295 (14%), Positives = 92/295 (31%), Gaps = 28/295 (9%)
Query: 9 LFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPV 66
+ I A A + VR T+ A + +LE G KT + L V
Sbjct: 8 IAALLAGILTAATACAADAVRVGSKIDTEGALLGNLIQQVLEAH-GVKTEGRLSLGNTKV 66
Query: 67 TFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKLVAENLQ 108
++ IDI+ Y F I +A
Sbjct: 67 VRTAIAAGEIDIYPEYTGNGAFFFSDEKNPAWKSAAAGYQRVKQLDYDKNRIVWLAPAPA 126
Query: 109 GAKYMLAVNDVGFALG-IKSYQDIAKYKKE-LGAKIYGIEPGNEGNQRILDMINNNKFSL 166
+ +AV +++ D+ + K+ E + N F L
Sbjct: 127 NNTWTIAVRRDVADANRLRTLADLGAWLGRGGRFKLAASAEFIERPDALPAFQNAYGFKL 186
Query: 167 KGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEAS 225
+ +L+ + + + ++ + +++ + L + L + + +
Sbjct: 187 RQDQLLALAGGDTSATVKAAAEQTSGVNAAMAYGTDGPVAALGLVALADPKGV--QPVYA 244
Query: 226 VYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
++R+D L + P+I+ LK + A ++ I ++ + V L+
Sbjct: 245 PTPIIRADALARHPDIAVWLKPVFQSLDAATLQKLNASIALEGRNARQVAAGYLK 299
>gi|331663627|ref|ZP_08364537.1| putative transport system permease protein [Escherichia coli TA143]
gi|331059426|gb|EGI31403.1| putative transport system permease protein [Escherichia coli TA143]
Length = 305
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 42/312 (13%), Positives = 88/312 (28%), Gaps = 36/312 (11%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
K+ A L + + A PV+ T+ A + +LE G T ++
Sbjct: 5 KLWAGSLVMLAVVSLPLQAAS---PVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQ 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L PV ++ + +DI+ Y F +
Sbjct: 61 LGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDAAWKNAGQGYEKVKKLDAEQNKLIW 120
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMIN 160
+ + +AV + + K+ E +
Sbjct: 121 LTPAPANNTWTIAVRQDVAEKNKLTSLADLSRYLKEGGTFKLAASAEFIERADALPAFEK 180
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + + +++ + L + L + +
Sbjct: 181 AYDFKLDQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV- 239
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ VVR L + P +++ L+ + ++ I D Q V L
Sbjct: 240 -QPIYAPAPVVRESVLKEYPQMAQWLQPVFASLDEKTLQQLNASIAVEGLDAQKVAADYL 298
Query: 278 RTHPDLLKNWLI 289
+ K W
Sbjct: 299 KQ-----KGWTK 305
>gi|330821149|ref|YP_004350011.1| glycine betaine transporter periplasmic subunit [Burkholderia
gladioli BSR3]
gi|327373144|gb|AEA64499.1| glycine betaine transporter periplasmic subunit [Burkholderia
gladioli BSR3]
Length = 343
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 36/338 (10%), Positives = 93/338 (27%), Gaps = 49/338 (14%)
Query: 1 MYKILAVCLFLTTFSISYARD-----ADSCTPVRFADTGWTDI-AATTAMTSVILEEILG 54
+ LA + F+ A + + +A T + +T L+ +G
Sbjct: 4 LKPALAALACVAMFATGGATASAADLPGAGKTINYAQTDGLGANYVSVQITIKALKA-MG 62
Query: 55 YKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
Y+ +K + + F+++ +D+ +P + + + G
Sbjct: 63 YEVKLKTMGTVLFFQAVAQGDVDLETDVNFPQSDPDFRAVQDRAVQVGRGQIDGGGINGY 122
Query: 115 AVNDVGFALGIKSYQDIAKYKK-------ELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
++ + + K K + A++ +PG + + ++
Sbjct: 123 LIDRKTALAHNITSLEQMKDPKIAALFGNDGKAQLISCDPGWSCGEVVNYQLDKFGLRQT 182
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP----INSDLNIHYLPGGEEI----- 218
+ + A + + + PA F +W P + ++ +LP +
Sbjct: 183 -VKPVTGKYEALMADVVSRIKGGEPAFFYAWSPSWTTSELVPGKDVVWLPTPADALPPNV 241
Query: 219 ----------------------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALEN 256
+ V D++ + L++ I F + +
Sbjct: 242 PNAGSALVKDVPGCAGGANPCRMAMASWNYSAVANKDFIAANAPVRALVEQIHFPSSTWS 301
Query: 257 EMMKLILNNKQDRQFV---GRTMLRTHPDLLKNWLIGV 291
I V + + W+
Sbjct: 302 NWELAISQAHGSSAIVTTLAEQWIAANKASFDQWVAAA 339
>gi|218699259|ref|YP_002406888.1| putative ABC transporter periplasmic-binding protein [Escherichia
coli IAI39]
gi|218369245|emb|CAR17002.1| putative transporter subunit: periplasmic-binding component of ABC
superfamily [Escherichia coli IAI39]
Length = 305
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 42/312 (13%), Positives = 87/312 (27%), Gaps = 36/312 (11%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
K+ A L L A PV+ T+ A + +LE G T ++
Sbjct: 5 KVWAGSLVLLAAVSLPLHAAS---PVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQ 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L PV ++ + +DI+ Y F +
Sbjct: 61 LGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDTAWKNAQQGYEKVKKLDAEQNKLIW 120
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMIN 160
+ + +AV + + K+ E +
Sbjct: 121 LTPAPANNTWTIAVRQDVAEKNKLTSLADLSRYLKEGGTFKLAASAEFIERADALPAFEK 180
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + + +++ + L + L + +
Sbjct: 181 AYGFKLGQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV- 239
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ VVR L + P +++ L+ + ++ I D + V L
Sbjct: 240 -QPIYAPAPVVRESVLKEYPQMAQWLQPVFASLDAKTLQQLNASIAVEGLDAKKVAADYL 298
Query: 278 RTHPDLLKNWLI 289
+ K W
Sbjct: 299 KQ-----KGWTK 305
>gi|293415415|ref|ZP_06658058.1| osmoprotectant transport system substrate-binding protein
[Escherichia coli B185]
gi|291433063|gb|EFF06042.1| osmoprotectant transport system substrate-binding protein
[Escherichia coli B185]
Length = 305
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 41/312 (13%), Positives = 88/312 (28%), Gaps = 36/312 (11%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
K+ A L + + A PV+ T+ A + +LE G T ++
Sbjct: 5 KVWAGSLVMLAAVSLPLQAAS---PVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQ 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L PV ++ + +DI+ Y F +
Sbjct: 61 LGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDAAWKNAQQGYEKVKKLDAEQNKLIW 120
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMIN 160
+ + +AV + + K+ E +
Sbjct: 121 LTPAPANNTWTIAVRQDVAEKNKLTSLADLSRYLKEGGTFKLAASAEFIERADALPAFEK 180
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + + +++ + L + L + +
Sbjct: 181 AYGFKLGQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV- 239
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ VVR L + P +++ L+ + ++ I D + V L
Sbjct: 240 -QPIYAPAPVVRESVLKEYPQMAQWLQPVFASLDEKTLQQLNASIAVEGLDAKKVAADYL 298
Query: 278 RTHPDLLKNWLI 289
+ K W
Sbjct: 299 KQ-----KGWTK 305
>gi|15802681|ref|NP_288708.1| putative transport system permease protein [Escherichia coli
O157:H7 EDL933]
gi|15832272|ref|NP_311045.1| transport system permease protein [Escherichia coli O157:H7 str.
Sakai]
gi|168750502|ref|ZP_02775524.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Escherichia coli O157:H7 str.
EC4113]
gi|168757704|ref|ZP_02782711.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Escherichia coli O157:H7 str.
EC4401]
gi|168764221|ref|ZP_02789228.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Escherichia coli O157:H7 str.
EC4501]
gi|168771596|ref|ZP_02796603.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Escherichia coli O157:H7 str.
EC4486]
gi|168777292|ref|ZP_02802299.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Escherichia coli O157:H7 str.
EC4196]
gi|168783700|ref|ZP_02808707.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Escherichia coli O157:H7 str.
EC4076]
gi|168788932|ref|ZP_02813939.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Escherichia coli O157:H7 str.
EC869]
gi|168801189|ref|ZP_02826196.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Escherichia coli O157:H7 str.
EC508]
gi|195935502|ref|ZP_03080884.1| putative transport system permease protein [Escherichia coli
O157:H7 str. EC4024]
gi|208806608|ref|ZP_03248945.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Escherichia coli O157:H7 str.
EC4206]
gi|208812116|ref|ZP_03253445.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Escherichia coli O157:H7 str.
EC4045]
gi|208820189|ref|ZP_03260509.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Escherichia coli O157:H7 str.
EC4042]
gi|209399202|ref|YP_002271533.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Escherichia coli O157:H7 str.
EC4115]
gi|217327410|ref|ZP_03443493.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Escherichia coli O157:H7 str.
TW14588]
gi|254794024|ref|YP_003078861.1| putative ABC transporter periplasmic-binding protein [Escherichia
coli O157:H7 str. TW14359]
gi|261223415|ref|ZP_05937696.1| predicted transporter subunit: periplasmic-binding component of ABC
superfamily protein [Escherichia coli O157:H7 str.
FRIK2000]
gi|261259035|ref|ZP_05951568.1| predicted transporter subunit: periplasmic-binding component of ABC
superfamily protein [Escherichia coli O157:H7 str.
FRIK966]
gi|12516436|gb|AAG57263.1|AE005444_13 putative transport system permease protein [Escherichia coli
O157:H7 str. EDL933]
gi|13362487|dbj|BAB36441.1| putative transport system permease protein [Escherichia coli
O157:H7 str. Sakai]
gi|187767434|gb|EDU31278.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Escherichia coli O157:H7 str.
EC4196]
gi|188015296|gb|EDU53418.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Escherichia coli O157:H7 str.
EC4113]
gi|188999014|gb|EDU68000.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Escherichia coli O157:H7 str.
EC4076]
gi|189355354|gb|EDU73773.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Escherichia coli O157:H7 str.
EC4401]
gi|189359685|gb|EDU78104.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Escherichia coli O157:H7 str.
EC4486]
gi|189365785|gb|EDU84201.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Escherichia coli O157:H7 str.
EC4501]
gi|189371359|gb|EDU89775.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Escherichia coli O157:H7 str.
EC869]
gi|189376608|gb|EDU95024.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Escherichia coli O157:H7 str.
EC508]
gi|208726409|gb|EDZ76010.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Escherichia coli O157:H7 str.
EC4206]
gi|208733393|gb|EDZ82080.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Escherichia coli O157:H7 str.
EC4045]
gi|208740312|gb|EDZ87994.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Escherichia coli O157:H7 str.
EC4042]
gi|209160602|gb|ACI38035.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Escherichia coli O157:H7 str.
EC4115]
gi|209766430|gb|ACI81527.1| putative transport system permease protein [Escherichia coli]
gi|209766432|gb|ACI81528.1| putative transport system permease protein [Escherichia coli]
gi|209766436|gb|ACI81530.1| putative transport system permease protein [Escherichia coli]
gi|217319777|gb|EEC28202.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Escherichia coli O157:H7 str.
TW14588]
gi|254593424|gb|ACT72785.1| predicted transporter subunit: periplasmic-binding component of ABC
superfamily [Escherichia coli O157:H7 str. TW14359]
gi|320192253|gb|EFW66898.1| Osmoprotectant ABC transporter binding protein YehZ [Escherichia
coli O157:H7 str. EC1212]
gi|326339473|gb|EGD63284.1| Osmoprotectant ABC transporter binding protein YehZ [Escherichia
coli O157:H7 str. 1125]
gi|326343935|gb|EGD67696.1| Osmoprotectant ABC transporter binding protein YehZ [Escherichia
coli O157:H7 str. 1044]
Length = 305
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 41/312 (13%), Positives = 87/312 (27%), Gaps = 36/312 (11%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
K+ A L L A PV+ T+ A + +LE G T ++
Sbjct: 5 KVWAGSLVLLAAVSLPLHAAS---PVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQ 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L PV ++ + +DI+ Y F +
Sbjct: 61 LGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDAAWKNAQQGYEKVKKLDAEQNKLIW 120
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMIN 160
+ + +AV + + + K+ E +
Sbjct: 121 LTPAPANNTWTIAVRQDVAEKNKLTSLADLRRYLKEGGTFKLAASAEFIERADALPAFEK 180
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + + +++ + + L + +
Sbjct: 181 AYDFKLDQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAAQGLQTLSDPQGV- 239
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ VVR L + P +++ L+ + ++ I D + V L
Sbjct: 240 -QPIYAPAPVVRESVLKEYPQMAQWLQPVFASLDAKTLQQLNASIAVEGLDAKKVAADYL 298
Query: 278 RTHPDLLKNWLI 289
+ K W
Sbjct: 299 KQ-----KGWTK 305
>gi|193070498|ref|ZP_03051438.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Escherichia coli E110019]
gi|192956192|gb|EDV86655.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Escherichia coli E110019]
Length = 305
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 39/302 (12%), Positives = 85/302 (28%), Gaps = 31/302 (10%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
K+ A L + + A PV+ T+ A + +LE G T ++
Sbjct: 5 KLWAGSLVMLAAVSLPLQAAS---PVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQ 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L PV ++ + +DI+ Y F +
Sbjct: 61 LGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDAAWKNAQQGYEKVKKLDSEHNKLIW 120
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMIN 160
+ + +AV + + K+ E +
Sbjct: 121 LTPASANNTWTIAVRQDVAEKNKLTSLADLSRYLQEGGTFKLAASAEFIERADALPAFEK 180
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + + +++ + L + L + +
Sbjct: 181 AYGFKLGQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV- 239
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ VVR L + P +++ L+ + ++ I D V L
Sbjct: 240 -QPIYAPAPVVRESVLKEYPQMAQWLQPVFASLDAKTLQQLNASIAVEGLDANKVAADYL 298
Query: 278 RT 279
+
Sbjct: 299 KQ 300
>gi|307544956|ref|YP_003897435.1| hypothetical protein HELO_2366 [Halomonas elongata DSM 2581]
gi|307216980|emb|CBV42250.1| hypothetical protein YehZ precursor [Halomonas elongata DSM 2581]
Length = 309
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 41/291 (14%), Positives = 84/291 (28%), Gaps = 28/291 (9%)
Query: 13 TFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPVTFRS 70
++++ +PV A T+ + + LE G ++L + +
Sbjct: 14 GTLMAFSAAQADDSPVVVASKIDTEGSVLGQLILQRLESG-GIDVENRLQLGTTSIVREA 72
Query: 71 LKNKGIDIFMGYWYP------------------SLEKFIAPYLEEGSIKLVAENLQGAKY 112
L ID++ Y + + A E + + +
Sbjct: 73 LTAGEIDLYPEYTGNGAFFFDMADRPVWKDAEQAYQTVKAEDRERNGLVWLTPAEANNTW 132
Query: 113 MLAVNDVGF-ALGIKSYQDIAKYKKE-LGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
++V + S +D+A Y E K+ E Q + F L +
Sbjct: 133 AISVRGDVAREHDLASLEDLADYLDEGGDFKLAASAEFVESPQALPAFQEAYGFDLSEDQ 192
Query: 171 LIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV 229
L+ S + + +R + + +++ L++ + + V
Sbjct: 193 LLVLSGGNTAATMRAAAQQTSGVNAAMTYGTDGGLKALDLVVMDDTLGV--QPVYQPTPV 250
Query: 230 VRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
VR LD P I LL + + + D V L
Sbjct: 251 VRESVLDAHPEIETLLAPVFEALDRDTLQRLNGDVAVKGLDPAQVASDFLD 301
>gi|163790842|ref|ZP_02185267.1| glycine betaine/carnitine/choline ABC transporter, glycine
betaine/carnitine/choline-binding protein
[Carnobacterium sp. AT7]
gi|159873910|gb|EDP67989.1| glycine betaine/carnitine/choline ABC transporter, glycine
betaine/carnitine/choline-binding protein
[Carnobacterium sp. AT7]
Length = 314
Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats.
Identities = 27/289 (9%), Positives = 73/289 (25%), Gaps = 27/289 (9%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFR 69
++ S+ + + T+ + ++E + I + + +
Sbjct: 18 SSCSLPGLGGGFNEEGITITGGSTTEQQIVGYIVEGMVEHYIDIDAQIVNNLGSSSLNHQ 77
Query: 70 SLKNKGIDIFM---------------GYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
+L ++ P + G
Sbjct: 78 ALIGGDANVAAIKYTGTSLTGELGQAPITDPEKALDLVIDGFADRFDQKWFPTYGFANTY 137
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
A I+ +K G G++ + + L+ ++
Sbjct: 138 AFMVTKQLADEYDLVTISDLEKIAGELDAGVDTSWMEREG-----DGYDAFLETYKFDFN 192
Query: 175 -SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+ + N V L + ++ L + F V +
Sbjct: 193 RVYPMQIGLVYNALQANEMDVVLGYSTDGRIKSYDLVVLED--DKQLFPPYDASPVATFE 250
Query: 234 YLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
L+ P ++ +L ++ + E+ + NN + + V L+ +
Sbjct: 251 VLEAYPELNEVLLKLQNSITDEKMQELNFISDNNLIEPKVVADDFLKEN 299
>gi|261340565|ref|ZP_05968423.1| putative ABC transporter, periplasmic substrate-binding protein
[Enterobacter cancerogenus ATCC 35316]
gi|288316973|gb|EFC55911.1| putative ABC transporter, periplasmic substrate-binding protein
[Enterobacter cancerogenus ATCC 35316]
Length = 305
Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats.
Identities = 39/279 (13%), Positives = 80/279 (28%), Gaps = 28/279 (10%)
Query: 26 TPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGIDIFMGYW 83
V+ T+ A + +LE G KT ++L PV ++ + +DI+ Y
Sbjct: 25 ESVKVGSKIDTEGALLGNIILQVLESH-GVKTVNKVQLGTTPVVRGAIVSGELDIYPEYT 83
Query: 84 YPSLEKFIAPYLEEGS------------------IKLVAENLQGAKYMLAVNDVGFALGI 125
F + + + +AV G
Sbjct: 84 GNGAFFFKDENDAAWKNAKAGYEKVKKLDAEQNKLVWLTPAPANNTWTIAVRKDVAEKGK 143
Query: 126 KSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
+ + ++ K+ E + F L +L+ + + I
Sbjct: 144 LTSLEDLSRYLKEKGDIKLAASAEFIERPDALPAFEKAYDFKLDQSQLLSLAGGDTAVTI 203
Query: 184 RRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ + + +++ + L + L + + + VVR L P I
Sbjct: 204 KAAAQQTSGVNAAMAYGTDGPVAALGLQTLTDPKGV--QPIYAPAPVVREAVLKAYPQIG 261
Query: 243 RLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
LK + K ++ I D + V L+
Sbjct: 262 DWLKPVFEKLDEKTLQQLNANIAVEGLDAKKVAADFLKQ 300
>gi|323968050|gb|EGB63460.1| osmoprotectant transport system substrate-binding protein
[Escherichia coli M863]
gi|323977680|gb|EGB72766.1| osmoprotectant transport system substrate-binding protein
[Escherichia coli TW10509]
gi|327253258|gb|EGE64912.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Escherichia coli STEC_7v]
Length = 305
Score = 99 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 41/312 (13%), Positives = 88/312 (28%), Gaps = 36/312 (11%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
K+ A L L + A + V+ T+ A + +LE G T ++
Sbjct: 5 KLWAGSLVLLAAVSLPLQAASA---VKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQ 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L PV ++ + +DI+ Y F +
Sbjct: 61 LGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDAAWKNAGQGYEKVKKLDAEQNKLIW 120
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMIN 160
+ + +AV + + K+ E +
Sbjct: 121 LTPAPANNTWTIAVRQDVAEKNKLTSLADLSRYLKEGGTFKLAASAEFIERADALPAFEK 180
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + + +++ + L + L + +
Sbjct: 181 AYDFKLGQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV- 239
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ VVR L + P +++ L+ + ++ I D + V L
Sbjct: 240 -QPIYAPAPVVRESVLKEYPQMAQWLQPVFASLDAKTLQQLNASIAVEGLDAKKVAADYL 298
Query: 278 RTHPDLLKNWLI 289
+ K W
Sbjct: 299 KQ-----KGWTK 305
>gi|157156757|ref|YP_001463477.1| quaternary amine ABC transporter periplasmic substrate-binding
protein [Escherichia coli E24377A]
gi|157078787|gb|ABV18495.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Escherichia coli E24377A]
Length = 305
Score = 99 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 41/312 (13%), Positives = 88/312 (28%), Gaps = 36/312 (11%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
K+ A L + + A PV+ T+ A + +LE G T ++
Sbjct: 5 KVWAGSLVMLAAVSLPLQAAS---PVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQ 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L PV ++ + +DI+ Y F +
Sbjct: 61 LGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDAAWKNAQQGYEKVKKLDSEHNKLIW 120
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMIN 160
+ + +AV + + K+ E +
Sbjct: 121 LTPAPANNTWTIAVRQDVAEKNKLTSLADLSRYLQEGGTFKLAASAEFIERADALPAFEK 180
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + + +++ + L + L + +
Sbjct: 181 AYDFKLDQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV- 239
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ VVR L + P +++ L+ + ++ I D + V L
Sbjct: 240 -QPIYAPAPVVRESVLKEYPQMAQWLQPVFASLDAKTLQQLNASIAVEGLDAKKVAADYL 298
Query: 278 RTHPDLLKNWLI 289
+ K W
Sbjct: 299 KQ-----KGWTK 305
>gi|329938094|ref|ZP_08287545.1| permease binding-protein component [Streptomyces griseoaurantiacus
M045]
gi|329302583|gb|EGG46473.1| permease binding-protein component [Streptomyces griseoaurantiacus
M045]
Length = 295
Score = 99 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 25/281 (8%), Positives = 74/281 (26%), Gaps = 30/281 (10%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGIDIF 79
+ +T+ A+ + + G + + T +++N D
Sbjct: 15 PLDGAALTVTSKEFTEQLVLGAIMGIAFQAA-GAEVLDRTGIQGSVGTRAAVENGDADAT 73
Query: 80 MGYWYPSLEKFI----------------APYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
Y + ++ + + + Y LA+N +
Sbjct: 74 YEYTGTAWITYLGNSKPIPDPEQQWEAVRKADAKKGLTWLPPARLNNTYALAMNRSNYEK 133
Query: 124 G-IKSYQDIAKYKKELGAKIYGI--EPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
++ +A K + + + SL + +
Sbjct: 134 YRTRTLSQVAALSKSDPGAVTLCVEGEFANRADGLPGLEKAYGMSLPAGNITQMDTGI-- 191
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
I + + +++ + ++ + +VR+ L K P
Sbjct: 192 --IYTQTAKGACTYGEVYTTDGRITSMHLVVMEDDKKFF--PNYNAAPMVRTATLKKWPA 247
Query: 241 ISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
I+ +L + + + + + + +D V ++
Sbjct: 248 IASVLDPVTRALTNDVARALNAKVDVDGEDPHQVALDWMKE 288
>gi|290974323|ref|XP_002669895.1| adenylate cyclase [Naegleria gruberi]
gi|284083448|gb|EFC37151.1| adenylate cyclase [Naegleria gruberi]
Length = 1060
Score = 99 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 44/311 (14%), Positives = 93/311 (29%), Gaps = 34/311 (10%)
Query: 10 FLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFR 69
T I+ R D+ ++ W + ++LEE+LG I + V
Sbjct: 365 VATQCLINSPRKCDNSRKLQLIQFNWLGPTVNANVAKIVLEEMLGICAEIVTMNVTHALE 424
Query: 70 SLKN---KGIDIFMGYWYPSLEKFIAPY-LEEGSIKLVAENLQGAKYMLA---------- 115
+ + + +W S + Y + + +I V E AK
Sbjct: 425 EMAEYGTRRSYAMLEFWSESRKFQYDKYVVNDKTIMDVGELGINAKLGWYILGFMKDEYD 484
Query: 116 -VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK-GFRLIE 173
+++ K+ +A + G +I N K +L+ + E
Sbjct: 485 LIDEYREYRTEKAAHYLATNDTYPLGRFIGGAKSWITFD--QQIITNLKLNLQIQYTQEE 542
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE---------------I 218
+E S+I+ P +F W PH I L+I +
Sbjct: 543 NAEDFLISKIQEANDRKEPVLFYLWYPHQIFKKLSIKNVYLPPSSESCWTSYNQENQLID 602
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLR 278
+ + +V + ++ + + +++ I+ + LR
Sbjct: 603 CDYPTELLRKLVSPKLTEDM-VLNSFFSKFAYESTDQIDILADIVFQEMSVVDASCKWLR 661
Query: 279 THPDLLKNWLI 289
+ + W+
Sbjct: 662 NNTKRVAYWVS 672
>gi|300782370|ref|YP_003762661.1| glycine/betaine ABC transporter periplasmic protein [Amycolatopsis
mediterranei U32]
gi|299791884|gb|ADJ42259.1| periplasmic substrate-binding component of ABC-type glycine betaine
transport system [Amycolatopsis mediterranei U32]
Length = 306
Score = 99 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 34/279 (12%), Positives = 74/279 (26%), Gaps = 30/279 (10%)
Query: 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGI 76
A P+ A +TD + + LE GY + L + + + SLK+ +
Sbjct: 33 AAQGKGGAPIVVASFNFTDSQILAEIYAQALEAK-GYPVTRKLNLGSRELIYPSLKSGEL 91
Query: 77 DIFMGYWYPS---------------LEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
Y + + +A E I L+ K +
Sbjct: 92 QFIPEYQGAAITTGFGKEAGKTAQEEHEQLAKLFEPSGIGLLNFAAAEDKNTYIIKSDLA 151
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
+ K ++ P E + + L E
Sbjct: 152 KEKGIASISDLKKLDKVVM---AGPPECEKRLPCFKGF-TDVYKLTNITFQTIQEAGPRV 207
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD-YLDKCPN 240
+ ++ V P+ D L +V V ++ +
Sbjct: 208 E---QLKSGAVTVIPVDSVSPLTGDSKYTVLKDDLN--IVPTENVVPAVTKKVLDERGAD 262
Query: 241 ISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ + + K + + ++ K + ++ + V + L
Sbjct: 263 FANAVNAVSGKLTTDVMRDLNKRVDSDGERAADVAKDWL 301
>gi|300936555|ref|ZP_07151464.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 21-1]
gi|300458318|gb|EFK21811.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 21-1]
Length = 305
Score = 99 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 42/312 (13%), Positives = 87/312 (27%), Gaps = 36/312 (11%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
K+ A L L A PV+ T+ A + +LE G T ++
Sbjct: 5 KVWAGSLVLLAAVSLPLHAAS---PVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQ 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L PV ++ + +DI+ Y F +
Sbjct: 61 LGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDAAWKNAGQGYEKVKKLDAEQNKLIW 120
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMIN 160
+ + +AV + + K+ E +
Sbjct: 121 LTPAPANNTWTIAVRQDVAEKNKLTSLADLSRYLKEGGTFKLAASAEFIERADALPAFEK 180
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + + +++ + L + L + +
Sbjct: 181 AYGFKLGQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV- 239
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ VVR L + P +++ L+ + ++ I D + V L
Sbjct: 240 -QPIYAPAPVVRESVLKEYPQMAQWLQPVFASLDAKTLQQLNASIAVEGLDAKKVAADYL 298
Query: 278 RTHPDLLKNWLI 289
+ K W
Sbjct: 299 KQ-----KGWTK 305
>gi|291283379|ref|YP_003500197.1| Substrate-binding region of ABC-type glycine betaine transport
system precursor [Escherichia coli O55:H7 str. CB9615]
gi|209766428|gb|ACI81526.1| putative transport system permease protein [Escherichia coli]
gi|209766434|gb|ACI81529.1| putative transport system permease protein [Escherichia coli]
gi|226237486|dbj|BAH47008.1| predicted transporter subunit: periplasmic-binding component of ABC
superfamily [Escherichia coli O55:H7]
gi|290763252|gb|ADD57213.1| Substrate-binding region of ABC-type glycine betaine transport
system precursor [Escherichia coli O55:H7 str. CB9615]
gi|320641197|gb|EFX10675.1| Substrate-binding region of ABC-type glycine betaine transport
system precursor [Escherichia coli O157:H7 str. G5101]
gi|320646585|gb|EFX15496.1| Substrate-binding region of ABC-type glycine betaine transport
system precursor [Escherichia coli O157:H- str. 493-89]
gi|320651840|gb|EFX20215.1| Substrate-binding region of ABC-type glycine betaine transport
system precursor [Escherichia coli O157:H- str. H 2687]
gi|320657564|gb|EFX25362.1| Substrate-binding region of ABC-type glycine betaine transport
system precursor [Escherichia coli O55:H7 str. 3256-97
TW 07815]
gi|320663170|gb|EFX30479.1| Substrate-binding region of ABC-type glycine betaine transport
system precursor [Escherichia coli O55:H7 str. USDA
5905]
gi|320667921|gb|EFX34824.1| Substrate-binding region of ABC-type glycine betaine transport
system precursor [Escherichia coli O157:H7 str. LSU-61]
Length = 305
Score = 99 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 42/312 (13%), Positives = 88/312 (28%), Gaps = 36/312 (11%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
K+ A L L A PV+ T+ A + +LE G T ++
Sbjct: 5 KVWAGSLVLLAAVSLPLHAAS---PVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQ 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L PV ++ + +DI+ Y F +
Sbjct: 61 LGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDAAWKNAQQGYEKVKKLDAEQNKLIW 120
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMIN 160
+ + +AV + + + K+ E +
Sbjct: 121 LTPAPANNTWTIAVRQDVAEKNKLTSLADLRRYLKEGGTFKLAASAEFIERADALPAFEK 180
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + + +++ + L + L + +
Sbjct: 181 AYDFKLDQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV- 239
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ VVR L + P +++ L+ + ++ I D + V L
Sbjct: 240 -QPIYAPAPVVRESVLKEYPQMAQWLQPVFASLDAKTLQQLNASIAVEGLDAKKVAADYL 298
Query: 278 RTHPDLLKNWLI 289
+ K W
Sbjct: 299 KQ-----KGWTK 305
>gi|254516260|ref|ZP_05128320.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [gamma proteobacterium NOR5-3]
gi|219675982|gb|EED32348.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [gamma proteobacterium NOR5-3]
Length = 490
Score = 99 bits (247), Expect = 5e-19, Method: Composition-based stats.
Identities = 25/267 (9%), Positives = 70/267 (26%), Gaps = 29/267 (10%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGIDIFMGYWY 84
PV +++ + + LE G ++ +++ +L +DI+ Y
Sbjct: 24 PVVIGSKTFSESHVLGEIAAQYLEAH-GQSVERRMGLGGTLISYEALVQGELDIYPEYTG 82
Query: 85 PSLEKFIAP----------YLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKY 134
L + ++ Y +A+++ I+
Sbjct: 83 TLTGAVFNEPAMNAAGLTAALAKDGLEFYLRLGFDNSYAMAMSEDLARS--LGIAQISDL 140
Query: 135 KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAV 194
+ ++ ++ + + R V
Sbjct: 141 GEHPDLEVGLSHEFLNRGDGWPELQRRYGL-------PQQPSGIEHALAYRALDAGQLDV 193
Query: 195 FLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSV 252
++ + L +++ F ++R D + +LL +++
Sbjct: 194 ADAYTTDGDLDLYGLRLLDD--DLAFFPTYDAGYLIRQDLPSS---VRKLLSDLEGFIDE 248
Query: 253 ALENEMMKLILNNKQDRQFVGRTMLRT 279
+ + + N+ V LR
Sbjct: 249 PTMRALNRRVANDGLSPALVAFEFLRE 275
>gi|302531463|ref|ZP_07283805.1| predicted protein [Streptomyces sp. AA4]
gi|302440358|gb|EFL12174.1| predicted protein [Streptomyces sp. AA4]
Length = 324
Score = 99 bits (247), Expect = 5e-19, Method: Composition-based stats.
Identities = 36/281 (12%), Positives = 76/281 (27%), Gaps = 34/281 (12%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPVTFRSLKNKGIDIF 79
A + V +T+ M + L G + + ++L N D+
Sbjct: 46 ALNGVRVVVGSKDFTENIILGYMAEMALSAA-GADVIDLTDIKGSNSSRQALLNGQTDVT 104
Query: 80 MGYWYPSLEKFIAPYLE------------------EGSIKLVAENLQGAKYMLAVND-VG 120
Y + L + + + + +Y A +
Sbjct: 105 WEYTGTGWINYQGNELPVPGGEKAQYEATKKADAEKYGVTWLNYSPLNDQYAFATTEAYA 164
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEP--GNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+KS D+AK+ + + F E
Sbjct: 165 AKNNLKSTSDLAKFLTAHPDQNRFCLETEFTSRQDGFPAAVKAYGFK------NPKIENF 218
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
I N V + S LN+ L ++ + + +R+++L++
Sbjct: 219 GIGTIYSAVANGTCPVGEVFTTDGRISGLNLRVLEDDKKAF--PQYNAAATLRTEFLNQH 276
Query: 239 PNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
P I L+ + E+ K + + +D V +
Sbjct: 277 PEIRGPLETVAAALDNKQMVELCKKVDVDGKDAGTVAHDWM 317
>gi|184199682|ref|YP_001853889.1| putative ABC transporter substrate-binding protein [Kocuria
rhizophila DC2201]
gi|183579912|dbj|BAG28383.1| putative ABC transporter substrate-binding protein [Kocuria
rhizophila DC2201]
Length = 322
Score = 99 bits (247), Expect = 5e-19, Method: Composition-based stats.
Identities = 36/282 (12%), Positives = 75/282 (26%), Gaps = 31/282 (10%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL--AVPVTFRSLKNKGID 77
S V + + + + +L + G K K A ++K+ +D
Sbjct: 45 ASGGSSDSVTVGSADFPESQIVAELYAGVLRDA-GVKVETKPGIGAREAYVGAVKDGSVD 103
Query: 78 IFMGYWYP---------------SLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
+ Y + K + L+ + ++ + K L V
Sbjct: 104 VVPDYSGNLLLFADKNATAASAEDIVKALPDSLKNQDLSVLDASKAEDKDALVVTQATAE 163
Query: 123 LG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
+KS D++ K+L G E + F+ +
Sbjct: 164 KYGLKSATDLSSVCKDLVMA--GPPEFQERAYGTKGLKEKY---DCSFKSFQPINDGGGP 218
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNI 241
+ V + P D N+ L + V + D L +
Sbjct: 219 LTVQALTKGDAQVADIFTTTPAIQDENLVVLDDPKNNFI--AQQVLPLTAPDRLPQ--KA 274
Query: 242 SRLLKNI--KFSVALENEMMKLILN-NKQDRQFVGRTMLRTH 280
L K + ++ + + +Q+ + L H
Sbjct: 275 VDALNQFSTKLTTQDLIDLNREVSGGEQQNPGDAAKQWLADH 316
>gi|333002044|gb|EGK21610.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Shigella flexneri K-218]
Length = 305
Score = 99.5 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 39/302 (12%), Positives = 86/302 (28%), Gaps = 31/302 (10%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
K+ A L + + A PV+ T+ A + +LE G T ++
Sbjct: 5 KLWAGSLVMLAAVSLPLQAAS---PVKVGSKIDTEGALLGNIIFQVLESH-GVPTVNKVQ 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L PV ++ + +DI+ Y F +
Sbjct: 61 LGTTPVGRGAITSGELDIYPEYTGNGAFFFKDENDAAWKNAGQGYEKVKKLDAEHNKLIW 120
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMIN 160
+ + +AV + + K+ E +
Sbjct: 121 LTPAPANNTWTIAVRQDVAEKNKLTSLADLSRYLQEGGTFKLAASAEFIERADALPTFEK 180
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + + +++ + L + L + +
Sbjct: 181 AYGFKLGQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV- 239
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ VVR L + P +++ L+ + ++ I D + V L
Sbjct: 240 -QPIYAPAPVVRESVLKEYPQMAQWLQPVFASLDAKTLQQLNASIAVEGLDAKKVAADYL 298
Query: 278 RT 279
+
Sbjct: 299 KQ 300
>gi|115359281|ref|YP_776419.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia ambifaria AMMD]
gi|115284569|gb|ABI90085.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia ambifaria AMMD]
Length = 306
Score = 99.5 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 43/303 (14%), Positives = 89/303 (29%), Gaps = 28/303 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--N 58
M L + + + A A + TPV + T+ + + +L+ G
Sbjct: 1 MKLALPARILGLALAAAVAPGARADTPVVVSSKIDTEGNLLGNVIAQVLKAH-GIPVTEK 59
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------I 100
I L P+ ++L + IDI+ Y + F +
Sbjct: 60 IALGTTPIVRKALTSGEIDIYPEYTGNAAFFFNKADDPAWKNASQGYDTAKKLDYAANHL 119
Query: 101 KLVAENLQGAKYMLAVNDVGFA-LGIKSYQDIAKYK-KELGAKIYGIEPGNEGNQRILDM 158
+ + +AV +K+ D K+ K+ +
Sbjct: 120 VWLTPAPANNTWGVAVLAPVAQSQHLKTLSDFGKWTVGGGKVKLAASAEFVNSPSALPSF 179
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEE 217
F LK +L+ S + + I+ + + + + + L +
Sbjct: 180 EKAYGFKLKPDQLVVLSGGDTAATIKAAANQTDGVNAAMVYGTDGGIASSGLVVLDD--D 237
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
+ V+R L P I+ LK + + + I N + V ++
Sbjct: 238 KHVQPVYAPAPVIREAALKAHPQIADYLKPVFSSLDLKTLQALNARIQINGEPAAGVAKS 297
Query: 276 MLR 278
L+
Sbjct: 298 YLK 300
>gi|292492596|ref|YP_003528035.1| glycine/betaine ABC transporter substrate-binding protein
[Nitrosococcus halophilus Nc4]
gi|291581191|gb|ADE15648.1| Substrate-binding region of ABC-type glycine betaine transport
system [Nitrosococcus halophilus Nc4]
Length = 501
Score = 99.5 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 35/305 (11%), Positives = 74/305 (24%), Gaps = 35/305 (11%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIK 60
LA+ L++ A PV +T+ + + ++ + +
Sbjct: 8 KTALALTLWMMFSGCFAAS------PVMVGSKKFTESVILGELATQLVRSVGTKAVHRRE 61
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEE----------GSIKLVAENLQGA 110
L V + +L IDI+ Y + +A + I++
Sbjct: 62 LGGSRVLWNALLAGEIDIYPEYTGTLYHEILAQQVTAESELRRFLATQGIEMSRPLGFNN 121
Query: 111 KYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
Y L + + S EL + + +
Sbjct: 122 SYALGMKEEVAQKLNISKISDLLQHPELVLGFSN--EFMARADGWPGLRAHYGLPQRQV- 178
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
R V + + L + F + +
Sbjct: 179 -----SGLDHDLAYRGLEQGSVQVMDLYSTDAEIQYYGLRVLED--DRHYFPDYKALFLY 231
Query: 231 RSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT---HP---D 282
R++ L + P L+++ + A M + V L +P
Sbjct: 232 RNELLKRAPEAVAALQSLEGQLDSAAMVAMNAQAKLERIPDSQVAGHFLEQTLGYPPQTA 291
Query: 283 LLKNW 287
+ W
Sbjct: 292 SVTAW 296
>gi|323936745|gb|EGB33030.1| ABC transporter [Escherichia coli E1520]
Length = 305
Score = 99.5 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 36/299 (12%), Positives = 83/299 (27%), Gaps = 33/299 (11%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLA 63
++ L +A V+ T+ A + +LE G T ++L
Sbjct: 10 SLVLLAAVSLPLHAASP-----VKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQLGT 63
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKLVAE 105
PV ++ + +DI+ Y F + +
Sbjct: 64 TPVVRGAITSGELDIYPEYTGNGAFFFKDENDAAWKNAGQGYEKVKKLDAEQNKLIWLTP 123
Query: 106 NLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMINNNK 163
+ +AV + + K+ E +
Sbjct: 124 APANNTWTIAVRQDVAEKNKLTSLADLSRYLKEGGTFKLAASAEFIERADALPAFEKAYG 183
Query: 164 FSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
F L +L+ + + I+ + + +++ + L + L + +
Sbjct: 184 FKLGQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV--QP 241
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+ VVR L + P +++ L+ + ++ I D + V L+
Sbjct: 242 IYAPAPVVRESVLKEYPQMAQWLQPVFASLDAKTLQQLNASIAVEGLDAKKVAADYLKQ 300
>gi|157144934|ref|YP_001452253.1| hypothetical protein CKO_00663 [Citrobacter koseri ATCC BAA-895]
gi|157082139|gb|ABV11817.1| hypothetical protein CKO_00663 [Citrobacter koseri ATCC BAA-895]
Length = 305
Score = 99.5 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 43/292 (14%), Positives = 89/292 (30%), Gaps = 33/292 (11%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGIDIFM 80
+ +PV T+ A + +LE G KT ++L PV ++ + +DI+
Sbjct: 22 QAASPVTVGSKIDTEGALLGNLILQVLESH-GVKTVNKVQLGTTPVVRGAITSGELDIYP 80
Query: 81 GYWYPSLEKFIAPYLEEGS------------------IKLVAENLQGAKYMLAVNDVGFA 122
Y F + + + +AV
Sbjct: 81 EYTGNGAFFFKDENDPAWKNAQAGFEKVKKLDAEQNKLVWLTPAPANNTWTIAVRQDVAE 140
Query: 123 LG-IKSYQDIAKYKKEL-GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ S D+ +Y KE K+ E + F L +L+ + +
Sbjct: 141 KNKLVSLADLGRYLKEGGTFKLAASAEFIERADALPAFEKAYDFKLNQNQLLSLAGGDTA 200
Query: 181 SQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
I+ + + +++ + L + L + + + VVR L + P
Sbjct: 201 VTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV--QPIYAPAPVVRESVLKEYP 258
Query: 240 NISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
++ L+ + ++ I D + V L+ K W+
Sbjct: 259 QMAEWLQPVFASLDEKTLQQLNASIAVEGLDAKKVAADYLKQ-----KGWVK 305
>gi|301644148|ref|ZP_07244156.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 146-1]
gi|301077446|gb|EFK92252.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 146-1]
gi|315615369|gb|EFU96001.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Escherichia coli 3431]
Length = 305
Score = 99.5 bits (246), Expect = 6e-19, Method: Composition-based stats.
Identities = 40/302 (13%), Positives = 85/302 (28%), Gaps = 31/302 (10%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
K+ A L L A PV+ T+ A + +LE G T ++
Sbjct: 5 KVWAGSLVLLAAVSLPLHAAS---PVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQ 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L PV ++ + +DI+ Y F +
Sbjct: 61 LGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDAAWKNAQQGYEKVKKLDAEQNKLIW 120
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMIN 160
+ + +AV + + K+ E +
Sbjct: 121 LTPAPANNTWTIAVRQDVAEKNKLTSLADLSRYLKEGGTFKLAASAEFIERADALPAFEK 180
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + + +++ + L + L + +
Sbjct: 181 AYGFKLGQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV- 239
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ VVR L + P +++ L+ + ++ I D + V L
Sbjct: 240 -QPIYAPAPVVRESVLKEYPQMAQWLQPVFASLDAKTLQQLNASIAVEGLDAKKVAADYL 298
Query: 278 RT 279
+
Sbjct: 299 KQ 300
>gi|83716279|ref|YP_439356.1| ABC transporter periplasmic substrate-binding protein [Burkholderia
thailandensis E264]
gi|167615899|ref|ZP_02384534.1| ABC transporter, periplasmic substrate-binding protein, putative
[Burkholderia thailandensis Bt4]
gi|257142476|ref|ZP_05590738.1| ABC transporter, periplasmic substrate-binding protein, putative
[Burkholderia thailandensis E264]
gi|83650104|gb|ABC34168.1| ABC transporter, periplasmic substrate-binding protein, putative
[Burkholderia thailandensis E264]
Length = 268
Score = 99.5 bits (246), Expect = 6e-19, Method: Composition-based stats.
Identities = 43/253 (16%), Positives = 73/253 (28%), Gaps = 7/253 (2%)
Query: 28 VRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSL 87
V A + A + S L G + + F L++ D+ W P
Sbjct: 8 VTLATIDLSFHHAAAGIVSATL-ARHGVRVDEIRRPHEAAFELLRDGTADMLCAAWLPGS 66
Query: 88 EKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDI--AKYKKELGAKIYGI 145
+ + L A V D A + S D+ A + I GI
Sbjct: 67 HGAYFDAIADAFDPLAEMYAPYAL--WGVPDYVPADAVSSVADLTRADVVVRMTPLIQGI 124
Query: 146 EPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINS 205
PG ++ ++ G+R + A R V W+P ++
Sbjct: 125 GPGAGISRFSREIFAAYALDAHGYRFANGTLEACVDAFERAIARRAWIVVPLWQPQYLHW 184
Query: 206 DLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP-NISRLLKNIKFSVALENEMMKLILN 264
I L + +A V+R ++ P L+ ++ A + LI
Sbjct: 185 RHTIRELREPRGLLRGTDA-ATLVLRKSTRERLPAEAVDALRRLRPGNAGITRLDHLIAR 243
Query: 265 NKQDRQFVGRTML 277
G L
Sbjct: 244 EGLSPLEAGERYL 256
>gi|239814741|ref|YP_002943651.1| substrate-binding region of ABC-type glycine betaine transport
system [Variovorax paradoxus S110]
gi|239801318|gb|ACS18385.1| Substrate-binding region of ABC-type glycine betaine transport
system [Variovorax paradoxus S110]
Length = 509
Score = 99.1 bits (245), Expect = 6e-19, Method: Composition-based stats.
Identities = 27/291 (9%), Positives = 62/291 (21%), Gaps = 23/291 (7%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK--TN 58
M + + L + + + +R +T+ + +
Sbjct: 1 MLRAALLFLAMAWLGAAASAQPGE-GTLRVGSKRFTESYILAELLAQTAAPHTASPPVVR 59
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA---------ENLQG 109
L + + +L++ ID++ Y + + E + A G
Sbjct: 60 QGLGNTAIVYEALRSGAIDLYAEYTGTIALEILKGSPAETREAMNAALAPMGLGVAIPLG 119
Query: 110 AKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
A+ + ++ K K+ + F+
Sbjct: 120 FNDGYALAVRAADAERLGLRTLSDLAKHPELKLGLSNEFLGRADGWKGLAARYGFTQAPT 179
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV 229
L + L + L + +
Sbjct: 180 GLDHG-------LAYEAVAAKQIDAIDIYTTDAKIEHLGLRVLEDDRKYF--PRYDAVVL 230
Query: 230 VRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
R D + P LK + + M + R L
Sbjct: 231 YRLDLPTRLPQAWAALKTLEGRIDEHAMIAMNARAELQSVPFDTIARDFLA 281
>gi|82777387|ref|YP_403736.1| putative transport system permease protein [Shigella dysenteriae
Sd197]
gi|309788009|ref|ZP_07682618.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Shigella dysenteriae 1617]
gi|81241535|gb|ABB62245.1| putative transport system permease protein [Shigella dysenteriae
Sd197]
gi|308924143|gb|EFP69641.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Shigella dysenteriae 1617]
Length = 305
Score = 99.1 bits (245), Expect = 7e-19, Method: Composition-based stats.
Identities = 40/312 (12%), Positives = 88/312 (28%), Gaps = 36/312 (11%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
K+ A L + + A PV+ T+ A + +LE G T ++
Sbjct: 5 KVWAGSLVMLAAVSLPLQAAS---PVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQ 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L PV ++ + ++I+ Y F +
Sbjct: 61 LGTTPVVRGAITSGELNIYPEYTGNGAFFFKDENDAAWKNAQQGYEKVKKLDAEQNKLIW 120
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMIN 160
+ + +AV + + K+ E +
Sbjct: 121 LTPAPANNTWTIAVRQDVAEKNKLTSLADLSRYLKEGGTFKLAASAEFIERADALPAFEK 180
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + + +++ + L + L + +
Sbjct: 181 AYDFKLDQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV- 239
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ VVR L + P +++ L+ + ++ I D + V L
Sbjct: 240 -QPIYAPAPVVRESVLKEYPQMAQWLQPVFASLDAKTLQQLNASIAVEGLDAKKVAADYL 298
Query: 278 RTHPDLLKNWLI 289
+ K W
Sbjct: 299 KQ-----KGWTK 305
>gi|119508973|ref|ZP_01628125.1| Binding-protein-dependent transport systems inner membrane
component [Nodularia spumigena CCY9414]
gi|119466502|gb|EAW47387.1| Binding-protein-dependent transport systems inner membrane
component [Nodularia spumigena CCY9414]
Length = 524
Score = 99.1 bits (245), Expect = 7e-19, Method: Composition-based stats.
Identities = 20/133 (15%), Positives = 40/133 (30%), Gaps = 4/133 (3%)
Query: 149 NEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLN 208
++ + + + L + + + V + +
Sbjct: 238 AGFTSEFMERADGYPGLREHYDLQFNTLELDPGLMYEAIKEKQVDVISGFSTDGRIKAYD 297
Query: 209 IHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNK 266
+ L + + F +VR + L K P I L + K S + E+ L+ K
Sbjct: 298 LEVLED--DKNYFPPYYAAPLVRGETLRKYPEIGTALDKLTGKISDEIMAELNYLVDEKK 355
Query: 267 QDRQFVGRTMLRT 279
Q V R L+
Sbjct: 356 QPPSQVAREFLQK 368
Score = 54.8 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 40/131 (30%), Gaps = 8/131 (6%)
Query: 14 FSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL--AVPVTFRSL 71
+ + +T+ M +VI+E ++K + F +L
Sbjct: 369 LGFKTSTQRSGAADIIVGSKNFTEQYLLAEMLAVIIENYTNLDVDLKTGLAGTQIAFNAL 428
Query: 72 KNKGIDIFMGYWYPSLEKFIA------PYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
ID++ Y L I + + ++ + +K V+ +
Sbjct: 429 IKGDIDLYPEYTGTGLLTIIQVDEETRDEIIQSKDQVFNYVKEESKKRYDVDWLTSFGFN 488
Query: 126 KSYQDIAKYKK 136
+Y + + +
Sbjct: 489 NTYGLMMRRED 499
>gi|170019551|ref|YP_001724505.1| substrate-binding region of ABC-type glycine betaine transport
system [Escherichia coli ATCC 8739]
gi|256022184|ref|ZP_05436049.1| substrate-binding region of ABC-type glycine betaine transport
system [Escherichia sp. 4_1_40B]
gi|312973619|ref|ZP_07787791.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Escherichia coli 1827-70]
gi|169754479|gb|ACA77178.1| Substrate-binding region of ABC-type glycine betaine transport
system [Escherichia coli ATCC 8739]
gi|310332214|gb|EFP99449.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Escherichia coli 1827-70]
Length = 305
Score = 99.1 bits (245), Expect = 7e-19, Method: Composition-based stats.
Identities = 42/312 (13%), Positives = 87/312 (27%), Gaps = 36/312 (11%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
K+ A L L A PV+ T+ A + +LE G T ++
Sbjct: 5 KVWAGSLVLLAAVSLPLHAAS---PVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQ 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L PV ++ + +DI+ Y F +
Sbjct: 61 LGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDAAWKNAQQGYEKVKKLDAEQNKLIW 120
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMIN 160
+ + +AV + + K+ E +
Sbjct: 121 LTPAPANNTWTIAVRQDVAEKNKLTSLADLSRYLKEGGTFKLAASAEFIERADALPAFEK 180
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + + +++ + L + L + +
Sbjct: 181 AYDFKLDQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV- 239
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ VVR L + P +++ L+ + ++ I D + V L
Sbjct: 240 -QPIYAPAPVVRESVLKEYPQMAQWLQPVFASLDAKTLQQLNASIAVEGLDAKKVAADYL 298
Query: 278 RTHPDLLKNWLI 289
+ K W
Sbjct: 299 KQ-----KGWTK 305
>gi|1850605|gb|AAB48048.1|AAB48048 ProX [Streptococcus mutans]
Length = 137
Score = 99.1 bits (245), Expect = 8e-19, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 58/138 (42%), Gaps = 3/138 (2%)
Query: 152 NQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHY 211
+ + + +L ++L+ AS A + + + +N V +W PH + + + Y
Sbjct: 1 MKAANKALKSYS-NLSDWKLVSASTGAMTTALDQAYKNKKDIVVAAWSPHWMFAKYKLKY 59
Query: 212 LPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQF 271
L ++ G E+ ++++ R P ++++ ++ +M I NN +
Sbjct: 60 LKDSKKDFGSIES-IHSITRKGLKKDIPKANKIIDKFNWTQKDMEAVMLDI-NNGMSPEK 117
Query: 272 VGRTMLRTHPDLLKNWLI 289
+ ++ HP + +W
Sbjct: 118 AAKKWIKEHPKKVASWTS 135
>gi|157161613|ref|YP_001458931.1| quaternary amine ABC transporter periplasmic substrate-binding
protein [Escherichia coli HS]
gi|300948230|ref|ZP_07162351.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 116-1]
gi|157067293|gb|ABV06548.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Escherichia coli HS]
gi|300452236|gb|EFK15856.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 116-1]
Length = 305
Score = 99.1 bits (245), Expect = 8e-19, Method: Composition-based stats.
Identities = 41/312 (13%), Positives = 88/312 (28%), Gaps = 36/312 (11%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
K+ A L + + A PV+ T+ A + +LE G T ++
Sbjct: 5 KLWAGSLVMLAAVSLPLQAAS---PVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQ 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L PV ++ + +DI+ Y F +
Sbjct: 61 LGTTPVVRGAITSDELDIYPEYTGNGAFFFKDENDAAWKNAQQGYEKVKKLDSEHNKLIW 120
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMIN 160
+ + +AV + + K+ E +
Sbjct: 121 LTPAPANNTWTIAVRQDVAEKNKLTSLADLSRYLQEGGTFKLAASAEFIERADALPAFEK 180
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + + +++ + L + L + +
Sbjct: 181 AYGFKLGQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV- 239
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ VVR L + P +++ L+ + ++ I D + V L
Sbjct: 240 -QPIYAPAPVVRESVLREYPQMAQWLQPVFASLDAKTLQQLNASIAVEGLDAKKVAADYL 298
Query: 278 RTHPDLLKNWLI 289
+ K W
Sbjct: 299 KQ-----KGWTK 305
>gi|327393961|dbj|BAK11383.1| glycine betaine/carnitine/choline-binding protein precursor OpuCC
[Pantoea ananatis AJ13355]
Length = 180
Score = 99.1 bits (245), Expect = 8e-19, Method: Composition-based stats.
Identities = 23/180 (12%), Positives = 50/180 (27%), Gaps = 16/180 (8%)
Query: 109 GAKYMLAVNDVGFALGIKS--------YQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN 160
Y A+ S + K + ++ + + +
Sbjct: 2 NNTYAFAMQRARAEKEGISTLSQLVAKMDQVRKTDPKHNWRLGLDLEFYGRSDGMKPLQK 61
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISG 220
+L ++ + + R+ L + ++ L +
Sbjct: 62 TYNLTLDRPQIRQMDPG----LVYNAVRDGFVDAGLIYTTDGRVKGFDLKVLED--DKHF 115
Query: 221 FGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLR 278
F +V VVR D L P + L + + E+ K + + Q + V R L+
Sbjct: 116 FPSYNVTPVVRQDVLASHPGLEAALNQLSPLITDEAITELNKRVDIDHQSPEQVARDFLQ 175
>gi|153007644|ref|YP_001368859.1| glycine betaine ABC transporter substrate-binding protein
[Ochrobactrum anthropi ATCC 49188]
gi|151559532|gb|ABS13030.1| Substrate-binding region of ABC-type glycine betaine transport
system [Ochrobactrum anthropi ATCC 49188]
Length = 309
Score = 98.8 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 46/300 (15%), Positives = 90/300 (30%), Gaps = 28/300 (9%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLA 63
+ L F+ + + + V + T+ + IL G +T I+L A
Sbjct: 9 GSAIALALFAGAVQFSSLAQAQVVVSSKIDTEGGVLGNIILAILNAN-GIQTTDRIQLGA 67
Query: 64 VPVTFRSLKNKGIDIFMGYWYPS------------------LEKFIAPYLEEGSIKLVAE 105
PV +++ IDI+ Y + + I +A
Sbjct: 68 TPVVRKAIIAGEIDIYPEYTGNAAFFFNKADDPLWKDPAKAYGTAKQLDYDANKIVWLAP 127
Query: 106 NLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN-NNK 163
+ + +AV + + + KY G I + L
Sbjct: 128 SPANNTWGIAVRKDVADENKLTNLSEFGKYISGGGKVILAASSEFVNSAAALPAFQTAYS 187
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIP-AVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
F+LK +LI S + + I + + + + L +
Sbjct: 188 FTLKPDQLITLSGGDTAATIAAAANQTSGANAAMVYGTDGGIAPSGLVVLED--DKHVQP 245
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
++R + L K P I LLK + K + E+ + + + V L+ +
Sbjct: 246 VYQPAPIIREEVLKKNPKIEELLKPVFEKLDLTTLQELNGRVQLGGEPAKAVAEDFLKAN 305
>gi|324998122|ref|ZP_08119234.1| ABC transporter substrate-binding protein [Pseudonocardia sp. P1]
Length = 301
Score = 98.8 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 35/303 (11%), Positives = 83/303 (27%), Gaps = 36/303 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSC-----TPVRFADTGWTDIAATTAMTSVILEEILGY 55
M K++ + D + V +T+ + ++ L + G
Sbjct: 1 MKKLVTLLAVAVFVLTGCGGDPLAGSDTAPDVVAIGSGNFTESQLLAEVYALALRDA-GV 59
Query: 56 KTN--IKLLAVPVTFRSLKNKGIDIFMGYWY--------------PSLEKFIAPYLEEGS 99
+ + + + F +L++ +D+ Y P +
Sbjct: 60 QVEDPVAIGSREAYFPALQDGSVDLIPDYSGALMTYLDEEATAVEPDEVYAELGRVLPPG 119
Query: 100 IKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ L + K + V L +++ D+A + ++ G I +
Sbjct: 120 LVLGRMSEAENKDAVVVTRETATRLNLRTVADLAPHCPQM--TFGGGPEFRTRPDGIPGL 177
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
N + +R +++ + + + + P + L +E
Sbjct: 178 AKNYGCAFGQYRSLDSGGPLTVA----ALEGDDVQAANLFTTDPALPQNDFVPLADPKEN 233
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDR-QFVGRT 275
+V VV P + +L I S M ++ + V
Sbjct: 234 F--AAQNVVPVVAER--KASPQVRAVLDRISAALSTEELLAMNTEAAGPEKPALRTVAAD 289
Query: 276 MLR 278
L
Sbjct: 290 WLE 292
>gi|163842490|ref|YP_001626894.1| substrate-binding region of ABC-type glycine betaine transport
system [Brucella suis ATCC 23445]
gi|225626756|ref|ZP_03784795.1| substrate-binding region of ABC-type glycine betaine transport
system [Brucella ceti str. Cudo]
gi|225851752|ref|YP_002731985.1| glycine betaine ABC transporter substrate-binding protein [Brucella
melitensis ATCC 23457]
gi|237814686|ref|ZP_04593684.1| substrate-binding region of ABC-type glycine betaine transport
system [Brucella abortus str. 2308 A]
gi|297247611|ref|ZP_06931329.1| osmoprotectant transport system substrate-binding protein [Brucella
abortus bv. 5 str. B3196]
gi|163673213|gb|ABY37324.1| Substrate-binding region of ABC-type glycine betaine transport
system [Brucella suis ATCC 23445]
gi|225618413|gb|EEH15456.1| substrate-binding region of ABC-type glycine betaine transport
system [Brucella ceti str. Cudo]
gi|225640117|gb|ACO00031.1| Substrate-binding region of ABC-type glycine betaine transport
system [Brucella melitensis ATCC 23457]
gi|237789523|gb|EEP63733.1| substrate-binding region of ABC-type glycine betaine transport
system [Brucella abortus str. 2308 A]
gi|297174780|gb|EFH34127.1| osmoprotectant transport system substrate-binding protein [Brucella
abortus bv. 5 str. B3196]
Length = 355
Score = 98.8 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 50/301 (16%), Positives = 92/301 (30%), Gaps = 32/301 (10%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLL 62
A+ LF+ S +A V + T+ + +L G KT I+L
Sbjct: 58 FALALFVGAIQFSSLAEAQ----VAVSSKIDTEGGVLGNIILTVLNAN-GIKTTDRIQLG 112
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPS------------------LEKFIAPYLEEGSIKLVA 104
A PV +++ IDI+ Y + E + I +
Sbjct: 113 ATPVVRKAITAGEIDIYPEYTGNAAFFFNKADDPLWKDPAKAYETAKKLDYDANKIVWLT 172
Query: 105 ENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN-NN 162
+ + +AV + S D KY G + + L
Sbjct: 173 PSPANNTWGIAVRKDVANENKLASLSDFGKYIAGGGKVVLAASSEFVNSAAALPAFQTAY 232
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
F+LK +LI S + + I N + + + + L +
Sbjct: 233 GFTLKPDQLITLSGGDTAATIAAAANQTNGANAAMVYGTDGGIAPSGLVVLED--DKHVQ 290
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++R + L K P I LLK + K + ++ + + + V L+
Sbjct: 291 PVYQPAPIIREEVLKKDPKIEELLKPVFEKLDLTTLQDLNGRVQLGGEPAKAVAEDFLKK 350
Query: 280 H 280
+
Sbjct: 351 N 351
>gi|194431527|ref|ZP_03063819.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Shigella dysenteriae 1012]
gi|194420352|gb|EDX36429.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Shigella dysenteriae 1012]
gi|320178922|gb|EFW53885.1| Osmoprotectant ABC transporter binding protein YehZ [Shigella
boydii ATCC 9905]
gi|332092640|gb|EGI97711.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Shigella dysenteriae 155-74]
Length = 305
Score = 98.8 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 41/312 (13%), Positives = 86/312 (27%), Gaps = 36/312 (11%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
K+ L L A PV+ T+ A + +LE G T ++
Sbjct: 5 KVWVGSLVLLAAVSLPLHAAS---PVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQ 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L PV ++ + +DI+ Y F +
Sbjct: 61 LGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDAAWKNAGQGYEKVKKLDAEQNKLIW 120
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMIN 160
+ + +AV + + K+ E +
Sbjct: 121 LTPAPANNTWTIAVRQDVAEKNKLTSLADLSRYLKEGGTFKLAASAEFIERADALPAFEK 180
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + + +++ + L + L + +
Sbjct: 181 AYDFKLDQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV- 239
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ VVR L + P +++ L+ + ++ I D + V L
Sbjct: 240 -QPIYAPAPVVRESVLKEYPQMAQWLQPVFASLDAKTLQQLNASIAVEGLDAKKVAADYL 298
Query: 278 RTHPDLLKNWLI 289
+ K W
Sbjct: 299 KQ-----KGWTK 305
>gi|296156916|ref|ZP_06839753.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia sp. Ch1-1]
gi|295892802|gb|EFG72583.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia sp. Ch1-1]
Length = 341
Score = 98.8 bits (244), Expect = 9e-19, Method: Composition-based stats.
Identities = 36/337 (10%), Positives = 85/337 (25%), Gaps = 50/337 (14%)
Query: 1 MYKILAVCLFLTTFSISYA------RDADSCTPVRFADTG-WTDIAATTAMTSVILEEIL 53
M + A ++ V +A + T + ++ L
Sbjct: 1 MKTLAACGAVALAVMMATGVPAFAQSMPGKGKTVNYAQGDSFGGNYVATQIVMQAMK-NL 59
Query: 54 GYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
GY + + + F++ D+ +P E ++ + + G
Sbjct: 60 GYGVKLTTMNTTLFFQAAAQGDEDLATDVNFPQRELAFRAVQKDAQVVGSGMIIGGGING 119
Query: 114 LAVNDVGFALGIKSYQDIAKYKK-------ELGAKIYGIEPGNEGNQRILDMINNNKFSL 166
++ + K K + A++ +PG + + +
Sbjct: 120 YLIDKKTADAYKITNLAQLKDPKLAALFGSDGKAQLISCDPGWSCGDVVDYQLEHFGL-Q 178
Query: 167 KGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP----INSDLNIHYLPGGEEI---- 218
+ A + PA F +W P + ++ +LP E
Sbjct: 179 NTVHSVRGKYEALMVDTIARVKQGKPAFFYAWSPSWTVNALVPGKDVVWLPTPEAALPPN 238
Query: 219 -----------------------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE 255
+ V ++ P + L++ +KF +
Sbjct: 239 VPNTGSSLVNGVQGCAGNADPCRMAMASWNWGAVANRAFIAANPAVRSLIEQMKFPSSTW 298
Query: 256 NEMMKLILNNKQDRQFV---GRTMLRTHPDLLKNWLI 289
+ I N + V + + W+
Sbjct: 299 SSWEYAISRNGGSQALVTKLATDWMTQNKAQFDQWVS 335
>gi|161618206|ref|YP_001592093.1| substrate-binding region of ABC-type glycine betaine transport
system [Brucella canis ATCC 23365]
gi|161335017|gb|ABX61322.1| Substrate-binding region of ABC-type glycine betaine transport
system [Brucella canis ATCC 23365]
Length = 355
Score = 98.8 bits (244), Expect = 9e-19, Method: Composition-based stats.
Identities = 50/301 (16%), Positives = 92/301 (30%), Gaps = 32/301 (10%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLL 62
A+ LF+ S +A V + T+ + +L G KT I+L
Sbjct: 58 FALALFVGAIQFSSLAEAQ----VAVSSKIDTEGGVLGNIILTVLNAN-GIKTTDRIQLG 112
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPS------------------LEKFIAPYLEEGSIKLVA 104
A PV +++ IDI+ Y + E + I +
Sbjct: 113 ATPVVRKAITAGEIDIYPEYTGNAAFFFNKADDPLWKDPAKAYETAKKLDYDANKIVWLT 172
Query: 105 ENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN-NN 162
+ + +AV + S D KY G + + L
Sbjct: 173 PSPANNTWGIAVRKDVANENKLASLSDFGKYIAGGGKVVLAASSEFVNSAAALPAFQTAY 232
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
F+LK +LI S + + I N + + + + L +
Sbjct: 233 GFTLKPDQLITLSGGDTAATIAAAANQTNGANAAMVYGTDGGIAPSGLVVLED--DKHVQ 290
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++R + L K P I LLK + K + ++ + + + V L+
Sbjct: 291 PVYQPAPIIREEVLKKDPKIEELLKPVFEKLDLTTLQDLNGRVQLGGEPAKAVAEDFLKK 350
Query: 280 H 280
+
Sbjct: 351 N 351
>gi|148559743|ref|YP_001258251.1| putative ABC transporter periplasmic substrate-binding protein
[Brucella ovis ATCC 25840]
gi|148371000|gb|ABQ60979.1| putative ABC transporter, periplasmic substrate-binding protein
[Brucella ovis ATCC 25840]
Length = 355
Score = 98.8 bits (244), Expect = 9e-19, Method: Composition-based stats.
Identities = 50/301 (16%), Positives = 93/301 (30%), Gaps = 32/301 (10%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLL 62
A+ LF+ S +A V + T+ + +L G KT I+L
Sbjct: 58 FALALFVGAIQFSSLAEAQ----VAVSSKIDTEGGVLGNIILTVLNAN-GIKTTDRIQLG 112
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPS------------------LEKFIAPYLEEGSIKLVA 104
A PV +++ IDI+ Y + E + I +
Sbjct: 113 ATPVVRKAITAGEIDIYPEYTGNAAFFFNKADDPLWKDPAKAYETAKKLDYDANKIVWLT 172
Query: 105 ENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN-NN 162
+ + +AV + S D+ KY G + + L
Sbjct: 173 PSPANNTWGIAVRKDVANENKLASLSDLGKYIAGGGKVVLAASSEFVNSAAALPAFQTAY 232
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
F+LK +LI S + + I N + + + + L +
Sbjct: 233 GFTLKPDQLITLSGGDTAATIAAAANQTNGANAAMVYGTDGGIAPSGLVVLED--DKHVQ 290
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++R + L K P I LLK + K + ++ + + + V L+
Sbjct: 291 PVYQPAPIIREEVLKKDPKIEELLKPVFEKLDLTTLQDLNGRVQLGGEPAKAVAEDFLKK 350
Query: 280 H 280
+
Sbjct: 351 N 351
>gi|74312655|ref|YP_311074.1| putative transport system permease [Shigella sonnei Ss046]
gi|73856132|gb|AAZ88839.1| putative transport system permease protein [Shigella sonnei Ss046]
Length = 305
Score = 98.8 bits (244), Expect = 9e-19, Method: Composition-based stats.
Identities = 41/312 (13%), Positives = 88/312 (28%), Gaps = 36/312 (11%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
K+ A L + + A PV+ T+ A + +LE G T ++
Sbjct: 5 KVWAGSLVMLAAVSLPLQAAS---PVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQ 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L PV ++ + +DI+ Y F +
Sbjct: 61 LGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDAAWKNAQQGYEKVKKLDAEQNKLIW 120
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMIN 160
+ + +AV + + K+ E +
Sbjct: 121 LTPAPANNTWTIAVRQDVAEKNKLTSLADLSRYLKEGGTFKLAASAEFIERADALPAFEK 180
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + + +++ + L + L + +
Sbjct: 181 AYDFKLDQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPKGV- 239
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ VVR L + P +++ L+ + ++ I D + V L
Sbjct: 240 -QPIYAPAPVVRESVLKEYPQMAQWLQPVFASLDAKTLQQLNASIAVEGLDAKKVAADYL 298
Query: 278 RTHPDLLKNWLI 289
+ K W
Sbjct: 299 KQ-----KGWTK 305
>gi|83749064|ref|ZP_00946070.1| Transporter [Ralstonia solanacearum UW551]
gi|83724254|gb|EAP71426.1| Transporter [Ralstonia solanacearum UW551]
Length = 613
Score = 98.8 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 32/299 (10%), Positives = 73/299 (24%), Gaps = 31/299 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+ +ILA ++ ++ A + P+R +T+ + + +
Sbjct: 105 LRRILA---WMALGWLACGALAWAEPPLRIGSKRFTESYVLGEVLTQTAAPHGPAEHVPG 161
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQ------------ 108
L + F +LK+ ID++ Y + + + + A L
Sbjct: 162 LGNTAIVFAALKSGNIDLYPEYLGTIAAEILHLPPAQAADPDQAALLADVNRALAPLGLG 221
Query: 109 -----GAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK 163
G + A+ + +A ++ + +
Sbjct: 222 AGVPLGFEDTYALAMREADAERSGLRTLADLAAHPALRLGLSHEFLGRADGWPALAARYR 281
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+ L R V + ++ L F
Sbjct: 282 LPQQPIGLDHGV-------AYDALRAGQTDVIDIYSTDARIRREHLRVLEDS--AHVFPR 332
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ R D + P + + + + M + Q V L H
Sbjct: 333 YDAVVLYRLDVPARHPAQWQAISALAGRIHRDDMVAMNAAVELEGQSFARVASQFLAGH 391
>gi|207742524|ref|YP_002258916.1| abc type transporter : periplasmic glycine betaine /
choline-binding lipoprotein and permease components
[Ralstonia solanacearum IPO1609]
gi|206593916|emb|CAQ60843.1| abc type transporter : periplasmic glycine betaine /
choline-binding lipoprotein and permease components
[Ralstonia solanacearum IPO1609]
Length = 520
Score = 98.8 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 32/299 (10%), Positives = 73/299 (24%), Gaps = 31/299 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+ +ILA ++ ++ A + P+R +T+ + + +
Sbjct: 12 LRRILA---WMALGWLACGALAWAEPPLRIGSKRFTESYVLGEVLTQTAAPHGPAEHVPG 68
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQ------------ 108
L + F +LK+ ID++ Y + + + + A L
Sbjct: 69 LGNTAIVFAALKSGNIDLYPEYLGTIAAEILHLPPAQAADPDQAALLADVNRALAPLGLG 128
Query: 109 -----GAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK 163
G + A+ + +A ++ + +
Sbjct: 129 AGVPLGFEDTYALAMREADAERSGLRTLADLAAHPALRLGLSHEFLGRADGWPALAARYR 188
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+ L R V + ++ L F
Sbjct: 189 LPQQPIGLDHGV-------AYDALRAGQTDVIDIYSTDARIRREHLRVLEDS--AHVFPR 239
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ R D + P + + + + M + Q V L H
Sbjct: 240 YDAVVLYRLDVPARHPAQWQAISALAGRIHRDDMVAMNAAVELEGQSFARVASQFLAGH 298
>gi|320176632|gb|EFW51674.1| Osmoprotectant ABC transporter binding protein YehZ [Shigella
dysenteriae CDC 74-1112]
Length = 305
Score = 98.8 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 40/302 (13%), Positives = 86/302 (28%), Gaps = 31/302 (10%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
K+ A L L A PV+ T+ A + +LE G T ++
Sbjct: 5 KVWAGSLVLLAAVSLPLHAAS---PVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQ 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L PV ++ + +DI+ Y F +
Sbjct: 61 LGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDAAWKNAQQGYEKVKKLDAEQNKLIW 120
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMIN 160
+ + + +AV + + K+ E +
Sbjct: 121 LTPAPANSTWTIAVRQDVAEKNKLTSLADLSRYLKEGGTFKLAASAEFIERADALPAFEK 180
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + + +++ + L + L + +
Sbjct: 181 AYGFKLGQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV- 239
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ VVR L + P +++ L+ + ++ I D + V L
Sbjct: 240 -QPIYAPAPVVRESVLKEYPQMAQWLQPVFASLDAKTLQQLNASIAVEGLDAKKVAADYL 298
Query: 278 RT 279
+
Sbjct: 299 KQ 300
>gi|317508894|ref|ZP_07966531.1| hypothetical protein HMPREF9336_02903 [Segniliparus rugosus ATCC
BAA-974]
gi|316252778|gb|EFV12211.1| hypothetical protein HMPREF9336_02903 [Segniliparus rugosus ATCC
BAA-974]
Length = 314
Score = 98.8 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 37/308 (12%), Positives = 87/308 (28%), Gaps = 38/308 (12%)
Query: 3 KILAVCLFLTTFSISYARDAD---------SCTPVRFADTGWTDIAATTAMTSVILEEIL 53
++ A+ L S S V + A + + L
Sbjct: 6 RLTALSAALGILSASCGSSDPFSTDTGADPDPNTVVVGSAAIPESEAVADIYILALRAN- 64
Query: 54 GYKT--NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLE---------------KFIAPYLE 96
G+ + +L I + Y L + L
Sbjct: 65 GFHAGGKQGVGQREGYIPALSAGQISVVPEYTGNLLHYLSQNTKAATAEQIKAELDQALA 124
Query: 97 EGSIKLVAENLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRI 155
+ A + V G+ S D+A + E K+ G + +Q +
Sbjct: 125 AVKLVAYAPAPASNTDSITVTKKLAQSWGLASIADLAPHASEF--KVAGNAEFRQRSQGL 182
Query: 156 LDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG 215
+ S+ + ++ + + I + R + P ++ ++ L
Sbjct: 183 AGLQEIYGISVPADHFVPINDSSGPATI-KALREGQVQGADVYTTTPALAEGDLVALADP 241
Query: 216 EEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLIL-NNKQDRQFV 272
+ + +V +V + P + R+L + + + ++ + I + Q+ +
Sbjct: 242 KGLF--PPNNVVPIVSAR--KDTPKLRRVLDAVSAQLTTEDLAQINRAISGDGGQEPEEA 297
Query: 273 GRTMLRTH 280
L+ H
Sbjct: 298 AAGWLKAH 305
>gi|311112854|ref|YP_003984076.1| glycine betaine/choline ABC transporter substrate-binding protein
[Rothia dentocariosa ATCC 17931]
gi|310944348|gb|ADP40642.1| glycine betaine/choline ABC superfamily ATP binding cassette
transporter, substrate-binding protein [Rothia
dentocariosa ATCC 17931]
Length = 335
Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 40/304 (13%), Positives = 82/304 (26%), Gaps = 37/304 (12%)
Query: 2 YKILAVCLFLTTFSISYARD-------ADSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
+ L V L T A + + + + S L + G
Sbjct: 37 RRALGVVGALGTLGALSACGLSGENVFGGEHDGIIVGSAAFAESQILAEIYSQALNKN-G 95
Query: 55 YK--TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL----- 107
+K T + + A +L + ID+ Y L + +++
Sbjct: 96 FKSSTQLGIGAREAYLGALTSGAIDVVPEYSGNLLLYLDENSKAQTKQEILQALGGVLDK 155
Query: 108 ---------QGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILD 157
K L V + + D+AK EL KI E I
Sbjct: 156 NLKALDASQAENKDTLVVTQQTAQKYNLHTLDDMAKVCTEL--KIGAAPEFAERAYGIPG 213
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
+ + F + + + ++N V + P + N L +
Sbjct: 214 LKDKYGCVPAEFV---SLADGGGALTVKALQDNTVQVVDLYSTTPAITQNNFVMLEDPKN 270
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQ-DRQFVGR 274
V ++ + + + + +L I + + + +K+ D
Sbjct: 271 --MIPAQQVLPIINTKRVPE--DAQAVLNRISAVLTTDDLRSLNDEVSGDKKLDPSTAAA 326
Query: 275 TMLR 278
L+
Sbjct: 327 NWLK 330
>gi|254283768|ref|ZP_04958736.1| ABC transporter amino acid permease [gamma proteobacterium NOR51-B]
gi|219679971|gb|EED36320.1| ABC transporter amino acid permease [gamma proteobacterium NOR51-B]
Length = 494
Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 34/293 (11%), Positives = 78/293 (26%), Gaps = 32/293 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M I VC+ + + + AD +R A + + M + +L G + +
Sbjct: 1 MQAIFRVCVLVLAIAQTSVAFADG---IRVASKTFVESYLLGEMVTQLLSAR-GVEAEHQ 56
Query: 61 L--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIA----------PYLEEGSIKLVAENLQ 108
VTF +L ID++ Y + + L +++
Sbjct: 57 QGLGGTLVTFTALGTGEIDVYPDYTGTLAQAVLGQPELTGAALIEALNARGLRIAVNLGF 116
Query: 109 GAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
Y LA+ + S I+ + + N +
Sbjct: 117 SNSYALAIPETLAQE--LSISTISDLARHPDLRGVFSHEFLRRNDGWSSLRRYYGL---- 170
Query: 169 FRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYT 228
+ + + + + ++ + + L E +
Sbjct: 171 ---QQQAAGIEHALAYDALASGSADLTEAYTTDGELVERGLVVLEDDRGFF--PEYAAVL 225
Query: 229 VVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+VR D + R L+ + + + + V ++ L
Sbjct: 226 LVREDLSES---AVRHLQELSGVLDAQRMRSLNHRVSILGETPAAVAQSALAE 275
>gi|330821154|ref|YP_004350016.1| glycine betaine transporter periplasmic subunit [Burkholderia
gladioli BSR3]
gi|327373149|gb|AEA64504.1| glycine betaine transporter periplasmic subunit [Burkholderia
gladioli BSR3]
Length = 342
Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 37/317 (11%), Positives = 86/317 (27%), Gaps = 45/317 (14%)
Query: 15 SISYARD-ADSCTPVRFADTG-WTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLK 72
++A+D ++++ + T + ++ LGY+ + + + F+++
Sbjct: 21 VPAFAQDMPGKGRTIQYSQGDSFGGNYVATQIVMAAMK-RLGYEVKLTTMNTTLFFQAVA 79
Query: 73 NKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIA 132
D+ +P E ++ I + G ++ +
Sbjct: 80 QGDEDLATDVNFPQRELAFRAVQKDAQIVGTGMIVGGGINGYLIDKKTADAYKITNLAQL 139
Query: 133 KYKK-------ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
K K + A++ +PG + + + A
Sbjct: 140 KDPKLAALFGSDGKAQLISCDPGWSCGDVVDFQLRKFGLQDTVRA-VRGKYEALMVDTVA 198
Query: 186 DQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEEI----------------------- 218
+ PA F +W P S ++ +LP E
Sbjct: 199 RIKQGKPAFFYAWSPSWTVSSLVPGKDVVWLPTPEAALPPNMPNSGSPLVSGVKGCAGDA 258
Query: 219 ----SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQ---F 271
+ V ++ P I L++ IKF + I +
Sbjct: 259 DPCRMAMASWNWGAVGNRGFIAANPAIRSLIEQIKFPSTTWSAWEYAISRKGGSQALITQ 318
Query: 272 VGRTMLRTHPDLLKNWL 288
+ + + L W+
Sbjct: 319 LAGEWMAGNKAQLDQWI 335
>gi|294817535|ref|ZP_06776177.1| Substrate-binding region of ABC-type glycine betaine transport
system [Streptomyces clavuligerus ATCC 27064]
gi|294322350|gb|EFG04485.1| Substrate-binding region of ABC-type glycine betaine transport
system [Streptomyces clavuligerus ATCC 27064]
Length = 329
Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 31/297 (10%), Positives = 82/297 (27%), Gaps = 30/297 (10%)
Query: 8 CLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVP 65
A A + + + +T+ +T + L+ G K +
Sbjct: 35 ATAAVGSGSIKADAALTGRTLTVSSKDFTESIVLGQITKLALQAA-GAKVKDKTNIKGSA 93
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIA-----------------PYLEEGSIKLVAENLQ 108
T +L +K +D++ Y ++ + ++ +
Sbjct: 94 NTRAALTSKEVDLYWDYTGTGWIIYLKHTDPVKGAAAQFKAVADEDRAKNGVRWLTPAPA 153
Query: 109 GAKYMLAVNDVGFAL-GIKSYQDIAKYKKELGAKIYGI--EPGNEGNQRILDMINNNKFS 165
+ LAV + S D A + + A + N +I
Sbjct: 154 DNTFALAVLSAKARQWKLTSLSDFAAFARSRPADATVCLESEFSTRNDGWPGLIRAYGID 213
Query: 166 LKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEAS 225
+ + +++ + + ++L + L + +
Sbjct: 214 IPKSNIKLVDTGVVYTETA---KGTTCNFGEVFATDGRITNLKLTTLEDDRQFF--PVYN 268
Query: 226 VYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+R++ D P+I +++ I + A + + + V L+ +
Sbjct: 269 PALTLRTETADSYPSIGQIMAPIAARLDNATLRGLNAQVAVDGLPPDRVAEGWLKKN 325
>gi|172064070|ref|YP_001811721.1| substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia ambifaria MC40-6]
gi|171996587|gb|ACB67505.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia ambifaria MC40-6]
Length = 306
Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 43/303 (14%), Positives = 89/303 (29%), Gaps = 28/303 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--N 58
M L + + + A A + TPV + T+ + + +L+ G
Sbjct: 1 MKLALPARILGLALAAAVAPGAHADTPVVVSSKIDTEGNLLGNVIAQVLKAH-GIPVTEK 59
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------I 100
I L P+ ++L + IDI+ Y + F +
Sbjct: 60 IALGTTPIVRKALTSGEIDIYPEYTGNAAFFFNKADDPAWKNASQGYDTAKKLDYAANHL 119
Query: 101 KLVAENLQGAKYMLAVNDVGFA-LGIKSYQDIAKYK-KELGAKIYGIEPGNEGNQRILDM 158
+ + +AV +K+ D K+ K+ +
Sbjct: 120 VWLTPAPANNTWGVAVLAPVAQSQHLKTLSDFGKWTVGGGKVKLAASAEFVNSPSALPSF 179
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEE 217
F LK +L+ S + + I+ + + + + + L +
Sbjct: 180 EKAYGFKLKPDQLVVLSGGDTAATIKAAANQTDGVNAAMVYGTDGGIASSGLVVLDD--D 237
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
+ V+R L P I+ LK + + + I N + V ++
Sbjct: 238 KHVQPVYAPTPVIREAALKAHPQIADYLKPVFASLDLKTLQTLNARIQINGEPAAGVAKS 297
Query: 276 MLR 278
L+
Sbjct: 298 YLK 300
>gi|283785928|ref|YP_003365793.1| ABC transporter substrate-binding protein [Citrobacter rodentium
ICC168]
gi|282949382|emb|CBG88993.1| ABC transporter, substrate-binding protein [Citrobacter rodentium
ICC168]
Length = 305
Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 37/288 (12%), Positives = 82/288 (28%), Gaps = 33/288 (11%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGIDIFMGYWY 84
PV+ T+ A + +LE G +T ++L PV ++ + +DI+ Y
Sbjct: 26 PVKVGSKIDTEGALLGNIILQVLESH-GVETVNKVQLGTTPVVRGAITSGELDIYPEYTG 84
Query: 85 PSLEKFIAPYLEEGS------------------IKLVAENLQGAKYMLAVNDVGFALGIK 126
F + + + +AV +
Sbjct: 85 NGAFFFKDENDPAWKNAQAGYEKVKKLDAEQNKLVWLTPAPANNTWTIAVRNDIAEKNKL 144
Query: 127 SYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
+ + K+ E + F L +L+ + + I+
Sbjct: 145 TSLADLGRYLKEGGVFKLAASAEFIERADALPAFEKAYDFKLSQDQLLSLAGGDTAVTIK 204
Query: 185 RDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
+ + +++ + L + L + + + VVR L P ++
Sbjct: 205 AAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPKGV--QPIYAPAPVVREAVLKAYPQMAE 262
Query: 244 LLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
L+ + ++ I D + V L+ K W+
Sbjct: 263 WLQPVFASLDEKTLQQLNASIAVEGLDAKKVAADYLKQ-----KGWVK 305
>gi|15807804|ref|NP_285459.1| ABC transporter periplasmic substrate-binding protein [Deinococcus
radiodurans R1]
gi|6460519|gb|AAF12225.1|AE001862_51 ABC transporter, periplasmic substrate-binding protein, putative
[Deinococcus radiodurans R1]
Length = 369
Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 39/284 (13%), Positives = 80/284 (28%), Gaps = 34/284 (11%)
Query: 26 TPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGIDIFMGYW 83
V T+ A +T LE G+K A V ++L ID++ Y
Sbjct: 89 KTVTVGSKIDTEGALLCQITKQALERG-GFKVNDKCSTGATNVVRKALLQGEIDLYPEYT 147
Query: 84 YP----------------------SLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ A L+ + ++ + +AV
Sbjct: 148 GSAIYLLTEAGQKIDPKVSRDAVKAYTTVKALDLKVNKVVWLSRAPANNTWAVAVPSKLA 207
Query: 122 AL-GIKSYQDIAKYKKELGA-KIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+K+ D A+Y K+ + + + + F L +L+ +
Sbjct: 208 QANNLKTMADFARYVNSGKPVKLAASQEFVDRDDALKAFEKAYGFKLSPAQLV-IVPGGN 266
Query: 180 FSQIRRDQRNNI--PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDK 237
+Q +++ L + L + VR K
Sbjct: 267 TTQTETAAAQGTSGVNAAMAYGTDGAIGALGLVALSDPKGA--VAVYQPALTVRQSVAQK 324
Query: 238 CPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
P+I++++ I K ++ I + V ++ L
Sbjct: 325 YPDIAKIMNPIFAKLDAGTLAQLNGRIAVGGESAAAVAKSWLAK 368
>gi|24113522|ref|NP_708032.1| putative transport system permease protein [Shigella flexneri 2a
str. 301]
gi|30063578|ref|NP_837749.1| putative transport system permease protein [Shigella flexneri 2a
str. 2457T]
gi|24052564|gb|AAN43739.1| putative transport system permease protein [Shigella flexneri 2a
str. 301]
gi|30041831|gb|AAP17558.1| putative transport system permease protein [Shigella flexneri 2a
str. 2457T]
gi|281601589|gb|ADA74573.1| putative transport system permease protein [Shigella flexneri
2002017]
gi|332755749|gb|EGJ86110.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Shigella flexneri K-671]
gi|332756431|gb|EGJ86782.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Shigella flexneri 2747-71]
gi|333016623|gb|EGK35952.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Shigella flexneri K-304]
Length = 305
Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 39/302 (12%), Positives = 86/302 (28%), Gaps = 31/302 (10%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
K+ A L + + A PV+ T+ A + +LE G T ++
Sbjct: 5 KLWAGSLVMLAAVSLPLQAAS---PVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQ 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L PV ++ + +DI+ Y F +
Sbjct: 61 LGTTPVGRGAITSDELDIYPEYTGNGAFFFKDENDAAWKNAGQGYEKVKKLDAEHNKLIW 120
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMIN 160
+ + +AV + + K+ E +
Sbjct: 121 LTPAPANNTWTIAVRQDVAEKNKLTSLADLSRYLQEGGTFKLAASAEFIERADALPTFEK 180
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + + +++ + L + L + +
Sbjct: 181 AYGFKLGQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV- 239
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ VVR L + P +++ L+ + ++ I D + V L
Sbjct: 240 -QPIYAPAPVVRESVLKEYPQMAQWLQPVFASLDAKTLQQLNASIAVEGLDAKKVAADYL 298
Query: 278 RT 279
+
Sbjct: 299 KQ 300
>gi|238799053|ref|ZP_04642512.1| hypothetical protein ymoll0001_14530 [Yersinia mollaretii ATCC
43969]
gi|238717106|gb|EEQ08963.1| hypothetical protein ymoll0001_14530 [Yersinia mollaretii ATCC
43969]
Length = 294
Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 39/291 (13%), Positives = 84/291 (28%), Gaps = 28/291 (9%)
Query: 14 FSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSL 71
+ + + + VR T+ + + +L+ G KT +L V ++
Sbjct: 1 MVAAVSGVSHAADTVRVGSKIDTEGSLLGNIIVQVLDAN-GIKTTNKSQLGTTKVVRGAI 59
Query: 72 KNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKLVAENLQGAKYM 113
IDI+ Y F + ++ +
Sbjct: 60 TAGEIDIYPEYTGNGAFFFSDEKDPAWKDSKAGYEKVKALDYEKNKLVWLSPAPANNTWT 119
Query: 114 LAVNDVGFALG-IKSYQDIAKYKKEL-GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
+AV +K+ D+ K+ K+ E + F L +L
Sbjct: 120 IAVRQDLAQANNLKTLDDLGKWINAGGKFKLAASAEFIERPDALPAFQQAYGFKLNQDQL 179
Query: 172 IEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
+ + + I+ + +++ + L + L + + + ++
Sbjct: 180 LSLAGGDTAVTIKAAAEQTSGVNAAMAYGTDGPVAALGLQTLGDPKGV--QPIYAPTPII 237
Query: 231 RSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
R L K P I LL + ++ I QD + V L+
Sbjct: 238 REATLKKYPTIPELLNPVFATLDGPTLQKLNARIAVEGQDAKKVAANYLKE 288
>gi|291302628|ref|YP_003513906.1| Substrate-binding region of ABC-type glycine betaine transporter
[Stackebrandtia nassauensis DSM 44728]
gi|290571848|gb|ADD44813.1| Substrate-binding region of ABC-type glycine betaine transport
system [Stackebrandtia nassauensis DSM 44728]
Length = 337
Score = 98.0 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 35/336 (10%), Positives = 75/336 (22%), Gaps = 66/336 (19%)
Query: 1 MYKI-LAVCLFLTTFSISYARDADSCT-------------------PVRFADTGWTDIAA 40
M + L + L + + S + P+ +T+
Sbjct: 1 MRRTKLLLTGALVAVLAACGLEPASQSVPDVQGGPELAEFDNLGEAPIVTTSKDFTEQLI 60
Query: 41 TTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGIDIFMGYWYPSL----------- 87
M S++L+ G + ++ N DI Y +
Sbjct: 61 LGKMLSLVLKAK-GADVADHTNTKGSVNARETILNGSSDIAWEYTGTAWLVYMGHSDVDP 119
Query: 88 -----------------EKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKS--- 127
E L++ + Y +A+ + +
Sbjct: 120 KTSEAGGVKISDPEALYEAVKKADLKDNDVVWGDPAPFNNTYAMAIKEDQAKQKDANGKT 179
Query: 128 --YQDIAKYKKELGAKIYGI--EPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
+ ++ K K M + + I
Sbjct: 180 IDVKSLSDLAKLPPDKQTYCLENEFENRPDGWPGMQQAYDIDVPKDNVTIMDTGV----I 235
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
++ + L + E +V R + K P I +
Sbjct: 236 YSRIGGGSCLAGEVFDTDGRIPANGLRTLEDDKGYFPIYEPAVTI--REEIHKKHPQIVQ 293
Query: 244 LLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ + K S + + + +D V R L
Sbjct: 294 MFNKLGSKLSTETMRRLNAEVDVDGRDPLDVAREWL 329
>gi|311278885|ref|YP_003941116.1| Substrate-binding region of ABC-type glycine betaine transport
system [Enterobacter cloacae SCF1]
gi|308748080|gb|ADO47832.1| Substrate-binding region of ABC-type glycine betaine transport
system [Enterobacter cloacae SCF1]
Length = 302
Score = 98.0 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 42/279 (15%), Positives = 85/279 (30%), Gaps = 28/279 (10%)
Query: 26 TPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGIDIFMGYW 83
PV+ T+ A + +LE G KT ++L PV ++ + +DI+ Y
Sbjct: 22 EPVKVGSKIDTEGALLGNIILQVLESH-GVKTVNKVQLGTTPVVRGAITSGELDIYPEYT 80
Query: 84 YPSLEKFIAPYLEEG------------------SIKLVAENLQGAKYMLAVNDVGFALG- 124
F + + + +AV
Sbjct: 81 GNGAFFFKDESDPAWKNAQQGYEKVKKLDAEQNKLIWLTPAPANNTWTIAVRQDLAQKNK 140
Query: 125 IKSYQDIAKYKKE-LGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
+ S D++ Y K+ K+ E + F L +L+ + + I
Sbjct: 141 LVSLADLSGYLKQGGTFKLAASAEFIERPDALPAFEKAYGFRLDQGQLLSLAGGDTAVTI 200
Query: 184 RRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ + + +++ + L + L + + + VVR L + P I+
Sbjct: 201 KAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPKGV--QPIYAPTPVVREAVLKEYPQIA 258
Query: 243 RLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
LK + ++ I D + V L+
Sbjct: 259 EWLKPVFEGLDEKTLQKLNASIAVEGLDAKKVAADWLKQ 297
>gi|258651637|ref|YP_003200793.1| substrate-binding region of ABC-type glycine betaine transporter
[Nakamurella multipartita DSM 44233]
gi|258554862|gb|ACV77804.1| Substrate-binding region of ABC-type glycine betaine transport
system [Nakamurella multipartita DSM 44233]
Length = 324
Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 35/269 (13%), Positives = 80/269 (29%), Gaps = 22/269 (8%)
Query: 27 PVRFADTGWTDIAATTAMTSVIL-EEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYP 85
+ + + A + + L + L TN+ + + V +++++ ID+ Y
Sbjct: 61 KIVVGSANFPESALLANIYAAALTKAGLDASTNLNIGSREVYIKAIQDGSIDLVPEYSGV 120
Query: 86 SLEKFIAPYLEEGSIKLVAENLQGAKYML------------AVNDVGFALGIKSYQDIAK 133
L+ F + + A ++ L AV + IA
Sbjct: 121 LLQYFDPTATAVSADDVYAALVKATPQGLVVLEKSAAEDKDAVVVTKATAEANNLTSIAD 180
Query: 134 YKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPA 193
I G E + + + L + ++
Sbjct: 181 LAPVASTFILGGPSEWETRPTGVPGLKEK-YGLTFKEFKALDAGGPLTL--NALLSDQVQ 237
Query: 194 VFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFS 251
+ P ++ L + + +V ++RSD ++ L + K
Sbjct: 238 AGNLFTTDPAIPANDLVVLEDPKNLF--AAQNVLPLIRSD--ANNAQVTEALNAVSAKLD 293
Query: 252 VALENEMMKLILNNKQDRQFVGRTMLRTH 280
A E++ + +KQD V + + +
Sbjct: 294 TATLTELLTKVAVDKQDSAQVAQEWVAQN 322
>gi|145221799|ref|YP_001132477.1| substrate-binding region of ABC-type glycine betaine transport
system [Mycobacterium gilvum PYR-GCK]
gi|145214285|gb|ABP43689.1| Substrate-binding region of ABC-type glycine betaine transport
system [Mycobacterium gilvum PYR-GCK]
Length = 316
Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/283 (9%), Positives = 71/283 (25%), Gaps = 24/283 (8%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKN 73
+ + ++ +T+ + + LE + + + ++++
Sbjct: 32 LGGGEISGDLKTIKVGSADFTESKIIAEIYAQALEAN-DFTITRQFGIGSRETYIPAVQD 90
Query: 74 KGIDIFMGYWYPSLEKFIAPYLEEG--------------SIKLVAENLQGAKYMLAVNDV 119
ID+ Y L+ F A + ++ + K LAV +
Sbjct: 91 HSIDLIPEYTGNLLQYFDADSTATTPDEVLLALFNALPGDLSILYPSPAEDKDTLAVTEE 150
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ IA G ++ + + + S+
Sbjct: 151 TAQR--WNLTSIADLAARSPEVKVGAPSEFQTRYTGLVGLKEKYGLDIAPANFVAISDGG 208
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+ + + + + P + L E + V V +
Sbjct: 209 GPATV-QALSSGAITAANIFSTSPAIEQSRLVVLDDPENVFL-AANVVPLVASQKMSAEL 266
Query: 239 PNISRLLKNIKFSVALENEMMKLIL-NNKQDRQFVGRTMLRTH 280
+ + K + E+ + N D + + +
Sbjct: 267 KTVLDAVSA-KLTTEALIELNTSVEGNQGIDPDEAAQKWIADN 308
>gi|224826302|ref|ZP_03699404.1| Substrate-binding region of ABC-type glycine betaine transport
system [Lutiella nitroferrum 2002]
gi|224601403|gb|EEG07584.1| Substrate-binding region of ABC-type glycine betaine transport
system [Lutiella nitroferrum 2002]
Length = 308
Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 43/302 (14%), Positives = 96/302 (31%), Gaps = 28/302 (9%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NI 59
L C L + ++ + +R T+ + + LE G KT +
Sbjct: 4 RTTLRRCAALALAGMLWSAHGQAAEGLRVGSKIDTEGSLLGNLILQTLEAH-GIKTVNRL 62
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------------------EGSIK 101
+L V ++ + +DI+ Y F + I
Sbjct: 63 QLGNTKVIREAITSGEVDIYPEYTGNGAFFFSDEKNPVWKNAKAGYERVKALDFEKNRIV 122
Query: 102 LVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKEL-GAKIYGIEPGNEGNQRILDMI 159
+ + + +A+ + +K+ D+ ++ + K+ E +
Sbjct: 123 WLTPSPANNTWAIAIRKDVASANKLKTLADLGQWISKGGNFKLAASAEFIERPDALPAFE 182
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
F LK +L+ + + I+ + +++ + L + L +
Sbjct: 183 QAYGFKLKQDQLLTLAGGDTSVTIKAAAEKTSGVNAAMAYGTDGPVAALGLVTLDDVRGV 242
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKN--IKFSVALENEMMKLILNNKQDRQFVGRTM 276
+ ++RS+ L K P + LLK + A ++ I QD + V +
Sbjct: 243 --QPIYAPTPIIRSEALGKYPKVRELLKPVFLSLDGATLQKLNGQIAIEGQDARKVAASY 300
Query: 277 LR 278
L+
Sbjct: 301 LK 302
>gi|323187857|gb|EFZ73153.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Escherichia coli RN587/1]
Length = 289
Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 37/291 (12%), Positives = 83/291 (28%), Gaps = 33/291 (11%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGIDIFMG 81
+ +PV+ T+ A + +LE G T ++L PV ++ + +DI+
Sbjct: 7 AASPVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQLGTTPVVRGAITSGELDIYPE 65
Query: 82 YWYPSLEKFIAPYLEEGS------------------IKLVAENLQGAKYMLAVNDVGFAL 123
Y F + + + +AV
Sbjct: 66 YTGNGAFFFKDENDTAWKNAQQGYEKVKKLDAEQNKLIWLTPAPANNTWTIAVRQDVAEK 125
Query: 124 GIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
+ + K+ E + F L +L+ + +
Sbjct: 126 NKLTSLADLSRYLQEGGTFKLAASAEFIERADALPAFEKAYGFKLGQDQLLSLAGGDTAV 185
Query: 182 QIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
I+ + + +++ + L + L + + + VVR L + P
Sbjct: 186 TIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV--QPIYAPAPVVRESVLKEYPQ 243
Query: 241 ISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+++ L+ + ++ I D + V L+ K W
Sbjct: 244 MAQWLQPVFASLDAKTLQQLNASIAVEGLDAKKVAADYLKQ-----KGWTK 289
>gi|315446464|ref|YP_004079343.1| periplasmic glycine betaine/choline-binding (lipo)protein of an ABC
transporter (osmoprotectant binding protein)
[Mycobacterium sp. Spyr1]
gi|315264767|gb|ADU01509.1| periplasmic glycine betaine/choline-binding (lipo)protein of an
ABC-type transport system (osmoprotectant binding
protein) [Mycobacterium sp. Spyr1]
Length = 316
Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/283 (9%), Positives = 71/283 (25%), Gaps = 24/283 (8%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKN 73
+ + ++ +T+ + + LE + + + ++++
Sbjct: 32 LGGGEISGDLKTIKVGSADFTESKIIAEIYAQALEAN-DFTITRQFGIGSRETYIPAVQD 90
Query: 74 KGIDIFMGYWYPSLEKFIAPYLEEG--------------SIKLVAENLQGAKYMLAVNDV 119
ID+ Y L+ F A + ++ + K LAV +
Sbjct: 91 HSIDLIPEYTGNLLQYFDADSTATTPDEVLLALFNALPGDLSILYPSPAEDKDTLAVTEE 150
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ IA G ++ + + + S+
Sbjct: 151 TAQR--WNLTSIADLAARSPEVKVGAPSEFQTRYTGLVGLKEKYGLDIAPANFVAISDGG 208
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+ + + + + P + L E + V V +
Sbjct: 209 GPATV-QALSSGAITAANIFSTSPAIEQSRLVVLDDPENVFL-AANVVPLVASQKMSAEL 266
Query: 239 PNISRLLKNIKFSVALENEMMKLIL-NNKQDRQFVGRTMLRTH 280
+ + K + E+ + N D + + +
Sbjct: 267 KTVLDAVSA-KLTTEALIELNTSVEGNQGIDPDEAAQKWIADN 308
>gi|254387986|ref|ZP_05003223.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
27064]
gi|326446142|ref|ZP_08220876.1| substrate-binding region of ABC-type glycine betaine transport
system [Streptomyces clavuligerus ATCC 27064]
gi|197701710|gb|EDY47522.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
27064]
Length = 327
Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 31/297 (10%), Positives = 82/297 (27%), Gaps = 30/297 (10%)
Query: 8 CLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVP 65
A A + + + +T+ +T + L+ G K +
Sbjct: 33 ATAAVGSGSIKADAALTGRTLTVSSKDFTESIVLGQITKLALQAA-GAKVKDKTNIKGSA 91
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIA-----------------PYLEEGSIKLVAENLQ 108
T +L +K +D++ Y ++ + ++ +
Sbjct: 92 NTRAALTSKEVDLYWDYTGTGWIIYLKHTDPVKGAAAQFKAVADEDRAKNGVRWLTPAPA 151
Query: 109 GAKYMLAVNDVGFAL-GIKSYQDIAKYKKELGAKIYGI--EPGNEGNQRILDMINNNKFS 165
+ LAV + S D A + + A + N +I
Sbjct: 152 DNTFALAVLSAKARQWKLTSLSDFAAFARSRPADATVCLESEFSTRNDGWPGLIRAYGID 211
Query: 166 LKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEAS 225
+ + +++ + + ++L + L + +
Sbjct: 212 IPKSNIKLVDTGVVYTETA---KGTTCNFGEVFATDGRITNLKLTTLEDDRQFF--PVYN 266
Query: 226 VYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+R++ D P+I +++ I + A + + + V L+ +
Sbjct: 267 PALTLRTETADSYPSIGQIMAPIAARLDNATLRGLNAQVAVDGLPPDRVAEGWLKKN 323
>gi|331683808|ref|ZP_08384404.1| putative transport system permease protein [Escherichia coli H299]
gi|331078760|gb|EGI49962.1| putative transport system permease protein [Escherichia coli H299]
Length = 305
Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 42/312 (13%), Positives = 87/312 (27%), Gaps = 36/312 (11%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
K+ A L L A PV+ T+ A + +LE G T ++
Sbjct: 5 KVWAGSLVLLAAVSLPLHAAS---PVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQ 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L PV ++ + +DI+ Y F +
Sbjct: 61 LGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDAAWKNAQQGYEKVKKLDAEQNKLIW 120
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMIN 160
+ + +AV + + K+ E +
Sbjct: 121 LTPAPANNTWTIAVRQDVVEKNKLTSLADLSRYLKEGGTFKLAASAEFIERADALPAFEK 180
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + + +++ + L + L + +
Sbjct: 181 AYDFKLDQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV- 239
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ VVR L + P +++ L+ + ++ I D + V L
Sbjct: 240 -QPIYAPAPVVRESVLKEYPQMAQWLQPVFASLDEKTLQQLNASIAVEGLDAKKVAADYL 298
Query: 278 RTHPDLLKNWLI 289
+ K W
Sbjct: 299 KQ-----KGWTK 305
>gi|218671071|ref|ZP_03520742.1| probable glycine betaine/L-proline ABC transporter,
substrate-binding protein [Rhizobium etli GR56]
Length = 194
Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 21/201 (10%), Positives = 56/201 (27%), Gaps = 28/201 (13%)
Query: 128 YQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI-EASELASFSQIRRD 186
+ + ++ G+ G+ + KGF L+ + + R
Sbjct: 1 PELFPAPENTSKGAVFNGPTGSGGSVVSAQLFKAYGGEAKGFDLVDPGTHAGLDGAMARA 60
Query: 187 QRNNIPAVFLSWEPHPI-------------------NSDLNIHYLPGGEEISGFGEASVY 227
+ + W P + N + + + + V
Sbjct: 61 YEHKEGWMGYYWSPTALLGKYSMVRLEAGVPHDAAEWKRCNTASDCPDPKKNEWPKDHVV 120
Query: 228 TVVRSDYLDK-CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKN 286
T+V + L+ + + +M + + + + + HP++ K+
Sbjct: 121 TLVSEKLAASGNAGVMDYLRKRSWDNQTVSSVMSWMTDTQAGGEDGAVHFFKEHPEIWKS 180
Query: 287 WLIGVTTFDGQDPSRQLERFM 307
WL D + ++ +
Sbjct: 181 WLS-------ADVAEKVTAAL 194
>gi|323184245|gb|EFZ69622.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Escherichia coli 1357]
Length = 293
Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 35/291 (12%), Positives = 83/291 (28%), Gaps = 28/291 (9%)
Query: 14 FSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSL 71
+ + + +PV+ T+ A + +LE G T ++L PV ++
Sbjct: 1 MLAAVSLPLQAASPVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQLGTTPVVRGAI 59
Query: 72 KNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKLVAENLQGAKYM 113
+ +DI+ Y F + + +
Sbjct: 60 TSGELDIYPEYTGNGAFFFKDENDAAWKNAQQGYEKVKKLDSEHNKLIWLTPAPANNTWT 119
Query: 114 LAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
+AV + + K+ E + F L +L
Sbjct: 120 IAVRQDVAEKNKLTSLADLSRYLQEGGTFKLAASAEFIERADALPAFEKAYGFKLGQDQL 179
Query: 172 IEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
+ + + I+ + + +++ + L + L + + + VV
Sbjct: 180 LSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV--QPIYAPAPVV 237
Query: 231 RSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
R L + P +++ L+ + ++ I D + V L+
Sbjct: 238 RESVLKEYPQMAQWLQPVFASLDAKTLQQLNASIAVEGLDAKKVAADYLKQ 288
>gi|300857517|ref|YP_003782500.1| hypothetical protein cpfrc_00100 [Corynebacterium
pseudotuberculosis FRC41]
gi|300684971|gb|ADK27893.1| putative secreted protein [Corynebacterium pseudotuberculosis
FRC41]
gi|302205255|gb|ADL09597.1| Periplasmic glycine betaine/choline-binding(lipo)protein
[Corynebacterium pseudotuberculosis C231]
gi|308275496|gb|ADO25395.1| Glycine betaine/choline-binding protein of an ABC-type transport
system [Corynebacterium pseudotuberculosis I19]
Length = 291
Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 38/298 (12%), Positives = 85/298 (28%), Gaps = 28/298 (9%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP----VRFADTGWTDIAATTAMTSVILEEILGYKT 57
+I + + + + D + + + + LE+ G+K
Sbjct: 3 KRIAVLGVAMCLTACGSIESVDGGRTDSDAIVIGSQTYYSNEVIAEIYAQALEKA-GHKV 61
Query: 58 NIKL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
+ + V ++N ID+F Y P L+ + + AE L
Sbjct: 62 DRQFQIGQREVYMSEVENGSIDVFPEYSGPLLQYWKPDTTARLPEAVYAELQSALPSSLQ 121
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIY-----------GIEPGNEGNQRILDMINNNKF 164
V + A SY +Y +E G K G E + +
Sbjct: 122 VLNQAEASDQDSYVVTKQYSEEHGIKSIQDLAKVKNITLGANSEAEDRPNGPKGLKSVYG 181
Query: 165 SLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEA 224
F IE S + ++ + + + P + N+ L + +
Sbjct: 182 VDAAFTPIEDSGGPLT---VKALKDGDIQLAIIYSADPSIAANNLVSLEDPKGQFL--AS 236
Query: 225 SVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
V + + +L + + + ++ + + + + L+ H
Sbjct: 237 RVVPLANKKLDAD---AAAVLNKVNAQLTTQDLIQLNTRSVTEQLPSALIAKEWLKAH 291
>gi|240168518|ref|ZP_04747177.1| putative osmoprotectant (glycine
betaine/carnitine/choline/L-proline) binding lipoprotein
[Mycobacterium kansasii ATCC 12478]
Length = 315
Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 34/302 (11%), Positives = 80/302 (26%), Gaps = 31/302 (10%)
Query: 4 ILAVCLFLTTFSISYARDAD-------SCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
+ A +T ++ +AD + + + + + + L+ G+
Sbjct: 12 LAAAVCLVTACPVAACGNADPFGSSNGTIKSIVVGSGDFPESQIVAEIYAQALQAN-GFD 70
Query: 57 T--NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
+ + + +LK+ ID+ Y L F + E + L
Sbjct: 71 VGRRLGIGSRETYIPALKDHSIDLVPEYIGNLLLYFQPDSTATMLDAVELELYKRLPGDL 130
Query: 115 AVNDVGFA------------LGIKSYQDIAKYKKELGAKIYGIEP-GNEGNQRILDMINN 161
++ A + IA + + +
Sbjct: 131 SILTPSPASDTDTVTVTKVTATKWNLTTIADLAAHSAEVKFAAPSVFQTRPAGLPGLRQK 190
Query: 162 NKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
+ + ++ + R + + P N+ L E
Sbjct: 191 YGLDIAPANFMTINDGGGAVTV-RALVDGTVTAANIFSTSPAIRQNNLVVLADPEHNFLA 249
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLIL-NNKQDRQFVGRTMLR 278
G ++ +V S + +L + K + E+ + N+ D R LR
Sbjct: 250 G--NIVPLVNSQKKSD--RLKDVLDAVSAKLTTEGMAELNAAVSGNDGVDPDQAARKWLR 305
Query: 279 TH 280
+
Sbjct: 306 DN 307
>gi|159037250|ref|YP_001536503.1| substrate-binding region of ABC-type glycine betaine transport
system [Salinispora arenicola CNS-205]
gi|157916085|gb|ABV97512.1| Substrate-binding region of ABC-type glycine betaine transport
system [Salinispora arenicola CNS-205]
Length = 327
Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 30/280 (10%), Positives = 76/280 (27%), Gaps = 30/280 (10%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPVTFRSLKNKGIDIFMG 81
+ +T+ +T L G + + ++L + +D++
Sbjct: 49 KGQTIVVGSKDFTENIVFGHITMQALTAA-GAEVEDKTNIKGSVNVRKALLSGDVDVYWD 107
Query: 82 YWYPSLEKFIAPYLE-----------------EGSIKLVAENLQGAKYMLAVNDVGFAL- 123
Y + ++ + ++ A Y LAV +
Sbjct: 108 YTGTAWITYLDHADPIQNSAEQYAAVVKEDKEKNNVVWGAFAPANNTYALAVREEKAEEW 167
Query: 124 GIKSYQDIAKYKKELGAKIYGI--EPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
+ + D+A + K N M ++ + ++
Sbjct: 168 NLNTLSDLAAFAKSNPEDATFCLESEFVGRNDGWPGMTKAYGMNVPADSVKVVDTGVVYT 227
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNI 241
+ + + + S LN+ L + S F + + D +I
Sbjct: 228 ETK---KGEACNFGEVFTTDGRISHLNLRVLED--DQSFFPIYNPAPTLNGDTAASYGSI 282
Query: 242 SRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+L+ I K ++ + + + + V L+
Sbjct: 283 LTILEPIVAKLDDDTLRQLNEKVDVDGEPVAQVVSEWLKA 322
>gi|296537427|ref|ZP_06899265.1| quaternary amine uptake ABC transporter family protein [Roseomonas
cervicalis ATCC 49957]
gi|296262245|gb|EFH09032.1| quaternary amine uptake ABC transporter family protein [Roseomonas
cervicalis ATCC 49957]
Length = 322
Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 39/284 (13%), Positives = 85/284 (29%), Gaps = 28/284 (9%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPVTFRSLKNKGID 77
PV T+ A M + +LE G ++L + ++L ID
Sbjct: 36 AARAQDRPVVVGSKLDTEGALLGEMMAQLLEAK-GSAVQRRLQLGPTRIVRQALLAGEID 94
Query: 78 IFMGYWYPSLEKFIAPYLEEG------------------SIKLVAENLQGAKYMLAVNDV 119
++ Y F + + + +AV
Sbjct: 95 LYPEYTGNGAFFFQMEDDPAWRDPAQAAAKVRALDAERNRLVWLEPAAANNTWAIAVRRD 154
Query: 120 GF-ALGIKSYQDIAKY-KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
+++ +D+A++ + + K+ E + F+L RL+ S
Sbjct: 155 LARQANLRTLEDLARHLQADGSFKLAASAEFVESPAALPAFQKAYGFTLPPARLLVLSGG 214
Query: 178 ASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
+ +R N + + L++ L + VVR +
Sbjct: 215 DTAVTMRAAAERLNGVNAAMVYGTDGAIQALDLVVLEDPKGAQM--VYQPAPVVRQAVAE 272
Query: 237 KCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
+ P ++ ++ + S + + I+ + Q + V LR
Sbjct: 273 RLPQLAEWMRPLFASLSRETLQRLNQRIVVDGQPARQVAEAHLR 316
>gi|306844874|ref|ZP_07477456.1| Substrate-binding region of ABC-type glycine betaine transport
system [Brucella sp. BO1]
gi|306274703|gb|EFM56487.1| Substrate-binding region of ABC-type glycine betaine transport
system [Brucella sp. BO1]
Length = 309
Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 50/301 (16%), Positives = 92/301 (30%), Gaps = 32/301 (10%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLL 62
A+ LF+ S +A V + T+ + +L G KT I+L
Sbjct: 12 FALALFVGAIQFSSLAEAQ----VVVSSKIDTEGGVLGNIILTVLNAN-GIKTTDRIQLG 66
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPS------------------LEKFIAPYLEEGSIKLVA 104
A PV +++ IDI+ Y + E + I +
Sbjct: 67 ATPVVRKAITAGEIDIYPEYTGNAAFFFNKADDPLWKDSAKAYETAKKLDYDANKIVWLT 126
Query: 105 ENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN-NN 162
+ + +AV + S D KY G + + L
Sbjct: 127 PSPANNTWGIAVRKDVANENKLASLSDFGKYIAGGGKVVLAASSEFVNSAAALPAFQTAY 186
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
F+LK +LI S + + I N + + + + L +
Sbjct: 187 GFTLKPDQLITLSGGDTAATIAAAANQTNGANAAMVYGTDGGIAPSGLVVLED--DKHVQ 244
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++R + L K P I LLK + K + ++ + + + V L+
Sbjct: 245 PVYQPAPIIREEVLKKNPKIEELLKPVFEKLDLTTLQDLNGRVQLGGEPAKAVAEDFLKK 304
Query: 280 H 280
+
Sbjct: 305 N 305
>gi|85710058|ref|ZP_01041123.1| ABC transporter permease protein [Erythrobacter sp. NAP1]
gi|85688768|gb|EAQ28772.1| ABC transporter permease protein [Erythrobacter sp. NAP1]
Length = 512
Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 30/293 (10%), Positives = 73/293 (24%), Gaps = 34/293 (11%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL-A 63
+A ++ Y D + A +++ + LE+ G+ +
Sbjct: 225 VAAVALGLGGALYYQSGGDDEDTIVIASKQFSEQYILAQLIGSQLEKA-GFNVEYRDGLG 283
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAP----------------YLEEGSIKLVAENL 107
V ++ N IDI + Y + E ++++
Sbjct: 284 SAVVHSAVANSSIDISVDYTGTIWTNELDRTDNPGREEMYQTIVEWERENTGVRVLGRLG 343
Query: 108 QGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
Y A+ + A + G +P + + +
Sbjct: 344 FENAYAFAMREDRAAE--LGVSSLEDLVPYGPQLAVGGDPEFFERPEWIAVRDAYGLRFG 401
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
+ S + + R+ V ++ + + L E
Sbjct: 402 E------TRNFSPTFMYNALRSGEADVISAYTSDGRIAADRLVVLEDPREAL--PSYDAM 453
Query: 228 TVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQ---DRQFVGRT 275
++ + I+R L+ + SV E + + +
Sbjct: 454 IMMSPRIAENE-EIARALEPLIGAISVEAMREANFAVDREGEGKLSPKEAAEE 505
>gi|119714719|ref|YP_921684.1| substrate-binding region of ABC-type glycine betaine transport
system [Nocardioides sp. JS614]
gi|119535380|gb|ABL79997.1| Substrate-binding region of ABC-type glycine betaine transport
system [Nocardioides sp. JS614]
Length = 318
Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 38/314 (12%), Positives = 88/314 (28%), Gaps = 45/314 (14%)
Query: 2 YKILAVCLFLTTFSISYARDADS----------------CTPVRFADTGWTDIAATTAMT 45
+ LA L + + ++ A D PVR A +T+ A AM
Sbjct: 6 RRSLAAALAVGSLFLATACADDDLDSKQADDATPSATTDQGPVRIAGQSFTEAAIVAAMY 65
Query: 46 SVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAE 105
+L GY T++KL+ + + +D+ Y + A + A
Sbjct: 66 DELLTAA-GYDTDVKLVDTRDAYMATFPDSVDVVPEYVGGIVNFLNARENGAKAEPFTAG 124
Query: 106 NLQGAKY---------MLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPG-------- 148
+ +A+ D A ++ + + G G
Sbjct: 125 DGAELVDQGKSLLDAAGIALLDQSAATDTNAFFVTKDFSESEGVTKLSDLEGRSVKLAAA 184
Query: 149 ---NEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINS 205
+++ + + + + + +
Sbjct: 185 PDCEGRLDCEGGLVDQYGID----VTEVLPLGYASNDTYQSVISGESELGETSTTDGTLE 240
Query: 206 DLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLIL 263
+ L + ++ V S +L++ P+I+ +L + + E+ +
Sbjct: 241 SQGLVVLED--DKQIQPAQNLVPAVSSAFLEQHPDIADVLNGLMAALTTEKLTELNGAVA 298
Query: 264 NNKQDRQFVGRTML 277
++ + V L
Sbjct: 299 VDRDKPEDVAHQFL 312
>gi|307138789|ref|ZP_07498145.1| putative transporter subunit: periplasmic-binding component of ABC
superfamily protein [Escherichia coli H736]
gi|331642754|ref|ZP_08343889.1| putative transport system permease protein [Escherichia coli H736]
gi|331039552|gb|EGI11772.1| putative transport system permease protein [Escherichia coli H736]
Length = 305
Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 40/302 (13%), Positives = 85/302 (28%), Gaps = 31/302 (10%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
K+ A L L A PV+ T+ A + +LE G T ++
Sbjct: 5 KVWAGSLVLLAAVSLPLHAAS---PVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQ 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKL 102
L PV ++ + +DI+ Y F +
Sbjct: 61 LGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDAAWKNAQQGYEKVKKLDAEQNKLIW 120
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMIN 160
+ + +AV + + K+ E +
Sbjct: 121 LTPAPANNTWTIAVRQDVAEKNKLTSLADLSRYLKEGGTFKLAASAEFIERADALPAFEK 180
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + + +++ + L + L + +
Sbjct: 181 AYGFKLGQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSYPQGV- 239
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ VVR L + P +++ L+ + ++ I D + V L
Sbjct: 240 -QPIYAPAPVVRESVLKEYPQMAQWLQPVFASLDAKTLQQLNASIAVEGLDAKKVAADYL 298
Query: 278 RT 279
+
Sbjct: 299 KQ 300
>gi|306838860|ref|ZP_07471690.1| Substrate-binding region of ABC-type glycine betaine transport
system [Brucella sp. NF 2653]
gi|306406058|gb|EFM62307.1| Substrate-binding region of ABC-type glycine betaine transport
system [Brucella sp. NF 2653]
Length = 309
Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 51/301 (16%), Positives = 93/301 (30%), Gaps = 32/301 (10%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLL 62
A+ LF+ S +A V + T+ + +L G KT I+L
Sbjct: 12 FALALFVGAIQFSSLAEAQ----VVVSSKIDTEGGVLGNIILTVLNAN-GIKTTDRIQLG 66
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPS------------------LEKFIAPYLEEGSIKLVA 104
A PV +++ IDI+ Y + E + I +A
Sbjct: 67 ATPVVRKAITAGEIDIYPEYTGNAAFFFNKADDPLWKDPAKAYETAKKLDYDANKIVWLA 126
Query: 105 ENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN-NN 162
+ + +AV + S D KY G + + L
Sbjct: 127 PSPANNTWGIAVRKDVADENKLASLSDFGKYVAGGGKVVLAASSEFVNSAAALPAFQTAY 186
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
F+LK +LI S + + I N + + + + L +
Sbjct: 187 GFTLKPDQLITLSGGDTAATIAAAANQTNGANAAMVYGTDGGIAPSGLVVLED--DKHVQ 244
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++R + L K P I LLK + K + ++ + + + V L+
Sbjct: 245 PVYQPAPIIREEVLKKNPKIEELLKPVFEKLDLTTLQDLNGRVQLGGEPAKAVAEDFLKK 304
Query: 280 H 280
+
Sbjct: 305 N 305
>gi|225574557|ref|ZP_03783167.1| hypothetical protein RUMHYD_02634 [Blautia hydrogenotrophica DSM
10507]
gi|225038244|gb|EEG48490.1| hypothetical protein RUMHYD_02634 [Blautia hydrogenotrophica DSM
10507]
Length = 180
Score = 97.2 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 22/187 (11%), Positives = 50/187 (26%), Gaps = 11/187 (5%)
Query: 96 EEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRI 155
++ + ++++ Y LAV + +I +
Sbjct: 1 DKYDLDVLSQMSFNNTYTLAVKPELAEKYGLKTMSDLQSLN-GQLRISPTLEFMNRGDGL 59
Query: 156 LDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG 215
+ + I S + V ++ + + L
Sbjct: 60 PGLKETYGLTFAEETGINGSPR------YTALMSGESDVIDAFLTDGLLKKFGLTVLEDD 113
Query: 216 EEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVG 273
+ VVR + L+K P I + + + + EM I ++D + V
Sbjct: 114 KNFF--PPYYAIPVVRGEILEKYPEIQDVFEKLAPLLTDESMQEMNYQIDELQKDEKDVA 171
Query: 274 RTMLRTH 280
L +
Sbjct: 172 AAFLEKN 178
>gi|265983399|ref|ZP_06096134.1| ABC transporter [Brucella sp. 83/13]
gi|264661991|gb|EEZ32252.1| ABC transporter [Brucella sp. 83/13]
Length = 312
Score = 97.2 bits (240), Expect = 3e-18, Method: Composition-based stats.
Identities = 51/301 (16%), Positives = 93/301 (30%), Gaps = 32/301 (10%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLL 62
A+ LF+ S +A V + T+ + +L G KT I+L
Sbjct: 15 FALALFVGAIQFSSLAEAQ----VVVSSKIDTEGGVLGNIILTVLNAN-GIKTTDRIQLG 69
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPS------------------LEKFIAPYLEEGSIKLVA 104
A PV +++ IDI+ Y + E + I +A
Sbjct: 70 ATPVVRKAITAGEIDIYPEYTGNAAFFFNKADDPLWKDPAKAYETAKKLDYDANKIVWLA 129
Query: 105 ENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN-NN 162
+ + +AV + S D KY G + + L
Sbjct: 130 PSPANNTWGIAVRKDVADENKLASLSDFGKYVAGGGKVVLAASSEFVNSAAALPAFQTAY 189
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
F+LK +LI S + + I N + + + + L +
Sbjct: 190 GFTLKPDQLITLSGGDTAATIAAAANQTNGANAAMVYGTDGGIAPSGLVVLED--DKHVQ 247
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++R + L K P I LLK + K + ++ + + + V L+
Sbjct: 248 PVYQPAPIIREEVLKKNPKIEELLKPVFEKLDLTTLQDLNGRVQLGGEPAKAVAEDFLKK 307
Query: 280 H 280
+
Sbjct: 308 N 308
>gi|332343908|gb|AEE57242.1| substrate binding domain of ABC-type glycine betaine transport
protein [Escherichia coli UMNK88]
Length = 293
Score = 97.2 bits (240), Expect = 3e-18, Method: Composition-based stats.
Identities = 37/301 (12%), Positives = 85/301 (28%), Gaps = 33/301 (10%)
Query: 14 FSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSL 71
+ + + +PV+ T+ A + +LE G T ++L PV ++
Sbjct: 1 MLAAVSLPLQAASPVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQLGTTPVVRGAI 59
Query: 72 KNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKLVAENLQGAKYM 113
+ +DI+ Y F + + +
Sbjct: 60 TSGELDIYPEYTGNGAFFFKDENDAAWKNAQQGYEKVKKLDSEHNKLIWLTPAPANNTWT 119
Query: 114 LAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
+AV + + K+ E + F L +L
Sbjct: 120 IAVRQDVAEKNKLTSLADLSRYLQEGGTFKLAASAEFIERADALPAFEKAYGFKLGQDQL 179
Query: 172 IEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
+ + + I+ + + +++ + L + L + + + VV
Sbjct: 180 LSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV--QPIYAPAPVV 237
Query: 231 RSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
R L + P +++ L+ + ++ I D + V L+ K W
Sbjct: 238 RESVLREYPQMAQWLQPVFASLDAKTLQQLNASIAVEGLDAKKVAADYLKQ-----KGWT 292
Query: 289 I 289
Sbjct: 293 K 293
>gi|37520459|ref|NP_923836.1| ABC transporter permease [Gloeobacter violaceus PCC 7421]
gi|35211453|dbj|BAC88831.1| glr0890 [Gloeobacter violaceus PCC 7421]
Length = 496
Score = 97.2 bits (240), Expect = 3e-18, Method: Composition-based stats.
Identities = 29/285 (10%), Positives = 65/285 (22%), Gaps = 26/285 (9%)
Query: 9 LFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL--AVPV 66
L+L F + A A + + +T+ + E + + +
Sbjct: 4 LWLVVFVLCTAWAAGAEERLVVGSKRFTESYILGELVRQTAERAGEAQVTHRQGLGNTGI 63
Query: 67 TFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEG-----------SIKLVAENLQGAKYMLA 115
F +L + ID++ Y ++ + + + Y LA
Sbjct: 64 LFAALTSGEIDLYPEYTGTIDKEVLKNRTPADLMTLQKQLAPLGLGVGVPLGFNDTYALA 123
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
+ K EL +Q L+ + + + L
Sbjct: 124 MGADQAEKLGIRTLSDLKRHPELRY---------GLSQEFLNRADGWPGVRRVYGLAAQP 174
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYL 235
+ + + L + F + R D
Sbjct: 175 RALEHGLAYEAIAAGQIDLIDIYSTDAKIDRYRLRVLTD--DKRFFPAYDAVLLYRLDLP 232
Query: 236 DKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
+ P + + K ++ + LR
Sbjct: 233 KRLPKTWAAIGQLEGKLDEKQMVQLNADAELRGLTFAEIAGRFLR 277
>gi|297157953|gb|ADI07665.1| ABC transporter substrate-binding protein [Streptomyces
bingchenggensis BCW-1]
Length = 330
Score = 97.2 bits (240), Expect = 3e-18, Method: Composition-based stats.
Identities = 30/271 (11%), Positives = 70/271 (25%), Gaps = 28/271 (10%)
Query: 28 VRFADTGWTDIAATTAMTSVILEEILGYK--TNIKLLAVPVTFRSLKNKGIDIFMGYWYP 85
+ +T+ + + L G K L + + +L+ ID+ Y
Sbjct: 65 LVIGTANFTENQILGYLYAEAL-RGAGVKASVRPNLGSREIVIPALQQGDIDLLPEYQGN 123
Query: 86 --------------SLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDI 131
+ +++ + K + AV + +
Sbjct: 124 LLLHFDDTAKQTEAGDLQNALAVALPAALEALPYAAAEDKDVFAVTKETADKH--GLRSL 181
Query: 132 AKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI 191
A K G ++G ++ L + + + ++ +
Sbjct: 182 ADLHKLDGKLVFGGPAEDKKRVVGLVGLK-DVYGTTFKEFKSLDASGPL--VKGALKKGD 238
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--K 249
V + P L + V+RS + R L +
Sbjct: 239 VDVANLFSTDPDIQANGWIMLADP--KQLIPAQHIVPVIRS--AKADAKVRRALARLGGA 294
Query: 250 FSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ ++ KL+ K+D V + +
Sbjct: 295 LTTQELAKLNKLVDVEKKDPDEVAADWAKRN 325
>gi|302551751|ref|ZP_07304093.1| ABC transporter substrate-binding protein [Streptomyces
viridochromogenes DSM 40736]
gi|302469369|gb|EFL32462.1| ABC transporter substrate-binding protein [Streptomyces
viridochromogenes DSM 40736]
Length = 321
Score = 97.2 bits (240), Expect = 3e-18, Method: Composition-based stats.
Identities = 25/281 (8%), Positives = 69/281 (24%), Gaps = 30/281 (10%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVT--FRSLKNKGID 77
+ + +T+ ++ + E G + +++ D
Sbjct: 39 GEPLKGAHLTVTSKSFTEQLILGSIMGIAFEAA-GADVIDRTGIQGSIGSREAVRKGDAD 97
Query: 78 IFMGYWYPSLEKFI----------------APYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
Y + ++ + + + Y LA+N
Sbjct: 98 AGYEYTGTAWITYLGHSKPVVDPREQWEAVREEDAANGLTWLPPSSLDNTYALAMNQENA 157
Query: 122 ALG-IKSYQDIAKYKKELGAKIYGIEP--GNEGNQRILDMINNNKFSLKGFRLIEASELA 178
K+ ++AK K + + M L +
Sbjct: 158 KKYGTKTMSEVAKLAKSDPGAVRLCVEVEFANRADGLPGMQKAYGMDLPARNI----TSM 213
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+ I + +N+ + ++ + ++ + L +
Sbjct: 214 NTGIIYTQTAKGRCTYGEVFTTDGRIKSMNLVVMDDDKKFF--PNYNAAPMIHTKTLKEW 271
Query: 239 PNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
P I+ +L + + L E+ + +D V +
Sbjct: 272 PAIADVLNPVTARLNNTLAQELNAKVDVEGEDPHQVALDWM 312
>gi|329940219|ref|ZP_08289501.1| secreted substrate-binding protein [Streptomyces griseoaurantiacus
M045]
gi|329301045|gb|EGG44941.1| secreted substrate-binding protein [Streptomyces griseoaurantiacus
M045]
Length = 351
Score = 96.8 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 38/277 (13%), Positives = 80/277 (28%), Gaps = 23/277 (8%)
Query: 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGI 76
A + V + + + L+ G K + K + T+ LKN I
Sbjct: 76 AGEKSGGDTVVVGSNNFAESILIADIYGEALKAK-GIKVSYKPNIGSRETTYGLLKNGSI 134
Query: 77 DIFMGYWYP--------------SLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF- 121
+ Y + + ++L+ K + +N
Sbjct: 135 TVLPEYNGALLAYLDAKATPKTVAETTAAINAKLDKKLELLEPAAAQDKDSVTINAATAK 194
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
G+ IA K + G P + Q+ L + + + ++ +
Sbjct: 195 EHGLTDKSTIADLKDIAPKLVIGGSPEFQTRQQGLKGLKS-VYGVEFKSFKALDAGGPLT 253
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNI 241
Q + N + P + L E + GF +V +V + K
Sbjct: 254 Q--AALKKNTVQAADLFTTDPTITKEKFVVLQDPENLFGF--ENVQPLVYKSSVSKEAAA 309
Query: 242 SRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLR 278
+ + K A ++ + +D V ++ L+
Sbjct: 310 ALNAVSAKLDTAALLDLDAQVQLENKDPLDVAKSWLK 346
>gi|83945649|ref|ZP_00957995.1| Substrate-binding region and inner membrane component of
ABC-typeglycine betaine transport system [Oceanicaulis
alexandrii HTCC2633]
gi|83851015|gb|EAP88874.1| Substrate-binding region and inner membrane component of
ABC-typeglycine betaine transport system [Oceanicaulis
alexandrii HTCC2633]
Length = 517
Score = 96.8 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 36/302 (11%), Positives = 70/302 (23%), Gaps = 43/302 (14%)
Query: 4 ILAVCLFLTTFSISYARDAD-------------SCTPVRFADTGWTDIAATTAMTSVILE 50
ILA L L + + PV +T+ + LE
Sbjct: 220 ILAPVLVLGGAVMVNRASGEGSVGRQTQVDAGFDDGPVIIGAKSFTEQYILAEVIERRLE 279
Query: 51 EILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPY---------------- 94
+ L V F +L++ ID+++ Y +
Sbjct: 280 GAGARTERRENLGSTVVFDALRSGEIDVYVDYTGTLWANVMGEEAPIPRHQMYAAVSSWL 339
Query: 95 LEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQR 154
E I + Y AV + L + G +P
Sbjct: 340 YENAGIVALGRLGFENAYGFAVTADFAESEAVTSI---ADLVALPSLSVGADPEFFARTE 396
Query: 155 ILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPG 214
S + + RN V ++ ++ L
Sbjct: 397 WERTRAFYGLSGIE------QRSMDSAFMYDAVRNGAVDVITAYTSDGRVLAYDLVILDD 450
Query: 215 GEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFV 272
++ ++ K P + R L + L E ++ ++
Sbjct: 451 PRGAL--PPYDAVILLSAEAAQK-PAVGRALAPLIGAIDADLMREANAVVEVERRSVSEA 507
Query: 273 GR 274
+
Sbjct: 508 AQ 509
>gi|149011276|ref|ZP_01832523.1| choline transporter [Streptococcus pneumoniae SP19-BS75]
gi|147764266|gb|EDK71197.1| choline transporter [Streptococcus pneumoniae SP19-BS75]
Length = 199
Score = 96.8 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 21/187 (11%), Positives = 61/187 (32%), Gaps = 14/187 (7%)
Query: 96 EEGSIKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQR 154
++ + + Y +AV G+K+ D+ K + +L A N+
Sbjct: 18 KQDHLAYLKPMSYQNTYAVAVPKKIAQEYGLKTISDLKKVEGQLKAGFTL--EFNDREDG 75
Query: 155 ILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPG 214
+ + +L L + + ++ + ++ ++ L
Sbjct: 76 NKGLQSMYGLNLNVSTLEP-------ALRYQAIQSGEIQITDAYSTDAELERYDLQVLED 128
Query: 215 GEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFV 272
+ F +++ L K P + +L + K + + +++ + + + V
Sbjct: 129 --DKQLFPPYQGAPLMKEALLKKHPELETVLNKLAGKITESQMSQLNYQVGVEGKPAEQV 186
Query: 273 GRTMLRT 279
+ L+
Sbjct: 187 AKEFLQE 193
>gi|91200378|emb|CAJ73424.1| similar to membrane protein component of ABC transporter for
proline or glycine betaine [Candidatus Kuenenia
stuttgartiensis]
Length = 505
Score = 96.8 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 37/297 (12%), Positives = 79/297 (26%), Gaps = 28/297 (9%)
Query: 1 MYK---ILAVCLFLTTFSISYARDADSCTP-VRFADTGWTDIAATTAMTSVILEEILGYK 56
M ++ + L F+ + A S TP ++ +T+ + + +L+
Sbjct: 1 MKTYFFVIYLFLCNAVFAYLFPLTAYSSTPKIKIGSKKFTESVILGEIVNHLLKSTGEQP 60
Query: 57 TNIKL-LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIA-----------PYLEEGSIKLVA 104
++ V + +L IDI+ Y E+ +A L + IK+
Sbjct: 61 IYLRELGGTRVLWNALLKGEIDIYPEYTGTISEEILAGEEVHSEEEIRQALIKRGIKMTD 120
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKF 164
Y + + + + +L + + +
Sbjct: 121 ALGFNNTYAIGMKEEVAEKLKIRKISDLQRHPDLKFGF--GNEFMDRGDGWPILRRHYNL 178
Query: 165 SLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEA 224
+ R I ++ N+ L
Sbjct: 179 PQ------QNVRGLDHDLAYRGLEKGIIQAIDTYSTDAKIRYYNLRLLEDDMNHF--PAY 230
Query: 225 SVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+ + RSD ++ P+ +LK I K S +M + L
Sbjct: 231 NAVILYRSDLEERAPHAVTVLKKIENKISRLEMVKMNFRANMEMIPENRIAADFLSE 287
>gi|300703220|ref|YP_003744822.1| glycine betaine ABC transporter substrate-binding inner membrane
component [Ralstonia solanacearum CFBP2957]
gi|299070883|emb|CBJ42185.1| putative ABC-type glycine betaine transport system,
Substrate-binding inner membrane component [Ralstonia
solanacearum CFBP2957]
Length = 520
Score = 96.8 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 34/308 (11%), Positives = 73/308 (23%), Gaps = 34/308 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+ +IL V + L S A+ P+R +T+ + + +
Sbjct: 12 LRRIL-VWMALGWLSCGTLAWAEP--PLRIGSKRFTESYVLGEVLTQTAAPHGPAEHVPG 68
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQ------------ 108
L + F +LK+ ID++ Y + + + + L
Sbjct: 69 LGNTAIVFAALKSGNIDLYPDYLGTIAAEILHLPPAQTANPDQVALLADVNRALAPLGLG 128
Query: 109 -----GAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK 163
G + A+ + +A ++ + +
Sbjct: 129 AGVPLGFEDTYALAMREADAERSGLRTLADLAAHPALRLGLSHEFLGRADGWPALAARYR 188
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+ L R V + ++ L F
Sbjct: 189 LPQRPIGLDHGV-------AYDALRAGQTDVIDIYSTDARIRREHLRVLEDS--AHVFPR 239
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH- 280
+ R D + P + + + + M + Q V L H
Sbjct: 240 YDAVVLYRLDVPARHPAQWQAISALAGRIHRDEMVAMNAAVELEGQSFARVASQFLTGHG 299
Query: 281 --PDLLKN 286
P +
Sbjct: 300 TPPARVDA 307
>gi|170767602|ref|ZP_02902055.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Escherichia albertii TW07627]
gi|170123936|gb|EDS92867.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Escherichia albertii TW07627]
Length = 305
Score = 96.8 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 39/301 (12%), Positives = 86/301 (28%), Gaps = 30/301 (9%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKL 61
L + ++S A S PV+ T+ A + +LE G T ++L
Sbjct: 5 TLWAGSLVMLAAVSLPLQAAS--PVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQL 61
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKLV 103
PV ++ + +DI+ Y F + +
Sbjct: 62 GTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDAAWKNAGQGYEKVKKLDAEQNKLIWL 121
Query: 104 AENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMINN 161
+ +AV + + K+ E +
Sbjct: 122 TPAPANNTWTIAVRQELAEKNKLASLADLSRYLKEGGTFKLAASAEFIERADALPAFEKA 181
Query: 162 NKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISG 220
F L +L+ + + I+ + + +++ + L + L + +
Sbjct: 182 YGFKLGQDQLLSLAGGDTAVTIKAAAQQISGVNAAMAYGTDGPVAALGLQTLSDPQGV-- 239
Query: 221 FGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
+ VVR L + P +++ L+ + ++ I D + V L+
Sbjct: 240 QPIYAPAPVVRESVLKEYPQMAQWLQPVFASLDEKTLQKLNASIAVEGLDAKKVAADYLK 299
Query: 279 T 279
Sbjct: 300 Q 300
>gi|284034632|ref|YP_003384563.1| Substrate-binding region of ABC-type glycine betaine transport
system [Kribbella flavida DSM 17836]
gi|283813925|gb|ADB35764.1| Substrate-binding region of ABC-type glycine betaine transport
system [Kribbella flavida DSM 17836]
Length = 310
Score = 96.8 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 37/277 (13%), Positives = 81/277 (29%), Gaps = 26/277 (9%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGIDIF 79
D + + + + + LE G K + + A + ++++K +D+
Sbjct: 41 PDKVDSLTVGSANFAESQVLAEIYAQALEAK-GIKVNRKLNIGARELYMAAIQDKSVDLL 99
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
Y +L F E + + L V + A + + K+
Sbjct: 100 PEYTGATLVYFKKDATENEAEAVYKALPDALPDGLEVLNKSEAADEDAIVVTQETAKKYS 159
Query: 140 AKIY-------------GIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRD 186
K G + M + S +
Sbjct: 160 LKSIGDLKAVSKDMVAGGGPEFKTRTAGLAGMKDKYGVE--FKEFKTLDAGGPLSL--KA 215
Query: 187 QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLK 246
++N V + D N+ L E I ++ ++R+D K P ++ L
Sbjct: 216 LKDNTIQVTQFFTTQSAIKDNNLVVLEDPEHIHL--PNNIVPLIRTD--HKSPEVADTLN 271
Query: 247 NI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTHP 281
+ K + + +++K + V + L +P
Sbjct: 272 AVQAKLTTSALTDLVKRAEGGSESAAAVAKDWLSQNP 308
>gi|254718434|ref|ZP_05180245.1| Substrate-binding region of ABC-type glycine betaine transport
system [Brucella sp. 83/13]
Length = 303
Score = 96.8 bits (239), Expect = 4e-18, Method: Composition-based stats.
Identities = 52/306 (16%), Positives = 94/306 (30%), Gaps = 33/306 (10%)
Query: 1 MY-KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN- 58
M A+ LF+ S +A V + T+ + +L G KT
Sbjct: 1 MKGSAFALALFVGAIQFSSLAEAQ----VVVSSKIDTEGGVLGNIILTVLNAN-GIKTTD 55
Query: 59 -IKLLAVPVTFRSLKNKGIDIFMGYWYPS------------------LEKFIAPYLEEGS 99
I+L A PV +++ IDI+ Y + E +
Sbjct: 56 RIQLGATPVVRKAITAGEIDIYPEYTGNAAFFFNKADDPLWKDPAKAYETAKKLDYDANK 115
Query: 100 IKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
I +A + + +AV + S D KY G + + L
Sbjct: 116 IVWLAPSPANNTWGIAVRKDVADENKLASLSDFGKYVAGGGKVVLAASSEFVNSAAALPA 175
Query: 159 IN-NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGE 216
F+LK +LI S + + I N + + + + L
Sbjct: 176 FQTAYGFTLKPDQLITLSGGDTAATIAAAANQTNGANAAMVYGTDGGIAPSGLVVLED-- 233
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ ++R + L K P I LLK + K + ++ + + + V
Sbjct: 234 DKHVQPVYQPAPIIREEVLKKNPKIEELLKPVFEKLDLTTLQDLNGRVQLGGEPAKAVAE 293
Query: 275 TMLRTH 280
L+ +
Sbjct: 294 DFLKKN 299
>gi|308176861|ref|YP_003916267.1| osmoprotectant (glycine betaine/carnitine/choline/L-proline) ABC
transporter substrate-binding protein [Arthrobacter
arilaitensis Re117]
gi|307744324|emb|CBT75296.1| osmoprotectant (glycine betaine/carnitine/choline/L-proline) ABC
transporter, substrate-binding protein [Arthrobacter
arilaitensis Re117]
Length = 300
Score = 96.8 bits (239), Expect = 4e-18, Method: Composition-based stats.
Identities = 37/299 (12%), Positives = 81/299 (27%), Gaps = 24/299 (8%)
Query: 1 MYKILAVCLFLTTFSISYARDADSC-------------TPVRFADTGWTDIAATTAMTSV 47
+ KIL + + A + S + + + +
Sbjct: 3 LKKILPATALVLASGLVLAGCSSSDPLAGGSSSGDSGNETIVVGSQAYYSNEIVAEIYAQ 62
Query: 48 ILEEILGYKTNIKL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAE 105
LE+ G + K L++ ID+ Y L+ + ++ +E
Sbjct: 63 ALEDA-GMEVERKFNIGQRDAYMPQLEDGSIDVSPEYTGNLLQFYKKDTEARSGDEVYSE 121
Query: 106 NLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYG--IEPGNEGNQRILDMINNNK 163
+ LAV + A SY K+ +E + G + +
Sbjct: 122 LEKALPDSLAVLEAAQASDQDSYTVTKKFAEENKVTSIEDLADVGKKLTVGGPPELEQRP 181
Query: 164 FSLKGFRLIEASELASFSQIRRDQRN---NIPAVFLSWEPHPINSDLNIHYLPGGEEISG 220
+ KG + + + V + P + L + +
Sbjct: 182 YGPKGLESTYGVKAGFSATGDTTVEDLVAGTVNVANVFTADPRIKTEQLVVLEDPKSLFL 241
Query: 221 FGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++V +V ++ +K + + K S E+ +Q + L
Sbjct: 242 --ASNVVPLVSAEQSEKLAAVLDPVSQ-KLSAQTLVELNVQSTVGQQSAADIASAWLEA 297
>gi|300744243|ref|ZP_07073262.1| glycine betaine/choline-binding protein of an ABC-type transport
system [Rothia dentocariosa M567]
gi|300379968|gb|EFJ76532.1| glycine betaine/choline-binding protein of an ABC-type transport
system [Rothia dentocariosa M567]
Length = 306
Score = 96.8 bits (239), Expect = 4e-18, Method: Composition-based stats.
Identities = 40/305 (13%), Positives = 84/305 (27%), Gaps = 37/305 (12%)
Query: 2 YKILAVCLFLTTFSISYARD-------ADSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
+ L V L T + A + + + + S L + G
Sbjct: 8 RQTLGVVGALGTLGVLSACGLSGENVFGGEHDGIIVGSAAFAESQILAEIYSQALNKN-G 66
Query: 55 YK--TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL----- 107
+K T + + A +L + ID+ Y L + +++
Sbjct: 67 FKSSTQLGIGAREAYLGALTSGAIDVIPEYSGNLLLYLDENSTAQTKQEILQALGGVLQD 126
Query: 108 ---------QGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILD 157
K L V +++ D+AK EL KI E I
Sbjct: 127 NLKALDASQAENKDTLVVTQQTAQKYNLRTLDDLAKVCTEL--KIGAAPEFAERAYGIPG 184
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
+ + F + + + ++N V + P + N L +
Sbjct: 185 LKDKYGCVPAEFV---SLADGGGALTVKALQDNTVQVVDLYSTTPAITQNNFVMLEDPKN 241
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQ-DRQFVGR 274
V ++ + + + + +L I + + + +K+ D
Sbjct: 242 --MIPAQQVLPIINTKRVPE--DAQAVLNRISAVLTTDDLRSLNDEVSGDKKLDPSTAAA 297
Query: 275 TMLRT 279
L+
Sbjct: 298 NWLKD 302
>gi|296394993|ref|YP_003659877.1| glycine betaine ABC transporter substrate-binding protein
[Segniliparus rotundus DSM 44985]
gi|296182140|gb|ADG99046.1| Substrate-binding region of ABC-type glycine betaine transport
system [Segniliparus rotundus DSM 44985]
Length = 314
Score = 96.8 bits (239), Expect = 4e-18, Method: Composition-based stats.
Identities = 33/298 (11%), Positives = 81/298 (27%), Gaps = 29/298 (9%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKL 61
+L+ C + S A + + + + L G+ +
Sbjct: 16 LLSACGTSSDPFSSGAETDSDPSTITVGSAASPESEVIADIYIQALRAN-GFHAGGKQGV 74
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKF---------------IAPYLEEGSIKLVAEN 106
+L + I + Y L + L +
Sbjct: 75 GQREGYIPALSSGEISVIPEYTGNLLRYVNKAAKAVTAEQIKIELDQALVSVKLVAYTPA 134
Query: 107 LQGAKYMLAVNDVGFAL-GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFS 165
+ V G+ S D+A + E G + ++ + + +
Sbjct: 135 PASNTDSITVTKKLAQSWGLSSIADLAAHVAEFEVA--GNAEFQQRHEGLAGLKDVYGID 192
Query: 166 LKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEAS 225
+ + ++ + + I R N + P ++ ++ L + + +
Sbjct: 193 VPADHFMAINDSSGPATIE-ALRKNQAQGADVYTTTPALAEGDLLVLDDPKGLF--PPNN 249
Query: 226 VYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNK-QDRQFVGRTMLRTH 280
V VV P + R+L + + + + + I Q+ + L+ H
Sbjct: 250 VVPVVS--LRKDSPKLRRVLDAVSAQLTTQDLTMLNRAISGQGEQEPEDAAAAWLKAH 305
>gi|261823746|ref|YP_003261852.1| substrate-binding region of ABC-type glycine betaine transporter
[Pectobacterium wasabiae WPP163]
gi|261607759|gb|ACX90245.1| Substrate-binding region of ABC-type glycine betaine transport
system [Pectobacterium wasabiae WPP163]
Length = 293
Score = 96.8 bits (239), Expect = 4e-18, Method: Composition-based stats.
Identities = 38/298 (12%), Positives = 84/298 (28%), Gaps = 29/298 (9%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILE-EILGYKTNIK 60
+ + S AD+ V + + + + LE + + + +
Sbjct: 4 KRYFTLFSAALLSVASSVWAADAGQKVIIGSADFPENQLLATIYAGALEAQKIPVEKKLN 63
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEE--------------GSIKLVAEN 106
+ + V +L + I + Y L A +K++ +
Sbjct: 64 IGSREVYIPALLDGSITVIPEYSGALLSYLDAKSEAHSSEDVAKALATKLPEKVKMLNTS 123
Query: 107 LQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGN-EGNQRILDMINNNKFS 165
+L V + I K G + G ++ + + + +
Sbjct: 124 RAQNSDVLVVTKKTADKYKL--KTIDDLKPVAGQLVLGGPAEWKTRHEGVPGLRDVYGLN 181
Query: 166 LKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEAS 225
K F++++ + + + +NN V P ++ L F +
Sbjct: 182 FKTFKVLDVAGPLTLT----ALKNNQIQVADLTSTTPEIKKDHLVALEDP--KHLFAAQN 235
Query: 226 VYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTHP 281
+ +V S L P I L I + + M + + V L H
Sbjct: 236 IVPIVASSTL--NPTIESTLNKISAQLTTEDLIAMNEQLA-EFASIDDVAHQWLVKHQ 290
>gi|207725141|ref|YP_002255538.1| abc type transporter : periplasmic glycine betaine /
choline-binding lipoprotein and permease components
[Ralstonia solanacearum MolK2]
gi|206590373|emb|CAQ37334.1| abc type transporter : periplasmic glycine betaine /
choline-binding lipoprotein and permease components
[Ralstonia solanacearum MolK2]
Length = 520
Score = 96.4 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 33/299 (11%), Positives = 72/299 (24%), Gaps = 31/299 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+ +ILA + L + A+ P+R +T+ + + +
Sbjct: 12 LRRILAW-MALGWLACGTLTWAEP--PLRIGSKRFTESYVLGEVLTQTAAPHGPAEHVPG 68
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQ------------ 108
L + F +LK+ ID++ Y + + + + A L
Sbjct: 69 LGNTAIVFAALKSGNIDLYPEYLGTIAAEILHLPPAQAADPDQAALLADVNRALAPLGLG 128
Query: 109 -----GAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK 163
G + A+ + +A ++ + +
Sbjct: 129 AGVPLGFEDTYALAMREADAERSGLRTLADLAAHPALRLGLSHEFLGRADGWPALAARYR 188
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+ L R V + ++ L F
Sbjct: 189 LPQQPIGLDHGV-------AYDALRAGQTDVIDIYSTDARIRREHLRVLEDS--AHVFPR 239
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ R D + P + + + + M + Q V L H
Sbjct: 240 YDAVVLYRLDVPARHPAQWQAISALAGRIHRDDMVAMNAAVELEGQSFARVASQFLAGH 298
>gi|171316822|ref|ZP_02906032.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia ambifaria MEX-5]
gi|171097992|gb|EDT42809.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia ambifaria MEX-5]
Length = 307
Score = 96.4 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 38/277 (13%), Positives = 82/277 (29%), Gaps = 28/277 (10%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGIDIFMGYWY 84
PV + T+ + + +L+ G I L P+ ++L + IDI+ Y
Sbjct: 28 PVVVSSKIDTEGNLLGNVIAQVLKAH-GIPVTEKIALGTTPIVRKALTSGEIDIYPEYTG 86
Query: 85 PSLEKFIAPYLEEGS------------------IKLVAENLQGAKYMLAVNDVGFA-LGI 125
+ F + + + +AV +
Sbjct: 87 NAAFFFNKADDPAWKNASQGYDAAKKLDYAANHLVWLTPAPANNTWGVAVLAPVAQSQHL 146
Query: 126 KSYQDIAKYKK-ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
K++ D K+ K+ + F LK +L+ S + + I+
Sbjct: 147 KTFSDFGKWIAGGGKVKLAASAEFVNSASALPSFEKAYGFKLKPDQLVVLSGGDTAATIK 206
Query: 185 RDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
+ + + + + + L + + V+R L P I+
Sbjct: 207 AAANQTDGVSAAMVYGTDGGIASSGLVVLDD--DKHVQPVYAPTPVIREAVLKAHPQIAD 264
Query: 244 LLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
LK + + + I N + V ++ L+
Sbjct: 265 YLKPVFASLDLKTLQTLNARIQINGEPAAGVAKSYLK 301
>gi|254254528|ref|ZP_04947845.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia dolosa AUO158]
gi|124899173|gb|EAY71016.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia dolosa AUO158]
Length = 307
Score = 96.4 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 39/276 (14%), Positives = 83/276 (30%), Gaps = 26/276 (9%)
Query: 27 PVRFADTGWTDIAATTAMTSVILE-EILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYP 85
PV + T+ + + +L+ + I L A P+ ++L + IDI+ Y
Sbjct: 28 PVVVSSKIDTEGNLLGNLIAQVLKSHGIPVTEKIALGATPIVRKALTSGEIDIYPEYTGN 87
Query: 86 SLEKFIAPYLEEGS------------------IKLVAENLQGAKYMLAVNDVGFA-LGIK 126
+ F + +A + +AV +K
Sbjct: 88 AAFFFNKADDPVWKNASQGYDTAKKLDYAANHLVWLAPAPANNTWGVAVLSPVAQSQHLK 147
Query: 127 SYQDIAKYKK-ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
++ D K+ K+ + F LK +L+ S + + I+
Sbjct: 148 TFSDFGKWVAGGGKVKLAASAEFVNSTSALPSFEKAYGFKLKPDQLVVLSGGDTAATIKA 207
Query: 186 DQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
+ + + + + L + + V+R L P I+
Sbjct: 208 AANQTDGVNAAMVYGTDGGIASSGLTVLDD--DKHVQPVYAPAPVIREAVLKAHPQIADY 265
Query: 245 LKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
LK + + + I N + V ++ L+
Sbjct: 266 LKPVFASLDLKTLQMLNARIQINGEPAAGVAKSYLK 301
>gi|325002032|ref|ZP_08123144.1| glycine/betaine ABC transporter substrate-binding protein
[Pseudonocardia sp. P1]
Length = 313
Score = 96.4 bits (238), Expect = 5e-18, Method: Composition-based stats.
Identities = 39/308 (12%), Positives = 85/308 (27%), Gaps = 39/308 (12%)
Query: 5 LAVCLFLTTFSISYARDADSCTPV-----------RFADTGWTDIAATTAMTSVILEEIL 53
+ + + + S + + + +T LE +
Sbjct: 7 VTALTLAGCGGLDASGPSASGGSLAEAGNLEGVNYIVGGKNFDEQLVLCEITVAALESVG 66
Query: 54 G-YKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL----------------- 95
G L V ++L + I+I+ Y + F
Sbjct: 67 GNVTPRCNLGGTDVARQALLSGDINIYWDYTGTAWASFFKETQRIPDDNELYRLVSERDL 126
Query: 96 EEGSIKLVAENLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKKELGAKIYGIE-PGNEGNQ 153
+E + + + Y AVN + + D+A Y +E N +
Sbjct: 127 QENQLVWLDKANFNNTYAFAVNGEKAQQENLNTLSDMAAYINAGKPGKVCVETEYNSRDD 186
Query: 154 RILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLP 213
+ + F + G RL + I + + L + L + L
Sbjct: 187 GLRGLQQTYGFQVGGDRLDVLA----TGAIYQATTDGDCMFGLVFTTDGRIPGLGLKVLD 242
Query: 214 GGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQF 271
++ + +VR + ++ I +++ I + + + QD +
Sbjct: 243 DDKKYHV--TYNAAPIVREETYNQNQAIRQVMAPIAAALDYQTMLSLNGKVSSEGQDART 300
Query: 272 VGRTMLRT 279
V R L
Sbjct: 301 VARDWLTE 308
>gi|260598592|ref|YP_003211163.1| putative osmoprotectant uptake system substrate-binding protein
osmF [Cronobacter turicensis z3032]
gi|260217769|emb|CBA32205.1| Putative osmoprotectant uptake system substrate-binding protein
osmF [Cronobacter turicensis z3032]
Length = 302
Score = 96.4 bits (238), Expect = 5e-18, Method: Composition-based stats.
Identities = 35/279 (12%), Positives = 77/279 (27%), Gaps = 28/279 (10%)
Query: 26 TPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGIDIFMGYW 83
PV+ T+ A + +L + G KT I+L PV ++ + +DI+ Y
Sbjct: 22 EPVKVGSKIDTEGALLGNIILQVL-DSHGVKTVNKIQLGTTPVVRGAITSGELDIYPEYT 80
Query: 84 YPSLEKFIAPYLEEGS------------------IKLVAENLQGAKYMLAVNDVGFALGI 125
F + + + +AV
Sbjct: 81 GNGAFFFKQENDPAWKNAQQGYDKVKKLDAEQNKLIWLTPAAANNTWTIAVRQDLAQKNK 140
Query: 126 KSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
+ K+ E + +F L +++ + + I
Sbjct: 141 LTSLADLSRYLKDGGTFKLAASAEFIERPDALPAFEKAYQFKLNQDQMLSLAGGDTAVTI 200
Query: 184 RRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ + + +++ + L + L + + + VVR L P ++
Sbjct: 201 KAAAQQTSGVNAAMAYGTDGPVAALGLQTLTDPKGV--QPVYAPAPVVREAVLKAYPEMA 258
Query: 243 RLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+ + + E+ I D V L+
Sbjct: 259 QWFEPVFKALDEKTLQELNAQIAVEGLDAGKVASQWLKE 297
>gi|323168733|gb|EFZ54413.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Shigella sonnei 53G]
Length = 289
Score = 96.4 bits (238), Expect = 5e-18, Method: Composition-based stats.
Identities = 37/292 (12%), Positives = 83/292 (28%), Gaps = 33/292 (11%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGIDIFM 80
+ +PV+ T+ A + +LE G T ++L PV ++ + +DI+
Sbjct: 6 QAASPVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQLGTTPVVRGAITSGELDIYP 64
Query: 81 GYWYPSLEKFIAPYLEEGS------------------IKLVAENLQGAKYMLAVNDVGFA 122
Y F + + + +AV
Sbjct: 65 EYTGNGAFFFKDENDAAWKNAQQGYEKVKKLDAEQNKLIWLTPAPANNTWTIAVRQDVAE 124
Query: 123 LGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ + K+ E + F L +L+ + +
Sbjct: 125 KNKLTSLADLSRYLKEGGTFKLAASAEFIERADALPAFEKAYDFKLDQDQLLSLAGGDTA 184
Query: 181 SQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
I+ + + +++ + L + L + + + VVR L + P
Sbjct: 185 VTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPKGV--QPIYAPAPVVRESVLKEYP 242
Query: 240 NISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+++ L+ + ++ I D + V L+ K W
Sbjct: 243 QMAQWLQPVFASLDAKTLQQLNASIAVEGLDAKKVAADYLKQ-----KGWTK 289
>gi|167577772|ref|ZP_02370646.1| ABC transporter, periplasmic substrate-binding protein, putative
[Burkholderia thailandensis TXDOH]
Length = 268
Score = 96.4 bits (238), Expect = 5e-18, Method: Composition-based stats.
Identities = 43/253 (16%), Positives = 74/253 (29%), Gaps = 7/253 (2%)
Query: 28 VRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSL 87
V A + A + S L G + + F L++ D+ W P
Sbjct: 8 VTLATIDLSFHHAAAGIVSATL-ARHGVRVDEIRRPHEAAFELLRDGTADMLCAAWLPGS 66
Query: 88 EKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDI--AKYKKELGAKIYGI 145
+ + L A V D A + S D+ A + I GI
Sbjct: 67 HGAYFDAIADAFDPLAEMYAPYAL--WGVPDYVPADAVSSVADLTRADVVARMTPLIQGI 124
Query: 146 EPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINS 205
PG ++ ++ G+R + A R V W+P ++
Sbjct: 125 GPGAGISRFSREIFAAYALDAHGYRFANGTLEACVDAFERAIARRAWIVVPLWQPQYLHW 184
Query: 206 DLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP-NISRLLKNIKFSVALENEMMKLILN 264
I L + +A V+R ++ P + L+ ++ A + LI
Sbjct: 185 RHTIRELREPRGLLRGTDA-ATLVLRKSTRERLPADAVDALRRLRPGNAGITRLDHLIAR 243
Query: 265 NKQDRQFVGRTML 277
G L
Sbjct: 244 EGLSPLEAGERHL 256
>gi|84495389|ref|ZP_00994508.1| ABC-type glycine betaine transport, substrate-binding protein
[Janibacter sp. HTCC2649]
gi|84384882|gb|EAQ00762.1| ABC-type glycine betaine transport, substrate-binding protein
[Janibacter sp. HTCC2649]
Length = 304
Score = 96.4 bits (238), Expect = 5e-18, Method: Composition-based stats.
Identities = 37/310 (11%), Positives = 96/310 (30%), Gaps = 39/310 (12%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTP----------------VRFADTGWTDIAATTAM 44
M ++ +V T + + P V + + +
Sbjct: 1 MKRMTSVLALTTAAILGLSACGGGGDPLASDSPSGSSSAGGGAVVIGSADFPESELLAEI 60
Query: 45 TSVILE-EILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIA--PYLEEGSIK 101
+ L+ + + T ++ + + ++L++ I Y + + +
Sbjct: 61 YAGALKAKGIDATTKPRIGSREIYLKALEDGSIQAIPEYTGAIGFFYDKNFKETDPEKVY 120
Query: 102 LVAENLQGAKYMLA----------VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEG 151
++L AK+ L + KS + I K G G P +
Sbjct: 121 TAIQSLIPAKFALLEKSAAEDNDSIVVTKATADSKSLKTIEDLKAVAGQMSLGAPPEFKA 180
Query: 152 N-QRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIH 210
Q + + + + K FR + + + +N + P ++
Sbjct: 181 RPQGVPGLTSTYGVTFKSFRELTGQG------LVQALKNGQVDAANIFTTDPSIAENGFV 234
Query: 211 YLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQ 270
L +++ G ++ +V D D+ + + + + ++K + +K+D +
Sbjct: 235 SLEDTKKLF--GSQNIVPLVAKDRADELAPALNAVSK-ALTTEVISGLLKETVTDKKDAK 291
Query: 271 FVGRTMLRTH 280
V L+ +
Sbjct: 292 DVAAEFLKAN 301
>gi|320198432|gb|EFW73034.1| L-proline glycine betaine binding ABC transporter protein ProX
[Escherichia coli EC4100B]
Length = 247
Score = 96.4 bits (238), Expect = 5e-18, Method: Composition-based stats.
Identities = 26/240 (10%), Positives = 69/240 (28%), Gaps = 33/240 (13%)
Query: 82 YWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQ---------DIA 132
W P + + + GA ++ + +
Sbjct: 2 NWTPLHDNMYEAAGGDKKFYREGVFVNGAAQGYLIDKKTADQYKITNIAQLKDPKIAKLF 61
Query: 133 KYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIP 192
+ A + G PG I + + + + + A + + P
Sbjct: 62 DTNGDGKADLTGCNPGWGCEGAINHQLAAYELT-NTVTHNQGNYAAMMADTISRYKEGKP 120
Query: 193 AVFLSWEPHPINSD----LNIHYLPGGEEI----------------SGFGEASVYTVVRS 232
+ +W P+ ++++ ++ +L GF ++++ V
Sbjct: 121 VFYYTWTPYWVSNELKPGKDVVWLQVPFSALPGDKNADTKLPNGANYGFPVSTMHIVANK 180
Query: 233 DYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV---GRTMLRTHPDLLKNWLI 289
+ +K P ++L ++ VA N ++ + K + ++ H W+
Sbjct: 181 AWTEKNPAAAKLFAIMQLPVADINAQNAIMHDGKASEGDIQGHVDGWIKAHQQQFDGWVN 240
>gi|89900640|ref|YP_523111.1| glycine betaine ABC transporter substrate-binding protein
[Rhodoferax ferrireducens T118]
gi|89345377|gb|ABD69580.1| Substrate-binding region of ABC-type glycine betaine transport
system [Rhodoferax ferrireducens T118]
Length = 308
Score = 96.1 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 45/301 (14%), Positives = 85/301 (28%), Gaps = 32/301 (10%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKL 61
++ L S S A PVR A T+ + M +LE G KT ++L
Sbjct: 10 LIRCTPILLLASASVFAQA----PVRVASKIDTEGSLLGNMMIQVLEAN-GIKTENKVQL 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEG------------------SIKLV 103
A + ++ ID++ Y F I +
Sbjct: 65 GATKIVRGAITAGEIDLYPEYTGNGAFFFSDEKNPAWKNAKAGYELVKKLDADKNKIVWL 124
Query: 104 AENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMINN 161
+ +A+ K K+ E +
Sbjct: 125 EPAPANNTWAIALRQDVATSNKVKSLADLGPWLAKGGQFKLAASAEFIERTDALPAFQTA 184
Query: 162 NKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISG 220
F LK +L+ + + I+ + + +++ + L + L +
Sbjct: 185 YGFKLKQDQLLTLAGGDTTVTIKAAAQQTSGVNAAMAYGTDGAIAALGLVVLDDPKG--I 242
Query: 221 FGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
+ ++R++ L + P I LL + + I QD + V LR
Sbjct: 243 QPIYAPAPLIRAETLARYPKIRDLLAPVFKTLDGPTLQALNAKIAVEGQDAKKVSADYLR 302
Query: 279 T 279
Sbjct: 303 A 303
>gi|148272885|ref|YP_001222446.1| putative glycine/betaine ABC transportersubstrate-binding protein
[Clavibacter michiganensis subsp. michiganensis NCPPB
382]
gi|147830815|emb|CAN01756.1| putative glycine/betaine ABC transporter,substrate-binding protein
[Clavibacter michiganensis subsp. michiganensis NCPPB
382]
Length = 335
Score = 96.1 bits (237), Expect = 6e-18, Method: Composition-based stats.
Identities = 25/323 (7%), Positives = 67/323 (20%), Gaps = 46/323 (14%)
Query: 1 MYKIL---AVCLFLTTFSISYARDAD------------------SCTPVRFADTGWTDIA 39
M + L A+ + + +T+
Sbjct: 10 MRRSLGVPALVTAALATLTGCGLQPATAYVPDTAPGSIQPLDLPAGAHLTVTSKNFTEQL 69
Query: 40 ATTAMTSVILEEILGYKTN--IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFI------ 91
+ + + G+ + + + G D+ Y + ++
Sbjct: 70 ILGKIAVIA-AKAAGFDVTDQTNVPGSVPARELMTSHGADMTWEYTGTAWLSYLGEAKGI 128
Query: 92 ----------APYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAK 141
+ + Y LA+ + K
Sbjct: 129 PDQRAQYEAVRDADAANGLTWLTPAPLNNTYALAIRSEEADELGITKLSQIKDLPVDQRT 188
Query: 142 IYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA--SFSQIRRDQRNNIPAVFLSWE 199
N + + ++ + ++ + +
Sbjct: 189 FCVEAEFNSRSDGLSPLLETYGIPRGSADGVPDGNVSIFDTGAVYTATDRGTCEFGEVFT 248
Query: 200 PHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENE 257
L + L +V V+ S L + P + + I + E
Sbjct: 249 TDGRIDKLGLTILEDDLGFF--PAYNVAPVLDSATLAEYPGLQDVFDRISPVITDDALRE 306
Query: 258 MMKLILNNKQDRQFVGRTMLRTH 280
M + + ++ V + H
Sbjct: 307 MNLRVDDQGEEPADVAYEFMVDH 329
>gi|307728701|ref|YP_003905925.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia sp. CCGE1003]
gi|307583236|gb|ADN56634.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia sp. CCGE1003]
Length = 261
Score = 96.1 bits (237), Expect = 6e-18, Method: Composition-based stats.
Identities = 41/244 (16%), Positives = 74/244 (30%), Gaps = 7/244 (2%)
Query: 18 YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGID 77
A A + + + A + + +L G + A F L+N D
Sbjct: 1 MAGAASAHPRITLVTIDLSFHRAASGVVRSVL-HEYGVAVDEVFAAHEQAFELLRNGKAD 59
Query: 78 IFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDI--AKYK 135
+ W PS E K+ L + V D + S D+
Sbjct: 60 MLSSAWLPSSHSIYLAPFEHEVDKI--TVLYRPYALWGVPDYVPESAVSSVADLKRPDVA 117
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
++ I GI PG ++ +MI G+ + + V
Sbjct: 118 AKMTKLIQGINPGAGISRFSREMIIQYGLQEAGYYFENGTLDDCTRAFEAAVKERRWVVV 177
Query: 196 LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS-RLLKNIKFSVAL 254
W P ++ +I L + + G G +VR L+K P + L+ +
Sbjct: 178 PLWSPQYLHEQYSIRELKDPKGLLG-GTDDATLIVRKAALEKIPQAALNALRQLTLGNRE 236
Query: 255 ENEM 258
+ +
Sbjct: 237 TSRL 240
>gi|83593720|ref|YP_427472.1| substrate-binding region of ABC-type glycine betaine transport
system [Rhodospirillum rubrum ATCC 11170]
gi|83576634|gb|ABC23185.1| Substrate-binding region of ABC-type glycine betaine transport
system [Rhodospirillum rubrum ATCC 11170]
Length = 304
Score = 96.1 bits (237), Expect = 6e-18, Method: Composition-based stats.
Identities = 39/305 (12%), Positives = 85/305 (27%), Gaps = 30/305 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-- 58
M LA ++ A A + + T+ + + LE G KT
Sbjct: 1 MKSALARLACALVLGLTTAAAARADVV--VSSKIDTEGGVLGNIMLLALEAH-GIKTEDR 57
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------I 100
++L PV +++ ID++ Y + F I
Sbjct: 58 LQLGGTPVVRKAITAGEIDLYPEYTGNAAFFFNKADDPLWKDAAQGFATAKALDYEANHI 117
Query: 101 KLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL--GAKIYGIEPGNEGNQRILDM 158
+ + +A+ + K+ +
Sbjct: 118 VWLTPAPANNTWAVALRRDLAEAETITSFSDFGKWVAGGGRVKLAASAEFVNSAAALPAF 177
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEE 217
F+L +LI S + + I+ N + + + ++ L +
Sbjct: 178 QKAYGFTLTPEQLIVLSGGDTAATIKAAADQTNGTNAAMVYGTDGGIAASDLVALSD--D 235
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
+ + +VR + L + P I +L I + + + + + V +
Sbjct: 236 KAVQPVYAPAPIVREETLKRHPEIEPILAPIFAALDLETLQALNARVQVGGEPARAVAKD 295
Query: 276 MLRTH 280
L +H
Sbjct: 296 FLTSH 300
>gi|332754761|gb|EGJ85126.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Shigella flexneri 4343-70]
Length = 293
Score = 96.1 bits (237), Expect = 6e-18, Method: Composition-based stats.
Identities = 35/291 (12%), Positives = 82/291 (28%), Gaps = 28/291 (9%)
Query: 14 FSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSL 71
+ + + +PV+ T+ A + +LE G T ++L PV ++
Sbjct: 1 MLAAVSLPLQAASPVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQLGTTPVGRGAI 59
Query: 72 KNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKLVAENLQGAKYM 113
+ +DI+ Y F + + +
Sbjct: 60 TSGELDIYPEYTGNGAFFFKDENDAAWKNAGQGYEKVKKLDAEHNKLIWLTPAPANNTWT 119
Query: 114 LAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
+AV + + K+ E + F L +L
Sbjct: 120 IAVRQDVAEKNKLTSLADLSRYLQEGGTFKLAASAEFIERADALPTFEKAYGFKLGQDQL 179
Query: 172 IEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
+ + + I+ + + +++ L + L + + + VV
Sbjct: 180 LSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVVALGLQTLSDPQGV--QPIYAPAPVV 237
Query: 231 RSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
R L + P +++ L+ + ++ I D + V L+
Sbjct: 238 RESVLKEYPQMAQWLQPVFASLDAKTLQQLNASIAVEGLDAKKVAADYLKQ 288
>gi|269217725|ref|ZP_06161579.1| ABC-type glycine betaine transport, substrate-binding protein
[Actinomyces sp. oral taxon 848 str. F0332]
gi|269212660|gb|EEZ79000.1| ABC-type glycine betaine transport, substrate-binding protein
[Actinomyces sp. oral taxon 848 str. F0332]
Length = 366
Score = 96.1 bits (237), Expect = 7e-18, Method: Composition-based stats.
Identities = 45/299 (15%), Positives = 83/299 (27%), Gaps = 35/299 (11%)
Query: 6 AVCLFLTTFSISYARDAD----------SCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
AV + +AD + + + + + LE GY
Sbjct: 72 AVAMLGAVALAVGCSNADPLRRSDGKDRAGETIVVGSQDYYSNEIIAEIYAQALEAK-GY 130
Query: 56 KTNI--KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
K K+ V +++ ID+F Y L+ + + +
Sbjct: 131 KIERQMKIGQREVYMPEVRSGSIDVFPEYTGNLLQYIDSKASVTAPEPVYRALEKKLPRE 190
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIY------------GIEPGNEGNQRILDMINN 161
L V + A SY AK+ E G + G E + +
Sbjct: 191 LTVLNQAPAADQDSYVVTAKFASENGIRTIGDLAKVKGRLVLGGNSELESRPYGPKGLKS 250
Query: 162 NKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
F IE S + R V + +P S L + +
Sbjct: 251 AYGVDVSFTPIEDSGGPLT---IKSLREGRAQVVDLYSGNPELSTGEFVVLQDPKNLFL- 306
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
+ V +V S + +R+L + K + M + + Q + + L+
Sbjct: 307 -SSHVVPLVSSKLPVR---AARILDRVSAKLTSEDLRAMGARSVKSGQPASKIAKDWLK 361
>gi|261324336|ref|ZP_05963533.1| ABC transporter [Brucella neotomae 5K33]
gi|261300316|gb|EEY03813.1| ABC transporter [Brucella neotomae 5K33]
Length = 304
Score = 95.7 bits (236), Expect = 7e-18, Method: Composition-based stats.
Identities = 53/305 (17%), Positives = 97/305 (31%), Gaps = 30/305 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-- 58
M K A L L +I ++ A++ V F+ T+ + +L G KT
Sbjct: 1 MLKGSAFALALFVGAIQFSSLAEAQ--VAFSSKIDTEGGVLGNIILTVLNAN-GIKTTDR 57
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPS------------------LEKFIAPYLEEGSI 100
I+L A PV +++ IDI+ Y + E + I
Sbjct: 58 IQLGATPVVRKAITAGEIDIYPEYTGNAAFFFNKADDPLWKDPAKAYETAKKLDYDANKI 117
Query: 101 KLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI 159
+ + + +AV + S D KY G + + L
Sbjct: 118 VWLTPSPANNTWGIAVRKDVANENKLASLSDFGKYIAGGGKVVLAASSEFVNSAAALPAF 177
Query: 160 N-NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEE 217
F+LK +LI S + + I N + + + + L +
Sbjct: 178 QTAYGFTLKPDQLITLSGGDTAATIAAAANQTNGANAAMVYGTDGGIAPSGLVVLED--D 235
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
++R + L K P I LLK + K + ++ + + + V
Sbjct: 236 KHVQPVYQPAPIIREEVLKKDPKIEELLKPVFEKLDLTTLQDLNGRVQLGGEPAKAVAED 295
Query: 276 MLRTH 280
L+ +
Sbjct: 296 FLKKN 300
>gi|300715962|ref|YP_003740765.1| amine ABC transporter periplasmic amine-binding protein [Erwinia
billingiae Eb661]
gi|299061798|emb|CAX58914.1| Amine ABC transporter, periplasmic amine-binding protein [Erwinia
billingiae Eb661]
Length = 306
Score = 95.7 bits (236), Expect = 8e-18, Method: Composition-based stats.
Identities = 42/279 (15%), Positives = 86/279 (30%), Gaps = 28/279 (10%)
Query: 26 TPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGIDIFMGYW 83
PV+ T+ + + +L + G KT ++L V ++ +DI+ Y
Sbjct: 27 DPVKVGSKIDTEGSLLGNIILQVL-DKHGVKTVNKVQLGTTQVVRGAITAGELDIYPEYT 85
Query: 84 YPSLEKFIAPYLEEG------------------SIKLVAENLQGAKYMLAVNDVGFALG- 124
F + + + +AV
Sbjct: 86 GNGAFFFNDEKDPAWKNAKAGYEKVKKLDQEKNKLTWLTPAPANNTWTIAVRSDLADKNK 145
Query: 125 IKSYQDIAKYKKE-LGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
+KS D++ Y K+ K+ E + F+LK +L+ + + I
Sbjct: 146 LKSLDDLSAYLKKGGEFKLAASAEFIERADALPAFQKAYGFTLKQDQLLSLAGGDTAVTI 205
Query: 184 RRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ + + +++ + L + L + + + V+R L P I+
Sbjct: 206 KAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPKGV--QPIYAPTPVIRDAVLKAYPQIA 263
Query: 243 RLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
LK + E+ I QD + V L+
Sbjct: 264 DWLKPVFASLDEKTLQELNAKIAVEGQDAKTVAADYLQQ 302
>gi|167562712|ref|ZP_02355628.1| ABC transporter, periplasmic glycine/betaine-binding protein,
putative [Burkholderia oklahomensis EO147]
gi|167569892|ref|ZP_02362766.1| ABC transporter, periplasmic glycine/betaine-binding protein,
putative [Burkholderia oklahomensis C6786]
Length = 312
Score = 95.7 bits (236), Expect = 8e-18, Method: Composition-based stats.
Identities = 41/276 (14%), Positives = 81/276 (29%), Gaps = 28/276 (10%)
Query: 28 VRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGIDIFMGYWYP 85
V A T+ + + +L+ G I L A P+ R+L IDI+ Y
Sbjct: 34 VTVASKIDTEGNLLGNVIAQVLKAH-GIAVVDKIGLGATPIVRRALTTGEIDIYPEYTGN 92
Query: 86 SLEKFIAPYLEEGS------------------IKLVAENLQGAKYMLAVNDVGFA-LGIK 126
+ F I +A + +AV +K
Sbjct: 93 AAFFFNKADDPAWKNAAQGYALAKQLDYAANRIVWLAPAPANNTWGVAVLSSVAKSQHLK 152
Query: 127 SYQDIAKYKKE-LGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
++ D K+ K+ + F LK +++ S + + I+
Sbjct: 153 TFSDFGKWVGAGGKVKLAASAEFVNSASALPSFEKAYGFKLKPEQMLVLSGGDTAATIKA 212
Query: 186 DQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
+ + + + + + L + + +VR L P I+
Sbjct: 213 AAQQTDGVNAAMVYGTDGGIAATGLTVLDD--DKHVQPVYAPTPIVREAVLKAHPQIADY 270
Query: 245 LKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
LK + + + I N + V + L+
Sbjct: 271 LKPVFASLDLKTLQTLNARIQINGEPAASVAASYLK 306
>gi|311899549|dbj|BAJ31957.1| putative osmoprotectant ABC transporter substrate-binding protein
[Kitasatospora setae KM-6054]
Length = 310
Score = 95.7 bits (236), Expect = 8e-18, Method: Composition-based stats.
Identities = 38/268 (14%), Positives = 80/268 (29%), Gaps = 29/268 (10%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGIDIFMGYWY 84
V + + ++ + L+ G K K + V + +++ + + Y
Sbjct: 51 TVVVGSANFPENVLLASIYAQALKAK-GVKVEEKFNIGSREVLYGQVQSGALTVLPEYNG 109
Query: 85 PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKS------------YQDIA 132
L A G + E LA+ D A S + IA
Sbjct: 110 ALLGYLDAKSTATGKDAVNTELKAKLPAGLAILDSSAAEDKDSLTVTQETADKLGVKSIA 169
Query: 133 KYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIP 192
+ + G P + + + + K ++ + ++
Sbjct: 170 DLAGKAQDLVVGGPPEFKSRRE-QQFKDVYGLTFKEWK-------PTGETTANALKDGGI 221
Query: 193 AVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KF 250
V + P L + L + + +V +V + LD + L + K
Sbjct: 222 QVGNVFTTDPKIVQLKLVSLADPKNVFS--SQNVTPLVNTAGLDATGTAA--LNAVSAKL 277
Query: 251 SVALENEMMKLILNNKQDRQFVGRTMLR 278
A +MK + +K+D V + L+
Sbjct: 278 DTAGLTALMKRVAVDKEDPAAVAKDWLK 305
>gi|17988008|ref|NP_540642.1| glycine betaine-binding protein precursor [Brucella melitensis bv.
1 str. 16M]
gi|23501132|ref|NP_697259.1| ABC transporter periplasmic substrate-binding protein [Brucella
suis 1330]
gi|62289197|ref|YP_220990.1| ABC transporter periplasmic substrate-binding protein [Brucella
abortus bv. 1 str. 9-941]
gi|82699133|ref|YP_413707.1| glycine betaine ABC transporter substrate-binding protein [Brucella
melitensis biovar Abortus 2308]
gi|256258777|ref|ZP_05464313.1| Substrate-binding region of ABC-type glycine betaine transport
system [Brucella abortus bv. 9 str. C68]
gi|256368686|ref|YP_003106192.1| ABC transporter, periplasmic substrate-binding protein, putative
[Brucella microti CCM 4915]
gi|260169792|ref|ZP_05756603.1| Substrate-binding region of ABC-type glycine betaine transport
system [Brucella sp. F5/99]
gi|260563292|ref|ZP_05833778.1| ABC transporter [Brucella melitensis bv. 1 str. 16M]
gi|260759303|ref|ZP_05871651.1| ABC transporter [Brucella abortus bv. 4 str. 292]
gi|261215354|ref|ZP_05929635.1| ABC transporter [Brucella abortus bv. 3 str. Tulya]
gi|261218220|ref|ZP_05932501.1| ABC transporter [Brucella ceti M13/05/1]
gi|261320932|ref|ZP_05960129.1| ABC transporter [Brucella ceti M644/93/1]
gi|17983752|gb|AAL52906.1| glycine betaine-binding protein precursor [Brucella melitensis bv.
1 str. 16M]
gi|23347005|gb|AAN29174.1| ABC transporter, periplasmic substrate-binding protein, putative
[Brucella suis 1330]
gi|62195329|gb|AAX73629.1| ABC transporter, periplasmic substrate-binding protein,
hypothetical [Brucella abortus bv. 1 str. 9-941]
gi|82615234|emb|CAJ10182.1| Substrate-binding region of ABC-type glycine betaine transport
system [Brucella melitensis biovar Abortus 2308]
gi|255998844|gb|ACU47243.1| ABC transporter, periplasmic substrate-binding protein, putative
[Brucella microti CCM 4915]
gi|260153308|gb|EEW88400.1| ABC transporter [Brucella melitensis bv. 1 str. 16M]
gi|260669621|gb|EEX56561.1| ABC transporter [Brucella abortus bv. 4 str. 292]
gi|260916961|gb|EEX83822.1| ABC transporter [Brucella abortus bv. 3 str. Tulya]
gi|260923309|gb|EEX89877.1| ABC transporter [Brucella ceti M13/05/1]
gi|261293622|gb|EEX97118.1| ABC transporter [Brucella ceti M644/93/1]
Length = 304
Score = 95.7 bits (236), Expect = 9e-18, Method: Composition-based stats.
Identities = 52/305 (17%), Positives = 96/305 (31%), Gaps = 30/305 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-- 58
M K A L L +I ++ A++ V + T+ + +L G KT
Sbjct: 1 MLKGSAFALALFVGAIQFSSLAEAQ--VAVSSKIDTEGGVLGNIILTVLNAN-GIKTTDR 57
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPS------------------LEKFIAPYLEEGSI 100
I+L A PV +++ IDI+ Y + E + I
Sbjct: 58 IQLGATPVVRKAITAGEIDIYPEYTGNAAFFFNKADDPLWKDPAKAYETAKKLDYDANKI 117
Query: 101 KLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI 159
+ + + +AV + S D KY G + + L
Sbjct: 118 VWLTPSPANNTWGIAVRKDVANENKLASLSDFGKYIAGGGKVVLAASSEFVNSAAALPAF 177
Query: 160 N-NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEE 217
F+LK +LI S + + I N + + + + L +
Sbjct: 178 QTAYGFTLKPDQLITLSGGDTAATIAAAANQTNGANAAMVYGTDGGIAPSGLVVLED--D 235
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
++R + L K P I LLK + K + ++ + + + V
Sbjct: 236 KHVQPVYQPAPIIREEVLKKDPKIEELLKPVFEKLDLTTLQDLNGRVQLGGEPAKAVAED 295
Query: 276 MLRTH 280
L+ +
Sbjct: 296 FLKKN 300
>gi|209547756|ref|YP_002279673.1| substrate-binding region of ABC-type glycine betaine transporter
[Rhizobium leguminosarum bv. trifolii WSM2304]
gi|209533512|gb|ACI53447.1| Substrate-binding region of ABC-type glycine betaine transport
system [Rhizobium leguminosarum bv. trifolii WSM2304]
Length = 302
Score = 95.3 bits (235), Expect = 9e-18, Method: Composition-based stats.
Identities = 53/304 (17%), Positives = 98/304 (32%), Gaps = 32/304 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-- 58
M K LA+ + L+ F++ A AD V + T+ + ++ LE G KT
Sbjct: 1 MLKKLALAVSLSAFAVGAAHAAD----VVVSSKIDTEGTLLGNVIALALEAN-GIKTQDR 55
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------I 100
I L A PV +++ IDI+ Y + F I
Sbjct: 56 IALGATPVVRKAITAGEIDIYPEYTGNAGFFFNKADDAAWKNIDQGYELAKKLDYDANKI 115
Query: 101 KLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI 159
+ + + LAV + +KS D K+ GA + L
Sbjct: 116 VWLTPSPANNTWALAVRNDVAEPNKLKSLTDFGKWIAGGGAAKLAASSEFVNSAGALPAF 175
Query: 160 NN-NKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEE 217
F LK +++ S + + I+ N + + + L +
Sbjct: 176 QTTYGFQLKPDQMVVLSGGDTAATIKAAADQTNGVNTAMVYGTDGAIEAAELTVLEDDKN 235
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
+ + ++R + L P I +L I + ++ I + + + V
Sbjct: 236 VQQ--VYAPTPIIREEVLKANPKIEEVLSPIFKSLTADELRKLNAKIQVDGEPAKSVAEA 293
Query: 276 MLRT 279
L+
Sbjct: 294 YLKE 297
>gi|330955422|gb|EGH55682.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae Cit 7]
Length = 177
Score = 95.3 bits (235), Expect = 9e-18, Method: Composition-based stats.
Identities = 38/181 (20%), Positives = 71/181 (39%), Gaps = 9/181 (4%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADT-GWTDIAATTAMTSVILEEILGYKTNI 59
M KIL L S A++ + GW+D ATT + S ++++ LGY +
Sbjct: 3 MRKILGAGAALVLAVSSTLAVAET-KTLTIGYVEGWSDSVATTFVASEVIKQKLGYDVKL 61
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ +A + ++++ +D+ + W P ++ + N + AK L V +
Sbjct: 62 QSVAAGIMWQAVATDKLDLMLSAWLPGTHGEYYAKYKD-QVVNYGPNFKDAKIGLIVPEY 120
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
A I+ K KI GI+ G+ + I + G++L +S
Sbjct: 121 VKAKTIEDL----KTDASFNKKITGIDAGSGVMLKTDQAIKDYGLD--GYKLQASSGAGM 174
Query: 180 F 180
Sbjct: 175 M 175
>gi|148272713|ref|YP_001222274.1| putative proline/glycine/betaine/choline ABC transporter
substrate-binding protein [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
gi|147830643|emb|CAN01579.1| putative proline/glycine/betaine/choline ABC transporter,
substrate-binding protein [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
Length = 309
Score = 95.3 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 35/295 (11%), Positives = 83/295 (28%), Gaps = 25/295 (8%)
Query: 5 LAVCLFLTTFSIS--------YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
+ + L + + A + + + + + LE K
Sbjct: 16 VGTAMALAGCASGDPTDPTGGQSASAAPTDTISVGSAAFGENVILAEVYAQALEAN-DVK 74
Query: 57 TN--IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
+++ V ++L+ ID+ Y L + A S + A
Sbjct: 75 VTRNLQIGEREVYLKALEEGSIDLIPEYTGNLLAAYDADSTATSSDDVYAALGDALPDGF 134
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
V D A SY +Y + G G ++ ++ + G
Sbjct: 135 EVLDESPAEDKDSYNVTKEYSETNGVTSLSDLKGKTVRVGGGAVLGEREYGIPGLTGTYG 194
Query: 175 SELASFS-------QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
+ + + + + + + P D L E + +V
Sbjct: 195 VDASLVTIEDQGGPNTVKALLDGQVDMANIYSTTPSILDNGFVTLEDPENL--IKAQNVV 252
Query: 228 TVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLIL-NNKQDRQFVGRTMLRT 279
+V + P+++ +L + + EM + + K + + + L+
Sbjct: 253 PLVNT--AKMNPDVTAILDKVSAALTTEDLTEMNRRNQGDEKAEPKAIAADWLKE 305
>gi|163840642|ref|YP_001625047.1| glycine betaine-binding protein [Renibacterium salmoninarum ATCC
33209]
gi|162954118|gb|ABY23633.1| glycine betaine-binding protein [Renibacterium salmoninarum ATCC
33209]
Length = 332
Score = 95.3 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 26/276 (9%), Positives = 62/276 (22%), Gaps = 25/276 (9%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPVTFRSLKNKGIDIFMG 81
+ + +T+ + V+ + G+ + + + + NKG D+
Sbjct: 52 AGAALTVTSKNFTEQIVLGKIA-VLATKAAGFDVTDLTNVPGSVPSRQLMLNKGADMAWE 110
Query: 82 YWYPSLEKFI----------------APYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
Y + ++ + +A Y A
Sbjct: 111 YTGTAWLTYLGNTKGIPDQQQQWQAVHDADLANGLTWLAPAPLNNTYAFAKVSGNPRFSN 170
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF--SQI 183
+ N M+ + + S + +
Sbjct: 171 VTKLSDLANVPVADRTFCVESEFNSRVDGFNPMLAHYGLKRGAADGVPDSNIRILDTGAV 230
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
N + LN+ L + + + L+K P +
Sbjct: 231 YTGVANGSCNFGEVFTTDGRIPALNLQVLDDDKGFF--PGYNAAPEFATKTLEKYPELKE 288
Query: 244 LLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
L +I K + + ++ V L
Sbjct: 289 LFNSISAKLDNPTMQRLNAEVDVAGKEPVDVAFQWL 324
>gi|331698881|ref|YP_004335120.1| glycine betaine ABC transporter periplasmic subunit [Pseudonocardia
dioxanivorans CB1190]
gi|326953570|gb|AEA27267.1| ABC-type glycine betaine transport, periplasmic subunit
[Pseudonocardia dioxanivorans CB1190]
Length = 306
Score = 95.3 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 24/275 (8%), Positives = 69/275 (25%), Gaps = 29/275 (10%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGIDIFMGY 82
V + + + + L+ G K +++ + F ++K ID+ Y
Sbjct: 40 ADTVVIGSANFVESQIIANIYAQALQAK-GVKVDLRPPIGSRETYFPAIKEGSIDLIPEY 98
Query: 83 WYPSLEKFIA--------------PYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSY 128
L+ ++ ++ + K + V +
Sbjct: 99 TGTLLQYLNKNATETEPDAVYTALKAALPDNLTVLDKAAAEDKDAVVVTKDTATKYNATS 158
Query: 129 QDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQR 188
G I + + K ++ ++A + + +
Sbjct: 159 IADLA-PNCGQLTFGGPPEFQTRPDGIPGIQKTYNCTFKEYKALDAGGPLTVA----ALK 213
Query: 189 NNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI 248
N + L ++ +V ++ + +L I
Sbjct: 214 NGDIQAADIFTTDASIPTNGFVVLTDPKDNF--AAQNVVPLINK--AKGTGTTADVLNQI 269
Query: 249 --KFSVALENEMMKLILNNKQ-DRQFVGRTMLRTH 280
K + ++ ++ + V + L +
Sbjct: 270 SAKLTTEGLTQLNAEASSDAKPSLATVAKNWLSQN 304
>gi|237785024|ref|YP_002905729.1| ABC transporter substrate-binding protein [Corynebacterium
kroppenstedtii DSM 44385]
gi|237757936|gb|ACR17186.1| ABC-type transport system, substrate-binding protein
[Corynebacterium kroppenstedtii DSM 44385]
Length = 355
Score = 95.3 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 34/308 (11%), Positives = 84/308 (27%), Gaps = 37/308 (12%)
Query: 4 ILAVCLFLTTFSISY-----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
I+ CL + T S + + + + + + LE+ K +
Sbjct: 47 IITSCLLILTLSSCARSNPLSSGSADSDTIVIGSQDYYSNEIIAEIYAQALEKN-HIKVD 105
Query: 59 IKL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPY---------LEEGSIKLVAENL 107
+ V ++++ ID+ Y L+ F + + + +
Sbjct: 106 RQFRIGQREVYIPEIEHQSIDLIPEYSGNLLQYFEKESSHGDNDNATAAKDPDDVYRDLV 165
Query: 108 QGAKYMLAVNDVGFALGIKSYQDIAKYKKELG------------AKIYGIEPGNEGNQRI 155
L + + A +Y + + + YG E
Sbjct: 166 HATPQGLHLLNYSPASDQDTYTVTHDFARRYHLHSVGDLARVPGSVKYGGPSEAESRPYG 225
Query: 156 LDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG 215
+ F IE S + + V + P N+ L
Sbjct: 226 PTGLKAVYSVDVDFTPIEDSGGPLT---VKALTDGKIQVANIFSADPAIKKNNLTVLDDP 282
Query: 216 EEISGFGEASVYTVVRSDYLD-KCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFV 272
+ + ++V + + K ++ +I K + E+ + +++ +
Sbjct: 283 QHLLL--PSNVVPLASKKLNNFKDGKAEDIINSISKKMTTEDLAELNNESVTDQKRAARI 340
Query: 273 GRTMLRTH 280
+ L +
Sbjct: 341 AKEWLAHN 348
>gi|150376771|ref|YP_001313367.1| substrate-binding region of ABC-type glycine betaine transport
system [Sinorhizobium medicae WSM419]
gi|150031318|gb|ABR63434.1| Substrate-binding region of ABC-type glycine betaine transport
system [Sinorhizobium medicae WSM419]
Length = 305
Score = 95.3 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 49/305 (16%), Positives = 89/305 (29%), Gaps = 29/305 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-- 58
M L T F ++ A V + T+ + IL KT
Sbjct: 1 MRLNFTRTLIGTAFVLALATAPAEAD-VVVSSKIDTEGGVLGNIILSILNAN-DIKTTDR 58
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------I 100
++L A PV +++ IDI+ Y + F I
Sbjct: 59 VQLGATPVVRKAIIAGEIDIYPEYTGNAAFFFEKAEDPAWKDAAKAYEEAKKLDYEANKI 118
Query: 101 KLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI 159
+ + + +A+ +K+ D KY G + + L
Sbjct: 119 VWLTPSPANNTWAIALRKDVAEKNNLKTLSDFGKYVSGGGEVVLAASSEFVNSAAALPAF 178
Query: 160 NN-NKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEE 217
F LK +LI S + + I N + + + + L +
Sbjct: 179 QTTYSFKLKPEQLITLSGGDTAATIAAAANQTNGANAAMVYGTDGGIAPSGLVVLEDDKG 238
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
+ V+R L + P I LLK + K + E+ + + + V
Sbjct: 239 V--QPVYQPAPVIREAVLKENPAIEELLKPVFEKLDLTTLQELNGRVQVGGESAKAVAED 296
Query: 276 MLRTH 280
L+ +
Sbjct: 297 FLKAN 301
>gi|307329321|ref|ZP_07608484.1| Substrate-binding region of ABC-type glycine betaine transport
system [Streptomyces violaceusniger Tu 4113]
gi|306884989|gb|EFN16012.1| Substrate-binding region of ABC-type glycine betaine transport
system [Streptomyces violaceusniger Tu 4113]
Length = 312
Score = 95.3 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 39/312 (12%), Positives = 80/312 (25%), Gaps = 41/312 (13%)
Query: 2 YKILAVCLFLTTFSISYARDAD-----------------SCTPVRFADTGWTDIAATTAM 44
K+L L + A S + +T+ +
Sbjct: 4 RKLLGGLLAGASVPALAACSGGVTSLKGDGGSGGSGGGSSLGGLVIGTANFTENQLLGYL 63
Query: 45 TSVILEEILGYK--TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKL 102
+ L+ G K L + + +L+ ID+ Y L F + + L
Sbjct: 64 YAEALKGA-GIKTSVRPNLGSREIVIPALQQGDIDLLPEYQGNLLLHFDDKAPQTEAGDL 122
Query: 103 VAENLQGAKYMLAVNDVGFALGI------------KSYQDIAKYKKELGAKIYGIEPGNE 150
L A + A K+ G I+G ++
Sbjct: 123 QNALTVALPSGLEALSYAAAEDKDVFCVTHEAAQKHGLRSFADLAKQNGKLIFGGPAEDK 182
Query: 151 GNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIH 210
L + +++ + ++ + V + P +
Sbjct: 183 NRVVGLVGLK-DRYGVTFKEFKALDASGPL--VKGALKKGDVDVANLFSTDPDIEANDWV 239
Query: 211 YLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQD 268
L + + VVRS + + L + + + KL+ N+K+D
Sbjct: 240 ILADP--KALIPAQHIVPVVRS--AKADTKVRKALARLGGALTTQELARLNKLVSNDKKD 295
Query: 269 RQFVGRTMLRTH 280
V +
Sbjct: 296 PDRVAADWAAKN 307
>gi|218682472|ref|ZP_03530073.1| glycine betaine ABC transporter, substrate binding protein
[Rhizobium etli CIAT 894]
Length = 302
Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 53/304 (17%), Positives = 96/304 (31%), Gaps = 32/304 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-- 58
M K LA+ + L+ F+ A AD V + T+ + ++ LE G KT
Sbjct: 1 MLKKLALTVSLSAFAAGAAHAAD----VVVSSKIDTEGTLLGNVIALALEAN-GIKTQDR 55
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEG------------------SI 100
I L A PV +++ IDI+ Y + F I
Sbjct: 56 IALGATPVVRKAITAGEIDIYPEYTGNAGFFFNKADDAAWKNIDQGYELAKKLDYDANKI 115
Query: 101 KLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI 159
+ + + LAV + +KS D K+ G + L
Sbjct: 116 VWLTPSPANNTWALAVRNDVAEPNKLKSLTDFGKWVAGGGEAKLAASAEFVNSAGALPAF 175
Query: 160 N-NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEE 217
F LK +++ S + + I+ N + + + L +
Sbjct: 176 QTTYGFQLKPDQMVVLSGGDTAATIKAAADQTNGVNTAMVYGTDGAIQAAELTVLEDDKN 235
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
+ + ++R + L P I +L I S ++ I + + + V
Sbjct: 236 V--QQVYAPTPIIREEVLKANPKIEEILSPIFKSLSADELRKLNAKIQVDGEPAKSVAEA 293
Query: 276 MLRT 279
L+
Sbjct: 294 YLKE 297
>gi|302529977|ref|ZP_07282319.1| predicted protein [Streptomyces sp. AA4]
gi|302438872|gb|EFL10688.1| predicted protein [Streptomyces sp. AA4]
Length = 297
Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 35/304 (11%), Positives = 89/304 (29%), Gaps = 36/304 (11%)
Query: 1 MYK--ILAVCLFLTTFSIS----YARDADSCTPVRFADTGWTDIAATTAMTSVILEE--I 52
M + IL L L + + + + + + + + + L
Sbjct: 1 MKRWGILVAGLALLASACGNPLSGGGEGGTSGDIIIGASDVGESSLLAQIYAGALRNVGA 60
Query: 53 LGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYP------------SLEKFIAPYLEE--G 98
+ + V ++L++K + + Y + E A ++
Sbjct: 61 HNVTVRPPVGSREVVVKALQDKSLSVVPDYSGNLLRYFDKSTPATTSEDVYAQLKQKIPR 120
Query: 99 SIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+++ ++ K +L V A G+K++ D+ K+L G D
Sbjct: 121 GFEVLDQSPAQDKDLLVVGKELAATGVKTFSDLGPRCKDLVM---GGPGQWSSRW--KDR 175
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
I + + + + ++ V + + L +
Sbjct: 176 IKQL-YGCEFKEIRTTDTGGPVT--VAALKSGEVQVADLFSTSATIASNGFVPLED--DK 230
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTM 276
F ++ +V L+ + L + + E+ + K++ + V
Sbjct: 231 HMFPAQNIVPLVARGTLNAAETAA--LNRVSAALTTEQLTELNVQYTDEKRNAKDVAEEF 288
Query: 277 LRTH 280
LR +
Sbjct: 289 LRRN 292
>gi|167620007|ref|ZP_02388638.1| ABC transporter, periplasmic glycine/betaine-binding protein,
putative [Burkholderia thailandensis Bt4]
gi|257139116|ref|ZP_05587378.1| ABC transporter, periplasmic glycine/betaine-binding protein,
putative [Burkholderia thailandensis E264]
Length = 312
Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 39/289 (13%), Positives = 85/289 (29%), Gaps = 28/289 (9%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKN 73
+ A A + + A T+ + + +L+ G I L A P+ ++L
Sbjct: 22 CATAPGAHAAGAITVASKIDTEGNLLGNVIAQVLKAH-GIAVVDKIGLGATPIVRKALTT 80
Query: 74 KGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKLVAENLQGAKYMLA 115
IDI+ Y + F I +A + +A
Sbjct: 81 GEIDIYPEYTGNAAFFFNKADDPAWKNAAQGYALARQLDYAANRIVWLAPAPANNTWGVA 140
Query: 116 VNDVGFAL-GIKSYQDIAKYKKE-LGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
V +K++ D ++ K+ + F LK +++
Sbjct: 141 VLSSVAQAQHLKTFSDFGRWVGAGGKVKLAASAEFVNSASALPSFEKVYGFKLKQEQMLV 200
Query: 174 ASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRS 232
S + + I+ + + + + + + L + + ++R
Sbjct: 201 LSGGDTAATIKAAAQQTDGVNAAMVYGTDGGIAAAGLTVLDD--DKHVQPVYAPTPIIRE 258
Query: 233 DYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
L P I+ LK + + + I N + V + L+
Sbjct: 259 AVLKAHPQIADYLKPVFAGLDLKTLQTLNARIQINGEPAASVAASYLKA 307
>gi|313651234|gb|EFS15632.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Shigella flexneri 2a str. 2457T]
gi|332765939|gb|EGJ96149.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Shigella flexneri 2930-71]
Length = 289
Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 35/282 (12%), Positives = 81/282 (28%), Gaps = 28/282 (9%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGIDIFM 80
+ +PV+ T+ A + +LE G T ++L PV ++ + +DI+
Sbjct: 6 QAASPVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQLGTTPVGRGAITSDELDIYP 64
Query: 81 GYWYPSLEKFIAPYLEEGS------------------IKLVAENLQGAKYMLAVNDVGFA 122
Y F + + + +AV
Sbjct: 65 EYTGNGAFFFKDENDAAWKNAGQGYEKVKKLDAEHNKLIWLTPAPANNTWTIAVRQDVAE 124
Query: 123 LGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ + K+ E + F L +L+ + +
Sbjct: 125 KNKLTSLADLSRYLQEGGTFKLAASAEFIERADALPTFEKAYGFKLGQDQLLSLAGGDTA 184
Query: 181 SQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
I+ + + +++ + L + L + + + VVR L + P
Sbjct: 185 VTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV--QPIYAPAPVVRESVLKEYP 242
Query: 240 NISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+++ L+ + ++ I D + V L+
Sbjct: 243 QMAQWLQPVFASLDAKTLQQLNASIAVEGLDAKKVAADYLKQ 284
>gi|239629178|ref|ZP_04672209.1| ABC-type proline/glycine betaine transport system protein
[Lactobacillus paracasei subsp. paracasei 8700:2]
gi|239528555|gb|EEQ67556.1| ABC-type proline/glycine betaine transport system protein
[Lactobacillus paracasei subsp. paracasei 8700:2]
Length = 233
Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 19/239 (7%), Positives = 54/239 (22%), Gaps = 15/239 (6%)
Query: 44 MTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLV 103
M + + + +G + + + + L + + +
Sbjct: 1 MYNALRTDKIGIYPEFSGTVLASLTKPSAAQQQQVTA---GKDNYPLAKKLLAKQGLSYL 57
Query: 104 AENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK 163
Y L V + + +D + K
Sbjct: 58 KPMAYNNTYALVVKESFAKRY--------DLHTISDLGKIAPSIRAGFDLEFIDRQDGYK 109
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+ L + S + + + ++ L + +
Sbjct: 110 GIQSKYGLQFKVDSMDASLRYQALDRGQINLTDGYTTDAQLRQYHLVALQDDKGLF--PI 167
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
++R+ + +K P + L + + + M + + V L H
Sbjct: 168 YRGAPLMRTAFAEKHPQLVAALNKLAGQITEKQMQTMNYAVSVKNEKAATVAHRYLVQH 226
>gi|189023468|ref|YP_001934236.1| Substrate-binding region of ABC-type glycine betaine transport
system [Brucella abortus S19]
gi|189019040|gb|ACD71762.1| Substrate-binding region of ABC-type glycine betaine transport
system [Brucella abortus S19]
Length = 309
Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 50/301 (16%), Positives = 92/301 (30%), Gaps = 32/301 (10%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLL 62
A+ LF+ S +A V + T+ + +L G KT I+L
Sbjct: 12 FALALFVGAIQFSSLAEAQ----VAVSSKIDTEGGVLGNIILTVLNAN-GIKTTDRIQLG 66
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPS------------------LEKFIAPYLEEGSIKLVA 104
A PV +++ IDI+ Y + E + I +
Sbjct: 67 ATPVVRKAITAGEIDIYPEYTGNAAFFFNKADDPLWKDPAKAYETAKKLDYDANKIVWLT 126
Query: 105 ENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN-NN 162
+ + +AV + S D KY G + + L
Sbjct: 127 PSPANNTWGIAVRKDVANENKLASLSDFGKYIAGGGKVVLAASSEFVNSAAALPAFQTAY 186
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
F+LK +LI S + + I N + + + + L +
Sbjct: 187 GFTLKPDQLITLSGGDTAATIAAAANQTNGANAAMVYGTDGGIAPSGLVVLED--DKHVQ 244
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++R + L K P I LLK + K + ++ + + + V L+
Sbjct: 245 PVYQPAPIIREEVLKKDPKIEELLKPVFEKLDLTTLQDLNGRVQLGGEPAKAVAEDFLKK 304
Query: 280 H 280
+
Sbjct: 305 N 305
>gi|310824496|ref|YP_003956854.1| glycine betaine/l-proline ABC transporter permease and
substrate-binding protein [Stigmatella aurantiaca
DW4/3-1]
gi|309397568|gb|ADO75027.1| Glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Stigmatella aurantiaca
DW4/3-1]
Length = 510
Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 24/280 (8%), Positives = 68/280 (24%), Gaps = 24/280 (8%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKLLAVPVTFRSLKN 73
+ VR +T+ M + + + +L V + +L+
Sbjct: 16 GACVSAPPAGEAQVRVGSKKFTESVIIGEMVTRLARDAGARAVHRRELGGTAVLWEALRR 75
Query: 74 KGIDIFMGYWYPSLEKFIA-----------PYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
+D++ Y ++ A L +++ A Y L + +
Sbjct: 76 GELDVYPEYTGTLRQELFAGRALRDDAALREALAAEGLRMSAPLGFNNTYALGMKESEAE 135
Query: 123 LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ I+ ++ ++ + + + +
Sbjct: 136 R--LGVRRISDLRRHPELRLGLSNEFMDRADGWPALRERYQLPQREV------RGLDHDL 187
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
R ++ V + + + L + + R + + P +
Sbjct: 188 AYRALQSGALQVTDLYSTDAEIAAYGLRVLEDDLKHF--PTYDAVLLYREAWAVRAPGVL 245
Query: 243 RLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
L + + S + V L +
Sbjct: 246 ASLSRLEGQLSEQEMVTLNARARLEHVPETRVAAEFLARN 285
>gi|260761025|ref|ZP_05873368.1| ABC transporter [Brucella abortus bv. 2 str. 86/8/59]
gi|261221449|ref|ZP_05935730.1| ABC transporter [Brucella ceti B1/94]
gi|261314565|ref|ZP_05953762.1| ABC transporter [Brucella pinnipedialis M163/99/10]
gi|261316879|ref|ZP_05956076.1| ABC transporter [Brucella pinnipedialis B2/94]
gi|261751548|ref|ZP_05995257.1| ABC transporter [Brucella suis bv. 5 str. 513]
gi|265987949|ref|ZP_06100506.1| ABC transporter [Brucella pinnipedialis M292/94/1]
gi|265992423|ref|ZP_06104980.1| ABC transporter [Brucella melitensis bv. 1 str. Rev.1]
gi|265994166|ref|ZP_06106723.1| ABC transporter [Brucella melitensis bv. 3 str. Ether]
gi|265997411|ref|ZP_06109968.1| ABC transporter [Brucella ceti M490/95/1]
gi|260671457|gb|EEX58278.1| ABC transporter [Brucella abortus bv. 2 str. 86/8/59]
gi|260920033|gb|EEX86686.1| ABC transporter [Brucella ceti B1/94]
gi|261296102|gb|EEX99598.1| ABC transporter [Brucella pinnipedialis B2/94]
gi|261303591|gb|EEY07088.1| ABC transporter [Brucella pinnipedialis M163/99/10]
gi|261741301|gb|EEY29227.1| ABC transporter [Brucella suis bv. 5 str. 513]
gi|262551879|gb|EEZ07869.1| ABC transporter [Brucella ceti M490/95/1]
gi|262765147|gb|EEZ11068.1| ABC transporter [Brucella melitensis bv. 3 str. Ether]
gi|263003489|gb|EEZ15782.1| ABC transporter [Brucella melitensis bv. 1 str. Rev.1]
gi|264660146|gb|EEZ30407.1| ABC transporter [Brucella pinnipedialis M292/94/1]
Length = 312
Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 50/301 (16%), Positives = 92/301 (30%), Gaps = 32/301 (10%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLL 62
A+ LF+ S +A V + T+ + +L G KT I+L
Sbjct: 15 FALALFVGAIQFSSLAEAQ----VAVSSKIDTEGGVLGNIILTVLNAN-GIKTTDRIQLG 69
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPS------------------LEKFIAPYLEEGSIKLVA 104
A PV +++ IDI+ Y + E + I +
Sbjct: 70 ATPVVRKAITAGEIDIYPEYTGNAAFFFNKADDPLWKDPAKAYETAKKLDYDANKIVWLT 129
Query: 105 ENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN-NN 162
+ + +AV + S D KY G + + L
Sbjct: 130 PSPANNTWGIAVRKDVANENKLASLSDFGKYIAGGGKVVLAASSEFVNSAAALPAFQTAY 189
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
F+LK +LI S + + I N + + + + L +
Sbjct: 190 GFTLKPDQLITLSGGDTAATIAAAANQTNGANAAMVYGTDGGIAPSGLVVLED--DKHVQ 247
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++R + L K P I LLK + K + ++ + + + V L+
Sbjct: 248 PVYQPAPIIREEVLKKDPKIEELLKPVFEKLDLTTLQDLNGRVQLGGEPAKAVAEDFLKK 307
Query: 280 H 280
+
Sbjct: 308 N 308
>gi|239981979|ref|ZP_04704503.1| ABC transporter substrate-binding protein [Streptomyces albus
J1074]
Length = 327
Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 34/279 (12%), Positives = 74/279 (26%), Gaps = 29/279 (10%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGIDIF 79
+ +T+ A+ + + G + ++K+ D
Sbjct: 47 PLEGAKLTVTSKEFTEQLVLGAIMGIAFQAA-GASVLDRTGIQGSIGAREAVKSGDADAM 105
Query: 80 MGYWYPSLEKFI----------------APYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
Y S ++ + I + Y LAVN
Sbjct: 106 YEYTGTSWITYLGNSEPIVDPQEQWEAVRKADKANGITWLPPARLNNTYALAVNPATEKK 165
Query: 124 G-IKSYQDIAKYKKELGAKIYGI--EPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
IK+ +A+ K + + M ++ + + +
Sbjct: 166 YGIKNLSQVAELSKRDPGAVTLCVESEFASRQDGLPGMQKKYGMNIPASNIKKMDGGIVY 225
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+++ A + L++ L + +V + + L+K P
Sbjct: 226 TELSS---GRSCAFGEVFTTDGRIKALDLTVLDDDKNFF--PNYNVAPEINTKALEKYPA 280
Query: 241 ISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
I +L I K A+ E+ + QD V +
Sbjct: 281 IPEVLAPITAKLDNAIAQELNSKVAVQGQDPHTVALEWM 319
>gi|317057978|gb|ADU90695.1| putative substrate binding transport protein [Collimonas sp.
MPS11E8]
Length = 305
Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 48/295 (16%), Positives = 94/295 (31%), Gaps = 28/295 (9%)
Query: 9 LFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPV 66
L + A + P+R T+ A + ++LE G KT +L V
Sbjct: 8 LATLFAFTLFTAHAQAAEPIRVGSKIDTEGALLGNVIQLVLEAN-GIKTINRQQLGTTKV 66
Query: 67 TFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKLVAENLQ 108
+L GIDI+ Y F + + +
Sbjct: 67 VRGALLAGGIDIYPEYTGNGAFFFSDGSNPAWKNAGNGYQLVKKLDADKNHVVWLTPSPA 126
Query: 109 GAKYMLAVNDVGFAL-GIKSYQDIAKYKKE-LGAKIYGIEPGNEGNQRILDMINNNKFSL 166
+++A+ +K+ D+ ++ + K+ E + N F L
Sbjct: 127 NNTWLIAIRKEIAQANNLKTMADLGRWVSQGGKIKLAASAEFIERPDALPAFENAYGFKL 186
Query: 167 KGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEAS 225
K +L+ + + + I+ + + + + L + L S +
Sbjct: 187 KQDQLLTLAGGDTAATIKAAAEQTSGVNAAMVYGTDGAVAALGLVTLDDV--KSVQPVYA 244
Query: 226 VYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
V+RSD L + P I+ LL+ + ++ I +D + V LR
Sbjct: 245 PAPVIRSDALAREPRIAALLQPVFNSLDSVTLQKLNAGIAIEGRDARKVASDYLR 299
>gi|170782149|ref|YP_001710482.1| putative secreted substrate-binding transport protein [Clavibacter
michiganensis subsp. sepedonicus]
gi|169156718|emb|CAQ01878.1| putative secreted substrate-binding transport protein [Clavibacter
michiganensis subsp. sepedonicus]
Length = 308
Score = 94.5 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 36/298 (12%), Positives = 79/298 (26%), Gaps = 32/298 (10%)
Query: 5 LAVCLFLTTFSIS-------YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
L + L S + A + + + + + LE K
Sbjct: 16 LGTAMALAGCSSGDPLDTSGGSASAAPTDTISVGSAAFGENVILAEVYAQALEAN-DVKV 74
Query: 58 N--IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
+++ V ++L+ ID+ Y L + S + A
Sbjct: 75 TRNLQIGEREVYLKALEEGSIDLIPEYTGNLLAAYDDESTATSSDDVYAALGAALPDGFE 134
Query: 116 VNDVGFALGIKSYQDIAKYK-----------KELGAKIYGIEPGNEGNQRILDMINNNKF 164
V D A SY +Y K+ ++ G E I +
Sbjct: 135 VLDESPAEDKDSYNVTKEYSAANGVTSLSDLKDKTVRVGGGAVLGEREYGIPGLTGTYGI 194
Query: 165 SLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEA 224
+ + + + + + + P D L E +
Sbjct: 195 DASLVTIEDQGGPNTV----KALLDGQVDMANIYSTTPSILDNGFVTLEDPENL--IKAQ 248
Query: 225 SVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLIL-NNKQDRQFVGRTMLRT 279
+V +V P+++ +L + + +M + + K + + L+
Sbjct: 249 NVVPLV--KTAKMNPDVTAILDKVSAALTTEDLTKMNRRNQGDEKAEPAAIAADWLKE 304
>gi|256060357|ref|ZP_05450530.1| Substrate-binding region of ABC-type glycine betaine transport
system [Brucella neotomae 5K33]
Length = 303
Score = 94.5 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 52/306 (16%), Positives = 94/306 (30%), Gaps = 33/306 (10%)
Query: 1 MY-KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN- 58
M A+ LF+ S +A V F+ T+ + +L G KT
Sbjct: 1 MKGSAFALALFVGAIQFSSLAEAQ----VAFSSKIDTEGGVLGNIILTVLNAN-GIKTTD 55
Query: 59 -IKLLAVPVTFRSLKNKGIDIFMGYWYPS------------------LEKFIAPYLEEGS 99
I+L A PV +++ IDI+ Y + E +
Sbjct: 56 RIQLGATPVVRKAITAGEIDIYPEYTGNAAFFFNKADDPLWKDPAKAYETAKKLDYDANK 115
Query: 100 IKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
I + + + +AV + S D KY G + + L
Sbjct: 116 IVWLTPSPANNTWGIAVRKDVANENKLASLSDFGKYIAGGGKVVLAASSEFVNSAAALPA 175
Query: 159 IN-NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGE 216
F+LK +LI S + + I N + + + + L
Sbjct: 176 FQTAYGFTLKPDQLITLSGGDTAATIAAAANQTNGANAAMVYGTDGGIAPSGLVVLED-- 233
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ ++R + L K P I LLK + K + ++ + + + V
Sbjct: 234 DKHVQPVYQPAPIIREEVLKKDPKIEELLKPVFEKLDLTTLQDLNGRVQLGGEPAKAVAE 293
Query: 275 TMLRTH 280
L+ +
Sbjct: 294 DFLKKN 299
>gi|111022967|ref|YP_705939.1| ABC amino acid transporter, substrate binding component
[Rhodococcus jostii RHA1]
gi|110822497|gb|ABG97781.1| ABC amino acid transporter, substrate binding component
[Rhodococcus jostii RHA1]
Length = 324
Score = 94.5 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 30/282 (10%), Positives = 65/282 (23%), Gaps = 20/282 (7%)
Query: 14 FSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEE-ILGYKTNIKLLAVPVTFRSLK 72
S D + + + + + +L T + + +LK
Sbjct: 39 LSAGGEGSGDDPNTIIVGSANFPESETVANIYTEVLRANGFDVTTKFNIGSREAYIPALK 98
Query: 73 NKGIDIFMGYWYP------------SLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ ID+ Y S A +L A+ AV
Sbjct: 99 DGSIDVIPDYTGNLLQYLDPDSNATSAADVDAALPTALGSELTITTPAPAEDKDAVVVTK 158
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+ IA +G E + + + + ++
Sbjct: 159 ETAQRWNLTSIADLAAHSNEVKFGAPAEFQERPGGLPGLKAKYGLDITADNFVPIADGGG 218
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVR-SDYLDKC 238
+ + + + P + L + +V VVR DK
Sbjct: 219 PATVD-ALASGQITAADIFTTSPAIAQNGFVVLADPQNNF--AAQNVVPVVRAPKSSDKL 275
Query: 239 PNISRLLKNIKFSVALENEMMKLILNN-KQDRQFVGRTMLRT 279
L K + + + + K + + +
Sbjct: 276 TRALDALSA-KLTTEELVALNDSVSGDAKTEPAAAAKQWVTD 316
>gi|326332752|ref|ZP_08199013.1| glycine betaine/choline-binding protein of an ABC-type transport
system [Nocardioidaceae bacterium Broad-1]
gi|325949451|gb|EGD41530.1| glycine betaine/choline-binding protein of an ABC-type transport
system [Nocardioidaceae bacterium Broad-1]
Length = 302
Score = 94.5 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/277 (11%), Positives = 77/277 (27%), Gaps = 26/277 (9%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPVTFRSLKNKGID 77
V + + A + + LE G + + + + + +L++ ID
Sbjct: 31 AGGGDADTVTVGSADFPESALIAEIYAGALEAK-GVEVDKTLNIGSREAYVPALQDGSID 89
Query: 78 IFMGYWYPSLEKFIAPYLEEG--------------SIKLVAENLQGAKYMLAVNDVGFAL 123
+ Y L F + ++ + K +AV
Sbjct: 90 LIPEYTGALLHYFNEDATATDSESVYKALTAAVPKDLTVLTMSSAEDKDAIAVTKATADK 149
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
S I + + G P + ++ + + + + ++ +
Sbjct: 150 Y--SLTSIGDLAEVSDELVLGGPPEWKTRRQGVKGL-ADVYGVEFGTFRALDAGGPLT-- 204
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYT-VVRSDYLDKCPNIS 242
+ +N + P + L E S F +V + S D
Sbjct: 205 VQALKNGQVDAADLFTTDPSIQENGFIMLDDPE--SLFPAENVVPLIATSKVDDTVTQAL 262
Query: 243 RLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+ + ++K ++ +K+D + V L
Sbjct: 263 DAVSA-ELDTQTLAALVKQVIVDKKDAEDVASEFLSK 298
>gi|302560412|ref|ZP_07312754.1| permease binding-protein component [Streptomyces griseoflavus
Tu4000]
gi|302478030|gb|EFL41123.1| permease binding-protein component [Streptomyces griseoflavus
Tu4000]
Length = 325
Score = 94.5 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 26/286 (9%), Positives = 73/286 (25%), Gaps = 30/286 (10%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLK 72
+ +T+ A+ + + G + + + ++
Sbjct: 38 GSIGVGKPLEGAKLTVTSKEFTEQLILGAIMGIAFQAA-GAEVIDRTGIQGSVGSREAVV 96
Query: 73 NKGIDIFMGYWYPSLEKF----------------IAPYLEEGSIKLVAENLQGAKYMLAV 116
N D Y + + + + +A + Y LA+
Sbjct: 97 NGDADAAYEYTGTAWITYQGNSKPIPDPREQWRAVRDADVRNGVTWLAPSALNNTYALAM 156
Query: 117 NDVGFALG-IKSYQDIAKYKKELGAKIYGI--EPGNEGNQRILDMINNNKFSLKGFRLIE 173
N + ++ ++A K + + M ++ + +
Sbjct: 157 NQANYEKYRTRTLSEVAALAKSDPGAVTLCVEGEFANRADGLPGMEKAYGMNIPAANVTQ 216
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
I + +N+ + ++ + V +D
Sbjct: 217 MDTGI----IYTQTAKGACTYGEVFTTDGRIKSMNLVVMKDDKKFF--PNYNAAPTVNTD 270
Query: 234 YLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
L K P I+ +L + K + ++ + + +D V +
Sbjct: 271 TLKKWPAIAEVLDPVTAKLDNTVAQDLNAKVDVDGEDPHQVALDWM 316
>gi|302544838|ref|ZP_07297180.1| glycine betaine/choline-binding protein of an ABC-type transport
system [Streptomyces hygroscopicus ATCC 53653]
gi|302462456|gb|EFL25549.1| glycine betaine/choline-binding protein of an ABC-type transport
system [Streptomyces himastatinicus ATCC 53653]
Length = 312
Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 37/312 (11%), Positives = 76/312 (24%), Gaps = 41/312 (13%)
Query: 2 YKILAVCLFLTTFSISYARDAD-----------------SCTPVRFADTGWTDIAATTAM 44
K+L L + A S + +T+ +
Sbjct: 4 RKLLGGLLAGASVPTLAACSGGITSLKGDGAGGGQGGGSSAGGLVIGTANFTENQLLGYL 63
Query: 45 TSVILEEILGYK--TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKL 102
+ L G K L + + +L+ ID+ Y L F + + L
Sbjct: 64 YAEAL-GGAGIKTSVRPNLGSREIVIPALQQGDIDLLPEYQGNLLLHFDDKAPQTQAGDL 122
Query: 103 VAENLQGAKYMLAVNDVGFA------------LGIKSYQDIAKYKKELGAKIYGIEPGNE 150
L A + + KK+ G ++G ++
Sbjct: 123 QNALTVALPNGLEALSYAAAEDKDVFCVTRETADKHGLRSFSDLKKQNGKLVFGGPAEDK 182
Query: 151 GNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIH 210
L + N++ + ++ + V + P
Sbjct: 183 NRVVGLVGLK-NRYGVTFKEFKALDASGPL--VKGALKKGDVDVANLFSTDPDIEANGWV 239
Query: 211 YLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQD 268
L + + V+R + + L + + + KL+ K+D
Sbjct: 240 ILADP--KALIPAQHIVPVIRG--AKADTKVRKALAKLGGALTTHELARLNKLVDKEKKD 295
Query: 269 RQFVGRTMLRTH 280
V H
Sbjct: 296 PDEVAADWAADH 307
>gi|254690520|ref|ZP_05153774.1| Substrate-binding region of ABC-type glycine betaine transport
system [Brucella abortus bv. 6 str. 870]
gi|254695009|ref|ZP_05156837.1| Substrate-binding region of ABC-type glycine betaine transport
system [Brucella abortus bv. 3 str. Tulya]
gi|254696645|ref|ZP_05158473.1| Substrate-binding region of ABC-type glycine betaine transport
system [Brucella abortus bv. 2 str. 86/8/59]
gi|254701023|ref|ZP_05162851.1| Substrate-binding region of ABC-type glycine betaine transport
system [Brucella suis bv. 5 str. 513]
gi|254707092|ref|ZP_05168920.1| Substrate-binding region of ABC-type glycine betaine transport
system [Brucella pinnipedialis M163/99/10]
gi|254709367|ref|ZP_05171178.1| Substrate-binding region of ABC-type glycine betaine transport
system [Brucella pinnipedialis B2/94]
gi|254713212|ref|ZP_05175023.1| Substrate-binding region of ABC-type glycine betaine transport
system [Brucella ceti M644/93/1]
gi|254716434|ref|ZP_05178245.1| Substrate-binding region of ABC-type glycine betaine transport
system [Brucella ceti M13/05/1]
gi|254731553|ref|ZP_05190131.1| Substrate-binding region of ABC-type glycine betaine transport
system [Brucella abortus bv. 4 str. 292]
gi|256030890|ref|ZP_05444504.1| Substrate-binding region of ABC-type glycine betaine transport
system [Brucella pinnipedialis M292/94/1]
gi|256046012|ref|ZP_05448884.1| Substrate-binding region of ABC-type glycine betaine transport
system [Brucella melitensis bv. 1 str. Rev.1]
gi|256112725|ref|ZP_05453646.1| Substrate-binding region of ABC-type glycine betaine transport
system [Brucella melitensis bv. 3 str. Ether]
gi|256158923|ref|ZP_05456770.1| Substrate-binding region of ABC-type glycine betaine transport
system [Brucella ceti M490/95/1]
gi|256254294|ref|ZP_05459830.1| Substrate-binding region of ABC-type glycine betaine transport
system [Brucella ceti B1/94]
gi|256264734|ref|ZP_05467266.1| ABC transporter [Brucella melitensis bv. 2 str. 63/9]
gi|260546492|ref|ZP_05822232.1| ABC transporter [Brucella abortus NCTC 8038]
gi|260567144|ref|ZP_05837614.1| ABC transporter [Brucella suis bv. 4 str. 40]
gi|260756079|ref|ZP_05868427.1| ABC transporter [Brucella abortus bv. 6 str. 870]
gi|260885101|ref|ZP_05896715.1| ABC transporter [Brucella abortus bv. 9 str. C68]
gi|261759336|ref|ZP_06003045.1| ABC transporter [Brucella sp. F5/99]
gi|294851622|ref|ZP_06792295.1| osmoprotectant transport system substrate-binding protein [Brucella
sp. NVSL 07-0026]
gi|260096599|gb|EEW80475.1| ABC transporter [Brucella abortus NCTC 8038]
gi|260156662|gb|EEW91742.1| ABC transporter [Brucella suis bv. 4 str. 40]
gi|260676187|gb|EEX63008.1| ABC transporter [Brucella abortus bv. 6 str. 870]
gi|260874629|gb|EEX81698.1| ABC transporter [Brucella abortus bv. 9 str. C68]
gi|261739320|gb|EEY27316.1| ABC transporter [Brucella sp. F5/99]
gi|263095144|gb|EEZ18813.1| ABC transporter [Brucella melitensis bv. 2 str. 63/9]
gi|294820211|gb|EFG37210.1| osmoprotectant transport system substrate-binding protein [Brucella
sp. NVSL 07-0026]
gi|326408247|gb|ADZ65312.1| glycine betaine ABC transporter substrate-binding protein [Brucella
melitensis M28]
gi|326537962|gb|ADZ86177.1| Substrate-binding region of ABC-type glycine betaine transport
system [Brucella melitensis M5-90]
Length = 303
Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 51/306 (16%), Positives = 93/306 (30%), Gaps = 33/306 (10%)
Query: 1 MY-KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN- 58
M A+ LF+ S +A V + T+ + +L G KT
Sbjct: 1 MKGSAFALALFVGAIQFSSLAEAQ----VAVSSKIDTEGGVLGNIILTVLNAN-GIKTTD 55
Query: 59 -IKLLAVPVTFRSLKNKGIDIFMGYWYPS------------------LEKFIAPYLEEGS 99
I+L A PV +++ IDI+ Y + E +
Sbjct: 56 RIQLGATPVVRKAITAGEIDIYPEYTGNAAFFFNKADDPLWKDPAKAYETAKKLDYDANK 115
Query: 100 IKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
I + + + +AV + S D KY G + + L
Sbjct: 116 IVWLTPSPANNTWGIAVRKDVANENKLASLSDFGKYIAGGGKVVLAASSEFVNSAAALPA 175
Query: 159 IN-NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGE 216
F+LK +LI S + + I N + + + + L
Sbjct: 176 FQTAYGFTLKPDQLITLSGGDTAATIAAAANQTNGANAAMVYGTDGGIAPSGLVVLED-- 233
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGR 274
+ ++R + L K P I LLK + K + ++ + + + V
Sbjct: 234 DKHVQPVYQPAPIIREEVLKKDPKIEELLKPVFEKLDLTTLQDLNGRVQLGGEPAKAVAE 293
Query: 275 TMLRTH 280
L+ +
Sbjct: 294 DFLKKN 299
>gi|295397943|ref|ZP_06808000.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter [Aerococcus viridans ATCC 11563]
gi|294973828|gb|EFG49598.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter [Aerococcus viridans ATCC 11563]
Length = 115
Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 18/116 (15%), Positives = 49/116 (42%), Gaps = 2/116 (1%)
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+S A +++ + N V + W+PH + D ++ L + + G E +++ R
Sbjct: 2 SSTGAMIAELEQAINNEEDIVVVGWKPHWMFMDYDLKMLDDPKNVFGGYE-EIHSYAREG 60
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+ P +++ N + V + +M+ + + + + + + + + WL
Sbjct: 61 LKEDNPEAYKIIDNFYWEVEDMSSVMEELATD-VEPEEAADNWIEANRETVDGWLE 115
>gi|167902655|ref|ZP_02489860.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia pseudomallei NCTC 13177]
Length = 296
Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 44/294 (14%), Positives = 88/294 (29%), Gaps = 28/294 (9%)
Query: 11 LTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTF 68
L + A A + V A T+ + S +L+ G I L A P+
Sbjct: 1 LAVSLCAAAPGARAAGAVTVASKIDTEGNLLGNVISQVLKAH-GIAVVDKIGLGATPIVR 59
Query: 69 RSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKLVAENLQGA 110
R+L IDI+ Y + F I +A
Sbjct: 60 RALTTGEIDIYPEYTGNAAFFFNKADDPAWKNAAQGYALARQLDYAANRIVWLAPAPANN 119
Query: 111 KYMLAVNDVGFAL-GIKSYQDIAKYKKE-LGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
+ +AV + +K++ D K+ K+ + F LK
Sbjct: 120 TWGVAVLNSIAQARHLKTFSDFGKWVAAGGKVKLAASAEFVNSASALPSFEKAYGFKLKP 179
Query: 169 FRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
+++ S + + I+ + + + + + + L + +
Sbjct: 180 EQMLVLSGGDTAATIKAAAQQTDGVNAAMVYGTDGGIAATGLAVLDD--DKHVQPVYAPT 237
Query: 228 TVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++R L+ P I+ LK + + + I N + V + L+
Sbjct: 238 PIIREAVLNAHPQIADYLKPVFASLDLKTLQALNARIQINGEPAAGVAASYLKA 291
>gi|111226062|ref|YP_716856.1| putative amino acid ABC transporter amino acid-binding protein
[Frankia alni ACN14a]
gi|111153594|emb|CAJ65352.1| putative amino acid ABC transporter amino acid-binding protein
[Frankia alni ACN14a]
Length = 314
Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 36/277 (12%), Positives = 79/277 (28%), Gaps = 36/277 (12%)
Query: 28 VRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL-AVPVTFRSLKNKGIDIFMGYWYPS 86
+ AD G+T+ M + +LE+ GYK + + SL+ +D Y
Sbjct: 42 LTVADAGFTESKILAEMYAAVLEKA-GYKVERTSVQQTELAQSSLEKGTVDAMPQYVATY 100
Query: 87 LE-----------------------KFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+ + P + ++ + AV+
Sbjct: 101 ADLLNSKVHGPDAASVSSPDLQKSLAALRPLATGLGLTVLDPADAVDQNAFAVSKSFATQ 160
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
+ + ++ P E + + + Q
Sbjct: 161 H--NLKTLSDLGASGQTVKIAAGPECESRPFCQPGLEKTYGIKISEIVKTGVDTP---QT 215
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
+ ++ + L SD ++ L ++ ++ +V + L P IS
Sbjct: 216 KAAVKDGTAQLGLVLTTDATVSDYDLVVLTDDRKL--QNADNLVPIVNTKSL--TPQISA 271
Query: 244 LLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLR 278
L + + A E+ K + ++ V + LR
Sbjct: 272 ALNKLAPVLTTADLAELNKKVDAQREKPADVAKEYLR 308
>gi|299065888|emb|CBJ37067.1| putative ABC-type glycine betaine transport system,
Substrate-binding inner membrane component [Ralstonia
solanacearum CMR15]
Length = 520
Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 29/295 (9%), Positives = 67/295 (22%), Gaps = 30/295 (10%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL 62
+ L + L + A+ P+R +T+ + + + L
Sbjct: 13 RRLLAGMALGWLACGTLAWAEP--PLRIGSKRFTEAYVLGEVLTQAAAPHGPAEHVPGLG 70
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQ-------------- 108
+ F +L+N ID++ Y + + + + A L
Sbjct: 71 NTAIVFAALRNGSIDLYPDYLGTIAAEILHLPPAQAANPDQAALLADVNRALAPLGLGAG 130
Query: 109 ---GAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFS 165
G + A+ + + +A ++ ++
Sbjct: 131 VPLGFEDTYALAMREADAEREGIRTLADLAAHPALRLGLSHEFLGRADGWPALVRRYGLP 190
Query: 166 LKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEAS 225
+ L R + ++ L F
Sbjct: 191 QQPTGLDHGV-------AYDALRAGQTDAIDIYSTDARIRREHLRVLEDS--AHVFPRYD 241
Query: 226 VYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
+ R D + R + + + M + Q V L
Sbjct: 242 AVVLYRLDVPARHAAQWRAITALAGRIHRDEMVAMNAAVELEGQPFARVAARFLA 296
>gi|87309567|ref|ZP_01091701.1| ABC transporter permease protein [Blastopirellula marina DSM 3645]
gi|87287331|gb|EAQ79231.1| ABC transporter permease protein [Blastopirellula marina DSM 3645]
Length = 517
Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/278 (11%), Positives = 75/278 (26%), Gaps = 33/278 (11%)
Query: 18 YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL-AVPVTFRSLKNKGI 76
+ G+T+ LE+ +G K +K V FR+L+ I
Sbjct: 248 ASASQFDDRTYVIGGKGFTEQRILALAIQAELEQ-VGRKVELKEGIGSAVIFRALETGQI 306
Query: 77 DIFMGYWYPSLEKFI----------------APYLEEGSIKLVAENLQGAKYMLAV-NDV 119
D ++ Y + + + + Y+ + +
Sbjct: 307 DCYVDYSGTLWANVLGRDEFVSAPEMLIDLATELKADHQVYSLGTLGFRNDYVFVMKREK 366
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
LGIK+ D+AK+ +L A + + + +F +
Sbjct: 367 AAELGIKTLDDLAKHADKLNAVT---DIEFWERPEWARVRDVYQFDF------PQKQSMD 417
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+ + N+ V +++ + N+ + + ++ P
Sbjct: 418 ATLMYGAIANDKADVLVAFRTDGRIAANNLVEIADPARAL--PPYDAILLASKRLVED-P 474
Query: 240 NISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
L + S E + + + +
Sbjct: 475 VAVDQLIKLVNSISTDEMREANRAVDTDGTPVSAAAKR 512
>gi|108760529|ref|YP_628865.1| glycine betaine/L-proline ABC transporter permease and
substrate-binding protein [Myxococcus xanthus DK 1622]
gi|108464409|gb|ABF89594.1| glycine betaine/L-proline ABC transporter, permease and
substrate-binding protein [Myxococcus xanthus DK 1622]
Length = 498
Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 28/286 (9%), Positives = 71/286 (24%), Gaps = 27/286 (9%)
Query: 9 LFLTTFSISYARDADSCTP-VRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVP 65
+ L + A + P VR +T+ + L G + +L
Sbjct: 1 MLLLVGACGGASSSGDGVPQVRVGSKKFTESVILGEAVTQ-LARSTGARVTHRRELGGTA 59
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFI-----------APYLEEGSIKLVAENLQGAKYML 114
V + +L+ +D++ Y ++ + L E +++ Y L
Sbjct: 60 VLWEALRRGELDVYPEYTGTLRQELLSGRHLPDDAALRAALAESGLRMSEPLGFNNTYAL 119
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
+ + + I+ + + + + ++ + +
Sbjct: 120 GMKE--AEAERLGIRRISDLRAHPSLRFGFSNEFMDRADGWPALRDSYRLPQRDV----- 172
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDY 234
R + + + + L + R D
Sbjct: 173 -RGLDHDLAYRGMESGSLQLTDLYSTDAEIEAYGLRVLEDDLRHF--PAYDAVLLYRDDL 229
Query: 235 LDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
+ P + + S A ++ L + V L
Sbjct: 230 EARAPEALAAMLRLEGHVSEADMVKLNALARLERVSEGRVASGFLA 275
>gi|330816845|ref|YP_004360550.1| ABC glycine betaine/choline transporter, periplasmic ligand binding
protein [Burkholderia gladioli BSR3]
gi|327369238|gb|AEA60594.1| ABC glycine betaine/choline transporter, periplasmic ligand binding
protein [Burkholderia gladioli BSR3]
Length = 320
Score = 93.7 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 41/294 (13%), Positives = 90/294 (30%), Gaps = 28/294 (9%)
Query: 11 LTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTF 68
+T + A +A + + A T+ + + + +L+ G I L A P+
Sbjct: 25 VTLGAGLAAGNAQAADSITVASKIDTEGSLLGNLIAQVLKSH-GLTVVDKISLGATPIVR 83
Query: 69 RSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IKLVAENLQGA 110
++L + IDI+ Y + F + +A
Sbjct: 84 KALTSGEIDIYPEYTGNAAFFFNKTDDPVWKDAAKGYAAARQLDYSANHLVWLAPAPANN 143
Query: 111 KYMLAVNDVGF-ALGIKSYQDIAKYKKE-LGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
+ +AV +KS+ D ++ K+ + F LK
Sbjct: 144 TWGIAVLGPLAGQQHLKSFSDFGRWIAAGGKVKLAASAEFVNSASALPSFEKTYGFKLKP 203
Query: 169 FR-LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
+ L+ + + + + + + + + + L +++ +
Sbjct: 204 DQLLVLSGGDTAATIRAAAAQTDGVNAAMVYGTDGAIAASGLVLLEDDKKV--QPVYAPA 261
Query: 228 TVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
V+R L P I+ LK + + + I N + V T L+
Sbjct: 262 PVIREAVLKAHPQIADWLKPVFASLDLKTLQTLNSRIQINGEPAAHVAATYLKA 315
>gi|86356141|ref|YP_468033.1| glycine betaine ABC transporter, substrate binding protein
[Rhizobium etli CFN 42]
gi|86280243|gb|ABC89306.1| probable glycine betaine ABC transporter, substrate binding protein
[Rhizobium etli CFN 42]
gi|327194589|gb|EGE61440.1| glycine betaine ABC transporter, substrate binding protein
[Rhizobium etli CNPAF512]
Length = 302
Score = 93.7 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 51/304 (16%), Positives = 96/304 (31%), Gaps = 32/304 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-- 58
M K LA+ + L+ F+ + AD V + T+ + ++ LE G KT
Sbjct: 1 MLKKLALAVSLSAFAAGAVQAAD----VVVSSKIDTEGTLLGNVIALALEAN-GIKTQDR 55
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEG------------------SI 100
I L A PV +++ IDI+ Y + F I
Sbjct: 56 IALGATPVVRKAITAGEIDIYPEYTGNAGFFFNKADDAAWKNNDQGYELAKKLDYDANKI 115
Query: 101 KLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI 159
+ + + LAV + + +K+ D K+ G + L
Sbjct: 116 VWLTPSPANNTWALAVRNDVASPNKLKTMSDFGKWVAGGGTAKLAASSEFVNSAGALPAF 175
Query: 160 N-NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEE 217
F LK +++ S + + I+ N + + + L +
Sbjct: 176 QTTYGFQLKPDQMVVLSGGDTAATIKAAADQTNGVNTAMVYGTDGAIEAAELTVLEDDKG 235
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
+ + ++R L P I +L I S ++ I + + + V
Sbjct: 236 V--QQVYAPTPIIREAVLKANPKIEEILSPIFKSLSADELRKLNAKIQVDGEPAKSVAEA 293
Query: 276 MLRT 279
L+
Sbjct: 294 YLKE 297
>gi|297200027|ref|ZP_06917424.1| ABC transporter substrate-binding protein [Streptomyces sviceus
ATCC 29083]
gi|197710500|gb|EDY54534.1| ABC transporter substrate-binding protein [Streptomyces sviceus
ATCC 29083]
Length = 321
Score = 93.7 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 27/283 (9%), Positives = 66/283 (23%), Gaps = 30/283 (10%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGID 77
+ + +T+ A+ + + G + ++K+ D
Sbjct: 41 GEPLKGADLTVTSKEFTEQLILGAIMGIAFQAA-GADVLDRTGIQGSVGAREAVKSGDAD 99
Query: 78 IFMGYWYPSLEKF----------------IAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
Y + + + + + + + Y LA+N F
Sbjct: 100 GMYEYTGTAWITYQGHSEPIADPQEQWAAVRKADLDNGLTWLPKAPLNNTYALAMNQAAF 159
Query: 122 ALG---IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
S K + + M S+ L +
Sbjct: 160 RKYRTRTLSDVAALAKKDPGAVTLCVESEFANRADGLPGMEKAYGMSIPAKNLTQMDTGI 219
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
I + +N+ + + + + S L K
Sbjct: 220 ----IYTQVAKGSCRYGEVFTTDGRIKSMNLAVMRDDRKFF--PNYNAAPEINSKSLKKW 273
Query: 239 PNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
P I+ +L + + E+ + +D V ++
Sbjct: 274 PAIAEVLDPVTKRLDNTVARELNAKVDVAGEDPHEVALDWMKA 316
>gi|17547235|ref|NP_520637.1| lipoprotein transmembrane [Ralstonia solanacearum GMI1000]
gi|17429537|emb|CAD16223.1| putative abc type transporter : periplasmic glycine betaine /
choline-binding lipoprotein and permease components
transmembrane [Ralstonia solanacearum GMI1000]
Length = 520
Score = 93.7 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 29/297 (9%), Positives = 69/297 (23%), Gaps = 30/297 (10%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL 62
+ L + L + A++ P+R +T+ + + + L
Sbjct: 13 RRLLAWMALGWLACGTLAWAEA--PLRIGSKRFTEAYVLGEVLTQAAAPHGPAEHVPGLG 70
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQ-------------- 108
+ F +L++ ID++ Y + + + + A L
Sbjct: 71 NTAIVFAALRSGSIDLYPDYLGTIAAEILHLPPAQAANPDQAALLADVNRALAPLGLGAG 130
Query: 109 ---GAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFS 165
G + A+ + + +A ++ ++
Sbjct: 131 VPLGFEDTYALAMREADAEREGIRTLADLAAHPALRLGLSHEFLGRADGWPALVRRYGLP 190
Query: 166 LKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEAS 225
+ L R + ++ L F
Sbjct: 191 QQPTGLDHGV-------AYDALRAGQTDAIDIYSTDARIRREHLRVLEDS--AHVFPRYD 241
Query: 226 VYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ R D + R + + + M + Q V L H
Sbjct: 242 AVVLYRLDVPARHAAQWRAIMALAGRIHRDEMVAMNAAVELEGQPFARVAARFLAGH 298
>gi|323214097|gb|EFZ98860.1| putative ABC transporter periplasmic binding protein [Salmonella
enterica subsp. enterica serovar Montevideo str. 556152]
Length = 226
Score = 93.7 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 16/201 (7%), Positives = 53/201 (26%), Gaps = 16/201 (7%)
Query: 89 KFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSY--------QDIAKYKKELGA 140
+ + + + Y A+ + + + + +
Sbjct: 28 DTVKRLDAKLGLVWLKPADMNNTYAFAMQRKRAESENITTISQMVAKIEQVRQNDPDHNW 87
Query: 141 KIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEP 200
+ + + + + L ++ + + R+ + L +
Sbjct: 88 MLGLDLEFAGRSDGMKPLQQAYQMQLDRPQIRQMDPG----LVYNAVRDGLVDAGLVYTT 143
Query: 201 HPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEM 258
++ L + +V VVR + L+ P + L + + + + +
Sbjct: 144 DGRVKGFDLKVLEDDKGFF--PSYAVTPVVRKEVLEANPGLDDALNTLSGLLNNDVISTL 201
Query: 259 MKLILNNKQDRQFVGRTMLRT 279
+ + Q V L+
Sbjct: 202 NAQVDIEHRTPQQVAHQFLQD 222
>gi|254469465|ref|ZP_05082870.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudovibrio sp. JE062]
gi|211961300|gb|EEA96495.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudovibrio sp. JE062]
Length = 302
Score = 93.7 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 38/295 (12%), Positives = 83/295 (28%), Gaps = 28/295 (9%)
Query: 10 FLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPVT 67
L ++ A + + + T+ + ++ LE+ G ++L V
Sbjct: 6 ILAAIGMTGALTVAAHAEIVVSSKIDTEGGLLGNIIALALEDA-GLPVERRLQLGGTQVV 64
Query: 68 FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAEN----LQGAKYMLAVNDVGFAL 123
+L IDI+ Y + L G K L A
Sbjct: 65 REALLADQIDIYPEYTGNAAYFHNEADSNIWKDAKAGYARAAELDGEKNGLVWLQPAPAN 124
Query: 124 G---------IKSYQDIAKYKKELGAKIYGIE-------PGNEGNQRILDMINNNKFSLK 167
+ + ++A G + + M F L
Sbjct: 125 NTWAIAVTGALANQNNLATMSDFGAWVAKGGDVKLAASTEFVSSPAVLPAMQEAYGFKLS 184
Query: 168 GFRLIEASELASFSQIRRDQR-NNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV 226
+ + S + + I+ R + +++ + + + + +
Sbjct: 185 PDQTVVLSGGDTAATIQAAARGTSGVNAAMAYGTDGGVAATGLVVMTDDKGV--QPVYEP 242
Query: 227 YTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
V+RS+ L + P ++ +L I +A E+ I + V + L
Sbjct: 243 APVIRSETLKEYPQVAEVLNPIFSGLDLATLQELNGRIQVGGEPAAAVAKDYLTK 297
>gi|215425005|ref|ZP_03422924.1| amino acid ABC transporter, amino acid-binding protein, putative
[Mycobacterium tuberculosis T92]
gi|260202962|ref|ZP_05770453.1| amino acid ABC transporter, amino acid-binding protein, putative
[Mycobacterium tuberculosis K85]
Length = 313
Score = 93.7 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 32/307 (10%), Positives = 80/307 (26%), Gaps = 33/307 (10%)
Query: 1 MYKILAVCL--FLTTFSISYARDAD-------SCTPVRFADTGWTDIAATTAMTSVILEE 51
+ + T ++ +AD S + + + + + +L+
Sbjct: 5 LRRATVAAAVWLATVCLVASCANADPLGSATGSVKSIVVGSGDFPESQVIAEIYAQVLQA 64
Query: 52 ILGYKT--NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQG 109
G+ + + + +LK+ ID+ Y L F + E +
Sbjct: 65 N-GFDVGRRLGIGSRETYIPALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVELELYKR 123
Query: 110 AKYMLAVNDVGFALGI------------KSYQDIAKYKKELGAKIYGIEP-GNEGNQRIL 156
L++ A + + IA + +
Sbjct: 124 LPGDLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTRPSGLP 183
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ + + + ++ + R + ++ L E
Sbjct: 184 GLRHKYSLDIAPGNFVTINDGGGAVTV-RALVEGTATAANLFSTSAAIPQNHLVVLEDPE 242
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNN-KQDRQFVG 273
G ++ +V S + +L + K + A E+ + N D
Sbjct: 243 HNFLAG--NIVPLVNSRKKSDH--LKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAA 298
Query: 274 RTMLRTH 280
R +R +
Sbjct: 299 RKWVRDN 305
>gi|215413687|ref|ZP_03422355.1| amino acid ABC transporter, amino acid-binding protein, putative
[Mycobacterium tuberculosis 94_M4241A]
gi|215448103|ref|ZP_03434855.1| amino acid ABC transporter, amino acid-binding protein, putative
[Mycobacterium tuberculosis T85]
gi|294995329|ref|ZP_06801020.1| amino acid ABC transporter, amino acid-binding protein, putative
[Mycobacterium tuberculosis 210]
Length = 313
Score = 93.7 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 32/307 (10%), Positives = 80/307 (26%), Gaps = 33/307 (10%)
Query: 1 MYKILAVCL--FLTTFSISYARDAD-------SCTPVRFADTGWTDIAATTAMTSVILEE 51
+ + T ++ +AD S + + + + + +L+
Sbjct: 5 LRRATVAAAVRLATVCLVASCANADPLGSATGSVKSIVVGSGDFPESQVIAEIYAQVLQA 64
Query: 52 ILGYKT--NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQG 109
G+ + + + +LK+ ID+ Y L F + E +
Sbjct: 65 N-GFDVGRRLGIGSRETYIPALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVELELYKR 123
Query: 110 AKYMLAVNDVGFALGI------------KSYQDIAKYKKELGAKIYGIEP-GNEGNQRIL 156
L++ A + + IA + +
Sbjct: 124 LPGDLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTRPSGLP 183
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ + + + ++ + R + ++ L E
Sbjct: 184 GLRHKYSLDIAPGNFVTINDGGGAVTV-RALVEGTATAANLFSTSAAIPQNHLVVLEDPE 242
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNN-KQDRQFVG 273
G ++ +V S + +L + K + A E+ + N D
Sbjct: 243 HNFLAG--NIVPLVNSRKKSDH--LKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAA 298
Query: 274 RTMLRTH 280
R +R +
Sbjct: 299 RKWVRDN 305
>gi|227505881|ref|ZP_03935930.1| ABC superfamily ATP binding cassette transporter, binding protein
[Corynebacterium striatum ATCC 6940]
gi|227197509|gb|EEI77557.1| ABC superfamily ATP binding cassette transporter, binding protein
[Corynebacterium striatum ATCC 6940]
Length = 325
Score = 93.7 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 37/305 (12%), Positives = 72/305 (23%), Gaps = 37/305 (12%)
Query: 5 LAVCLFLTTFSIS-------YARDADSCTPVRFADTGWTDIAATTAMTSVILEE-ILGYK 56
+ L + S + + A + + + + + LE+ +
Sbjct: 27 VTSAALLASCSSADPTAEPGASESAGDSKTIVIGTANFPESEILGQLWAATLEDAGFDVE 86
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQG------- 109
+ + + ++L+ +DI Y + + A + V E L+G
Sbjct: 87 VKSGIGSREIYMKALEEGTVDIVPEYTGNLAQFYKAKLPSGADEQKVYEALEGVLPEALA 146
Query: 110 --------AKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINN 161
+K V + K E K+ G E +
Sbjct: 147 AGAFAPAESKDAYHVTPEVAKKYKLASLADLKNLDE--IKLAGNPELAERPYGPRGLSQT 204
Query: 162 NKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYL----PGGEE 217
F + S+ I V + PI +
Sbjct: 205 YGADEDKFTMHAISDGGGPLTI-AALLEGEANVADIYTTSPILDRDGKEVKLVRLEDPQN 263
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLIL-NNKQDRQFVGR 274
+ +V V RS D L M N K + + R
Sbjct: 264 L--VAPQNVVPVYRS--ADVPQKAVEALDKFDGNLKTEDLVAMNLRNSGNEKAEPAAIAR 319
Query: 275 TMLRT 279
+
Sbjct: 320 DFIDA 324
>gi|317123456|ref|YP_004097568.1| substrate-binding region of ABC-type glycine betaine transporter
[Intrasporangium calvum DSM 43043]
gi|315587544|gb|ADU46841.1| Substrate-binding region of ABC-type glycine betaine transport
system [Intrasporangium calvum DSM 43043]
Length = 307
Score = 93.7 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 36/279 (12%), Positives = 76/279 (27%), Gaps = 29/279 (10%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKN 73
+ V + + A + + LE G + ++++
Sbjct: 35 AGTNAGTGGASSVTIGSADFPESALLGEIYAQALEAK-GVTVQRQFNIGNRETYLKAIEG 93
Query: 74 KGIDIFMGYWY------------PSLEKFIAPYLEE--GSIKLVAENLQGAKYMLAVNDV 119
+DI Y + ++ + G + ++A++ K + V
Sbjct: 94 GEVDILPEYTGSLTNYFDKTVTATNPDEVYDALKSKLPGGLTVLAKSTAEDKNSMVVTKE 153
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGN-EGNQRILDMINNNKFSLKGFRLIEASELA 178
S + I P Q ++ + K FR + +
Sbjct: 154 TADA--WSLKAIPDLVAHQDELSIAAPPEFRTRQQGLVGLKEVYNLEPKEFRPLASQ--- 208
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+N + P + L E FG +V +VR D
Sbjct: 209 ---ATVEALKNGQVKAANIFSTDPSIAANGFVVLEDPE--LLFGSDNVVPLVRDDVAGSV 263
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTML 277
+ K +M+K ++ +K+D V + L
Sbjct: 264 QAPLDAVSA-KLDTTALADMVKQVVVDKKDASVVAKEWL 301
>gi|229489100|ref|ZP_04382966.1| ABC amino acid transporter, substrate binding component
[Rhodococcus erythropolis SK121]
gi|229324604|gb|EEN90359.1| ABC amino acid transporter, substrate binding component
[Rhodococcus erythropolis SK121]
Length = 302
Score = 93.7 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 29/309 (9%), Positives = 80/309 (25%), Gaps = 40/309 (12%)
Query: 1 MYKILAVCLFLTTFSISYARD-----------ADSCTPVRFADTGWTDIAATTAMTSVIL 49
M K+L L T + + + + + + + L
Sbjct: 1 MKKVLIAALVGVTAVALSSCGIGKDPLATDGGGSAEGAIVIGSADFPESQLIATIYAEAL 60
Query: 50 EEILGYKT--NIKLLAVPVTFRSLKNKGIDIFMGYWY--------------PSLEKFIAP 93
G + + + + +L++ ID+ Y
Sbjct: 61 RAN-GIDVTEKLNIGSRELYVPALRDGSIDLIPEYSGALLQYLDSKTTATASDEVSAEID 119
Query: 94 YLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQ 153
+ + + K +LAV S + + + G P + +
Sbjct: 120 AKLPKGLVALEPSPAEDKDVLAVKQETAEKY--SLETVEDLVQHADELTLGGPPEWKTRE 177
Query: 154 RILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLP 213
+ + + L + + + V + P N+ L
Sbjct: 178 NGVAGLKTK-YGLTFREFLALDAGGPLTL--NALLSGQIQVADVFSTDPAMRSENLVALE 234
Query: 214 GGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQF 271
+ + ++ ++ L ++ +L + + EM + + + D
Sbjct: 235 DTKHLFL--AENITPIINE--LKARDDVRSVLAGVSAALTTEDLIEMNQRVA-DLDDMSD 289
Query: 272 VGRTMLRTH 280
+ + L+ +
Sbjct: 290 IAQDWLQKN 298
>gi|215405814|ref|ZP_03417995.1| amino acid ABC transporter, amino acid-binding protein, putative
[Mycobacterium tuberculosis 02_1987]
gi|289747599|ref|ZP_06506977.1| osmoprotectant binding lipoprotein PROX [Mycobacterium tuberculosis
02_1987]
gi|289759921|ref|ZP_06519299.1| osmoprotectant binding lipoprotein PROX [Mycobacterium tuberculosis
T85]
gi|298527232|ref|ZP_07014641.1| osmoprotectant (glycine betaine/carnitine/choline/L-proline)
binding lipoprotein proX [Mycobacterium tuberculosis
94_M4241A]
gi|289688127|gb|EFD55615.1| osmoprotectant binding lipoprotein PROX [Mycobacterium tuberculosis
02_1987]
gi|289715485|gb|EFD79497.1| osmoprotectant binding lipoprotein PROX [Mycobacterium tuberculosis
T85]
gi|298497026|gb|EFI32320.1| osmoprotectant (glycine betaine/carnitine/choline/L-proline)
binding lipoprotein proX [Mycobacterium tuberculosis
94_M4241A]
gi|326905597|gb|EGE52530.1| osmoprotectant proX [Mycobacterium tuberculosis W-148]
Length = 315
Score = 93.7 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 31/296 (10%), Positives = 78/296 (26%), Gaps = 26/296 (8%)
Query: 5 LAVCLFLTTFSIS--YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
LA + + + + S + + + + + +L+ G+ +
Sbjct: 18 LATVCLVASCANADPLGSATGSVKSIVVGSGDFPESQVIAEIYAQVLQAN-GFDVGRRLG 76
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ + +LK+ ID+ Y L F + E + L++
Sbjct: 77 IGSRETYIPALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVELELYKRLPGDLSILTPS 136
Query: 121 FALGI------------KSYQDIAKYKKELGAKIYGIEP-GNEGNQRILDMINNNKFSLK 167
A + + IA + + + + +
Sbjct: 137 PASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTRPSGLPGLRHKYSLDIA 196
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
+ ++ + R + ++ L E G ++
Sbjct: 197 PGNFVTINDGGGAVTV-RALVEGTATAANLFSTSAAIPQNHLVVLEDPEHNFLAG--NIV 253
Query: 228 TVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNN-KQDRQFVGRTMLRTH 280
+V S + +L + K + A E+ + N D R +R +
Sbjct: 254 PLVNSRKKSDH--LKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAARKWVRDN 307
>gi|291453830|ref|ZP_06593220.1| ABC transporter substrate-binding protein [Streptomyces albus
J1074]
gi|291356779|gb|EFE83681.1| ABC transporter substrate-binding protein [Streptomyces albus
J1074]
Length = 315
Score = 93.7 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 34/279 (12%), Positives = 74/279 (26%), Gaps = 29/279 (10%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGIDIF 79
+ +T+ A+ + + G + ++K+ D
Sbjct: 35 PLEGAKLTVTSKEFTEQLVLGAIMGIAFQAA-GASVLDRTGIQGSIGAREAVKSGDADAM 93
Query: 80 MGYWYPSLEKFI----------------APYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
Y S ++ + I + Y LAVN
Sbjct: 94 YEYTGTSWITYLGNSEPIVDPQEQWEAVRKADKANGITWLPPARLNNTYALAVNPATEKK 153
Query: 124 G-IKSYQDIAKYKKELGAKIYGI--EPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
IK+ +A+ K + + M ++ + + +
Sbjct: 154 YGIKNLSQVAELSKRDPGAVTLCVESEFASRQDGLPGMQKKYGMNIPASNIKKMDGGIVY 213
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+++ A + L++ L + +V + + L+K P
Sbjct: 214 TELSS---GRSCAFGEVFTTDGRIKALDLTVLDDDKNFF--PNYNVAPEINTKALEKYPA 268
Query: 241 ISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
I +L I K A+ E+ + QD V +
Sbjct: 269 IPEVLAPITAKLDNAIAQELNSKVAVQGQDPHTVALEWM 307
>gi|309786246|ref|ZP_07680874.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Shigella dysenteriae 1617]
gi|308925991|gb|EFP71470.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Shigella dysenteriae 1617]
Length = 364
Score = 93.4 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 26/208 (12%), Positives = 54/208 (25%), Gaps = 12/208 (5%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKLLAV 64
+ L + A V + T+ T + S LE LGY +
Sbjct: 52 GITATLISTQTFAADLPGKGITVNPVQSTITEETFQTLLVSRALE-KLGYTVNKPSEVDY 110
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
V + SL + W P + + + GA ++
Sbjct: 111 NVGYTSLASGDATFTAVNWTPLQDNMYEAAGGDKKFYREGVFVNGAAQGYLIDKKTADQY 170
Query: 125 IKSYQ---------DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
+ + + A + G PG I + + + + +
Sbjct: 171 KITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGWGCEGAINHQLAAYELT-NTVTHNQGN 229
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPI 203
+ + P + +W P+ +
Sbjct: 230 YAVMMADTISRYKEGKPVFYYTWTPYWV 257
>gi|310639291|ref|YP_003944050.1| substrate-binding region of ABC-type glycine betaine transport
system [Ketogulonicigenium vulgare Y25]
gi|308752867|gb|ADO44011.1| substrate-binding region of ABC-type glycine betaine transport
system [Ketogulonicigenium vulgare Y25]
Length = 299
Score = 93.4 bits (230), Expect = 4e-17, Method: Composition-based stats.
Identities = 40/305 (13%), Positives = 84/305 (27%), Gaps = 35/305 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-- 58
M LA + + A V + T+ + +LE G T
Sbjct: 1 MRLALASLALIGLTGAAAA-------DVVVSSKIDTEGGVLGNIILAVLENA-GIPTQDR 52
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPS-------LEKFIAPYLEEGSI----------- 100
++L P+ ++L IDI+ Y + E + I
Sbjct: 53 VQLGGTPIMRQALLAGEIDIYPEYTGNAAYFFDRADEPIWQDADQAYQIAKELDFAANQI 112
Query: 101 KLVAENLQGAKYMLAVNDVGFALGIKSYQDIAK--YKKELGAKIYGIEPGNEGNQRILDM 158
+ + +A+ + + + K+ +
Sbjct: 113 VWLTPAPANNTWGIALRQDVASANGITTFSDFSAFIRDGGTVKLAAAAEFVNSPPALPAF 172
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIP-AVFLSWEPHPINSDLNIHYLPGGEE 217
F+L +LI S + + I+ + + + + + L +
Sbjct: 173 QTAYDFTLTADQLIVLSGGDTAATIQAAAQQTSGANAAMVYGTDGGIAFSGLQVLED--D 230
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
+ ++RS LD+ P I LL + S+ + + + V R
Sbjct: 231 LHVQPVYEPAPIIRSAVLDEYPQIETLLDPVFSALSLETLQMLNGRVQVEGVPAEDVARD 290
Query: 276 MLRTH 280
L +
Sbjct: 291 WLTEN 295
>gi|320104863|ref|YP_004180454.1| Substrate-binding region of ABC-type glycine betaine transport
system [Isosphaera pallida ATCC 43644]
gi|319752145|gb|ADV63905.1| Substrate-binding region of ABC-type glycine betaine transport
system [Isosphaera pallida ATCC 43644]
Length = 550
Score = 93.4 bits (230), Expect = 4e-17, Method: Composition-based stats.
Identities = 35/288 (12%), Positives = 70/288 (24%), Gaps = 33/288 (11%)
Query: 9 LFLTTFSISYARDADSCTPV-RFADTGWTDIAATTAMTSVILEEILGYKTNIKLL-AVPV 66
L + S D + PV +T+ + LE+ G + V
Sbjct: 249 LLRAAQATSAEPDPAADRPVLTIGAKNFTEQYILARVIEDTLEQA-GTRVERAEGLGSTV 307
Query: 67 TFRSLKNKGIDIFMGYWYPSLEKFIA----------------PYLEEGSIKLVAENLQGA 110
F L + ID+ + Y + + ++
Sbjct: 308 LFDGLASGAIDVAVDYSGTLWVNILKRDDRPGRREVIDILARELPTRYGVTVIGPLGFEN 367
Query: 111 KYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
Y LA+ IA + I+G + G + ++ K R
Sbjct: 368 AYALAMRRQQAQR--LGVASIADLTRHAPDLIFGSDYEFLGRPEWQAVRDHYHLRFKDRR 425
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
E + + R V ++ ++ L + +V
Sbjct: 426 TFEPTF------LYDAARRGEADVISAFTTDGRIDAFDLVTLEDPRQA--IPPYDALLLV 477
Query: 231 RSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNK-QDRQFVGRT 275
++ P L+ + V + Q Q +
Sbjct: 478 SRRVANR-PEWVEALRRLVNTIPVEAMRRANAQVDRAGSQTAQAIASA 524
>gi|29830051|ref|NP_824685.1| ABC transporter substrate-binding protein [Streptomyces avermitilis
MA-4680]
gi|29607161|dbj|BAC71220.1| putative ABC transporter substrate-binding protein [Streptomyces
avermitilis MA-4680]
Length = 312
Score = 93.4 bits (230), Expect = 4e-17, Method: Composition-based stats.
Identities = 34/269 (12%), Positives = 73/269 (27%), Gaps = 24/269 (8%)
Query: 28 VRFADTGWTDIAATTAMTSVILEEILGY--KTNIKLLAVPVTFRSLKNKGIDIFMGYWY- 84
V +T+ + + LE G L + +L+ ID+ Y
Sbjct: 46 VIIGTANFTENQVLGHLYAAALEAA-GVRTTVRPNLGTREILIPALRGGDIDLLPEYQGA 104
Query: 85 ------PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG-----FALGIKSYQDIAK 133
P ++ + LQ Y +A + +A
Sbjct: 105 LLHYLAPKATATEEGAMQNALTVALPSGLQVLPYGMAEDSDAFVVTRATAKKYGLSSLAD 164
Query: 134 YKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPA 193
KK+ G + G + Q + + + + ++ ++ R
Sbjct: 165 LKKQNGELVIGAAAEVKKRQVGVVGLK-DVYGVEFKEFKSLDSSGPL--VKGALRKGDVD 221
Query: 194 VFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFS 251
V + + L + V ++ D + R L + +
Sbjct: 222 VANLFTTDTDIQANDWVVLSDPRNL--VPGQHVVPLIADRKADST--VRRALAELGNVLT 277
Query: 252 VALENEMMKLILNNKQDRQFVGRTMLRTH 280
A E+ + + +K+D + V H
Sbjct: 278 TAQLTELNRQVDKDKKDPEDVANAYAEQH 306
>gi|118619516|ref|YP_907848.1| osmoprotectant (glycine betaine/carnitine/choline/L-proline)
binding lipoprotein ProX [Mycobacterium ulcerans Agy99]
gi|118571626|gb|ABL06377.1| osmoprotectant (glycine betaine/carnitine/choline/L-proline)
binding lipoprotein ProX [Mycobacterium ulcerans Agy99]
Length = 315
Score = 93.4 bits (230), Expect = 4e-17, Method: Composition-based stats.
Identities = 34/302 (11%), Positives = 79/302 (26%), Gaps = 31/302 (10%)
Query: 4 ILAVCLFLTTFSISYARDAD-----SCT--PVRFADTGWTDIAATTAMTSVILEEILGYK 56
+ A + S++ +D SC + + + + + L G++
Sbjct: 12 LAAALCVVMVCSVAACGSSDPFGTTSCDINSIVVGSGDFPESQIVAELYAQALRAN-GFE 70
Query: 57 T--NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
+ + + +LK+ ID+ Y L F + E + L
Sbjct: 71 VGMRLGIGSRETYIPALKDHSIDLVPEYIGNLLLYFDPHATVTLLDAVELELYRRLPGDL 130
Query: 115 AV------------NDVGFALGIKSYQDIAKYKKELGAKIYGIEP-GNEGNQRILDMINN 161
+V G + + IA + + +
Sbjct: 131 SVLTPSPASDTDTVTVTSATAGKWNLKTIADLAPHSANLRFAAPSAFQNRPSGLRGLREK 190
Query: 162 NKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
+ + ++ + R + + P ++ L E
Sbjct: 191 YGLDISPQNFVTINDGGGAVTV-RALLDGTVDAADIFSTSPAIRQNHLVVLADPEHNFRA 249
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQ-DRQFVGRTMLR 278
G ++ ++ S I +L + K + E+ + N D R L
Sbjct: 250 G--NIVPLLNSQKKSD--RIKDVLDAVSAKLTTEGVAELNASVSGNGGIDPNEAARKWLH 305
Query: 279 TH 280
+
Sbjct: 306 DN 307
>gi|282863906|ref|ZP_06272963.1| Substrate-binding region of ABC-type glycine betaine transport
system [Streptomyces sp. ACTE]
gi|282560984|gb|EFB66529.1| Substrate-binding region of ABC-type glycine betaine transport
system [Streptomyces sp. ACTE]
Length = 310
Score = 93.4 bits (230), Expect = 4e-17, Method: Composition-based stats.
Identities = 40/315 (12%), Positives = 86/315 (27%), Gaps = 47/315 (14%)
Query: 2 YKILAVCLFLTTFSISYARDADS-----------------CTPVRFADTGWTDIAATTAM 44
+ L LF + A + V +T+ +
Sbjct: 3 RRTLLGGLFAAATVPALASCSSGITSLDGGGSSGGGGGSSEGGVTIGTANFTENQVLGHL 62
Query: 45 TSVILEEILGYK--TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE------ 96
+ L + G K L + +LK ID+ Y L A
Sbjct: 63 YAAAL-DAAGVKNTVRPNLGTREILIPALKGGDIDLLPEYQGALLHYLDAKATATEEGEM 121
Query: 97 --------EGSIKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEP 147
++++ AV G+KS D+AK+ +L I
Sbjct: 122 QNALAMALPRGLQILPYGRAEDSDAFAVTRETAREYGLKSLADLAKHNGKLV--IGAAPE 179
Query: 148 GNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDL 207
+ + + + K F+ +++S ++ + V +
Sbjct: 180 VKKRAVGSVGLKDVYGVEFKEFKSLDSSGP----LVKGALKKGDVDVANLFTTDTDIVAE 235
Query: 208 NIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNN 265
L + + V ++ D + + L + + E+ +L+ +
Sbjct: 236 GWVVLTDPKNL--IPGQHVVPLIADRKADST--VRKALARLGGLLTTKDLTELNRLVDKD 291
Query: 266 KQDRQFVGRTMLRTH 280
++D + V H
Sbjct: 292 RKDPEDVAHDWAAKH 306
>gi|241202905|ref|YP_002974001.1| Substrate-binding region of ABC-type glycine betaine transport
system [Rhizobium leguminosarum bv. trifolii WSM1325]
gi|240856795|gb|ACS54462.1| Substrate-binding region of ABC-type glycine betaine transport
system [Rhizobium leguminosarum bv. trifolii WSM1325]
Length = 302
Score = 93.4 bits (230), Expect = 4e-17, Method: Composition-based stats.
Identities = 53/304 (17%), Positives = 97/304 (31%), Gaps = 32/304 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-- 58
M K LA+ + L+ F++ A AD V + T+ + ++ LE G KT
Sbjct: 1 MLKKLALAVSLSAFAVGAAHAAD----VVVSSKIDTEGTLLGNVIALALEAN-GIKTQDR 55
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------I 100
I L A PV +++ IDI+ Y + F I
Sbjct: 56 IALGATPVVRKAITAGEIDIYPEYTGNAGFFFNKADDAAWKNIDQGYELAKKLDYDANKI 115
Query: 101 KLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI 159
+ + + LAV +KS D K+ GA + L
Sbjct: 116 VWLTPSPANNTWALAVRSDVAGPNKLKSLTDFGKWVAGGGAAKLAASAEFVNSAGALPAF 175
Query: 160 NN-NKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEE 217
F LK +++ S + + I+ N + + + L +
Sbjct: 176 QTTYGFQLKPDQMVVLSGGDTAATIKAAADQTNGVNTAMVYGTDGAIEAAELTVLEDDKN 235
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
+ + ++R + L P I +L I + ++ I + + + V
Sbjct: 236 VQQ--VYAPTPIIREEVLKANPKIEEVLSPIFKSLTADELRKLNAKIQVDGEPAKSVAEA 293
Query: 276 MLRT 279
L+
Sbjct: 294 YLKE 297
>gi|31794929|ref|NP_857422.1| osmoprotectant (glycine betaine/carnitine/choline/L-proline)
binding lipoprotein PROX [Mycobacterium bovis AF2122/97]
gi|121639673|ref|YP_979897.1| putative osmoprotectant (glycine
betaine/carnitine/choline/l-proline) binding lipoprotein
proX [Mycobacterium bovis BCG str. Pasteur 1173P2]
gi|224992169|ref|YP_002646858.1| putative osmoprotectant (glycine
betaine/carnitine/choline/L-proline) binding lipoprotein
[Mycobacterium bovis BCG str. Tokyo 172]
gi|31620527|emb|CAD95971.1| POSSIBLE OSMOPROTECTANT (GLYCINE
BETAINE/CARNITINE/CHOLINE/L-PROLINE) BINDING LIPOPROTEIN
PROX [Mycobacterium bovis AF2122/97]
gi|121495321|emb|CAL73808.1| Possible osmoprotectant (glycine
betaine/carnitine/choline/l-proline) binding lipoprotein
proX [Mycobacterium bovis BCG str. Pasteur 1173P2]
gi|224775284|dbj|BAH28090.1| putative osmoprotectant (glycine
betaine/carnitine/choline/L-proline) binding lipoprotein
[Mycobacterium bovis BCG str. Tokyo 172]
Length = 315
Score = 93.0 bits (229), Expect = 5e-17, Method: Composition-based stats.
Identities = 33/302 (10%), Positives = 80/302 (26%), Gaps = 31/302 (10%)
Query: 4 ILAVCLFLTTFSISYARDAD-------SCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
+ A T ++ +AD S + + + + + +L+ G+
Sbjct: 12 VAAAVWLATVCLVASCANADPLGSATGSVKSIVVGSGDFPESQVIAEIYAQVLQAN-GFD 70
Query: 57 T--NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
+ + + +LK+ ID+ Y L F + E + L
Sbjct: 71 VGRRLGIGSRETYIPALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVELELYKRLPGDL 130
Query: 115 AVNDVGFALGI------------KSYQDIAKYKKELGAKIYGIEP-GNEGNQRILDMINN 161
++ A + + IA + + + +
Sbjct: 131 SILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSVFQTRPSGLPGLRHK 190
Query: 162 NKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
+ + ++ + R + ++ L E
Sbjct: 191 YSLDIAPGNFVTINDGGGAVTV-RALVEGTATAANLFSTSAAIPQNHLVVLEDPEHNFLA 249
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNN-KQDRQFVGRTMLR 278
G ++ +V S + +L + K + A E+ + N D R +R
Sbjct: 250 G--NIVPLVNSRKKSDH--LKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAARKWVR 305
Query: 279 TH 280
+
Sbjct: 306 DN 307
>gi|54025048|ref|YP_119290.1| putative transporter [Nocardia farcinica IFM 10152]
gi|54016556|dbj|BAD57926.1| putative transporter [Nocardia farcinica IFM 10152]
Length = 322
Score = 93.0 bits (229), Expect = 5e-17, Method: Composition-based stats.
Identities = 32/279 (11%), Positives = 66/279 (23%), Gaps = 32/279 (11%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPVTFRSLKNKGIDIFMG 81
V +T+ + L G + + + IDI
Sbjct: 42 DGVAVTVGSKDFTEQNILGYLIEFALSAA-GADVRDLTNIQGSNSLRDAQLHGQIDIAYD 100
Query: 82 YWYPSLEKFIAPYLE-----------------EGSIKLVAENLQGAKYMLAVNDVGFALG 124
Y ++ E + A Y L +
Sbjct: 101 YTGTGWINYLGNETPIPDERAQFDQLRAADLAEHGMLWTAMAPMNNTYALVTSRRTQQET 160
Query: 125 ----IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ Y + + A G E N + R + +
Sbjct: 161 GVVTLSDYARLIERDPAAAATCVGTE-FNVRQDGFPGLARKYGIDAGRVRKQIVQDALVY 219
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
R +V L++ L + + V+R+D+ + P
Sbjct: 220 QATADATRCRFGSVA---ATDGRIPALDLVLLHDDLGFF--PKYNAALVMRADFAEAHPQ 274
Query: 241 ISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
I+ L+ I + E+ + + ++ V R +
Sbjct: 275 IATLMAPISARLTNEAVTELNRQVDVEGREPAEVARDWM 313
>gi|116250283|ref|YP_766121.1| solute-binding component of ABC transporter [Rhizobium
leguminosarum bv. viciae 3841]
gi|115254931|emb|CAK06005.1| putative solute-binding component of ABC transporter [Rhizobium
leguminosarum bv. viciae 3841]
Length = 302
Score = 93.0 bits (229), Expect = 5e-17, Method: Composition-based stats.
Identities = 52/304 (17%), Positives = 97/304 (31%), Gaps = 32/304 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-- 58
M K LA+ + L+ F++ A AD + + T+ + ++ LE G KT
Sbjct: 1 MLKKLALAVSLSAFAVGAAHAAD----IVVSSKIDTEGTLLGNVIALALEAN-GIKTQDR 55
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEG------------------SI 100
I L A PV +++ IDI+ Y + F I
Sbjct: 56 IALGATPVVRKAITAGEIDIYPEYTGNAGFFFNKADDAAWKNIDQGYELAKKLDYDANKI 115
Query: 101 KLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI 159
+ + + LAV +KS D K+ GA + L
Sbjct: 116 VWLTPSPANNTWALAVRSDVAGPNKLKSLTDFGKWVAGGGAAKLAASAEFVNSAGALPAF 175
Query: 160 N-NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEE 217
F LK +++ S + + I+ N + + + L +
Sbjct: 176 QTTYGFQLKPDQMVVLSGGDTAATIKAAADQTNGVNTAMVYGTDGAIEAAELTVLEDDKN 235
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
+ + ++R + L P I +L I + ++ I + + + V
Sbjct: 236 V--QQVYAPTPIIREEVLKANPKIEEVLSPIFKSLTADELRKLNAKIQVDGEPAKSVAEG 293
Query: 276 MLRT 279
L+
Sbjct: 294 YLKE 297
>gi|167970920|ref|ZP_02553197.1| osmoprotectant (glycine betaine/carnitine/choline/L-proline)
transport system substrate binding lipoprotein proX
[Mycobacterium tuberculosis H37Ra]
gi|254552873|ref|ZP_05143320.1| osmoprotectant proX [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
gi|297636440|ref|ZP_06954220.1| osmoprotectant proX [Mycobacterium tuberculosis KZN 4207]
gi|297733434|ref|ZP_06962552.1| osmoprotectant proX [Mycobacterium tuberculosis KZN R506]
gi|313660765|ref|ZP_07817645.1| osmoprotectant proX [Mycobacterium tuberculosis KZN V2475]
Length = 313
Score = 93.0 bits (229), Expect = 6e-17, Method: Composition-based stats.
Identities = 32/307 (10%), Positives = 80/307 (26%), Gaps = 33/307 (10%)
Query: 1 MYKILAVCL--FLTTFSISYARDAD-------SCTPVRFADTGWTDIAATTAMTSVILEE 51
+ + T ++ +AD S + + + + + +L+
Sbjct: 5 LRRATVAAAVWLATVCLVASCANADPLGSATGSVKSIVVGSGDFPESQVIAEIYAQVLQA 64
Query: 52 ILGYKT--NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQG 109
G+ + + + +LK+ ID+ Y L F + E +
Sbjct: 65 N-GFDVGRRLGIGSRETYILALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVELELYKR 123
Query: 110 AKYMLAVNDVGFALGI------------KSYQDIAKYKKELGAKIYGIEP-GNEGNQRIL 156
L++ A + + IA + +
Sbjct: 124 LPGDLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTRPSGLP 183
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ + + + ++ + R + ++ L E
Sbjct: 184 GLRHKYSLDIAPGNFVTINDGGGAVTV-RALVEGTATAANLFSTSAAIPQNHLVVLEDPE 242
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNN-KQDRQFVG 273
G ++ +V S + +L + K + A E+ + N D
Sbjct: 243 HNFLAG--NIVPLVNSRKKSDH--LKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAA 298
Query: 274 RTMLRTH 280
R +R +
Sbjct: 299 RKWVRDN 305
>gi|218670546|ref|ZP_03520217.1| glycine betaine ABC transporter, substrate binding protein
[Rhizobium etli GR56]
Length = 302
Score = 93.0 bits (229), Expect = 6e-17, Method: Composition-based stats.
Identities = 51/304 (16%), Positives = 95/304 (31%), Gaps = 32/304 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-- 58
M K LA+ + L+ F+ + AD V + T+ + ++ LE G KT
Sbjct: 1 MLKKLALAVSLSAFAAGAVQAAD----VVVSSKIDTEGTLLGNVIALALEAN-GIKTQDR 55
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEG------------------SI 100
I L A PV +++ IDI+ Y + F I
Sbjct: 56 IALGATPVVRKAITAGEIDIYPEYTGNAGFFFNKADDAAWKNNDQGYELAKKLDYDANKI 115
Query: 101 KLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI 159
+ + + LAV + +K+ D K+ G + L
Sbjct: 116 VWLTPSPANNTWALAVRNDVAEPNKLKTMSDFGKWVAGGGTAKLAASSEFVNSAGALPAF 175
Query: 160 N-NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEE 217
F LK +++ S + + I+ N + + + L +
Sbjct: 176 QTTYGFQLKPDQMVVLSGGDTAATIKAAADQTNGVNTAMVYGTDGAIEAAELTVLEDDKG 235
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
+ + ++R L P I +L I S ++ I + + + V
Sbjct: 236 V--QQVYAPTAIIREAVLKANPKIEEILSPIFKSLSADELRKLNAKIQVDGEPAKSVAEA 293
Query: 276 MLRT 279
L+
Sbjct: 294 YLKE 297
>gi|297559380|ref|YP_003678354.1| glycine/betaine ABC transporter substrate-binding protein
[Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
gi|296843828|gb|ADH65848.1| Substrate-binding region of ABC-type glycine betaine transport
system [Nocardiopsis dassonvillei subsp. dassonvillei
DSM 43111]
Length = 300
Score = 93.0 bits (229), Expect = 6e-17, Method: Composition-based stats.
Identities = 25/271 (9%), Positives = 75/271 (27%), Gaps = 28/271 (10%)
Query: 26 TPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--LLAVPVTFRSLKNKGIDIFMGYW 83
V + + + +E G + + + + + V + +++ + +F Y
Sbjct: 37 DAVVIGSADFPESTLLAEIYGRAMEAE-GVEVDYQLGIGSREVYYSQIESGNLSVFPEYN 95
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL----- 138
L S + + L + D A S ++ +E
Sbjct: 96 GAILAYLDENAPTGSSEETNQRVTEALPEGLEILDSSSAENKDSVTVTSEVAEEHGLASL 155
Query: 139 --------GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
+ G Q ++ + + F + + + +
Sbjct: 156 EDLAGAAGELTLGGPPEFETRQQGVVGLADVYGVEFGEF------RSLEVALLTQALLDG 209
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK- 249
+ P + + L E + G ++ +V + +D+ L +
Sbjct: 210 DIQAANLFTTDPQITANDFVVLEDPENLF--GAQNITPLVNGEQVDET--ARGALNAVSA 265
Query: 250 -FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+ ++ + ++ ++ V + L
Sbjct: 266 ALTTEALTQLNERVVIGNENAADVAQEWLEQ 296
>gi|167894261|ref|ZP_02481663.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia pseudomallei 7894]
Length = 293
Score = 93.0 bits (229), Expect = 6e-17, Method: Composition-based stats.
Identities = 41/277 (14%), Positives = 83/277 (29%), Gaps = 28/277 (10%)
Query: 28 VRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGIDIFMGYWYP 85
V A T+ + S +L+ G I L A P+ R+L IDI+ Y
Sbjct: 15 VTVASKIDTEGNLLGNVISQVLKAH-GIAVVDKIGLGATPIVRRALTTGEIDIYPEYTGN 73
Query: 86 SLEKFIAPYLEEGS------------------IKLVAENLQGAKYMLAVNDVGFAL-GIK 126
+ F I +A + +AV + +K
Sbjct: 74 AAFFFNKADDPAWKNAAQGYALARQLDYAANRIVWLAPAPANNTWGVAVLNSIAQARHLK 133
Query: 127 SYQDIAKYKKE-LGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
++ D K+ K+ + F LK +++ S + + I+
Sbjct: 134 TFSDFGKWVAAGGKVKLAASAEFVNSASALPSFEKAYGFKLKPEQMLVLSGGDTAATIKA 193
Query: 186 DQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
+ + + + + + L + + ++R L+ P I+
Sbjct: 194 AAQQTDGVNAAMVYGTDGGIAATGLAVLDD--DKHVQPVYAPTPIIREAVLNAHPQIADY 251
Query: 245 LKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
LK + + + I N + V + L+
Sbjct: 252 LKPVFASLDLKTLQALNARIQINGEPAAGVAASYLKA 288
>gi|118464087|ref|YP_879605.1| quaternary amine ABC transporter substrate-binding protein
[Mycobacterium avium 104]
gi|118165374|gb|ABK66271.1| ABC transporter, quaternary amine uptake transporter (QAT) family
protein, substrate-binding protein [Mycobacterium avium
104]
Length = 302
Score = 93.0 bits (229), Expect = 6e-17, Method: Composition-based stats.
Identities = 33/298 (11%), Positives = 80/298 (26%), Gaps = 29/298 (9%)
Query: 7 VCLFLTTFSISYARDAD-------SCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-- 57
L T F ++ ++D S + + + + + L+ G+
Sbjct: 2 AVLLTTMFVVAACSNSDPLGAQVRSPDSIVVGSGDFPESQIIAEIYAQALQAN-GFDVGK 60
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWY-------PSLEKFIAPYLEEGSIKLVAENL--- 107
+ + + ++K+ ID+ Y P+ +E+ + + +L
Sbjct: 61 RMGIGSRETYIPAIKDHSIDLVPEYIGNLLLYFEPASSATTLDAVEQELHRRLPADLSIL 120
Query: 108 --QGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEP-GNEGNQRILDMINNNKF 164
A V+ A + + I +G + +
Sbjct: 121 TPAPATDTDTVSVTSQAANSWNLRTIGDLAPHSADVRFGAPSAFATRPAGLPGLRQKYGL 180
Query: 165 SLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEA 224
+K + + + R + P ++ L E G
Sbjct: 181 DIKPGNFVAIDDGGGAVTV-RALLEGRVNAANIFTTSPAIPQHHLVALDDPEHNFIAG-- 237
Query: 225 SVYTVVR-SDYLDKCPNISRLLKNIKFSVALENEMMKLILNN-KQDRQFVGRTMLRTH 280
+V +V ++ + + K + + + N D R LR +
Sbjct: 238 NVVPLVNSQKRSERLKLVLDAVSA-KLTTPGVAGLNAAVSGNSGVDPDQAARNWLRDN 294
>gi|53723407|ref|YP_102823.1| ABC transporter periplasmic glycine/betaine-binding protein
[Burkholderia mallei ATCC 23344]
gi|67640523|ref|ZP_00439326.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia mallei GB8 horse 4]
gi|76809480|ref|YP_333529.1| ABC transporter periplasmic substrate-binding protein [Burkholderia
pseudomallei 1710b]
gi|121600863|ref|YP_992904.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia mallei SAVP1]
gi|124385402|ref|YP_001026239.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia mallei NCTC 10229]
gi|126449267|ref|YP_001080485.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia mallei NCTC 10247]
gi|126452444|ref|YP_001066260.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia pseudomallei 1106a]
gi|134277715|ref|ZP_01764430.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia pseudomallei 305]
gi|167002521|ref|ZP_02268311.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia mallei PRL-20]
gi|167824154|ref|ZP_02455625.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia pseudomallei 9]
gi|167845692|ref|ZP_02471200.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia pseudomallei B7210]
gi|167918923|ref|ZP_02506014.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia pseudomallei BCC215]
gi|217421345|ref|ZP_03452849.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia pseudomallei 576]
gi|226197192|ref|ZP_03792769.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia pseudomallei Pakistan 9]
gi|237812273|ref|YP_002896724.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia pseudomallei MSHR346]
gi|242315238|ref|ZP_04814254.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia pseudomallei 1106b]
gi|254178586|ref|ZP_04885241.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia mallei ATCC 10399]
gi|254179786|ref|ZP_04886385.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia pseudomallei 1655]
gi|254197936|ref|ZP_04904358.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia pseudomallei S13]
gi|254199766|ref|ZP_04906132.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia mallei FMH]
gi|254206090|ref|ZP_04912442.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia mallei JHU]
gi|254259822|ref|ZP_04950876.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia pseudomallei 1710a]
gi|254358462|ref|ZP_04974735.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia mallei 2002721280]
gi|52426830|gb|AAU47423.1| ABC transporter, periplasmic glycine/betaine-binding protein,
putative [Burkholderia mallei ATCC 23344]
gi|76578933|gb|ABA48408.1| ABC transporter, periplasmic substrate-binding protein
[Burkholderia pseudomallei 1710b]
gi|121229673|gb|ABM52191.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia mallei SAVP1]
gi|124293422|gb|ABN02691.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia mallei NCTC 10229]
gi|126226086|gb|ABN89626.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia pseudomallei 1106a]
gi|126242137|gb|ABO05230.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia mallei NCTC 10247]
gi|134251365|gb|EBA51444.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia pseudomallei 305]
gi|147749362|gb|EDK56436.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia mallei FMH]
gi|147753533|gb|EDK60598.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia mallei JHU]
gi|148027589|gb|EDK85610.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia mallei 2002721280]
gi|160699625|gb|EDP89595.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia mallei ATCC 10399]
gi|169654677|gb|EDS87370.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia pseudomallei S13]
gi|184210326|gb|EDU07369.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia pseudomallei 1655]
gi|217395087|gb|EEC35105.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia pseudomallei 576]
gi|225930571|gb|EEH26581.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia pseudomallei Pakistan 9]
gi|237504234|gb|ACQ96552.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia pseudomallei MSHR346]
gi|238521251|gb|EEP84704.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia mallei GB8 horse 4]
gi|242138477|gb|EES24879.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia pseudomallei 1106b]
gi|243061796|gb|EES43982.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia mallei PRL-20]
gi|254218511|gb|EET07895.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia pseudomallei 1710a]
Length = 312
Score = 93.0 bits (229), Expect = 6e-17, Method: Composition-based stats.
Identities = 41/277 (14%), Positives = 83/277 (29%), Gaps = 28/277 (10%)
Query: 28 VRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGIDIFMGYWYP 85
V A T+ + S +L+ G I L A P+ R+L IDI+ Y
Sbjct: 34 VTVASKIDTEGNLLGNVISQVLKAH-GIAVVDKIGLGATPIVRRALTTGEIDIYPEYTGN 92
Query: 86 SLEKFIAPYLEEGS------------------IKLVAENLQGAKYMLAVNDVGFAL-GIK 126
+ F I +A + +AV + +K
Sbjct: 93 AAFFFNKADDPAWKNAAQGYALARQLDYAANRIVWLAPAPANNTWGVAVLNSIAQARHLK 152
Query: 127 SYQDIAKYKKE-LGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
++ D K+ K+ + F LK +++ S + + I+
Sbjct: 153 TFSDFGKWVAAGGKVKLAASAEFVNSASALPSFEKAYGFKLKPEQMLVLSGGDTAATIKA 212
Query: 186 DQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
+ + + + + + L + + ++R L+ P I+
Sbjct: 213 AAQQTDGVNAAMVYGTDGGIAATGLAVLDD--DKHVQPVYAPTPIIREAVLNAHPQIADY 270
Query: 245 LKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
LK + + + I N + V + L+
Sbjct: 271 LKPVFASLDLKTLQALNARIQINGEPAAGVAASYLKA 307
>gi|148257318|ref|YP_001241903.1| putative glycine betaine/carnitine/choline ABC transporter
permease/substrate binding protein [Bradyrhizobium sp.
BTAi1]
gi|146409491|gb|ABQ37997.1| putative glycine betaine/carnitine/choline ABC transporter
(permease and substrate binding protein) [Bradyrhizobium
sp. BTAi1]
Length = 515
Score = 92.6 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 30/291 (10%), Positives = 71/291 (24%), Gaps = 34/291 (11%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP 65
+ + S +T+ +A+ S L+ T+ L
Sbjct: 234 IALMVGASLLPSLGSSPARYA---IGAKTFTEQYVLSALISERLQAAGLSATSRAGLGSS 290
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE---------------EGSIKLVAENLQGA 110
V + +LKN ID ++ Y + I L+ E
Sbjct: 291 VIYEALKNGDIDTYVDYSGTLWANQFHHREQMPRAALLAALQQDLARDKITLLGELGFEN 350
Query: 111 KYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
Y L + + + + + + + + + R
Sbjct: 351 AYALVMPRQKATA--LGIRTVEDLARRSRDMSIAGDYEFFSRPEWAALRDAYGLAFRTQR 408
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
++ + + V + + + ++ L +V
Sbjct: 409 QMQPDF------MYAAVASGEVDVIAGYTSDGLIAKYDLVVLDDP--KHAIPPYDAILLV 460
Query: 231 RSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQD--RQFVGRTML 277
+ + L+ + + +A + + D Q V R L
Sbjct: 461 SPKRAEDH-ALQDALRPLLGRIDIATMQQANLRASGSDADSSPQAVAR-WL 509
>gi|190890185|ref|YP_001976727.1| glycine betaine ABC transporter substrate-binding protein
[Rhizobium etli CIAT 652]
gi|190695464|gb|ACE89549.1| probable glycine betaine ABC transporter, substrate-binding protein
[Rhizobium etli CIAT 652]
Length = 302
Score = 92.6 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 50/304 (16%), Positives = 96/304 (31%), Gaps = 32/304 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-- 58
M K LA+ + L+ F+ + AD V + T+ + ++ LE G KT
Sbjct: 1 MLKKLALAVSLSAFAAGAVQAAD----VVVSSKIDTEGTLLGNVIALALEAN-GIKTQDR 55
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEG------------------SI 100
I L A PV +++ IDI+ Y + F I
Sbjct: 56 IALGATPVVRKAITAGEIDIYPEYTGNAGFFFNKADDAAWKNNDQGYELAKKLDYDANKI 115
Query: 101 KLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI 159
+ + + LAV + + +K+ D K+ G + L
Sbjct: 116 VWLTPSPANNTWALAVRNDVASPNKLKTMSDFGKWVAGGGTAKLAASSEFVNSAGALPAF 175
Query: 160 N-NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEE 217
F LK +++ S + + I+ N + + + L +
Sbjct: 176 QTTYGFQLKPDQMVVLSGGDTAATIKAAADQTNGVNTAMVYGTDGAIEAAELTVLEDDKG 235
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
+ + ++R L P I +L I + ++ I + + + V
Sbjct: 236 V--QQVYAPTPIIREAVLKANPKIEEILSPIFKSLNADELRKLNAKIQVDGEPAKSVAEA 293
Query: 276 MLRT 279
L+
Sbjct: 294 YLKE 297
>gi|215432738|ref|ZP_03430657.1| amino acid ABC transporter, amino acid-binding protein, putative
[Mycobacterium tuberculosis EAS054]
gi|254366304|ref|ZP_04982348.1| osmoprotectant (glycine betaine/carnitine/choline/L-proline)
binding lipoprotein proX [Mycobacterium tuberculosis
str. Haarlem]
gi|260198807|ref|ZP_05766298.1| amino acid ABC transporter, amino acid-binding protein, putative
[Mycobacterium tuberculosis T46]
gi|289441195|ref|ZP_06430939.1| osmoprotectant proX [Mycobacterium tuberculosis T46]
gi|289572005|ref|ZP_06452232.1| osmoprotectant proX [Mycobacterium tuberculosis T17]
gi|289572409|ref|ZP_06452636.1| osmoprotectant proX [Mycobacterium tuberculosis K85]
gi|289748278|ref|ZP_06507656.1| osmoprotectant proX [Mycobacterium tuberculosis T92]
gi|289755890|ref|ZP_06515268.1| osmoprotectant binding lipoprotein PROX [Mycobacterium tuberculosis
EAS054]
gi|134151816|gb|EBA43861.1| osmoprotectant (glycine betaine/carnitine/choline/L-proline)
binding lipoprotein proX [Mycobacterium tuberculosis
str. Haarlem]
gi|289414114|gb|EFD11354.1| osmoprotectant proX [Mycobacterium tuberculosis T46]
gi|289536840|gb|EFD41418.1| osmoprotectant proX [Mycobacterium tuberculosis K85]
gi|289545759|gb|EFD49407.1| osmoprotectant proX [Mycobacterium tuberculosis T17]
gi|289688865|gb|EFD56294.1| osmoprotectant proX [Mycobacterium tuberculosis T92]
gi|289696477|gb|EFD63906.1| osmoprotectant binding lipoprotein PROX [Mycobacterium tuberculosis
EAS054]
gi|323717624|gb|EGB26826.1| osmoprotectant proX [Mycobacterium tuberculosis CDC1551A]
Length = 315
Score = 92.6 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 33/302 (10%), Positives = 80/302 (26%), Gaps = 31/302 (10%)
Query: 4 ILAVCLFLTTFSISYARDAD-------SCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
+ A T ++ +AD S + + + + + +L+ G+
Sbjct: 12 VAAAVWLATVCLVASCANADPLGSATGSVKSIVVGSGDFPESQVIAEIYAQVLQAN-GFD 70
Query: 57 T--NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
+ + + +LK+ ID+ Y L F + E + L
Sbjct: 71 VGRRLGIGSRETYIPALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVELELYKRLPGDL 130
Query: 115 AVNDVGFALGI------------KSYQDIAKYKKELGAKIYGIEP-GNEGNQRILDMINN 161
++ A + + IA + + + +
Sbjct: 131 SILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTRPSGLPGLRHK 190
Query: 162 NKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
+ + ++ + R + ++ L E
Sbjct: 191 YSLDIAPGNFVTINDGGGAVTV-RALVEGTATAANLFSTSAAIPQNHLVVLEDPEHNFLA 249
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNN-KQDRQFVGRTMLR 278
G ++ +V S + +L + K + A E+ + N D R +R
Sbjct: 250 G--NIVPLVNSRKKSDH--LKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAARKWVR 305
Query: 279 TH 280
+
Sbjct: 306 DN 307
>gi|332654299|ref|ZP_08420043.1| proline/glycine betaine ABC transporter permease [Ruminococcaceae
bacterium D16]
gi|332517385|gb|EGJ46990.1| proline/glycine betaine ABC transporter permease [Ruminococcaceae
bacterium D16]
Length = 508
Score = 92.6 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 32/273 (11%), Positives = 81/273 (29%), Gaps = 36/273 (13%)
Query: 35 WTDIAATTAMTSVILEEILGYKTNIK-LLAVPVTFRSLKNKGIDIFMGYWYPS------- 86
++++ +M ++E+ IK + F ++ + + Y +
Sbjct: 238 FSEVQLVNSMIKQLVEDRYDLTVTIKDQMTAVNNFNAMTGQDHSCDLMYTWDGTLLTTIM 297
Query: 87 -------------LEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAK 133
+ E +L+ + Y + V + I+
Sbjct: 298 GLDTTDIPDGQTLYDFVNEKMNTEYDARLMGKIGVNNTYAIGVTQDVMDTYHPT--KISD 355
Query: 134 YKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI-RRDQRNNIP 192
G +G E + + ++ + L A +
Sbjct: 356 LVPVAGELRFGAESDFFTSAGSMK----YDPFVQFYGLNFAKATPVDIMLKYTAIEQGAY 411
Query: 193 AVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD----YLDKCPNISRLLK-- 246
V + + +N + L ++ F + +VR+D + ++ P++ L
Sbjct: 412 DVMVVYATDGLNIRAGLTVLED--DLHFFPDYYGTILVRNDVFERFEEQAPDLEETLSLL 469
Query: 247 NIKFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
N KF+ L +++ + ++ V R L
Sbjct: 470 NGKFTDQLMSQLTYRVDVEQEPVDQVARDFLVE 502
>gi|309807548|ref|ZP_07701503.1| ABC transporter, substrate-binding protein, QAT family
[Lactobacillus iners LactinV 01V1-a]
gi|308169215|gb|EFO71278.1| ABC transporter, substrate-binding protein, QAT family
[Lactobacillus iners LactinV 01V1-a]
Length = 499
Score = 92.6 bits (228), Expect = 7e-17, Method: Composition-based stats.
Identities = 32/294 (10%), Positives = 83/294 (28%), Gaps = 36/294 (12%)
Query: 1 MYKILAVCLFLTTFSISY------ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
M+ I+ + + + ++ + A + M ++LE+
Sbjct: 204 MFLIIVLLFGIVSLGAYSLNNIKTVANSAKSEQIIIASKDDSQFDIIANMYKILLEKNKK 263
Query: 55 YKTNIKLLAVP-VTFRSLKNKGIDIFMG----------------YWYPSLEKFIAPYLEE 97
Y + L+N IDI+ L ++ L +
Sbjct: 264 YHVTCSRRKDDRQILKELRNGNIDIYPEETRKVFSLIDNSDKKFANIDELYRYTRDILYK 323
Query: 98 GSIKLVAEN-LQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
+ + ++A + I D+ KYK +L ++ + +
Sbjct: 324 QDLIYMTPMAYHNNYVLIADKEFAKQNKITKISDLQKYKSKLVVGMF--KDFAYSSNGYE 381
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ + K + A Q R + + P N+ L
Sbjct: 382 GLKDVYKLDFPKMSVTTAD------QCYEKLRKRQVNLIAATSNDPEIKKNNLLILND-- 433
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQD 268
+ F V ++ + K + ++++ + K + ++ + ++
Sbjct: 434 DKYYFVPYQVAPIITKRFAKKHHQVVKIIEKLAGKITDDEMIQLETQVKLEHKN 487
>gi|183985270|ref|YP_001853561.1| osmoprotectant (glycine betaine/carnitine/choline/L-proline)
binding lipoprotein ProX [Mycobacterium marinum M]
gi|183178596|gb|ACC43706.1| osmoprotectant (glycine betaine/carnitine/choline/L-proline)
binding lipoprotein ProX [Mycobacterium marinum M]
Length = 315
Score = 92.6 bits (228), Expect = 7e-17, Method: Composition-based stats.
Identities = 34/302 (11%), Positives = 79/302 (26%), Gaps = 31/302 (10%)
Query: 4 ILAVCLFLTTFSISYARDADSCTP-------VRFADTGWTDIAATTAMTSVILEEILGYK 56
+ A +T S++ +D + + + + + L G++
Sbjct: 12 LAAALCVVTVCSVAACGSSDPFGTTGCDVNSIVVGSGDFPESQIVAELYAQALRVN-GFE 70
Query: 57 T--NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
+ + + +LK+ ID+ Y L F + E + L
Sbjct: 71 VGMRLGIGSRETYIPALKDHSIDLVPEYIGNLLLYFDPHATVTLLDAVELELYRRLPGDL 130
Query: 115 AV------------NDVGFALGIKSYQDIAKYKKELGAKIYGIEP-GNEGNQRILDMINN 161
+V G G + + IA + + +
Sbjct: 131 SVLTPSPASDTDTVTVTGATAGKWNLKTIADLAPHSANLRFAAPSAFQNRPSGLRGLREK 190
Query: 162 NKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
+ + ++ + R + + P ++ L E
Sbjct: 191 YGLDISPQNFVSINDGGGAVTV-RALLDGTVDAADIFSTSPAIRQNHLVVLADPEHNFRA 249
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQ-DRQFVGRTMLR 278
G ++ ++ S I +L + K + E+ + N D R L
Sbjct: 250 G--NIVPLLNSQKKSD--RIKDVLDAVSAKLTTEGVAELNASVSGNGGIDPDEAARKWLH 305
Query: 279 TH 280
+
Sbjct: 306 DN 307
>gi|170782049|ref|YP_001710381.1| putative substrate binding transport protein [Clavibacter
michiganensis subsp. sepedonicus]
gi|169156617|emb|CAQ01769.1| putative substrate binding transport protein [Clavibacter
michiganensis subsp. sepedonicus]
Length = 335
Score = 92.6 bits (228), Expect = 7e-17, Method: Composition-based stats.
Identities = 23/279 (8%), Positives = 63/279 (22%), Gaps = 25/279 (8%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPVTFRSLKNKGIDIFMG 81
+ + +T+ +VI + G+ + + + G D+
Sbjct: 54 AGAHLTVTSKNFTEQLILGK-IAVIAAKAAGFDVTDQTNVPGSVPARELMTSHGADMTWE 112
Query: 82 YWYPSLEKFI----------------APYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
Y + ++ + + Y LA+
Sbjct: 113 YTGTAWLSYLGEPKGIPDQRAQYEAVRDADAANGLTWLTPAPLNNTYALAIRSEEADRLG 172
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA--SFSQI 183
+ K N + + ++ + ++ +
Sbjct: 173 ITKLSQIKDLPVDERTFCVEAEFNSRSDGLSPLLETYGIPRGSADGVPDGNVSIFDTGAV 232
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
+ L + L ++ V+ S L + P +
Sbjct: 233 YTATDRGTCEFGEVFTTDGRIDKLGLTILQDDLGFF--PAYNLAPVLDSATLAEYPGLQD 290
Query: 244 LLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ I + EM + + ++ V + H
Sbjct: 291 VFDRISPVITDDALREMNLRVDDQGEEPADVAFQFMVDH 329
>gi|25026721|ref|NP_736775.1| hypothetical protein CE0165 [Corynebacterium efficiens YS-314]
gi|259508144|ref|ZP_05751044.1| glycine betaine/choline-binding protein of an ABC superfamily ATP
binding cassette transporter [Corynebacterium efficiens
YS-314]
gi|23492000|dbj|BAC16975.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
gi|259164233|gb|EEW48787.1| glycine betaine/choline-binding protein of an ABC superfamily ATP
binding cassette transporter [Corynebacterium efficiens
YS-314]
Length = 303
Score = 92.2 bits (227), Expect = 9e-17, Method: Composition-based stats.
Identities = 32/308 (10%), Positives = 73/308 (23%), Gaps = 38/308 (12%)
Query: 1 MYKIL---AVCLFLTTFSISYARDAD----------SCTPVRFADTGWTDIAATTAMTSV 47
M +L + + + + + + + +
Sbjct: 1 MKTLLRTGITAVIASALLVGCGSSDTLEETATGTDTASETIVVGSQDYYSSEIIAELYAQ 60
Query: 48 ILEEILGYKTNIKL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEE-------- 97
LE Y V ++N +D+F Y P L+ +
Sbjct: 61 ALEAA-DYDVQRDFRIGQREVYMGEVENGSVDLFPEYTGPLLQYWEPDTDARLPDEVYSE 119
Query: 98 ------GSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEG 151
S+ ++ + V I G + G E
Sbjct: 120 LVDAAPDSLTILDAAPATDQDAYVVTRELSEQY--DLSSIPDLANIPGPLVLGANSEAET 177
Query: 152 NQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHY 211
+ N GF IE + R+ + + P +D ++
Sbjct: 178 RPNGPIGLRENYGIEAGFTPIEDGGGPLT---IKALRDGDVQFAIVYTADPSIADNDLVV 234
Query: 212 LPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQF 271
L + + + V V ++ +I + + + +N++
Sbjct: 235 LEDPDGMFL--ASQVVPVASDALDEQAQDIINEISA-ALTSEELLALNSQSVNDQAPAAT 291
Query: 272 VGRTMLRT 279
+ L
Sbjct: 292 IATQWLED 299
>gi|83954418|ref|ZP_00963138.1| ABC transporter, periplasmic substrate-binding protein
[Sulfitobacter sp. NAS-14.1]
gi|83841455|gb|EAP80625.1| ABC transporter, periplasmic substrate-binding protein
[Sulfitobacter sp. NAS-14.1]
Length = 304
Score = 92.2 bits (227), Expect = 9e-17, Method: Composition-based stats.
Identities = 38/302 (12%), Positives = 89/302 (29%), Gaps = 30/302 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-- 58
M L + + T +++ A A + + + T+ + ++ LE+ G
Sbjct: 1 MKNSLRITVSAATLTVALASAAAAD--ITVSSKIDTEGGLLGNVIALALEDA-GLPVERR 57
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------I 100
++L V +L + IDI+ Y + F + +
Sbjct: 58 LQLGGTQVVREALLSGQIDIYPEYTGNAAFFFNEADSDVWKDAEAAHARAAELDAAQNDV 117
Query: 101 KLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKE--LGAKIYGIEPGNEGNQRILDM 158
+ + +AV + K+ + M
Sbjct: 118 TWLTSAPANNTWAIAVTGPVAQDNNLTTMSDFGAWVAQGGTVKLAASTEFVSSPAVLPAM 177
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQR-NNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
+ F L + + S + + I+ R + + + + + +
Sbjct: 178 QDTYGFELNADQTVILSGGDTAATIQAAARGTSGVNAAMVYGTDGGVGATGLVVMEDDKG 237
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRT 275
+ +VR++ L + P+I +L I +A ++ I + + V R
Sbjct: 238 V--QPVYEPAPIVRAEVLAEYPSIPEVLNPIFEGLDMATLQKLNGRIQVGGEPAEAVARD 295
Query: 276 ML 277
L
Sbjct: 296 YL 297
>gi|218457969|ref|ZP_03498060.1| probable glycine betaine/L-proline ABC transporter,
substrate-binding protein [Rhizobium etli Kim 5]
Length = 162
Score = 92.2 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 48/154 (31%), Gaps = 21/154 (13%)
Query: 157 DMINNNKFSLKGFRLIE-ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG 215
+ GF L++ S I + V W P + + L G
Sbjct: 1 QLYKAFGAEKAGFTLVDTGSAAGLDGSIAKAYERKEGWVGYYWAPTALLGKYQMVKLEAG 60
Query: 216 -------------------EEISGFGEASVYTVVRSDYLDK-CPNISRLLKNIKFSVALE 255
+ + + V T+V + +K P + L +S
Sbjct: 61 VPEDSAEWKRCITVADCPDPKPAAWPVDHVVTLVAKPFSEKVGPEVMDYLAKRSWSNDTV 120
Query: 256 NEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
N++M + +N+ + + L+ + D+ W+
Sbjct: 121 NKLMSWMTDNQATGEDGAKHFLKENKDIWTKWVS 154
>gi|220920074|ref|YP_002495375.1| Substrate-binding region of ABC-type glycine betaine transport
system [Methylobacterium nodulans ORS 2060]
gi|219944680|gb|ACL55072.1| Substrate-binding region of ABC-type glycine betaine transport
system [Methylobacterium nodulans ORS 2060]
Length = 310
Score = 92.2 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 38/299 (12%), Positives = 80/299 (26%), Gaps = 28/299 (9%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NI 59
+ L + + S AR A++ PV A G + M L + +
Sbjct: 16 RRKLILGASAAALTGSAARAAET--PVTVASKGDAEGTLLGQMILQTL-RRIDIPVVDRL 72
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS-----------------IKL 102
+L + +L ID + Y +
Sbjct: 73 QLGPTRIVRTALVAGEIDAYPEYTGNVAFFSGTETDPAWKRAETAYAAARRFDASRGLVW 132
Query: 103 VAENLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINN 161
+ + +AV G+ S +D A+ + + E +
Sbjct: 133 LTPARANNSWQIAVRGGLARAEGLSSMEDFARAVRRGLIEFAASAEFVESPAALAAYEQA 192
Query: 162 NKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISG 220
F L R++ + +R + + + + + L++ + +
Sbjct: 193 YGFVLPRERIVTLPGGDTSVTLRAAAQGISGVNAGMVYGTDGAITALDVVVMADPKGAQI 252
Query: 221 FGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
V R L + P I+ L + + + I + + V R L
Sbjct: 253 --VYEPAPVFREPVLARHPAIAPALDRVFAGLDLPTLRRLNAAITVEGETPEAVARRHL 309
>gi|167719571|ref|ZP_02402807.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia pseudomallei DM98]
Length = 292
Score = 91.8 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 40/277 (14%), Positives = 82/277 (29%), Gaps = 28/277 (10%)
Query: 28 VRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGIDIFMGYWYP 85
V A T+ + S +L+ G I L A P+ R+L IDI+ Y
Sbjct: 14 VTVASKIDTEGNLLGNVISQVLKAH-GIAVVDKIGLGATPIVRRALTTGEIDIYPEYTGN 72
Query: 86 SLEKFIAPYLEEGS------------------IKLVAENLQGAKYMLAVNDVGFAL-GIK 126
+ I +A + +AV + +K
Sbjct: 73 AAFFLNKADDPAWKNAAQGYALARQLDYAANRIVWLAPAPANNTWGVAVLNSIAQAQHLK 132
Query: 127 SYQDIAKYKKE-LGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
++ D K+ K+ + F LK +++ S + + I+
Sbjct: 133 TFSDFGKWVAAGGKVKLAASAEFVNSASALPSFEKAYGFKLKPEQMLVLSGGDTAATIKA 192
Query: 186 DQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
+ + + + + + L + + ++R L+ P I+
Sbjct: 193 AAQQTDGVNAAMVYGTDGGIAATGLAVLDD--DKHVQPVYAPTPIIREAVLNAHPQIADY 250
Query: 245 LKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
LK + + + I N + V + L+
Sbjct: 251 LKPVFASLDLKTLQALNARIQINGEPAAGVAASYLKA 287
>gi|170751273|ref|YP_001757533.1| substrate-binding region of ABC-type glycine betaine transport
system [Methylobacterium radiotolerans JCM 2831]
gi|170657795|gb|ACB26850.1| Substrate-binding region of ABC-type glycine betaine transport
system [Methylobacterium radiotolerans JCM 2831]
Length = 328
Score = 91.8 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 45/309 (14%), Positives = 93/309 (30%), Gaps = 32/309 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTP----VRFADTGWTDIAATTAMTSVILEEILGYK 56
M K + L ++ A+ A + + A T+ + L+ G
Sbjct: 19 MVKRIRAGLVAAGLALLVAQCAPTPGAPAAGIVVASKLDTEGGVLGNIILQALQAR-GLP 77
Query: 57 T--NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS--------------- 99
I+L A + ++L ID++ Y + F L
Sbjct: 78 IVDKIQLGATAIVRQALIEGQIDVYPEYTGNAAFFFGKADLPVWKDPEAAYRTARDLDRA 137
Query: 100 ---IKLVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRI 155
+ + + +AV A G+++ D+ +Y GA +
Sbjct: 138 ANDLVWLTPASANNTWAIAVRQEIARAAGLRTMSDLGRYVAGGGAIRLAASSEFVTSPGA 197
Query: 156 LDMI-NNNKFSLKGFRLIEASELASFSQIRRDQRNNIP-AVFLSWEPHPINSDLNIHYLP 213
L F+L+ +L+ + + + I R + + + + L
Sbjct: 198 LPAFGRAYGFTLRPDQLVILAGGDTAATIAAAARGTSGTNAAMVFGTDGSMAVARLVMLD 257
Query: 214 GGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQF 271
+ + VVR L P I+ +L I + +A ++ + +
Sbjct: 258 DDKGV--QPVYQPAPVVRGAVLKAHPEIAAVLDPIFRRLDLATLRDLNGRVQIGGEPASA 315
Query: 272 VGRTMLRTH 280
V LR +
Sbjct: 316 VAADFLRRN 324
>gi|152965261|ref|YP_001361045.1| glycine/betaine ABC transporter substrate-binding protein
[Kineococcus radiotolerans SRS30216]
gi|151359778|gb|ABS02781.1| Substrate-binding region of ABC-type glycine betaine transport
system [Kineococcus radiotolerans SRS30216]
Length = 311
Score = 91.8 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 37/291 (12%), Positives = 81/291 (27%), Gaps = 32/291 (10%)
Query: 9 LFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPV 66
L T S A D + V + + M + +LE+ G + K A V
Sbjct: 29 LAATDTSTGAATDTAA---VIVGSANFPESELLAEMYAQVLEKS-GVEVQRKFNIGAREV 84
Query: 67 TFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS---IKLVAENLQGAKYMLAVNDVGFAL 123
++L++ ID+ Y L EG ++ + V + A
Sbjct: 85 YLKALQDGSIDLLPEYNGALLAALSDGGAPEGVSAPEDVLGALKEVLPEGTEVLEQSAAE 144
Query: 124 GIKSYQDIAKYKKELGAKIY-------------GIEPGNEGNQRILDMINNNKFSLKGFR 170
+ A+ + K E Q ++ + ++
Sbjct: 145 DKDTLSVTAETASKYSLKTIEDLAPVAGELVCGAGPEFQERYQGLVGLKELY--GVQFKE 202
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
+ + V + + L +++ ++ ++
Sbjct: 203 FRPLDAGGPLT--VGALADGTIQVGNIFSTDSAITTNGFVVLEDTKQLFL--AENILPLI 258
Query: 231 RSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
RS+ P I+ L + K + + + + +K+ V L
Sbjct: 259 RSE--KNTPEITEALDGLSAKLTTENLTKFLAQVQVDKKSSAAVATAFLTE 307
>gi|15610895|ref|NP_218276.1| osmoprotectant (glycine betaine/carnitine/choline/L-proline)
binding lipoprotein PROX [Mycobacterium tuberculosis
H37Rv]
gi|148663625|ref|YP_001285148.1| amino acid ABC transporter substrate-binding protein [Mycobacterium
tuberculosis H37Ra]
gi|148824964|ref|YP_001289718.1| osmoprotectant (glycine betaine/carnitine/choline/L-proline)
transport system substrate binding lipoprotein proX
[Mycobacterium tuberculosis F11]
gi|253800806|ref|YP_003033807.1| osmoprotectant proX [Mycobacterium tuberculosis KZN 1435]
gi|289556024|ref|ZP_06445234.1| osmoprotectant proX [Mycobacterium tuberculosis KZN 605]
gi|289763941|ref|ZP_06523319.1| osmoprotectant (glycine betaine/carnitine/choline/L-proline)
binding lipoprotein proX [Mycobacterium tuberculosis GM
1503]
gi|306786673|ref|ZP_07424995.1| osmoprotectant proX [Mycobacterium tuberculosis SUMu003]
gi|306970002|ref|ZP_07482663.1| osmoprotectant proX [Mycobacterium tuberculosis SUMu009]
gi|306974236|ref|ZP_07486897.1| osmoprotectant proX [Mycobacterium tuberculosis SUMu010]
gi|308232558|ref|ZP_07416456.2| osmoprotectant proX [Mycobacterium tuberculosis SUMu001]
gi|308369223|ref|ZP_07416988.2| osmoprotectant proX [Mycobacterium tuberculosis SUMu002]
gi|308372646|ref|ZP_07429362.2| osmoprotectant proX [Mycobacterium tuberculosis SUMu004]
gi|308372729|ref|ZP_07429661.2| osmoprotectant proX [Mycobacterium tuberculosis SUMu005]
gi|308373810|ref|ZP_07433726.2| osmoprotectant proX [Mycobacterium tuberculosis SUMu006]
gi|308374975|ref|ZP_07442273.2| osmoprotectant proX [Mycobacterium tuberculosis SUMu007]
gi|308376220|ref|ZP_07438067.2| osmoprotectant proX [Mycobacterium tuberculosis SUMu008]
gi|308380798|ref|ZP_07491114.2| osmoprotectant proX [Mycobacterium tuberculosis SUMu011]
gi|2960183|emb|CAA18081.1| POSSIBLE OSMOPROTECTANT (GLYCINE
BETAINE/CARNITINE/CHOLINE/L-PROLINE) BINDING LIPOPROTEIN
PROX [Mycobacterium tuberculosis H37Rv]
gi|148507777|gb|ABQ75586.1| amino acid ABC transporter substrate-binding protein [Mycobacterium
tuberculosis H37Ra]
gi|148723491|gb|ABR08116.1| osmoprotectant (glycine betaine/carnitine/choline/L-proline)
transport system substrate binding lipoprotein proX
[Mycobacterium tuberculosis F11]
gi|253322309|gb|ACT26912.1| osmoprotectant proX [Mycobacterium tuberculosis KZN 1435]
gi|289440656|gb|EFD23149.1| osmoprotectant proX [Mycobacterium tuberculosis KZN 605]
gi|289711447|gb|EFD75463.1| osmoprotectant (glycine betaine/carnitine/choline/L-proline)
binding lipoprotein proX [Mycobacterium tuberculosis GM
1503]
gi|308213641|gb|EFO73040.1| osmoprotectant proX [Mycobacterium tuberculosis SUMu001]
gi|308328374|gb|EFP17225.1| osmoprotectant proX [Mycobacterium tuberculosis SUMu002]
gi|308328779|gb|EFP17630.1| osmoprotectant proX [Mycobacterium tuberculosis SUMu003]
gi|308332621|gb|EFP21472.1| osmoprotectant proX [Mycobacterium tuberculosis SUMu004]
gi|308340112|gb|EFP28963.1| osmoprotectant proX [Mycobacterium tuberculosis SUMu005]
gi|308344100|gb|EFP32951.1| osmoprotectant proX [Mycobacterium tuberculosis SUMu006]
gi|308347902|gb|EFP36753.1| osmoprotectant proX [Mycobacterium tuberculosis SUMu007]
gi|308351770|gb|EFP40621.1| osmoprotectant proX [Mycobacterium tuberculosis SUMu008]
gi|308352553|gb|EFP41404.1| osmoprotectant proX [Mycobacterium tuberculosis SUMu009]
gi|308356504|gb|EFP45355.1| osmoprotectant proX [Mycobacterium tuberculosis SUMu010]
gi|308360452|gb|EFP49303.1| osmoprotectant proX [Mycobacterium tuberculosis SUMu011]
gi|328460533|gb|AEB05956.1| osmoprotectant proX [Mycobacterium tuberculosis KZN 4207]
Length = 315
Score = 91.8 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 33/302 (10%), Positives = 80/302 (26%), Gaps = 31/302 (10%)
Query: 4 ILAVCLFLTTFSISYARDAD-------SCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
+ A T ++ +AD S + + + + + +L+ G+
Sbjct: 12 VAAAVWLATVCLVASCANADPLGSATGSVKSIVVGSGDFPESQVIAEIYAQVLQAN-GFD 70
Query: 57 T--NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
+ + + +LK+ ID+ Y L F + E + L
Sbjct: 71 VGRRLGIGSRETYILALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVELELYKRLPGDL 130
Query: 115 AVNDVGFALGI------------KSYQDIAKYKKELGAKIYGIEP-GNEGNQRILDMINN 161
++ A + + IA + + + +
Sbjct: 131 SILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTRPSGLPGLRHK 190
Query: 162 NKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
+ + ++ + R + ++ L E
Sbjct: 191 YSLDIAPGNFVTINDGGGAVTV-RALVEGTATAANLFSTSAAIPQNHLVVLEDPEHNFLA 249
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNN-KQDRQFVGRTMLR 278
G ++ +V S + +L + K + A E+ + N D R +R
Sbjct: 250 G--NIVPLVNSRKKSDH--LKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAARKWVR 305
Query: 279 TH 280
+
Sbjct: 306 DN 307
>gi|239831073|ref|ZP_04679402.1| substrate-binding region of ABC-type glycine betaine transport
system [Ochrobactrum intermedium LMG 3301]
gi|239823340|gb|EEQ94908.1| substrate-binding region of ABC-type glycine betaine transport
system [Ochrobactrum intermedium LMG 3301]
Length = 312
Score = 91.8 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 46/278 (16%), Positives = 86/278 (30%), Gaps = 28/278 (10%)
Query: 28 VRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPVTFRSLKNKGIDIFMGYWYP 85
V + T+ + +L G +T I+L A PV +++ IDI+ Y
Sbjct: 34 VVVSSKIDTEGGVLGNIILAVLNAN-GIQTTDRIQLGATPVVRKAITAGEIDIYPEYTGN 92
Query: 86 S------------------LEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF-ALGIK 126
+ E + I +A + + +AV +
Sbjct: 93 AAFFFNKADDPLWKDAAKAFETAKKLDYDANKIVWLAPSPANNTWGIAVRKDVADENKLT 152
Query: 127 SYQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN-NNKFSLKGFRLIEASELASFSQIRR 185
+ + KY G I + L F+LK +LI S + + I
Sbjct: 153 NLSEFGKYISGGGKVILAASSEFVNSAAALPAFQTAYSFTLKPDQLITLSGGDTAATIAA 212
Query: 186 DQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
N + + + + L + ++R + L K P I L
Sbjct: 213 AANQTNGANAAMVYGTDGGIAPSGLVVLED--DKHVQPVYQPAPIIREEVLKKNPKIEEL 270
Query: 245 LKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
LK + K + E+ + + + V L+T+
Sbjct: 271 LKPVFAKLDLTTLQELNGRVQLGGEPAKAVAEEFLKTN 308
>gi|223938025|ref|ZP_03629923.1| Substrate-binding region of ABC-type glycine betaine transport
system [bacterium Ellin514]
gi|223893239|gb|EEF59702.1| Substrate-binding region of ABC-type glycine betaine transport
system [bacterium Ellin514]
Length = 495
Score = 91.8 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 31/290 (10%), Positives = 70/290 (24%), Gaps = 33/290 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILE-EILGYKTNI 59
M + LFL YA S +T+ + +E + +
Sbjct: 1 MRTLWLFLLFL------YAARPASAEKAVVGSKVFTESYVLGEIARKAIENAGVPCEHKQ 54
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIA-----------PYLEEGSIKLVAENLQ 108
+ + + +LK I + Y E+ + L I + E
Sbjct: 55 GMGGTIILWEALKQGTITAYPDYTGTIREEILKLKKETTVDELRTELARQGIGMTRELGF 114
Query: 109 GAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
Y L +N I+ + ++ + + ++
Sbjct: 115 NNTYALVMNRKKAEA--LGIHKISDLRNHPELRLGLNHEFLKRQDGWEPLAKRYNLQMRD 172
Query: 169 FRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYT 228
I+ N + ++ ++ ++ L
Sbjct: 173 VSGIDHMLG------YTALANGSIDLKEAYSTDAKIAENDLVVLQDDLNFF--PAYKAVF 224
Query: 229 VVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
+ R +D P + LK + + L ++ K
Sbjct: 225 LYR---MDADPRVVEALKKLEGSINENLMMQLNAKAEQTKDYSLAAAMYF 271
>gi|167841110|ref|ZP_02467794.1| ABC transporter, periplasmic glycine/betaine-binding protein,
putative [Burkholderia thailandensis MSMB43]
Length = 285
Score = 91.8 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 41/283 (14%), Positives = 85/283 (30%), Gaps = 28/283 (9%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGIDIF 79
A + V A T+ + + +L+ G I L A P+ R+L IDI+
Sbjct: 1 ARAAGAVTVASKIDTEGNLLGNVIAQVLKAH-GIAVVDKIGLGATPIVRRALTTGQIDIY 59
Query: 80 MGYWYPSLEKFIAPYLEEGS------------------IKLVAENLQGAKYMLAVNDVGF 121
Y + F I +A + +AV +
Sbjct: 60 PEYTGNAAFFFNKADDPAWKNAAQGYALAKQLDYAANRIVWLAPAPANNTWGVAVLNSIA 119
Query: 122 A-LGIKSYQDIAKYKKEL-GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+K++ D K+ K+ + F LK +++ S +
Sbjct: 120 QTQHLKTFSDFGKWVGAGGKVKLAASAEFVNSASALPSFEKAYGFKLKPEQMLVLSGGDT 179
Query: 180 FSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+ I+ + + + + + + L + + ++R L+
Sbjct: 180 AATIKAAAQQTDGVNAAMVYGTDGGIAATGLAVLDD--DKHVQPVYAPAPIIREAVLNAH 237
Query: 239 PNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
P I+ LK + + + I N + V + L+
Sbjct: 238 PQIADYLKPVFASLDLKTLQTLNARIQINGEPAASVAASYLKA 280
>gi|325521974|gb|EGD00664.1| choline ABC transporter, periplasmic binding protein [Burkholderia
sp. TJI49]
Length = 81
Score = 91.4 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 232 SDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGV 291
DY +CPN+++ + N++F+ A+EN +M I+ NK+D L+ +P +L WL GV
Sbjct: 4 PDYAQRCPNVAKFVSNLQFTTAIENHVMVPIM-NKEDPNKAAAAWLKANPQMLDKWLAGV 62
Query: 292 TTFDGQDPSRQLERFM 307
TT DG+ ++ ++
Sbjct: 63 TTIDGKPGLPAVKAYL 78
>gi|332185413|ref|ZP_08387161.1| binding--dependent transport system inner membrane component family
protein [Sphingomonas sp. S17]
gi|332014391|gb|EGI56448.1| binding--dependent transport system inner membrane component family
protein [Sphingomonas sp. S17]
Length = 513
Score = 91.4 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/279 (8%), Positives = 66/279 (23%), Gaps = 34/279 (12%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL-AVPVTFRSLKNKGIDIFM 80
D V +++ + L GY+ + + V F + +D+++
Sbjct: 244 GDQRREVVIGAKNFSEQYILARLIGDRLTRA-GYRVSYRDGLGSAVAFEATAAGQVDVYV 302
Query: 81 GYWYPSLE---------------KFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
Y + + + ++ Y A+
Sbjct: 303 DYAGTLWTTAMHRHDSPPRAAMLGALKDWTATRDVTMLGPLGFENAYAFAMKTPLAER-- 360
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
+ +A + G + + + + S + + R
Sbjct: 361 LGVRSLADLSRVAPRLTLGSDLEFLDRPEWAAVRDAYDLRF------ASMTPYSPTFMYR 414
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
+ V ++ + + L + +V D L
Sbjct: 415 ALDSGRADVISAFSSDGRIAADRLTVLSDPKRA--IPGYDAVLLVAKDRAGDA-RFVEAL 471
Query: 246 KNI--KFSVALENEMMKLILNN---KQDRQFVGRTMLRT 279
+ + + V E + + K+ + R L
Sbjct: 472 RPMLNRIPVEAMREANYRVDRDDAAKESPEAAAR-WLAK 509
>gi|327189745|gb|EGE56889.1| putative amino acid ABC transporter, substrate-binding protein
[Rhizobium etli CNPAF512]
Length = 198
Score = 91.4 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/172 (16%), Positives = 50/172 (29%), Gaps = 12/172 (6%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M +LAV I+ A +C V A+ W + ILE G +
Sbjct: 1 MKNLLAVSTVALIAGIASNASA-ACGTVSVANMNWQSGELLAHVDKFILEHGFGCQVEFV 59
Query: 61 LLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVND 118
P ++ DI W + + ++E I + L G +
Sbjct: 60 PGDTVPTITSMVEKGQPDIAGEAWVDLVPDIVKRGVDERRIVNIGPALSDGGIQGWYIPK 119
Query: 119 VG--FALGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDMINN 161
IK+ D + + A ++ G+ G+ +
Sbjct: 120 FIVDAHPEIKTVDDAFAHPELFPAPENMSKGAVFNGPTGSGGSVVSAQLFKG 171
>gi|15843379|ref|NP_338416.1| amino acid ABC transporter, amino acid-binding protein, putative
[Mycobacterium tuberculosis CDC1551]
gi|219559843|ref|ZP_03538919.1| amino acid ABC transporter, amino acid-binding protein, putative
[Mycobacterium tuberculosis T17]
gi|254233251|ref|ZP_04926577.1| osmoprotectant (glycine betaine/carnitine/choline/L-proline)
binding lipoprotein proX [Mycobacterium tuberculosis C]
gi|13883744|gb|AAK48230.1| amino acid ABC transporter, amino acid-binding protein, putative
[Mycobacterium tuberculosis CDC1551]
gi|124603044|gb|EAY61319.1| osmoprotectant (glycine betaine/carnitine/choline/L-proline)
binding lipoprotein proX [Mycobacterium tuberculosis C]
Length = 343
Score = 91.4 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 31/296 (10%), Positives = 78/296 (26%), Gaps = 26/296 (8%)
Query: 5 LAVCLFLTTFSIS--YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
LA + + + + S + + + + + +L+ G+ +
Sbjct: 46 LATVCLVASCANADPLGSATGSVKSIVVGSGDFPESQVIAEIYAQVLQAN-GFDVGRRLG 104
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ + +LK+ ID+ Y L F + E + L++
Sbjct: 105 IGSRETYIPALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVELELYKRLPGDLSILTPS 164
Query: 121 FALGI------------KSYQDIAKYKKELGAKIYGIEP-GNEGNQRILDMINNNKFSLK 167
A + + IA + + + + +
Sbjct: 165 PASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTRPSGLPGLRHKYSLDIA 224
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
+ ++ + R + ++ L E G ++
Sbjct: 225 PGNFVTINDGGGAVTV-RALVEGTATAANLFSTSAAIPQNHLVVLEDPEHNFLAG--NIV 281
Query: 228 TVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNN-KQDRQFVGRTMLRTH 280
+V S + +L + K + A E+ + N D R +R +
Sbjct: 282 PLVNSRKKSDH--LKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAARKWVRDN 335
>gi|254297636|ref|ZP_04965089.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia pseudomallei 406e]
gi|157807930|gb|EDO85100.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia pseudomallei 406e]
Length = 312
Score = 91.4 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 41/277 (14%), Positives = 83/277 (29%), Gaps = 28/277 (10%)
Query: 28 VRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGIDIFMGYWYP 85
V A T+ + S +L+ G I L A P+ R+L IDI+ Y
Sbjct: 34 VIVASKIDTEGNLLGNVISQVLKAH-GIAVVDKIGLGATPIVRRALTTGEIDIYPEYTGN 92
Query: 86 SLEKFIAPYLEEGS------------------IKLVAENLQGAKYMLAVNDVGFAL-GIK 126
+ F I +A + +AV + +K
Sbjct: 93 AAFFFNKADDPAWKNAAQGYALARQLDYAANRIVWLAPAPANNTWGVAVLNSIAQAQHLK 152
Query: 127 SYQDIAKYKKE-LGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
++ D K+ K+ + F LK +++ S + + I+
Sbjct: 153 TFSDFGKWVAAGGKVKLAASAEFVNSASALPSFEKAYGFKLKPEQMLVLSGGDTAATIKA 212
Query: 186 DQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
+ + + + + + L + + ++R L+ P I+
Sbjct: 213 AAQQTDGVNAAMVYGTDGGIAATGLAVLND--DKHVQPVYAPTPIIREAVLNAHPQIADY 270
Query: 245 LKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
LK + + + I N + V + L+
Sbjct: 271 LKPVFASLDLKTLQALNARIQINGEPAAGVAASYLKA 307
>gi|325002033|ref|ZP_08123145.1| Permease binding-protein component ABC transporter [Pseudonocardia
sp. P1]
Length = 323
Score = 91.4 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 33/288 (11%), Positives = 74/288 (25%), Gaps = 29/288 (10%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPVTFR 69
+ + S + + ++ LE +G + VT +
Sbjct: 35 ASAGSLAEQVDLSGQTYVVGSKNFDEQQVLCQISIAALES-VGAAVTDRCNVGGSDVTRQ 93
Query: 70 SLKNKGIDIFMGYWYPSLEKFIAPYLE----------------EGSIKLVAENLQGAKYM 113
+L + I + Y + F+ + E + + Y
Sbjct: 94 ALVHGDISTYWEYTGTAWASFLTETRKLPDDEVLRELRERDRAENGVVWLDRAGFDNTYA 153
Query: 114 LAVN-DVGFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFSLKGFRL 171
V+ L + S D+A Y + +E N + + +
Sbjct: 154 FVVDGTTAARLHLDSISDMAAYLRSGQPGSVCVETEYNSRADGLRGLQQAYDMEIPR--- 210
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVR 231
+ +E+ I + + + L + L S +R
Sbjct: 211 -DRTEVVEQGLIFQSTADGVCLFGEVAATDGRIPGLGLKVLDDDRGYHI--TYSAVPTIR 267
Query: 232 SDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
D D+ P ++ + I + + + + V R L
Sbjct: 268 QDVFDRAPQVAEVFAPIAAALDQPTIQRLNGRVSAGGESPRDVARAWL 315
>gi|134102843|ref|YP_001108504.1| putative ABC transport system substrate binding protein
[Saccharopolyspora erythraea NRRL 2338]
gi|291008765|ref|ZP_06566738.1| putative ABC transport system substrate binding protein
[Saccharopolyspora erythraea NRRL 2338]
gi|133915466|emb|CAM05579.1| putative ABC transport system substrate binding protein
[Saccharopolyspora erythraea NRRL 2338]
Length = 292
Score = 91.4 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 33/301 (10%), Positives = 81/301 (26%), Gaps = 36/301 (11%)
Query: 1 MYKILAVCLFLTTFSISYA------RDADSCTPVRFADTGWTDIAATTAMTSVILEE-IL 53
M ++LA A + V + + + + L
Sbjct: 1 MKRLLAFAAVAALALTGCASQDPLEANKAQGGTVVVGSADFAESELLMEIYAEALRSTGT 60
Query: 54 GYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYP------------SLEKFIAPYLEE--GS 99
+T ++ A ++K + + Y ++ +
Sbjct: 61 DVQTRPRIGAREFYVNAVKGGELTLVPEYTGNLLAYLDKQAAGTEAQEVYNQLKGKLPPE 120
Query: 100 IKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI 159
++L+ ++ +LAV A G++S D+ E + G + +
Sbjct: 121 LELLDQSPAEDSDVLAVTAATAATGVRSMTDLGPRCGEF---VLGAPAEWKSR---WEAR 174
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
+ K + N V + N+ L +
Sbjct: 175 IGEVYGCKFKEIRSVEAGTVT---VDALTGNQVQVANLFTTSSQIQQNNLVKLDDPKN-- 229
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
F +V +V L P +L + + ++ + + +K + V ++ +
Sbjct: 230 MFPAQNVVPLVHKSTLK--PEQVAVLNKVSAALTTDELTDLNRQLEVDKANPADVAKSFV 287
Query: 278 R 278
Sbjct: 288 A 288
>gi|53719351|ref|YP_108337.1| putative ABC transporter exported protein [Burkholderia
pseudomallei K96243]
gi|126438567|ref|YP_001059011.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia pseudomallei 668]
gi|167815774|ref|ZP_02447454.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia pseudomallei 91]
gi|167910899|ref|ZP_02497990.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia pseudomallei 112]
gi|52209765|emb|CAH35736.1| putative ABC transport system, exported protein [Burkholderia
pseudomallei K96243]
gi|126218060|gb|ABN81566.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia pseudomallei 668]
Length = 312
Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 41/277 (14%), Positives = 83/277 (29%), Gaps = 28/277 (10%)
Query: 28 VRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGIDIFMGYWYP 85
V A T+ + S +L+ G I L A P+ R+L IDI+ Y
Sbjct: 34 VIVASKIDTEGNLLGNVISQVLKAH-GIAVVDKIGLGATPIVRRALTTGEIDIYPEYTGN 92
Query: 86 SLEKFIAPYLEEGS------------------IKLVAENLQGAKYMLAVNDVGFAL-GIK 126
+ F I +A + +AV + +K
Sbjct: 93 AAFFFNKADDPAWKNAAQGYALARQLDYAANRIVWLAPAPANNTWGVAVLNSIAQAQHLK 152
Query: 127 SYQDIAKYKKE-LGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
++ D K+ K+ + F LK +++ S + + I+
Sbjct: 153 TFSDFGKWVAAGGKVKLAASAEFVNSASALPSFEKAYGFKLKPEQMLVLSGGDTAATIKA 212
Query: 186 DQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
+ + + + + + L + + ++R L+ P I+
Sbjct: 213 AAQQTDGVNAAMVYGTDGGIAATGLAVLDD--DKHVQPVYAPTPIIREAVLNAHPQIADY 270
Query: 245 LKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
LK + + + I N + V + L+
Sbjct: 271 LKPVFASLDLKTLQALNARIQINGEPAAGVAASYLKA 307
>gi|29828720|ref|NP_823354.1| ABC transporter substrate-binding protein [Streptomyces avermitilis
MA-4680]
gi|29605824|dbj|BAC69889.1| putative ABC transporter substrate-binding protein [Streptomyces
avermitilis MA-4680]
Length = 334
Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 38/279 (13%), Positives = 73/279 (26%), Gaps = 29/279 (10%)
Query: 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGI 76
+ D V + + + L+ G K K + T+ LKN +
Sbjct: 59 SGDKAGGDSVVVGSNNFAESILIADIYGEALKAK-GIKVTYKPNIGSRETTYGLLKNGSL 117
Query: 77 DIFMGYWYP--------------SLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
+ Y + + +KL+ K + VN
Sbjct: 118 TVLPEYNGALLAYLDSKATPKTVATTTAAINAKLDSKLKLLDPAPAQDKDSVTVNAATAK 177
Query: 123 L-GIKSYQDIAKYKKELGAKIYGI-EPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ S IA K G Q ++ + + + S
Sbjct: 178 KYHLTSESSIADLKDIAPDLAIGASPEFQTRQQGLVGLKSVYGLN--FKSFKALDAGGSL 235
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+Q + N + P + L + + GF +V +V L +
Sbjct: 236 TQ--AALKKNTVQAADLFTTDPTITKEKFVVLQDPKNLFGF--ENVQPLVYKSGLSQ--K 289
Query: 241 ISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ L + K +M + +D V + L
Sbjct: 290 GADTLNAVSAKLDTVALLKMDAEVQLQNKDPLDVAKAWL 328
>gi|289672075|ref|ZP_06492965.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. syringae FF5]
Length = 211
Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 37/210 (17%), Positives = 57/210 (27%), Gaps = 24/210 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDA-----DSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
M K L L S +S PV+FA W T + V+L++ G
Sbjct: 3 MKKALLTTLVSAGLLASAGASQAAGWCESGKPVKFAGLNWESAMLLTDILQVVLDKGYGC 62
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
+ +L I IF W + G + V + GA
Sbjct: 63 TVDALPGNSIAMENALGTNDIQIFAEEWV-GRSEVWNKAAAAGKVVGVGAPIVGAVEGWY 121
Query: 116 VNDV-----------GFALGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILD 157
V A +KS D+A+Y + Y G +
Sbjct: 122 VPRYVIEGDAKRKLEAKAPNLKSISDLAQYSAVFKDQEEPGKGRFYNCPAGWTCELENSE 181
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQ 187
M+ + K + A + I
Sbjct: 182 MLKSYGLESKYTNFRPGTGPALDAAILSSY 211
>gi|167581836|ref|ZP_02374710.1| ABC transporter, periplasmic glycine/betaine-binding protein,
putative [Burkholderia thailandensis TXDOH]
Length = 312
Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 37/277 (13%), Positives = 81/277 (29%), Gaps = 28/277 (10%)
Query: 28 VRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGIDIFMGYWYP 85
+ A T+ + + +L+ G I L A P+ ++L IDI+ Y
Sbjct: 34 ITVASKIDTEGNLLGNVIAQVLKAH-GIAVVDKIGLGATPIVRKALTTGEIDIYPEYTGN 92
Query: 86 SLEKFIAPYLEEGS------------------IKLVAENLQGAKYMLAVNDVGFAL-GIK 126
+ F I +A + +AV +K
Sbjct: 93 AAFFFNKADDPAWKNAAQGYALARQLDYAANRIVWLAPAPANNTWGVAVLSSVAQAQHLK 152
Query: 127 SYQDIAKYKKE-LGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
++ D ++ K+ + F LK +++ S + + I+
Sbjct: 153 TFSDFGRWVGAGGKVKLAASAEFVNSASALPSFEKAYGFKLKQEQMLVLSGGDTAATIKA 212
Query: 186 DQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
+ + + + + + L + + ++R L P I+
Sbjct: 213 AAQQTDGVNAAMVYGTDGGIAAAGLTVLDD--DKHVQPVYAPTPIIREAVLKAHPQIADY 270
Query: 245 LKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
LK + + + I N + V + L+
Sbjct: 271 LKPVFAGLDLKTLQTLNARIQINGEPAASVAASYLKA 307
>gi|205363944|gb|ACI04473.1| ABC-type glycine betaine substrate binding-like protein [uncultured
bacterium RM57]
Length = 266
Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 31/266 (11%), Positives = 67/266 (25%), Gaps = 26/266 (9%)
Query: 30 FADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGIDIFMGYWYPSL 87
+T+ + + +E + + ++L + ID ++ Y +L
Sbjct: 2 IGAKNFTEQVVLGELLAQEIEASGAGPVERRFWLAGSYLCQQALISGRIDGYVEYTGTAL 61
Query: 88 EKFIAP--------------YLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAK 133
+ L + + G + A+ G + I+
Sbjct: 62 TAILKQPLDRDAARVNATVARLYQQRYGVTVGPGLGFEDTFAMVVRGEEARRLGLRTISD 121
Query: 134 YKKELGAKIYG-IEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIP 192
K G E + + + G + R +
Sbjct: 122 VAKVSPPMRLGVGYEFAERPDGLQGLSAAYRLRFAGE-----PRTMELGLLYRALGAHQV 176
Query: 193 AVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KF 250
+ L + L + F +VR D L + P I + + K
Sbjct: 177 DIVAGNSTDGAIQALGLIALED--DRHYFPPYEAVPLVRDDALRRWPQIRVAMDRLAGKV 234
Query: 251 SVALENEMMKLILNNKQDRQFVGRTM 276
+ M + + +D V R
Sbjct: 235 NERDMRTMNFAVESRHRDVGQVVREF 260
>gi|119963096|ref|YP_948524.1| glycine betaine/choline-binding protein of an ABC-type transport
system [Arthrobacter aurescens TC1]
gi|119949955|gb|ABM08866.1| glycine betaine/choline-binding protein of an ABC-type transport
system [Arthrobacter aurescens TC1]
Length = 318
Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/288 (11%), Positives = 80/288 (27%), Gaps = 28/288 (9%)
Query: 11 LTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEE-ILGYKTNIKLLAVPVTFR 69
L T S S + + + + + + L L + + + + F+
Sbjct: 35 LATPSTSAPSGSAAGGSLVVGSADFPESQVIAEIYVGALNAAGLTATSKPNIGSREIYFK 94
Query: 70 SLKNKGIDIFMGYWYP------------SLEKFIAPYLEE--GSIKLVAENLQGAKYMLA 115
++++ +D+ Y S E + + ++ +K +
Sbjct: 95 AVQDGSVDLVPDYSGNLLSYVDTEATEVSAEDVYKALPGKLPDGLAVLEPAKAESKDAMV 154
Query: 116 VNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
V +KS +D+AK K+ E + N
Sbjct: 155 VTKATAEKYQLKSIEDLAKVCKDFTM---AAPATFETRAYGFPGLKANYGCELKGLQPFN 211
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDY 234
+ + + + V + P +D ++ L + V +V+
Sbjct: 212 DGGGNLTL--QALLEDKVQVADIYTTTPSIADNDLVVLEDPKNNFK--AQQVLPLVKEAK 267
Query: 235 LDKCPNISRLLKNIK--FSVALENEMMKLIL-NNKQDRQFVGRTMLRT 279
+ L N+ + + + + + KQ + L+
Sbjct: 268 MTD--KAKEALNNVSKILTTDDLINLNRAVSGDQKQSPKDAAAAWLKD 313
>gi|197295535|ref|YP_002154076.1| putative substrate-binding transporter protein [Burkholderia
cenocepacia J2315]
gi|195945014|emb|CAR57637.1| putative substrate-binding transporter protein [Burkholderia
cenocepacia J2315]
Length = 253
Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/244 (13%), Positives = 72/244 (29%), Gaps = 5/244 (2%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPS 86
+ + A +A+ IL G + F+ L+ D+ W PS
Sbjct: 10 SLTLVTIDLSFHRAASAVVRRILNAH-GIAVDECFAPHEQAFQMLREGQADMLSSAWLPS 68
Query: 87 LEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDI--AKYKKELGAKIYG 144
E ++ + + + V D A +++ D+ + +I G
Sbjct: 69 SHSIYL-APFEHDVEKITVLYR-PYALWGVPDYVPASAVRAIPDLKRPDVAARMVKRIQG 126
Query: 145 IEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPIN 204
I PG ++ +++ G+ + + V W P ++
Sbjct: 127 INPGAGISRFSREIVTQYGLDDAGYHFENGTLDDCVGAFEQAVAERRWVVVPLWTPQYLH 186
Query: 205 SDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILN 264
I L + + G + + V ++ P L+ + + + L+
Sbjct: 187 EQYTIRELDDPKGLLGGTDDATLIVRKASLHAIAPAALAELRALNLGNRETSRLDYLLSR 246
Query: 265 NKQD 268
Sbjct: 247 TGAT 250
>gi|41406369|ref|NP_959205.1| ProX [Mycobacterium avium subsp. paratuberculosis K-10]
gi|41394717|gb|AAS02588.1| ProX [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 338
Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 31/296 (10%), Positives = 77/296 (26%), Gaps = 24/296 (8%)
Query: 4 ILAVCLFLTTFSIS--YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NI 59
+L + S S S + + + + + L+ G+ +
Sbjct: 40 LLTTMFVVAACSNSDPLGAQVRSPDSIVVGSGDFPESQIIAEIYAQALQAN-GFDVGKRM 98
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWY-------PSLEKFIAPYLEEGSIKLVAENL----- 107
+ + ++K+ ID+ Y P+ +E+ + + +L
Sbjct: 99 GIGSRETYIPAIKDHSIDLVPEYIGNLLLYFEPASSATTLDAVEQELHRRLPADLSILTP 158
Query: 108 QGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEP-GNEGNQRILDMINNNKFSL 166
A V+ A + + I +G + + +
Sbjct: 159 APATDTDTVSVTSQAANSWNLRTIGDLAPHSADIRFGAPSAFATRPAGLPGLRQKYGLDI 218
Query: 167 KGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV 226
K + + + R + P ++ L E G +V
Sbjct: 219 KPGNFVAIDDGGGAVTV-RALLEGRVNAANIFTTSPAIPQHHLVALDDPEHNFMAG--NV 275
Query: 227 YTVVR-SDYLDKCPNISRLLKNIKFSVALENEMMKLILNN-KQDRQFVGRTMLRTH 280
+V ++ + + K + + + N D R +R +
Sbjct: 276 VPLVNSQKRSERLKLVLDAVSA-KLTTPGVAGLNAAVSGNSGVDPDQAARNWVRDN 330
>gi|254773327|ref|ZP_05214843.1| ABC transporter, quaternary amine uptake transporter (QAT) family
protein, substrate-binding protein [Mycobacterium avium
subsp. avium ATCC 25291]
Length = 315
Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 36/298 (12%), Positives = 79/298 (26%), Gaps = 28/298 (9%)
Query: 4 ILAVCLFLTTFSIS--YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NI 59
+L + S S S + + + + + L+ G+ +
Sbjct: 17 LLTTMFVVAACSNSDPLGAQVRSPDSIVVGSGDFPESQIIAEIYAQALQAN-GFDVGKRM 75
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWY-------PSLEKFIAPYLEEGSIKLVAENL----- 107
+ + ++K+ ID+ Y P+ +E+ + + +L
Sbjct: 76 GIGSRETYIPAIKDHSIDLVPEYIGNLLLYFEPASSATTLDAVEQELHRRLPADLSILTP 135
Query: 108 QGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEP-GNEGNQRILDMINNNKFSL 166
A V+ A + + I +G + + +
Sbjct: 136 APATDTDTVSVTSQAANSWNLRTIGDLAPHSADVRFGAPSAFATRPAGLPGLRQKYGLDI 195
Query: 167 KGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV 226
K + + + R + P ++ L E G +V
Sbjct: 196 KPGNFVAIDDGGGAVTV-RALLEGRVNAANIFTTSPAIPQHHLVALDDPEHNFIAG--NV 252
Query: 227 YTVVRSDYLDKCPNISRL-LKNI--KFSVALENEMMKLILNN-KQDRQFVGRTMLRTH 280
+V S K +L L + K + + + N D R LR +
Sbjct: 253 VPLVNS---QKHSERLKLVLDAVSAKLTTPGVAGLNAAVSGNSGVDPDQAARNWLRDN 307
>gi|146342394|ref|YP_001207442.1| putative glycine betaine/carnitine/choline ABC transporter permease
and substrate binding protein [Bradyrhizobium sp.
ORS278]
gi|146195200|emb|CAL79225.1| putative glycine betaine/carnitine/choline ABC transporter
(permease and substrate binding protein) [Bradyrhizobium
sp. ORS278]
Length = 515
Score = 90.7 bits (223), Expect = 3e-16, Method: Composition-based stats.
Identities = 37/291 (12%), Positives = 85/291 (29%), Gaps = 33/291 (11%)
Query: 7 VCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPV 66
+ L + A + +T+ +A+ S LE T+ L V
Sbjct: 232 ATIVLMAGASLLPALAGNAARYVVGAKTFTEQYVLSALISERLEASGLSATSRAGLGSSV 291
Query: 67 TFRSLKNKGIDIFMGYWYPSLE---------------KFIAPYLEEGSIKLVAENLQGAK 111
+ +LKN ID ++ Y + L + L+ E
Sbjct: 292 IYEALKNGDIDAYVDYSGTLWANQFHHTEQRPREALLAALKQDLARDKVTLLGELGFENA 351
Query: 112 YMLAVNDVGFAL-GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
Y L + GI+S +D+A++ +E+ + + + + + R
Sbjct: 352 YALVMPRKRAEALGIRSIEDLARHTREMS---IAGDYEFFSRPEWAALRDAYGLAFRTQR 408
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
++ + + V + + + ++ L ++ ++
Sbjct: 409 QMQPDF------MYAAVASGEVDVIAGYTSDGLIAKYDLVVLDDPKQA--IPPYDAILLL 460
Query: 231 RSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQD--RQFVGRTML 277
D + L+ + + +A + + D V R L
Sbjct: 461 SPKRADDR-ALQDALRPLLGRIDIATMQQANLRASGSDADSSPHAVAR-WL 509
>gi|288960739|ref|YP_003451079.1| osmoprotectant transport system substrate-binding protein
[Azospirillum sp. B510]
gi|288913047|dbj|BAI74535.1| osmoprotectant transport system substrate-binding protein
[Azospirillum sp. B510]
Length = 358
Score = 90.7 bits (223), Expect = 3e-16, Method: Composition-based stats.
Identities = 46/295 (15%), Positives = 85/295 (28%), Gaps = 28/295 (9%)
Query: 9 LFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPV 66
+ A A + VR + M +L+ G T I+L +
Sbjct: 61 VVFGVAFGLAAGSAQAADAVRVGSKLDAESGLLGTMIQQVLQAN-GIPTENKIQLGPTKI 119
Query: 67 TFRSLKNKGIDIFMGYWYPS------------------LEKFIAPYLEEGSIKLVAENLQ 108
+L IDI+ Y +K E+ I +
Sbjct: 120 VRGALLAGEIDIYPEYTGNGAFFFNVDSDPVWKNAGAGYDKVRQLDKEKNGIVWLKPAPA 179
Query: 109 GAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGI-EPGNEGNQRILDMINNNKFSL 166
+ LAV +K+ +D AK+ G E + FSL
Sbjct: 180 NNTWALAVRHDVAEANTLKTMEDFAKWVSGGGKAKVAASAEFVESPAALPSFQQTYGFSL 239
Query: 167 KGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEAS 225
K +++ + + + IR + + + + L++ L +
Sbjct: 240 KPDQMLILAGGDTAATIRAAAEQTSGVNTAMVYGTDGAIAALDLVVLTDTKGAQM--VYE 297
Query: 226 VYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
+R+ L P I LL + + I + QD++ V L+
Sbjct: 298 PAPTMRAPVLAANPRIPDLLDPVFASLDAETLRALNARISVDGQDQKQVATDWLK 352
>gi|145594179|ref|YP_001158476.1| substrate-binding region of ABC-type glycine betaine transport
system [Salinispora tropica CNB-440]
gi|145303516|gb|ABP54098.1| Substrate-binding region of ABC-type glycine betaine transport
system [Salinispora tropica CNB-440]
Length = 327
Score = 90.7 bits (223), Expect = 3e-16, Method: Composition-based stats.
Identities = 26/280 (9%), Positives = 78/280 (27%), Gaps = 30/280 (10%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPVTFRSLKNKGIDIFMG 81
+ +T+ +T L G + + ++L + +D++
Sbjct: 49 KGQTIVVGSKDFTENIVFGHITMQALTAA-GAEVEDKTNIKGSVNVRKALLSGDVDVYWD 107
Query: 82 YWYPSLEKFIA-----------------PYLEEGSIKLVAENLQGAKYMLAVNDVGFAL- 123
Y + ++ E+ ++ A Y +A+ + A
Sbjct: 108 YTGTAWITYLDHTDPIQDSAEQYAAVVEEDKEKNNVVWGAYAPANNTYAIALREEKAAEW 167
Query: 124 GIKSYQDIAKYKKELGAKIYGIE--PGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
+ + D+A++ K + N M + + ++
Sbjct: 168 NLTNVSDLAEFAKNNPQEATFCLETEFVGRNDGWPGMTAAYGMDIPAENVKVVDTGVVYT 227
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNI 241
+ + + + S L++ L + S F + + + + +I
Sbjct: 228 ETK---KGEACNFGEVFTTDGRISHLDLRVLED--DQSFFPIYNPAPTLNGETAESYSSI 282
Query: 242 SRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+L+ + K + + + + V ++
Sbjct: 283 LTILEPVVAKLDDETLRGLNEKVDVQGEPVAQVVSEWMKA 322
>gi|311693882|gb|ADP96755.1| substrate-binding region of ABC-type glycine betaine transport
system [marine bacterium HP15]
Length = 305
Score = 90.7 bits (223), Expect = 3e-16, Method: Composition-based stats.
Identities = 45/302 (14%), Positives = 89/302 (29%), Gaps = 30/302 (9%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--I 59
+L L F +S + A PV + T+ + M LE G +
Sbjct: 4 KSLLRRTAALIAFVMSGSVMAA--DPVVVSSKIDTEGSVLGQMVLQSLEGA-GIPVENRL 60
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYP------------------SLEKFIAPYLEEGSIK 101
+L + ++K IDI+ Y + ++ E +I
Sbjct: 61 QLGGTSIVRNAIKAGEIDIYPEYTGNAAFFHDQADLDIWKDADKAYQEAARLDKEAHNIV 120
Query: 102 LVAENLQGAKYMLAVNDVGF-ALGIKSYQDIAKYKKE-LGAKIYGIEPGNEGNQRILDMI 159
+ + ++V + + +D+A Y E K E +
Sbjct: 121 WLEPAEANNTWAMSVRGDLARENNLATLEDLADYINEGGAFKFAASAEFVESASALPAFQ 180
Query: 160 NNNKFSLKGFRLIEASEL-ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
F L+ +L+ S + + NN +++ L++ + +
Sbjct: 181 EAYGFKLESDQLLILSGGNTAATLRAAALNNNDVNGAMTYGTDGGLDALDLKVMEDTAGV 240
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
+VR + L+ P I +L I + + + N V R
Sbjct: 241 --QPVYQPAPIVRGEVLEAYPQIREVLTPIFESLDLETLQRLNGQVAVNGVPADTVARDY 298
Query: 277 LR 278
L
Sbjct: 299 LD 300
>gi|218755542|ref|ZP_03534338.1| amino acid ABC transporter, amino acid-binding protein, putative
[Mycobacterium tuberculosis GM 1503]
Length = 343
Score = 90.7 bits (223), Expect = 3e-16, Method: Composition-based stats.
Identities = 33/302 (10%), Positives = 80/302 (26%), Gaps = 31/302 (10%)
Query: 4 ILAVCLFLTTFSISYARDAD-------SCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
+ A T ++ +AD S + + + + + +L+ G+
Sbjct: 40 VAAAVWLATVCLVASCANADPLGSATGSVKSIVVGSGDFPESQVIAEIYAQVLQAN-GFD 98
Query: 57 T--NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
+ + + +LK+ ID+ Y L F + E + L
Sbjct: 99 VGRRLGIGSRETYILALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVELELYKRLPGDL 158
Query: 115 AVNDVGFALGI------------KSYQDIAKYKKELGAKIYGIEP-GNEGNQRILDMINN 161
++ A + + IA + + + +
Sbjct: 159 SILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTRPSGLPGLRHK 218
Query: 162 NKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
+ + ++ + R + ++ L E
Sbjct: 219 YSLDIAPGNFVTINDGGGAVTV-RALVEGTATAANLFSTSAAIPQNHLVVLEDPEHNFLA 277
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNN-KQDRQFVGRTMLR 278
G ++ +V S + +L + K + A E+ + N D R +R
Sbjct: 278 G--NIVPLVNSRKKSDH--LKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAARKWVR 333
Query: 279 TH 280
+
Sbjct: 334 DN 335
>gi|323342335|ref|ZP_08082567.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter [Erysipelothrix rhusiopathiae ATCC 19414]
gi|322463447|gb|EFY08641.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter [Erysipelothrix rhusiopathiae ATCC 19414]
Length = 297
Score = 90.3 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 36/281 (12%), Positives = 85/281 (30%), Gaps = 30/281 (10%)
Query: 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-LAVPVTFRSLKNKGID 77
+ + D ++ T M +++E Y I+ +A + F +K+ +D
Sbjct: 17 GCGSRQEGDLVIIDGDIAEMNVATYMAKIMIETYTDYSVYIQPSMAYNLAFDQIKSGAMD 76
Query: 78 IFMGYWYPSLEKFIAPYLEEG------------------SIKLVAENLQGAKYMLAVNDV 119
+ + + L F+ ++ +KL+ Y++AV D
Sbjct: 77 MTLSWDGTVLTTFLKQDPQDIPSNQSLFDFTNKLAQEKAQVKLLEPLGSENSYVVAVTDD 136
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ + I+ K I+ E + N + + ++
Sbjct: 137 LAETY--NLKTISDLKPIASELIFAAEHSFFDDNGSVRYKPLTKFYDMEFKEANSIDIGL 194
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+ + + V L + + + L +VRSD
Sbjct: 195 KLAGLDS----DNMDVTLVTSADGMVNRYPVTMLEDDLNFF--PRYQSAFLVRSDLEKDF 248
Query: 239 PNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
P + +L+ I + ++ + ++ + V R L
Sbjct: 249 PGVEAVLEKISNSITTDESRQLNYRVDVEVKNPETVARDFL 289
>gi|319784154|ref|YP_004143630.1| substrate-binding region of ABC-type glycine betaine transport
system [Mesorhizobium ciceri biovar biserrulae WSM1271]
gi|317170042|gb|ADV13580.1| Substrate-binding region of ABC-type glycine betaine transport
system [Mesorhizobium ciceri biovar biserrulae WSM1271]
Length = 303
Score = 90.3 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 44/305 (14%), Positives = 91/305 (29%), Gaps = 31/305 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--N 58
M+ + + I+ A V + T+ + ++L KT
Sbjct: 1 MFSVKFLAGAALALGITVASANAQ---VVVSSKIDTEGGVLGNIIQLVLNAN-NIKTSDR 56
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPS------------------LEKFIAPYLEEGSI 100
I+L PV +++ IDI+ Y + E + I
Sbjct: 57 IQLGGTPVVRKAITAGEIDIYPEYTGNAAFFFEKADDPVWKDAAKAYETAKKLDYDANKI 116
Query: 101 KLVAENLQGAKYMLAVNDVGFA-LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI 159
++ + + +A+ + + D KY G + + L
Sbjct: 117 VWLSPSPANNTWAIALRKEVAETNKLATLTDFGKYVAGGGQVVLAASAEFVNSAAALPAF 176
Query: 160 NN-NKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEE 217
F+LK +LI S + + I N + + + + L +
Sbjct: 177 QTTYGFTLKPDQLITLSGGDTAATIAAAANQTNGANAAMVYGTDGGIAPSGLVVLDDDKG 236
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
+ ++R L + P I LLK + K + E+ + + + V
Sbjct: 237 V--QPVYQPAPIIREAVLKQHPEIETLLKPVFAKLDLVTLQELNGRVQVGGEPVKGVAED 294
Query: 276 MLRTH 280
L+ +
Sbjct: 295 FLKKN 299
>gi|300690614|ref|YP_003751609.1| ABC-type glycine betaine transport system, Substrate-binding inner
membrane component [Ralstonia solanacearum PSI07]
gi|299077674|emb|CBJ50310.1| putative ABC-type glycine betaine transport system,
Substrate-binding inner membrane component [Ralstonia
solanacearum PSI07]
Length = 502
Score = 90.3 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 26/289 (8%), Positives = 67/289 (23%), Gaps = 28/289 (9%)
Query: 11 LTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRS 70
+ ++ A + P+R +T+ + + + L + F +
Sbjct: 1 MALGWLACGALAWAEPPLRIGSKRFTESYVLGEVLTQTAAPHGPAEHVPGLGNTAIVFAA 60
Query: 71 LKNKGIDIFMGYWYPSLEKFIA-----PYLEEGSIKLVAEN------------LQGAKYM 113
L++ ID++ Y + + + + L N G +
Sbjct: 61 LRSGSIDLYPDYLGTIAAEILHLPPALAADPDQAALLADVNRALAPLGLGAGVPLGFEDT 120
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
A+ + +A ++ ++ + + L
Sbjct: 121 YALAMREADAERDGIRALADLAAHPALRLGLSHEFLGRADGWPALVRRYRLPQQPTGLDH 180
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
R V + ++ L F + R +
Sbjct: 181 GV-------AYDALRAGQTDVIDIYSTDARIRREHLRVLEDS--AHVFPRYDAVVLYRLE 231
Query: 234 YLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ + + + + M + Q V L H
Sbjct: 232 VPARHAAQWQAITALAGRIRRDEMVAMNAAVELEGQSFARVASQFLAGH 280
>gi|77164065|ref|YP_342590.1| ABC transporter inner membrane/substrate-binding proteins
[Nitrosococcus oceani ATCC 19707]
gi|254435500|ref|ZP_05049007.1| ABC transporter, QAT family, substrate-binding protein
[Nitrosococcus oceani AFC27]
gi|300115080|ref|YP_003761655.1| glycine betaine ABC transporter substrate-binding protein
[Nitrosococcus watsonii C-113]
gi|76882379|gb|ABA57060.1| ABC transporter, fused inner membrane component and
substrate-binding domain [Nitrosococcus oceani ATCC
19707]
gi|207088611|gb|EDZ65883.1| ABC transporter, QAT family, substrate-binding protein
[Nitrosococcus oceani AFC27]
gi|299541017|gb|ADJ29334.1| Substrate-binding region of ABC-type glycine betaine transport
system [Nitrosococcus watsonii C-113]
Length = 501
Score = 90.3 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 29/270 (10%), Positives = 59/270 (21%), Gaps = 25/270 (9%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGIDIFMG 81
+ + V +T+ + + G +L V + +L IDI+
Sbjct: 24 ADSAVIVGSKKFTESILLGELVVQQIRSA-GVNAIHRRELGGSRVLWNALLTGEIDIYPE 82
Query: 82 YWYPSLEKFIAPYLEE----------GSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDI 131
Y + + + E I++ Y L + +
Sbjct: 83 YTGTLYYEIFSRQVTEEAELRRLLVAQGIEMSRPLGFNNTYALGMKEAVAERLNIRKISD 142
Query: 132 AKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI 191
EL + + R
Sbjct: 143 LVRHPELVLGFSN--EFMARADGWPGLRTRYGLPQRQV------SGLDHDLAYRGLAQGS 194
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--K 249
V + + L + F + + R D L + P L ++ +
Sbjct: 195 LQVIDLYSTDAEIDYYGLRVLED--DRHYFPDYKALLLYRRDLLKQAPEAVTALHSLEGR 252
Query: 250 FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
A M + + V L
Sbjct: 253 LDSASMAAMNAQVKLERVPDFQVAGNFLEQ 282
>gi|260430439|ref|ZP_05784412.1| amine ABC transporter, periplasmic amine-binding protein
[Citreicella sp. SE45]
gi|260418468|gb|EEX11725.1| amine ABC transporter, periplasmic amine-binding protein
[Citreicella sp. SE45]
Length = 297
Score = 90.3 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 34/275 (12%), Positives = 76/275 (27%), Gaps = 27/275 (9%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPVTFRSLKNKGIDIFMGYWY 84
+ + T+ + ++ LE+ G ++L V ++ IDI+ Y
Sbjct: 19 DITVSSKIDTEGGLLGNIIALSLEDA-GLPVERRLQLGGTQVVREAILAGQIDIYPEYTG 77
Query: 85 PSLEKFIAPYLEEGS-----------------IKLVAENLQGAKYMLAVNDVGFALGIKS 127
+ F + I ++ + +AV +
Sbjct: 78 NAAFFFNEADSDVWKDAAAAHERAAELDVQNEITWLSSAPANNTWAIAVTGPVAEENGLA 137
Query: 128 YQDIAKYKKELGAKI--YGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
G I + M F L + + S + + I+
Sbjct: 138 TMSDFGAWIAGGGDIKLAASTEFVSSPAVLPAMETTYGFELTQDQTVILSGGDTAATIQA 197
Query: 186 DQR-NNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
R + + + + + + + +VR+ L++ P+I +
Sbjct: 198 AARGTSGVNAAMVYGTDGGVGATGLKVMTDDKGV--QPVYEPTPIVRNAVLEEYPSIPEV 255
Query: 245 LKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
L I + E+ I + + V R L
Sbjct: 256 LNPIFEGLDMETLQELNGRIQVGGEPAEAVAREYL 290
>gi|315444025|ref|YP_004076904.1| periplasmic glycine betaine/choline-binding (lipo)protein of an ABC
transporter (osmoprotectant binding protein)
[Mycobacterium sp. Spyr1]
gi|315262328|gb|ADT99069.1| periplasmic glycine betaine/choline-binding (lipo)protein of an
ABC-type transport system (osmoprotectant binding
protein) [Mycobacterium sp. Spyr1]
Length = 324
Score = 90.3 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 31/313 (9%), Positives = 74/313 (23%), Gaps = 46/313 (14%)
Query: 4 ILAVCLFLTTFSISYARD--------------ADSCTPVRFADTGWTDIAATTAMTSVIL 49
+ V L L+ + + +T+ + L
Sbjct: 10 LAVVTLTLSACGLGSGSAVPLRVGPGTIQPTPGLEGLKITVGSKEYTEQVIMGYILQFTL 69
Query: 50 EEILGYKTNIKLL--AVPVTFRSLKNKGIDIFMGYWYPSLEKFI---------------- 91
G T + + +DI + + ++
Sbjct: 70 -AAAGADVRDLTGIVGSRSTREAQLSGQVDIAYEFTGNAWINYLGHEKPIPDTREQYEAV 128
Query: 92 -APYLEEGSIKLVAENLQGAKYMLAVNDVGFALG---IKSYQDIAKYKKELGAKIYGIEP 147
LE + + Y LA + S + A+
Sbjct: 129 RDEDLERNDMVWLEPGPMDDTYALAASAQTIERTGVRTLSDYAALVMRDPAAARTCVDTE 188
Query: 148 GNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN-IPAVFLSWEPHPINSD 206
M F + + + I + + + S
Sbjct: 189 FRARQDGFPGMAAAYGFDPARAQ----TPILQVGIIYQATADGTECDFGEVFTTDGRISA 244
Query: 207 LNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILN 264
L++ L ++ SV ++ ++ + P ++ + + + EM K +
Sbjct: 245 LDLTVLTDDKQFFAHYNPSVT--MKREFFEAHPEVAEVTAPVTAALTNEAITEMNKQVDV 302
Query: 265 NKQDRQFVGRTML 277
+ +D V R +
Sbjct: 303 DGRDPSVVARDWM 315
>gi|149185008|ref|ZP_01863325.1| ABC transporter permease protein [Erythrobacter sp. SD-21]
gi|148831119|gb|EDL49553.1| ABC transporter permease protein [Erythrobacter sp. SD-21]
Length = 512
Score = 90.3 bits (222), Expect = 4e-16, Method: Composition-based stats.
Identities = 31/293 (10%), Positives = 72/293 (24%), Gaps = 33/293 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL- 62
++ V L + + + V G+++ + LE G+ +
Sbjct: 225 LMTVALGVGGALFAQFGGGEDEDRVVIGAKGFSEQYILARLIGQRLEAE-GFAVEYRDGL 283
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL----------------EEGSIKLVAEN 106
V + + ID+++ Y + E IK++
Sbjct: 284 GSAVAHSAAASGEIDVYVDYTGTIWTNQMKREDTLARDEMYAAIEQWETENTGIKMLGRL 343
Query: 107 LQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSL 166
Y LA+ G ++ IA A G +P + + +
Sbjct: 344 GFENAYGLAMRQEVATSG--QFESIADLAARGQAMTIGGDPEFFERPEWIAVRDAYGLRF 401
Query: 167 KGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV 226
R + + ++ V ++ + L
Sbjct: 402 AEKRNFSPTF------MYNALQSGEADVIGAYTSDGRIEADRLVILKDPRGAF--PNYDA 453
Query: 227 YTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLIL--NNKQDRQFVGRT 275
++ + + + L + V E + +K R
Sbjct: 454 VLLLSPE-AGRDAALVDALTPLVDAIDVEAMREANYSVDREEDKLSFDEAARR 505
>gi|145223698|ref|YP_001134376.1| substrate-binding region of ABC-type glycine betaine transport
system [Mycobacterium gilvum PYR-GCK]
gi|145216184|gb|ABP45588.1| Substrate-binding region of ABC-type glycine betaine transport
system [Mycobacterium gilvum PYR-GCK]
Length = 324
Score = 89.9 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 32/313 (10%), Positives = 74/313 (23%), Gaps = 46/313 (14%)
Query: 4 ILAVCLFLTTFSISYARD--------------ADSCTPVRFADTGWTDIAATTAMTSVIL 49
+ V L L+ + + +T+ + L
Sbjct: 10 LAVVTLTLSACGLGSGSAVPLRVGPGTIQPTPGLEGLKITVGSKEYTEQVIMGYILQFTL 69
Query: 50 EEILGYKTNIKLL--AVPVTFRSLKNKGIDIFMGYWYPSLEKFI---------------- 91
G T + + +DI + + ++
Sbjct: 70 -AAAGADVRDLTGIVGSRSTREAQLSGQVDIAYEFTGNAWINYLGHEKPIPDTREQYEAV 128
Query: 92 -APYLEEGSIKLVAENLQGAKYMLAVNDVGFALG---IKSYQDIAKYKKELGAKIYGIEP 147
LE + + Y LA + S + A+
Sbjct: 129 RDEDLERNDMVWLEPGPMDDTYALAASAQTIERTGVRTLSDYAALVMRDPAAARTCVDTE 188
Query: 148 GNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN-IPAVFLSWEPHPINSD 206
M F + + + I + + + S
Sbjct: 189 FRARQDGFPGMAAAYGFDPARAQ----TPILQVGIIYQATADGTECDFGEVFTTDGRISA 244
Query: 207 LNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILN 264
L++ L ++ SV ++ ++ + P I+ + + + EM K +
Sbjct: 245 LDLTVLTDDKQFFAHYNPSVT--MKREFFEAHPEIAEVTAPVTAALTNEAITEMNKQVDV 302
Query: 265 NKQDRQFVGRTML 277
+ +D V R +
Sbjct: 303 DGRDPSVVARDWM 315
>gi|254822452|ref|ZP_05227453.1| ProX [Mycobacterium intracellulare ATCC 13950]
Length = 315
Score = 89.9 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 31/300 (10%), Positives = 78/300 (26%), Gaps = 31/300 (10%)
Query: 6 AVCLFLTTFSISYARDADSCT-------PVRFADTGWTDIAATTAMTSVILEEILGYKT- 57
A L ++ ++D + + + + + L+ G+
Sbjct: 14 AAALLTAMCVVAACSNSDPLGAQVKSPWSIVVGSGDFPESQIIAEIYAQALQAN-GFDIG 72
Query: 58 -NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ + + +LK+ ID+ Y L F + E + L++
Sbjct: 73 RRMGIGSRETYIPALKDHSIDLVPEYIGNLLLYFAPDSEATTLDVVELELRRRLPGDLSI 132
Query: 117 NDVGFA------------LGIKSYQDIAKYKKELGAKIYGIEP-GNEGNQRILDMINNNK 163
A + + IA +G + +
Sbjct: 133 LTPAPATDTDTVTVTSQTANAWNLKTIADLAAHSAEVRFGAPSAFATRPAGLPGLRQKYG 192
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
++ + + + R + + P ++ L E G
Sbjct: 193 LDIRPGNFVAIDDGGGAVTV-RALLDGRVNAANVFTTSPAIPQGHLVVLDDPEHNFVAG- 250
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNN-KQDRQFVGRTMLRTH 280
++ +V S + +L + K + + + + N D R +R +
Sbjct: 251 -NIVPLVNSQ--KNSGLLKDVLDAVSAKLTTSGVAGLNAAVSGNSGIDPDEAARNWIRDN 307
>gi|260184682|ref|ZP_05762156.1| amino acid ABC transporter, amino acid-binding protein, putative
[Mycobacterium tuberculosis CPHL_A]
Length = 313
Score = 89.9 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 32/307 (10%), Positives = 80/307 (26%), Gaps = 33/307 (10%)
Query: 1 MYKILAVCL--FLTTFSISYARDAD-------SCTPVRFADTGWTDIAATTAMTSVILEE 51
+ + T ++ +AD S + + + + + +L+
Sbjct: 5 LRRATVAAAVWLATVCLVASCANADPLGSATGSVKSIVVESGDFPESQVIAEIYAQVLQA 64
Query: 52 ILGYKT--NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQG 109
G+ + + + +LK+ ID+ Y L F + E +
Sbjct: 65 N-GFDVGRRLGIGSRETYIPALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVELELYKR 123
Query: 110 AKYMLAVNDVGFALGI------------KSYQDIAKYKKELGAKIYGIEP-GNEGNQRIL 156
L++ A + + IA + +
Sbjct: 124 LPGDLSILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTRPSGLP 183
Query: 157 DMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE 216
+ + + + ++ + R + ++ L E
Sbjct: 184 GLRHKYSLDIAPGNFVTINDGGGAVTV-RALVEGTATAANLFSTSAAIPQNHLVVLEDPE 242
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNN-KQDRQFVG 273
G ++ +V S + +L + K + A E+ + N D
Sbjct: 243 HNFLAG--NIVPLVNSRKKSDH--LKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAA 298
Query: 274 RTMLRTH 280
R +R +
Sbjct: 299 RKWVRDN 305
>gi|313674288|ref|YP_004052284.1| substrate-binding region of ABC-type glycine betaine transport
system [Marivirga tractuosa DSM 4126]
gi|312940986|gb|ADR20176.1| Substrate-binding region of ABC-type glycine betaine transport
system [Marivirga tractuosa DSM 4126]
Length = 525
Score = 89.9 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 18/135 (13%), Positives = 31/135 (22%), Gaps = 11/135 (8%)
Query: 147 PGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSD 206
+ + F + + + N V +
Sbjct: 248 EFVFREDGLKGLFKAYDFEIDYVE-------MEIGLMYQALANEEVDVISGFSTDGRIKA 300
Query: 207 LNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILN 264
N+ L V R LD+ P I L + + S A M +
Sbjct: 301 YNLKTLKDNRNYF--PPYEAAPVARQAVLDRFPEIRNSLSLLENQISNAEMTAMNYRVDE 358
Query: 265 NKQDRQFVGRTMLRT 279
K+ + V L
Sbjct: 359 EKKQPEEVALEFLNN 373
Score = 57.9 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 11/87 (12%), Positives = 30/87 (34%), Gaps = 2/87 (2%)
Query: 26 TPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--LLAVPVTFRSLKNKGIDIFMGYW 83
++ +T+ + +++E+ +K + ++KN IDI+ Y
Sbjct: 388 GTIKIGSKAFTENYILAHIFKMVIEQNTRLNVELKLGFGGTKLLMDAMKNDEIDIYPEYT 447
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQGA 110
+L + +E + +
Sbjct: 448 GTALLLLLETNEKERGVLFSNPDKVYN 474
>gi|218462434|ref|ZP_03502525.1| Substrate-binding region of ABC-type glycine betaine transport
system [Rhizobium etli Kim 5]
Length = 157
Score = 89.9 bits (221), Expect = 5e-16, Method: Composition-based stats.
Identities = 21/163 (12%), Positives = 52/163 (31%), Gaps = 26/163 (15%)
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISG--- 220
+ S + I R N + + W P I ++ L G +
Sbjct: 2 GQKGFELVETGSPERLDASIARAFENKVGWLGYYWAPTAILGKYDMTRLSFGVGHNKSEW 61
Query: 221 ----------------FGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILN 264
+ + +T++ + + ++ LK K+ A N+++
Sbjct: 62 DGCTAVAGCTRPQLNSYPVSRAFTLMTRSFATRSGPVTAYLKARKWDNATINQVLAWQDE 121
Query: 265 NKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
N++ + LR + +L W+ D + +++ +
Sbjct: 122 NRESNEDAAIHFLRNYENLWSKWVP-------ADIAEKIKASL 157
>gi|114763104|ref|ZP_01442530.1| ABC transporter, periplasmic substrate-binding protein [Pelagibaca
bermudensis HTCC2601]
gi|114544157|gb|EAU47166.1| ABC transporter, periplasmic substrate-binding protein [Roseovarius
sp. HTCC2601]
Length = 301
Score = 89.9 bits (221), Expect = 5e-16, Method: Composition-based stats.
Identities = 39/275 (14%), Positives = 81/275 (29%), Gaps = 27/275 (9%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPVTFRSLKNKGIDIFMGYWY 84
+ + T+ M ++ LE+ G ++L V +L IDI+ Y
Sbjct: 23 EITVSSKIDTEGGLLGNMIALALEDA-GLPVERRLQLGGTQVVREALLAGQIDIYPEYTG 81
Query: 85 PSLEKF-----------------IAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG-IK 126
+ F A E + + + +A+ +
Sbjct: 82 NAAYFFNEADSEVWKNPEEAYARAAELDTENDLTWLQSAPANNTWAIALTGPLAEENELV 141
Query: 127 SYQDIAKYKKEL-GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
+ D + + K+ + M F L + + S + + I+
Sbjct: 142 TMSDFGAWVADGGEIKLAASTEFVSSPAVLPAMQETYGFELGPDQTVILSGGDTAATIQA 201
Query: 186 DQR-NNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
R + +++ + + + + VVR L++ P IS +
Sbjct: 202 AARGTSGVNAAMAYGTDGGVGAAGLVVMEDDKGV--QPVYEPAPVVRDTVLEEYPAISEV 259
Query: 245 LKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
L I +A E+ I + + V R L
Sbjct: 260 LNPIFSDLDMATLQELNGRIQVGGEPAEAVAREYL 294
>gi|111019583|ref|YP_702555.1| ABC amino acid transporter, substrate binding component
[Rhodococcus jostii RHA1]
gi|110819113|gb|ABG94397.1| ABC amino acid transporter, substrate binding component
[Rhodococcus jostii RHA1]
Length = 302
Score = 89.5 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 34/308 (11%), Positives = 82/308 (26%), Gaps = 40/308 (12%)
Query: 1 MYKILAVCLFLTTFSISYARD-----------ADSCTPVRFADTGWTDIAATTAMTSVIL 49
M K L V L T A S + + + + + L
Sbjct: 1 MKKALIVALTGATLMSLTACGIGKDPLASDDGGSSDGAIVVGSADFPESQLIATIYAEAL 60
Query: 50 EEILGYKT--NIKLLAVPVTFRSLKNKGIDIFMGYWY--------------PSLEKFIAP 93
G + + + V ++++ ID+ Y
Sbjct: 61 RAN-GIDVTEKLNIGSREVYVPAIRDGSIDLLPEYSGALLQYLDSATTATASDEVTEEIK 119
Query: 94 YLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQ 153
+ + + K +LAV S + I G P + +
Sbjct: 120 AKLPAGLIALEPSPAEDKDVLAVRQETADEY--SLETIEDLVPHADELTLGGPPEWKTRE 177
Query: 154 RILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLP 213
+ + +K+ L + + + V + P N+ L
Sbjct: 178 NGVAGLR-DKYGLTFKEFLALDAGGPLTL--NALLSGQIEVADVFSTDPAMRSENLVALE 234
Query: 214 GGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQF 271
+ + ++ ++ + ++ +L ++ + EM + + + +D
Sbjct: 235 DTKHLFL--AENITPIINENKAGD--DVRGVLADVSAALTTDDLIEMNQRVA-DLEDMGD 289
Query: 272 VGRTMLRT 279
+ R L+
Sbjct: 290 IAREWLQD 297
>gi|260466835|ref|ZP_05813019.1| Substrate-binding region of ABC-type glycine betaine transport
system [Mesorhizobium opportunistum WSM2075]
gi|259029337|gb|EEW30629.1| Substrate-binding region of ABC-type glycine betaine transport
system [Mesorhizobium opportunistum WSM2075]
Length = 303
Score = 89.5 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 43/305 (14%), Positives = 89/305 (29%), Gaps = 31/305 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-- 58
M+ + + I+ A + V + T+ + ++L KT
Sbjct: 1 MFSVKVLASAALALGITMASASAQ---VVVSSKIDTEGGVLGNIIQLVLNAN-NIKTTDR 56
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPS------------------LEKFIAPYLEEGSI 100
I+L PV +++ IDI+ Y + E + I
Sbjct: 57 IQLGGTPVVRKAITAGEIDIYPEYTGNAAFFFEKADDPVWKDAAKAYETAKKLDYDANKI 116
Query: 101 KLVAENLQGAKYMLAVNDVGFA-LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI 159
++ + +A+ + + D KY G + + L
Sbjct: 117 VWLSPAPANNTWAIALRKEVADTNKLATLSDFGKYVAGGGQVVLAASAEFVNSAAALPAF 176
Query: 160 NN-NKFSLKGFRLIEASELASFSQIRRDQRNNIP-AVFLSWEPHPINSDLNIHYLPGGEE 217
F LK +LI S + + I + + + + L +
Sbjct: 177 QTTYGFKLKPEQLITLSGGDTAATIAAAANQTSGANAAMVYGTDGGIAPSGLVVLEDDKG 236
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
+ ++R L + P I LLK + K + E+ + + + V
Sbjct: 237 V--QPVYQPAPIIRESVLKQHPEIETLLKPVFAKLDLVTLQELNGRVQVGGEPVKGVAEG 294
Query: 276 MLRTH 280
L+ +
Sbjct: 295 FLKKN 299
>gi|284035250|ref|YP_003385180.1| binding-protein-dependent transporters inner membrane component
[Spirosoma linguale DSM 74]
gi|283814543|gb|ADB36381.1| binding-protein-dependent transport systems inner membrane
component [Spirosoma linguale DSM 74]
Length = 519
Score = 89.5 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 25/221 (11%), Positives = 56/221 (25%), Gaps = 18/221 (8%)
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFI-APYLEEGSIKLVAENLQGAKYMLAVNDVG 120
F + +++ + P+ I + L + L+ V
Sbjct: 163 GLGEFIFSGIALSNVNMMLSGAIPAALLAIGFDFGLARLQHLSGKKLRVGALAFVVLVPF 222
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ K + YG + L+ + +
Sbjct: 223 LSAFYLVPGRQDKLIAGFAHEFYG------RADGYPGLQKTYGLQLRPRLIDQN------ 270
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ + + + N+ L F VVR LD+ P
Sbjct: 271 -LMYEAIHREQVDIISGYSTDGRINAFNLLVLADP--KHAFPPYDAAPVVRQAALDRHPE 327
Query: 241 ISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+ L + K + ++ + + K+ + V R L+
Sbjct: 328 LEPTLNRLVGKLTDSVMTALNYRVDYKKESPERVAREFLQQ 368
Score = 49.4 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 14/128 (10%), Positives = 31/128 (24%), Gaps = 24/128 (18%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK--TNIKLLAVPVTFRSLKNKGID 77
V +T+ + ++E + T L + F +L+ ID
Sbjct: 376 APEARTETVVMGSKVFTEQYILAEIYRQLIEGQTQLRMVTKTGLGGTQICFDALRTGAID 435
Query: 78 IFMGYWYPSLEKFIAP----------------------YLEEGSIKLVAENLQGAKYMLA 115
+ Y L + P + ++ + + Y L
Sbjct: 436 FYPEYTGTGLLVVLQPSSAVLKTLPMQSDSVYKFCREQFRQKYQLTWLKPLGFNNSYCLM 495
Query: 116 VNDVGFAL 123
+
Sbjct: 496 MRREQAQK 503
>gi|290962479|ref|YP_003493661.1| substrate-binding protein [Streptomyces scabiei 87.22]
gi|260652005|emb|CBG75137.1| putative secreted substrate-binding protein [Streptomyces scabiei
87.22]
Length = 307
Score = 89.5 bits (220), Expect = 6e-16, Method: Composition-based stats.
Identities = 43/308 (13%), Positives = 89/308 (28%), Gaps = 39/308 (12%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCT-------------PVRFADTGWTDIAATTAMTSV 47
MY+ A L + S + + + + S
Sbjct: 1 MYRGAAFGLITALTLTACGGGGGSDDDPLAGGGGGGGGNTITVGSANFPENQLLAEIYSQ 60
Query: 48 ILEEILGYKTNIKL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAE 105
LE+ G K K A V + + GID+ Y L + + + +
Sbjct: 61 ALEDK-GLKVTRKFDIGAREVYYDQVVKGGIDVLPEYNGALLTVAVDKNSTATTTEDINA 119
Query: 106 NLQG-------------AKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGN 152
L+ A+ +V + +A K G G +
Sbjct: 120 ELKEKLPSSVEILDSASAEDKDSVTVTAETAAKYKLKTLADLKPVAGDMTLGAGSEFKTR 179
Query: 153 -QRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHY 211
Q + + F + + + + + + +++ + P +
Sbjct: 180 VQGGVGLKKIYGVEFGKF---QPLDAGAQTTLVKLLKDDKVQAANLYTTDPAIVADKLVV 236
Query: 212 LPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDR 269
L + + +V +V D ++ + L + K + EMMK + N+K+D
Sbjct: 237 LEDPKNLF--ASQNVTPLVYKDAVND--KAKKALDAVSAKLTTGDLLEMMKRLSNDKEDS 292
Query: 270 QFVGRTML 277
V + L
Sbjct: 293 DTVAKDWL 300
>gi|308406236|ref|ZP_07495670.2| osmoprotectant proX [Mycobacterium tuberculosis SUMu012]
gi|308364034|gb|EFP52885.1| osmoprotectant proX [Mycobacterium tuberculosis SUMu012]
Length = 295
Score = 89.5 bits (220), Expect = 6e-16, Method: Composition-based stats.
Identities = 31/293 (10%), Positives = 77/293 (26%), Gaps = 31/293 (10%)
Query: 13 TFSISYARDAD-------SCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLA 63
++ +AD S + + + + + +L+ G+ + + +
Sbjct: 1 MCLVASCANADPLGSATGSVKSIVVGSGDFPESQVIAEIYAQVLQAN-GFDVGRRLGIGS 59
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+LK+ ID+ Y L F + E + L++ A
Sbjct: 60 RETYILALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVELELYKRLPGDLSILTPSPAS 119
Query: 124 GI------------KSYQDIAKYKKELGAKIYGIEP-GNEGNQRILDMINNNKFSLKGFR 170
+ + IA + + + + +
Sbjct: 120 DTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTRPSGLPGLRHKYSLDIAPGN 179
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
+ ++ + R + ++ L E G ++ +V
Sbjct: 180 FVTINDGGGAVTV-RALVEGTATAANLFSTSAAIPQNHLVVLEDPEHNFLAG--NIVPLV 236
Query: 231 RSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNN-KQDRQFVGRTMLRTH 280
S + +L + K + A E+ + N D R +R +
Sbjct: 237 NSRKKSDH--LKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAARKWVRDN 287
>gi|262198375|ref|YP_003269584.1| substrate-binding region of ABC-type glycine betaine transporter
[Haliangium ochraceum DSM 14365]
gi|262081722|gb|ACY17691.1| Substrate-binding region of ABC-type glycine betaine transport
system [Haliangium ochraceum DSM 14365]
Length = 537
Score = 89.5 bits (220), Expect = 6e-16, Method: Composition-based stats.
Identities = 38/278 (13%), Positives = 84/278 (30%), Gaps = 33/278 (11%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL-AVPVTFRSLKNKGIDIF 79
+A V +T+ + L E GY +K V F +L+ ID++
Sbjct: 250 EAAPRRTVMVGAKTFTESYILARLIRARLSEA-GYPAQLKEGLGSAVVFDALRQGEIDVY 308
Query: 80 MGYWYPSLEKFIAP----------------YLEEGSIKLVAENLQGAKYMLAVNDVGF-A 122
+ Y + E +K + Y LA+ +
Sbjct: 309 VDYSGTIWANAMKRTETLPPQEVLDQMSEWLEREHEMKSLGALGFENAYGLALREDAAAE 368
Query: 123 LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
LG+ + ++ + +L G + + + + +A +
Sbjct: 369 LGVDTISELVPHTPKLS---LGSDFEFFDRPEWTKLRDTYGLAF------DAQRAFDPTL 419
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ + V ++ + N+ LP + F ++ + K P++
Sbjct: 420 MYPAVKEGDVDVITAFTTDGRIAAFNLRVLPD--DKHAFPPYDAVLLLSPE-ASKDPDLI 476
Query: 243 RLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
L + KL+ +++D QF + +L
Sbjct: 477 AALAPLIGAIDSDAMRTANKLVDVDRKDTQFAAQYLLD 514
>gi|213022398|ref|ZP_03336845.1| substrate-binding region of ABC-type glycine betaine transport
system [Salmonella enterica subsp. enterica serovar
Typhi str. 404ty]
Length = 164
Score = 89.5 bits (220), Expect = 6e-16, Method: Composition-based stats.
Identities = 14/159 (8%), Positives = 46/159 (28%), Gaps = 8/159 (5%)
Query: 123 LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ + + + + + + + + + L ++ +
Sbjct: 8 QMVAKIEQVRQNDPDHNWMLGLDLEFAGRSDGMKPLQQAYQMQLDRPQIRQMDPG----L 63
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ R+ + L + ++ L + +V VVR + L+ P +
Sbjct: 64 VYNAVRDGLVDAGLVYTTDGRVKGFDLKVLEDDKGFF--PSYAVTPVVRKEVLEANPGLD 121
Query: 243 RLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
L + + + + + + + Q V L+
Sbjct: 122 DALNTLSGLLNNDVISTLNAQVDIEHRTPQQVAHQFLQD 160
>gi|88855058|ref|ZP_01129723.1| Putative secreted protein [marine actinobacterium PHSC20C1]
gi|88815586|gb|EAR25443.1| Putative secreted protein [marine actinobacterium PHSC20C1]
Length = 303
Score = 89.5 bits (220), Expect = 6e-16, Method: Composition-based stats.
Identities = 32/271 (11%), Positives = 75/271 (27%), Gaps = 10/271 (3%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKN 73
+ + + + + + LE G+ + + +L++
Sbjct: 34 TGSGDENANSETIVVGSQAYYSNEIIAEIYAQALENA-GFDVDRQFQIGQRDAYLTALES 92
Query: 74 KGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAK 133
+D+F Y L+ + S + AE L V D A SY A
Sbjct: 93 GEVDVFPEYTGNLLQFYSPDTTATASEDVYAELADALPEGLTVLDQSSATDQDSYNVTAD 152
Query: 134 YKKELGAKIYGIEPG-NEGNQRILDMINNNKFSLKGFRLIEASELASFSQ---IRRDQRN 189
+ E + G ++ + + G + ++ +
Sbjct: 153 FAAENSLETLADLAGVSDLKLGGNAELEERPYGPAGLEDTYGATVSFTATGDTTVDALVA 212
Query: 190 NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
+ + P N+ L E + ++V +V +D D ++ + K
Sbjct: 213 GTINIANVYSADPRIQTENLVSLTDPEGLFL--ASNVVPLVNADVADSIADVINAVSA-K 269
Query: 250 FSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ + +K + L +
Sbjct: 270 LTPEGLVALNVQSTVDKMSSDDIASAWLSEN 300
>gi|270489725|ref|ZP_06206799.1| glycine betaine-binding periplasmic family protein [Yersinia pestis
KIM D27]
gi|270338229|gb|EFA49006.1| glycine betaine-binding periplasmic family protein [Yersinia pestis
KIM D27]
Length = 192
Score = 89.1 bits (219), Expect = 7e-16, Method: Composition-based stats.
Identities = 23/181 (12%), Positives = 52/181 (28%), Gaps = 23/181 (12%)
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
+ + A + G PG I I S + + A + +
Sbjct: 1 MFDANNDGKADLTGCNPGWGCEAPINHQIKAYGLSDT-VTHNQGNYAAMIADTITRYKEG 59
Query: 191 IPAVFLSWEP----HPINSDLNIHYLPGGEE---------------ISGFGEASVYTVVR 231
P ++ +W P + ++ +L GF + ++ V
Sbjct: 60 KPILYYTWTPYWVSDVLVPGRDVVWLQVPFSSLPDKTIDTQLSNGANYGFPPSVMHIVAN 119
Query: 232 SDYLDKCPNISRLLKNIKFSVALENEMMKLI---LNNKQDRQFVGRTMLRTHPDLLKNWL 288
+ + P ++L +K S+ N + ++ D + + H W+
Sbjct: 120 KKWAEANPAAAKLFSIMKLSINDVNAQNMRMHSGESSDADIERHVNGWINAHQATFDGWV 179
Query: 289 I 289
Sbjct: 180 K 180
>gi|115373306|ref|ZP_01460606.1| ABC transproter, fused inner membrane component and
substrate-binding domain [Stigmatella aurantiaca
DW4/3-1]
gi|115369752|gb|EAU68687.1| ABC transproter, fused inner membrane component and
substrate-binding domain [Stigmatella aurantiaca
DW4/3-1]
Length = 482
Score = 89.1 bits (219), Expect = 8e-16, Method: Composition-based stats.
Identities = 23/266 (8%), Positives = 66/266 (24%), Gaps = 24/266 (9%)
Query: 29 RFADTGWTDIAATTAMTSVILEEILGYKT-NIKLLAVPVTFRSLKNKGIDIFMGYWYPSL 87
R +T+ M + + + +L V + +L+ +D++ Y
Sbjct: 2 RVGSKKFTESVIIGEMVTRLARDAGARAVHRRELGGTAVLWEALRRGELDVYPEYTGTLR 61
Query: 88 EKFIA-----------PYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKK 136
++ A L +++ A Y L + + + I+ ++
Sbjct: 62 QELFAGRALRDDAALREALAAEGLRMSAPLGFNNTYALGMKESEAER--LGVRRISDLRR 119
Query: 137 ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFL 196
++ + + + + R ++ V
Sbjct: 120 HPELRLGLSNEFMDRADGWPALRERYQLPQREV------RGLDHDLAYRALQSGALQVTD 173
Query: 197 SWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVAL 254
+ + + L + + R + + P + L + + S
Sbjct: 174 LYSTDAEIAAYGLRVLEDDLKHF--PTYDAVLLYREAWAVRAPGVLASLSRLEGQLSEQE 231
Query: 255 ENEMMKLILNNKQDRQFVGRTMLRTH 280
+ V L +
Sbjct: 232 MVTLNARARLEHVPETRVAAEFLARN 257
>gi|116671385|ref|YP_832318.1| substrate-binding region of ABC-type glycine betaine transport
system [Arthrobacter sp. FB24]
gi|116611494|gb|ABK04218.1| Substrate-binding region of ABC-type glycine betaine transport
system [Arthrobacter sp. FB24]
Length = 318
Score = 88.7 bits (218), Expect = 9e-16, Method: Composition-based stats.
Identities = 38/302 (12%), Positives = 89/302 (29%), Gaps = 36/302 (11%)
Query: 5 LAVCLFLTTFSIS--------YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
+ + L L+ + S + + + + + + L G
Sbjct: 21 VGLALALSACGGGSDPLGSAPATGGSGSGSALVIGSADFPESQIIAEIYAGALNAA-GVT 79
Query: 57 --TNIKLLAVPVTFRSLKNKGIDIFMGYWYP------------SLEKFIAPYLEE--GSI 100
T + + V F+++++ +D+ Y S E + +
Sbjct: 80 ASTKPNIGSREVYFKAVQDGSVDVIPDYSGNLLLHVNKEATEVSAEDIYKALPAKLPEGL 139
Query: 101 KLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI 159
++ + K + V +KS +D+AK EL + G L +
Sbjct: 140 AVLEASKAEDKDAMVVTKATAEKYQLKSIEDLAKVCSEL---VVGAPATFAERAYGLPGL 196
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
N +S + +L S+ + + + V + P +D ++ L +
Sbjct: 197 KKN-YSCEPKKLEPFSDGGGPITV-KALLEDKVQVADIYTTTPAIADNDLVVLDDPKNNF 254
Query: 220 GFGEASVYTVVRS-DYLDKCPNISRLLKNIKFSVALENEMMKLIL-NNKQDRQFVGRTML 277
V + DK + I + + + + KQ+ + L
Sbjct: 255 I--AQQVLPLYNKAKMTDKAKEALNSVSKI-LTTEDLINLNRAVSGTQKQNPKDAAAAWL 311
Query: 278 RT 279
+
Sbjct: 312 KD 313
>gi|226365473|ref|YP_002783256.1| ABC transporter substrate-binding protein [Rhodococcus opacus B4]
gi|226243963|dbj|BAH54311.1| putative ABC transporter substrate-binding protein [Rhodococcus
opacus B4]
Length = 331
Score = 88.7 bits (218), Expect = 9e-16, Method: Composition-based stats.
Identities = 30/309 (9%), Positives = 71/309 (22%), Gaps = 35/309 (11%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP---------------VRFADTGWTDIAATTAMTS 46
+ + T +S A + + + + + +
Sbjct: 19 RRSVGSIALATVAVVSLAACGGGGSDPLSGGGEGSGDDPNAIIVGSANFPESETVANIYT 78
Query: 47 VILEE-ILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWY------------PSLEKFIAP 93
+L T + + +LK+ ID+ Y S A
Sbjct: 79 EVLRANGFDVTTKFNIGSREAYIPALKDGSIDVIPDYTGNLLQYLDPDSTATSAADVDAA 138
Query: 94 YLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGN 152
+L A+ AV + IA +G E
Sbjct: 139 LPAALGSELTITTPAPAEDKDAVVVTKETAERWNLTSIADLAAHSNEVKFGAPAEFQERP 198
Query: 153 QRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYL 212
+ + + + ++ + + + + P + L
Sbjct: 199 GGLPGLKAKYGLDITPDNFVPIADGGGPATVD-ALASGQITAADIFTTSPAIAQNGFVVL 257
Query: 213 PGGEEISGFGEASVYTVVR-SDYLDKCPNISRLLKNIKFSVALENEMMKLILNN-KQDRQ 270
+ +V V+R + DK L K + + + + K +
Sbjct: 258 ADPQNNF--AAQNVVPVLRTTKSSDKLTRALDALSA-KLTTEELVALNNSVSGDAKTEPA 314
Query: 271 FVGRTMLRT 279
+ +
Sbjct: 315 AAAKQWVTD 323
>gi|108799462|ref|YP_639659.1| substrate-binding region of ABC-type glycine betaine transport
system [Mycobacterium sp. MCS]
gi|119868575|ref|YP_938527.1| substrate-binding region of ABC-type glycine betaine transport
system [Mycobacterium sp. KMS]
gi|108769881|gb|ABG08603.1| Substrate-binding region of ABC-type glycine betaine transport
system [Mycobacterium sp. MCS]
gi|119694664|gb|ABL91737.1| Substrate-binding region of ABC-type glycine betaine transport
system [Mycobacterium sp. KMS]
Length = 339
Score = 88.7 bits (218), Expect = 9e-16, Method: Composition-based stats.
Identities = 32/316 (10%), Positives = 74/316 (23%), Gaps = 46/316 (14%)
Query: 1 MYKILAVCLFLTTFSISYA--------------RDADSCTPVRFADTGWTDIAATTAMTS 46
M ++AV L ++ + + +T+ +
Sbjct: 22 MALVMAVLLTVSGCGLGSGSTVPLMVGPGSITPASGLEGVRITVGSKEYTEQVILGYILE 81
Query: 47 VILEEILGYKTNIKLL--AVPVTFRSLKNKGIDIFMGYWYPSLEKFI------------- 91
L G + T + +D+ + + ++
Sbjct: 82 FTLMAA-GAEVRDLTGIVGSRSTREAQLRGQVDVAYEFTGNAWINYLGHEKPIPNAREQF 140
Query: 92 ----APYLEEGSIKLVAENLQGAKYMLAVNDVGFALG---IKSYQDIAKYKKELGAKIYG 144
LE + + Y LA + S AK
Sbjct: 141 EAVRDEDLERNDMVWLDPAPMDDTYALAASKAVIERTGVRTLSQYADLVRTNPAAAKTCV 200
Query: 145 IEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN-IPAVFLSWEPHPI 203
M F + + + I + + +
Sbjct: 201 DTEFRARQDGFPGMAAAYGFDPARAQ----TPILQVGIIYQATADGRQCDFGEVFTTDGR 256
Query: 204 NSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKL 261
+ L++ L ++ SV ++ + + P I+ + + + EM K
Sbjct: 257 IAALDLTVLTDDKQFFAHYNPSVT--MKRSFFEAHPEIAEVTAPVTAALTNEAIIEMNKQ 314
Query: 262 ILNNKQDRQFVGRTML 277
+ +D V R +
Sbjct: 315 VDVEGRDPAVVARDWM 330
>gi|289445358|ref|ZP_06435102.1| osmoprotectant proX [Mycobacterium tuberculosis CPHL_A]
gi|289418316|gb|EFD15517.1| osmoprotectant proX [Mycobacterium tuberculosis CPHL_A]
Length = 315
Score = 88.7 bits (218), Expect = 9e-16, Method: Composition-based stats.
Identities = 33/302 (10%), Positives = 80/302 (26%), Gaps = 31/302 (10%)
Query: 4 ILAVCLFLTTFSISYARDAD-------SCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
+ A T ++ +AD S + + + + + +L+ G+
Sbjct: 12 VAAAVWLATVCLVASCANADPLGSATGSVKSIVVESGDFPESQVIAEIYAQVLQAN-GFD 70
Query: 57 T--NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
+ + + +LK+ ID+ Y L F + E + L
Sbjct: 71 VGRRLGIGSRETYIPALKDHSIDLVPEYIGNLLLYFQPDATVTMLDAVELELYKRLPGDL 130
Query: 115 AVNDVGFALGI------------KSYQDIAKYKKELGAKIYGIEP-GNEGNQRILDMINN 161
++ A + + IA + + + +
Sbjct: 131 SILTPSPASDTDTVTVTAATAARWNLKTIADLAPHSADVKFAAPSAFQTRPSGLPGLRHK 190
Query: 162 NKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
+ + ++ + R + ++ L E
Sbjct: 191 YSLDIAPGNFVTINDGGGAVTV-RALVEGTATAANLFSTSAAIPQNHLVVLEDPEHNFLA 249
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNN-KQDRQFVGRTMLR 278
G ++ +V S + +L + K + A E+ + N D R +R
Sbjct: 250 G--NIVPLVNSRKKSDH--LKDVLDAVSAKLTTAGLAELNAAVSGNSGVDPDQAARKWVR 305
Query: 279 TH 280
+
Sbjct: 306 DN 307
>gi|126435116|ref|YP_001070807.1| substrate-binding region of ABC-type glycine betaine transport
system [Mycobacterium sp. JLS]
gi|126234916|gb|ABN98316.1| Substrate-binding region of ABC-type glycine betaine transport
system [Mycobacterium sp. JLS]
Length = 339
Score = 88.7 bits (218), Expect = 9e-16, Method: Composition-based stats.
Identities = 32/316 (10%), Positives = 74/316 (23%), Gaps = 46/316 (14%)
Query: 1 MYKILAVCLFLTTFSISYA--------------RDADSCTPVRFADTGWTDIAATTAMTS 46
M ++AV L ++ + + +T+ +
Sbjct: 22 MALVMAVLLTVSGCGLGSGSTVPLMVGPGSITPASGLEGVRITVGSKEYTEQVILGYILE 81
Query: 47 VILEEILGYKTNIKLL--AVPVTFRSLKNKGIDIFMGYWYPSLEKFI------------- 91
L G + T + +D+ + + ++
Sbjct: 82 FTLMAA-GAEVRDLTGIVGSRSTREAQLRGQVDVAYEFTGNAWINYLGHEKPIPNAREQF 140
Query: 92 ----APYLEEGSIKLVAENLQGAKYMLAVNDVGFALG---IKSYQDIAKYKKELGAKIYG 144
LE + + Y LA + S AK
Sbjct: 141 EAVRDEDLERNDMVWLDPAPMDDTYALAASKAVVERTGVRTLSQYADLVRTNPAAAKTCV 200
Query: 145 IEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN-IPAVFLSWEPHPI 203
M F + + + I + + +
Sbjct: 201 DTEFRARQDGFPGMAAAYGFDPARAQ----TPILQVGIIYQATADGRQCDFGEVFTTDGR 256
Query: 204 NSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKL 261
+ L++ L ++ SV ++ + + P I+ + + + EM K
Sbjct: 257 IAALDLTVLTDDKQFFAHYNPSVT--MKRSFFEAHPEIAEVTAPVTAALTNEAIIEMNKQ 314
Query: 262 ILNNKQDRQFVGRTML 277
+ +D V R +
Sbjct: 315 VDVEGRDPAVVARDWM 330
>gi|158312021|ref|YP_001504529.1| substrate-binding region of ABC-type glycine betaine transport
system [Frankia sp. EAN1pec]
gi|158107426|gb|ABW09623.1| Substrate-binding region of ABC-type glycine betaine transport
system [Frankia sp. EAN1pec]
Length = 344
Score = 88.7 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 38/290 (13%), Positives = 82/290 (28%), Gaps = 36/290 (12%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSL-KNK 74
S + AD G+T+ M +L GYK + +S ++
Sbjct: 59 CGDGSGGASLGSLTVADAGFTESKILADMYGELLTNA-GYKVERTSVQSTEIAQSSLESG 117
Query: 75 GIDIFMGYWYPSLE-----------------------KFIAPYLEEGSIKLVAENLQGAK 111
ID Y + + + + ++ +
Sbjct: 118 QIDAMPQYVATYADLLNSQVNGSGATSVSSSDLNASLAGLRRLAKGLGLSVLEPADAVDQ 177
Query: 112 YMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
AV+ A + G E + + +K +
Sbjct: 178 NAFAVSRSFAAEHHLTTLTDLGASGLTVKLAAGAE---CATRPFCQPGLEKTYGIKISEI 234
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVR 231
+E + +Q + R+N + L + N+ L +++ ++ +V
Sbjct: 235 VE--TGVATAQTKAAVRDNTAQLGLVLTTDATVNGYNLVVLTDDKKL--QNADNLVPIVN 290
Query: 232 SDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+D L P I+ L + + A E+ K + ++ + V L
Sbjct: 291 TDSL--APEITSALNALAPVLTTADLAELNKRVDAEREKSEEVAHDFLAE 338
>gi|83943286|ref|ZP_00955746.1| ABC transporter, periplasmic substrate-binding protein
[Sulfitobacter sp. EE-36]
gi|83846294|gb|EAP84171.1| ABC transporter, periplasmic substrate-binding protein
[Sulfitobacter sp. EE-36]
Length = 304
Score = 88.7 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 33/276 (11%), Positives = 78/276 (28%), Gaps = 28/276 (10%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPVTFRSLKNKGIDIFMGYWY 84
+ + T+ + ++ LE+ G ++L V +L + IDI+ Y
Sbjct: 25 DITVSSKIDTEGGLLGNVIALALEDA-GLPVERRLQLGGTRVVREALLSGQIDIYPEYTG 83
Query: 85 PSLEKFIAPYLEEGS------------------IKLVAENLQGAKYMLAVNDVGFALGIK 126
+ F + + + + +AV
Sbjct: 84 NAAFFFNEADSDVWKDAEAAHARAAELDSTQNDVTWLTSAPANNTWAIAVTGPVAQDNNL 143
Query: 127 SYQDIAKYKKE--LGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
+ K+ + M + F L + + S + + I+
Sbjct: 144 TTMSDFGAWVAQGGTVKLAASTEFVSSPAVLPAMQDTYGFELNADQTVILSGGDTAATIQ 203
Query: 185 RDQR-NNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
R + + + + + + + +VR++ L + P+I
Sbjct: 204 AAARGTSGVNAAMVYGTDGGVGATGLVVMEDDKGV--QPVYEPAPIVRAEVLAEYPSIPE 261
Query: 244 LLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
+L I +A ++ I + + V R L
Sbjct: 262 VLNPIFEGLDMATLQKLNGRIQVGGEPAEAVARDYL 297
>gi|297192925|ref|ZP_06910323.1| amino acid ABC transporter amino acid-binding protein [Streptomyces
pristinaespiralis ATCC 25486]
gi|297151561|gb|EDY66577.2| amino acid ABC transporter amino acid-binding protein [Streptomyces
pristinaespiralis ATCC 25486]
Length = 331
Score = 88.7 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 31/294 (10%), Positives = 78/294 (26%), Gaps = 38/294 (12%)
Query: 14 FSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFR-SLK 72
S + + +T+ + + +L + GYKT+I + + SL+
Sbjct: 40 AGASPGSGSGKKGTLVVGAAAFTESKVLAELYAQLLGDA-GYKTSITTVKNRELYEPSLE 98
Query: 73 NKGIDIFMGYWYP--------------------------SLEKFIAPYLEEGSIKLVAEN 106
ID+ Y S K + E +K++
Sbjct: 99 KGEIDVVPEYAATLAEFLNAKVNGPKAPEEKPVASGDVTSTVKELTKLAEPLGLKVLPAG 158
Query: 107 LQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSL 166
+ AV + ++ + E +
Sbjct: 159 EAVDQNAFAVTKEFAEKNKL--KTLSDLGRSKRPVKIAAGDECEVRPFCAPGLKKTYGID 216
Query: 167 KGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV 226
+ Q ++ ++ + L++ + + L +++ ++
Sbjct: 217 VAG---IDPKGVGTPQAKQAVKDGEDDMVLTYTTDGTLASYGLVLLEDDKKL--QNADNI 271
Query: 227 YTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLR 278
VV + I+ +L + + EM + + + V + L
Sbjct: 272 LPVVNAKDAGSA-EIADVLAGLTKVLTTEDLAEMNRKVDGERAKPADVAKAYLE 324
>gi|225022425|ref|ZP_03711617.1| hypothetical protein CORMATOL_02464 [Corynebacterium matruchotii
ATCC 33806]
gi|305680495|ref|ZP_07403303.1| ABC transporter, substrate-binding protein, QAT family
[Corynebacterium matruchotii ATCC 14266]
gi|224944782|gb|EEG25991.1| hypothetical protein CORMATOL_02464 [Corynebacterium matruchotii
ATCC 33806]
gi|305660026|gb|EFM49525.1| ABC transporter, substrate-binding protein, QAT family
[Corynebacterium matruchotii ATCC 14266]
Length = 324
Score = 88.7 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 30/310 (9%), Positives = 73/310 (23%), Gaps = 37/310 (11%)
Query: 1 MYKILAVCLFLTT--------------FSISYARDADSCTPVRFADTGWTDIAATTAMTS 46
+ K L V + + + + + + + + +
Sbjct: 9 LRKSLIVIITMALGFTCLVGCGLKSDPLANNSNSKDNPGDAIVVGSQDYYSNEIIAEIYA 68
Query: 47 VILEEILGYKTNIKL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA 104
LE+ GY K ++ GID+F Y L+ + +
Sbjct: 69 QSLEKN-GYTVQRKFRIGQREAYLPEIEKGGIDVFPEYTGNLLQYWKKDTTARDETAVYD 127
Query: 105 ENLQGAKYMLAVNDVGFA------------LGIKSYQDIAKYKKELGAKIYGIEPGNEGN 152
E L V + A + Q + + G
Sbjct: 128 ELKTAVPAGLTVLNDAKATDQDAYVVREDFAHEHNIQSLDNLSGIDELTLGGNSELETRP 187
Query: 153 QRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYL 212
+ + + + ++ + + ++ + P N+ L
Sbjct: 188 YGPTGLKETYGINTRFVPIEDSGGPLTM----KALKDGTINLAKINTASPDIHTNNLVVL 243
Query: 213 PGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
+ + + V +V K ++ ++ + M +
Sbjct: 244 SDPKHLML--ASHVVPLVSDRLPQKAQDVINSIQQ-SLTAEDLLAMNVD-SVGGAKASDI 299
Query: 273 GRTMLRTHPD 282
L TH
Sbjct: 300 ASQWLSTHQQ 309
>gi|85375187|ref|YP_459249.1| ABC transporter permease protein [Erythrobacter litoralis HTCC2594]
gi|84788270|gb|ABC64452.1| ABC transporter permease protein [Erythrobacter litoralis HTCC2594]
Length = 517
Score = 88.4 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 30/290 (10%), Positives = 73/290 (25%), Gaps = 34/290 (11%)
Query: 7 VCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL-AVP 65
+ +F + +++ D + A +++ + LE+ GY +
Sbjct: 230 LGIFASAWALYGPSGEDDDDTIVIAAKQFSEQYILARLIGGQLEKA-GYNIEYRDGLGSA 288
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE----------------EGSIKLVAENLQG 109
V ++ IDI + Y +A + ++ +
Sbjct: 289 VVHNAVSTGAIDISIDYTGTIWTNNLARQDNPGRDAMYRIIKQWEAEQTGTLVLGKLGFE 348
Query: 110 AKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
Y L + + I + G +P + + +
Sbjct: 349 NAYGLGMREDRAEK--LGVTGIGDLTPIASRLVTGGDPEWFERPEWIAVRDAYGLEF--- 403
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV 229
S + + ++ V ++ + NI L ++ +
Sbjct: 404 ---ARQRNFSPTFMYNALKSGEADVISAYTSDGRIAADNIRILDDPKQAL--PSYDAMIM 458
Query: 230 VRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILN---NKQDRQFVGR 274
+ D D + L+ + V L E + K
Sbjct: 459 IAPDRADDE-RLIAALEPLLGAIDVELMREANLSVDRTDGQKMSPDQAAA 507
>gi|15887552|ref|NP_353233.1| ABC transporter, substrate binding protein
(proline/glycine/betaine) [Agrobacterium tumefaciens
str. C58]
gi|15155085|gb|AAK86018.1| ABC transporter, substrate binding protein
(proline/glycine/betaine) [Agrobacterium tumefaciens
str. C58]
Length = 303
Score = 88.4 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 46/307 (14%), Positives = 95/307 (30%), Gaps = 35/307 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-- 58
M +++ + + S + V + T+ + +L + K
Sbjct: 1 MNRLMTLTGAGLALAFSVSIAQAQ---VVVSSKIDTEGGVLGNIILAVLNQN---KIETT 54
Query: 59 --IKLLAVPVTFRSLKNKGIDIFMGYWYPS------------------LEKFIAPYLEEG 98
I+L A PV +++ IDI+ Y + E+ +
Sbjct: 55 DRIQLGATPVVRKAITAGEIDIYPEYTGNAAFFFSKADDPLWKDAAKGYEEAKTLDYDAN 114
Query: 99 SIKLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILD 157
I +A + + +A+ +K+ D KY G + + L
Sbjct: 115 KIVWLAPSPANNTWAIALRKDVADKNNLKTLSDFGKYVAGGGTVVLAASSEFVNSAAALP 174
Query: 158 MINN-NKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF-LSWEPHPINSDLNIHYLPGG 215
F++K +LI S + + I A + + + + L
Sbjct: 175 AFQTTYGFTMKPDQLITLSGGDTAATIAAAANQTNNANAAMVYGTDGGIAPSGLVVLED- 233
Query: 216 EEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVG 273
+ ++R + L K PNI LLK + K +A ++ + + + V
Sbjct: 234 -DKHVQPVYQPAPIIREEVLKKHPNIEELLKPVFEKLDLATLQDLNARVQVGGEQAKTVA 292
Query: 274 RTMLRTH 280
L +
Sbjct: 293 MDFLTKN 299
>gi|256833472|ref|YP_003162199.1| Substrate-binding region of ABC-type glycine betaine transport
system [Jonesia denitrificans DSM 20603]
gi|256687003|gb|ACV09896.1| Substrate-binding region of ABC-type glycine betaine transport
system [Jonesia denitrificans DSM 20603]
Length = 306
Score = 88.4 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 31/278 (11%), Positives = 73/278 (26%), Gaps = 25/278 (8%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKN 73
+ A + S + + + LE GY+ + +++
Sbjct: 30 PTQASGSGSSEAIVIGSQDYYSSEIIAETYAQALESH-GYEVQRDFRIGQREIYMSDVES 88
Query: 74 KGIDIFMGYWYPSLEKFIAP--------------YLEEGSIKLVAENLQGAKYMLAVNDV 119
+D+F Y P L+ + SI ++ ++ + V
Sbjct: 89 GKLDLFPEYTGPLLQYWQPDTEARLSEDVYEALVAAAPESISVLDQSPATDQDSYVVTQE 148
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+ IA K + G E + F IE
Sbjct: 149 FAQEYGLT--TIADLAKVDEPLVLGGNSELETRPNGPSGLKEFYGVEVSFTPIEDGGGPL 206
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+ ++ + + + P N+ L E + + V + +
Sbjct: 207 T---VKALQDGDVQLAVIYTADPSIDRNNLVTLEDPEGLFL--ASHVVPLASDNVDADAR 261
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTML 277
+ + S + E+ + ++ + + R L
Sbjct: 262 AVINEISA-AMSPEILRELNDRSITDQAPAETIARDWL 298
>gi|149374637|ref|ZP_01892411.1| Periplasmic glycine betaine/choline-binding (lipo)protein of an
ABC-type transport system (osmoprotectant binding
[Marinobacter algicola DG893]
gi|149361340|gb|EDM49790.1| Periplasmic glycine betaine/choline-binding (lipo)protein of an
ABC-type transport system (osmoprotectant binding
[Marinobacter algicola DG893]
Length = 299
Score = 88.4 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 39/294 (13%), Positives = 84/294 (28%), Gaps = 28/294 (9%)
Query: 10 FLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPVT 67
+ A A + PV + T+ A M LEE ++L A +
Sbjct: 4 AAAFTLVLIAGPAMAADPVVVSSKIDTEGAVLGQMILQTLEEA-DIPVENRLQLGATSIV 62
Query: 68 FRSLKNKGIDIFMGYWYP------------------SLEKFIAPYLEEGSIKLVAENLQG 109
++K ID++ Y + E+ + + +I +
Sbjct: 63 RNAIKAGEIDLYPEYTGNAAFFHDQADRDIWKDADKAYEQAASLDKKAHNIVWLTPAKAN 122
Query: 110 AKYMLAVNDVGFALGIKSYQDIAKYKKE--LGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
+ ++V + + K E + F L
Sbjct: 123 NTWAMSVRGDLARDNGLNTLEDLASYINGGGAFKFAASAEFVESASALPAFQEAYGFKLG 182
Query: 168 GFRLIEASEL-ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV 226
+L+ S + + +N +++ S L++ + +
Sbjct: 183 SDQLLILSGGNTAATLRAAALTDNDVNGAMTYGTDGGLSALDLKVMEDTLGV--QPVYQP 240
Query: 227 YTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
+VR++ L+ PNI +L + + + + N + V R L
Sbjct: 241 APIVRAEVLETYPNIREVLAPVFESLDLETLQRLNGQVAVNGVPAEAVARDYLD 294
>gi|270262698|ref|ZP_06190969.1| transporter [Serratia odorifera 4Rx13]
gi|270043382|gb|EFA16475.1| transporter [Serratia odorifera 4Rx13]
Length = 294
Score = 88.4 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 40/299 (13%), Positives = 90/299 (30%), Gaps = 30/299 (10%)
Query: 1 MYKILAVCLFLTTFS-ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEI-LGYKTN 58
+ +LAV LF A AD+ + + + + L + +T
Sbjct: 3 LKNLLAVALFSAAVVHAPVALSADAGGTIIIGSADFPESQLLATIYEQALAAKNVKVETK 62
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEE--------------GSIKLVA 104
+ + + V +L + I + Y +L IK++
Sbjct: 63 LNIGSREVYMPALLDGSISLIPEYSGATLSYLDEKTQAHSSEDVAAALAKALPEKIKMLD 122
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGN-EGNQRILDMINNNK 163
+ + +LAV + + +DI+ + G + + +
Sbjct: 123 ISAAQDRDVLAVTEKTAKKY--NLKDISDLAPIAKTLVLGGPAEWKTRREGVRGLSEVYG 180
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+ K F++++ + + NN V P N+ L F
Sbjct: 181 LTFKNFKVLDVAGPLTL----SALTNNQIQVADMTSTDPAIKTKNLVALEDS--KHLFPA 234
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
++ ++ D + + LK + + + + M + N + V + L H
Sbjct: 235 QNIVPLIAKDKASE--VVETTLKAVSAQLTTSDLIVMNGKLA-NFESVDAVAKEWLTQH 290
>gi|311743298|ref|ZP_07717105.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Aeromicrobium marinum DSM
15272]
gi|311313366|gb|EFQ83276.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, binding protein [Aeromicrobium marinum DSM
15272]
Length = 296
Score = 88.4 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 30/284 (10%), Positives = 71/284 (25%), Gaps = 27/284 (9%)
Query: 13 TFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILE-EILGYKTNIKLLAVPVTFRSL 71
+ D V + + + + LE E + ++ + V ++L
Sbjct: 17 FTLSACGGDPTDGDGVTIGSAAFAENEIIAEVYAQALEAEGIDVNRQFQIGSREVYLQAL 76
Query: 72 KNKGIDIFMGYWY--------------PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
++ +DI Y P + + + ++ K L V
Sbjct: 77 ESGEVDIIPEYTGNLLSFYDPETTAATPEEVEDALDDVLPDELDILEPADAENKDSLNVT 136
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
+ IA ++ + + + + F
Sbjct: 137 REFAETNGVT--SIADLATLDSVRLVANPEFEQRPYGLPGLEAVYGLTNIVFESNSDYGG 194
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDK 237
+ + V + P + ++ L E + +V ++R D
Sbjct: 195 PDT---LKTLLDGRADVADIYTTTPSIVENDLVTLEDPEGLIL--SQNVVPLIRDSVDDD 249
Query: 238 CPNISRLLKNI--KFSVALENEMMKLIL-NNKQDRQFVGRTMLR 278
I +L I + E + K + + L
Sbjct: 250 --RIEDVLDRISAQLKTEDLLEFNIRNSGDEKAAPATIAKEWLE 291
>gi|296444863|ref|ZP_06886825.1| Substrate-binding region of ABC-type glycine betaine transport
system [Methylosinus trichosporium OB3b]
gi|296257531|gb|EFH04596.1| Substrate-binding region of ABC-type glycine betaine transport
system [Methylosinus trichosporium OB3b]
Length = 497
Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/268 (10%), Positives = 63/268 (23%), Gaps = 26/268 (9%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL--AVPVTFRSLKNKGIDIFMGYWY 84
VR + + A + + L G +L + + +L ID++ Y
Sbjct: 23 DVRIGSKTFVESAIVAEIAAD-LAVASGADVERRLGLGGTRLLWNALIAGEIDVYPEYTG 81
Query: 85 PSLEKFIAPYLEE-----------GSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAK 133
++ +A I+ G Y L + +
Sbjct: 82 TLKQEILADQNVSTAAEIENALATHGIRASLPLGFGNSYALGMRRDRAEALRIASISDLA 141
Query: 134 YKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPA 193
+ EL + + + + + +
Sbjct: 142 RRTELSFGL--SQEFLARADGWPALALAYGLD------PDTVRGLDHHLAYKGLIDGSID 193
Query: 194 VFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFS 251
V + P +D I L E + R+D + P + + +
Sbjct: 194 VMDLYTTDPEFADRRILVLDDDRRFFI--ENRAVLLYRADLAQRAPKALAAMLRLEGRIE 251
Query: 252 VALENEMMKLILNNKQDRQFVGRTMLRT 279
+ M + + + +
Sbjct: 252 TSAMIAMNVAVKTGLRSEREAAANFVAK 279
>gi|220918469|ref|YP_002493773.1| Substrate-binding region of ABC-type glycine betaine transport
system [Anaeromyxobacter dehalogenans 2CP-1]
gi|219956323|gb|ACL66707.1| Substrate-binding region of ABC-type glycine betaine transport
system [Anaeromyxobacter dehalogenans 2CP-1]
Length = 489
Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/268 (11%), Positives = 67/268 (25%), Gaps = 28/268 (10%)
Query: 28 VRFADTGWTDIAATTAMTSVILEEILGYKTNIK-LLAVPVTFRSLKNKGIDIFMGYWYP- 85
VR +T+ + + + + L V + +L ID++ Y
Sbjct: 16 VRVGSKAFTESVVLGEIVAQTAASTGTAAVHRRALGGTRVVWEALTRGEIDVYPEYTGTL 75
Query: 86 ----------SLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL-GIKSYQDIAKY 134
+ + + L + + A Y L + GI++ D+ ++
Sbjct: 76 VREILAGEPIADDAALRRALSARGVGVAAVLGFDNTYALGMRRAAAERLGIRTISDLLRH 135
Query: 135 KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI-RRDQRNNIPA 193
+D + + L +S + R
Sbjct: 136 PGL----------RFGFTNEFVDRADGWPALRSRYGLSASSVRGLDHDLAYRALAEGALD 185
Query: 194 VFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFS 251
V + + L++ L + R D + P ++ + +
Sbjct: 186 VVDLYSTDAQIAQLDLSALDDDRRAF--PRYDAVILQRLDLDARAPAAVAAIRRLAGTIT 243
Query: 252 VALENEMMKLILNNKQDRQFVGRTMLRT 279
M + D V L
Sbjct: 244 AREMTAMNARVQLEHADPGEVAAAFLAE 271
>gi|320095309|ref|ZP_08026999.1| proline/glycine/betaine/choline ABC superfamily ATP binding
cassette transporter [Actinomyces sp. oral taxon 178
str. F0338]
gi|319977748|gb|EFW09401.1| proline/glycine/betaine/choline ABC superfamily ATP binding
cassette transporter [Actinomyces sp. oral taxon 178
str. F0338]
Length = 292
Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 36/277 (12%), Positives = 75/277 (27%), Gaps = 14/277 (5%)
Query: 11 LTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTF 68
+ S A S + + + LE G+ N ++ V
Sbjct: 20 ACGSASSLEGSAPSGEALTIGSQDYYSNEIIAEAYAQALEGA-GFAVNRQMRIGQREVYM 78
Query: 69 RSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSY 128
+ ID+F Y L+ A E S + + L D A SY
Sbjct: 79 PEVAKGTIDVFPEYTGNLLQYLKADATETTSEDVYRALAEAMPEGLRALDQAGATDQDSY 138
Query: 129 QDIAKYKKELGAKIYGIEPGNE-GNQRILDMINNNKFSLKGFRLIEASELASFS------ 181
++ + G G + + +G +
Sbjct: 139 VVSEEFAQLHSLTSIGDLAGAGTVVLGGNSELETRPYGPEGLASVYGVTATFTPIEDSGG 198
Query: 182 -QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ R+ V + +P+ ++ + L E + + V +V S ++
Sbjct: 199 RLAAKALRDGTVQVADIYSSNPVLAEGGLRVLQDPEGLFL--ASHVVPIVSSKVDERAAA 256
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTML 277
+ + + EM + ++ + R L
Sbjct: 257 VINSVSA-ALTPEALIEMNRQSTAEQKSAADIARAWL 292
>gi|167588160|ref|ZP_02380548.1| ABC glycine betaine/choline transporter, periplasmic ligand binding
protein [Burkholderia ubonensis Bu]
Length = 307
Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 37/269 (13%), Positives = 77/269 (28%), Gaps = 28/269 (10%)
Query: 36 TDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP 93
T+ + +L+ G I L A P+ ++L + IDI+ Y + F
Sbjct: 37 TEGNLLGNLIVQVLKAH-GIPVTEKIALGATPIVRKALVSGEIDIYPEYTGNAAFFFNKA 95
Query: 94 YLEEGS------------------IKLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKY 134
+ + + + +AV +K++ D K+
Sbjct: 96 DDPVWKNASQGYDAAKKLDYAANHLVWLTPSPANNTWGVAVLAPLAQAQRLKTFSDFGKW 155
Query: 135 KKEL-GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRN-NIP 192
K+ + F LK +L+ S + + I+ +
Sbjct: 156 VAGGGKVKLAASAEFVNSASALPSFEKAYGFKLKPDQLVVLSGGDTAATIKAAANQTDGV 215
Query: 193 AVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KF 250
+ + + + L + + V+R L P I+ LK +
Sbjct: 216 NAAMVYGTDGGIAASGLAVLDD--DKHVQPVYAPAPVIRETVLKAHPQIADYLKPVFASL 273
Query: 251 SVALENEMMKLILNNKQDRQFVGRTMLRT 279
+ + I N + V L+
Sbjct: 274 DLKTLQTLNSRIQINGEPAAGVAAQYLKA 302
>gi|296166877|ref|ZP_06849294.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, substrate-binding protein [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295897754|gb|EFG77343.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, substrate-binding protein [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length = 315
Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/296 (10%), Positives = 76/296 (25%), Gaps = 26/296 (8%)
Query: 5 LAVCLFLTTFSIS--YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
L L S + + + + + + + + L+ G++ +
Sbjct: 18 LTAICALAACSSADPLGAEVRNPRNIVVGSGDFPESQIIAEIYAQALQTN-GFEVGRRMG 76
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ + +LK+ ID+ Y L F + E + LA+
Sbjct: 77 IGSRETYIPALKDHSIDLVPEYIGNLLLYFAPESTATLLDAVELELDRRLPGDLAILTPS 136
Query: 121 FA------------LGIKSYQDIAKYKKELGAKIYGIEP-GNEGNQRILDMINNNKFSLK 167
A + IA +G + + ++
Sbjct: 137 PASDTDTVTVTGGTANSWKLRTIADLAAHSADVRFGAPSAFANRPSGLPGLRQKYGLDIR 196
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
+ + + R + P ++ L E+ G ++
Sbjct: 197 PGNFVAIDDGGGAVTV-RALLEGRVNAANVFTTSPAIPQNHLVVLDDPEQNFLAG--NIV 253
Query: 228 TVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNN-KQDRQFVGRTMLRTH 280
+V S + +L + + + + + N D R LR +
Sbjct: 254 PLVNSQKKSD--RLKEVLDAVSGRLTTSGVAGLNAAVAGNSGIDPDQAARNWLRDN 307
>gi|297519355|ref|ZP_06937741.1| glycine betaine transporter periplasmic subunit [Escherichia coli
OP50]
Length = 207
Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 23/192 (11%), Positives = 60/192 (31%), Gaps = 24/192 (12%)
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
L + + A + G PG I + + + + + A
Sbjct: 10 AQLKDPKIAKLFDTNGDGKADLTGCNPGWGCEGAINHQLAAYELT-HTVTHNQGNYAAMM 68
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSD----LNIHYLPGGEEI----------------SG 220
+ + P + +W P+ ++++ ++ +L G
Sbjct: 69 ADTISRYKEGKPVFYYTWTPYWVSNELKPGKDVVWLQVPFSALPGDKNADTKLPNGANYG 128
Query: 221 FGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV---GRTML 277
F ++++ V + +K P ++L ++ VA N ++ + K + +
Sbjct: 129 FPVSTMHIVANKAWAEKNPAAAKLFAIMQLPVADINAQNAIMHDGKASEGDIQGHVDGWI 188
Query: 278 RTHPDLLKNWLI 289
+ H W+
Sbjct: 189 KAHQQQFDGWVN 200
>gi|314922211|gb|EFS86042.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL001PA1]
gi|314965293|gb|EFT09392.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL082PA2]
gi|314982449|gb|EFT26542.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL110PA3]
gi|315090560|gb|EFT62536.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL110PA4]
gi|315094053|gb|EFT66029.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL060PA1]
gi|315104436|gb|EFT76412.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL050PA2]
gi|327329390|gb|EGE71150.1| glycine betaine/choline-binding protein of an ABC-type transport
system [Propionibacterium acnes HL103PA1]
Length = 311
Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/275 (10%), Positives = 74/275 (26%), Gaps = 20/275 (7%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI--KLLAVPVTFRSLKNKGID 77
+ +T+ + + LEE +G ++ A V ++L++ +D
Sbjct: 37 GSGSGSADLIVGSANFTESEIIAEVYAQSLEE-VGITVKRRMQIGARDVYVKALQDGSVD 95
Query: 78 IFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSY--------- 128
+ Y L+ F ++A + L+V + A S+
Sbjct: 96 LVPEYSGNLLQFFQGASSSSDEKSVMAALRKAVPAGLSVGEPSAAQDADSWCVTTEFSQT 155
Query: 129 ---QDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
+ K+ G E + + S+ + + +
Sbjct: 156 HKVTSLTDLATLDSLKVGGNPELKERPYGPKGLTKAYGVPSSIVKFTALSDSSGPLTV-K 214
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
+ + + P + ++ L +V ++R DK +
Sbjct: 215 ALTSGTVDLVDLYTTTPAIKEQHLVVLSDP--KHLIVPQNVVPLLRKKVDDKARAQLARV 272
Query: 246 KNIKFSVALENEMMKLIL-NNKQDRQFVGRTMLRT 279
+ M + + K + + L
Sbjct: 273 SK-ALTTDDLIGMNQRFQGDEKASATTIAKDWLAQ 306
>gi|282853468|ref|ZP_06262805.1| ABC transporter, substrate-binding protein, QAT family
[Propionibacterium acnes J139]
gi|282582921|gb|EFB88301.1| ABC transporter, substrate-binding protein, QAT family
[Propionibacterium acnes J139]
Length = 307
Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/275 (10%), Positives = 74/275 (26%), Gaps = 20/275 (7%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI--KLLAVPVTFRSLKNKGID 77
+ +T+ + + LEE +G ++ A V ++L++ +D
Sbjct: 33 GSGSGSADLIVGSANFTESEIIAEVYAQSLEE-VGITVKRRMQIGARDVYVKALQDGSVD 91
Query: 78 IFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSY--------- 128
+ Y L+ F ++A + L+V + A S+
Sbjct: 92 LVPEYSGNLLQFFQGASSSSDEKSVMAALRKAVPAGLSVGEPSAAQDADSWCVTTEFSQT 151
Query: 129 ---QDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
+ K+ G E + + S+ + + +
Sbjct: 152 HKVTSLTDLATLDSLKVGGNPELKERPYGPKGLTKAYGVPSSIVKFTALSDSSGPLTV-K 210
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
+ + + P + ++ L +V ++R DK +
Sbjct: 211 ALTSGTVDLVDLYTTTPAIKEQHLVVLSDP--KHLIVPQNVVPLLRKKVDDKARAQLARV 268
Query: 246 KNIKFSVALENEMMKLIL-NNKQDRQFVGRTMLRT 279
+ M + + K + + L
Sbjct: 269 SK-ALTTDDLIGMNQRFQGDEKASATTIAKDWLAQ 302
>gi|322833073|ref|YP_004213100.1| Substrate-binding region of ABC-type glycine betaine transport
system [Rahnella sp. Y9602]
gi|321168274|gb|ADW73973.1| Substrate-binding region of ABC-type glycine betaine transport
system [Rahnella sp. Y9602]
Length = 294
Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 39/299 (13%), Positives = 90/299 (30%), Gaps = 30/299 (10%)
Query: 1 MYKILAVCLFLTTFSISYAR-DADSCTPVRFADTGWTDIAATTAMTSVILEEI-LGYKTN 58
+ +LAV LF + A A++ + + + + L + +T
Sbjct: 3 LKNLLAVALFSAAVVHAPAAFSAETGGTIIIGSADFPESQLIATIYQQALAAKNVKVETK 62
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP--------------YLEEGSIKLVA 104
+ + + V +L + I++ Y +L IK++
Sbjct: 63 LNIGSREVYMPALLDGSINLIPEYSGATLSYLDEKTQAHSAEDVAAALAKALPEKIKMLD 122
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGN-EGNQRILDMINNNK 163
+ +LAV + + +DI+ + G + + +
Sbjct: 123 ISAAQDSDVLAVTEKTAKKY--NLKDISDLAPVAKTLVLGGPAEWKTRREGVKGLNEVYG 180
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+ K F++++ + + NN V P N+ L F
Sbjct: 181 LTFKNFKVLDVAGPLTL----SALTNNQIQVADMTSTDPAMKTKNLVALEDS--KHLFPA 234
Query: 224 ASVYTVVRSDYLDKCPNISRLLKN--IKFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
++ ++ D + + L N + + + M + N + V + L H
Sbjct: 235 QNIVPLIAKDKASE--VVETTLNNVSRQLTTSDLIVMNGKLA-NFESVDAVAKEWLTGH 290
>gi|312138893|ref|YP_004006229.1| glycine/betaine ABC transporter substrate-binding protein
[Rhodococcus equi 103S]
gi|325676400|ref|ZP_08156078.1| amino acid ABC superfamily ATP binding cassette transporter,
binding protein [Rhodococcus equi ATCC 33707]
gi|311888232|emb|CBH47544.1| putative ABC-type glycine betaine transporter substrate binding
lipoprotein [Rhodococcus equi 103S]
gi|325552578|gb|EGD22262.1| amino acid ABC superfamily ATP binding cassette transporter,
binding protein [Rhodococcus equi ATCC 33707]
Length = 315
Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 20/279 (7%), Positives = 68/279 (24%), Gaps = 24/279 (8%)
Query: 18 YARDADSCTPVRFADTGWTDIAATTAMTSVILEE-ILGYKTNIKLLAVPVTFRSLKNKGI 76
+ + + + + L+ +T + + + V +L++ +
Sbjct: 34 SGGSGGDTDAIVVGSANFPESETVAFVYAEALQANGFDVQTRMNIGSREVYIPALRDGSL 93
Query: 77 DIFMGYWYP--------------SLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
+ Y + P + + K + V
Sbjct: 94 TLIPDYTGNLLEYIDSASTATTAAEIDAALPAALAPDLAITTPAPAEDKDAVVVTRETAE 153
Query: 123 LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ E + + + N + + + +
Sbjct: 154 KWNLTSIADLAAHSA-EVTFAAPAEFQERSVGLPGLRENYGLDIAPANFVPIGDGGGPAT 212
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ + + + P ++ L +V ++R+ +S
Sbjct: 213 V-KALTSGQVTAANIFTTSPAIEANDLVVLTDPANNF--PAQNVVPLMRASAKTD--QLS 267
Query: 243 RLLKNI--KFSVALENEMMKLILNN-KQDRQFVGRTMLR 278
R+L + K + ++ + + K + Q + +
Sbjct: 268 RVLDAVSAKLTTEELVDLNDAVSGDSKTEPQAAAKQWVA 306
>gi|300781611|ref|ZP_07091465.1| ABC superfamily ATP binding cassette transporter, substrate-binding
protein [Corynebacterium genitalium ATCC 33030]
gi|300533318|gb|EFK54379.1| ABC superfamily ATP binding cassette transporter, substrate-binding
protein [Corynebacterium genitalium ATCC 33030]
Length = 308
Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 24/275 (8%), Positives = 65/275 (23%), Gaps = 25/275 (9%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEE-ILGYKTNIKLLAVPVTFRSLKNKGIDIFMGY 82
+ + + + + + L + + + V +L++ + + Y
Sbjct: 35 ASGDIVIGTANFPEAEIIGQIWAAALSDAGFDVDVASGIGSREVYMTALEDGDVTVVPEY 94
Query: 83 WYPSLEKFIAPYLEEGSIKLVAENLQGAKYML------------AVNDVGFALGIKSYQD 130
+ + + A Q
Sbjct: 95 AGNLAAFYDDLPEGADEQTIRDTLASSLPETIEVGEFSPAESADAYRVTAETAADNDIQT 154
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
IA K + E + + R+ S+ + +
Sbjct: 155 IADLDKLDQITVAAPPEFAERRYGPPGLTSVYGIDPSKIRVKPISDAGGPLTV-QALVEG 213
Query: 191 IPAVFLSWEPHPINS----DLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLK 246
+ P + ++ L + +V V+R+ L P +L
Sbjct: 214 AAETANIFTTSPAITGKGDRPDLVILEDPLNL--IPPQNVVPVIRAGQLP--PEALDVLN 269
Query: 247 NI--KFSVALENEMMKL-ILNNKQDRQFVGRTMLR 278
N+ + EM + + + + + R +
Sbjct: 270 NVNASLTTDDLVEMNLRNVGDERAEPAVIARDWVD 304
>gi|325291639|ref|YP_004277503.1| proline/glycine/betaine ABC transporter substrate-binding protein
[Agrobacterium sp. H13-3]
gi|325059492|gb|ADY63183.1| proline/glycine/betaine ABC transporter, substrate binding protein
[Agrobacterium sp. H13-3]
Length = 303
Score = 87.2 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 45/305 (14%), Positives = 96/305 (31%), Gaps = 31/305 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-- 58
M +++ + ++S + V + T+ + +L + +T
Sbjct: 1 MNRLMMLTGAGFALALSVSFAQAQ---VVVSSKIDTEGGVLGNIILAVLNKN-NIETTDR 56
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPS------------------LEKFIAPYLEEGSI 100
I+L A PV +++ IDI+ Y + ++ + I
Sbjct: 57 IQLGATPVVRKAITAGEIDIYPEYTGNAAFFFSKADDPLWKDAAKAYQEAKTLDYDANKI 116
Query: 101 KLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI 159
+ + + +A+ +K+ D KY G + + L
Sbjct: 117 VWLTPSPANNTWAIALRKDVADKNNLKTLSDFGKYIAGGGEVVLAASSEFVNSAAALPAF 176
Query: 160 NN-NKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF-LSWEPHPINSDLNIHYLPGGEE 217
F++K +LI S + + I A + + + + L +
Sbjct: 177 QTTYGFTMKPDQLITLSGGDTAATIAAAANQTNNANAAMVYGTDGGIAPSGLVVLED--D 234
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
++R + L K PNI LLK + K +A E+ + + + V
Sbjct: 235 KHVQPVYQPAPIIREEVLKKNPNIETLLKPVFEKLDLATLQELNARVQVGGEQAKAVATD 294
Query: 276 MLRTH 280
L +
Sbjct: 295 FLTKN 299
>gi|85714713|ref|ZP_01045700.1| Substrate-binding region and inner membrane component of ABC-type
glycine betaine transport system [Nitrobacter sp.
Nb-311A]
gi|85698598|gb|EAQ36468.1| Substrate-binding region and inner membrane component of ABC-type
glycine betaine transport system [Nitrobacter sp.
Nb-311A]
Length = 470
Score = 87.2 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 38/299 (12%), Positives = 76/299 (25%), Gaps = 35/299 (11%)
Query: 2 YKILAVCLFLTTFSISYARDADS----CTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
+I L ++ A A S + +T+ A+ S L+ T
Sbjct: 177 RRIHVSIGLLGIAVLAAATLAPSLTRTKSTTIVGAKTFTEQYVLAALISHRLQAADLPAT 236
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS---------------IKL 102
+ L V F +L N ID+++ Y + I L
Sbjct: 237 TREGLGSNVIFDALANDDIDVYVDYSGTLWANQFHMPELKPRQELLSELKATLARRNITL 296
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
+ E Y L + I+ G + +
Sbjct: 297 LGELGFENAYALLMPKTRADA--LGIHSISDLAAHAGKMSIAGDYEFFARPEWTALKKAY 354
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
S + R +++ + + V + + + + L +
Sbjct: 355 GLSFRERRQMQSDF------MYAAVASGEVDVIAGYTSDGLIAKYGLTALDD--DRHAIP 406
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQD--RQFVGRTML 277
++ + + L+ + K +A+ E N D V R L
Sbjct: 407 SYDAIVLLAPQRANDA-KLRAALQPLLGKIDIAVMREANLRATGNGADSSPATVAR-WL 463
>gi|256392270|ref|YP_003113834.1| glycine/betaine ABC transporter substrate-binding protein
[Catenulispora acidiphila DSM 44928]
gi|256358496|gb|ACU71993.1| Substrate-binding region of ABC-type glycine betaine transport
system [Catenulispora acidiphila DSM 44928]
Length = 302
Score = 87.2 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 32/273 (11%), Positives = 71/273 (26%), Gaps = 28/273 (10%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGIDIFMG 81
V + + + + L+ G K I+ + V ++ ++ + +
Sbjct: 35 KKGQVTVGSANFPENVLLADIYASALKAK-GVKVGIRFNVGSREVLYQQVQQGSLTVLPE 93
Query: 82 YWY--------------PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKS 127
Y + ++++ + K L V A +
Sbjct: 94 YNGALLAYLDSKTRAATTAEIDAQLRATLPAKLEILDPSPAEDKNALVVTAATAAKDHLT 153
Query: 128 YQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQ 187
I G E Q + + + + +
Sbjct: 154 AIGDLAPYAAAL-SIGGPPEFKERYQGLPGLKDKYGL--TFKSFASLDTAGPIT--VKAL 208
Query: 188 RNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKN 247
++ V + P N L +++ +V + P + L
Sbjct: 209 ADDSVQVATLFTTDPNIVSHNFKVLTDPQQVFT--AQNVTPLAYR--ASMTPTATATLNE 264
Query: 248 I--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
+ K + A MM I+N K+D V L+
Sbjct: 265 VSAKLNTAALVGMMAQIMNQKRDIDVVADNWLK 297
>gi|296282190|ref|ZP_06860188.1| ABC transporter permease protein [Citromicrobium bathyomarinum
JL354]
Length = 516
Score = 87.2 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/306 (8%), Positives = 74/306 (24%), Gaps = 40/306 (13%)
Query: 2 YKILAVCLFLTTFSISYA-------RDADSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
++ ++ A D V +++ + LEE G
Sbjct: 218 RRLWLGGAMAVAIGVAAAFVSQVDWSRDDGRDTVVIGTKQFSEQLILGRLVGAQLEEA-G 276
Query: 55 YKTNIKLL-AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEE---------------- 97
Y + V +++ + ID++ Y +
Sbjct: 277 YNVEYREGLGSAVVAQAVADGSIDLYFDYTGTIWANQMKRTDNPGRDAMYEAIRKWEREV 336
Query: 98 GSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILD 157
+++ + Y A+ + + I + + G +P
Sbjct: 337 QGTRVLGKLGFENAYAFAMREDRA--NELGIRTIEDLARAGPQLVAGGDPEWFERPEWFA 394
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
+ + S + + R++ V ++ + + L E
Sbjct: 395 VRDAYGLKF------ANQRNFSPTFMYDALRSSEADVITAYTSDGRIAADKLRVLEDPRE 448
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI-KFSVALENEMMKLILN---NKQDRQFVG 273
++ + + ++ L + +V E + K+ +
Sbjct: 449 AL--PSYDTLIILSPERANDERLLAALRPLLGTINVEAMREANFSVDRTDGEKKTPREAA 506
Query: 274 RTMLRT 279
L
Sbjct: 507 S-WLAK 511
>gi|239939512|ref|ZP_04691449.1| ABC transporter substrate-binding protein [Streptomyces roseosporus
NRRL 15998]
gi|239986001|ref|ZP_04706665.1| ABC transporter substrate-binding protein [Streptomyces roseosporus
NRRL 11379]
gi|291442942|ref|ZP_06582332.1| ABC transporter substrate-binding protein [Streptomyces roseosporus
NRRL 15998]
gi|291345889|gb|EFE72793.1| ABC transporter substrate-binding protein [Streptomyces roseosporus
NRRL 15998]
Length = 325
Score = 86.8 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 30/271 (11%), Positives = 68/271 (25%), Gaps = 28/271 (10%)
Query: 28 VRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGIDIFMGYWYP 85
V +T+ E G KT ++ + +LK ID+ Y
Sbjct: 61 VTIGTANFTESQVLGY-LYAAALEAAGVKTTVRPNLGTREILIPALKGGDIDLLPEYQGA 119
Query: 86 SLEKFIAPYLE--------------EGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDI 131
L ++++ AV + +
Sbjct: 120 LLHYLDTKATATEEGTMQNALAMLLPRGLQILPYGEAENADAFAVTRETADEY--GLKSL 177
Query: 132 AKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI 191
A K G I G P + + + ++ ++ +
Sbjct: 178 ADLAKHNGKLIIGAAPEVKKRTVGSVGLKE-VYGVEFKEFKSLDSSGPL--VKGALKKGD 234
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--K 249
V + + L + + V ++ D + + L +
Sbjct: 235 VDVANLFTTDTDIAAEGWVVLTDPKNL--IPGQHVVPLIADRKADST--VRKALARLGSV 290
Query: 250 FSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ E+ +L+ +++D + V H
Sbjct: 291 LTTKDLTELNRLVDKDRKDPEDVAYDWAAEH 321
>gi|325284193|ref|YP_004256734.1| ABC-type glycine betaine transport, periplasmic subunit
[Deinococcus proteolyticus MRP]
gi|324316002|gb|ADY27117.1| ABC-type glycine betaine transport, periplasmic subunit
[Deinococcus proteolyticus MRP]
Length = 347
Score = 86.4 bits (212), Expect = 5e-15, Method: Composition-based stats.
Identities = 38/285 (13%), Positives = 76/285 (26%), Gaps = 31/285 (10%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGIDIFM 80
V T+ A +T + L + G+ A V ++L+ ID++
Sbjct: 65 GQTGTVTVGSKIDTEGALLCQVTKLSLIDA-GFTVNDKCSTGATNVVRKALEQGEIDLYP 123
Query: 81 GYWYPSLE---------------------KFIAPYLEEGSIKLVAENLQGAKYMLAVND- 118
Y ++ + E I + + +AV
Sbjct: 124 EYTGSAIYILNEAGAGIDEAVSRDAQQAYDTVKRLDAENGIVWLDRAPANNTWAVAVPQG 183
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ G+++ D ++ G L +
Sbjct: 184 LAEENGLETMADFGRWVSGGGKVKLAASQEFVDRPDALKAFEATYGFSLTPDQLVIVPGG 243
Query: 179 SFSQIRRDQRNNI--PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
+ +Q +++ S L + L E VR + LD
Sbjct: 244 NTTQTETAAAQGTSGVNAAMAYGTDGAISALGLKALTDPEGA--VAVYQPALTVREETLD 301
Query: 237 KCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
K P I+ ++ + + E+ I N +D V + L
Sbjct: 302 KFPQIADVMNPVFARLDETTLAELNGRIAVNGEDAAKVAQDWLSQ 346
>gi|255522554|ref|ZP_05389791.1| glycine betaine/carnitine/choline ABC transporter
(osmoprotectant-binding protein) [Listeria monocytogenes
FSL J1-175]
Length = 175
Score = 86.4 bits (212), Expect = 5e-15, Method: Composition-based stats.
Identities = 18/173 (10%), Positives = 49/173 (28%), Gaps = 10/173 (5%)
Query: 110 AKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
Y+ V + ++ +K G++ + + + ++
Sbjct: 4 NTYVFMVRQDTAKKY--NLNTVSDMRKVENELTAGVDNSWMEREGDGYKAFSKAYDIEFK 61
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV 229
++ I +NN V L + N+ L ++ +
Sbjct: 62 KIFP----MQIGLIYTALKNNQMDVALGYSTDGRIPTYNLKLLKDDKKFF--PPYDASAL 115
Query: 230 VRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ L K P + + +K S ++ ++ V + L+ +
Sbjct: 116 ATDEILKKHPELKTTINKLKGKISTEEMQKLNYEADGKLKEPSIVAQEFLQKN 168
>gi|319792587|ref|YP_004154227.1| substrate-binding region of ABC-type glycine betaine transport
system [Variovorax paradoxus EPS]
gi|315595050|gb|ADU36116.1| Substrate-binding region of ABC-type glycine betaine transport
system [Variovorax paradoxus EPS]
Length = 518
Score = 86.4 bits (212), Expect = 5e-15, Method: Composition-based stats.
Identities = 23/292 (7%), Positives = 61/292 (20%), Gaps = 24/292 (8%)
Query: 2 YKILAVCLFLTTFSISYARDAD--SCTPVRFADTGWTDIAATTAMTSVILEEILGYK--T 57
++ L + ++ + +R +T+ + +
Sbjct: 6 RRLWRAALLFSMAWMAAVSGPAQAADEALRVGSKRFTESYILAELLAQTAAPHTASPPVV 65
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA---------ENLQ 108
L + + +L++ ID++ Y + + + + A
Sbjct: 66 RQGLGNTAIVYEALRSGAIDLYAEYTGTIALEILKGSPADTREAMNAALAPMGLGVAIPL 125
Query: 109 GAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
G A+ + ++ K K+ + F+
Sbjct: 126 GFNDGYALAVRAADAERLGLRTLSDLAKHPELKLGLSNEFLGRADGWKGLAARYGFTQTP 185
Query: 169 FRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYT 228
L + L + L
Sbjct: 186 TGLDHG-------LAYEAVAAKQIDAIDIYTTDAKIDHLGLRVLEDDRRYF--PRYDAVV 236
Query: 229 VVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
+ + D + P L+ + K M + R +
Sbjct: 237 LYKLDLPTRLPKAWAALQTLEGKVDEHAMIAMNARAELQSVPFDVIARDFIA 288
>gi|153005912|ref|YP_001380237.1| glycine betaine ABC transporter substrate-binding protein
[Anaeromyxobacter sp. Fw109-5]
gi|152029485|gb|ABS27253.1| Substrate-binding region of ABC-type glycine betaine transport
system [Anaeromyxobacter sp. Fw109-5]
Length = 496
Score = 86.4 bits (212), Expect = 5e-15, Method: Composition-based stats.
Identities = 25/260 (9%), Positives = 66/260 (25%), Gaps = 11/260 (4%)
Query: 28 VRFADTGWTDIAATTAMTSVIL-EEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPS 86
V + + + + + E + + L V + +L +D++ Y
Sbjct: 19 VTVGSKQFGESLVLGELAAQLAREAGVESRHRAALGGTRVVWEALVRGEVDLYPEYTGTI 78
Query: 87 LEKFIAPYLEEGSIKLVAENLQ----GAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKI 142
+ + + + + L G L + +ALG+ + + +
Sbjct: 79 ARELLGGAVAADDVPALQAALAARGVGMTGGLGF-EDTYALGMLRSRAAELGVSRVSDLL 137
Query: 143 YGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPH 201
+ +D + +RL + ++ V +
Sbjct: 138 SHPQLRLGFTNEFMDRGDGWPALRARYRLPQRDVRGLEHEVAYAALAAGELDVTDLYSTD 197
Query: 202 PINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMM 259
P ++ L + R + + P ++ + + M
Sbjct: 198 PEIRRHDLIVLEDDRRAF--PPYEAVFLHRLELARRAPQALASIRRLEGRIDAGAMIAMN 255
Query: 260 KLILNNKQDRQFVGRTMLRT 279
+ V LR
Sbjct: 256 SRAELDGVAPSRVASEFLRD 275
>gi|197123695|ref|YP_002135646.1| substrate-binding region of ABC-type glycine betaine transporter
[Anaeromyxobacter sp. K]
gi|196173544|gb|ACG74517.1| Substrate-binding region of ABC-type glycine betaine transport
system [Anaeromyxobacter sp. K]
Length = 490
Score = 86.0 bits (211), Expect = 6e-15, Method: Composition-based stats.
Identities = 26/266 (9%), Positives = 60/266 (22%), Gaps = 24/266 (9%)
Query: 28 VRFADTGWTDIAATTAMTSVILEEILGYKTNIK-LLAVPVTFRSLKNKGIDIFMGYWYP- 85
V+ +T+ + + + + L V + +L ID++ Y
Sbjct: 17 VQIGSKAFTESVVLGEIVARTAASSGAAAVHRRALGGTRVVWEALTRGEIDVYPEYTGTL 76
Query: 86 ----------SLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK 135
+ + L I + A Y L + + I+
Sbjct: 77 VREILAGEPIGDDASLRRALAARGIGVAAVLGFENTYALGMRRAAAER--LGIRAISDLL 134
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
+ G + + + S + R V
Sbjct: 135 RHPGLRFGFTNEFVDRADGWPALRARYGLSA------SSVRGLDHDLAYRALAEGALDVV 188
Query: 196 LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVA 253
+ + L++ L + R D + P ++ + +
Sbjct: 189 DLYSTDAQIAQLDLTVLDDDRRAF--PRYDAVILQRLDLDARAPAAVAAIRRLAGTITAR 246
Query: 254 LENEMMKLILNNKQDRQFVGRTMLRT 279
M + D V +
Sbjct: 247 EMTAMNARVQLEHADPGEVAAEFVAE 272
>gi|315605332|ref|ZP_07880375.1| ABC superfamily ATP binding cassette transporter, substrate-binding
protein [Actinomyces sp. oral taxon 180 str. F0310]
gi|315312901|gb|EFU60975.1| ABC superfamily ATP binding cassette transporter, substrate-binding
protein [Actinomyces sp. oral taxon 180 str. F0310]
Length = 299
Score = 86.0 bits (211), Expect = 6e-15, Method: Composition-based stats.
Identities = 32/270 (11%), Positives = 70/270 (25%), Gaps = 18/270 (6%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--LLAVPVTFRSLKNKGID 77
+ T + + + + LE G+ + + V L ID
Sbjct: 29 GGSPDSTTIVVGSQDYYSNEILAEVYAQALEGA-GFTVERQLRIGQREVYMPELSAGSID 87
Query: 78 IFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKE 137
+F Y L+ S + + L D A SY + E
Sbjct: 88 VFPEYTGNLLQYLQPDAQARTSEDVYRDLSAALPSGLRALDQAAATDQDSYVVTTAFASE 147
Query: 138 LGAKIYGIEPGN-----EGNQRILDMINNNKFSLKGFRLIEASELASFS---QIRRDQRN 189
G G GN + + + + + S + +
Sbjct: 148 HSVASIGDLAGVTPLVLGGNSELQTRPYGPTGLQQTYGVTVSFTPIEDSGGPLTVKALTD 207
Query: 190 NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
+ + P ++ ++ L + + V + S + +L ++
Sbjct: 208 GTIQLANIYSSDPSLANGDLTVLADPAGLFL--SSHVVPLASSRVSA---EAASVLNSVS 262
Query: 250 --FSVALENEMMKLILNNKQDRQFVGRTML 277
+ EM + ++ + R L
Sbjct: 263 AALDASDLIEMNRASTQEQKSASQIARDWL 292
>gi|307305451|ref|ZP_07585199.1| Substrate-binding region of ABC-type glycine betaine transport
system [Shewanella baltica BA175]
gi|306911754|gb|EFN42179.1| Substrate-binding region of ABC-type glycine betaine transport
system [Shewanella baltica BA175]
Length = 187
Score = 86.0 bits (211), Expect = 7e-15, Method: Composition-based stats.
Identities = 21/180 (11%), Positives = 48/180 (26%), Gaps = 34/180 (18%)
Query: 142 IYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPH 201
+ PG + I ++ ++A+ A + +N P F +W P+
Sbjct: 1 MTACPPGWGCEKIITHHMDVYGLKDS-INPVKAAYAAGMASAMAGYKNGGPIFFYTWAPN 59
Query: 202 PINSDLNIHYLPGGEE------------------------------ISGFGEASVYTVVR 231
+ GF + + V
Sbjct: 60 WTIFKMKPGKDVVWINVPEIKPTKAQSAAVDRMTVKGLEGAVSDPIKLGFVASDIQIVAN 119
Query: 232 SDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV---GRTMLRTHPDLLKNWL 288
+ + P + + +A NE + + ++ +Q + + + D WL
Sbjct: 120 KKFAKQNPAARKFFEVFTLPLADINEQNTRMNDGEKSKQDIQHHVDGWIAKNQDKWNGWL 179
>gi|226361731|ref|YP_002779509.1| ABC transporter substrate-binding protein [Rhodococcus opacus B4]
gi|226240216|dbj|BAH50564.1| putative ABC transporter substrate-binding protein [Rhodococcus
opacus B4]
Length = 303
Score = 85.7 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 33/309 (10%), Positives = 82/309 (26%), Gaps = 41/309 (13%)
Query: 1 MYKILAVCLFLTTFSISYARD------------ADSCTPVRFADTGWTDIAATTAMTSVI 48
M K L V L T A S + + + + +
Sbjct: 1 MMKALIVALAGATLVSLTACGIGKDPLAADGGGGSSEGAIVVGSADFPESQLIATIYAEA 60
Query: 49 LEEILGYKT--NIKLLAVPVTFRSLKNKGIDIFMGYWY--------------PSLEKFIA 92
L G + + + V ++++ ID+ Y
Sbjct: 61 LRAN-GIDVTEKLNIGSREVYVPAIRDGSIDLLPEYSGALLQYLDSATTATASDEVTEEI 119
Query: 93 PYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGN 152
+ + + K +LAV S + I G G P +
Sbjct: 120 KAKLPAGLIALEPSPAEDKDVLAVRQETADEY--SLETIEDLVPHAGELTLGGPPEWKTR 177
Query: 153 QRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYL 212
+ + + +++ L + + + V + P N+ L
Sbjct: 178 ENGVAGLK-DRYGLTFKEFLALDAGGPLTL--NALLSGQIEVADVFSTDPAMRSENLVAL 234
Query: 213 PGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQ 270
+ + ++ ++ + ++ +L ++ + M + + + +D
Sbjct: 235 EDTKHLFL--AENITPIINENKAGD--DVRAVLADVSAALTTEDLIAMNERVA-DLEDMG 289
Query: 271 FVGRTMLRT 279
+ R L+
Sbjct: 290 DIAREWLQD 298
>gi|167645341|ref|YP_001683004.1| substrate-binding region of ABC-type glycine betaine transporte
[Caulobacter sp. K31]
gi|167347771|gb|ABZ70506.1| Substrate-binding region of ABC-type glycine betaine transport
system [Caulobacter sp. K31]
Length = 515
Score = 85.7 bits (210), Expect = 7e-15, Method: Composition-based stats.
Identities = 31/301 (10%), Positives = 73/301 (24%), Gaps = 39/301 (12%)
Query: 2 YKILAVCLFLTTFSISYARD------ADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
+I L ++ A A + +++ + + LE G
Sbjct: 220 RRIWGAGLLGLAVGLAVAVAPLAANLAPGPSSYVIGAKNFSEQYILAELMADRLE-GQGA 278
Query: 56 KTNIKLL-AVPVTFRSLKNKGIDIFMGYWYPSLEKFI----------------APYLEEG 98
+ K+ V +R+L ID ++ Y + A
Sbjct: 279 RVTRKINLGSAVAYRALAAGEIDAYVDYSGTLWANVLGRKDNPGRAAVLDGLRAELRRRD 338
Query: 99 SIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ L+A Y LA+ + +A + G + +
Sbjct: 339 GVVLLAPLGFENAYALAMRRDRAEA--LGIRTLADLAAKAPNLTLGGDLEFFSRPEWASV 396
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
K R + + + R + V ++ + ++ L +
Sbjct: 397 EATYGLRFKTKRQFQPTF------MYRALGSGEADVISAFSSDGRIAADDLVVLGDPKGA 450
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLI--LNNKQDRQFVGR 274
++ + + L + V + +K+ R
Sbjct: 451 L--PPYDAVLLIAPGRAEDR-RLRAALAGLDGAIGVEAMRAANYSVDRDQDKRSPAEAAR 507
Query: 275 T 275
Sbjct: 508 A 508
>gi|296118391|ref|ZP_06836971.1| glycine betaine/choline-binding protein of an ABC-type transport
system [Corynebacterium ammoniagenes DSM 20306]
gi|295968669|gb|EFG81914.1| glycine betaine/choline-binding protein of an ABC-type transport
system [Corynebacterium ammoniagenes DSM 20306]
Length = 310
Score = 85.7 bits (210), Expect = 8e-15, Method: Composition-based stats.
Identities = 32/275 (11%), Positives = 77/275 (28%), Gaps = 25/275 (9%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGIDI 78
S + + + LE GY+ + + ++ ID+
Sbjct: 41 SQASEEAIVIGSQDYYSNEIIAEAYAQALENA-GYEVDRQFRIGQREAYLPEIEAGDIDL 99
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL 138
F Y P L+ + + AE + A L V + A SY ++ E
Sbjct: 100 FPEYSGPVLQYWEPDTEARLPDDVYAELEEAAPDGLNVLEQSPATDQDSYVVTQEFADEW 159
Query: 139 GAKIY------------GIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRD 186
+ G E + + GF IE S +
Sbjct: 160 DLETVEDLDKVTEPLTLGANSEAESRPNGPEGLAETYGIEVGFSPIEDSGGPLT---VKA 216
Query: 187 QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLK 246
++ + + + P ++ L + + ++V + + ++++
Sbjct: 217 LQDGDVQMAIIYTADPSIEANDLVSLEDTKGLFL--SSNVVPLASDKVDE---EAAQIIN 271
Query: 247 NIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++ S + + ++ + + L
Sbjct: 272 DVSAAMSPDDLISLNNRSVTDQLPAAEIAKDWLEE 306
>gi|220932678|ref|YP_002509586.1| Substrate-binding region of ABC-type glycine betaine transport
system [Halothermothrix orenii H 168]
gi|219993988|gb|ACL70591.1| Substrate-binding region of ABC-type glycine betaine transport
system [Halothermothrix orenii H 168]
Length = 316
Score = 85.7 bits (210), Expect = 8e-15, Method: Composition-based stats.
Identities = 17/135 (12%), Positives = 42/135 (31%), Gaps = 8/135 (5%)
Query: 147 PGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSD 206
+ I + F L RNN V + + +
Sbjct: 41 EFLNRDDGIPGLEKAYGFKFDRDAL----TTMKTGLTYDALRNNKLDVAMGFATDGRIAA 96
Query: 207 LNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILN 264
++ L + + F + +R + LD+ P ++ ++ + + K +
Sbjct: 97 FDLVSLED--DKNYFPVYNPAPTIRKEILDEYPELADVINKLPPVLDQKTLTNLNKEVDV 154
Query: 265 NKQDRQFVGRTMLRT 279
+ +D + V + L+
Sbjct: 155 DGKDPEEVAQKFLKE 169
Score = 44.8 bits (104), Expect = 0.017, Method: Composition-based stats.
Identities = 19/136 (13%), Positives = 40/136 (29%), Gaps = 6/136 (4%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPVTFRSLKNKGIDIFMG 81
+ A +T+ M +L+ GY L P ++L++ ID
Sbjct: 181 QGPAITVASKIFTEQLILGHMLIDLLKAH-GYPVEDRTSLGGTPALRKALESGQIDACWE 239
Query: 82 YWYPSLEKFIAPYL---EEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL 138
Y L + + + + V + A ++ ++ K +K
Sbjct: 240 YTGTVLMTVMKEDEITQSDEAYQKVKKWDAEANNIIWLDYAPANNTYTLLMTRKKAEKLG 299
Query: 139 GAKIYGIEPGNEGNQR 154
I + G +
Sbjct: 300 IKTISDLASYINGEEN 315
>gi|239978546|ref|ZP_04701070.1| putative glycine betaine ABC transporter substrate-binding and
permease component [Streptomyces albus J1074]
gi|291450442|ref|ZP_06589832.1| glycine betaine transport system permease [Streptomyces albus
J1074]
gi|291353391|gb|EFE80293.1| glycine betaine transport system permease [Streptomyces albus
J1074]
Length = 457
Score = 85.7 bits (210), Expect = 8e-15, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 56/157 (35%), Gaps = 13/157 (8%)
Query: 1 MYKILAVCLFLTTFSISYARDADS---------CTPVRFADTGWTDIAATTAMTSVILEE 51
M ++ + L + D ++ + W + A+T + +LE+
Sbjct: 305 MVGVVVLALIAGGMGALGSSDNEAQADSGNVGQGREINIGYIPWDEGIASTYLWKEMLEQ 364
Query: 52 ILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAK 111
G+K N + + + N ID W P+ + + ++ +
Sbjct: 365 R-GFKVNAQQYEAGALYTGMANGEIDFETDSWLPTTHESYWKKYGD-KLEDMGSWYGPTS 422
Query: 112 YMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPG 148
+AV GI+S +D+ + +I GIEPG
Sbjct: 423 LEIAVPSY--MKGIESMEDLKGQADKFKGRIVGIEPG 457
>gi|323359398|ref|YP_004225794.1| periplasmic glycine betaine/choline-binding (lipo)protein of an ABC
transporter [Microbacterium testaceum StLB037]
gi|323275769|dbj|BAJ75914.1| periplasmic glycine betaine/choline-binding (lipo)protein of an
ABC-type transport system [Microbacterium testaceum
StLB037]
Length = 305
Score = 85.7 bits (210), Expect = 8e-15, Method: Composition-based stats.
Identities = 30/294 (10%), Positives = 72/294 (24%), Gaps = 23/294 (7%)
Query: 4 ILAVCLFLTTFSISYAR--------DADSCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
+ L L + + S + + + + LE G
Sbjct: 16 LAVASLALAGCGGGSSDPLSNGGGDASASSDTIVVGSQAYYSNEIIAEIYAQALEGA-GK 74
Query: 56 KTNIKL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
+ L++ + +F Y L+ F A S +
Sbjct: 75 TVTRQFQIGQRDAYIPLLEDGTVSVFPEYTGNLLQFFEADTTARSSDDVYKALPAALPEG 134
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYG--IEPGNEGNQRILDMINNNKFSLKGFRL 171
L V D A S + G + + + + + KG +
Sbjct: 135 LEVLDQSPATDQDSITVTKAFADANGLTSIADLAKVTSGLTLGGNSELADRPYGPKGLQS 194
Query: 172 IEASELASFSQIRRDQRN---NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYT 228
+ + + V + P N+ L +++
Sbjct: 195 TYGVSVQFSATGETTVDDLIAGTIQVANVYTADPRVKTDNLVNLTDPKDLFLASNVVPVV 254
Query: 229 VVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ ++S +L + K + +M +++ + + L +
Sbjct: 255 N-----ANVASDVSDVLNKVSAKLTTEGLIQMNVESTVDQKSSADIAKEWLSAN 303
>gi|192290642|ref|YP_001991247.1| glycine/betaine ABC transporter substrate-binding protein
[Rhodopseudomonas palustris TIE-1]
gi|192284391|gb|ACF00772.1| Substrate-binding region of ABC-type glycine betaine transport
system [Rhodopseudomonas palustris TIE-1]
Length = 515
Score = 85.7 bits (210), Expect = 9e-15, Method: Composition-based stats.
Identities = 27/288 (9%), Positives = 66/288 (22%), Gaps = 29/288 (10%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
L + A + T +T+ A+ LE T L
Sbjct: 232 LGTAGIAAIVIATLLPGATTRTSYVIGAKTFTEQYVLAALLQQRLESSGLAATTRAGLGS 291
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLE---------------KFIAPYLEEGSIKLVAENLQG 109
V + +L++ ID ++ Y + L + + L+ E
Sbjct: 292 SVIYEALRSGDIDAYVDYSGTLWASQFKHSGIATRDQVLADLKQDLAKDGVTLLGELGFA 351
Query: 110 AKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
Y L + + I + + ++ + + K
Sbjct: 352 NAYALVMPRGKAEA--LKIRSIDDLATRAPSMTIAGDYEFFSRPEWANLRSAYGLAFKTE 409
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV 229
R ++ + + + + + ++ L +
Sbjct: 410 RQMQPDF------MYAAVAAGEVDLIAGYTSDGLIAKYDLVVLDDP--KQTIPPYDAVLL 461
Query: 230 VRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
+ + L + + + E + V R
Sbjct: 462 LAPKRASDS-KLRTALNPLLGRIDIEAMREANLQ-AGSGGTPDAVARA 507
>gi|326799969|ref|YP_004317788.1| glycine/betaine ABC transporter periplasmic protein
[Sphingobacterium sp. 21]
gi|326550733|gb|ADZ79118.1| ABC-type glycine betaine transport, periplasmic subunit
[Sphingobacterium sp. 21]
Length = 523
Score = 85.3 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 18/146 (12%), Positives = 49/146 (33%), Gaps = 4/146 (2%)
Query: 137 ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFL 196
YG + + + N + + L + + + + + + V
Sbjct: 231 YFVPAAYGTKLVAGFTPEFMGRQDGNVGLERIYGLKIHTVVINDAVMYKAAYEKQLDVIS 290
Query: 197 SWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVAL 254
+ ++ L + I +VR+ L+K P++ + L + K + ++
Sbjct: 291 GYSTDGRLKAYDLVVLKDDKGIF--PPYYAAPIVRNQALEKFPSLEKTLNLLVGKINDSV 348
Query: 255 ENEMMKLILNNKQDRQFVGRTMLRTH 280
++ + + Q + V L+ H
Sbjct: 349 MTDLNYRVDHLHQSPERVAHDFLKAH 374
Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/129 (11%), Positives = 37/129 (28%), Gaps = 10/129 (7%)
Query: 26 TPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGIDIFMGYW 83
VR + + ++ S +++ Y L + F +L N ID++ Y
Sbjct: 386 GTVRLGSKIFGEQYILASLYSQLIKGFTDYDVVAKTGLGGTKICFDALVNDQIDLYPEYT 445
Query: 84 YPSLEKFIAPYLE--------EGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK 135
L + P + + ++ KY ++ + +
Sbjct: 446 GTGLLAILKPPQQTIDSLGGDKDKTFAYVKDQFEKKYGISWLKPIGFNNAYALMMRKQQA 505
Query: 136 KELGAKIYG 144
+ +
Sbjct: 506 ETFHIETIS 514
>gi|296115268|ref|ZP_06833908.1| putative ABC-type proline/glycine betaine transport protein
[Gluconacetobacter hansenii ATCC 23769]
gi|295978171|gb|EFG84909.1| putative ABC-type proline/glycine betaine transport protein
[Gluconacetobacter hansenii ATCC 23769]
Length = 253
Score = 85.3 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/251 (11%), Positives = 75/251 (29%), Gaps = 9/251 (3%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPS 86
V T AT A + +LE + ++N ID+F+ W P
Sbjct: 3 SVTLGHLDETLHEATAAAVARVLEA-YELEIEYVPATHEALMAHMRNGDIDLFVSAWLPD 61
Query: 87 LEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE 146
++ ++ + + + A+G+ S ++A ++ +I +
Sbjct: 62 VDAAYLD--PALGMEPLGDLYR--PEFGWYLPTAAAMGLTSIAELAADGHDVNREIVAAQ 117
Query: 147 PGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSD 206
R+ + + GF + + + + + PAV W+P+ ++
Sbjct: 118 S---VLDRVRQGVAAYNLTEHGFTIAARPDAEAMQYADQAIKAGEPAVIALWQPNFLHYG 174
Query: 207 LNIHYLPGGEEISGFGEASVYTVVRSDY-LDKCPNISRLLKNIKFSVALENEMMKLILNN 265
+ + + +VR D ++ L + + + + +
Sbjct: 175 STSLTPLLDPKGALGTAQTARMLVRRAVRADLDSDMLDELDELTLGNKVVSALDHAMRVE 234
Query: 266 KQDRQFVGRTM 276
Sbjct: 235 DMSADAAAEAW 245
>gi|149278703|ref|ZP_01884839.1| hypothetical protein PBAL39_23777 [Pedobacter sp. BAL39]
gi|149230698|gb|EDM36081.1| hypothetical protein PBAL39_23777 [Pedobacter sp. BAL39]
Length = 534
Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 15/138 (10%), Positives = 40/138 (28%), Gaps = 11/138 (7%)
Query: 146 EPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINS 205
+ + + + + S + + + V +
Sbjct: 258 PEFMGRQDGDIGLRDTYGLKIHTTVI-------SDAVMYKAAYAKELDVISGYSTDGRLK 310
Query: 206 DLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLIL 263
++ L + S F +VR+ + K P + ++L + K ++ ++
Sbjct: 311 AFDLKILED--DKSIFPPYYAAPIVRTSAMKKFPELEKVLNMLAGKIPDSIMTDLNYKTD 368
Query: 264 NNKQDRQFVGRTMLRTHP 281
Q + V + L H
Sbjct: 369 YLHQTPEKVAKDFLAAHQ 386
Score = 53.3 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/140 (15%), Positives = 41/140 (29%), Gaps = 25/140 (17%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGIDIFM 80
VR + + AM S++++ Y L + F +L N ID++
Sbjct: 394 GKQGTVRIGSKIFGEQYILAAMYSMLIKGYTDYDVATKTGLGGTKICFDALVNDQIDLYP 453
Query: 81 GYWYPSLEKFIAPYL----------------------EEGSIKLVAENLQGAKYMLAVND 118
Y L + P ++ I+ + Y L +
Sbjct: 454 EYTGTGLLVLLQPAPQLAKKLAANKEDTYQYVKQAFLQKFDIQWLQPIGFNNSYALMMRK 513
Query: 119 VG-FALGIKSYQDIAKYKKE 137
L + + D+ Y +
Sbjct: 514 KQSAELNVNTITDLKNYLDK 533
>gi|220913299|ref|YP_002488608.1| substrate-binding region of ABC-type glycine betaine transporter
[Arthrobacter chlorophenolicus A6]
gi|219860177|gb|ACL40519.1| Substrate-binding region of ABC-type glycine betaine transport
system [Arthrobacter chlorophenolicus A6]
Length = 320
Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 31/284 (10%), Positives = 80/284 (28%), Gaps = 20/284 (7%)
Query: 11 LTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTF 68
L+ S A + T + + + + + L G K + V F
Sbjct: 37 LSNAPSSNAGSSGGATSLTVGSADFPESQIIAELYAGALNAA-GVTATTKPNIGSREVYF 95
Query: 69 RSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSY 128
+++++ +D+ Y L + + + LAV + A +
Sbjct: 96 KAVQDGSVDVVPDYTGNLLLYVDKEATQVSADDIYKALPDKLADGLAVAEASKAEDKDAM 155
Query: 129 QDIAKYKKE-----------LGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
++ + ++I P + ++ + +L S+
Sbjct: 156 VVTKATAEKYQLKSIEDLAKVCSEIVVGAPATFAERAYGLPGLKKNYNCEPKKLEPFSDG 215
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVR-SDYLD 236
+ + + V + P +D ++ L + V + + D
Sbjct: 216 GGPVTL-KALLEDQVQVADIYTTTPSIADNDLVVLEDPKNNFI--AQQVVPLYNEKNMTD 272
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILN-NKQDRQFVGRTMLRT 279
K + I + + + + KQ+ + L+
Sbjct: 273 KAKEALNSVSRI-LTTDDLINLNRAVSGSQKQNAKDAAAAWLKD 315
>gi|325964040|ref|YP_004241946.1| periplasmic glycine betaine/choline-binding (lipo)protein of an
ABC-type transporter (osmoprotectant binding protein)
[Arthrobacter phenanthrenivorans Sphe3]
gi|323470127|gb|ADX73812.1| periplasmic glycine betaine/choline-binding (lipo)protein of an
ABC-type transport system (osmoprotectant binding
protein) [Arthrobacter phenanthrenivorans Sphe3]
Length = 320
Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 35/287 (12%), Positives = 85/287 (29%), Gaps = 26/287 (9%)
Query: 11 LTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEE-ILGYKTNIKLLAVPVTFR 69
L+ + + T + + + + + L + T + + V F+
Sbjct: 37 LSEAPATSGPASGEATSLVVGSADFPESQIVAELYAGALNASGVTATTKPNIGSREVYFK 96
Query: 70 SLKNKGIDIFMGYWYPSLEKFIAPYLEE--------------GSIKLVAENLQGAKYMLA 115
++++ +D+ Y L EE + ++ + K +
Sbjct: 97 AVQDGSVDVVPDYTGNLLLHVDKAATEESAEDIAKALPEKLPDGLAVLEPSKAENKDAMV 156
Query: 116 VNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
V +KS +D+AK E + G L + N ++ + +L
Sbjct: 157 VTKATAEKYQLKSIEDLAKVCSE---IVVGAPATFAERAYGLPGLKEN-YNCEPRKLEPF 212
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVR-SD 233
S+ + + + V + P +D ++ L + V + +
Sbjct: 213 SDGGGPVTL-KALLEDQVQVADIYTTTPSIADNDLVVLEDPKNNFI--AQQVVPLYNEAK 269
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILN-NKQDRQFVGRTMLRT 279
DK + I + + + + KQ + L+
Sbjct: 270 MTDKAKEALNSVSRI-LTTEDLINLNRAVSGSQKQGAKEAADAWLKE 315
>gi|307319393|ref|ZP_07598821.1| Substrate-binding region of ABC-type glycine betaine transport
system [Sinorhizobium meliloti AK83]
gi|306895015|gb|EFN25773.1| Substrate-binding region of ABC-type glycine betaine transport
system [Sinorhizobium meliloti AK83]
Length = 305
Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 40/278 (14%), Positives = 84/278 (30%), Gaps = 28/278 (10%)
Query: 28 VRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPVTFRSLKNKGIDIFMGYWYP 85
V + T+ + +L KT ++L A PV +++ IDI+ Y
Sbjct: 27 VVVSSKIDTEGGVLGNIILSVLNAN-DIKTTDRVQLGATPVVRKAIIAGEIDIYPEYTGN 85
Query: 86 S------------------LEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG-IK 126
+ E+ + I + + + +A+ +K
Sbjct: 86 AAFFFEKANDPAWKDAAKAYEEAKKLDYDANKIVWLTPSPANNTWAIALRKDIAEKNNLK 145
Query: 127 SYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINN-NKFSLKGFRLIEASELASFSQIRR 185
+ D K+ G + + L F LK +LI S + + I
Sbjct: 146 TLSDFGKFVSGGGKVVLAASSEFVNSAAALPAFQTTYSFKLKPEQLITLSGGDTAATIAA 205
Query: 186 DQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
N + + + + L + + ++R L + P I +
Sbjct: 206 AANQTNGANAAMVYGTDGGIAPSGLVVLED--DKAVQPVYQPAPIIREAVLKENPAIEEI 263
Query: 245 LKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
LK + K + E+ + + + V L+ +
Sbjct: 264 LKPVFEKLDLTTLQELNGRVQVGGESAKAVAEDFLKAN 301
>gi|221199420|ref|ZP_03572464.1| ABC proline/glycine betaine family transporter, periplasmic ligand
binding protein [Burkholderia multivorans CGD2M]
gi|221205677|ref|ZP_03578692.1| ABC proline/glycine betaine family transporter, periplasmic ligand
binding protein [Burkholderia multivorans CGD2]
gi|221174515|gb|EEE06947.1| ABC proline/glycine betaine family transporter, periplasmic ligand
binding protein [Burkholderia multivorans CGD2]
gi|221180705|gb|EEE13108.1| ABC proline/glycine betaine family transporter, periplasmic ligand
binding protein [Burkholderia multivorans CGD2M]
Length = 253
Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 31/246 (12%), Positives = 72/246 (29%), Gaps = 5/246 (2%)
Query: 28 VRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSL 87
+ + A + + IL E G + FR L++ D+ W PS
Sbjct: 11 LTLVTIDLSFHRAASGVVRRILNEH-GVAVDEIFAPHEEAFRILRDGKADMLGSAWLPSS 69
Query: 88 EKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDI--AKYKKELGAKIYGI 145
E ++ + + + V D +++ D+ + +I GI
Sbjct: 70 HSVYL-APFEHDVEKITVLYR-PYALWGVPDYVPESAVRAIPDLKRPDVASRMVKRIQGI 127
Query: 146 EPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINS 205
PG ++ ++I G+ + + + V W P ++
Sbjct: 128 NPGAGISRFSREVIAQYGLEDAGYHFENGTLDDCVRAFEQAVNDRRWVVVPLWTPQYLHE 187
Query: 206 DLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNN 265
I L + + G + + ++ P L+ + + + ++
Sbjct: 188 QYTIRELDDPKGLLGGTDDATLIARKTSLHAIPPAALSELRELSLGNRETSRLDYVLSRT 247
Query: 266 KQDRQF 271
Sbjct: 248 GSMPSD 253
>gi|227819532|ref|YP_002823503.1| ABC transporter substrate-binding protein [Sinorhizobium fredii
NGR234]
gi|227338531|gb|ACP22750.1| putative solute-binding component of ABC transporter [Sinorhizobium
fredii NGR234]
Length = 305
Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 46/304 (15%), Positives = 91/304 (29%), Gaps = 28/304 (9%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--I 59
++ + + T + V + T+ + +L KT +
Sbjct: 1 MRLTLMKTCIGTALALALACGAAKADVVVSSKIDTEGGVLGNIILAVLNAN-DIKTTDRV 59
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IK 101
+L A PV +++ IDI+ Y + F I
Sbjct: 60 QLGATPVVRKAITAGEIDIYPEYTGNAAFFFEKADDPAWKDAAKGYELAKKLDYDANKIV 119
Query: 102 LVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN 160
+ + + +A+ +K+ D KY + G I + L
Sbjct: 120 WLTPSPANNTWAIALRKEVVEKNSLKTLSDFGKYVSDGGEVILAASSEFVNSAAALPAFQ 179
Query: 161 -NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
F+LK +LI S + + I N + + + + L +
Sbjct: 180 TAYAFTLKPEQLITLSGGDTAATIAAAANQTNGANAAMVYGTDGGIAPSGLVVLED--DK 237
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
S ++R L + PNI LLK + K + E+ + + + V
Sbjct: 238 SVQPVYQPTAIIREAVLKENPNIETLLKPVFEKLDLVTLQELNGRVQVGGEPAKTVAEDF 297
Query: 277 LRTH 280
L+ +
Sbjct: 298 LKKN 301
>gi|16264558|ref|NP_437350.1| putative choline uptake ABC transporter periplasmic solute-binding
protein precursor [Sinorhizobium meliloti 1021]
gi|15140696|emb|CAC49210.1| putative choline uptake ABC transporter periplasmic solute-binding
protein precursor [Sinorhizobium meliloti 1021]
Length = 305
Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 40/279 (14%), Positives = 82/279 (29%), Gaps = 28/279 (10%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPVTFRSLKNKGIDIFMGYWY 84
V + T+ + +L KT ++L A PV +++ IDI+ Y
Sbjct: 26 DVVVSSKIDTEGGVLGNIILSVLNAN-DIKTTDRVQLGATPVVRKAIIAGEIDIYPEYTG 84
Query: 85 PSLEKFIAPYLEEGS------------------IKLVAENLQGAKYMLAVNDVGFALG-I 125
+ F I + + + +A+ +
Sbjct: 85 NAAFFFEKADDPAWKDAAKAYDEAKKLDYDANKIVWLTPSPANNTWAIALRKDIAEKNNL 144
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINN-NKFSLKGFRLIEASELASFSQIR 184
K+ D K+ G + + L F LK +LI S + + I
Sbjct: 145 KTLSDFGKFVSGGGEVVLAASSEFVNSAAALPAFQTTYSFKLKPEQLITLSGGDTAATIA 204
Query: 185 RDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
N + + + + L + + ++R L + P I
Sbjct: 205 AAANQTNGANAAMVYGTDGGIAPSGLVVLED--DKAVQPVYQPAPIIREAVLKENPAIEE 262
Query: 244 LLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+LK + K + E+ + + + V L+ +
Sbjct: 263 ILKPVFEKLDLTTLQELNGRVQVGGESAKAVAEDFLKAN 301
>gi|313793027|gb|EFS41094.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL110PA1]
gi|313802524|gb|EFS43746.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL110PA2]
gi|314964443|gb|EFT08543.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL082PA1]
gi|315078544|gb|EFT50575.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL053PA2]
gi|327456980|gb|EGF03635.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL092PA1]
Length = 311
Score = 84.1 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/274 (9%), Positives = 73/274 (26%), Gaps = 18/274 (6%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEE-ILGYKTNIKLLAVPVTFRSLKNKGIDI 78
+ +T+ + + LE + K +++ A V ++L++ +++
Sbjct: 37 GSGSGSADLIVGSANFTESEIIAEVYAQSLETVGITIKRRMQIGARDVYVKALQDGSVNL 96
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSY---------- 128
Y L+ F ++A + ++V + A S+
Sbjct: 97 VPEYSGNLLQFFQGASSASDEKSVMASLRKAVPAGMSVGEPSAAQDADSWCVTTEFSHTH 156
Query: 129 --QDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRD 186
+ K+ G E + + S+ + + +
Sbjct: 157 KVTSLTDLATLDSLKVGGNPELKERPYGPKGLTKAYGVPSSIVKFTALSDSSGPLTV-KA 215
Query: 187 QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLK 246
+ + + P + ++ L +V ++ DK +
Sbjct: 216 LTSGTVDLVDLYTTTPAIKEQHLVVLSDPR--HLIVPQNVVPLLSKKVDDKARAQLARVS 273
Query: 247 NIKFSVALENEMMKLIL-NNKQDRQFVGRTMLRT 279
+ M + + K + + L
Sbjct: 274 K-TLTTDDLIGMNQRFQGDEKASAATIAKDWLAQ 306
>gi|163839894|ref|YP_001624299.1| glycine betaine-binding protein [Renibacterium salmoninarum ATCC
33209]
gi|162953370|gb|ABY22885.1| Glycine betaine-binding protein [Renibacterium salmoninarum ATCC
33209]
Length = 329
Score = 84.1 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 35/292 (11%), Positives = 82/292 (28%), Gaps = 41/292 (14%)
Query: 17 SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--LLAVPVTFRSLKNK 74
S + + + V + + + + LE G N K + + + ++L +
Sbjct: 45 SNSDKSGAAGTVTVGSADFPESQVIAQIYAGALEAA-GVTVNTKLGIGSREIYIKALDDG 103
Query: 75 GIDIFMGYWYP-----------------------SLEKFIAPYLEEGSIKLVAENLQGAK 111
I++ Y L F + + ++ K
Sbjct: 104 SINLIPDYTGNLLGYVDPQNTLTDKGDIVKALPDKLAAFADKQTNKTKLAILDAAAAEDK 163
Query: 112 YMLAVND-VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
+ V +KS +D+AK +L + G + + + F
Sbjct: 164 DAMVVTKATAAKYELKSIEDLAKVCDKL--TLAGPPEFETRPYGLPGLKDKYNCVPSKFT 221
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
I + + N+ V + P ++ L + V +
Sbjct: 222 PITGE-----ALTVKALINDDVQVADIFTTSPAIPTNSLTVLTDPKNNWL--AQQVVPLY 274
Query: 231 RSDYLDKCPNISRLLKNI--KFSVALENEMMKLIL-NNKQDRQFVGRTMLRT 279
L + L N+ + + + + + KQ+ + G+ L+
Sbjct: 275 AVGKLSDA--AKQALNNVSKQLTTDDLISLNGAVSGDKKQNPKDAGQQWLKD 324
>gi|307307595|ref|ZP_07587327.1| Substrate-binding region of ABC-type glycine betaine transport
system [Sinorhizobium meliloti BL225C]
gi|306901721|gb|EFN32322.1| Substrate-binding region of ABC-type glycine betaine transport
system [Sinorhizobium meliloti BL225C]
Length = 305
Score = 84.1 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 40/278 (14%), Positives = 84/278 (30%), Gaps = 28/278 (10%)
Query: 28 VRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPVTFRSLKNKGIDIFMGYWYP 85
V + T+ + +L KT ++L A PV +++ IDI+ Y
Sbjct: 27 VVVSSKIDTEGGVLGNIILSVLNAN-DIKTTDRVQLGATPVVRKAIIAGEIDIYPEYTGN 85
Query: 86 S------------------LEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG-IK 126
+ E+ + I + + + +A+ +K
Sbjct: 86 AAFFFEKANDPAWKDAAKAYEEAKKLDYDANKIVWLTPSPANNTWAIALRKDIAEKNNLK 145
Query: 127 SYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINN-NKFSLKGFRLIEASELASFSQIRR 185
+ D K+ G + + L F LK +LI S + + I
Sbjct: 146 TLSDFGKFVSGGGEVVLAASSEFVNSAAALPAFQTTYSFKLKPEQLITLSGGDTAATIAA 205
Query: 186 DQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
N + + + + L + + ++R L + P I +
Sbjct: 206 AANQTNGANAAMVYGTDGGIAPSGLVVLED--DKAVQPVYQPAPIIREAVLKENPTIEEI 263
Query: 245 LKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
LK + K + E+ + + + V L+ +
Sbjct: 264 LKPVFEKLDLTTLQELNGRVQVGGESAKAVAEDFLKAN 301
>gi|229493759|ref|ZP_04387541.1| ABC amino acid transporter, substrate binding component
[Rhodococcus erythropolis SK121]
gi|229319359|gb|EEN85198.1| ABC amino acid transporter, substrate binding component
[Rhodococcus erythropolis SK121]
Length = 312
Score = 84.1 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 29/293 (9%), Positives = 74/293 (25%), Gaps = 22/293 (7%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILE-EILGYKTNIKLL 62
+ LT S + +T+ + + L T+ +
Sbjct: 17 TVVSLTALTACGSSDGDSNSDPNAIVVGSANFTESETIANIYAEALRVNGFDVSTSFNVG 76
Query: 63 AVPVTFRSLKNKGIDIFMGYWYP------------SLEKFIAPYLEEGSIKLVAENLQGA 110
+ +LK+ I + Y S +A +L A
Sbjct: 77 SREAYIPALKDGSISVIPDYTGNLLQYLDPDSTATSSADVLAALPAALGSELAIATPASA 136
Query: 111 KYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFSLKGF 169
+ AV + + IA +G E + + +N +
Sbjct: 137 EDKDAVVVTKETADKWNLKTIADLAPHSAEVKFGAPAEFQERPAGLPGLKSNYGLDISAA 196
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV 229
+ ++ + + + + + + N L + +V V
Sbjct: 197 NFVPIADGGGPATV-KALSSGDITAANIFTTSASIPENNFVVLEDPKNNF--PAQNVVPV 253
Query: 230 VRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNN-KQDRQFVGRTMLRT 279
+R+ + +L + K + + + + K + + +
Sbjct: 254 LRASKSSD--KLKTVLDAVSAKLTTEELLALNVQVSGDTKTEPAAAAKAWVTA 304
>gi|254255334|ref|ZP_04948650.1| ABC-type proline/glycine betaine transport systems periplasmic
component [Burkholderia dolosa AUO158]
gi|124901071|gb|EAY71821.1| ABC-type proline/glycine betaine transport systems periplasmic
component [Burkholderia dolosa AUO158]
Length = 253
Score = 83.7 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 30/246 (12%), Positives = 73/246 (29%), Gaps = 5/246 (2%)
Query: 28 VRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSL 87
+ + A + + IL E G + FR L++ D+ W PS
Sbjct: 11 LTLVTIDLSFHRAASGVVRRILNEH-GVTVDEIFAPHEEAFRILRDGKADMLGSAWLPSS 69
Query: 88 EKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDI--AKYKKELGAKIYGI 145
E ++ + + + V D +++ D+ + +I GI
Sbjct: 70 HSVYL-APFEHDVEKITVLYR-PYTLWGVPDYVPESAVRAIPDLKRPDVASRMVKRIQGI 127
Query: 146 EPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINS 205
PG ++ +++ + G+ + + + V W P ++
Sbjct: 128 NPGAGISRFSREVVAQYGLADAGYHFENGTLDDCVRAFEQAVNDRRWVVVPLWTPQYLHE 187
Query: 206 DLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNN 265
I L + + G + + ++ P L+ + + + ++
Sbjct: 188 QYTIRELDDPKGLLGGTDDATLVARKTSLHAIPPAALSELRELSLGNRETSRLDYVLSRT 247
Query: 266 KQDRQF 271
Sbjct: 248 GSMPSD 253
>gi|295690692|ref|YP_003594385.1| glycine betaine ABC transporter substrate-binding protein
[Caulobacter segnis ATCC 21756]
gi|295432595|gb|ADG11767.1| Substrate-binding region of ABC-type glycine betaine transport
system [Caulobacter segnis ATCC 21756]
Length = 515
Score = 83.7 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 27/267 (10%), Positives = 60/267 (22%), Gaps = 33/267 (12%)
Query: 29 RFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRSLKNKGIDIFMGYWYPSL 87
+++ + + LE G L V +R+L ID ++ Y
Sbjct: 257 VIGAKNFSEQYILAELMAGRLERE-GASVQRRVNLGSAVAYRALAAGEIDAYVDYSGTLW 315
Query: 88 EKFIAPYLE----------------EGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDI 131
+ + L+A Y LA+ + +
Sbjct: 316 ANVLNRKDNPGRQAVLEGLRTELEARDGVVLLAPLGFENAYALAMRRDRAEA--LGIKSL 373
Query: 132 AKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI 191
A G + ++ K R + + + R +
Sbjct: 374 ADLAARAPDLTMGGDLEFFSRPEWAAVVTAYGLRFKAERQFQPTF------MYRALESRE 427
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--K 249
V ++ + ++ L +V + LK +
Sbjct: 428 ADVISAFSSDGRIAADDLVLLTDPRGAL--PPYDAVILVSPKRAGDR-RLIEALKPLGGS 484
Query: 250 FSVALENEMMKLILNN--KQDRQFVGR 274
V + + K+
Sbjct: 485 IDVRAMQAANYAVDRDAGKKSPAEAAA 511
>gi|226307615|ref|YP_002767575.1| ABC transporter substrate-binding protein [Rhodococcus erythropolis
PR4]
gi|226186732|dbj|BAH34836.1| putative ABC transporter substrate-binding protein [Rhodococcus
erythropolis PR4]
Length = 312
Score = 83.3 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 30/293 (10%), Positives = 73/293 (24%), Gaps = 22/293 (7%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILE-EILGYKTNIKLL 62
+ LT S V +T+ + + L T+ +
Sbjct: 17 TVVSLTALTACGSSDGDSNSDPNAVVVGSANFTESETIANIYAEALRVNGFDVSTSFNVG 76
Query: 63 AVPVTFRSLKNKGIDIFMGYWY------------PSLEKFIAPYLEEGSIKLVAENLQGA 110
+ +LK+ I + Y S +A +L A
Sbjct: 77 SREAYIPALKDGSISVIPDYTGNLLQYLDPDSTATSSADVLAALPAALGSELAIATPASA 136
Query: 111 KYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFSLKGF 169
+ AV + + IA +G E + + +N +
Sbjct: 137 EDKDAVVVTKETAEKWNLKTIADLAPHSAEVKFGAPAEFQERPAGLPGLKSNYGLDISAA 196
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV 229
+ ++ + + + + + N L + +V V
Sbjct: 197 NFVPIADGGGPATV-KALSSGDITAANIFTTSASIPANNFVVLEDPKNNF--PAQNVVPV 253
Query: 230 VRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNN-KQDRQFVGRTMLRT 279
+R+ + +L + K + + + + K + + +
Sbjct: 254 LRASKSSD--KLKTVLDAVSAKLTTEELLALNVQVSGDTKTEPAAAAKAWVTA 304
>gi|313765501|gb|EFS36865.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL013PA1]
gi|313772950|gb|EFS38916.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL074PA1]
gi|313806539|gb|EFS45046.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL087PA2]
gi|313811086|gb|EFS48800.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL083PA1]
gi|313814412|gb|EFS52126.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL025PA1]
gi|313815097|gb|EFS52811.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL059PA1]
gi|313817406|gb|EFS55120.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL046PA2]
gi|313821851|gb|EFS59565.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL036PA1]
gi|313824255|gb|EFS61969.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL036PA2]
gi|313826619|gb|EFS64333.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL063PA1]
gi|313828620|gb|EFS66334.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL063PA2]
gi|313831852|gb|EFS69566.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL007PA1]
gi|313834606|gb|EFS72320.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL056PA1]
gi|313840163|gb|EFS77877.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL086PA1]
gi|314915857|gb|EFS79688.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL005PA4]
gi|314917133|gb|EFS80964.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL050PA1]
gi|314921408|gb|EFS85239.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL050PA3]
gi|314926665|gb|EFS90496.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL036PA3]
gi|314931269|gb|EFS95100.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL067PA1]
gi|314954907|gb|EFS99313.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL027PA1]
gi|314958840|gb|EFT02942.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL002PA1]
gi|314961131|gb|EFT05232.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL002PA2]
gi|314969541|gb|EFT13639.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL037PA1]
gi|314974607|gb|EFT18702.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL053PA1]
gi|314977200|gb|EFT21295.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL045PA1]
gi|314980388|gb|EFT24482.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL072PA2]
gi|314985702|gb|EFT29794.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL005PA1]
gi|314987227|gb|EFT31318.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL005PA2]
gi|314988882|gb|EFT32973.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL005PA3]
gi|315081992|gb|EFT53968.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL078PA1]
gi|315086223|gb|EFT58199.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL002PA3]
gi|315087806|gb|EFT59782.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL072PA1]
gi|315097443|gb|EFT69419.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL038PA1]
gi|315099892|gb|EFT71868.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL059PA2]
gi|315101798|gb|EFT73774.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL046PA1]
gi|315106451|gb|EFT78427.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL030PA1]
gi|315110245|gb|EFT82221.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL030PA2]
gi|327331472|gb|EGE73211.1| ABC-type glycine betaine transport, substrate-binding protein
[Propionibacterium acnes HL096PA2]
gi|327333459|gb|EGE75179.1| ABC-type glycine betaine transport, substrate-binding protein
[Propionibacterium acnes HL096PA3]
gi|327445518|gb|EGE92172.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL013PA2]
gi|327447138|gb|EGE93792.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL043PA1]
gi|327449827|gb|EGE96481.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL043PA2]
gi|327454675|gb|EGF01330.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL087PA3]
gi|327456749|gb|EGF03404.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL083PA2]
gi|328755731|gb|EGF69347.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL087PA1]
gi|328756511|gb|EGF70127.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL025PA2]
gi|328758761|gb|EGF72377.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL020PA1]
gi|328761815|gb|EGF75328.1| ABC-type glycine betaine transport, substrate-binding protein
[Propionibacterium acnes HL099PA1]
Length = 311
Score = 83.0 bits (203), Expect = 5e-14, Method: Composition-based stats.
Identities = 26/274 (9%), Positives = 73/274 (26%), Gaps = 18/274 (6%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEE-ILGYKTNIKLLAVPVTFRSLKNKGIDI 78
+ +T+ + + LE + K +++ A V ++L++ +++
Sbjct: 37 GSGSGSADLIVGSANFTESEIIAEVYAQSLETVGITIKRRMQIGARDVYVKALQDGSVNL 96
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSY---------- 128
Y L+ F ++A + ++V + A S+
Sbjct: 97 VPEYSGNLLQFFQGASSASDEKSVMASLRKAVPAGMSVGEPSAAQDADSWCVTTEFSHTH 156
Query: 129 --QDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRD 186
+ K+ G E + + S+ + + +
Sbjct: 157 KVTSLTDLATLDSLKVGGNPELKERPYGPKGLTKAYGVPSSIVKFTALSDSSGPLTV-KA 215
Query: 187 QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLK 246
+ + + P + ++ L +V ++ DK +
Sbjct: 216 LTSGTVDLVDLYTTTPAIKEQHLVVLSDPR--HLIVPQNVVPLLSKKVDDKARAQLARVS 273
Query: 247 NIKFSVALENEMMKLIL-NNKQDRQFVGRTMLRT 279
+ M + + K + + L
Sbjct: 274 K-ALTTDDLIGMNQRFQGDEKASAATIAKDWLAQ 306
>gi|50841886|ref|YP_055113.1| putative substrate-binding protein [Propionibacterium acnes
KPA171202]
gi|289426675|ref|ZP_06428404.1| ABC transporter, substrate-binding protein, QAT family
[Propionibacterium acnes J165]
gi|50839488|gb|AAT82155.1| putative substrate-binding protein [Propionibacterium acnes
KPA171202]
gi|289160170|gb|EFD08345.1| ABC transporter, substrate-binding protein, QAT family
[Propionibacterium acnes J165]
gi|332674801|gb|AEE71617.1| putative substrate-binding protein [Propionibacterium acnes 266]
Length = 307
Score = 83.0 bits (203), Expect = 5e-14, Method: Composition-based stats.
Identities = 26/274 (9%), Positives = 73/274 (26%), Gaps = 18/274 (6%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEE-ILGYKTNIKLLAVPVTFRSLKNKGIDI 78
+ +T+ + + LE + K +++ A V ++L++ +++
Sbjct: 33 GSGSGSADLIVGSANFTESEIIAEVYAQSLETVGITIKRRMQIGARDVYVKALQDGSVNL 92
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSY---------- 128
Y L+ F ++A + ++V + A S+
Sbjct: 93 VPEYSGNLLQFFQGASSASDEKSVMASLRKAVPAGMSVGEPSAAQDADSWCVTTEFSHTH 152
Query: 129 --QDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRD 186
+ K+ G E + + S+ + + +
Sbjct: 153 KVTSLTDLATLDSLKVGGNPELKERPYGPKGLTKAYGVPSSIVKFTALSDSSGPLTV-KA 211
Query: 187 QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLK 246
+ + + P + ++ L +V ++ DK +
Sbjct: 212 LTSGTVDLVDLYTTTPAIKEQHLVVLSDPR--HLIVPQNVVPLLSKKVDDKARAQLARVS 269
Query: 247 NIKFSVALENEMMKLIL-NNKQDRQFVGRTMLRT 279
+ M + + K + + L
Sbjct: 270 K-ALTTDDLIGMNQRFQGDEKASAATIAKDWLAQ 302
>gi|315082511|gb|EFT54487.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL027PA2]
Length = 311
Score = 83.0 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 27/274 (9%), Positives = 73/274 (26%), Gaps = 18/274 (6%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEE-ILGYKTNIKLLAVPVTFRSLKNKGIDI 78
+ +T+ + + LE + K +++ A V ++L++ +D+
Sbjct: 37 GSGSGSADLIVGSANFTESEIIAEVYAQSLETVGITIKRRMQIGARDVYVKALQDGSVDL 96
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSY---------- 128
Y L+ F ++A + ++V + A S+
Sbjct: 97 VPEYSGNLLQFFQGASSASDEKSVMASLRKAVPAGMSVGEPSAAQDADSWCVTTEFSHTH 156
Query: 129 --QDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRD 186
+ K+ G E + + S+ + + +
Sbjct: 157 KVTSLTDLATLDSLKVGGNPELKERPYGPKGLTKAYGVPSSIVKFTALSDSSGPLTV-KA 215
Query: 187 QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLK 246
+ + + P + ++ L +V ++ DK +
Sbjct: 216 LTSGTVDLVDLYTTTPAIKEQHLVVLSDPR--HLIVPQNVVPLLSKKVDDKARAQLARVS 273
Query: 247 NIKFSVALENEMMKLIL-NNKQDRQFVGRTMLRT 279
+ M + + K + + L
Sbjct: 274 K-ALTTDDLIGMNQRFQGDEKASAATIAKDWLAQ 306
>gi|256380258|ref|YP_003103918.1| glycine/betaine ABC transporter substrate-binding protein
[Actinosynnema mirum DSM 43827]
gi|255924561|gb|ACU40072.1| Substrate-binding region of ABC-type glycine betaine transport
system [Actinosynnema mirum DSM 43827]
Length = 294
Score = 83.0 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 32/281 (11%), Positives = 87/281 (30%), Gaps = 33/281 (11%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL--AVPVTFRSLKN 73
+S + D + + +T+ + + L+ G K +++ A + ++L++
Sbjct: 25 LSGSGDQAASGEIVVGSADFTENKILAEIYAGALKT-TGAKVSVRSGIGARELVVQALQD 83
Query: 74 KGIDIFMGYWYPSLEKFIA--------------PYLEEGSIKLVAENLQGAKYMLAVNDV 119
K + + Y L F ++++ ++ K +L V
Sbjct: 84 KSLAVVPEYTGNLLVHFDKASTASEAEEVYSALESKLPEGLEVLEKSAAEDKDVLVVTKE 143
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
G+KS D+ + G + G + + + +
Sbjct: 144 TADSGVKSIADLGE-----GKYVLGAAGEWAQR---WEAKIKELYGVTFKEIKTTDAGGP 195
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+ ++ V + + L S + ++ ++R+ +D
Sbjct: 196 VT--VDTLKDGGSQVANLYTTQADIAVNGFVQLEDP--KSMYPAQNILPLLRTGAVDDKG 251
Query: 240 NISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLR 278
+L + + E++K + +K+ V L+
Sbjct: 252 KA--VLDKVSAALTTENVAELVKKVDVDKETVANVAAEFLK 290
>gi|210610118|ref|ZP_03288280.1| hypothetical protein CLONEX_00466 [Clostridium nexile DSM 1787]
gi|210152630|gb|EEA83636.1| hypothetical protein CLONEX_00466 [Clostridium nexile DSM 1787]
Length = 109
Score = 82.6 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 14/106 (13%), Positives = 36/106 (33%), Gaps = 4/106 (3%)
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYL 235
+ V + + S ++ L + + + V+RS+ L
Sbjct: 1 MDMDIGLKYQAINEGKIDVMVIFTTDGQLSVSDVTVLED--DKNFYPSYLCGNVIRSEVL 58
Query: 236 DKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++ P ++ + + S +M + + ++ + V T LR
Sbjct: 59 EEHPELAEIFNKLTGVISDKDMAQMNYAVESEGKEPREVAETFLRN 104
>gi|239942215|ref|ZP_04694152.1| putative ABC transporter substrate-binding protein [Streptomyces
roseosporus NRRL 15998]
gi|239988681|ref|ZP_04709345.1| putative ABC transporter substrate-binding protein [Streptomyces
roseosporus NRRL 11379]
gi|291445669|ref|ZP_06585059.1| amino acid ABC transporter amino acid-binding protein [Streptomyces
roseosporus NRRL 15998]
gi|291348616|gb|EFE75520.1| amino acid ABC transporter amino acid-binding protein [Streptomyces
roseosporus NRRL 15998]
Length = 324
Score = 82.6 bits (202), Expect = 7e-14, Method: Composition-based stats.
Identities = 32/331 (9%), Positives = 86/331 (25%), Gaps = 59/331 (17%)
Query: 3 KILAVCLFLTTFSISYARDADS------------------CTPVRFADTGWTDIAATTAM 44
+I + + + S A + +T+ +
Sbjct: 6 RIAGAVIGMVALAGSLAACGGDSLEQEKSGSGSSAGGDGKKGTLVVGSASFTESKVLAEL 65
Query: 45 TSVILEEILGYKTNIKLLAVPVTFR-SLKNKGIDIFMGYWYP------------------ 85
+ +L + GY T++ + + SL+ ID+ Y
Sbjct: 66 YAQVLGDA-GYSTSVTTVKNRELYEPSLEKGEIDVVPEYAATLAEFLNAKVNGADKAQAD 124
Query: 86 --------SLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKE 137
+ + + ++ + AV+ S + ++ K
Sbjct: 125 PVASGDVEATVSALKQLAAPLGLTVLPAGKAVDQNAFAVSKEFADKN--SLKTLSDLGKS 182
Query: 138 LGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLS 197
E + + + + S ++ R+ + L+
Sbjct: 183 KLKVKIAAGDECEVRPFCAPGLK-KTYGIDVTGIDPKGVGTPVS--KQAVRDGKVQLVLT 239
Query: 198 WEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALE 255
+ + ++ + +V V+ + P I+ L + +
Sbjct: 240 TTTDAVL---DGLVFLEDDKKLQNAD-NVLPVLNTKDAGD-PEIADALGKLTAALTTEDL 294
Query: 256 NEMMKLILNNKQDRQFVGRTMLRTHPDLLKN 286
E+ + + + V + L + DL+K
Sbjct: 295 AELNRKVDAERAKPADVAKEYLES-KDLIKK 324
>gi|39935108|ref|NP_947384.1| glycine betaine ABC transporter substrate-binding protein
[Rhodopseudomonas palustris CGA009]
gi|39648959|emb|CAE27480.1| possible choline ABC transporter permease and substrate binding
protein [Rhodopseudomonas palustris CGA009]
Length = 515
Score = 82.6 bits (202), Expect = 7e-14, Method: Composition-based stats.
Identities = 26/288 (9%), Positives = 69/288 (23%), Gaps = 29/288 (10%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
L + A + T +T+ + LE T L
Sbjct: 232 LGTAGIAAIVIATLLPGAATRTSYVIGAKTFTEQYVLAGLLQQRLEASSLAATTRAGLGS 291
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLE---------------KFIAPYLEEGSIKLVAENLQG 109
V + +L++ ID ++ Y + L + + L+ E
Sbjct: 292 SVIYEALRSGDIDTYVDYSGTLWANQFKHPGIAARDQVLADLKQDLAKDGVTLLGELGFA 351
Query: 110 AKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
Y L + + IA + + ++ + + K
Sbjct: 352 NAYALVMPR--AKAERLKIRVIADLAARAPSMTIAGDYEFFSRPEWANLRSAYGLAFKTE 409
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV 229
R ++ + + + + + + ++ L +
Sbjct: 410 RQMQPDF------MYAAVVSGEVDLIAGYTSDGLIAKYDLVVLDDP--KHAIPPYDAVLL 461
Query: 230 VRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
+ + + L+ + + + + + V R
Sbjct: 462 LAPKRANDI-KLRTALQPLLDRIDIEAMRDANLQ-AGSGSTPNAVARA 507
>gi|255327621|ref|ZP_05368687.1| substrate-binding region of ABC-type glycine betaine transport
system [Rothia mucilaginosa ATCC 25296]
gi|255295295|gb|EET74646.1| substrate-binding region of ABC-type glycine betaine transport
system [Rothia mucilaginosa ATCC 25296]
Length = 321
Score = 82.6 bits (202), Expect = 7e-14, Method: Composition-based stats.
Identities = 31/314 (9%), Positives = 79/314 (25%), Gaps = 44/314 (14%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP--------VRFADTGWTDIAATTAMTSVIL-EEI 52
+ + + S + + + + + L
Sbjct: 15 RRTALTAAGALGMAGILSACGLSGDKVFSGEHEGIIVGSAAFAESQILAEIYAGALARSG 74
Query: 53 LGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWY----------------------PSLEKF 90
+T + + A +L + +D+ Y P+
Sbjct: 75 FNARTQLSIGAREAYLGALASGAVDVIPDYSGNLLLYLDPKATANTAQEILRALPAALGT 134
Query: 91 IAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGN 149
+ I+ + + K L V ++S +D+A L K+
Sbjct: 135 LTTGGSGAEIRALNASEAEDKDSLVVTAQTAQKYSLRSLEDLASRCTNL--KLGAAPEFA 192
Query: 150 EGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNI 209
E I + + S+ + + ++ V + P +
Sbjct: 193 ERAYGIPGLKEKY--GCVPAEFVPLSDGGG-ALTVKALLDDTVQVVDLYSTTPAIEQNKL 249
Query: 210 HYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLIL-NNK 266
L + + V ++ + + + +L + K + A + + +K
Sbjct: 250 VVLEDPKNMIL--AQQVLPIINTSRVPDS--AAEVLNRVSAKLTTADLRTLNDRVSGTSK 305
Query: 267 QDRQFVGRTMLRTH 280
Q+ L H
Sbjct: 306 QEPAQAAAAWLNEH 319
>gi|13476943|ref|NP_108513.1| ABC transporter, periplasmic substrate-binding protein
[Mesorhizobium loti MAFF303099]
gi|14027706|dbj|BAB54299.1| ABC transporter, periplasmic substrate-binding protein
[Mesorhizobium loti MAFF303099]
Length = 317
Score = 82.6 bits (202), Expect = 8e-14, Method: Composition-based stats.
Identities = 40/278 (14%), Positives = 82/278 (29%), Gaps = 28/278 (10%)
Query: 28 VRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGIDIFMGYWYP 85
V + T+ + ++L KT I+L PV +++ IDI+ Y
Sbjct: 39 VVVSSKIDTEGGVLGNIIQLVLNAN-NIKTSDRIQLGGTPVVRKAITAGEIDIYPEYTGN 97
Query: 86 S------------------LEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG-IK 126
+ E + I ++ + +A+ +
Sbjct: 98 AAFFFEKADDPVWKDAAKAYETAKKLDYDANKIVWLSPAPANNTWAIALRKEVSDANKLV 157
Query: 127 SYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINN-NKFSLKGFRLIEASELASFSQIRR 185
+ D KY G + + L F+LK +LI S + + I
Sbjct: 158 TLSDFGKYVAGGGKVVLAASAEFVNSAAALPAFQTTYGFTLKPDQLITLSGGDTAATIAA 217
Query: 186 DQRNNIP-AVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
+ + + + L + + ++R L + P I L
Sbjct: 218 AANQTSGANAAMVYGTDGGIAPSGLVVLEDDKGV--QPVYQPAPIIRESVLKQHPEIETL 275
Query: 245 LKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
LK + K + E+ + + + V L+ +
Sbjct: 276 LKPVFAKLDLVTLQELNGRVQVGGEPVKGVAEDFLKKN 313
>gi|315299369|gb|EFU58621.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Escherichia coli MS 16-3]
Length = 261
Score = 82.6 bits (202), Expect = 8e-14, Method: Composition-based stats.
Identities = 34/268 (12%), Positives = 74/268 (27%), Gaps = 33/268 (12%)
Query: 47 VILEEILGYKT--NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS----- 99
+LE G T ++L PV ++ + +DI+ Y F
Sbjct: 2 QVLESH-GVPTVNKVQLGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDTAWKNAQQG 60
Query: 100 -------------IKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYG 144
+ + + +AV + + K+
Sbjct: 61 YEKVKKLDAEQNKLIWLTPAPANNTWTIAVRQDVAEKNKLTSLAELSRYLKEGGNFKLAA 120
Query: 145 IEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPI 203
E + F L +L+ + + I+ + + +++
Sbjct: 121 SAEFIERADALPAFEKAYGFKLGQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGP 180
Query: 204 NSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKL 261
+ L + L + + + VVR L + P I++ L+ + ++
Sbjct: 181 VAALGLQTLSDPQGV--QPIYAPAPVVRESVLKEYPQIAQWLQPVFASLDEKTLQQLNAS 238
Query: 262 ILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
I D + V L+ K W
Sbjct: 239 IAVEGLDAKKVAADYLKQ-----KGWTK 261
>gi|328883291|emb|CCA56530.1| L-proline glycine betaine binding ABC transporter protein ProX
[Streptomyces venezuelae ATCC 10712]
Length = 335
Score = 82.2 bits (201), Expect = 9e-14, Method: Composition-based stats.
Identities = 33/284 (11%), Positives = 76/284 (26%), Gaps = 38/284 (13%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFR-SLKNKGIDIFMGY 82
+ +T+ + + L GY +I + + SL+ ID+ Y
Sbjct: 54 EKGSLVVGAAAFTEAKVLAELYAQSLRNA-GYSVSITTVKNRELYEPSLEKGEIDVVPEY 112
Query: 83 --------------------------WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ + + E +K++A + AV
Sbjct: 113 AATIAEFLNAKVNGPKAPEDKPVASGDATATVEALRKLAEPRGLKVLAVGGAVDQNAFAV 172
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
K L KI + + + G +
Sbjct: 173 TKEFAEKNKLKTLSDLGASK-LKVKIAAGDECAVRPFCAPGLKKTYGIDVTGID----PK 227
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
Q ++ ++ + + L+ + +L +++ +V VV +
Sbjct: 228 GVGTPQAKQAVKDGVDQLVLTTTTDATVDSYGLVFLEDDKKL--QNADNVLPVVNAKDAG 285
Query: 237 KCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLR 278
I+ L I + A E+ + + + + V + L
Sbjct: 286 SA-EIAAALDKITKVLTTADLAELNRKVDAERAKPEDVAKEYLE 328
>gi|118472753|ref|YP_889409.1| glycine/betaine ABC transporter periplasmic protein [Mycobacterium
smegmatis str. MC2 155]
gi|118174040|gb|ABK74936.1| ABC proline/glycine betaine family protein transporter, periplasmic
ligand binding protein [Mycobacterium smegmatis str. MC2
155]
Length = 250
Score = 82.2 bits (201), Expect = 9e-14, Method: Composition-based stats.
Identities = 29/209 (13%), Positives = 61/209 (29%), Gaps = 5/209 (2%)
Query: 26 TPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYP 85
P+R + A ++L G++ + + F ++ +D+ + W P
Sbjct: 3 RPIRVGHIALSFHDAAAEQVELVLRSA-GHEIERRSAPHELMFDAIGRGEVDLLVAAWLP 61
Query: 86 SLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK-KELGAKIYG 144
+ + + L + V + A +A + I G
Sbjct: 62 WSHGRYFDPIADH--VRMVTVLYEPYPIWGVPEYVPAQVASIPDLLAAPAADHMERLIQG 119
Query: 145 IEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPIN 204
+ PG ++ I G+ +E + V W P ++
Sbjct: 120 MAPGAGISEMSPRAIETYGLDDAGYHFAHGTEDECIGRFVDAVAQRRWVVIPFWHPQALH 179
Query: 205 SDLNIHYLPGGEEISGFGEASVYTVVRSD 233
I L + G + + +VR D
Sbjct: 180 KRFRIRRLQDPRLVLGATD-NATLLVRKD 207
>gi|227548201|ref|ZP_03978250.1| ABC family glycine betaine transport, substrate-binding protein
[Corynebacterium lipophiloflavum DSM 44291]
gi|227079762|gb|EEI17725.1| ABC family glycine betaine transport, substrate-binding protein
[Corynebacterium lipophiloflavum DSM 44291]
Length = 297
Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/274 (9%), Positives = 70/274 (25%), Gaps = 23/274 (8%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVIL-EEILGYKTNIKLLAVPVTFRSLKNKGIDI 78
+ V + + + + L +E N + + V +L+ I++
Sbjct: 27 AVSGEAGTVVIGTANFPESEIIGQIWAEALRQEGFDVDVNSGIGSREVYLGALQEGSINV 86
Query: 79 FMGYWYPSLEKF--------IAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD 130
Y + + ++ + +K V +
Sbjct: 87 VPEYSGNLTQFYGGTPADEAALAEALPDDLEAGDFSPAESKDAYRVTRQLADE--RGLGT 144
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
IA K I E + + + S+ + +
Sbjct: 145 IADLDKLDQITIAAPPEFAERPYGPAGLSDIYGIDAAKISVNPISDGGGPLTV-QALVEG 203
Query: 191 IPAVFLSWEPHPIN----SDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLK 246
V + P + ++ L E + +V V+++ L ++
Sbjct: 204 AANVGNIFTTSPALLSNGEEADVVILEDPENL--IPPQNVVPVIKAGSLPDG--ALDVIN 259
Query: 247 --NIKFSVALENEMMKL-ILNNKQDRQFVGRTML 277
N + + EM + + + + + +
Sbjct: 260 SVNAQLTTEDLVEMNLRNVGPERAEPSAIAQDFV 293
>gi|314928581|gb|EFS92412.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL044PA1]
Length = 310
Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/264 (10%), Positives = 74/264 (28%), Gaps = 24/264 (9%)
Query: 33 TGWTDIAATTAMTSVILEEILGYKTNI--KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKF 90
+T+ + + LE+ G ++ + ++LK+ +D+ Y L+ F
Sbjct: 50 ANFTESEIIAEVYAQSLEKA-GITVKRRMQIGTRDIYVKALKDGSVDLVPEYSGNLLQFF 108
Query: 91 IAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSY------------QDIAKYKKEL 138
++A + + V + A S+ +A K
Sbjct: 109 QGTPSASDETSVMAALRRSMPAGMTVGEPSAAHDADSWCVTAEFSQSHKVTSLADLAKLN 168
Query: 139 GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
K+ G E + S+ + + + + + +
Sbjct: 169 SFKVGGNPELKERPYGPKGLTKVYGVPASKITFTALSDSSGPLTV-KALTSRTVDLVDLY 227
Query: 199 EPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALEN 256
P + ++ L + + ++ ++ DK + L + +
Sbjct: 228 TTTPAIKEQHLVVLSDPKHLIM--AQNIVPLMNKKVDDK---ARKQLAKVSRALTTDDLI 282
Query: 257 EMMKLIL-NNKQDRQFVGRTMLRT 279
M + + K + + L
Sbjct: 283 AMNQRSQGDEKASAATIAKDWLAK 306
>gi|182437893|ref|YP_001825612.1| putative ABC transporter substrate-binding protein [Streptomyces
griseus subsp. griseus NBRC 13350]
gi|178466409|dbj|BAG20929.1| putative ABC transporter substrate-binding protein [Streptomyces
griseus subsp. griseus NBRC 13350]
Length = 322
Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 31/321 (9%), Positives = 79/321 (24%), Gaps = 56/321 (17%)
Query: 3 KILAVCLFLTTFSISYARDADSC----------------TPVRFADTGWTDIAATTAMTS 46
+I + + + S A + +T+ + +
Sbjct: 6 RIAGAVIGVVALAGSLAACGGDSLEQEKGSGSSGGGSEKGSLVVGSASFTESKVLAELYA 65
Query: 47 VILEEILGYKTNIKLLAVPVTFR-SLKNKGIDIFMGY----------------------- 82
IL + GY T+I + + SL+ ID+ Y
Sbjct: 66 QILGDA-GYDTSITTVKNRELYEPSLEKGEIDVVPEYAATITEFLNAKVNGAEKAQSTPL 124
Query: 83 ---WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
+ + +K++ + AV+ + ++ K
Sbjct: 125 ASPDADATVAALEKLAGPLGLKVLPAGKAVDQNAFAVSKEFAEKNKLT--TLSDLGKSKL 182
Query: 140 AKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWE 199
E + + Q ++ R+ + L+
Sbjct: 183 EVKIAAGDECEVRPFCAPGLKKTYGIDVTG---IDPKGVGTPQSKQAVRDGKVQLVLTTT 239
Query: 200 PHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENE 257
+ + ++ + +V V+ + P I+ L + + E
Sbjct: 240 TDAVL---DGLVFLEDDKKLQNAD-NVLPVLNAKDAGS-PEIAAALGKLTDALTTEDLAE 294
Query: 258 MMKLILNNKQDRQFVGRTMLR 278
+ + + + V + L
Sbjct: 295 LNRKVDAERAKPADVAKEYLE 315
>gi|163744372|ref|ZP_02151732.1| ABC transporter, periplasmic substrate-binding protein
[Oceanibulbus indolifex HEL-45]
gi|161381190|gb|EDQ05599.1| ABC transporter, periplasmic substrate-binding protein
[Oceanibulbus indolifex HEL-45]
Length = 332
Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 29/268 (10%), Positives = 73/268 (27%), Gaps = 28/268 (10%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPVTFRSLKNKGIDIFMGYWY 84
+ + T+ + ++ LE+ G ++L V ++ + IDI+ Y
Sbjct: 25 EITVSSKIDTEGGLLGNVIALALEDA-GLPVERRLQLGGTQVVREAILSDQIDIYPEYTG 83
Query: 85 P-------SLEKFIAPYLEEG-----------SIKLVAENLQGAKYMLAVNDVGFALGIK 126
+ + I + + +AV
Sbjct: 84 NAAFFFNEAESDVWKDAAKAHARAKELDGGENKITWLDSAPANNTWAIAVTGPLAEENNL 143
Query: 127 SYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
+ + K+ + M F L + + S + + I+
Sbjct: 144 TTMSDFGAWVAEGGAVKLAASTEFVSSPAVLPAMQETYGFELSQDQTVILSGGDTAATIQ 203
Query: 185 RDQR-NNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
R + + + + + + + +VR++ L++ P I+
Sbjct: 204 AAARGTSGVNAAMVYGTDGGVGATGLVVMEDDKGV--QPVYEPAPIVRAEVLEEYPQIAE 261
Query: 244 LLKNIK--FSVALENEMMKLILNNKQDR 269
+L I +A ++ I
Sbjct: 262 VLNPIFAGLDMATLQKLNGRIQVGAARP 289
>gi|313835544|gb|EFS73258.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL037PA2]
gi|314970370|gb|EFT14468.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Propionibacterium acnes
HL037PA3]
Length = 310
Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/264 (10%), Positives = 74/264 (28%), Gaps = 24/264 (9%)
Query: 33 TGWTDIAATTAMTSVILEEILGYKTNI--KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKF 90
+T+ + + LE+ G ++ + ++LK+ +D+ Y L+ F
Sbjct: 50 ANFTESEIIAEVYAQSLEKA-GITVKRRMQIGTRDIYVKALKDGSVDLVPEYSGNLLQFF 108
Query: 91 IAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSY------------QDIAKYKKEL 138
++A + + V + A S+ +A K
Sbjct: 109 QGTPSASDETSVMAALRRSMPAGMTVGEPSAAHDADSWCVTAEFSQSHKVTSLADLAKLN 168
Query: 139 GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
K+ G E + S+ + + + + + +
Sbjct: 169 SFKVGGNPELKERPYGPKGLTKVYGVPASKITFTALSDSSGPLTV-KALTSRTVDLVDLY 227
Query: 199 EPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALEN 256
P + ++ L + + ++ ++ DK + L + +
Sbjct: 228 TTTPAIKEQHLVVLSDPKHLIM--AQNIVPLMNKKVDDK---ARKQLAKVSRALTTDDLI 282
Query: 257 EMMKLIL-NNKQDRQFVGRTMLRT 279
M + + K + + L
Sbjct: 283 AMNQRSQGDEKASAATIAKDWLAK 306
>gi|328908196|gb|EGG27955.1| ABC transporter, substrate-binding protein, QAT family
[Propionibacterium sp. P08]
Length = 306
Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/264 (10%), Positives = 74/264 (28%), Gaps = 24/264 (9%)
Query: 33 TGWTDIAATTAMTSVILEEILGYKTNI--KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKF 90
+T+ + + LE+ G ++ + ++LK+ +D+ Y L+ F
Sbjct: 46 ANFTESEIIAEVYAQSLEKA-GITVKRRMQIGTRDIYVKALKDGSVDLVPEYSGNLLQFF 104
Query: 91 IAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSY------------QDIAKYKKEL 138
++A + + V + A S+ +A K
Sbjct: 105 QGTPSASDETSVMAALRRSMPAGMTVGEPSAAHDADSWCVTAEFSQSHKVTSLADLAKLN 164
Query: 139 GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
K+ G E + S+ + + + + + +
Sbjct: 165 SFKVGGNPELKERPYGPKGLTKVYGVPASKITFTALSDSSGPLTV-KALTSRTVDLVDLY 223
Query: 199 EPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALEN 256
P + ++ L + + ++ ++ DK + L + +
Sbjct: 224 TTTPAIKEQHLVVLSDPKHLIM--AQNIVPLMNKKVDDK---ARKQLAKVSRALTTDDLI 278
Query: 257 EMMKLIL-NNKQDRQFVGRTMLRT 279
M + + K + + L
Sbjct: 279 AMNQRSQGDEKASAATIAKDWLAK 302
>gi|295129959|ref|YP_003580622.1| ABC transporter, substrate-binding protein, QAT family
[Propionibacterium acnes SK137]
gi|291375678|gb|ADD99532.1| ABC transporter, substrate-binding protein, QAT family
[Propionibacterium acnes SK137]
Length = 307
Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/274 (9%), Positives = 72/274 (26%), Gaps = 18/274 (6%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEE-ILGYKTNIKLLAVPVTFRSLKNKGIDI 78
+ +T+ + + LE + K +++ A V ++L++ +++
Sbjct: 33 GSGSGSADLIVGSANFTESEIIAEVYAQSLETVGITIKRRMQIGARDVYVKALQDGSVNL 92
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSY---------- 128
Y L+ F ++A + ++V + A S+
Sbjct: 93 VPEYSGNLLQFFQGASSASDEKSVMASLRKAVPAGMSVGEPSAAQDADSWCVTTEFSHTH 152
Query: 129 --QDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRD 186
+ K+ G E + + S+ + + +
Sbjct: 153 KVTSLTDLATLDSLKVGGNPELKERPYGPKGLTKAYGVPSSIVKFTALSDSSGPLTV-KA 211
Query: 187 QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLK 246
+ + P + ++ L +V ++ DK +
Sbjct: 212 LTLGTVDLVDLYTTTPAIKEQHLVVLSDPR--HLIVPQNVVPLLSKKVDDKARAQLARVS 269
Query: 247 NIKFSVALENEMMKLIL-NNKQDRQFVGRTMLRT 279
+ M + + K + + L
Sbjct: 270 K-ALTTDDLIGMNQRFQGDEKASAATIAKDWLAQ 302
>gi|297159341|gb|ADI09053.1| putative ABC transporter substrate-binding protein [Streptomyces
bingchenggensis BCW-1]
Length = 311
Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 39/294 (13%), Positives = 84/294 (28%), Gaps = 35/294 (11%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTF-RS 70
T + + S V +T+ A+ + +LE+ GYKT+IK + + S
Sbjct: 21 LTACGGDSLEKKSEDSVVVGAANFTESKILAALYTGLLEDA-GYKTSIKTVDSRELYAPS 79
Query: 71 LKNKGIDIFMGYWYPSLE-----------------------KFIAPYLEEGSIKLVAENL 107
L+ ID+ Y E K + E +K +
Sbjct: 80 LEKGEIDVVPEYAATMAEYLNLKKNGPKAKPVASSDVDATVKVLRELAEPRGLKALEPGE 139
Query: 108 QGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
+ AV + K+ G E + + +
Sbjct: 140 AVDQNAFAVRKDFASEHSLKTLSDLGKSKQKIKLAAGDE---CPKRPFCQPGLEKTYGID 196
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
+ + + ++ ++ + L+ + L +++ +V
Sbjct: 197 ITGIDPLDIGSVQA--KQAVKDGKDEMLLTTSTDATLDQFGLVLLADDKKL--QNADNVL 252
Query: 228 TVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
VV + I+ L + + A E+ K + + V + L+
Sbjct: 253 PVVNAKSAGSE-KIANALNKLNKVLTTADLTELNKKVDAERLKASDVAKDYLKE 305
>gi|327334985|gb|EGE76696.1| ABC-type glycine betaine transport, substrate-binding protein
[Propionibacterium acnes HL097PA1]
Length = 311
Score = 81.4 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/274 (9%), Positives = 73/274 (26%), Gaps = 18/274 (6%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEE-ILGYKTNIKLLAVPVTFRSLKNKGIDI 78
+ +T+ + + LE + K +++ A V ++L++ +++
Sbjct: 37 GSGSGSADLIVGSANFTESEIIAEVYAQSLETVGIMIKRRMQIGARDVYVKALQDGSVNL 96
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSY---------- 128
Y L+ F ++A + ++V + A S+
Sbjct: 97 VPEYSGNLLQFFQGASSASDEKSVMASLRKAVPAGMSVGEPSAAQDADSWCVTTEFSHTH 156
Query: 129 --QDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRD 186
+ K+ G E + + S+ + + +
Sbjct: 157 KVTSLTDLATLDSLKVGGNPELKERPYGPKGLTKAYGVPSSIVKFTALSDSSGPLTV-KA 215
Query: 187 QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLK 246
+ + + P + ++ L +V ++ DK +
Sbjct: 216 LTSGTVDLVDLYTTTPAIKEQHLVVLSDPR--HLIVPQNVVPLLSKKVDDKARAQLARVS 273
Query: 247 NIKFSVALENEMMKLIL-NNKQDRQFVGRTMLRT 279
+ M + + K + + L
Sbjct: 274 K-ALTTDDLIGMNQRFQGDEKASAATIAKDWLAQ 306
>gi|256423944|ref|YP_003124597.1| glycine/betaine ABC transporter ATP-binding protein [Chitinophaga
pinensis DSM 2588]
gi|256038852|gb|ACU62396.1| binding-protein-dependent transport systems inner membrane
component [Chitinophaga pinensis DSM 2588]
Length = 522
Score = 81.4 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 20/139 (14%), Positives = 42/139 (30%), Gaps = 4/139 (2%)
Query: 143 YGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP 202
YG + + N + + L + + S + + V
Sbjct: 236 YGSSLVAGFTPEFMGRKDGNLGLKQVYGLNMRTVVISDMIMYKAAYEKTLDVISGSSTDG 295
Query: 203 INSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMK 260
++ L + F + R LDK P ++ L + + ++ E+
Sbjct: 296 RVKAFDLQVLED--DKHIFPPYYAAPIARQATLDKYPELAPALNKLSGIINDSVMTELNY 353
Query: 261 LILNNKQDRQFVGRTMLRT 279
+ + KQD V L+
Sbjct: 354 RVDHLKQDPALVASDFLKA 372
Score = 49.4 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 45/159 (28%), Gaps = 25/159 (15%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK--TNIKLL 62
L FL + + V + D M +++ + T L
Sbjct: 364 LVASDFLKAKGLLQPARKGAKGTVVIGAKIFGDGYILANMYKLLVNGYTDLEAVTKTGLG 423
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFI----------------------APYLEEGSI 100
+ F +L + ID++ Y L + ++++ I
Sbjct: 424 GTKICFDALTSGQIDLYPEYTGTGLLVILQTDKAVIDSLIADKQKVYDYVSQAFIQQYQI 483
Query: 101 KLVAENLQGAKYMLAVND-VGFALGIKSYQDIAKYKKEL 138
+ + Y L + L I S D+ +Y +
Sbjct: 484 RWLPPIGFNNTYALMMRKQQAAELHITSISDLKEYLQHH 522
>gi|293405600|ref|ZP_06649592.1| amine ABC transporter [Escherichia coli FVEC1412]
gi|291427808|gb|EFF00835.1| amine ABC transporter [Escherichia coli FVEC1412]
Length = 278
Score = 81.4 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 37/275 (13%), Positives = 80/275 (29%), Gaps = 29/275 (10%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
K+ A L L + A PV+ T+ A + +LE G T ++
Sbjct: 5 KLWAGSLVLLAAVSLPLQAAS---PVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQ 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEG------------------SIKL 102
L PV ++ + +DI+ Y F +
Sbjct: 61 LGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDAAWKNAGQGYEKVKKLDAEQNKLIW 120
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMIN 160
+ + +AV + + K+ E +
Sbjct: 121 LTPAPANNTWTIAVRQDVAEKNKLTSLADLSRYLKEGGTFKLAASAEFIERADALPAFEK 180
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F L +L+ + + I+ + + +++ + L + L + +
Sbjct: 181 AYGFKLGQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV- 239
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVAL 254
+ VVR L + P +++ L+ + S+
Sbjct: 240 -QPIYAPAPVVRESVLKEYPQMAQWLQPVFASLDE 273
>gi|283458826|ref|YP_003363468.1| ABC transporter periplasmic glycine betaine/choline-binding
(lipo)protein [Rothia mucilaginosa DY-18]
gi|283134883|dbj|BAI65648.1| periplasmic glycine betaine/choline-binding (lipo)protein of an
ABC-type transport system [Rothia mucilaginosa DY-18]
Length = 324
Score = 81.4 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/314 (10%), Positives = 80/314 (25%), Gaps = 44/314 (14%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP--------VRFADTGWTDIAATTAMTSVIL-EEI 52
+ + + S + + + + + L
Sbjct: 18 RRTALTAAGALGMAGILSACGLSGDKVFSGEHEGIIVGSAAFAESQILAEIYAGALARAG 77
Query: 53 LGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWY----------------------PSLEKF 90
+T + + A +L + +D+ Y P+
Sbjct: 78 FNARTQLSIGAREAYLGALASGAVDVIPDYSGNLLLYLDPKATASTAEQILQALPAALGT 137
Query: 91 IAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGN 149
+ I+ + + K L V ++S +D+A L K+
Sbjct: 138 LKTDGSGAEIRALNASEAEDKDSLVVTAQTAQKYGLRSLEDLASRCTNL--KLGAAPEFA 195
Query: 150 EGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNI 209
E I + + S+ + + ++ V + P +
Sbjct: 196 ERAYGIPGLKEKY--GCVPAEFVPLSDGGG-ALTVKALLDDTVQVVDLYSTTPAIEQNQL 252
Query: 210 HYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLIL-NNK 266
L + + V ++ + + + +L + K + A + + +K
Sbjct: 253 VVLEDPKNMIL--AQQVLPIINTSRVPDS--AAEVLNRVSAKLTTADLRTLNDRVSGTSK 308
Query: 267 QDRQFVGRTMLRTH 280
Q+ T L H
Sbjct: 309 QEPAQAAATWLNEH 322
>gi|167572353|ref|ZP_02365227.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
oklahomensis C6786]
Length = 76
Score = 81.0 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 38/72 (52%)
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDG 296
+C N++RL + + F+V LENEM+ +L K + LR HP L+ WL GVTT G
Sbjct: 3 RCANLARLFRQMTFTVDLENEMIAGMLQEKLSAVDAAQRALRAHPSLVDEWLGGVTTATG 62
Query: 297 QDPSRQLERFMN 308
+ ++
Sbjct: 63 APGLPAVRAALD 74
>gi|312889854|ref|ZP_07749399.1| Substrate-binding region of ABC-type glycine betaine transport
system [Mucilaginibacter paludis DSM 18603]
gi|311297653|gb|EFQ74777.1| Substrate-binding region of ABC-type glycine betaine transport
system [Mucilaginibacter paludis DSM 18603]
Length = 523
Score = 81.0 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 16/137 (11%), Positives = 41/137 (29%), Gaps = 4/137 (2%)
Query: 143 YGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP 202
YG + + + + + + L + + S + + + V +
Sbjct: 237 YGGKLTAGFTPEFMGRKDGDLGLKQKYGLKIHTVVISDAVMYKAAYEKHLDVISGYSTDG 296
Query: 203 INSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMK 260
++ L + I +V L K P + L + + ++ E+
Sbjct: 297 RLKAFDLVVLKDDKGIF--PPYYAAPIVSGTALQKFPKLEATLNLLSGHITDSIMTELNY 354
Query: 261 LILNNKQDRQFVGRTML 277
+ Q + V + L
Sbjct: 355 RVDYLHQSPEAVAKDFL 371
Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 35/132 (26%), Gaps = 10/132 (7%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGIDIFM 80
S VR + + M S++++ Y L + F +L N ID +
Sbjct: 383 GSAGTVRIGSKIFGEQYILAGMYSLLIKGNTDYDVATKTGLGGTKICFDALTNNQIDFYP 442
Query: 81 GYWYPSLEKFIAP--------YLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIA 132
Y L + ++ + KY + +
Sbjct: 443 EYTGTGLLVMLQADSKTIDSLAGDKQKVYNYVSGQFKTKYGILWLKPIGFNNAYALMMRR 502
Query: 133 KYKKELGAKIYG 144
K + L K
Sbjct: 503 KQAQSLDIKTIS 514
>gi|289424164|ref|ZP_06425947.1| ABC transporter, substrate-binding protein, QAT family
[Propionibacterium acnes SK187]
gi|289154861|gb|EFD03543.1| ABC transporter, substrate-binding protein, QAT family
[Propionibacterium acnes SK187]
Length = 307
Score = 81.0 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/274 (9%), Positives = 73/274 (26%), Gaps = 18/274 (6%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEE-ILGYKTNIKLLAVPVTFRSLKNKGIDI 78
+ +T+ + + LE + K +++ A V ++L++ +++
Sbjct: 33 GSGSGSADLIVGSANFTESEIIAEVYAQSLETVGITIKRRMQIGARDVYVKALQDGSVNL 92
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSY---------- 128
Y L+ F ++A + ++V + A S+
Sbjct: 93 VPEYSGNLLQFFQGASSASDEKSVMASLRKAVPAGMSVGEPSAAQDADSWCVTTEFSHTH 152
Query: 129 --QDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRD 186
+ K+ G E + + S+ + + +
Sbjct: 153 KVTSLTDLATLDSLKVGGNPELKERPYGPKGLTKAYGVPSSIVKFTALSDSSGPLTV-KA 211
Query: 187 QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLK 246
+ + + P + ++ L +V ++ DK +
Sbjct: 212 LTSGTVDLVDLYTTTPAIKEQHLVVLSDPR--HLIVPQNVVPLLSKKVDDKARAQLARVS 269
Query: 247 NIKFSVALENEMMKLIL-NNKQDRQFVGRTMLRT 279
+ M + + K + + L
Sbjct: 270 K-ALTTDDLIGMNQRFQGDEKPSAATIAKDWLAQ 302
>gi|197104395|ref|YP_002129772.1| substrate-binding region of ABC-type glycine betaine transport
system [Phenylobacterium zucineum HLK1]
gi|196477815|gb|ACG77343.1| substrate-binding region of ABC-type glycine betaine transport
system [Phenylobacterium zucineum HLK1]
Length = 521
Score = 81.0 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/267 (9%), Positives = 63/267 (23%), Gaps = 33/267 (12%)
Query: 29 RFADTGWTDIAATTAMTSVILEEILGYKTNIKL-LAVPVTFRSLKNKGIDIFMGYWYPSL 87
+++ + + LE G + K L V +R+L ID+++ Y
Sbjct: 259 VVGAKNFSEQYILAELMAHRLE-RTGARVARKEDLGSAVAYRALAAGEIDVYVDYSGTLW 317
Query: 88 EKFI----------------APYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDI 131
+ + ++++ Y + D+
Sbjct: 318 TNVLGRADNPGRAAVLDQLTSELDRRDGVRVLGSLGFENAYAFVMRPDRARA--LGVADL 375
Query: 132 AKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI 191
+E G + + + ++ + + R
Sbjct: 376 DDLAREAPGLALGSDLEFLSRPEWRAVEAAYGLKFR------SARSYQPTFMYRALAGGE 429
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--K 249
V ++ + + LP ++ D P + L+ +
Sbjct: 430 ADVISAFSSDGRIAAGGLVVLPDPRGA--IPPYDAVILISPARRDD-PRLLAALRPLVGA 486
Query: 250 FSVALENEMMKLILNN--KQDRQFVGR 274
V + + K R
Sbjct: 487 IPVEAMRAANYSVDRDSGKATPAGAAR 513
>gi|255035043|ref|YP_003085664.1| binding-protein-dependent transport systems inner membrane
component [Dyadobacter fermentans DSM 18053]
gi|254947799|gb|ACT92499.1| binding-protein-dependent transport systems inner membrane
component [Dyadobacter fermentans DSM 18053]
Length = 525
Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 40/131 (30%), Gaps = 4/131 (3%)
Query: 149 NEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLN 208
+ + + L + + S + + + V + +
Sbjct: 241 AGFTPEFMGREDGYLGLKSRYGLDIPTVVISDAVMYKAAFEQKLDVISGYSTDGRLKAFD 300
Query: 209 IHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNK 266
+ L + F VVR + L + P + +L+ + + ++ E+ + K
Sbjct: 301 LMTLDD--DQHIFPPYYAAPVVRQEVLSQYPELQPVLEQLSGYINDSVMTELNYRVDYLK 358
Query: 267 QDRQFVGRTML 277
Q + V L
Sbjct: 359 QAPERVAHDFL 369
Score = 52.5 bits (124), Expect = 9e-05, Method: Composition-based stats.
Identities = 21/144 (14%), Positives = 40/144 (27%), Gaps = 25/144 (17%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYK--TNIKLLAVPVTFRSLKNKGIDIFM 80
+ +R + + M ++E K T L + F +L N ID++
Sbjct: 381 GNKGTIRLGSKIFAEQYILIQMYKELIEGNTELKAATKTGLGGTKICFDALSNGEIDMYP 440
Query: 81 GYWYPSLEKFIA----------------------PYLEEGSIKLVAENLQGAKYMLAVND 118
Y L + +LE ++ + Y L +
Sbjct: 441 EYTGTGLLAILKPGRAQLKSLGGDREEVYEYVKNEFLERYRLQWLRPIGFNNAYALMMRR 500
Query: 119 VGFAL-GIKSYQDIAKYKKELGAK 141
I+S D+ Y +
Sbjct: 501 AQAQSLNIQSITDLKNYATNGNHR 524
>gi|154508417|ref|ZP_02044059.1| hypothetical protein ACTODO_00914 [Actinomyces odontolyticus ATCC
17982]
gi|153798051|gb|EDN80471.1| hypothetical protein ACTODO_00914 [Actinomyces odontolyticus ATCC
17982]
Length = 305
Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 30/274 (10%), Positives = 70/274 (25%), Gaps = 18/274 (6%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--LLAVPVTFRSLKN 73
S + T + + + LE G+ + + + V ++
Sbjct: 31 TSTGGSENGSTTLIVGSQDYYSNEIIAEAYAQALEGA-GFTVDRQLRIGQREVYMPEIEA 89
Query: 74 KGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAK 133
ID+F Y L+ A + ++ A L + A SY A
Sbjct: 90 GAIDVFPEYTGNLLQYLDADATARSTDEVYAALQTALPSGLRALEQAPATDQDSYVVTAD 149
Query: 134 YKKELGAKIYGIEPGNE-GNQRILDMINNNKFSLKGFRLIEASELASFS-------QIRR 185
+ G + + G + +
Sbjct: 150 FAAAHSLTSIGDLASAGTLTLGGNSELQTRPYGPTGLSQTYGVTVGFTPIEDSGGPLTVK 209
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
++ + + P +D + L + + + V + S D + ++
Sbjct: 210 ALKDGDIQLANIYSSDPALADGTLKVLDDPKGLFL--ASHVVPLASSRVGD---EAAAVI 264
Query: 246 KNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
+ EM + +++ + R L
Sbjct: 265 NRVSAAMDAQDLVEMNRASTVDQKSASQIAREWL 298
>gi|223986519|ref|ZP_03636518.1| hypothetical protein HOLDEFILI_03833 [Holdemania filiformis DSM
12042]
gi|223961515|gb|EEF66028.1| hypothetical protein HOLDEFILI_03833 [Holdemania filiformis DSM
12042]
Length = 302
Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 39/283 (13%), Positives = 88/283 (31%), Gaps = 30/283 (10%)
Query: 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI-KLLAVPVTFRSLKNKGID 77
+ ++ D T+ M +++E+ +I + + + +K + D
Sbjct: 19 GCSSKKENVIKIVDGRVTEQKLVHRMIKMLVEDRTDLTVSIGEEMTAVNAYNEMKKRVYD 78
Query: 78 IFMGYWYPSLEKF----------------IAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
++M Y L F L + KLV N G AV
Sbjct: 79 VYMSYDGTVLTTFLHRDPSEVPAGSTLFDYTNGLFQEQDKLVMVNKLGLDNTYAVAVPKE 138
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
+ + I ++ E ++ + + F+ + + S
Sbjct: 139 IQSKYNLKTITDLVAVAPELVFSAEHEFFDDEGTM---KFDPFTTFYGLTFKNTRPVDLS 195
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDK---- 237
+ V +++ N + + L + F E + +V+ D ++
Sbjct: 196 LKYSTMESGNADVTVAYATDGRNKKVQLQILED--DQHFFPEYNGVIIVQEDLFERVKAI 253
Query: 238 CPNISR---LLKNIKFSVALENEMMKLILNNKQDRQFVGRTML 277
P++ LL NI F+ ++ + +++ V R L
Sbjct: 254 APDLEATLHLLDNI-FTNESMTDLSYQVDIEEKNLDDVARQFL 295
>gi|293194673|ref|ZP_06610041.1| glycine betaine/choline-binding protein of an ABC-type transport
system [Actinomyces odontolyticus F0309]
gi|292819652|gb|EFF78671.1| glycine betaine/choline-binding protein of an ABC-type transport
system [Actinomyces odontolyticus F0309]
Length = 305
Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/272 (11%), Positives = 69/272 (25%), Gaps = 14/272 (5%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--LLAVPVTFRSLKN 73
S + T + + + LE G+ + + + V ++
Sbjct: 31 TSTGGSENGSTTLIVGSQDYYSNEIIAEAYAQALEGA-GFTVDRQLRIGQREVYMPEIEA 89
Query: 74 KGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAK 133
ID+F Y L+ A + ++ A L + A SY A
Sbjct: 90 GAIDVFPEYTGNLLQYLDADATARSTDEVYAALQTALPSGLRALEQAPATDQDSYVVTAD 149
Query: 134 YKKELGAKIYGIEPGNE-GNQRILDMINNNKFSLKGFRLIEASELASFS-------QIRR 185
+ G + + G + +
Sbjct: 150 FAAAHSLASIGDLASAGTLTLGGNSELQTRPYGPTGLSQTYGVTVGFTPIEDSGGPLTVK 209
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
++ + + P +D + L + + + V + S D+ + +
Sbjct: 210 ALKDGDIQLANIYSSDPALADGTLKVLDDPKGLFL--ASHVVPLASSRVSDQAAAVINRV 267
Query: 246 KNIKFSVALENEMMKLILNNKQDRQFVGRTML 277
EM + +++ + R L
Sbjct: 268 SA-AMDAQDLVEMNRASTVDQKSASQIAREWL 298
>gi|288920805|ref|ZP_06415104.1| Substrate-binding region of ABC-type glycine betaine transport
system [Frankia sp. EUN1f]
gi|288347824|gb|EFC82102.1| Substrate-binding region of ABC-type glycine betaine transport
system [Frankia sp. EUN1f]
Length = 313
Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 37/279 (13%), Positives = 78/279 (27%), Gaps = 36/279 (12%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP-VTFRSLKNKGIDIFMGYWYP 85
+ AD G+T+ M +L + GY+ L+ +L++ ID Y
Sbjct: 39 SLTVADAGFTESTILADMYGELLHQA-GYQVERTSLSTTEDGQSALESGEIDAMPQYVAT 97
Query: 86 SLE-----------------------KFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
+ + ++ + AV+
Sbjct: 98 YANLLSSQGNGGDLQPDTASDLDAALARLRTLAAARGLSVLEPADAVDQNAFAVSRSFAE 157
Query: 123 LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
G E N+ + ++ ++E Q
Sbjct: 158 EHNLKTLSDLGASGLAVELAAGAE---CVNRPFCAPGLEKVYGIEITGILETGVATR--Q 212
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ R++ + L +D + L +++ ++ +V S L P I+
Sbjct: 213 TKAAVRDDEAQLGLVLTTDATVTDYGLVVLTDDKKL--QNADNLVPIVNSASL--TPQIT 268
Query: 243 RLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
L + + A E+ K + +Q + V R L
Sbjct: 269 SALNALAPVLTTADLAELNKKVDAEQQKTEDVARDYLSD 307
>gi|316934793|ref|YP_004109775.1| Substrate-binding region of ABC-type glycine betaine transporter
[Rhodopseudomonas palustris DX-1]
gi|315602507|gb|ADU45042.1| Substrate-binding region of ABC-type glycine betaine transport
system [Rhodopseudomonas palustris DX-1]
Length = 515
Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 28/287 (9%), Positives = 71/287 (24%), Gaps = 33/287 (11%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP 65
V + + T A T +T+ A+ L+ T L
Sbjct: 237 IVAIVIATLLPGVAAR----TSYVIGAKTFTEQYVLAALLQQRLDASGLAATTRAGLGSG 292
Query: 66 VTFRSLKNKGIDIFMGYWYPSLE---------------KFIAPYLEEGSIKLVAENLQGA 110
V + +LK ID ++ Y + L + + L+ E
Sbjct: 293 VIYDALKGGDIDAYVDYSGTLWANQFKHPGIAARDEVLADLKTDLAKDGVTLLGELGFAN 352
Query: 111 KYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
Y L + + + IA + ++ + + + K R
Sbjct: 353 AYALVMPRAKAEP--LNIRSIADLAARAPQMTIAGDYEFFSRPEWANLRSAYRLAFKTER 410
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
++ + + + + + + ++ L ++ ++
Sbjct: 411 QMQPDF------MYGAVASGDVDLIAGYTSDGLIAKYDLVVLDDPKQA--IPPYDAVLLI 462
Query: 231 RSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
+ L + + + + + V R
Sbjct: 463 APQRAGDA-KLRATLTPLLGRIDIDAMRAANLQVGSVG-TPDSVARA 507
>gi|298245374|ref|ZP_06969180.1| Substrate-binding region of ABC-type glycine betaine transport
system [Ktedonobacter racemifer DSM 44963]
gi|297552855|gb|EFH86720.1| Substrate-binding region of ABC-type glycine betaine transport
system [Ktedonobacter racemifer DSM 44963]
Length = 317
Score = 80.3 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 37/281 (13%), Positives = 85/281 (30%), Gaps = 36/281 (12%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGIDIFMGY 82
+ + T M +++L + GYK K + F+++ + IDI+ +
Sbjct: 43 KGNLVVGGKLDVESQLLTKMYTLLL-QKAGYKVTEKPALGNSNIVFQAISSGSIDIYPEF 101
Query: 83 WYPSLEKFIAPYLEE---------------GSIKLVAENLQGAKYMLAVNDVGFALGIKS 127
L K P + + + Y L + +
Sbjct: 102 TATGLNKLQVPTTYDPQKDYLAVKDGFDKNYKLTWLDAAPLNDGYALCTSKETSQKLGIT 161
Query: 128 YQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQ 187
K K + G + + K F+ +++ ++
Sbjct: 162 SISDVKA-KASQLALTSPSDGVSFVDG---LQKVYGLTTKSFK---STQTVDYALGFDAV 214
Query: 188 RNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKN 247
+++ + + + +L + +GF + VVR+D K P+I+ +L
Sbjct: 215 KSDKAQITVCYGTDATVPQGGFVFLKD--DKNGFPAFNPAPVVRNDIAQKYPDIASVLNP 272
Query: 248 I--KFSVALENEMMKLILNNKQDRQF-------VGRTMLRT 279
+ K + + ++ + K D V L+
Sbjct: 273 LAPKLTTDVSIQLQTQVAQKKSDGASVSRAVTLVATDFLKQ 313
>gi|254394036|ref|ZP_05009119.1| ABC transporter substrate-binding protein [Streptomyces
clavuligerus ATCC 27064]
gi|294816254|ref|ZP_06774897.1| ABC transporter substrate-binding protein [Streptomyces
clavuligerus ATCC 27064]
gi|326444584|ref|ZP_08219318.1| ABC transporter substrate-binding protein [Streptomyces
clavuligerus ATCC 27064]
gi|197707606|gb|EDY53418.1| ABC transporter substrate-binding protein [Streptomyces
clavuligerus ATCC 27064]
gi|294328853|gb|EFG10496.1| ABC transporter substrate-binding protein [Streptomyces
clavuligerus ATCC 27064]
Length = 345
Score = 79.5 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 26/292 (8%), Positives = 72/292 (24%), Gaps = 37/292 (12%)
Query: 4 ILAVCLFLTTFSISYA-----------RDADSCTPVRFADTGWTDIAATTAMTSVIL-EE 51
+L + S + +T+ + + +L E
Sbjct: 46 LLGAASVPALAACGGGITSLDGGGDLSGGGSSADGITIGTANFTENQILGHLYAAVLREA 105
Query: 52 ILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEG------------- 98
+ + + + + F +++ ID+ Y L
Sbjct: 106 GVKVRVRANIGSREILFPAVRGGQIDLLPEYQGALLHHLDTKAGATEEGEMQNRIAMALP 165
Query: 99 -SIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILD 157
++++ L AV A I + ++
Sbjct: 166 AGLQILPYGLAENSDAFAVTRETAARYGLRTLADLARHN-GRLTIGALPEVKTRVVGVVG 224
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
+ + K F+ +++S ++ + V + + L
Sbjct: 225 LKDVYGVEFKEFKSLDSSGP----LVKGALKKGDVDVANVFTTDADIAAEGWVLLGDPRN 280
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQ 267
+ V ++ D + + L + + E+ +L+ K+
Sbjct: 281 L--IPGQHVVPLIADRRADS--RVRKALAGLGAVLTTEALTELNRLVDKEKE 328
>gi|330818225|ref|YP_004361930.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia gladioli BSR3]
gi|327370618|gb|AEA61974.1| Substrate-binding region of ABC-type glycine betaine transport
system [Burkholderia gladioli BSR3]
Length = 310
Score = 79.5 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 34/277 (12%), Positives = 76/277 (27%), Gaps = 28/277 (10%)
Query: 28 VRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGIDIFMGYWYP 85
+ + T+ + + + L+ G I L P+ ++L IDI+ Y
Sbjct: 32 IVVSSKIDTEGSLLGQLIAQSLKAH-GLAVTDKISLGTTPIVRKALTTGEIDIYPEYTGN 90
Query: 86 S------------------LEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG-IK 126
+ + + + + +A+ ++
Sbjct: 91 AAFFFNKADDPLWRDAARGYAAARQLDYQANHLVWLTPAPASNTWGVALLAGLAKANQLR 150
Query: 127 SYQDIAKYKKE-LGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
S+ D K+ K+ + F LK +L+ S + I+
Sbjct: 151 SFSDFGKWVTAGGKIKLVASAEFVNSASALPAFEKTYGFRLKPDQLLVLSGGDTAVTIKT 210
Query: 186 DQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
+ + + + L ++ + V+R L P I +
Sbjct: 211 AASQTDGVNAAMVYSTDGAIESAGLVVLDDDRKV--QPVYAPTPVIREAVLKAHPEIDGI 268
Query: 245 LKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
LK + + + I N + V L+
Sbjct: 269 LKPVFASLDLKTLQTLNNRIQLNGEPAAGVAAQYLKA 305
>gi|333001265|gb|EGK20833.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Shigella flexneri VA-6]
Length = 261
Score = 79.5 bits (194), Expect = 6e-13, Method: Composition-based stats.
Identities = 31/258 (12%), Positives = 72/258 (27%), Gaps = 28/258 (10%)
Query: 47 VILEEILGYKT--NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS----- 99
+LE G T ++L PV ++ + +DI+ Y F
Sbjct: 2 QVLESH-GVPTVNKVQLGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDAAWKNAGQG 60
Query: 100 -------------IKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYG 144
+ + + +AV + + K+
Sbjct: 61 YEKVKKLDAEHNKLIWLTPAPANNTWTIAVRQDVAEKNKLTSLADLSRYLQEGGTFKLAA 120
Query: 145 IEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPI 203
E + F L +L+ + + I+ + + +++
Sbjct: 121 SAEFIERADALPAFEKAYGFKLGQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDAP 180
Query: 204 NSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKL 261
+ L + L + + + VVR L + P +++ L+ + ++
Sbjct: 181 VAALGLQTLSDPQGV--QPIYAPAPVVRESVLKEYPQMAQWLQPVFASLDAKTLQQLNAS 238
Query: 262 ILNNKQDRQFVGRTMLRT 279
I D + V L+
Sbjct: 239 IAVEGLDAKKVAADYLKQ 256
>gi|325277753|ref|ZP_08143316.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas sp. TJI-51]
gi|324097114|gb|EGB95397.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas sp. TJI-51]
Length = 133
Score = 79.1 bits (193), Expect = 8e-13, Method: Composition-based stats.
Identities = 20/140 (14%), Positives = 46/140 (32%), Gaps = 24/140 (17%)
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGE-EISGFG----------------EASVY 227
R P +F W P P+ + L + + + A +
Sbjct: 1 SAIRRGQPVLFYYWNPTPLMGRYKLVRLQEPPFDANAWATLTDASNPNPQGSQSLPAKLS 60
Query: 228 TVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
V + D P++ R+ + + + N+ + + + + LR + ++ K W
Sbjct: 61 IGVSKAFRDGYPDLVRVFEQVDLPIQRLNQALANMSEKRTPPREAALAFLRDNREVWKAW 120
Query: 288 LIGVTTFDGQDPSRQLERFM 307
L D + ++E +
Sbjct: 121 LP-------ADIAAKVEASL 133
>gi|86750448|ref|YP_486944.1| substrate-binding region of ABC-type glycine betaine transport
system [Rhodopseudomonas palustris HaA2]
gi|86573476|gb|ABD08033.1| Substrate-binding region of ABC-type glycine betaine/choline
transport system [Rhodopseudomonas palustris HaA2]
Length = 519
Score = 78.7 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 24/266 (9%), Positives = 64/266 (24%), Gaps = 32/266 (12%)
Query: 30 FADTGWTDIAATTAMTSVILEEILGYKTNIKLL-AVPVTFRSLKNKGIDIFMGYWYPSLE 88
+T+ A+ L + G + V + +L++ ID ++ Y
Sbjct: 258 VGAKTFTEQYVLAALLQQRL-DAAGLSATTRAGLGSSVIYDALRSGDIDAYVDYSGTLWA 316
Query: 89 ---------------KFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAK 133
+ L + + L+ + Y LA+ + IA
Sbjct: 317 NQFKHPGIAARDQVLADLKQDLAKDGVTLLGDLGFANAYALAMPRARAEA--LGIRSIAD 374
Query: 134 YKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPA 193
A + ++ + K R ++ +
Sbjct: 375 LAARAPAMTIAGDYEFFSRPEWANLRRTYGLTFKAERQMQPDF------MYAAVATGEVD 428
Query: 194 VFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFS 251
+ + + + ++ L ++ ++ + L + +
Sbjct: 429 LIAGYTSDGLIAKYDLVVLDDPKQA--IPPYDAVLLISPKRAGDA-KLRDALTPLVGRID 485
Query: 252 VALENEMMKLILNNKQD--RQFVGRT 275
+ + D V R
Sbjct: 486 IGAMRAANLRAASGGGDGTPDAVARA 511
>gi|222084770|ref|YP_002543299.1| glycine betaine ABC transporter [Agrobacterium radiobacter K84]
gi|221722218|gb|ACM25374.1| glycine betaine ABC transporter [Agrobacterium radiobacter K84]
Length = 302
Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 39/278 (14%), Positives = 78/278 (28%), Gaps = 28/278 (10%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPVTFRSLKNKGIDIFMGYWY 84
V + T+ + L G K I L PV +++ IDI+ Y
Sbjct: 23 DVVVSSKIDTEGTLLGNIILAALNAN-GIKAQDRIALGTTPVVRKAITAGEIDIYAEYTG 81
Query: 85 PSLEKFIAPYLEEGS------------------IKLVAENLQGAKYMLAVNDVGFAL-GI 125
+ F I + + + +AV + +
Sbjct: 82 NAGFFFNKADDAAWKDLQKGYDLAKKLDYDANKIVWLTPSPANNTWAIAVRNDVAGPAKL 141
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINN-NKFSLKGFRLIEASELASFSQIR 184
K+ D K+ G + L F +K + + S + + I+
Sbjct: 142 KTMSDFGKWVAGGGPVKLAASSEFVNSPAALPAFQTTYSFQIKPDQEVVLSGGDTAATIK 201
Query: 185 RDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
N + + + L + S + +VR L P I
Sbjct: 202 AAADQTNGVNTAMVYGTDGAIEAAELTVLED--DKSVQPVYAPTPIVREAVLKANPKIEE 259
Query: 244 LLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+L I + + ++ I + + + V + L+
Sbjct: 260 VLAPIFKGLTADVLRKLNGRIQVDGEPAKAVAESYLKD 297
>gi|326778529|ref|ZP_08237794.1| ABC-type glycine betaine transport, periplasmic subunit
[Streptomyces cf. griseus XylebKG-1]
gi|326658862|gb|EGE43708.1| ABC-type glycine betaine transport, periplasmic subunit
[Streptomyces cf. griseus XylebKG-1]
Length = 322
Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 30/321 (9%), Positives = 78/321 (24%), Gaps = 56/321 (17%)
Query: 3 KILAVCLFLTTFSISYARDADSC----------------TPVRFADTGWTDIAATTAMTS 46
+I + + + S A + +T+ + +
Sbjct: 6 RIAGAVIGVVALAGSLAACGGDSLEQEKGSGSSGGGSEKGSLVVGSASFTESKVLAELYA 65
Query: 47 VILEEILGYKTNIKLLAVPVTFR-SLKNKGIDIFMGY----------------------- 82
IL + GY T+I + + SL+ ID+ Y
Sbjct: 66 QILGDA-GYDTSITTVKNRELYEPSLEKGEIDVVPEYAATITEFLNAKVNGAEKAQSTPL 124
Query: 83 ---WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
+ + +K++ + AV+ + ++ K
Sbjct: 125 ASPDADATVAALEKLAGPLGLKVLPAGKAVDQNAFAVSKEFAEKNKLT--TLSDLGKSKL 182
Query: 140 AKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWE 199
E + + Q ++ R+ + L+
Sbjct: 183 EVKIAAGDECEVRPFCAPGLKKTYGIDVTG---IDPKGVGTPQSKQAVRDGKVQLVLTTT 239
Query: 200 PHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENE 257
+ + ++ + +V V+ + I+ L + + E
Sbjct: 240 TDAVL---DGLVFLEDDKKLQNAD-NVLPVLNAKDAGSS-EIAAALGKLTDALTTEDLAE 294
Query: 258 MMKLILNNKQDRQFVGRTMLR 278
+ + + + V + L
Sbjct: 295 LNRKVDAERAKPADVAKEYLE 315
>gi|183393110|gb|ACC61717.1| amino acid ABC transporter amino acid-binding protein
[Lactobacillus rhamnosus HN001]
Length = 241
Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/216 (12%), Positives = 53/216 (24%), Gaps = 21/216 (9%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGIDIF 79
+ + VR A T+ + + ++ LGYKT + + V +++ DI
Sbjct: 30 SGNDGTVRIASQTSTESQIMANIIAELINHELGYKTTLVNNLGSGTVVHQAMIRNDADIS 89
Query: 80 MGYWY---------------PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
+ PS I + G A
Sbjct: 90 ATRYTGTDITGTLGMNPVKSPSKAMTIVKREFKKRYDQTWYPSYGFSDTYAFMVTQEEAK 149
Query: 125 IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
+ +I+ KK G++ + + R+ +
Sbjct: 150 KDNLNNISDLKKVASQYNAGVDSSWMNRKGDGYSDFTKAYGFDFKRVYP----MQIGLVY 205
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISG 220
N L + N+ L ++
Sbjct: 206 DAVEANRMQTVLGYSTDGRIRSYNLKILKDDKKFFP 241
>gi|320010046|gb|ADW04896.1| Substrate-binding region of ABC-type glycine betaine transport
system [Streptomyces flavogriseus ATCC 33331]
Length = 326
Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/284 (9%), Positives = 74/284 (26%), Gaps = 38/284 (13%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFR-SLKNKGIDIFMGY 82
+ G+T+ + + +L + GY ++ + + SL+ ID+ Y
Sbjct: 45 KKGSLVVGAAGFTESKVLAELYAQVLGDA-GYDASVTTVKNRELYEPSLEKGEIDVVPEY 103
Query: 83 WYP--------------------------SLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ + +K++ + AV
Sbjct: 104 AATLAEFLNAKVNGADAAAKKPVASGDVAATVTALEKLAGPLGLKVLPAGEAVDQNAFAV 163
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ S + ++ + E + +
Sbjct: 164 SKEFADKN--SLKTLSDLGESKIKVKIAAGDECEVRPFCAPGLKKTYGIDVTG---IDPK 218
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
Q ++ ++ + L+ + + +L +++ +V V+ +
Sbjct: 219 GVGTPQSKQAVKDGKDQLVLTTTTDAVLDSYGLVFLEDDKKL--QNADNVLPVLNAK-DA 275
Query: 237 KCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLR 278
P I+ L + S E+ + + + LR
Sbjct: 276 GAPEIAEALGKLTEVLSTEDLAELNRKVDAERAKPADAAGDYLR 319
>gi|115524212|ref|YP_781123.1| substrate-binding region of ABC-type glycine betaine transport
system [Rhodopseudomonas palustris BisA53]
gi|115518159|gb|ABJ06143.1| Substrate-binding region of ABC-type glycine betaine transport
system [Rhodopseudomonas palustris BisA53]
Length = 516
Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/292 (9%), Positives = 74/292 (25%), Gaps = 34/292 (11%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL- 62
+L V + A A + + A+ + LE G +
Sbjct: 234 LLGVVALVLATLTPIASSARQG--YVVGAKTFAEQYLLAALIAQRLEAA-GLPAATREGL 290
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLE---------------KFIAPYLEEGSIKLVAENL 107
V F +L+ ID+++ Y + L++ ++ L+ +
Sbjct: 291 GSSVIFGALQANEIDVYVDYSGTLWANQLRRTDQPSRENLLAELKAELQKSNVTLLGQLG 350
Query: 108 QGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
Y L ++ + IA + + + +
Sbjct: 351 FENAYALMLSRQRAQA--LGIRSIADLAAHSASLSIAGDYEFFARPEWAALRQAYGLGFR 408
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
R ++ + + V + ++ L +
Sbjct: 409 EQRTLQPDF------MYAAVTSGEVDVIAGYTSDGRIDQYDLVVLDDPRRV--IPPYDAV 460
Query: 228 TVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
++ + + L + + +A E + ++ Q + V L
Sbjct: 461 LLLAPQRQNDT-QLRAALAPLLGRIDLAAMREANRR-ADSGQSPKAVAV-WL 509
>gi|289672074|ref|ZP_06492964.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae pv. syringae FF5]
Length = 108
Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 48/117 (41%), Gaps = 9/117 (7%)
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKF 250
P + W P P+ +++ L + + V + D+ P + +L+ +
Sbjct: 1 EPILTYYWSPTPLMGQVDLVRLEE--KAGVNKTIDIKVGVSKVFHDEAPELVAILEKVNL 58
Query: 251 SVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ L N+ + + + + + + L+ HP++ W+ +D +++++ +
Sbjct: 59 PIDLLNQNLGRMAKERIESPKLAKIFLKEHPEVWHKWVS-------EDAAKKVDASL 108
>gi|239980342|ref|ZP_04702866.1| putative ABC transporter substrate-binding protein [Streptomyces
albus J1074]
gi|291452205|ref|ZP_06591595.1| amino acid ABC transporter amino acid-binding protein [Streptomyces
albus J1074]
gi|291355154|gb|EFE82056.1| amino acid ABC transporter amino acid-binding protein [Streptomyces
albus J1074]
Length = 329
Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 31/279 (11%), Positives = 79/279 (28%), Gaps = 35/279 (12%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTF-RSLKNKGIDIFMGY--- 82
+ +T+ + + IL + GY T++K + + + L+ IDI Y
Sbjct: 54 SLVVGAARFTEAKVLGELYAQILRDA-GYDTDVKTVQNREVYAKELEKGAIDIVPEYAAT 112
Query: 83 --------------------WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
+ + + E + ++A + AV+
Sbjct: 113 LTEFFNLQKNGPDAEPVASSDADATVAELKKFAEPKGLTVLAHGEAVDQNAFAVSKEFAD 172
Query: 123 LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
S + ++ K E + + Q
Sbjct: 173 KH--SLKTLSDLGKSGEKVKIAAGDECETRPFCAPGLKKTYGIDVTG---IDPKGVGTPQ 227
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
++ +N + L+ ++ ++ L +++ ++ VV + I+
Sbjct: 228 AKQAVKNGTDQLVLTTTTDATLANYDLVLLEDDKKL--QNADNILPVVHTKDAGD-KEIA 284
Query: 243 RLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+L + + E+ + + +Q V L
Sbjct: 285 DILGKLTKTLTTEDLAELNRQVDEERQKEADVAGAYLEE 323
>gi|329113439|ref|ZP_08242220.1| Hypothetical protein APO_0208 [Acetobacter pomorum DM001]
gi|326697264|gb|EGE48924.1| Hypothetical protein APO_0208 [Acetobacter pomorum DM001]
Length = 249
Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 35/251 (13%), Positives = 75/251 (29%), Gaps = 13/251 (5%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPS 86
+ A T AT A +LE + +I V LK +D ++ W P
Sbjct: 3 SLTLAYPETTVHEATAAAIIRVLEAN-DVEPDIVTGPKDVLTDMLKKGEVDFYVSAWLPD 61
Query: 87 LEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE 146
+ + I + + A + + + S D+A+ EL I E
Sbjct: 62 EDA----GMLAPGILPLGNLFRPAAHCCISAEDTP---LTSLDDVAQAGPELSRTIITPE 114
Query: 147 PGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSD 206
+ + ++ GF L + + +++ + + ++P +
Sbjct: 115 SLQKHME---KVLQQYGLDTAGFSLKVLPDEEALAELNAALKREELVLMPLFQPCFLFHI 171
Query: 207 LNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKF-SVALENEMMKLILNN 265
L + G GE ++R++ D+ + S + + M +
Sbjct: 172 GGFRILNDPKNALG-GEQDARILIRTEIKDEMEQDLLDELDELMLSAKIISAMDYAMRVE 230
Query: 266 KQDRQFVGRTM 276
Sbjct: 231 GMTADEAAEAW 241
>gi|258542273|ref|YP_003187706.1| glycine/betaine ABC transporter periplasmic protein [Acetobacter
pasteurianus IFO 3283-01]
gi|256633351|dbj|BAH99326.1| glycine/betaine transporter substrate-binding periplasmic protein
[Acetobacter pasteurianus IFO 3283-01]
gi|256636410|dbj|BAI02379.1| glycine/betaine transporter substrate-binding periplasmic protein
[Acetobacter pasteurianus IFO 3283-03]
gi|256639463|dbj|BAI05425.1| glycine/betaine transporter substrate-binding periplasmic protein
[Acetobacter pasteurianus IFO 3283-07]
gi|256642519|dbj|BAI08474.1| glycine/betaine transporter substrate-binding periplasmic protein
[Acetobacter pasteurianus IFO 3283-22]
gi|256645574|dbj|BAI11522.1| glycine/betaine transporter substrate-binding periplasmic protein
[Acetobacter pasteurianus IFO 3283-26]
gi|256648627|dbj|BAI14568.1| glycine/betaine transporter substrate-binding periplasmic protein
[Acetobacter pasteurianus IFO 3283-32]
gi|256651680|dbj|BAI17614.1| glycine/betaine transporter substrate-binding periplasmic protein
[Acetobacter pasteurianus IFO 3283-01-42C]
gi|256654671|dbj|BAI20598.1| glycine/betaine transporter substrate-binding periplasmic protein
[Acetobacter pasteurianus IFO 3283-12]
Length = 249
Score = 77.2 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 34/251 (13%), Positives = 75/251 (29%), Gaps = 13/251 (5%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPS 86
+ A T AT A +LE + +I V LK +D ++ W P
Sbjct: 3 SLTLAYPETTVHEATAAAIIRVLEAN-DVEPDIVTGPKDVLTDMLKKGEVDFYVSAWLPD 61
Query: 87 LEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE 146
+ + I + + A + + + S D+A+ EL I
Sbjct: 62 EDA----GMLAPGILPLGNLFRPAAHCCISAEDTP---LTSLDDVAQAGPELSRTIIT-- 112
Query: 147 PGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSD 206
+ + +++ GF L + + +++ + + ++P +
Sbjct: 113 -PASLRKHMENVLQQYGLDTAGFSLKVLPDEEALAELNAALKREELVLMPLFQPCFLFHI 171
Query: 207 LNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKF-SVALENEMMKLILNN 265
L + G GE ++R++ D+ + S + + M +
Sbjct: 172 GGFRILNDPKNALG-GEQDARILIRAETKDEMEQDLLDELDELMLSAKIISAMDYAMRVE 230
Query: 266 KQDRQFVGRTM 276
Sbjct: 231 GMTADEAAEAW 241
>gi|227494602|ref|ZP_03924918.1| proline/glycine/betaine/choline ABC superfamily ATP binding
cassette transporter, binding protein [Actinomyces
coleocanis DSM 15436]
gi|226832336|gb|EEH64719.1| proline/glycine/betaine/choline ABC superfamily ATP binding
cassette transporter, binding protein [Actinomyces
coleocanis DSM 15436]
Length = 307
Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 24/308 (7%), Positives = 74/308 (24%), Gaps = 37/308 (12%)
Query: 1 MYKILAVCLFLTTFSISYARDA------------DSCTPVRFADTGWTDIAATTAMTSVI 48
M + + + T + + D P+ + + + + +
Sbjct: 8 MLGVSGLVILATGLAACGNSNPLADPNKKKPMADDKNRPLVIGSSKYYSSGIIAEIFAQV 67
Query: 49 LEEILGYKTNIKL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAEN 106
LE G + + A V + ++ ID+ Y L+ + S + +
Sbjct: 68 LESK-GIAVDRQFNIGARAVFLKEFEDGKIDLMPEYAGNLLQ-YYKADDPAVSTEEIKAA 125
Query: 107 LQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL--------------GAKIYGIEPGNEGN 152
L GA + + ++ G +
Sbjct: 126 LPGALPKGIRVLDLAEATDQDSYCVTDMFSINNGIGSLEDLAKLGRPIRLAGNSELADRP 185
Query: 153 QRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYL 212
+ L+ + + + ++ + + P + L
Sbjct: 186 YGPKGLKEKYGLD---VELVPVEDGGGPLTV-KALKDGTVDIANIFSADPQIDKEGLVPL 241
Query: 213 PGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
++ + + ++ K A + + ++Q + +
Sbjct: 242 MDP--KHLIVTQNITAIASDRVPAEVGEAVNMVLA-KLDQAAILGINSKSVIDQQAAEQI 298
Query: 273 GRTMLRTH 280
+ +
Sbjct: 299 AADWIANN 306
>gi|325068277|ref|ZP_08126950.1| ABC transporter glycine betaine [Actinomyces oris K20]
Length = 329
Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 28/303 (9%), Positives = 62/303 (20%), Gaps = 36/303 (11%)
Query: 4 ILAVCLFLTT--FSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+LA+ T F++ A S P+ + + + ++E G +
Sbjct: 28 LLALSACSDTDPFAVDQASGGYSGGPIIIGSQQYYSNEIIAELYAQMME-KTGLTVTRQY 86
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAE-------------- 105
V L+ I + Y LE +
Sbjct: 87 QIGQREVYLPELEAGKIHVIPEYGGNLLEYYSKTSASGSPTATATPSRAAGDTASIQDTL 146
Query: 106 -----------NLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQR 154
N A ++ S I
Sbjct: 147 LRTLPHSLTVLNPAEATDQDSLTVTKATAQAHSLTSIGDLASLGRPITIAANSEFTTRPY 206
Query: 155 ILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPG 214
+ +E S + + V + P ++ L
Sbjct: 207 GPKGLKAVYGVDASVTPVEDSGGPLT---VKALTDGTVDVADIYSSDPAIGAKDLVILSD 263
Query: 215 GEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGR 274
+ +V +V + + + + + + K + +
Sbjct: 264 PQ--MLILPQNVTPLVSASLPAIAATAINRVSAL-LTPDELRSLNQRSTGEKLSSKTIAT 320
Query: 275 TML 277
L
Sbjct: 321 DWL 323
>gi|50954891|ref|YP_062179.1| ABC-type glycine betaine transport, substrate-binding protein
[Leifsonia xyli subsp. xyli str. CTCB07]
gi|31616620|gb|AAP55493.1| PROX-like protein [Leifsonia xyli subsp. xyli]
gi|50951373|gb|AAT89074.1| ABC-type glycine betaine transport, substrate-binding protein
[Leifsonia xyli subsp. xyli str. CTCB07]
Length = 317
Score = 76.8 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 31/272 (11%), Positives = 69/272 (25%), Gaps = 27/272 (9%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGIDIFMGYWY 84
V + + + L G K K V ++L++ ID+ Y
Sbjct: 52 TVTIGSAAFGESEILMRIYGQALAAN-GVKVAYKPSIGQRDVYLKALQDGSIDLLPEYSG 110
Query: 85 PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIY- 143
L+ + S + A D A SY ++ + G
Sbjct: 111 NLLQFYDKNSTATSSDDVYAALKDAVPEGFEALDQAKAQDADSYNVTKEFSDKYGVTSLD 170
Query: 144 ------------GIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI 191
IL + + + + ++ + + +N
Sbjct: 171 DLKKVTEPLAVGANPEFETRPYGILGLKSAYGVTATLKPISDSGGPLTVA----ALKNGD 226
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK-- 249
+ + P D + L + + ++ ++ + + +L +
Sbjct: 227 VQLANIYTATPAIKDNDFVTLKDPKNL--IAAQNIVPLISAK--KASATVKEVLNKVSAE 282
Query: 250 FSVALENEMMKLIL-NNKQDRQFVGRTMLRTH 280
M NK + V + L H
Sbjct: 283 LITDDLIAMNGENQGTNKTQPEAVAKKWLSEH 314
>gi|255018549|ref|ZP_05290675.1| hypothetical protein LmonF_14071 [Listeria monocytogenes FSL
F2-515]
Length = 111
Score = 76.4 bits (186), Expect = 5e-12, Method: Composition-based stats.
Identities = 14/106 (13%), Positives = 31/106 (29%), Gaps = 4/106 (3%)
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
I +NN V L + N+ L ++ + + L
Sbjct: 1 PMQIGLIYTALKNNQMDVALGYSTDGRIPTYNLKLLKDDKKFF--PPYDASALATDEILK 58
Query: 237 KCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
K P + + +K S ++ ++ V + L+ +
Sbjct: 59 KHPELKTTINKLKGKISTEEMQKLNYEADGKLKEPSIVAQEFLQKN 104
>gi|167738552|ref|ZP_02411326.1| amine ABC transporter, periplasmic amine-binding protein
[Burkholderia pseudomallei 14]
Length = 287
Score = 76.4 bits (186), Expect = 5e-12, Method: Composition-based stats.
Identities = 37/257 (14%), Positives = 76/257 (29%), Gaps = 28/257 (10%)
Query: 28 VRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGIDIFMGYWYP 85
V A T+ + S +L+ G I L A P+ R+L IDI+ Y
Sbjct: 34 VTVASKIDTEGNLLGNVISQVLKAH-GIAVVDKIGLGATPIVRRALTTGEIDIYPEYTGN 92
Query: 86 SLEKFIAPYLEEGS------------------IKLVAENLQGAKYMLAVNDVGFAL-GIK 126
+ F I +A + +AV + +K
Sbjct: 93 AAFFFNKADDPAWKNAAQGYALARQLDYAANRIVWLAPAPANNTWGVAVLNSIAQARHLK 152
Query: 127 SYQDIAKYKKE-LGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
++ D K+ K+ + F LK +++ S + + I+
Sbjct: 153 TFSDFGKWVAAGGKVKLAASAEFVNSASALPSFEKAYGFKLKPEQMLVLSGGDTAATIKA 212
Query: 186 DQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
+ + + + + + L + + ++R L+ P I+
Sbjct: 213 AAQQTDGVNAAMVYGTDGGIAATGLAVLDD--DKHVQPVYAPTPIIREAVLNAHPQIADY 270
Query: 245 LKNI--KFSVALENEMM 259
LK + + +
Sbjct: 271 LKPVFASLDLKTLQALN 287
>gi|306842497|ref|ZP_07475148.1| Substrate-binding region of ABC-type glycine betaine transport
system [Brucella sp. BO2]
gi|306287353|gb|EFM58833.1| Substrate-binding region of ABC-type glycine betaine transport
system [Brucella sp. BO2]
Length = 240
Score = 76.0 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 32/238 (13%), Positives = 66/238 (27%), Gaps = 25/238 (10%)
Query: 66 VTFRSLKNKGIDIFMGYWYPS------------------LEKFIAPYLEEGSIKLVAENL 107
+ +++ IDI+ Y + E + I + +
Sbjct: 1 MVRKAITAGEIDIYPEYTGNAAFFFNKADDPLWKDPAKAYETAKKLDYDANKIVWLTPSP 60
Query: 108 QGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGN--QRILDMINNNKFS 165
+ +AV S G K+ N + F+
Sbjct: 61 ANNTWGIAVRKDVADENKLSSLSDFGKYIAGGGKVVLAASSEFVNSAAALPAFQTAYGFT 120
Query: 166 LKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEA 224
LK +LI S + + I N + + + + L +
Sbjct: 121 LKPDQLITLSGGDTAATIAAAANQTNGANAAMVYGTDGGIAPSGLVVLKD--DKHVQPVY 178
Query: 225 SVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
++R + L K P I LLK + K + ++ + + + V L+ +
Sbjct: 179 QPAPIIREEVLKKNPKIEELLKPVFEKLDLTTLQDLNGRVQLGGEPAKAVAEDFLKKN 236
>gi|323231218|gb|EGA15333.1| amine ABC transporter, periplasmic amine-binding protein
[Salmonella enterica subsp. enterica serovar Montevideo
str. MB111609-0052]
Length = 201
Score = 76.0 bits (185), Expect = 7e-12, Method: Composition-based stats.
Identities = 26/199 (13%), Positives = 57/199 (28%), Gaps = 12/199 (6%)
Query: 96 EEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQ 153
E+ + + + +AV S + K+ E
Sbjct: 10 EQNKLVWLTPAPANNTWTIAVRQDIAEKNKLSSLADLSRYLKEGGTFKLAASAEFIERAD 69
Query: 154 RILDMINNNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYL 212
+ F+L +L+ + + I+ + + +++ + L + L
Sbjct: 70 ALPAFEKAYDFTLNQNQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTL 129
Query: 213 PGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQ 270
+ + + VVR L P I+ L+ + ++ I D +
Sbjct: 130 SDPKGV--QPIYAPAPVVRESVLQAYPQIADWLQPVFASLDEKTLQQLNARIAVEGLDAK 187
Query: 271 FVGRTMLRTHPDLLKNWLI 289
V LR K W+
Sbjct: 188 KVAADYLRQ-----KGWVK 201
>gi|301381133|ref|ZP_07229551.1| glycine betaine transporter periplasmic subunit [Pseudomonas
syringae pv. tomato Max13]
Length = 197
Score = 76.0 bits (185), Expect = 7e-12, Method: Composition-based stats.
Identities = 26/199 (13%), Positives = 51/199 (25%), Gaps = 12/199 (6%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLL 62
+ + L L+ S A++ + + + L+E LGYK K
Sbjct: 1 MTVLALALSPLMASAAQEPGKGVSITPIFPTIAEERFRGEIAMAGLKE-LGYKVEQPKET 59
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
P +L D + W F A + ++ V + G ++
Sbjct: 60 DYPAMMLALSYGDADFTVHAWEQLHASFYAKAGGDDTMVKVGAIMPGVLQGYMIDKKTAD 119
Query: 123 LGIKS---------YQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+ + + A + G PG + +
Sbjct: 120 QYKITSVEDLKKPEIAKLFDSNDDGKADMTGCNPGWGCEVLVEHHMKAYGLEKTVTD-NR 178
Query: 174 ASELASFSQIRRDQRNNIP 192
S A + + P
Sbjct: 179 GSYFALMADTIARYQQGKP 197
>gi|329914088|ref|ZP_08276029.1| L-proline glycine betaine binding ABC transporter protein ProX /
Osmotic adaptation [Oxalobacteraceae bacterium IMCC9480]
gi|327545233|gb|EGF30496.1| L-proline glycine betaine binding ABC transporter protein ProX /
Osmotic adaptation [Oxalobacteraceae bacterium IMCC9480]
Length = 433
Score = 75.6 bits (184), Expect = 9e-12, Method: Composition-based stats.
Identities = 25/216 (11%), Positives = 52/216 (24%), Gaps = 10/216 (4%)
Query: 67 TFRSLKNKGIDIFMGYWYPSLEKFIAPYLE---EGSIKLVAENLQGAKYMLAVNDVGFAL 123
F +LK ID++ Y + + E +A G L ++
Sbjct: 1 MFNALKTGSIDLYPEYLGTINSEILKHDKPSSLEQIRAELAPLGLGVGVPLGFDNTYALA 60
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
+ EL A + + L ++ + +RL +
Sbjct: 61 MRGTPDGGPATLAELAALP---QLRLGLSHEFLGRVDGWPGLAQHYRLPQQPTGLDHGIA 117
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
+ + L + L F + R D + P
Sbjct: 118 YEALMAKQVDIIDIYSTDAKIGKLGLRVLKD--NNHFFPSYEAVLLYRLDLPQRFPAAWA 175
Query: 244 LLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ + + M + + Q V +
Sbjct: 176 AIGTLEGRIDNTRMIAMNAAVEIDGQSFAAVATQFV 211
>gi|295835329|ref|ZP_06822262.1| amino acid ABC transporter amino acid-binding protein [Streptomyces
sp. SPB74]
gi|197696400|gb|EDY43333.1| amino acid ABC transporter amino acid-binding protein [Streptomyces
sp. SPB74]
Length = 329
Score = 75.6 bits (184), Expect = 9e-12, Method: Composition-based stats.
Identities = 34/311 (10%), Positives = 87/311 (27%), Gaps = 45/311 (14%)
Query: 5 LAVCLFLTTFSISYA--------RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
L L LT S + + G+T+ M ++L + GY
Sbjct: 26 LVAALLLTACSTGPSLENRNEVTAPPGDSKSLTIGSAGFTESDLLAHMYKLLL-DKAGYY 84
Query: 57 TNIKLLAVPVTFR-SLKNKGIDIFMGYWYP-----------------------SLEKFIA 92
T + ++ + +L++ ID+ Y +
Sbjct: 85 TRLLTVSNRELYEPALESGQIDVVPEYAATFADWLNAKKNGADAKPVGSPDLARTMPRLR 144
Query: 93 PYLEEGSIKLVAENLQGAKYMLAV-NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEG 151
+ ++ + AV G+++ D+ + +L +I +
Sbjct: 145 ALAAARGLDVLDPGRAVDQNAYAVTRAYAREHGLRTLSDLGR--AKLRVRIAAGDECATR 202
Query: 152 NQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHY 211
+ L + +Q ++ ++ + + + +
Sbjct: 203 PYCAPGLRKTYGIDLTTID----PKGLGTTQAKKAVQDGRDQLVATTTTDATLDEFGLVL 258
Query: 212 LPGGEEISGFGEASVYTVVRSDYLDKCPNISRL--LKNIKFSVALENEMMKLILNNKQDR 269
L +++ + VV + L L + + A + + + + ++
Sbjct: 259 LRDDKKL--QNADYLVPVVNRSRAGSRRVATALGRLNKV-LTTADLAGLNRRVDSWRRLP 315
Query: 270 QFVGRTMLRTH 280
+ V R L H
Sbjct: 316 EDVARDYLNRH 326
>gi|326774195|ref|ZP_08233477.1| glycine betaine/choline-binding protein of an ABC-type transport
system [Actinomyces viscosus C505]
gi|326636334|gb|EGE37238.1| glycine betaine/choline-binding protein of an ABC-type transport
system [Actinomyces viscosus C505]
Length = 329
Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/303 (8%), Positives = 63/303 (20%), Gaps = 36/303 (11%)
Query: 4 ILAVCLFLTT--FSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+LA+ T F++ + S P+ + + + ++E G +
Sbjct: 28 LLALSACSDTDPFAVDQSSGGYSGGPIIIGSQQYYSNEIIAELYAQMME-KTGLTVTRQY 86
Query: 62 --LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAE-------------- 105
V L+ I + Y LE +
Sbjct: 87 QIGQREVYLPELEAGKIHVIPEYGGNLLEYYSKTSASGSPTAAATPSRTAGDTASIQDTL 146
Query: 106 -----------NLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQR 154
N A ++ S I +
Sbjct: 147 LRTLPHSLTVLNPAEATDQDSLTVTKATAQAHSLTSIGDLASLGRSVTIAANSEFTTRPY 206
Query: 155 ILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPG 214
+ +E S + + V + P ++ L
Sbjct: 207 GPKGLKAVYGVDASVTPVEDSGGPLT---VKALTDGTVDVADIYSSDPAIGAKDLVILSD 263
Query: 215 GEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGR 274
+ +V +V + + + + + + K + +
Sbjct: 264 PQ--MLILPQNVTPLVSASLPAIAATAINRVSAL-LTPDELRSLNQRSTGEKLSSKTIAT 320
Query: 275 TML 277
L
Sbjct: 321 DWL 323
>gi|261884415|ref|ZP_06008454.1| OpuAC [Campylobacter fetus subsp. venerealis str. Azul-94]
Length = 186
Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
GE ++T+ R + P + L N ++ +M I + + + + +
Sbjct: 8 YGGEEEIHTIGRLGLKEDMPEAHQNLSNFNWTEDDMGAVMIEIK-DGEKPEVAAQNWIDA 66
Query: 280 HPDLLKNWLIGVTTFDG 296
+PD + W GV DG
Sbjct: 67 NPDKVAEWTDGVDKVDG 83
Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 19/104 (18%), Positives = 40/104 (38%), Gaps = 2/104 (1%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYW 83
++ A W A+T + ++LE+ +GY + + F ++ + D + W
Sbjct: 82 DGDKIKLAYVAWDSEIASTNVVKLVLED-MGYDVTMSQVEAGPMFTAIADGSADATLAAW 140
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKS 127
+P A +G + + ++ G K L V I+
Sbjct: 141 FPLTHATYAEKY-DGKFEDLGISMTGVKIGLVVPTYMDIDSIED 183
>gi|222147400|ref|YP_002548357.1| ABC transporter substrate binding protein (proline/glycine/betaine)
[Agrobacterium vitis S4]
gi|221734390|gb|ACM35353.1| ABC transporter substrate binding protein (proline/glycine/betaine)
[Agrobacterium vitis S4]
Length = 304
Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/286 (9%), Positives = 69/286 (24%), Gaps = 31/286 (10%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--LLAVPVTFRSLK 72
+ + + + + + + L G K + + V +L
Sbjct: 29 LAAPPTERSDTKTIIIGSADFPESQLLATLYAKALTAK-GVAVETKLNIGSREVYMPALL 87
Query: 73 NKGIDIFMGYWY--------------PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ ID+ Y P + ++ + +AV
Sbjct: 88 DGSIDLLPEYAGAALSYLDKKATAHTPDDVAAALKAALPKGVSMLTPSAAQDSDGVAVTR 147
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGN-QRILDMINNNKFSLKGFRLIEASEL 177
+ IA + G P + + I+ + L
Sbjct: 148 ATAEKYKL--KTIADLAPVASEFVLGGPPEWKTRKEGIIGLKEVYGLE--FKSLKALDVG 203
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDK 237
+ N + P + ++ L + + +V V+ + + +
Sbjct: 204 GPLTL--SALVNGQIQAANLFSTDPAIATNDLVMLEDVKNLF--PAQNVVPVIATAKVSE 259
Query: 238 CPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRTHP 281
+++ L + + M + N V L H
Sbjct: 260 T--VAKTLDAVSAALTTKDLVVMNGRLG-NHDSFDVVAGDWLAQHK 302
>gi|148553709|ref|YP_001261291.1| substrate-binding region of ABC-type glycine betaine transport
system [Sphingomonas wittichii RW1]
gi|148498899|gb|ABQ67153.1| Substrate-binding region of ABC-type glycine betaine transport
system [Sphingomonas wittichii RW1]
Length = 517
Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 24/280 (8%), Positives = 64/280 (22%), Gaps = 34/280 (12%)
Query: 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKLLAVPVTFRSLKNKGID 77
A + V +++ L GY+T L + +R+L I
Sbjct: 242 GDAARTGDVVVIGAKNFSEQYILAEAIEQRLRAA-GYRTARRDNLGSAIAYRALAAGDIA 300
Query: 78 IFMGYWYPSLEKFI----------------APYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+++ Y + ++L+ Y A+
Sbjct: 301 VYVDYSGTLWSNVLGRTDTPPPDVMLRRLERDLAARDGVRLLGALGFENAYTFAMKRDRA 360
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
+ + + + S +
Sbjct: 361 RA--LGIATLEDLARAAPRLRLASDLEFLSRPEWRAVQARY------HPTFADQRSYSPT 412
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNI 241
+ R + V ++ + +++ + +A + R P +
Sbjct: 413 FMYRALADGSADVISAFSSDGRIAAMDLVTIADPRAALPHYDAVLLLSRR---AAADPGL 469
Query: 242 SRLLKNI--KFSVALENEMMKLILNN--KQDRQFVGRTML 277
L+ + + ++ + K+ R L
Sbjct: 470 VAALRPLVGAIDIGRMRTANGMVDRDIAKRSPAQAAR-WL 508
>gi|118470013|ref|YP_890551.1| ABC transporter substrate-binding protein [Mycobacterium smegmatis
str. MC2 155]
gi|118171300|gb|ABK72196.1| ABC transporter, quaternary amine uptake transporter (QAT) family
protein, substrate-binding protein [Mycobacterium
smegmatis str. MC2 155]
Length = 229
Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 19/215 (8%), Positives = 53/215 (24%), Gaps = 7/215 (3%)
Query: 68 FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKS 127
+ + D P G + ++ + K LAV + +
Sbjct: 12 YTGNLLQYFDPETPATTPDAVLLGLFKALPGDLSILYPSPAEDKDTLAVTEETAQR--WN 69
Query: 128 YQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRD 186
+ I + G ++ + + + + S+ + + +
Sbjct: 70 LKSIEDLAQHSAEVKVGGPSEFQTRQTGLVGLKSKYGLDIAPANFVAISDGGGPATV-QA 128
Query: 187 QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLK 246
+ + P ++ L + + V V ++ + +
Sbjct: 129 LNSGAITAANIFSTSPAIEQHHLVVLEDPKNVFL-AANVVPLVASQKMSNELKTVLDAVS 187
Query: 247 NIKFSVALENEMMKLILNN-KQDRQFVGRTMLRTH 280
K + EM + N D + +
Sbjct: 188 A-KLTTEALIEMNTAVEGNAGVDPDEAAAKWVADN 221
>gi|320533096|ref|ZP_08033828.1| Tat pathway signal sequence [Actinomyces sp. oral taxon 171 str.
F0337]
gi|320134668|gb|EFW26884.1| Tat pathway signal sequence [Actinomyces sp. oral taxon 171 str.
F0337]
Length = 328
Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/303 (9%), Positives = 66/303 (21%), Gaps = 37/303 (12%)
Query: 4 ILAVCLFLTT--FSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEE-ILGYKTNIK 60
+LA+ T F++ A S P+ + + + ++E+ L +
Sbjct: 28 LLALSACSDTDPFAVDRASGGYSGGPIIIGSQQYYSNEIIAELYAQMMEKVGLSVTREYQ 87
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEE----------------------- 97
+ V L+ I + Y LE +
Sbjct: 88 IGQREVYLPELEAGKIHVIPEYGGNLLEYYSKTSASGSPTTATPARTAGDTASIQDTLLR 147
Query: 98 ---GSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQR 154
S+ ++ + L V S I
Sbjct: 148 TLPHSLTVLNPAEATDQDSLTVTKATAQAH--SLTSIGDLASLGRPITIAANSEFTTRPY 205
Query: 155 ILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPG 214
+ +E S + + V + P ++ L
Sbjct: 206 GPKGLKAVYGVDASVTPVEDSGGPLT---VKALTDGTVDVADIYSSDPAIRAKDLVILSD 262
Query: 215 GEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGR 274
+ +V +V + + + + + K + +
Sbjct: 263 PQ--MLILPQNVTPLVSASMPAIAATAINRVSAL-LTPDELRSLNHRSTGEKLSSKVIAT 319
Query: 275 TML 277
L
Sbjct: 320 DWL 322
>gi|312144107|ref|YP_003995553.1| Substrate-binding region of ABC-type glycine betaine transport
system [Halanaerobium sp. 'sapolanicus']
gi|311904758|gb|ADQ15199.1| Substrate-binding region of ABC-type glycine betaine transport
system [Halanaerobium sp. 'sapolanicus']
Length = 314
Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 18/132 (13%), Positives = 39/132 (29%), Gaps = 8/132 (6%)
Query: 148 GNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDL 207
E I + F L ++ V + + S L
Sbjct: 44 FLEREDGIPGLEKEYDFRFDRDAL----STIQIGLSYEALDSDKVDVAMGYATDGRISSL 99
Query: 208 NIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNN 265
N+ L +V +VR + L + P + L+ ++ F+ E+ + +
Sbjct: 100 NLRMLEDDRRFF--PAYNVAALVRGEVLAEHPELEELIHDLTVLFTDEKLIELNERADVD 157
Query: 266 KQDRQFVGRTML 277
++ + L
Sbjct: 158 GEEPDQIAEDFL 169
Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/147 (15%), Positives = 48/147 (32%), Gaps = 20/147 (13%)
Query: 9 LFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPV 66
L + + + + + + WT+ ++T +LE GY L + V
Sbjct: 168 FLLESSLLVENAEEKEGSTIVVSSKNWTEQLILGSITVQLLENH-GYNVRDRSSLGSTAV 226
Query: 67 TFRSLKNKGIDIFMGYWYPSLEKFIAPY----------------LEEGSIKLVAENLQGA 110
++++ IDI+ Y +L + E +I +
Sbjct: 227 LRNAIESDQIDIYWEYTGTTLMTSMGEEGIVSAEEAYEKVREWDKETHNIHWLNFAEANN 286
Query: 111 KYMLAVNDVGFAL-GIKSYQDIAKYKK 136
Y L + + +K+ D+A Y
Sbjct: 287 TYTLLMREERAEELNLKTISDLANYIN 313
>gi|92113824|ref|YP_573752.1| periplasmic glycine betaine/choline-binding (lipo)protein of an
ABC-type transport system-like protein [Chromohalobacter
salexigens DSM 3043]
gi|91796914|gb|ABE59053.1| periplasmic glycine betaine/choline-binding (lipo)protein of an
ABC-type transport system-like protein [Chromohalobacter
salexigens DSM 3043]
Length = 324
Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 17/161 (10%), Positives = 42/161 (26%), Gaps = 7/161 (4%)
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
++ + ++G L + ++ L + +
Sbjct: 32 EAEQEASASKHGPETIANQFVFGSGKECPHEPYCLPALEE-EYGLHFADFVVTDPGGPRT 90
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNI 241
R N + + + + + L +V V D P +
Sbjct: 91 --REALLNGDIQIGVLFTTNGYLATDRFVLLEDDRNA--QPAENVIPVAHQSIGDAYPEL 146
Query: 242 SRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+L + + EM + + D + + R L+ H
Sbjct: 147 GEVLDPLSAVLTTPELAEMNRRFALDGVDAETIAREWLKEH 187
Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 14/122 (11%), Positives = 32/122 (26%), Gaps = 13/122 (10%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLK 72
+ + + + + + M L++ GY T ++ L+
Sbjct: 191 APAESAPEKEGPTIVVGSGNFAESIILAEMYHQALDQA-GYPTRHRQEIGNRATYLPLLE 249
Query: 73 NKGIDIFMGYWY----------PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
+ ID+F Y + + ++ L E + K V
Sbjct: 250 SGEIDLFPEYTGSLGGWLNTLADTSGQPLSALLPEHDLVGFEPAPAQDKNGFVVTAETAQ 309
Query: 123 LG 124
Sbjct: 310 RY 311
>gi|225181818|ref|ZP_03735255.1| Substrate-binding region of ABC-type glycine betaine transport
system [Dethiobacter alkaliphilus AHT 1]
gi|225167491|gb|EEG76305.1| Substrate-binding region of ABC-type glycine betaine transport
system [Dethiobacter alkaliphilus AHT 1]
Length = 313
Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 16/143 (11%), Positives = 41/143 (28%), Gaps = 10/143 (6%)
Query: 140 AKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWE 199
+ + + F +++ + R+ AV + +
Sbjct: 32 WVFATDHEYSVRPDGYPGVTDLYGFEFDDVIIMDQGIT------YQALRDGDVAVAMGFA 85
Query: 200 PHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENE 257
+ ++ L +E +V V + L++ P I LL ++ +E
Sbjct: 86 TDGRIAAFDLVNLEDDKEFH--PVYNVAPNVLTATLEEYPEIEGLLNSVVPLLDEETMSE 143
Query: 258 MMKLILNNKQDRQFVGRTMLRTH 280
+ + + V L +
Sbjct: 144 LNARVDIEGYEPDEVAYEFLLDN 166
Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/126 (12%), Positives = 31/126 (24%), Gaps = 19/126 (15%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPVTFRSLK 72
IS P+ +T+ M ++LE G++ L + +L+
Sbjct: 168 LISETAADGDKGPISIGSKEFTEQLLLGQMAVLLLEND-GFQVEDNTGLGGTSIVREALE 226
Query: 73 NKGIDIFMGYWYPSLEKFI----------------APYLEEGSIKLVAENLQGAKYMLAV 116
N I I+ Y + I + + Y +
Sbjct: 227 NDEIQIYWEYTGTAWMTHFGNEEAITNPEECYALVKEEDANNGITWLDYSDFNNTYTFMM 286
Query: 117 NDVGFA 122
Sbjct: 287 RRADAD 292
>gi|217978293|ref|YP_002362440.1| Substrate-binding region of ABC-type glycine betaine transport
system [Methylocella silvestris BL2]
gi|217503669|gb|ACK51078.1| Substrate-binding region of ABC-type glycine betaine transport
system [Methylocella silvestris BL2]
Length = 306
Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 36/303 (11%), Positives = 83/303 (27%), Gaps = 34/303 (11%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NI 59
++A L + A PV + + A M + L G N+
Sbjct: 9 RSLVASALAFSAAGTFAAA------PVVVSSKLDLEGALLGEMMLIALRRA-GVPAVANL 61
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS------------------IK 101
++ + ++L + +D+ + Y + F +
Sbjct: 62 QIGPTAILRQALISGAVDLCVEYTGNAAFFFHREDDPVWRDARAGFLRAAMLDLKANSLV 121
Query: 102 LVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKE--LGAKIYGIEPGNEGNQRILDMI 159
+ +++AV + S + AK+ E +
Sbjct: 122 WLDPAPADNSWVIAVPNALAREQSLSTLEDFATWVNSGARAKLAASAEFVESEAGLPAFE 181
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
F L +L+ S + + ++ + +++ L++ L
Sbjct: 182 AAYHFHLSADQLLVLSGGETTATMKAASAGISGVNAAMAYATDGALDALDLRALEDPRRA 241
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTM 276
+ V+R+ L P I L + + + + I +D V R
Sbjct: 242 --EPVYAPAPVIRAGTLAAYPQIRGALAPVFAGLDLKTLRALNERIAVEGEDAALVARDY 299
Query: 277 LRT 279
+
Sbjct: 300 MME 302
>gi|328765667|gb|EGF75821.1| hypothetical protein BATDEDRAFT_93312 [Batrachochytrium
dendrobatidis JAM81]
Length = 110
Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 13/105 (12%), Positives = 34/105 (32%), Gaps = 4/105 (3%)
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDK 237
+ + N+ V L++ + ++ L ++ V + L+K
Sbjct: 1 MQIGLVYQALANDEMDVVLAYTSDGRIAAFDLQILEDDKKFF--PPYDTSLVASNAILEK 58
Query: 238 CPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
P + +L+ + ++ Q+ + R L+ H
Sbjct: 59 HPELEGILQKLTGTIDTEKMQQLNYEADGKLQEPASIARNFLKEH 103
>gi|300789772|ref|YP_003770063.1| glycine/betaine ABC transporter periplasmic protein [Amycolatopsis
mediterranei U32]
gi|299799286|gb|ADJ49661.1| periplasmic substrate-binding component of ABC-type glycine betaine
transport system [Amycolatopsis mediterranei U32]
Length = 290
Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/270 (9%), Positives = 77/270 (28%), Gaps = 30/270 (11%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEIL--GYKTNIKLLAVPVTFRSLKNKGIDIFMGYWY 84
+ + + + + L + + V ++L++K + + Y
Sbjct: 31 DIIIGASDVGESLLLAQIYAGALRGAGAENVTVRPPVGSREVVVKALQDKSLSVVPDYSG 90
Query: 85 P------------SLEKFIAPYLEE--GSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD 130
+ + A ++ +++ + K +L V + G+K++ D
Sbjct: 91 NLLRYFDKNTTATTSQDVYAQLRQKIPPGFEVLDQAPAEDKDLLVVGPQLASSGVKTFSD 150
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
+ + +EL ++G D I + + + + + ++
Sbjct: 151 LGRRCREL---VFGGPGQWSSRW--KDKIKSL-YGCEFKEIRTTDTGGPVT--VAALKSG 202
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK- 249
V + + L + + F ++ +V L P L +
Sbjct: 203 DVQVADLFSASSTIAANGFVPLVD--DKNMFPAQNIVPLVARGTLS--PREVSALNRVSA 258
Query: 250 -FSVALENEMMKLILNNKQDRQFVGRTMLR 278
+ + K++ + L
Sbjct: 259 ALTTEQLTRLNVEFTEEKRNPLDIAEDFLA 288
>gi|257070097|ref|YP_003156352.1| periplasmic glycine betaine/choline-binding (lipo)protein of an
ABC-type transport system (osmoprotectant binding
protein) [Brachybacterium faecium DSM 4810]
gi|256560915|gb|ACU86762.1| periplasmic glycine betaine/choline-binding (lipo)protein of an
ABC-type transport system (osmoprotectant binding
protein) [Brachybacterium faecium DSM 4810]
Length = 315
Score = 74.5 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/309 (10%), Positives = 81/309 (26%), Gaps = 35/309 (11%)
Query: 2 YKILAVCLFLTTFSISYARDADSC--------------------TPVRFADTGWTDIAAT 41
+ L L + ++ A S + +
Sbjct: 7 RRHLLGALGVGGIALGAAACGSSDPFDEDGGDSGGSGSDGGSGSGTLAVGSQAYYSNEIV 66
Query: 42 TAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS 99
+ + +LE G+ + + V L+ +D+ Y L+ + +
Sbjct: 67 AELFAQVLEAE-GFTVDRQFQIGQREVYMPELEAGSLDVLPEYLGNLLQHYDSEAGTASP 125
Query: 100 IKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRI--LD 157
++ A + L V A SY + + G G E + +I
Sbjct: 126 EEIHAALGEALPEGLRVLSFAEASDQDSYTTTSDFASAHSLAAIGDLAGVEEDLKIAANS 185
Query: 158 MINNNKFSLKGFRLIEASELASFS-------QIRRDQRNNIPAVFLSWEPHPINSDLNIH 210
+ + G + ++ + + + + P ++ ++
Sbjct: 186 EFDVRPYGPDGVESVYGVDVTVVPVEDSGGPLTVQALLDGDVQLADIYTADPAIAENDLV 245
Query: 211 YLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQ 270
L E + +V VV D + + S E+ + + ++
Sbjct: 246 VLEDPESMIL--PQNVVPVVSEKVDDAAAEAIDAVLA-QLSADDLVELNRQSVVDQASSA 302
Query: 271 FVGRTMLRT 279
+ L
Sbjct: 303 EIATGWLTE 311
>gi|302523299|ref|ZP_07275641.1| amino acid ABC transporter amino acid-binding protein [Streptomyces
sp. SPB78]
gi|318062280|ref|ZP_07981001.1| amino acid ABC transporter amino acid-binding protein [Streptomyces
sp. SA3_actG]
gi|318076797|ref|ZP_07984129.1| amino acid ABC transporter amino acid-binding protein [Streptomyces
sp. SA3_actF]
gi|302432194|gb|EFL04010.1| amino acid ABC transporter amino acid-binding protein [Streptomyces
sp. SPB78]
Length = 322
Score = 72.9 bits (177), Expect = 6e-11, Method: Composition-based stats.
Identities = 26/287 (9%), Positives = 77/287 (26%), Gaps = 35/287 (12%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFR-SLKNKGIDI 78
+ G+T+ M ++L + GY T + ++ + +L++ ID+
Sbjct: 42 APPGDSKQLTIGSAGFTESDLLAHMYKLLL-DKAGYHTRLITVSNRELYEPALESGQIDV 100
Query: 79 FMGY-----------------------WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
Y + + + ++ + A
Sbjct: 101 VPEYAATFADWLNAKKNGADAEPVGSPDLDRTMRRLRALAAARGLDVLDPGRAVDQNAYA 160
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
V + +L +I + + L+
Sbjct: 161 VTRAYAREHKLRTLSDLG-RAKLPVRIAAGDECATRPYCAPGLKKTYGIDLRAID----P 215
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYL 235
+ +Q ++ ++ + + + + L +++ + VV
Sbjct: 216 KGLGTTQAKKAVQDGRDQLVATTTTDATLDEFGLVLLRDDKKL--QNADYLVPVVNRSRA 273
Query: 236 --DKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ L + + A ++ + + + ++ + V R L H
Sbjct: 274 GSRRVAAALDRLNKV-LTTADLADLNRRVDSWRRLPEDVARDYLDRH 319
>gi|300776864|ref|ZP_07086722.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, membrane protein [Chryseobacterium gleum
ATCC 35910]
gi|300502374|gb|EFK33514.1| glycine betaine/L-proline ABC superfamily ATP binding cassette
transporter, membrane protein [Chryseobacterium gleum
ATCC 35910]
Length = 522
Score = 72.6 bits (176), Expect = 7e-11, Method: Composition-based stats.
Identities = 12/134 (8%), Positives = 45/134 (33%), Gaps = 4/134 (2%)
Query: 149 NEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLN 208
+ + + + L + S + + + + + +
Sbjct: 242 AGFTPEFMGRQDGDIGLRSVYGLNVNPLVVSDAIMYKAAYEKELDLISGYSTDGRIKAYD 301
Query: 209 IHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNK 266
++ L ++I ++++ L K P++ + L + KF+ ++ ++ +
Sbjct: 302 LYVLDDDQKIF--PPYYAAPIIKTKTLKKFPDLEKTLNLLAGKFNDSIMTDLNYRADHLH 359
Query: 267 QDRQFVGRTMLRTH 280
Q + + + L +
Sbjct: 360 QTPERIAKDFLIRN 373
Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/139 (15%), Positives = 43/139 (30%), Gaps = 25/139 (17%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGIDIFM 80
+ +R + + M ++++E GYK K + F +L N ID +
Sbjct: 382 GNSGTIRIGSKIFGEQYILAEMYTMLIEGYTGYKVETKTGLGGTKICFDALMNDAIDFYP 441
Query: 81 GYWYPSLEKFIAP----------------------YLEEGSIKLVAENLQGAKYMLAVND 118
Y L + P + ++ I+ + Y L +
Sbjct: 442 EYTGTGLLVLLKPSAETIREVSQSPDKTYHYVNAAFEKQYGIQWLQPLGFNNAYALMMRS 501
Query: 119 VGFAL-GIKSYQDIAKYKK 136
I++ D+ KY
Sbjct: 502 NQAEELHIRNISDLKKYFD 520
>gi|327189746|gb|EGE56890.1| putative glycine betaine/L-proline ABC transporter,
substrate-binding protein [Rhizobium etli CNPAF512]
Length = 127
Score = 72.2 bits (175), Expect = 9e-11, Method: Composition-based stats.
Identities = 12/105 (11%), Positives = 35/105 (33%), Gaps = 8/105 (7%)
Query: 204 NSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDK-CPNISRLLKNIKFSVALENEMMKLI 262
N + + + + V T+V + + L+ + + +M +
Sbjct: 30 WKRCNTASDCPDPKKNEWPKDHVVTLVSEKLAESGNAGVIDYLRKRSWDNQTVSSVMSWM 89
Query: 263 LNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ + + + HP++ K+WL D + ++ +
Sbjct: 90 TDTQAGGEDGAVHFFKEHPEIWKSWLS-------ADVAEKITAAL 127
>gi|307327041|ref|ZP_07606231.1| Substrate-binding region of ABC-type glycine betaine transport
system [Streptomyces violaceusniger Tu 4113]
gi|306887339|gb|EFN18335.1| Substrate-binding region of ABC-type glycine betaine transport
system [Streptomyces violaceusniger Tu 4113]
Length = 319
Score = 72.2 bits (175), Expect = 9e-11, Method: Composition-based stats.
Identities = 36/293 (12%), Positives = 83/293 (28%), Gaps = 39/293 (13%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFR-SLKN 73
S + + +++ + + +L++ GY T+IK + + +L+
Sbjct: 33 SGGDSTGKPGKGSLVIGSASFSESKILAELYAGVLKDA-GYSTSIKTVDARELYEPALEK 91
Query: 74 KGIDIFMGYWYPSLE-----------------------KFIAPYLEEGSIKLVAENLQGA 110
+D+ Y E + E +K++
Sbjct: 92 GQMDVVPEYAATLAEFLNQKKNGSNAAPVASSDVDETVTALKKLAEPRGLKVLDPGKAVD 151
Query: 111 KYMLAVN-DVGFALGIKSYQDIAKYKKELG-AKIYGIEPGNEGNQRILDMINNNKFSLKG 168
+ AV D +K+ D+ K K+++ A + + G
Sbjct: 152 QNAFAVGGDFAKEHDLKTLSDLGKSKQKVTLAAGDECPKRPFCQPG---LEKKYGIDIAG 208
Query: 169 FRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYT 228
Q ++ ++ + L+ + L + + +V
Sbjct: 209 ID----PLDIGSVQAKQAVKDGKDQMVLTTTTDSTLDQFGLVLLDD--DKNLQNADNVLP 262
Query: 229 VVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
VV + I+ L + + A E+ K + + V LR
Sbjct: 263 VVNAKSAGS-QKIADSLNKLTKVLTTADLRELNKKVDAERLKPTDVAADYLRD 314
>gi|302544365|ref|ZP_07296707.1| glycine betaine/choline-binding protein of an ABC-type transport
system [Streptomyces hygroscopicus ATCC 53653]
gi|302461983|gb|EFL25076.1| glycine betaine/choline-binding protein of an ABC-type transport
system [Streptomyces himastatinicus ATCC 53653]
Length = 325
Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/282 (10%), Positives = 78/282 (27%), Gaps = 39/282 (13%)
Query: 26 TPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFR-SLKNKGIDIFMGY-- 82
+ + + + + +LE GY T++K + + +L+ +D+ Y
Sbjct: 50 GSLVIGTASFAESKILAELYAGLLENA-GYSTSLKTVDTRELYEPALEKGQMDVVPEYAA 108
Query: 83 ---------------------WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV-NDVG 120
K + E +K++ + AV
Sbjct: 109 TLAEFLNQKKNGPNAEPVASSDADDTVKALKKLAEPRGLKVLDVGKAVDQNAFAVTRKFA 168
Query: 121 FALGIKSYQDIAKYKKELG-AKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+K+ D+ K +++ A + + + + +
Sbjct: 169 EEHDLKTLSDLGKSGQKVKLAAGDECPKRPFCQPGLEKR-----YGIDIAGIDPLDIGSV 223
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+ ++ ++ + L+ + L + + +V VV +
Sbjct: 224 QA--KQAVKDGKDQMVLTTTTDATLDQFGLVLLDD--DKNLQNADNVLPVVNAKSAGSS- 278
Query: 240 NISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
I L + + A E+ K + + V L+
Sbjct: 279 KIENALNKLGRVLTTADLTELNKKVDAERLKPADVAADYLKE 320
>gi|282866350|ref|ZP_06275395.1| Substrate-binding region of ABC-type glycine betaine transport
system [Streptomyces sp. ACTE]
gi|282558746|gb|EFB64303.1| Substrate-binding region of ABC-type glycine betaine transport
system [Streptomyces sp. ACTE]
Length = 325
Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/320 (8%), Positives = 74/320 (23%), Gaps = 60/320 (18%)
Query: 5 LAVCLFLTTFSISYARDA----------------DSCTPVRFADTGWTDIAATTAMTSVI 48
L L + D+ + +T+ + + +
Sbjct: 11 LVTAAVLAGSLAACGGDSLEQGKGGGSDGGSGGDAKKGSLVVGAAAFTESKVLAELYARV 70
Query: 49 LEEILGYKTNIKLLAVPVTFR-SLKNKGIDIFMGYWYP---------------------- 85
L + GY T++ + + SL+ ID+ Y
Sbjct: 71 LGDA-GYSTSVTTVKNRELYEPSLEKGEIDVVPEYAATIAEFLNAKVNGAAEAEKKPVAS 129
Query: 86 ----SLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAK 141
+ + +K++ + AV+ K
Sbjct: 130 GDTAATVAALEKLATPLGLKVLPAGKAVDQNAFAVSKEFAEKNKLRTLSDLGRSKIAVKI 189
Query: 142 IYG--IEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWE 199
G E + + G + Q ++ ++ + L+
Sbjct: 190 AAGDECEIRPFCAPG---LKKTYGIDVAGID----PKGVGTPQSKQAVKDGTDQLVLTTT 242
Query: 200 PHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENE 257
+ + ++ + +V V+ + I+ L + + E
Sbjct: 243 TDAVL---DGLVFLEDDKKLQNAD-NVLPVLNAK-DAGAQEIADALGKLSDTLTTEDLAE 297
Query: 258 MMKLILNNKQDRQFVGRTML 277
+ + + + L
Sbjct: 298 LNRKVDAERAKPADAAEEYL 317
>gi|217032509|ref|ZP_03438000.1| hypothetical protein HPB128_180g8 [Helicobacter pylori B128]
gi|216945787|gb|EEC24410.1| hypothetical protein HPB128_180g8 [Helicobacter pylori B128]
Length = 105
Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 12/97 (12%), Positives = 33/97 (34%), Gaps = 4/97 (4%)
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
+ ++ + +L++ L + V+R + + K P +
Sbjct: 7 YKSFESHKINALDVFTTDAQIKELDLKVLKDDKGFF--PNYQAGIVIRKEIVKKYPEVLE 64
Query: 244 LLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
+L+ + K S ++ + K+ + V + L
Sbjct: 65 ILEKLDSKISDEKMQDLNYQVEALKKSPKIVAKDFLE 101
>gi|325277755|ref|ZP_08143317.1| glycine betaine ABC transporter substrate-binding protein
[Pseudomonas sp. TJI-51]
gi|324097108|gb|EGB95392.1| glycine betaine ABC transporter substrate-binding protein
[Pseudomonas sp. TJI-51]
Length = 186
Score = 71.8 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/187 (13%), Positives = 52/187 (27%), Gaps = 23/187 (12%)
Query: 1 MYKI----LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
M I + L + S A AD P+ F W A TT + +I+E GY
Sbjct: 1 MKTIPALLAGLLLTVGLASTDSAAAADQPAPIHFGAISWESGALTTEILRLIVERGYGYP 60
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
T+ + +L + + W + + + + ++ A+ V
Sbjct: 61 TDTLPGSTVSMEVALARNDLQVIAEEWA-GRSPAWVKAEQASQVFALGDTVKNAEEGWWV 119
Query: 117 NDVGFA-----------LGIKSYQDIAKYKKELGA-------KIYGIEPGNEGNQRILDM 158
++ QD+ +Y + + G
Sbjct: 120 PAYVIEGDPARGIKPSAPDLRQVQDLKRYPQVFRDPESPDKGRFLNSPSGWTSETVNSQK 179
Query: 159 INNNKFS 165
+ +
Sbjct: 180 LKAYGLN 186
>gi|255604941|ref|XP_002538310.1| conserved hypothetical protein [Ricinus communis]
gi|223512793|gb|EEF24074.1| conserved hypothetical protein [Ricinus communis]
Length = 182
Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 51/157 (32%), Gaps = 20/157 (12%)
Query: 18 YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGID 77
+ PVRFA W + T+ + I E+ G KT+ T +L +
Sbjct: 26 AGAWCSAGKPVRFAGVTWESGSFTSEVLRFITEKGYGCKTDTIPGNTAATETALSRDDLQ 85
Query: 78 IFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAK-YMLAVNDVGFA-----------LGI 125
++ W + IA + +G +KL+ + L G V + +
Sbjct: 86 VWSEQW-TGRSEIIAKAVNDGRVKLLGDTLPGGTNEGWFVPEYVVKGDAKRNIKPVAPNL 144
Query: 126 KSYQDIAKYKKELGA-------KIYGIEPGNEGNQRI 155
S D+ KYK + G + +
Sbjct: 145 ASVNDLPKYKGVFEDDEEPGKGRFLNCPSGWDCERVN 181
>gi|329945993|ref|ZP_08293680.1| Tat pathway signal sequence domain protein [Actinomyces sp. oral
taxon 170 str. F0386]
gi|328528441|gb|EGF55419.1| Tat pathway signal sequence domain protein [Actinomyces sp. oral
taxon 170 str. F0386]
Length = 332
Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/294 (8%), Positives = 59/294 (20%), Gaps = 37/294 (12%)
Query: 14 FSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSL 71
F+I A S P+ + + + +LE+ G + V L
Sbjct: 40 FAIDRASGGYSGGPIIIGSQQYYSNEIIAELYAQMLEKA-GLTVTRQYQIGQREVYLPEL 98
Query: 72 KNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAEN------------------------- 106
+ I + Y LE +
Sbjct: 99 EAGKIHVIPEYGGNLLEYYSKTAGSGSPSTATGTAAPSRAASDTTSIQDTLLTTLPRSLT 158
Query: 107 ---LQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK 163
A ++ S IA + +
Sbjct: 159 VLTPAEATDQDSLTVTRATAQAHSLTSIADLASLGRPITIAANSEFTTRPYGPEGLKAVY 218
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+E S + + V + P+ ++ L +
Sbjct: 219 GVEASVTPVEDSGGPLT---VKALTDGTVDVADIYSSDPVIQTQDLVVLSDPQ--MLILP 273
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTML 277
+V +V + + + + + + + + L
Sbjct: 274 QNVTPLVSASLPAIAVTAINRVSAL-LTPDELRALNQRSTGEGLRSKVIATDWL 326
>gi|218506556|ref|ZP_03504434.1| probable glycine betaine/L-proline ABC transporter,
substrate-binding protein [Rhizobium etli Brasil 5]
Length = 76
Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 15/83 (18%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 226 VYTVVRSDYLDK-CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLL 284
V T+V + +K P + LK +S N++M + +N+ + + L + D+
Sbjct: 1 VVTLVAKPFSEKVGPEVMDYLKKRSWSNDTVNKLMSWMTDNQATGEDGAKHFLEENKDIW 60
Query: 285 KNWLIGVTTFDGQDPSRQLERFM 307
W+ + + ++E +
Sbjct: 61 TKWVS-------PEAAAKIEAAL 76
>gi|302535204|ref|ZP_07287546.1| amino acid ABC transporter amino acid-binding protein [Streptomyces
sp. C]
gi|302444099|gb|EFL15915.1| amino acid ABC transporter amino acid-binding protein [Streptomyces
sp. C]
Length = 328
Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/324 (9%), Positives = 81/324 (25%), Gaps = 57/324 (17%)
Query: 3 KILAVCLFLTTFSISYARDADSC-------------------TPVRFADTGWTDIAATTA 43
+IL L ++S A + G+T+
Sbjct: 6 RILGATLGAVALTVSLAACGGESLEKAKDGGSASAPAGGGGKGKLVVGAAGFTESNVLAE 65
Query: 44 MTSVILEEILGYKTNIKLLAVPVTFR-SLKNKGIDIFMGYWYP----------------- 85
+ + +L GY T++ + + SL+ ID+ Y
Sbjct: 66 LYAQVL-RGAGYDTSVTTVNNRELYEPSLEKGEIDVVPEYAATLAEFLNAKVNGPNAPKE 124
Query: 86 ---------SLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKK 136
+ + +K + + AV+ + + ++ K
Sbjct: 125 KPVASSDAAATVAALEKLAAPLGLKALPAGSAVDQNAFAVSREFAQKN--NLKSLSDLGK 182
Query: 137 ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFL 196
+ + Q ++ ++ + + L
Sbjct: 183 SGLKVKIAAGDECAVRPFCAPGLEKTYGIAVSG---IDPKGVGTPQAKQAVKDGVDQLVL 239
Query: 197 SWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVAL 254
+ + L +++ +V VV + P ++ L + + A
Sbjct: 240 TTTTDATLDAYGLVLLEDDKKL--QNADNVLPVVNAK-DAGAPEVATALDALTKALTTAD 296
Query: 255 ENEMMKLILNNKQDRQFVGRTMLR 278
E+ + + + V + L
Sbjct: 297 LVELNRKVDAERAKPADVAKAYLE 320
>gi|254385652|ref|ZP_05000975.1| amino acid ABC transporter amino acid-binding protein [Streptomyces
sp. Mg1]
gi|194344520|gb|EDX25486.1| amino acid ABC transporter amino acid-binding protein [Streptomyces
sp. Mg1]
Length = 329
Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/281 (10%), Positives = 77/281 (27%), Gaps = 40/281 (14%)
Query: 28 VRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFR-SLKNKGIDIFMGYWYP- 85
+ G+T+ + + +L + GY T+I ++ + SL+ ID+ Y
Sbjct: 52 LVIGAAGFTESNVLAELYAQLLGDA-GYGTSITTVSNRELYEPSLEKGEIDVVPEYAATL 110
Query: 86 -------------------------SLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ + +K + + AV+
Sbjct: 111 AEFLNAKVNGPKAPEEKPVASSDPAATVAALEKLAAPLGLKALPVGTAVDQNAFAVSKDF 170
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRI-LDMINNNKFSLKGFRLIEASELAS 179
A + + ++ K + + G +
Sbjct: 171 AAKN--NLKTLSDLGKSGLKVKIAAGDECAVRPFCAPGLKKAYGIDVSGID----PKGVG 224
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
Q ++ ++ + L+ + L +++ +V VV + P
Sbjct: 225 TPQAKQAVKDGADQLVLTTTTDATLDSFGLVLLEDDKKL--QNADNVLPVVNAK-DAGAP 281
Query: 240 NISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLR 278
++ L + + A ++ + + + V + L
Sbjct: 282 EVAAALDKLTKVLTTADLADLNRKVDAERAKPADVAKAYLA 322
>gi|332716949|ref|YP_004444415.1| proline/glycine/betaine ABC transporter substrate binding protein
[Agrobacterium sp. H13-3]
gi|325063634|gb|ADY67324.1| proline/glycine/betaine ABC transporter substrate binding protein
[Agrobacterium sp. H13-3]
Length = 304
Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/290 (11%), Positives = 75/290 (25%), Gaps = 39/290 (13%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--LLAVPVTFRSLK 72
+ A T + + + + + L G K + + V +L
Sbjct: 29 LAAPATPRTDTTTIIVGSADFPESQLLATIYAKAL-AAKGVAVETKLSIGSREVYIPALL 87
Query: 73 NKGIDIFMGYWY--------------PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ ID+ Y PS + ++ + +AV
Sbjct: 88 DGSIDLLPEYAGATLSYLDKNATAHSPSDVAAALKAALPKGVSMLTPSAAQDSDSVAVTR 147
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGN-QRILDMINNNKFSLKGFRLIEASEL 177
+ IA + G P + + I+ + + F+ ++
Sbjct: 148 ATADKYKL--KTIADLAPVASQLVLGGPPEWKTRKEGIIGLKELYGLEFQSFKSLDVGGP 205
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDK 237
+ S + N + P + ++ L + + ++ V+
Sbjct: 206 LTLSALI----NGQVHAANLFSTDPAIAANDLIVLEDVKNLF--PAQNIVPVI------A 253
Query: 238 CPNISRL----LKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRTHP 281
P +S + L + + M + N V L H
Sbjct: 254 TPKVSDVVTSTLDAVSAALTTKDLVVMNGRLA-NHDSFDVVAGDWLAEHK 302
>gi|294501452|ref|YP_003565152.1| aliphatic sulfonates ABC transporter aliphatic sulfonates-binding
protein SsuA [Bacillus megaterium QM B1551]
gi|294351389|gb|ADE71718.1| aliphatic sulfonates ABC transporter, aliphatic sulfonates-binding
protein SsuA [Bacillus megaterium QM B1551]
Length = 328
Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 44/298 (14%), Positives = 89/298 (29%), Gaps = 34/298 (11%)
Query: 1 MYKILAVCLFLTTFSISY------ARDADSCT-PVRFADTGWTDIAATTAMTSVILEE-- 51
M K+L + +++ A ADS + E+
Sbjct: 1 MKKLLLTAAIVLVLALAGCGTKEKASGADSKDVTINIGIQQSLGPLMLAQNQK-WFEKEF 59
Query: 52 -ILGYKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQG 109
+G P F L + +D P I+ + +A + G
Sbjct: 60 KKIGVNVKWTEFQSGPPQFEGLASGHLDFGQVGNSP----VISGQGADIPFLEIANSSDG 115
Query: 110 AKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
K + K K+L K + G+ G + ++ N
Sbjct: 116 LKG---------NAILVGKNSKIKSVKDLKGKKIAVAKGSSGFNLLYRALDQNGLKPSDV 166
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV 229
++I+ + + N + WEP +L + S + +T+
Sbjct: 167 KIIQLQPD----EAQPAFENGSVDAWSIWEPFISLQNLKNEARILADGDSLKVASPGFTI 222
Query: 230 VRSDYLDKCPN-ISRLL----KNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPD 282
VR + P + + L K +++ E + ++ K + V R +L+ +P
Sbjct: 223 VREGFAKDHPELVVKFLQVYQKALEWQNEHFEESVDILAKQKNLDKDVVRQVLKNNPA 280
>gi|290986123|ref|XP_002675774.1| predicted protein [Naegleria gruberi]
gi|284089372|gb|EFC43030.1| predicted protein [Naegleria gruberi]
Length = 638
Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/207 (12%), Positives = 63/207 (30%), Gaps = 20/207 (9%)
Query: 101 KLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN 160
+ + + + + S I G + +++++ +
Sbjct: 1 MDIGDLGPLGQVGWYIPNWMAIDNPLSLNYRYYRTVNATRYISGAKTWVNFDEQVIKNLK 60
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLN--IHYLPGGEEI 218
N + +E ++R +R V + PH + S N
Sbjct: 61 LNLVLEYPPQNY--TEKFLIQELRNAERERKQLVSYFFTPHQLFSRPNAPQRVTLPPFTA 118
Query: 219 SGFGEASV-YTVVRSDYLD------------KCPN-ISRLLKNIKFSVALENEMMKLILN 264
+V +V D+ P + L+ +K + A + E++ L+
Sbjct: 119 ECVSPHNVENNLVDCDFAMTTYSKLQTRAVLSFPEKVQNFLERMKLTNADQIELLGLVSY 178
Query: 265 NKQDRQFVGRTML--RTHPDLLKNWLI 289
+K ++ T + + + K+W+
Sbjct: 179 DKMSKEDAACTWILKGNNTERWKSWIS 205
>gi|312193999|ref|YP_004014060.1| glycine/betaine ABC transporter substrate-binding protein [Frankia
sp. EuI1c]
gi|311225335|gb|ADP78190.1| Substrate-binding region of ABC-type glycine betaine transport
system [Frankia sp. EuI1c]
Length = 330
Score = 71.0 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/278 (11%), Positives = 78/278 (28%), Gaps = 36/278 (12%)
Query: 26 TPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSL-KNKGIDIFMGYWY 84
+ AD G+T+ + + +L + GY + +A S ++ ID+ Y
Sbjct: 55 GHLTVADAGFTESKILADIYAQLLTKA-GYGVDRTSIASTEIAESSLESGQIDVMPQYVA 113
Query: 85 PSLE-----------------------KFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ + + + + + AV
Sbjct: 114 TYADLLSSLVNGKDTPPVSSSDLTASLAALRRFAAGKGLTALNPANAVDQNAFAVTKDFA 173
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
+ G + + + +K L++ +
Sbjct: 174 SAH---QLRTLSDLGASGVAVTVAATTECPTRPFCQPGLERTYGIKIAGLVQ--TGFDTA 228
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNI 241
Q + R+ + + L D + L +++ ++ +V + L P I
Sbjct: 229 QTKAAVRDGLAQLGLVATTDATVDDYGLVILTDDKKL--QNADNLVPIVNTRSL--TPEI 284
Query: 242 SRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
S L + + A ++ + + ++ + V L
Sbjct: 285 SAALNVLAPVLTTADLADLDRRVDSDGEASAAVATEYL 322
>gi|256392267|ref|YP_003113831.1| glycine/betaine ABC transporter substrate-binding protein
[Catenulispora acidiphila DSM 44928]
gi|256358493|gb|ACU71990.1| Substrate-binding region of ABC-type glycine betaine transport
system [Catenulispora acidiphila DSM 44928]
Length = 304
Score = 70.6 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 35/265 (13%), Positives = 70/265 (26%), Gaps = 26/265 (9%)
Query: 31 ADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGIDIFMGYWYPSLE 88
A + + + + LE+ G K V F+ LK+ I + Y L
Sbjct: 43 ASAAFPENVLLMEIYAQALEDK-GISVERKPNVGQRDVLFQQLKSNAITVVPEYNGALLA 101
Query: 89 KFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYG---- 144
E + + L + + A S + K
Sbjct: 102 YLDKSSTESTQSGVDSAVTAKLPSNLQILNPAAAQDNDSLVVTQALATKDNLKKISDLAP 161
Query: 145 ---------IEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
Q +L + + + K F+ ++ S Q ++ V
Sbjct: 162 YAKDLVLGSAPEFKTRQQGVLGLQSQYGLTFKDFKALDNSGP----QTVSALQHGDADVV 217
Query: 196 LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVA 253
+ L + + G +V +V P L + K
Sbjct: 218 DLYSTTTAIKTNGFVVLDDDKGLF--GVQNVIPLVDKG--KLSPAGIDALNAVSAKLDTT 273
Query: 254 LENEMMKLILNNKQDRQFVGRTMLR 278
+++ ++ K+D V + L
Sbjct: 274 TLTSLLEQVVTQKKDESDVAKAWLA 298
>gi|218515912|ref|ZP_03512752.1| glycine betaine/L-proline ABC transporter, substrate-binding
protein [Rhizobium etli 8C-3]
Length = 155
Score = 70.6 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 27/162 (16%), Positives = 54/162 (33%), Gaps = 9/162 (5%)
Query: 51 EILGYKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQG 109
E GY + + + + +L I + + + ++ ++ G
Sbjct: 2 EDAGYTVKVTEFSEWGIAYAALAKSDIQALTSQTDYVAQDYWDK--NKNRLEKISPVSHG 59
Query: 110 AKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
+AV I S + + + + G KI GIEPG + + + L
Sbjct: 60 LYQGVAVPKYVP---IDSLEQLNENADKFGGKIIGIEPGAGLMRDTSNAVKEYGLKL--- 113
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHY 211
+L+E S A + ++ WEP + + Y
Sbjct: 114 QLVEGSTAAMTAALKSAYDRQEWIAVTIWEPSWMVQKYEVKY 155
>gi|254388623|ref|ZP_05003856.1| amino acid ABC transporter amino acid-binding protein [Streptomyces
clavuligerus ATCC 27064]
gi|294813234|ref|ZP_06771877.1| Putative ABC transporter substrate-binding protein [Streptomyces
clavuligerus ATCC 27064]
gi|326441656|ref|ZP_08216390.1| putative ABC transporter substrate-binding protein [Streptomyces
clavuligerus ATCC 27064]
gi|197702343|gb|EDY48155.1| amino acid ABC transporter amino acid-binding protein [Streptomyces
clavuligerus ATCC 27064]
gi|294325833|gb|EFG07476.1| Putative ABC transporter substrate-binding protein [Streptomyces
clavuligerus ATCC 27064]
Length = 321
Score = 70.3 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 29/279 (10%), Positives = 77/279 (27%), Gaps = 40/279 (14%)
Query: 28 VRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFR-SLKNKGIDIFMGY---- 82
+ +T+ + + +L + GY+T++ + + SL+ ID+ Y
Sbjct: 46 LVVGSASFTESKVLAELYAQLLADA-GYRTSVTTVKNRELYEPSLEKGEIDVVPEYAATL 104
Query: 83 ----------------------WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ ++ E +K++ + AV+
Sbjct: 105 AEFLNAKVNGPKAPERKPVASSDANATVAALSKLAEPRGLKVLPPGKAVDQNAFAVSREF 164
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
K +I + + + + G +
Sbjct: 165 AEKNKLKTLSDLGESKLGV-RIAAGDECAVRPFCAPGLKSVYGIDVTGID----PKGVGT 219
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
Q ++ R+ + + L+ ++ + +V VV + P
Sbjct: 220 PQSKQAVRDGVTQLVLTTTTDAAL---EGLVFLEDDKKLQNAD-NVLPVVNAKDAGD-PR 274
Query: 241 ISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTML 277
I+ L + + E+ + + + + V + L
Sbjct: 275 IASALGRLTSVLTTEDLAELNRRVDTERAKPKDVAKEYL 313
>gi|295706800|ref|YP_003599875.1| aliphatic sulfonates ABC transporter aliphatic sulfonates-binding
protein SsuA [Bacillus megaterium DSM 319]
gi|294804459|gb|ADF41525.1| aliphatic sulfonates ABC transporter, aliphatic sulfonates-binding
protein SsuA [Bacillus megaterium DSM 319]
Length = 328
Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 40/298 (13%), Positives = 86/298 (28%), Gaps = 34/298 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADS-------CTPVRFADTGWTDIAATTAMTSVILEE-- 51
M K+L + +++ + + E+
Sbjct: 1 MKKLLLTAAIVLVLALAGCGTKEKPSREDSKNVTINIGIQQSLGPLMLAQNQK-WFEKEF 59
Query: 52 -ILGYKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQG 109
+G P F L + +D P I+ + +A + G
Sbjct: 60 KKIGVNVKWTEFQSGPPQFEGLASGHLDFGQVGNSP----VISGQGADIPFLEIANSSDG 115
Query: 110 AKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
K + K K+L K + G+ G + ++ N
Sbjct: 116 LKG---------NAILVGKNSKIKSVKDLKGKKIAVAKGSSGFNLLYRALDQNGLKPSDV 166
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV 229
++I+ + + N + WEP +L + S + +T+
Sbjct: 167 KIIQLQPD----EAQPAFENGSVDAWSIWEPFISLQNLKNEARILADGDSLKVASPGFTI 222
Query: 230 VRSDYLDKCPN-ISRLL----KNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPD 282
VR + P + + L K +++ E + ++ K + V R +L+ +P
Sbjct: 223 VREGFAKDHPELVVKFLQVYQKALEWQNEHFEESVDILAKQKNLDKDVVRQVLKNNPA 280
>gi|295397942|ref|ZP_06807999.1| glycine betaine ABC superfamily ATP binding cassette transporter,
binding protein [Aerococcus viridans ATCC 11563]
gi|294973827|gb|EFG49597.1| glycine betaine ABC superfamily ATP binding cassette transporter,
binding protein [Aerococcus viridans ATCC 11563]
Length = 132
Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 25/134 (18%), Positives = 46/134 (34%), Gaps = 12/134 (8%)
Query: 1 MYK---ILAVCLFLTTFSISY-------ARDADSCTPVRFADTGWTDIAATTAMTSVILE 50
M+K +L + F+ V A W A+T + + +L+
Sbjct: 1 MFKKMSLLVATVIGLLFTFGSEDSYKTTVGSDSGGQTVTLATVNWESEIASTNVLAQVLK 60
Query: 51 EILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGA 110
E G+ I + + F + D +G W P+ + A + + + NL+GA
Sbjct: 61 EA-GFNVQITTVDPAIMFSRVAEGQSDAMIGGWVPTTHQAYAEKYGDS-MVDLGANLEGA 118
Query: 111 KYMLAVNDVGFALG 124
L V +
Sbjct: 119 ISALTVPTYMEDIN 132
>gi|218680621|ref|ZP_03528518.1| choline ABC transporter, periplasmic binding protein [Rhizobium
etli CIAT 894]
Length = 119
Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 55/114 (48%), Positives = 80/114 (70%), Gaps = 3/114 (2%)
Query: 2 YKILAVCLF--LTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K++ L+ + ++A D DSC+ V F+D GWTDI ATTA SV+L+ +GY+T++
Sbjct: 7 FKLVTATAVAALSVATAAFAADPDSCSTVHFSDVGWTDITATTATASVVLKS-IGYQTDV 65
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
K+L+VPVT+ SLKNK IDIF+G W P+ EK + PYL++ S++ NL GAKY
Sbjct: 66 KVLSVPVTYTSLKNKDIDIFLGNWMPTQEKDVRPYLDDKSVESFGPNLVGAKYT 119
>gi|282865704|ref|ZP_06274754.1| Substrate-binding region of ABC-type glycine betaine transport
system [Streptomyces sp. ACTE]
gi|282559348|gb|EFB64900.1| Substrate-binding region of ABC-type glycine betaine transport
system [Streptomyces sp. ACTE]
Length = 319
Score = 69.9 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 38/287 (13%), Positives = 83/287 (28%), Gaps = 28/287 (9%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFR-SLKNKGIDI 78
+ G+T+ M +++LE+ GY T I + + +L++ ID+
Sbjct: 36 APPGDSKHLTIGSAGFTESDLLAQMYALLLEQA-GYSTRILSVTNREIYEPALESGQIDV 94
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKY----------MLAVNDVGFALGIKSY 128
Y ++ + V G L V G A+ ++
Sbjct: 95 VPEYAAT-FADWLKTKADGADADPVGSPDLGTTMKALRALAAPRGLTVLPPGRAVDQNAF 153
Query: 129 QDIAKYKKELGAKIY------GIEPGNEGNQRILDMINNNKFSLKGFRLIEA---SELAS 179
A Y + + G+ + K + +
Sbjct: 154 AVAAAYAAKHRLETLSDLGRSGLPVRLAAGDECVKRPYCEPGLKKVYGIDITAVDPRGVG 213
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+Q ++ +N + L+ D + L + + VV
Sbjct: 214 TTQAKQAVQNGQDQMVLTTTTDATLDDFGLVLLAD--DRHLQNADYLVPVVNRARAGSGG 271
Query: 240 NISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLL 284
+ L + + A M + + + ++ + V RT L + L+
Sbjct: 272 -VRDALGKLNTVLTTADLARMNEQVDSWRRLPEDVARTYL-ENKGLV 316
>gi|330949853|gb|EGH50113.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae Cit 7]
Length = 90
Score = 69.5 bits (168), Expect = 6e-10, Method: Composition-based stats.
Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 3/91 (3%)
Query: 200 PHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKF-SVALENEM 258
PH + + + +L + + G E +V V K P + LK ++ S E+
Sbjct: 1 PHWMFAKWKLRFLDDPKGVYGEAE-TVDNVGSLGLEKKAPEVVAFLKKFQWASKDEIGEV 59
Query: 259 MKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
M I + + + + HPD + W
Sbjct: 60 MLAI-QDGAKPEAAAKDWVAKHPDRVAAWTA 89
>gi|213850380|ref|ZP_03381278.1| glycine betaine transporter periplasmic subunit [Salmonella
enterica subsp. enterica serovar Typhi str. M223]
Length = 168
Score = 69.5 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 19/162 (11%), Positives = 45/162 (27%), Gaps = 25/162 (15%)
Query: 152 NQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHY 211
I K + + A + + P ++ +W P+ ++ +
Sbjct: 1 EAVINHQNKAFDL-QKTVEVSHGNYAAMMADTITRFKEGKPVLYYTWTPYWVSDVMKPGK 59
Query: 212 LPGGEEI---------------------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKF 250
++ GF +++ V + +K P ++L +K
Sbjct: 60 DVVWLQVPFSSLPGEQKNIDTKLPNGANYGFPVNTMHIVANKAWAEKNPAAAKLFAIMKL 119
Query: 251 SVALENEMMKLILNNKQDRQFV---GRTMLRTHPDLLKNWLI 289
+A N ++ K V + H W+
Sbjct: 120 PLADINAQNAMMHAGKSSEADVQGHVDGWINAHQQQFDGWVK 161
>gi|239977936|ref|ZP_04700460.1| amino acid ABC transporter amino acid-binding protein [Streptomyces
albus J1074]
gi|291449848|ref|ZP_06589238.1| amino acid ABC transporter amino acid-binding protein [Streptomyces
albus J1074]
gi|291352797|gb|EFE79699.1| amino acid ABC transporter amino acid-binding protein [Streptomyces
albus J1074]
Length = 314
Score = 69.1 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 29/286 (10%), Positives = 78/286 (27%), Gaps = 35/286 (12%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFR-SLKNKGIDI 78
+ + G+T+ M +++L GY+T + +A + +L++ +D+
Sbjct: 32 APPGDSSRLTVGSAGFTESDLLAQMYALLLRRA-GYETELITVANRELYEPALESGRVDV 90
Query: 79 FMGYWYP-----------------------SLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
Y + K + + ++ + A
Sbjct: 91 VPEYAATFADWLNAKENGPDAEPVGSPDLATTMKALRRLAAPRGLTVLDPGKAVDQNAFA 150
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
V A S + ++ +
Sbjct: 151 VTREFAAEH--SLRTLSDLGASGLPVRLAAGDECVSRPYCRPGLEKTYGIDVTAV---DP 205
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYL 235
+ +Q +R ++ + L+ + L +++ +V VV
Sbjct: 206 KGVGTTQAKRAVQSGQDQMVLTTTTDATLDAFGLVLLEDDKKL--QNADAVVPVVNRARA 263
Query: 236 DKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++R L + + A + + + + ++ + V R L
Sbjct: 264 GSE-RVARALDALAPVLTTADLAGLNRQVDSWRRLPEDVARAYLEE 308
>gi|295837272|ref|ZP_06824205.1| glycine betaine/choline-binding protein [Streptomyces sp. SPB74]
gi|295826442|gb|EFG64858.1| glycine betaine/choline-binding protein [Streptomyces sp. SPB74]
Length = 328
Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 32/294 (10%), Positives = 87/294 (29%), Gaps = 37/294 (12%)
Query: 13 TFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFR-SL 71
T + D + +T+ + + +L++ GY T++K + + L
Sbjct: 39 TSASKKDDGGDKKGSLVIGAARFTEAKVLAELYAGVLKDA-GYSTSVKTVQNREVYEPEL 97
Query: 72 KNKGIDIFMGYWYP-----------------------SLEKFIAPYLEEGSIKLVAENLQ 108
+ ID+ Y + + E +K++
Sbjct: 98 RKGSIDVVPEYAATFAEWLNHDKNGENAKAVASSDVEATVAALRELAEPQGLKVLDAGKA 157
Query: 109 GAKYMLAVND-VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
+ V +K+ D+ K K+++ I + + + ++
Sbjct: 158 VDQNAFVVTKDYAAEHKLKTLSDLGKSKEKV--TIAAGDECATRSFCAPGLKKTYGINVA 215
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
G + Q ++ ++ + L+ + L +++ ++
Sbjct: 216 GID----PKGVGTPQSKQAVKDGKDQLALTTTTDATLESFGLVVLDDDKKL--QNADNIL 269
Query: 228 TVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
VV + I+ L + + E+ + + +Q + V L+
Sbjct: 270 PVVNAKDAGDS-AIASALDKLNQTLTTDDLVELNRKVDAERQKEKDVAADYLKE 322
>gi|298251628|ref|ZP_06975431.1| Substrate-binding region of ABC-type glycine betaine transport
system [Ktedonobacter racemifer DSM 44963]
gi|297546220|gb|EFH80088.1| Substrate-binding region of ABC-type glycine betaine transport
system [Ktedonobacter racemifer DSM 44963]
Length = 315
Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/287 (10%), Positives = 85/287 (29%), Gaps = 35/287 (12%)
Query: 18 YARDADSCTPVRFADTGWTDIAATTAMTSVIL-EEILGYKTNIKLLAVPVTFRSLKNKGI 76
+ + A + M +++L +E L + F+++ I
Sbjct: 33 SSYSGSFKGQLTVASKLDIESQLLAKMYTLLLRKEGFQINEKPALGNSTIIFQAITYDSI 92
Query: 77 DIFMGYWYPS---------------LEKFIAPYLEEGSIKLVAE-NLQGAKYMLAVNDVG 120
D++ + + + ++ + + L Y
Sbjct: 93 DLYPEFTGTGLNRLHIPSTYNPLKDYQMVKDDFKKKYKLTWLDPTLLLNDGYTFCTMKEN 152
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ I+ ++ + + + K + + F+ + + +
Sbjct: 153 AQM--LGLVSISDIVPKVSQLTLTTPS--DATPFVDGLKRVYKITTRSFK---SVKTIDY 205
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ +N + + + +L + +GF + +VRS+ L + P+
Sbjct: 206 ALGFEAVKNGKAQITVCYSTDANVPQSGFIFLKD--DKNGFPPSHPAPLVRSNILQRYPD 263
Query: 241 ISRLLKNI--KFSVALENEMMKLILNNKQDRQF-------VGRTMLR 278
ISR+L + + + + ++ + K + V L+
Sbjct: 264 ISRILNPLAPRLTTDVSIQLQIQVTQKKNEGASVFRAVTLVATDFLK 310
>gi|162148719|ref|YP_001603180.1| glycine/betaine ABC transporter [Gluconacetobacter diazotrophicus
PAl 5]
gi|161787296|emb|CAP56890.1| putative ABC-type proline/glycine betaine transport protein
[Gluconacetobacter diazotrophicus PAl 5]
Length = 270
Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/264 (11%), Positives = 69/264 (26%), Gaps = 10/264 (3%)
Query: 14 FSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKN 73
+ T V AA A +LE + ++
Sbjct: 8 AGTTPNTGRGDMTTVTLGHPDTILHAAAAAAVVRVLEA-YEMEVEYVTGTRNDLSAAMAA 66
Query: 74 KGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAK 133
GID+F+ W P ++ L + A+ + + + D+A
Sbjct: 67 GGIDLFVSAWLPDIDPDWLAPALGMEAFG---GLYKPVFGWALPEGSA-PYVVTIADLAT 122
Query: 134 YKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPA 193
+ I E E + + + GF L + +F +
Sbjct: 123 DDGTVSRNIVTPESVIER---VRQGVAAYGLTECGFTLDARPDEDAFQHAAQAIETGEAT 179
Query: 194 VFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKF-SV 252
+ W+PH ++ + L + GE ++R+ + + +
Sbjct: 180 ILPLWQPHFLHHGGRLRLLDDP-KAGLGGEQQARLLLRTAARETLDSDLLDELDELTLGN 238
Query: 253 ALENEMMKLILNNKQDRQFVGRTM 276
+ + + +
Sbjct: 239 KVVSALDYAMRREGMSADEAAEAW 262
>gi|115673158|ref|XP_796602.2| PREDICTED: similar to tyrosine protein kinase [Strongylocentrotus
purpuratus]
gi|115941513|ref|XP_001182222.1| PREDICTED: similar to tyrosine protein kinase [Strongylocentrotus
purpuratus]
gi|238005554|tpg|DAA06500.1| TPA_inf: venus kinase receptor [Strongylocentrotus purpuratus]
Length = 1566
Score = 68.3 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 42/362 (11%), Positives = 90/362 (24%), Gaps = 101/362 (27%)
Query: 27 PVRFA--DTGW-TDIAATTAMTSVILEEILGY-KTNIKLLAVPVTFRSLKNKG------- 75
PV + W A T + ++L+E++GY I + V S
Sbjct: 131 PVVLGGSTSSWRPSQAFTNQVLKILLQEVMGYSNVTIAMDDTKVISTSQSVSQITGCFNA 190
Query: 76 ------------IDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND----- 118
I W + P++E I + A++ V+
Sbjct: 191 MCEEKSAQTIWSPSIDAEVWLDDPLS-LQPWMETQEIVDLGPIGIQARFGWYVSTALVTT 249
Query: 119 ----------------------------------VGFALGIKSYQDIAKYKKELGAKIYG 144
+ ++ +
Sbjct: 250 LYSVDGLIVDHWRVLQNSQMTAYLTISTNEIEVLTTESAATAMFKGQRYCDRPECTNGVY 309
Query: 145 IEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF------------SQIRRDQRNNIP 192
P N ++ + +L + + S +++ Q N P
Sbjct: 310 YPPWCTQNNSQCVILLADYPESNFDKLTDQIQSLGLMVGVAWIGPNLKSTVQQRQEKNQP 369
Query: 193 AVFLSWEPHPI--------------------------NSDLNIHYLPGGEEISGFGEASV 226
+F W P + N + + G F +V
Sbjct: 370 TLFFGWTPDDLTSSGAFSRVAFPSCQENAAEDNPASLNCLHVVPDVDGATGGCDFPWQNV 429
Query: 227 YTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKN 286
V + P I LLK++ F+ + + +M ++ + ++ + +
Sbjct: 430 NKVAWRPLVVGAPYIYDLLKDVTFASSKMDGIMYSYYFSRLNMAEFACEWVQRNSGTWEP 489
Query: 287 WL 288
W+
Sbjct: 490 WI 491
>gi|318061586|ref|ZP_07980307.1| putative ABC transporter substrate-binding protein [Streptomyces
sp. SA3_actG]
gi|318077170|ref|ZP_07984502.1| putative ABC transporter substrate-binding protein [Streptomyces
sp. SA3_actF]
Length = 327
Score = 67.9 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/292 (10%), Positives = 84/292 (28%), Gaps = 37/292 (12%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFR-SLKN 73
S + + + +T+ + + +L + GY T++K + + L+
Sbjct: 40 SAAKSDGGGKKGSLVIGAARFTEAKVLAELYAGVLADA-GYSTSVKTVQNREVYEPELRK 98
Query: 74 KGIDIFMGYWYP-----------------------SLEKFIAPYLEEGSIKLVAENLQGA 110
ID+ Y + + E +K++
Sbjct: 99 GSIDVVPEYAATLAEWLNHAKNGENAKPVASSDVDATVAALRKLAEPQGLKVLDAGKAVD 158
Query: 111 KYMLAVNDVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
+ V +K+ D+ K K+++ I + + ++ G
Sbjct: 159 QNAFVVTKDFATEHKLKTLSDLGKSKEKV--TIAAGDECATRPFCAPGLKKTYGINVAGI 216
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV 229
+ Q ++ ++ + L+ + L +++ ++ V
Sbjct: 217 D----PKGVGTPQSKQAVKDGKDQLALTTTTDATLERYGLVVLDDDKKL--QNADNIIPV 270
Query: 230 VRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
V + I+ L + + E+ + + + + V L+
Sbjct: 271 VNAKDAGDS-AIASALNKLNETLTTDDLVELNRKVDAERLKEKDVAADYLKE 321
>gi|330994301|ref|ZP_08318229.1| putative ABC-type proline/glycine betaine transport protein
[Gluconacetobacter sp. SXCC-1]
gi|329758768|gb|EGG75284.1| putative ABC-type proline/glycine betaine transport protein
[Gluconacetobacter sp. SXCC-1]
Length = 249
Score = 67.9 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/230 (9%), Positives = 67/230 (29%), Gaps = 10/230 (4%)
Query: 48 ILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL 107
+LE + + ++ +D+F+ W P ++ ++ +
Sbjct: 21 VLEA-YDLEVEYVAASRAGMEAHMRQGDVDLFVSAWLPDVDAGFLAEGL--GMEAFGQLY 77
Query: 108 QGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
+ A + V + IA+ I + ++ +
Sbjct: 78 RPA-FGWCVPEAAA----TGITSIAELAAADCPVGREIVAPASVIDLVRQVVAAYNLTEA 132
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
G+ + + + + N++P + W+P ++ + L + G E
Sbjct: 133 GYTIAVRPDAEACDHAAQVLENSLPEIIPVWQPSFVHYGQRVVQLEDPKGACG-PEQDAR 191
Query: 228 TVVRSDY-LDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
++RS + ++ L + + + + + +
Sbjct: 192 ILLRSAIRAEMDQDLLDELDELTLGNKVVSALDHAMRTEGMSAEDAAEAW 241
>gi|312194000|ref|YP_004014061.1| glycine/betaine ABC transporter substrate-binding protein [Frankia
sp. EuI1c]
gi|311225336|gb|ADP78191.1| Substrate-binding region of ABC-type glycine betaine transport
system [Frankia sp. EuI1c]
Length = 309
Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 34/267 (12%), Positives = 71/267 (26%), Gaps = 28/267 (10%)
Query: 28 VRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGIDIFMGYWYP 85
+ +T+ A + + L G K + + V ++L++ ID Y
Sbjct: 48 LTIGSADFTESALLADIYADAL-AAKGVKITKKLNIGERSVYVKALQDGSIDFIPEYNGS 106
Query: 86 SLEKFIAPYLEEGSIKLVAENLQGAKYML------------AVNDVGFALGIKSYQDIAK 133
L + + ++ A L + IA
Sbjct: 107 ILAYLDPKATAKSTAEVTAALPAALGSKLTALTPATAQDSDTITVTKATADKYHLTSIAD 166
Query: 134 YKKELGAKIYGIE-PGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIP 192
+G I + + + F + AS + + + +N
Sbjct: 167 LTSVADKLTFGAPAAFQTRPDGIPALKSVYGVTFGNFTALSASGTVTVTSL----KNGTI 222
Query: 193 AVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KF 250
+ P + L + F +V VV P I + + K
Sbjct: 223 DGADIFSTDPSFASEGFVALADPKN--MFAAQNVTPVV--ATAKVTPTIKDTVNAVSAKL 278
Query: 251 SVALENEMMKLILNNKQDRQFVGRTML 277
+ A+ ++ + D V + L
Sbjct: 279 TTAILADLDAKVGTG--DPDAVAKQWL 303
>gi|255030494|ref|ZP_05302445.1| glycine betaine/carnitine/choline ABC transporter
(osmoprotectant-binding protein) [Listeria monocytogenes
LO28]
Length = 211
Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 19/186 (10%), Positives = 46/186 (24%), Gaps = 21/186 (11%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LAVPVTFRSLKNKGIDIF 79
S +R T+ + + ++E G K I + V +++ N +DI
Sbjct: 30 GSSKDTIRIGAMATTESQIVSNILKELIEHDTGLKVEIVNNLGSTIVQHQAMLNGDVDIT 89
Query: 80 MGYWY---------------PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
+ P E + G
Sbjct: 90 ATRYTGTDLVGPLGEEAIKDPEKALAAVKKGFEERFHQTWFDSYGFANTYVFMVRQDTAK 149
Query: 125 IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
+ ++ +K G++ + + + ++ ++ I
Sbjct: 150 KYNLNTVSDMRKVENELTAGVDNSWMEREGDGYKAFSKAYDIEFKKIFP----MQIGLIY 205
Query: 185 RDQRNN 190
+NN
Sbjct: 206 TALKNN 211
>gi|209545514|ref|YP_002277743.1| glycine betaine ABC transporter substrate binding protein
[Gluconacetobacter diazotrophicus PAl 5]
gi|209533191|gb|ACI53128.1| Substrate-binding region of ABC-type glycine betaine transport
system [Gluconacetobacter diazotrophicus PAl 5]
Length = 252
Score = 66.8 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 30/251 (11%), Positives = 68/251 (27%), Gaps = 10/251 (3%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPS 86
V AA A +LE + ++ GID+F+ W P
Sbjct: 3 TVTLGHPDTILHAAAAAAVVRVLEA-YEMEVEYVTGTRNDLSAAMAAGGIDLFVSAWLPD 61
Query: 87 LEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE 146
++ L + A+ + + + D+A + I E
Sbjct: 62 IDPDWLAPALGMEAFG---GLYKPVFGWALPEGSA-PHVVTIADLATDDGTVSRNIVTPE 117
Query: 147 PGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSD 206
E + + + GF L + +F + + W+PH ++
Sbjct: 118 SVIER---VRQGVAAYGLTECGFTLDARPDEDAFQHAAQAIETGEATILPLWQPHFLHHG 174
Query: 207 LNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKF-SVALENEMMKLILNN 265
+ L + GE ++R+ + + + + + + + +
Sbjct: 175 GRLRLLDDP-KAGLGGEQQARLLLRTAARETLDSDLLDELDELTLGNKVVSALDYAMRHE 233
Query: 266 KQDRQFVGRTM 276
Sbjct: 234 GMSADEAAEAW 244
>gi|330955313|gb|EGH55573.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae Cit 7]
Length = 75
Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 228 TVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
V +++ + P + + K + F + L N+ + + + +D + V L+ HPD+ K W
Sbjct: 3 IGVSAEFSKQYPELVSVFKGVDFPIDLLNKTLGEMSDKHEDAKVVAARFLKQHPDVWKAW 62
Query: 288 LIGVTTFDGQDPSRQLERFM 307
L D + ++ +
Sbjct: 63 LP-------ADVAERVSSSL 75
>gi|315925503|ref|ZP_07921713.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, membrane protein [Pseudoramibacter
alactolyticus ATCC 23263]
gi|315621044|gb|EFV01015.1| glycine betaine/carnitine/choline ABC superfamily ATP binding
cassette transporter, membrane protein [Pseudoramibacter
alactolyticus ATCC 23263]
Length = 446
Score = 66.4 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 22/232 (9%), Positives = 65/232 (28%), Gaps = 32/232 (13%)
Query: 1 MYKILAVCLFLTTFSISYA----RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
M ++++ L + ++ ++S + D +T+ M ++E
Sbjct: 199 MKRVISSILIVFVAFMATVPFQVAGSNSAGNLMLYDGDYTETQIMHHMIKHLVEGKTDLN 258
Query: 57 TNIKLLAVPVTFRSLKNK---GIDIFMGYWYPSLEKFIAPYL------------------ 95
I+ V D+ + Y L F+
Sbjct: 259 VTIQDQMSQVNNYKALIGKKHSCDMMISYDGTWLTTFLHKDPTDVPKGESLYQYTNQLGK 318
Query: 96 EEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRI 155
++ + ++ + Y +AV + + ++ +K +G E +
Sbjct: 319 KKEGLTMLGKLGFNNTYAIAVPRKLADKY--NLKKVSDLEKVAPELTFGAEHEFFTEEGS 376
Query: 156 LDMINNNKFSLKGFRLIEASELASFSQI-RRDQRNNIPAVFLSWEPHPINSD 206
+ ++ + L ++ + + V + +N +
Sbjct: 377 MK----YNPFVRFYNLKFKNQKSVDVSLKYSAIGKGEFDVTEVFATDGLNKN 424
>gi|254705399|ref|ZP_05167227.1| putative ABC transporter, periplasmic substrate-binding protein
[Brucella suis bv. 3 str. 686]
gi|261756114|ref|ZP_05999823.1| ABC transporter [Brucella suis bv. 3 str. 686]
gi|261745867|gb|EEY33793.1| ABC transporter [Brucella suis bv. 3 str. 686]
Length = 136
Score = 66.0 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 20/123 (16%), Positives = 41/123 (33%), Gaps = 5/123 (4%)
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
F+LK +LI S + + I N + + + + L +
Sbjct: 12 AYGFTLKPDQLITLSGGDTAATIAAAANQTNGANAAMVYGTDGGIAPSGLVVLED--DKH 69
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
++R + L K P I LLK + K + ++ + + + V L
Sbjct: 70 VQPVYQPAPIIREEVLKKDPKIEELLKPVFEKLDLTTLQDLNGRVQLGGEPAKAVAEDFL 129
Query: 278 RTH 280
+ +
Sbjct: 130 KKN 132
>gi|302521015|ref|ZP_07273357.1| amino acid ABC transporter amino acid-binding protein [Streptomyces
sp. SPB78]
gi|302429910|gb|EFL01726.1| amino acid ABC transporter amino acid-binding protein [Streptomyces
sp. SPB78]
Length = 328
Score = 66.0 bits (159), Expect = 7e-09, Method: Composition-based stats.
Identities = 29/285 (10%), Positives = 81/285 (28%), Gaps = 37/285 (12%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFR-SLKNKGIDIFM 80
+ +T+ + + +L + GY T++K + + L+ ID+
Sbjct: 48 GGKKGSLVIGAARFTEAKVLAELYAGVLADA-GYSTSVKTVQNREVYEPELRKGSIDVVP 106
Query: 81 GYWYP-----------------------SLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
Y + + E +K++ + V
Sbjct: 107 EYAATLAEWLNHAKNGENAKPVASSDIDATVAALRKLAEPQGLKVLDAGKAVDQNAFVVT 166
Query: 118 DVGF-ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+K+ D+ K K+++ I + + ++ G +
Sbjct: 167 KDFATEHKLKTLSDLGKSKEKV--TIAAGDECATRPFCAPGLKKTYGINVAGID----PK 220
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
Q ++ ++ + L+ + L +++ ++ VV +
Sbjct: 221 GVGTPQSKQAVKDGKDQLALTTTTDATLESYGLVVLDDDKKL--QNADNIIPVVNAKDAG 278
Query: 237 KCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
I+ L + + E+ + + + + V L+
Sbjct: 279 DS-AIASALNKLNETLTTDDLVELNRKVDAERLKEKDVAADYLKE 322
>gi|29833950|ref|NP_828584.1| amino acid ABC transporter amino acid-binding protein [Streptomyces
avermitilis MA-4680]
gi|29611075|dbj|BAC75119.1| putative ABC transporter substrate-binding protein [Streptomyces
avermitilis MA-4680]
Length = 311
Score = 65.6 bits (158), Expect = 9e-09, Method: Composition-based stats.
Identities = 30/286 (10%), Positives = 77/286 (26%), Gaps = 35/286 (12%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFR-SLKNKGIDI 78
+ G+T+ M +++LE GYKT++ +A + +L++ ID+
Sbjct: 30 APPGDSRHLTIGSAGFTESDLLAQMYALLLERA-GYKTSMLTVANRELYEPALESGQIDV 88
Query: 79 FMGY-----------------------WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
Y + + + ++ + A
Sbjct: 89 VPEYAATFADWLNAKTHGTDAPAVGSPDQNATMSALRKLAAPRGLTVLDAGRAVDQNAFA 148
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
V G E + + + + +
Sbjct: 149 VTKAYARQHHLKTLSDLGGSGLKVRLAAGDE---CVQRPYCEPGLKKTYGIDITAVDP-- 203
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYL 235
+ +Q +R ++ + L+ + + L + S+ VV
Sbjct: 204 KGVGTTQAKRAVQSGQDQMVLTTTTDATLDEFGLVLLAD--DRHLQNADSIVPVVNRAQA 261
Query: 236 DKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++ L + + M + + + ++ + V R+ L
Sbjct: 262 GSE-RVTGALDRLNDVLTTGDLAAMNQQVDSWRRLPKDVARSYLTE 306
>gi|298527826|ref|ZP_07015230.1| Substrate-binding region of ABC-type glycine betaine transport
system [Desulfonatronospira thiodismutans ASO3-1]
gi|298511478|gb|EFI35380.1| Substrate-binding region of ABC-type glycine betaine transport
system [Desulfonatronospira thiodismutans ASO3-1]
Length = 311
Score = 65.6 bits (158), Expect = 9e-09, Method: Composition-based stats.
Identities = 14/143 (9%), Positives = 46/143 (32%), Gaps = 10/143 (6%)
Query: 137 ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFL 196
E K+ + + + + + F +++ + + V +
Sbjct: 30 EAKLKLASSAEWTQRSDGLPNFQEHYGFEFPELAVVD------LGLAYQAVGEGLAHVGI 83
Query: 197 SWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVAL 254
++ L + + F + +VR D L+ P + ++++ + +
Sbjct: 84 GDATEGRIVKYDLVVLED--DKAFFPAYNPAPLVRKDILETYPELEKIMQELSSRLDLKT 141
Query: 255 ENEMMKLILNNKQDRQFVGRTML 277
+ + K + + + + R L
Sbjct: 142 LSMLNKKVSIDNEMPRDAARYFL 164
Score = 45.6 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 3/73 (4%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIKLLAVPVTFRSLKNKGIDI 78
+ + +T+ +T +LE+ GYK L V +L + IDI
Sbjct: 176 EQKDAGEIVVGGKTFTEALTLGYLTRYLLEDR-GYKVVDETGLGETAVITPALFSGQIDI 234
Query: 79 FMGYWYPSLEKFI 91
+ Y L +
Sbjct: 235 YWEYTGTGLMNVM 247
>gi|320163308|gb|EFW40207.1| hypothetical protein CAOG_00732 [Capsaspora owczarzaki ATCC 30864]
Length = 766
Score = 65.2 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 51/405 (12%), Positives = 104/405 (25%), Gaps = 111/405 (27%)
Query: 4 ILAVCLFLTTFSISYARD--ADSC--------TPVRFADTGWTDIAATTAMTSVILEEIL 53
+L+ C+ L S DS P+R W + ++LEE L
Sbjct: 6 VLSACVALLLIVPSAVSVCFPDSERRVLRTDLEPIRLGQGDWNGARVNNLVAKILLEEKL 65
Query: 54 GYKTNIKLLAVPVT--FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAK 111
G +I + T F + +D +M W ++E +A Y+ GS++ V +
Sbjct: 66 GIPASIIDIGSDDTVVFEMMDRGDLDAYMELW--AMEDVLAHYVARGSVQYVGPLGVIGR 123
Query: 112 YMLAVNDVGFA----LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
Y + D + A+ + + + + + L
Sbjct: 124 YGWYIPDYVAELSRSMTQYDAYYFAETVAIFQLPVINSSTTSVSDSTSPLTVAESVEDLL 183
Query: 168 GFRL-IEASELASFSQIRRD-------------QRNNIPAVFLSWEPHPINSDLNIHYLP 213
A+ A+ + N + W P S ++ +
Sbjct: 184 ASDTCNPANSSATLQACYDALAILVDQVRELSRLQENNTNLITFWTAPPSWSPIDATIVR 243
Query: 214 G---GEEISGFG---------------EASVYTVVRS----------------------- 232
++ +V R
Sbjct: 244 NLELPMNVTEIPMLPEDNGDVEAAMVRNMAVAYAARKPFMMQFYVPHPVFSPLSGIGLKR 303
Query: 233 ----DYLDKCPNIS---------RLLKNIKFS--------------------VALENEMM 259
DY + C + +LK + ++ + +N +
Sbjct: 304 VQLPDYSEDCNALGDGYNCDYESDILKKLAWTGLKRKNSVAHAFISQFSYTALDQQNIVA 363
Query: 260 KLILNNKQDRQFVGRTMLRTHPDLLKNWLIG----VTTFDGQDPS 300
L+ +N + L+ + L + L VT +
Sbjct: 364 ALVYHN-ATLEDAACDWLKDNRALWERGLPDPNTLVTPSTAAPGA 407
>gi|294632645|ref|ZP_06711205.1| amino acid ABC transporter amino acid-binding protein [Streptomyces
sp. e14]
gi|292835978|gb|EFF94327.1| amino acid ABC transporter amino acid-binding protein [Streptomyces
sp. e14]
Length = 318
Score = 65.2 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/286 (10%), Positives = 79/286 (27%), Gaps = 35/286 (12%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFR-SLKNKGIDI 78
+ G+T+ M +++L++ G+ T + +A + +L++ ID+
Sbjct: 30 APPGDSRRLTIGSAGFTESDLLAQMYALLLKQA-GHDTELITVANRELYEPALESGRIDV 88
Query: 79 FMGYWYP-----------------------SLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
Y + + + ++ + A
Sbjct: 89 VPEYAATLADWLNAKAHGPDAPPAGSPDLAATMSALRRLAAPRGLTVLDPGRAVDQNAFA 148
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
V+ G E ++ + + ++ +
Sbjct: 149 VSAAYAREHRLKTLSDLGASGLKVRLAAGDE---CVSRPYCEPGLRTTYGIRITGIDPKG 205
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYL 235
+ + ++ R+ + L+ + L + V VV
Sbjct: 206 VGTTPA--KQAVRSGRDQMVLTTTTDATLDAFGLVVLAD--DKHLQNADYVVPVVNRARA 261
Query: 236 DKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
P ++R+L + + A M + + + ++ V R L+
Sbjct: 262 G-GPGVTRVLDRLNKVLTTADLASMNRQVDSWRRLPADVPRAYLKD 306
>gi|108800940|ref|YP_641137.1| substrate-binding region of ABC-type glycine betaine transport
system [Mycobacterium sp. MCS]
gi|119870080|ref|YP_940032.1| substrate-binding region of ABC-type glycine betaine transport
system [Mycobacterium sp. KMS]
gi|126436565|ref|YP_001072256.1| substrate-binding region of ABC-type glycine betaine transport
system [Mycobacterium sp. JLS]
gi|108771359|gb|ABG10081.1| Substrate-binding region of ABC-type glycine betaine transport
system [Mycobacterium sp. MCS]
gi|119696169|gb|ABL93242.1| Substrate-binding region of ABC-type glycine betaine transport
system [Mycobacterium sp. KMS]
gi|126236365|gb|ABN99765.1| Substrate-binding region of ABC-type glycine betaine transport
system [Mycobacterium sp. JLS]
Length = 276
Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/287 (9%), Positives = 62/287 (21%), Gaps = 20/287 (6%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEE-ILGYKTNI 59
M ++L + + + + T + + L G +
Sbjct: 1 MRRLLIALCAVALTACGA---PQAGPSLTIGSAQDDASLVTAHLYAAALRHYGTGTRVEP 57
Query: 60 KLLAVPVTFRS---LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ + + + P + + + E + Y A
Sbjct: 58 TADPLAALDAGEVAVVPGLTGRLLDRFQPEATARADEQVYRDMVSALPEGIAAGDYTTAA 117
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
D +S + L E + L R
Sbjct: 118 EDKPALAVTESTVAELGGQDLLAVVRNCGEVRPGRVRGARTPATIGTCRLPAPRDFP--- 174
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
+ + + +W + E +V + R + L
Sbjct: 175 --DAAALVAAVKTGQVDA--AWTTTASPGIPPDLVVLADSTSLVRAE-NVVPLYRRNTLG 229
Query: 237 KCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRTHP 281
+ ++ L + A +M + D V L HP
Sbjct: 230 ESQVLA--LNEVAGVLDTAALADMRARVRA-GDDPAVVAGEWLAEHP 273
>gi|333025302|ref|ZP_08453366.1| putative ABC transporter substrate-binding protein [Streptomyces
sp. Tu6071]
gi|332745154|gb|EGJ75595.1| putative ABC transporter substrate-binding protein [Streptomyces
sp. Tu6071]
Length = 334
Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/284 (9%), Positives = 73/284 (25%), Gaps = 35/284 (12%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFR-SLKNKGIDIFM 80
+ +T+ + + +L + GY T++K + + L+ ID+
Sbjct: 54 GGKKGSLVIGAARFTEAKVLAELYAGVLADA-GYSTSVKTVQNREVYEPELRKGSIDVVP 112
Query: 81 GYWYP-----------------------SLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
Y + + E +K++ + V
Sbjct: 113 EYAATLAEWLNHAKNGENAKPVASSDVDATVAALRKLAEPQGLKVLDAGKAVDQNAFVVT 172
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
KE G E + + + + +
Sbjct: 173 KDFATEHKLKTLSDLGKSKEKVTVAAGDE---CATRPFCAPGLKKTYGINVAGIDP--KG 227
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDK 237
Q ++ ++ + L+ + L +++ ++ VV +
Sbjct: 228 VGTPQSKQAVKDGKDQLALTTTTDATLESYGLVVLDDDKKL--QNADNIIPVVNAKDAGD 285
Query: 238 CPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
I+ L + + E+ + + + + V L+
Sbjct: 286 S-AIASALNKLNETLTTDDLVELNRKVDAERLKEKDVAADYLKE 328
>gi|297626807|ref|YP_003688570.1| ABC transporter glycine betaine [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
gi|296922572|emb|CBL57145.1| ABC transporter glycine betaine ? [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
Length = 299
Score = 64.5 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/296 (10%), Positives = 67/296 (22%), Gaps = 28/296 (9%)
Query: 4 ILAVCLFLTTFSIS-----YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
+L T + S A + S T + + + +LE G
Sbjct: 8 VLGAIGLATLAACSRNDPIGASSSASRTGLVVGSQQYYSNEIIAECYAQVLEAS-GIAVT 66
Query: 59 IKL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ V + + ID+ Y L+ F + ++ L V
Sbjct: 67 RQFEIGQREVYIDEMTSGKIDLIPEYSGNLLQYFNKDTQVTDRDAVREAVVKALPASLHV 126
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGI-------------EPGNEGNQRILDMINNNK 163
D A SY +E G +
Sbjct: 127 LDQADAGDQDSYTVTRASAQEHSMSSIGDLAALGTTITVAANSEFATRPYGPTGLKRLYG 186
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+ E + + + + P + ++ L + +
Sbjct: 187 VDAT----VLGVEDSGGPLTVKALLDGKVQAADIYTADPSIASNDLVVLSDPKHLIL--A 240
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+V + + + + + + + + + R LR
Sbjct: 241 QNVTPLASARVDAAAAAAINKVSA-QLGQSELQSLNSQSVTKQLKAADIAREWLRA 295
>gi|225175726|ref|ZP_03729719.1| Substrate-binding region of ABC-type glycine betaine transport
system [Dethiobacter alkaliphilus AHT 1]
gi|225168650|gb|EEG77451.1| Substrate-binding region of ABC-type glycine betaine transport
system [Dethiobacter alkaliphilus AHT 1]
Length = 309
Score = 63.7 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 18/163 (11%), Positives = 44/163 (26%), Gaps = 19/163 (11%)
Query: 141 KIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEP 200
+ + + + + F + F + + +
Sbjct: 31 RFATYHDFIISEEGLPALQESYGFEF------DVVYDLVFGLTHEALYHGDVDAAMGYAT 84
Query: 201 HPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEM 258
+L++ L + S F + V+R + L + P I ++ I + +
Sbjct: 85 DGKIQELDLVRLTD--DKSFFSVYNPAPVIRRETLQEHPQIEEIMAAISAQLDTDTMINL 142
Query: 259 MKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSR 301
L + + R L+ G + +GQ
Sbjct: 143 NYLADIKEYPHSEIARDWLKQ---------EGFLSGEGQPALD 176
Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 19/140 (13%), Positives = 36/140 (25%), Gaps = 4/140 (2%)
Query: 13 TFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPVTFRS 70
F + A PV +T+ +T + LE G L P +
Sbjct: 165 GFLSGEGQPALDTEPVIIGAKPFTEQQTLAQITILALEHA-GIPVEDRTDLGDTPQNRNA 223
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLV-AENLQGAKYMLAVNDVGFALGIKSYQ 129
L I ++ Y + + +L + A+ L + +
Sbjct: 224 LLTGEIHLYWEYTGTAWWEIFEKEDPLPDHELYQRIAKKDAENDLVWLEPAPLKDSYAIL 283
Query: 130 DIAKYKKELGAKIYGIEPGN 149
+ +EL
Sbjct: 284 MQEERARELEITTISDLALW 303
>gi|330956132|gb|EGH56392.1| substrate-binding region of ABC-type glycine betaine transport
system [Pseudomonas syringae Cit 7]
Length = 83
Score = 63.3 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS--GFGEASVYTVVRSDYLDKC 238
+++ R+ + VFL W PHP+N ++ + YL G ++ G A+V+TV Y ++C
Sbjct: 1 AEVNRNVKKKAFVVFLGWTPHPMNVNVAMTYLNGSDDALGPNEGMATVWTVTSPTYAEQC 60
Query: 239 PNISRLLKNIKFSVALENEMM 259
PN+ RLL N+ F+ A E+ MM
Sbjct: 61 PNVHRLLTNLTFTAADESRMM 81
>gi|302556246|ref|ZP_07308588.1| ABC transporter substrate-binding protein [Streptomyces
viridochromogenes DSM 40736]
gi|302473864|gb|EFL36957.1| ABC transporter substrate-binding protein [Streptomyces
viridochromogenes DSM 40736]
Length = 123
Score = 62.9 bits (151), Expect = 6e-08, Method: Composition-based stats.
Identities = 13/125 (10%), Positives = 35/125 (28%), Gaps = 8/125 (6%)
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE 217
M + + ++ ++ + V + D + L +
Sbjct: 1 MGLKDVYGVEFKEFKSLDSSGPL--VKGALKKGDVDVANLFTTDTDIQDNHWVVLSDPKN 58
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRT 275
+ V ++ D + + L + + A E+ + + +K+D V
Sbjct: 59 L--IPGQHVVPLIADRKADS--RVRKALARLGNVLTTAQLTELNRQVDKDKKDPSDVADA 114
Query: 276 MLRTH 280
H
Sbjct: 115 YAEQH 119
>gi|320170579|gb|EFW47478.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 747
Score = 62.9 bits (151), Expect = 6e-08, Method: Composition-based stats.
Identities = 18/182 (9%), Positives = 46/182 (25%), Gaps = 22/182 (12%)
Query: 141 KIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR----DQRNNIPAVFL 196
+ P + F+ ++ S I R P +
Sbjct: 213 TFWTPPPYWLPLDETIIRNLGLPFNATVIPMLPEEADDVESAIVRNIHEAYAARKPFITY 272
Query: 197 SWEPHPINSDLNIH--------------YLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
++PH I S ++ G + V V + K
Sbjct: 273 FYKPHSIFSSISGVGLRRVTLPEYTEVCATLGDGYNCDYPAEVVKKVAWAGLKQKNSVAY 332
Query: 243 RLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL----IGVTTFDGQD 298
+ ++ + +++ + + + L + + ++ L VT +
Sbjct: 333 SFVSQFSYTEYAQQDIVAASVYQNKTLEEATCAWLLNNRAVWESLLPDPDSLVTPTETAP 392
Query: 299 PS 300
+
Sbjct: 393 AA 394
Score = 52.9 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 33/269 (12%), Positives = 72/269 (26%), Gaps = 46/269 (17%)
Query: 26 TPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL---AVPVTFRSLKNKGIDIFMGY 82
P+R A W + +++LEE LG I L + L +D +M
Sbjct: 13 EPIRLAYGSWDGAIVDNILATILLEEKLGIPAEIIDLAGISDENVIEKLGLGEVDAYMEL 72
Query: 83 WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA----------------LGIK 126
W L+ + Y+ +++ + A+ + D +
Sbjct: 73 WG--LDDVLDDYIALKTVQNLGPLGFVARLGWYIPDYVANISRSMTSYDASNISRSMTSY 130
Query: 127 SYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRD 186
A+ + + L + ++ +L ++ A+
Sbjct: 131 DAYYFAETVEIFQRETINSSATTGDTLTSLSVADSVDDTLNSDVCNPSNGSATLQDCHDA 190
Query: 187 -------------QRNNIPAVFLSWEPHPINSDLNIHYLPG---GEEISGFG-------- 222
+ N + W P P L+ + +
Sbjct: 191 LSALVEQVRETYRLQENNTQLITFWTPPPYWLPLDETIIRNLGLPFNATVIPMLPEEADD 250
Query: 223 -EASVYTVVRSDYLDKCPNISRLLKNIKF 250
E+++ + Y + P I+ K
Sbjct: 251 VESAIVRNIHEAYAARKPFITYFYKPHSI 279
>gi|301385664|ref|ZP_07234082.1| glycine betaine transporter periplasmic subunit [Pseudomonas
syringae pv. tomato Max13]
Length = 130
Score = 62.5 bits (150), Expect = 7e-08, Method: Composition-based stats.
Identities = 15/109 (13%), Positives = 33/109 (30%), Gaps = 3/109 (2%)
Query: 189 NNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI 248
V+L+ + N + GF +V V+ ++ +K P + L +
Sbjct: 19 EGRDVVWLTVPKTDLPGGKNDVDTTYKGKNLGFAVDTVRAVLNKEFAEKNPVAVKFLSEM 78
Query: 249 KFSVALENEMMKLILNNKQDRQFV---GRTMLRTHPDLLKNWLIGVTTF 294
+ + E+ + N + + + H WL
Sbjct: 79 QITTDDESAQNLKMHNGENSAADIKRHAAEWIAAHRAAYDGWLADARAA 127
>gi|167841969|ref|ZP_02468653.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia
thailandensis MSMB43]
Length = 53
Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 258 MMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
M+ +L +K+ + LR +P L+ WL GVTT +G + ++
Sbjct: 1 MIAAMLQDKRSAVDAAQHALRANPSLVDAWLDGVTTANGAPGLPAVRAALD 51
>gi|301099269|ref|XP_002898726.1| transmembrane protein, putative [Phytophthora infestans T30-4]
gi|262104799|gb|EEY62851.1| transmembrane protein, putative [Phytophthora infestans T30-4]
Length = 690
Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 45/375 (12%), Positives = 92/375 (24%), Gaps = 97/375 (25%)
Query: 8 CLFLTTFSISYARDADSC------TPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
C+ F +DAD + W A T + +++ EE+ GYK +I
Sbjct: 49 CMTSDAFFYGANQDADGKNRGEVQGTLVLDLCAWDTHALATMVLAIMAEEVSGYKVSINK 108
Query: 62 L----AVPVTFRSLKNKG---IDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
+ S+ I + + W S + Y E ++ G +
Sbjct: 109 GGAGVDITERMSSVGTGMCTPIHLNVEVWTSSTLSDLRVYFNES-YQVGGVGYFGLSGVY 167
Query: 115 AVNDVGFALGIKSYQDIAKYKKEL----------------------GAKIYGIEPGNEGN 152
+ + + K G G+
Sbjct: 168 TTHQFVQDGMKATPPYFPDFWKHYKTSEALIDALNVVSFKSTSKYYPPVETTCADGIMGS 227
Query: 153 QRILDMINN------------------NKFSLKGFRLIEAS-----------ELASFSQI 183
+ + + F+ + +
Sbjct: 228 KDNCERTEACTQYESNGKTCLVLALMVPDYDQGYFQAVFDNLDVPAYFCFIAYDGVNQFA 287
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLP---------------GGEEISGFGEASVYT 228
+++ P F +EP + + G +GFG +
Sbjct: 288 ADAAKSSDPVFFYHYEPDLFHVTNKGKFDRVALPRTDLERVKLATGDYGENGFGAKTSNP 347
Query: 229 V-------VRSDYL----DKCPNISRLLKNIKFSVALENEMM--KLILNNKQDRQ---FV 272
V S + P I L + S N ++ I ++ D +
Sbjct: 348 VDVDYPSLALSKFAASVVKDLP-IGSLFSKLTLSDTDINALLSEYSIAMSRTDPEPYFRA 406
Query: 273 GRTMLRTHPDLLKNW 287
++T+ D ++W
Sbjct: 407 ACNWVKTNYDTWRDW 421
>gi|210610119|ref|ZP_03288281.1| hypothetical protein CLONEX_00467 [Clostridium nexile DSM 1787]
gi|210152631|gb|EEA83637.1| hypothetical protein CLONEX_00467 [Clostridium nexile DSM 1787]
Length = 284
Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 11/92 (11%), Positives = 28/92 (30%), Gaps = 3/92 (3%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--- 61
+ VCL +I + + A T+ M +++E+ +
Sbjct: 155 IVVCLLCLCMAIGTLFPVNRQDTIHIATKPMTEQYVLGEMLDILIEQDTDLNVELTQGVG 214
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP 93
++++ DI+ Y + +
Sbjct: 215 GGTSNIKPAMESGEFDIYPEYTGTAWNMVLKK 246
>gi|111022968|ref|YP_705940.1| amino acid ABC transporter substrate-binding protein [Rhodococcus
jostii RHA1]
gi|110822498|gb|ABG97782.1| probable ABC amino acid transporter, substrate binding component
[Rhodococcus jostii RHA1]
Length = 342
Score = 60.6 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/274 (10%), Positives = 68/274 (24%), Gaps = 18/274 (6%)
Query: 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--LLAVPVTFRSLKNKGI 76
A + + + + L G L L +
Sbjct: 74 GSAAQGPGEIVVGAGDGAESRILAEIYAGAL-RSTGAPVTTDGGLGDRTAYLGQLDAGNV 132
Query: 77 DIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKK 136
+ + L + E + + L+++D A + ++
Sbjct: 133 TLVPEFTGRLLRYYDPESTETEQDDVFEALSKALPQGLSISDYAAAEDRSALAVTSQTSG 192
Query: 137 ELGAKIYG--IEPGNEGNQRILDMINNNKFSL-----KGFRLIEASELASFSQIRR-DQR 188
+L + + + A + A+ ++
Sbjct: 193 QLDLTTLDELAPSCSRSTAVLAPAFEADALPDLTGCTFAQTRTVADDAAAVGELAAPAST 252
Query: 189 NNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI 248
+ V P SD ++ L + F +V + R L + + L +
Sbjct: 253 DGAVRVAGVTTASPDVSDADLVLLAD--DEHVFTAQNVVPLFRIGTLTEAQ--LKALNVV 308
Query: 249 --KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ + A +M+ + D V R L H
Sbjct: 309 AGELTTADLADMIGQV-RGGADSADVARVWLDAH 341
>gi|321314607|ref|YP_004206894.1| aliphatic sulfonate ABC transporter binding lipoprotein [Bacillus
subtilis BSn5]
gi|320020881|gb|ADV95867.1| aliphatic sulfonate ABC transporter (binding lipoprotein) [Bacillus
subtilis BSn5]
Length = 332
Score = 60.6 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 40/293 (13%), Positives = 81/293 (27%), Gaps = 32/293 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSC-----TPVRFADTGWTDIAATTAMTSVILEEIL-- 53
M K L V + + + S +R E+
Sbjct: 1 MKKGLIVLVAVIFLLAGCGANGASGDHKQLKEIRIGIQQSLSPLLIAK-EKGWFEDAFEK 59
Query: 54 -GYKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAK 111
G K P F L +D P + A + +
Sbjct: 60 EGIKVKWVEFQSGPPQFEGLAAGKLDFSQVGNSPVIAGQAAGIDFK-------------E 106
Query: 112 YMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
L+ + + + + + K+L K + G+ G + ++ S +
Sbjct: 107 IGLSQDGLKANGILVNRNSGIQDVKDLKGKKIAVAKGSSGFDFLYKALDQVGLSANDVTI 166
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVR 231
I+ + N + WEP+ + S + +T+VR
Sbjct: 167 IQLQPD----EAASAFENGSVDAWSIWEPYLSLETMKHGAKILVNGESTDLYSPGFTLVR 222
Query: 232 SDYLDKCP-NISRLLKNIK----FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+ + ++ P + R LK + +E L + K + V +L+
Sbjct: 223 TKFSEEHPDEVVRFLKVFNKAVVWQKEHLDEAADLYSDIKDLDKKVVENVLKN 275
>gi|229488442|ref|ZP_04382308.1| substrate-binding region of ABC-type glycine betaine transport
system [Rhodococcus erythropolis SK121]
gi|229323946|gb|EEN89701.1| substrate-binding region of ABC-type glycine betaine transport
system [Rhodococcus erythropolis SK121]
Length = 366
Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 40/317 (12%), Positives = 83/317 (26%), Gaps = 42/317 (13%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDI--AATTAMTSVILEEILG-YKTN-IKL 61
+ L L S+ ++ S +R A + LE+ L Y K
Sbjct: 36 VLALVLGACSVDHSGQDSSKETIRIAYQSFPSGDLIVKNNRW---LEDALPEYNVKWTKF 92
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ + ID P AP + V +
Sbjct: 93 DSGADINTAFIAGEIDFGAIGSSPVARGLSAPLNIPYQVAFVLDVAGDN----------- 141
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
+ K +L K + + +L +N S +L++ AS +
Sbjct: 142 EALVARNATGIKTVADLRGKKVATAFASTAHYSLLAALNQAGLSADDVQLVDLQPQASLA 201
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYT-VVRSDYLDKCPN 240
+ +W P + L E++ G+ ++ VV + + P
Sbjct: 202 ----AWQRGDIDAVYTWLPTLDELRKDGTQLIASRELATAGKPTLDLGVVSTAFAKDHPE 257
Query: 241 ISRLLKNI------KFSVALENEMMKLILNNKQDRQFVGRT-----MLRTHPDLLKN--W 287
I + + + + ++ L P+ + + W
Sbjct: 258 IVDTWRQVQARALTTIATDPNAAAEAVAAQLGASKEDAAAQLKQGVFLT--PEQISSPEW 315
Query: 288 LIGVTTFDGQDPSRQLE 304
L +G + +
Sbjct: 316 L----GTEGAPGNLAVN 328
>gi|218508123|ref|ZP_03506001.1| glycine betaine ABC transporter, substrate binding protein
[Rhizobium etli Brasil 5]
Length = 159
Score = 60.2 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 38/121 (31%), Gaps = 5/121 (4%)
Query: 162 NKFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISG 220
F LK +++ S + + I+ N + + + L + +
Sbjct: 36 YGFQLKPDQMVVLSGGDTAATIKAAADQTNGVNTAMVYGTDGAIEAAELTVLEDDKGVQQ 95
Query: 221 FGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
+ ++R L P I +L I S ++ I + + + V L+
Sbjct: 96 --VYAPTPIIREAVLKANPKIEEILSPIFKSLSADELRKLNAKIQVDGEPAKSVAEAYLK 153
Query: 279 T 279
Sbjct: 154 E 154
>gi|226365474|ref|YP_002783257.1| ABC transporter substrate-binding protein [Rhodococcus opacus B4]
gi|226243964|dbj|BAH54312.1| putative ABC transporter substrate-binding protein [Rhodococcus
opacus B4]
Length = 315
Score = 60.2 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/274 (10%), Positives = 68/274 (24%), Gaps = 19/274 (6%)
Query: 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEE-ILGYKTNIKLLAVPVTFRSLKNKGID 77
+ + + + L T+ L L +
Sbjct: 48 GSAGQGPGEIVVGAGDGAESRVLAEIYAGALRSTGAPVTTDEGLGDRTAYLGQLDAGTVT 107
Query: 78 IFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKE 137
+ + L + E + + L+++D A + + +
Sbjct: 108 LVPEFTGRLLRYYDPESTETEQDDVFEALSKALPQGLSISDFAAAEDRSALAVTPQASER 167
Query: 138 LGAKIYGIEPGNEGN--QRILDMINNNKF-SLKGFRLIEASELASFSQIRR-----DQRN 189
LG + G + + + L G + +A + +
Sbjct: 168 LGLTTLDDLVPSCGRSTAVLAPSFDADTLAGLPGCTFAQTRRVADDAAAVGELAVPAPAD 227
Query: 190 NIPAV-FLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI 248
+ P + + ++ F +V + R L + + L +
Sbjct: 228 GAVVAGVTTASPDVA----DADLMLLSDDEHVFPAQNVVPLFRIGTLSEAQ--LKALNVV 281
Query: 249 --KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ + A +M+ + D V R L H
Sbjct: 282 AGELTTADLADMIGQV-RGGADSADVARVWLDAH 314
>gi|328887016|emb|CCA60255.1| L-proline glycine betaine binding ABC transporter protein ProX
[Streptomyces venezuelae ATCC 10712]
Length = 323
Score = 60.2 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 36/284 (12%), Positives = 84/284 (29%), Gaps = 25/284 (8%)
Query: 17 SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFR-SLKNKG 75
+ + G+T+ M +++LEE GY T I + + +L+
Sbjct: 38 AVTAPPGDSRQLTVGSAGFTESDLLAQMYALLLEEA-GYGTKILSVTNRELYEPALERGQ 96
Query: 76 IDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKY---------MLAVNDVGFALGIK 126
ID+ Y + A + + + +L L V D G A+
Sbjct: 97 IDVVPEYAATFADWLNAKAHGADAPTVGSPDLAATMTALRALAGPRGLTVLDAGRAVDQN 156
Query: 127 SYQDIAKYKKELGAKIY------GIEPGNEGNQRILDMINNNKFSLKGFRLIEA---SEL 177
++ A + E K G+ + + + + +
Sbjct: 157 AFAVTAAFAAEHRLKTLSDLGARGVPVRLAAGDECVRRPYCAPGLREVYGIDVTAVDPKG 216
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDK 237
+ ++ +N + L+ + + L + + VV
Sbjct: 217 VGTTPAKQAVQNGEDQMVLTTTTDATLDEFGLVLLADDRNL--QNADHIVPVVNRARAGS 274
Query: 238 CPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
++R L + + A + + + + ++ + V R L
Sbjct: 275 EG-VTRALSRLNTVLTTADLAMLNEQVDSWRRLPEDVARNYLAD 317
>gi|226308349|ref|YP_002768309.1| ABC transporter substrate-binding protein [Rhodococcus erythropolis
PR4]
gi|226187466|dbj|BAH35570.1| putative ABC transporter substrate-binding protein [Rhodococcus
erythropolis PR4]
Length = 335
Score = 59.9 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 40/317 (12%), Positives = 84/317 (26%), Gaps = 42/317 (13%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDI--AATTAMTSVILEEILG-YKTN-IKL 61
+ L L S+ ++ S +R A + LE+ L Y K
Sbjct: 5 VLALVLGACSVDHSGQDSSKETIRIAYQSFPSGDLIVKNNRW---LEDALPEYNVKWTKF 61
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ + ID P AP + V +
Sbjct: 62 DSGADINTAFIAGEIDFGAIGSSPVARGLSAPLNIPYQVAFVLDVAGDN----------- 110
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
+ K +L K + + +L +N S +L++ AS +
Sbjct: 111 EALVARNATGIKTVADLRGKKVATAFASTAHYSLLAALNQAGLSADDVQLVDLQPQASLA 170
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYT-VVRSDYLDKCPN 240
+ +W P + L E++ G+ ++ VV + + P
Sbjct: 171 ----AWQRGDIDAVYTWLPTLDELRKDGTQLIASRELATAGKPTLDLGVVSTAFAKDHPE 226
Query: 241 ISRLLKNI------KFSVALENEMMKLILNNKQDRQFVGRT-----MLRTHPDLLKN--W 287
I + + + + + ++ L P+ + + W
Sbjct: 227 IVDTWRKVQARALTTIATDPDAAAEAVAAQLGASKEDAAAQLKQGVFLT--PEQISSPEW 284
Query: 288 LIGVTTFDGQDPSRQLE 304
L +G + +
Sbjct: 285 L----GTEGAPGNLAVN 297
>gi|330470491|ref|YP_004408234.1| glycine betaine ABC transporter substrate-binding protein
[Verrucosispora maris AB-18-032]
gi|328813462|gb|AEB47634.1| substrate-binding region of abc-type glycine betaine transport
system [Verrucosispora maris AB-18-032]
Length = 314
Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats.
Identities = 22/220 (10%), Positives = 52/220 (23%), Gaps = 27/220 (12%)
Query: 10 FLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFR 69
F ++ + S + +T+ + + L GY+ ++ + +
Sbjct: 98 FSAANGLADGVEKGSGGKITVGAGNFTESEIIAELYKIQLTAA-GYQVTVQQIGNRELYE 156
Query: 70 -SLKNKGIDIFMGYWYPSLE----------------------KFIAPYLEEGSIKLVAEN 106
+L+ I + Y E + E+ +
Sbjct: 157 PALEKGEIQVVPEYAATMAEFLKGKTGGGSDPVSSPDVEKTVTALRGLGEQVGLSFGQPA 216
Query: 107 LQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSL 166
+ AV K A + G P + + + L
Sbjct: 217 PAQNQNAFAVTKEFAEKYGVRTLSELAAKCSGTATVLGGPPECQERPFCKPGLEQ-TYGL 275
Query: 167 KGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSD 206
+ + + RN +V L + +
Sbjct: 276 SVGSFSSLDQGGPLT--KTGLRNGTISVGLVFSTDAAYAT 313
Score = 42.1 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 4/67 (5%), Positives = 21/67 (31%), Gaps = 4/67 (5%)
Query: 216 EEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVG 273
++ + ++ + + P + L + ++ K + +++ Q
Sbjct: 38 DDKALQNADNIIPAINTKVA--TPQLVAALDKVSAVLDTPKLVQLNKAVDVDRKSAQAAA 95
Query: 274 RTMLRTH 280
+ +
Sbjct: 96 QEFSAAN 102
>gi|320166447|gb|EFW43346.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 586
Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats.
Identities = 17/164 (10%), Positives = 40/164 (24%), Gaps = 18/164 (10%)
Query: 141 KIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR----DQRNNIPAVFL 196
+ + F++ +I I R P +
Sbjct: 57 TFWTPPAYWLPLDATIARNLGLPFNVTDIPMIPEDGNDVEGAIVRNVHAAYAARKPFITY 116
Query: 197 SWEPHPINSDLNIH--------------YLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
++PH I S ++ G + V V + K
Sbjct: 117 FYKPHSIFSSISGVGLRRVSLPEYTEECAALGDGYNCDYPSEIVKKVAWAGLKRKNSVAH 176
Query: 243 RLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKN 286
L + FS + +++ + + + L + ++
Sbjct: 177 SFLSQLTFSEYAQQDIVAAYVYQNRTFEEATCAWLLDNRAAWES 220
>gi|58040463|ref|YP_192427.1| hypothetical protein GOX2035 [Gluconobacter oxydans 621H]
gi|58002877|gb|AAW61771.1| Hypothetical protein GOX2035 [Gluconobacter oxydans 621H]
Length = 241
Score = 59.9 bits (143), Expect = 5e-07, Method: Composition-based stats.
Identities = 28/235 (11%), Positives = 76/235 (32%), Gaps = 25/235 (10%)
Query: 45 TSVILEEILGYKTNIKLLA--VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKL 102
+ +LE Y+ I+ + +L+ +D+ + W+P ++
Sbjct: 21 VARVLEA---YEVEIEYVDLDPDDIEDALEGAEVDLLVSAWFPR-----DEKFAGPGRRV 72
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
+ + Q A++ +G + S ++ I + + +
Sbjct: 73 LGDLYQPVVSFAALSPLGAVGTLTS--------ADVDRIIVSDDSRQALEDALKQLPA-- 122
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG 222
L + E A ++ + + + ++ +PH + + + + G G
Sbjct: 123 ---LSVLPIESIGEGALIERLEKARDAGEKPLVVATQPHAVFHTDLLTVIEDPAHLLG-G 178
Query: 223 EASVYTVVRSDYLDKC-PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
E S ++R D + ++ L + + + + +I QD +
Sbjct: 179 EMSARMIMREDVARQADSDLLDELSEMMLGNRVMSALDYVISVEGQDPEGAAEAW 233
>gi|260776228|ref|ZP_05885123.1| L-proline glycine betaine binding ABC transporter protein proX
[Vibrio coralliilyticus ATCC BAA-450]
gi|260607451|gb|EEX33716.1| L-proline glycine betaine binding ABC transporter protein proX
[Vibrio coralliilyticus ATCC BAA-450]
Length = 197
Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats.
Identities = 12/158 (7%), Positives = 45/158 (28%), Gaps = 19/158 (12%)
Query: 148 GNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDL 207
G D +L ++ + A +I + ++ P + +W P+ + S
Sbjct: 32 FYTGPWEKPDNARIRALNLNFKVVVLPTGQAINQKIHQYVKDKKPLLIFNWTPNWVESVY 91
Query: 208 NIHYLPGGEEISG---------FGEA----------SVYTVVRSDYLDKCPNISRLLKNI 248
+ ++ + + + + + +++
Sbjct: 92 SGSFIEFPTYTHECEKDPSWGSNPKYLWDCGNPSGGWLKIAISNQLKSRSQCAYDVVQRF 151
Query: 249 KFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKN 286
+ + L+ D + +T + + + ++
Sbjct: 152 QLNNRDIALAATLVDVEHFDVKGAAKTWIERNSEYVEQ 189
>gi|23008775|ref|ZP_00050076.1| COG1732: Periplasmic glycine betaine/choline-binding (lipo)protein
of an ABC-type transport system (osmoprotectant binding
protein) [Magnetospirillum magnetotacticum MS-1]
Length = 91
Score = 59.5 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 13/86 (15%), Positives = 28/86 (32%), Gaps = 4/86 (4%)
Query: 194 VFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFS 251
+ + + L++ + + V+R+D LD+ P I R L + +
Sbjct: 1 AGMVYGTDGALAALDLTVMSDPKGAQI--VYEPAPVIRADTLDRYPQIRRALDPVFARLD 58
Query: 252 VALENEMMKLILNNKQDRQFVGRTML 277
++ I + V L
Sbjct: 59 AETLRQLNAAITVEGRTASAVAAEWL 84
>gi|296332305|ref|ZP_06874766.1| aliphatic sulfonate ABC transporter (binding lipoprotein) [Bacillus
subtilis subsp. spizizenii ATCC 6633]
gi|305673582|ref|YP_003865254.1| aliphatic sulfonate ABC transporter binding lipoprotein [Bacillus
subtilis subsp. spizizenii str. W23]
gi|296150223|gb|EFG91111.1| aliphatic sulfonate ABC transporter (binding lipoprotein) [Bacillus
subtilis subsp. spizizenii ATCC 6633]
gi|305411826|gb|ADM36945.1| aliphatic sulfonate ABC transporter (binding lipoprotein) [Bacillus
subtilis subsp. spizizenii str. W23]
Length = 332
Score = 59.1 bits (141), Expect = 8e-07, Method: Composition-based stats.
Identities = 41/293 (13%), Positives = 81/293 (27%), Gaps = 32/293 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSC-----TPVRFADTGWTDIAATTAMTSVILEEIL-- 53
M K L V + + + S +R EE
Sbjct: 1 MKKGLIVLIAVFFLLAGCGANGASSDNKQLKEIRIGIQQSLSPLLIAK-EKGWFEEAFEK 59
Query: 54 -GYKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAK 111
G K P F L +D P + A + +
Sbjct: 60 EGIKVKWVEFQSGPPQFEGLAADKLDFSQVGNSPVISGQAAGIDFK-------------E 106
Query: 112 YMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
L+ + + + + + K+L K + G+ G + ++ S +
Sbjct: 107 IGLSQDGLKANGILVNQNSGIQDVKDLKGKKIAVAKGSSGFDFLYKALDQVGLSANDVTI 166
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVR 231
I+ + N + WEP+ + S + +T+VR
Sbjct: 167 IQLQPD----EAASAFENGSVDAWSIWEPYLSLETIKHGAKILVNGESTDLYSPGFTLVR 222
Query: 232 SDYLDKCP-NISRLLKNIK----FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+ + ++ P + R LK + +E L + K + V +L+
Sbjct: 223 TKFAEEHPDEVVRFLKVFNKAVVWQKEHLDEAADLYADIKGLDKKVVENVLKN 275
>gi|291483331|dbj|BAI84406.1| aliphatic sulfonate ABC transporter, binding lipoprotein [Bacillus
subtilis subsp. natto BEST195]
Length = 332
Score = 59.1 bits (141), Expect = 9e-07, Method: Composition-based stats.
Identities = 40/293 (13%), Positives = 79/293 (26%), Gaps = 32/293 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSC-----TPVRFADTGWTDIAATTAMTSVILEEIL-- 53
M K L V + + + S +R E+
Sbjct: 1 MKKGLIVLVAVIFLLAGCGANGASGDHKQLKEIRIGIQQSLSPLLIAK-EKGWFEDAFEK 59
Query: 54 -GYKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAK 111
G K P F L +D P + A + +
Sbjct: 60 EGIKVKWVEFQSGPPQFEGLAADKLDFSQVGNSPVIAGQAAGIDFK-------------E 106
Query: 112 YMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
L+ + + + + + K L K + G+ G + ++ S +
Sbjct: 107 IGLSQDGLKANGILVNRNSGIQDVKGLKGKKIAVAKGSSGFDFLYKALDQVGLSANDVTI 166
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVR 231
I+ + N + WEP+ + S + +T+VR
Sbjct: 167 IQLQPD----EAASAFENGSVDAWSIWEPYLSLETMKHGAKILVNGESTDLYSPGFTLVR 222
Query: 232 SDYLDKCP-NISRLLKNIK----FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+ + ++ P + R LK + E L + K + V +L+
Sbjct: 223 TKFSEEHPDEVVRFLKVFNKAVVWQKEHLGEAADLYSDIKDLDKKVVENVLKN 275
>gi|213582207|ref|ZP_03364033.1| putative periplasmic protein [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
Length = 115
Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 17/108 (15%), Positives = 34/108 (31%), Gaps = 9/108 (8%)
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
Q+ + +++ + L + L + + + VVR L P I+
Sbjct: 15 AAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPKGV--QPIYAPAPVVRESVLQAYPQIAD 72
Query: 244 LLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
L+ + ++ I D + V LR K W+
Sbjct: 73 WLQPVFASLDEKTLQQLNARIAVEGLDAKKVAADYLRQ-----KGWVK 115
>gi|225574558|ref|ZP_03783168.1| hypothetical protein RUMHYD_02635 [Blautia hydrogenotrophica DSM
10507]
gi|225038225|gb|EEG48471.1| hypothetical protein RUMHYD_02635 [Blautia hydrogenotrophica DSM
10507]
Length = 341
Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 14/108 (12%), Positives = 33/108 (30%), Gaps = 2/108 (1%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL--LA 63
+ +F I ++ + +T+ + S +E+ + K
Sbjct: 234 LIVIFFVVSGIRSTMNSPQGDTITVGGKDYTEQRLLCELMSQAIEKETDLNVSRKSNLGG 293
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAK 111
V F ++K+ +D++M Y + + K K
Sbjct: 294 TQVVFNAVKSGEVDVYMEYIGTAYADTLGYEPISDVDKAYQTVKDEFK 341
>gi|320164317|gb|EFW41216.1| hypothetical protein CAOG_06348 [Capsaspora owczarzaki ATCC 30864]
Length = 751
Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/157 (14%), Positives = 53/157 (33%), Gaps = 12/157 (7%)
Query: 5 LAVCLFLTTFSISYARDADSCT-------PVRFADTGWTDIAATTAMTSVILEEILGYKT 57
L V + L + + + P++ W + + ++LEE LG
Sbjct: 9 LLVAITLAGTASAACFPPNERRALRTDLAPIQIVANAWNSSMISATIARIVLEEKLGLPA 68
Query: 58 NI--KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS-IKLVAENLQGAKYML 114
+ +F +L + D+ M + + I Y+ E + V + +
Sbjct: 69 QLYGMYGTYDESFAALSSGAGDLLMEAYPKYTQYLIDEYVTERRTVVYVGPSGIIGETGW 128
Query: 115 AVNDVGFALGIKSYQDIAKYKK--ELGAKIYGIEPGN 149
+ + + + + IA Y + + ++ I G
Sbjct: 129 YIPEYVWDVSTITDSYIAYYDERIQAMFRLNTIPVGF 165
Score = 49.4 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 11/123 (8%), Positives = 41/123 (33%), Gaps = 14/123 (11%)
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLP--------------GGEE 217
++ + A ++ P + +PH + +D++ L
Sbjct: 261 VDETMDAMVEVTKQSYIARKPFIQYWTKPHYVFADVSPARLHRVQLPEFDSTCNASSSAY 320
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTML 277
G+ + V ++ S K + + + ++ ++ ++ ++ N + + +
Sbjct: 321 RCGYEDQRVVKMMSSKLPSKNSVAADFVDHFSYTSQDQSNILGQMVFNGKSLEEATCEWV 380
Query: 278 RTH 280
+
Sbjct: 381 IAN 383
>gi|16077949|ref|NP_388764.1| aliphatic sulfonate ABC transporter binding lipoprotein [Bacillus
subtilis subsp. subtilis str. 168]
gi|221308722|ref|ZP_03590569.1| aliphatic sulfonate ABC transporter (binding lipoprotein) [Bacillus
subtilis subsp. subtilis str. 168]
gi|221313045|ref|ZP_03594850.1| aliphatic sulfonate ABC transporter (binding lipoprotein) [Bacillus
subtilis subsp. subtilis str. NCIB 3610]
gi|221317970|ref|ZP_03599264.1| aliphatic sulfonate ABC transporter (binding lipoprotein) [Bacillus
subtilis subsp. subtilis str. JH642]
gi|221322244|ref|ZP_03603538.1| aliphatic sulfonate ABC transporter (binding lipoprotein) [Bacillus
subtilis subsp. subtilis str. SMY]
gi|732409|sp|P40400|SSUA_BACSU RecName: Full=Putative aliphatic sulfonates-binding protein; Flags:
Precursor
gi|438472|gb|AAA64348.1| Likely N-terminal signal sequence, followed by lipoamide anchoring
site. No homologues in database.; putative [Bacillus
subtilis]
gi|1903039|emb|CAB07521.1| hypothetical 36.3 kd lipoprotein precursor [Bacillus subtilis
subsp. subtilis str. 168]
gi|2633207|emb|CAB12712.1| aliphatic sulfonate ABC transporter (binding lipoprotein) [Bacillus
subtilis subsp. subtilis str. 168]
Length = 332
Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 40/293 (13%), Positives = 80/293 (27%), Gaps = 32/293 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSC-----TPVRFADTGWTDIAATTAMTSVILEEIL-- 53
M K L V + + + S +R E+
Sbjct: 1 MKKGLIVLVAVIFLLAGCGANGASGDHKQLKEIRIGIQQSLSPLLIAK-EKGWFEDAFEK 59
Query: 54 -GYKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAK 111
G K P F L +D P + A + +
Sbjct: 60 EGIKVKWVEFQSGPPQFEGLAADKLDFSQVGNSPVIAGQAAGIDFK-------------E 106
Query: 112 YMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
L+ + + + + + K L K + G+ G + ++ S +
Sbjct: 107 IGLSQDGLKANGILVNQNSGIQDVKGLKGKKIAVAKGSSGFDFLYKALDQVGLSANDVTI 166
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVR 231
I+ + N + WEP+ + S + +T+VR
Sbjct: 167 IQLQPD----EAASAFENGSVDAWSIWEPYLSLETMKHGAKILVNGESTDLYSPGFTLVR 222
Query: 232 SDYLDKCP-NISRLLKNIK----FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+ + ++ P + R LK + +E L + K + V +L+
Sbjct: 223 TKFSEEHPDEVVRFLKVFNKAVVWQKEHLDEAADLYSDIKDLDKKVVENVLKN 275
>gi|224477720|ref|YP_002635326.1| hypothetical protein Sca_2238 [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222422327|emb|CAL29141.1| truncated putative glycine betaine/choline-binding lipoprotein
precursor (fragment 1) [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 223
Score = 58.3 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/211 (9%), Positives = 44/211 (20%), Gaps = 24/211 (11%)
Query: 7 VCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI----KLL 62
+ L+ + S V+ ++ M + +E K L
Sbjct: 14 STVVLSGCDLPGLGGGPS-KNVKITALATSESQIMAHMIRLQIEHDTHGKVKPSIINNLG 72
Query: 63 AVPVTFRSLKNKGIDIFMGYWY---------------PSLEKFIAPYLEEGSIKLVAENL 107
+ + +LK I + + + N
Sbjct: 73 SATIEHNTLKRGDAQISATRYTGTDLVGALNHDPITDTHKAMDVVQKGFKNKFDQTFFNT 132
Query: 108 QGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
G + A + ++ +K G + + K
Sbjct: 133 YGFENTFAFMVTQDVARKYHLEKVSDLEKHKDDLRLGTDSTWVKRAGDGYPAFTKAYGFK 192
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
+ + +N V L +
Sbjct: 193 FKTVRP----MQIGLVYDALKNKKLDVALGY 219
>gi|213022996|ref|ZP_03337443.1| putative periplasmic protein [Salmonella enterica subsp. enterica
serovar Typhi str. 404ty]
Length = 120
Score = 58.3 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/108 (15%), Positives = 34/108 (31%), Gaps = 9/108 (8%)
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
Q+ + +++ + L + L + + + VVR L P I+
Sbjct: 20 AAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPKGV--QPIYAPAPVVRESVLQAYPQIAD 77
Query: 244 LLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
L+ + ++ I D + V LR K W+
Sbjct: 78 WLQPVFASLDEKTLQQLNARIAVEGLDAKKVAADYLRQ-----KGWVK 120
>gi|238561089|ref|ZP_04609417.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia mallei
GB8 horse 4]
gi|238525025|gb|EEP88454.1| glycine betaine/L-proline ABC transporter, periplasmic glycine
betaine/L-proline-binding protein [Burkholderia mallei
GB8 horse 4]
Length = 39
Score = 57.9 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 272 VGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
L+ +P L WL GVTTFDG+ ++ ++
Sbjct: 1 AAAEWLKANPQSLDKWLAGVTTFDGKPGLPAVKHYL 36
>gi|229493732|ref|ZP_04387514.1| substrate-binding region of ABC-type glycine betaine transport
system [Rhodococcus erythropolis SK121]
gi|229319332|gb|EEN85171.1| substrate-binding region of ABC-type glycine betaine transport
system [Rhodococcus erythropolis SK121]
Length = 294
Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/285 (9%), Positives = 74/285 (25%), Gaps = 17/285 (5%)
Query: 4 ILAVCLFLTTFSISYA--------RDADSCTPVRFADTGWTDIAATTAMTSVILEE-ILG 54
+ L + A +A+S + A + + + S +L L
Sbjct: 10 TVVAALMVLPILSGCANGDSVVEGAEAESRDQIVVAADASVESSVFAEVYSTVLSSSGLS 69
Query: 55 YKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
+ + +L + + + L+ + + + + L
Sbjct: 70 ARVESVGGGRNQSLEALDAARVTLVPEFTGALLDHYDPSSPARKADDVFEALSRSLPEGL 129
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
+V+D ++ + + IE +++ +
Sbjct: 130 SVSDY-AMAEDRAVLALDTGYAQSLGAKT-IEAFAPSCAAATPLVSARFVEDGAVEQLAE 187
Query: 175 SELASFSQIRRDQRNNIPAV-FLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
F+ + + ++P + + + +V + R+
Sbjct: 188 GADCVFAGVDQATPADVPGAQVFGTTTLSALAQSDAVTVLADSN-HVLAAQNVVPLFRAG 246
Query: 234 YLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
L + L + + S M++ + K V RT
Sbjct: 247 ALGDS--AVKALSVVAGELSTTDLAAMIEQVRTGKASASEVARTW 289
>gi|226307614|ref|YP_002767574.1| ABC transporter substrate-binding protein [Rhodococcus erythropolis
PR4]
gi|226186731|dbj|BAH34835.1| putative ABC transporter substrate-binding protein [Rhodococcus
erythropolis PR4]
Length = 302
Score = 57.5 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/284 (9%), Positives = 73/284 (25%), Gaps = 15/284 (5%)
Query: 4 ILAVCLFLTTFSISYA--------RDADSCTPVRFADTGWTDIAATTAMTSVILEE-ILG 54
+ L + A A+S + A + + + S +L L
Sbjct: 18 TVVAALMVLPILSGCANGDSVVESAGAESRDQIVVAADASVESSVLAEVYSTVLSSSGLS 77
Query: 55 YKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
+ + +L + + + L+ + + + + L
Sbjct: 78 ARVESVGGGRTQSLEALDAARVTLVPEFTGALLDHYDPSSPARKADDVFEALSRSLPEGL 137
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
+V+D ++ + + IE +++ +
Sbjct: 138 SVSDY-AMAEDRAVLALDTAYAQSLGAKT-IEAFAPSCAAATPLVSVRFVEDGAVEQLAE 195
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDY 234
F+ + + ++P + + + +V + R+
Sbjct: 196 GAECVFAGVDQATPADVPGAQVFGTTTLSALAQSGAVTVLADSNHVLAAQNVVPLFRAGA 255
Query: 235 LDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTM 276
L + L + + S M++ + K V RT
Sbjct: 256 LGDS--AVKALSVVAGELSTTDLAAMIEQVRTGKASASEVARTW 297
>gi|312138894|ref|YP_004006230.1| glycine/betaine ABC transporter substrate-binding protein
[Rhodococcus equi 103S]
gi|311888233|emb|CBH47545.1| putative ABC-type glycine betaine transporter substrate binding
lipoprotein [Rhodococcus equi 103S]
Length = 308
Score = 57.5 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/293 (10%), Positives = 73/293 (24%), Gaps = 23/293 (7%)
Query: 4 ILAVCLFLTTFSISYAR--DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
++ + T + + + V + + + L G T + L
Sbjct: 22 VVPAVVIATACGVDTSSRTGGPTAPTVVIGAADTVESELVARLYAGAL-GASGRSTELVL 80
Query: 62 LAVPVT--FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+L + + + L +F + + + L+V++
Sbjct: 81 GLGDQADRLAALDADRVSLVPEHTGRLLHRFDPTADATEAEDVYDALSRSLPQGLSVSEY 140
Query: 120 GFALGIKSYQDIAKYKKELGAKIYG------------IEPGNEGNQRILDMINNNKFSLK 167
A + + + GA + LD +
Sbjct: 141 APADDRSALVLTEQQAESWGASSVADLAPRCSTLSLHASDDFASDAGALDRLQARYGCTF 200
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
+ S + ++ P + P+ + + L E +V
Sbjct: 201 AEVVPTRSPAGATREL--AVVGASPVRGTT-AADPVIAQDELVVLTDDEGAFT--AQNVI 255
Query: 228 TVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ RS L ++ L ++ S M + + + L H
Sbjct: 256 PLFRSGVLTAD-DVRSLSVVLQLSTDDLTAMAARVRDGEISSADAAGVWLEEH 307
>gi|89095473|ref|ZP_01168382.1| hypothetical ABC transporter, substrate binding protein
[Oceanospirillum sp. MED92]
gi|89080250|gb|EAR59513.1| hypothetical ABC transporter, substrate binding protein
[Oceanospirillum sp. MED92]
Length = 65
Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K + + + F+ S+A AD C V AD W+ + ILE G + +
Sbjct: 1 MKK-MPLAILPLMFASSFAAAADDCGKVSIADMNWSSATLMANVDRFILEHGFGCEAELV 59
Query: 61 LLAVPV 66
Sbjct: 60 PGDTMP 65
>gi|227114853|ref|ZP_03828509.1| putative taurine-binding periplasmic protein [Pectobacterium
carotovorum subsp. brasiliensis PBR1692]
Length = 337
Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 41/280 (14%), Positives = 82/280 (29%), Gaps = 36/280 (12%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M L+ I+ + A P VR A +G + + L++ LG
Sbjct: 1 MKNRLSAVGVSGLLLITTSVLAAEKQPDEVRVAYSGGSQVLVLAKADGS-LQKALGAPVK 59
Query: 59 -IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
++ + + IDI P+ + +++V + A Y +
Sbjct: 60 WVQFASGADALNYFASNAIDIANFGSSPATAGIVRKLP----VEIVGVSGVIATYERLI- 114
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
GI + +DI K P + + I NK LI
Sbjct: 115 ---AKSGIATLKDI-------EGKRVAYPPNSTAQYALEAAIAVNKLDRSKITLIPL--- 161
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY--TVVRSDYL 235
+++ + W P + + + + +Y VVR +
Sbjct: 162 -RPAEMVAAWKRGDIDAGYVWAPFAQELEASAGHAIFATKDLQKDGYLIYNNYVVRKAFA 220
Query: 236 DKCPN-ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGR 274
+ P ++R L+ + + +QD +
Sbjct: 221 QQYPETVARFLRVHQL----------KVDEFRQDPEKAAA 250
>gi|50120463|ref|YP_049630.1| putative taurine-binding periplasmic protein [Pectobacterium
atrosepticum SCRI1043]
gi|49610989|emb|CAG74434.1| putative taurine-binding periplasmic protein [Pectobacterium
atrosepticum SCRI1043]
Length = 337
Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 39/280 (13%), Positives = 83/280 (29%), Gaps = 36/280 (12%)
Query: 1 MYKILAVCLFLTTFSISYARDADSC--TPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M IL+ ++ + A +R A +G + + L++ LG
Sbjct: 1 MKNILSAVGVGGLLLMTTSVLAAEKHPDEIRVAYSGGSQVLVLAKADGS-LQKALGAPVK 59
Query: 59 -IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
++ + + IDI P+ + +++V + A Y +
Sbjct: 60 WVQFASGADALNYFASNAIDIANFGSSPATAGIVRKLP----VEIVGVSGVIATYERLI- 114
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
GI + +DI K P + + I NK LI
Sbjct: 115 ---AKSGITTLKDI-------EGKRVAYPPNSTAQYALEAAIAVNKLDRSKITLIPL--- 161
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY--TVVRSDYL 235
+++ + W P + + + + +Y VVR +
Sbjct: 162 -RPAEMVAAWKRGDIDAGYVWAPFAQELEASAGHAIFATKDLQKDGYLIYNNYVVRKAFA 220
Query: 236 DKCPN-ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGR 274
+ P ++R L+ + + + +QD +
Sbjct: 221 QQYPETVARFLRVHQ----------QKVDEFRQDPEKAAA 250
>gi|87119628|ref|ZP_01075525.1| ABC taurine transporter, periplasmic ligand binding protein
[Marinomonas sp. MED121]
gi|86165104|gb|EAQ66372.1| ABC taurine transporter, periplasmic ligand binding protein
[Marinomonas sp. MED121]
Length = 342
Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 34/271 (12%), Positives = 75/271 (27%), Gaps = 31/271 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFAD----TGWTDIAATTAMTSVILEEILGYK 56
+ K L + + S A+ V W + + E+ G+
Sbjct: 10 IKKTLGLSMLAGGLVASQYASAE---TVTIGYQGMMNPWKSV-----IAEKQFEKATGFA 61
Query: 57 TN-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
+ + ++ + IDI P + + + EN+
Sbjct: 62 VKWRRFDSGAKVITAMASGDIDIATAGSSPIAAAV--NKGLDIELVWILENIND------ 113
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
+ ++L K G+ + + +L + + K +LI
Sbjct: 114 -----AEALVVRNGSGISSPQDLKGKKIGVPFVSTTHFHMLFALEQFGLTDKDVKLINMQ 168
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY-TVVRSDY 234
I W+P + + E+S +G+A+ V+ +
Sbjct: 169 PN----AIAAAWERGDIDAAFIWDPALGRIKQSGQVMISSGELSRWGKATFDGMVINKSF 224
Query: 235 LDKCPNISRLLKNIKFSVALENEMMKLILNN 265
++ P L + E K +L+
Sbjct: 225 GEEQPQAVAQLIKLIADADNEYRQNKAVLSE 255
>gi|154685347|ref|YP_001420508.1| SsuA [Bacillus amyloliquefaciens FZB42]
gi|154351198|gb|ABS73277.1| SsuA [Bacillus amyloliquefaciens FZB42]
Length = 329
Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 39/259 (15%), Positives = 70/259 (27%), Gaps = 28/259 (10%)
Query: 1 MYKILAVCLFLTTFSISYARD--ADSCTP---VRFADTGWTDIAATTAMTSVILEEIL-- 53
M KI+ + S + D S +R EE
Sbjct: 1 MKKIIILLAAAVMMSAGCSADRTGGSGKTVKEIRIGIQQSLSPLLIAK-EKGWFEEAFKK 59
Query: 54 -GYKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAK 111
G K P F L +D P + A + +
Sbjct: 60 DGIKVKWVEFQSGPPQFEGLAADKLDFSQVGNSPVISGQAAGIDFK-------------E 106
Query: 112 YMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
L+ + + + + + KEL K + G+ G + ++ S +
Sbjct: 107 IGLSQDGLKANGILVNKGSGIQSLKELKGKKIAVAKGSSGFDFLYKALDKAGLSADDVTI 166
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVR 231
I+ + N + WEP+ L S + +T+VR
Sbjct: 167 IQLQPD----EAVSAFENKSVDAWSIWEPYLSIETLQHGAEILANGESTDLYSPGFTLVR 222
Query: 232 SDYLDKCP-NISRLLKNIK 249
+ + + P + R LK
Sbjct: 223 TGFSKEHPDEVVRFLKVFN 241
>gi|325676399|ref|ZP_08156077.1| amino acid ABC superfamily ATP binding cassette transporter,
substrate-binding protein [Rhodococcus equi ATCC 33707]
gi|325552577|gb|EGD22261.1| amino acid ABC superfamily ATP binding cassette transporter,
substrate-binding protein [Rhodococcus equi ATCC 33707]
Length = 308
Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/293 (10%), Positives = 73/293 (24%), Gaps = 23/293 (7%)
Query: 4 ILAVCLFLTTFSISYAR--DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
++ + T + + + V + + + L G T + L
Sbjct: 22 VVPAVVIATACGVDTSSRTGGPTAPTVVIGAADTVESELVARLYAGALGAN-GRSTELVL 80
Query: 62 LAVPVT--FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+L + + + L +F + + + L+V++
Sbjct: 81 GLGDQADRLAALDADRVSLVPEHTGRLLHRFDPTADATEAEDVYDALSRSLPQGLSVSEY 140
Query: 120 GFALGIKSYQDIAKYKKELGAKIYG------------IEPGNEGNQRILDMINNNKFSLK 167
A + + + GA + LD +
Sbjct: 141 APADDRSALVLTEQQAESWGASSVADLAPRCSTLSLHASDDFASDAGALDRLQARYGCTF 200
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
+ S + ++ P + P+ + + L E +V
Sbjct: 201 AEVVPTRSPAGATREL--AVVGASPVRGTT-AADPVIAQDELVVLTDDEGAFT--AQNVI 255
Query: 228 TVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ RS L +I L ++ S M + + + L H
Sbjct: 256 PLFRSGVLTAD-DIRSLSVVLQLSTDDLTAMAARVRDGEISSADAAGVWLEEH 307
>gi|320164404|gb|EFW41303.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 692
Score = 56.4 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 14/123 (11%), Positives = 36/123 (29%), Gaps = 14/123 (11%)
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLP--------------GGEE 217
+ + A I P + + +PH + +D +
Sbjct: 209 VSQTMDAMVGVIGPAYFLRQPFITYAAKPHYVFADNSPARFHRMQLPEYDSTCNISSSAN 268
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTML 277
G+ + SV ++ S K P + +S ++ ++ + Q + +
Sbjct: 269 RCGYPDQSVIKLISSGLAGKNPVVYDFAAQFSYSGNDQSNILGQVYFGGQSLEEATCEWV 328
Query: 278 RTH 280
+
Sbjct: 329 LAN 331
>gi|42781874|ref|NP_979121.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein, putative [Bacillus
cereus ATCC 10987]
gi|42737798|gb|AAS41729.1| glycine betaine/L-proline ABC transporter, glycine
betaine/L-proline-binding protein, putative [Bacillus
cereus ATCC 10987]
Length = 64
Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 2 YKILAVCLFL---TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
KI +CL L FS A +A+S ++ T W + AT M V+LE+ GYK
Sbjct: 3 KKIWLICLALFITMIFSSCNATNANSKGKIKLGVTSWKENIATANMWKVLLEQK-GYKVE 61
Query: 59 IKL 61
+
Sbjct: 62 LMY 64
>gi|226327018|ref|ZP_03802536.1| hypothetical protein PROPEN_00879 [Proteus penneri ATCC 35198]
gi|225204236|gb|EEG86590.1| hypothetical protein PROPEN_00879 [Proteus penneri ATCC 35198]
Length = 271
Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 32/283 (11%), Positives = 74/283 (26%), Gaps = 24/283 (8%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K LAV L P +R ++ + + ++ G +
Sbjct: 5 FKSLAVVSALIGALALAGCGEKEKDPNHIRVGVISGSEQQV-AEVAKQVAKDKYGLDVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V SL IDI P L++ I + + A Y + D
Sbjct: 64 VTFNDFVMPNESLSRGDIDINAFQHKPYLDQQIKDRNYKITAVGNTFIYPIAGYSKKITD 123
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ + + + G ++ + + +IE +
Sbjct: 124 LADLPDEAQVAIPNDPTNLGRSLLLLEKVG------LIKLKDGVGLLPTKLDIIENPKKL 177
Query: 179 SFSQIR-----RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
++ R + + + + S +N+ G + V +V +
Sbjct: 178 QLVELEAPQLPRSLDDQKIYLAVINTTYA--SQVNLTPAKDGIFVEDKDSPYVNIIVARE 235
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
N+ + ++ + + I N +
Sbjct: 236 DNKDSENVKKFIQAYQ--TDEVDSAANKIFNGG-----AVKGW 271
>gi|238005556|tpg|DAA06501.1| TPA_inf: venus kinase receptor [Pediculus humanus corporis]
Length = 1154
Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 32/273 (11%), Positives = 75/273 (27%), Gaps = 25/273 (9%)
Query: 40 ATTAMTSVILEEILGYK-TNIKLLA--VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE 96
T+ + + L+E++GY I T + + + S I +
Sbjct: 34 ITSNIFKIFLDEVIGYDSVEIVQRKDYFNSTLALSRLQDGWFIPKKFSNSALDSIHWKVF 93
Query: 97 EGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEP--------- 147
+ + + + K+Y + ++ + +
Sbjct: 94 QNKELAQKYGVDETILETEIREFAIDPETKNYFCPSPICEDGVFVMEKCQSRKGRSPCAM 153
Query: 148 ---GNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPIN 204
G+ + + + L + L + + + R + P V LSW P I
Sbjct: 154 LFAGHFSDVTKFVIEDIKSLDLFVSVIWLGPNLKNVTSRLIENRKDQPVVILSWTPSIIT 213
Query: 205 SDLNIHYLPGGEEI--------SGFGEASVYTVVRSDYLDKCPNISR-LLKNIKFSVALE 255
+ + + + + ++ FS +
Sbjct: 214 ASGEFVSVVFPPCQNEKPLTPGCNYELQRLVKSTSRTLAQGARQAWEQAVNDMYFSDSQY 273
Query: 256 NEMMKLILNN-KQDRQFVGRTMLRTHPDLLKNW 287
++K L N Q + ++TH K+W
Sbjct: 274 RGLLKDYLANLSLSHQDIACNWMKTHQSTWKHW 306
>gi|253687793|ref|YP_003016983.1| Substrate-binding region of ABC-type glycine betaine transport
system [Pectobacterium carotovorum subsp. carotovorum
PC1]
gi|251754371|gb|ACT12447.1| Substrate-binding region of ABC-type glycine betaine transport
system [Pectobacterium carotovorum subsp. carotovorum
PC1]
Length = 337
Score = 56.0 bits (133), Expect = 7e-06, Method: Composition-based stats.
Identities = 41/280 (14%), Positives = 82/280 (29%), Gaps = 36/280 (12%)
Query: 1 MYKILAVCLFLTTFSISYARDADSC--TPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M L+V I+ + A VR A +G + + L++ LG
Sbjct: 1 MKNRLSVVGVSGLLLITTSVLAAEKHPDEVRVAYSGGSQVLVLAKADGS-LQKALGAPVK 59
Query: 59 -IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
++ + + IDI P+ + +++V + A Y +
Sbjct: 60 WVQFASGADALNYFASNAIDIANFGSSPATAGIVRKLP----VEIVGVSGVIATYERLI- 114
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
GI + +DI K P + + I NK LI
Sbjct: 115 ---AKSGIATLKDI-------EGKRVAYPPNSTAQYALEAAIAVNKLDRSKITLIPL--- 161
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY--TVVRSDYL 235
+++ + W P + + + + +Y VVR +
Sbjct: 162 -RPAEMVAAWKRGDIDAGYVWAPFAQELEASAGHAIFATKDLQKDGYLIYNNYVVRKAFA 220
Query: 236 DKCPN-ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGR 274
+ P ++R L+ + + +QD +
Sbjct: 221 QQYPETVARFLRVHQL----------KVDEFRQDPEKAAA 250
>gi|86138049|ref|ZP_01056624.1| hypothetical protein MED193_00940 [Roseobacter sp. MED193]
gi|85825076|gb|EAQ45276.1| hypothetical protein MED193_00940 [Roseobacter sp. MED193]
Length = 47
Score = 56.0 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 244 LLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIG 290
+LKN++F+ N + + NK+D Q V + + +++ +W+ G
Sbjct: 1 MLKNVQFTGDEINGWIVEMFENKRDPQEVAEEWIEDNAEIVSSWING 47
>gi|145596797|ref|YP_001161094.1| substrate-binding region of ABC-type glycine betaine transport
system [Salinispora tropica CNB-440]
gi|145306134|gb|ABP56716.1| Substrate-binding region of ABC-type glycine betaine transport
system [Salinispora tropica CNB-440]
Length = 377
Score = 55.6 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 23/215 (10%), Positives = 61/215 (28%), Gaps = 30/215 (13%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFR-SLKNK 74
++ + +++ + ++L GY+ ++ + + +L+
Sbjct: 166 LTAGLAKGPGGTITVGAANFSESETLAELYKIVLVAA-GYEVEVQQIGSRELYEPALEKG 224
Query: 75 GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML-------------------- 114
I +F Y E EG+ + + +L L
Sbjct: 225 EIHVFPEYAATLAEFLNTKANGEGAEPVSSPDLDETVAALKVLGAEANLALGAPAAAQNQ 284
Query: 115 ----AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
G+++ ++A+ + G + + ++ F F
Sbjct: 285 NAFAVTRAFADKHGVQTLTELAEKCSGQETVLAGPPECPQRPKCQAGLVEVYDFRAGSF- 343
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINS 205
+S A Q + R + +V L + +
Sbjct: 344 ---SSLDAGGPQTKNALRTGVASVGLVFSSDGALT 375
>gi|197286107|ref|YP_002151979.1| DL-methionine transporter substrate-binding subunit [Proteus
mirabilis HI4320]
gi|194683594|emb|CAR44477.1| D-methionine ABC transporter, substrate-binding lipoprotein
[Proteus mirabilis HI4320]
Length = 271
Score = 55.6 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 32/283 (11%), Positives = 74/283 (26%), Gaps = 24/283 (8%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K LAV L P +R ++ + + ++ G +
Sbjct: 5 FKSLAVVSALVGALALAGCGEKEKDPNHIRVGVISGSEQQV-AEVAKQVAKDKYGLNVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V SL IDI P L++ I + + A Y + D
Sbjct: 64 VTFNDFVMPNESLSRGDIDINAFQHKPYLDQQIKDRNYKITAVGNTFIYPIAGYSKKITD 123
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ + + + G ++ + +IE +
Sbjct: 124 LADLPDGAQVAIPNDPTNLGRSLLLLEKVG------LVKLKEGVGLLPTKLDIIENPKNI 177
Query: 179 SFSQIR-----RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
++ R + + + + S +N+ G + V +V +
Sbjct: 178 QLVELEAPQLPRSLDDQKIYLAVINTTYA--SQVNLTPAKDGIFVEDKDSPYVNIIVARE 235
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
N+ + +++ + + I N +
Sbjct: 236 DNKDDENVKKFIQSYQ--TDEVDSAANKIFNGG-----AVKGW 271
>gi|308172871|ref|YP_003919576.1| aliphatic sulfonate ABC transporter binding lipoprotein [Bacillus
amyloliquefaciens DSM 7]
gi|307605735|emb|CBI42106.1| aliphatic sulfonate ABC transporter (binding lipoprotein) [Bacillus
amyloliquefaciens DSM 7]
Length = 329
Score = 55.6 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 34/259 (13%), Positives = 67/259 (25%), Gaps = 28/259 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSC-----TPVRFADTGWTDIAATTAMTSVILEEIL-- 53
M K + + + +R EE
Sbjct: 1 MKKTIILLAAAVMMLTGCSAHGAGGSGKTVKEIRIGIQQSLSPLLIAK-EKGWFEEAFKK 59
Query: 54 -GYKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAK 111
G K P F L +D P + A + +
Sbjct: 60 DGIKVKWVEFQSGPPQFEGLAADKLDFSQVGNSPVISGQAAGIDFK-------------E 106
Query: 112 YMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
L+ + + + + + +EL K + G+ G + ++ S +
Sbjct: 107 IGLSQDGLKANGILVNKDSGIQSLQELKGKKIAVAKGSSGFDFLYKALDKAGLSADDVTI 166
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVR 231
I+ + N + WEP+ L S + +T+VR
Sbjct: 167 IQLQPD----EAVSAFENKSVDAWSIWEPYLSIETLQHGAEMLANGESTDLYSPGFTLVR 222
Query: 232 SDYLDKCPN-ISRLLKNIK 249
+ + + P+ + R LK
Sbjct: 223 TGFSKEHPDGVVRFLKVFN 241
>gi|328552510|gb|AEB23002.1| aliphatic sulfonate ABC transporter (binding lipoprotein) [Bacillus
amyloliquefaciens TA208]
gi|328910909|gb|AEB62505.1| aliphatic sulfonate ABC transporter (binding lipoprotein) [Bacillus
amyloliquefaciens LL3]
Length = 329
Score = 55.6 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 34/259 (13%), Positives = 67/259 (25%), Gaps = 28/259 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSC-----TPVRFADTGWTDIAATTAMTSVILEEIL-- 53
M K + + + +R EE
Sbjct: 1 MKKTIILLAAAVMMLTGCSAHGAGGSGKTVKEIRIGIQQSLSPLLIAK-EKGWFEEAFKK 59
Query: 54 -GYKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAK 111
G K P F L +D P + A + +
Sbjct: 60 DGIKVKWVEFQSGPPQFEGLAADKLDFSQVGNSPVISGQAAGIDFK-------------E 106
Query: 112 YMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
L+ + + + + + +EL K + G+ G + ++ S +
Sbjct: 107 IGLSQDGLKANGILVNKDSGIQSLQELKGKKIAVAKGSSGFDFLYKALDKAGLSADDVTI 166
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVR 231
I+ + N + WEP+ L S + +T+VR
Sbjct: 167 IQLQPD----EAVSAFENKSVDAWSIWEPYLSIETLQHGAEMLANGESTDLYSPGFTLVR 222
Query: 232 SDYLDKCPN-ISRLLKNIK 249
+ + + P+ + R LK
Sbjct: 223 TGFSKEHPDGVVRFLKVFN 241
>gi|227357226|ref|ZP_03841583.1| D-methionine ABC superfamily ATP binding cassette transporter,
substrate-binding lipoprotein [Proteus mirabilis ATCC
29906]
gi|227162489|gb|EEI47478.1| D-methionine ABC superfamily ATP binding cassette transporter,
substrate-binding lipoprotein [Proteus mirabilis ATCC
29906]
Length = 271
Score = 55.6 bits (132), Expect = 9e-06, Method: Composition-based stats.
Identities = 32/283 (11%), Positives = 74/283 (26%), Gaps = 24/283 (8%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K LAV L P +R ++ + + ++ G +
Sbjct: 5 FKSLAVVSTLVGALALAGCGEKEKDPNHIRVGVISGSEQQV-AEVAKQVAKDKYGLNVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V SL IDI P L++ I + + A Y + D
Sbjct: 64 VTFNDFVMPNESLSRGDIDINAFQHKPYLDQQIKDRNYKITAVGNTFIYPIAGYSKKITD 123
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ + + + G ++ + +IE +
Sbjct: 124 LADLPDGAQVAIPNDPTNLGRSLLLLEKVG------LVKLKEGVGLLPTKLDIIENPKNI 177
Query: 179 SFSQIR-----RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
++ R + + + + S +N+ G + V +V +
Sbjct: 178 QLVELEAPQLPRSLDDQKIYLAVINTTYA--SQVNLTPAKDGIFVEDKDSPYVNIIVARE 235
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
N+ + +++ + + I N +
Sbjct: 236 DNKDDENVKKFIQSYQ--TDEVDSAANKIFNGG-----AVKGW 271
>gi|307305452|ref|ZP_07585200.1| Substrate-binding region of ABC-type glycine betaine transport
system [Shewanella baltica BA175]
gi|306911755|gb|EFN42180.1| Substrate-binding region of ABC-type glycine betaine transport
system [Shewanella baltica BA175]
Length = 157
Score = 55.6 bits (132), Expect = 9e-06, Method: Composition-based stats.
Identities = 24/153 (15%), Positives = 45/153 (29%), Gaps = 7/153 (4%)
Query: 1 MYKILAVCLFLTTFSISYARDAD-----SCTPVRFADTGWTDIAATTAMTSVILEEILGY 55
+ ++ A AD V+ A W A+ LE LGY
Sbjct: 3 LKNVILGAALAAMTVTGSAALADTLKPGEGITVKPARATWDTGFFQEALVRRGLET-LGY 61
Query: 56 KTN-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
K L P+ ++++ ID + W+P + +E + K+ G
Sbjct: 62 DVEKPKTLVNPIFYKTVTLGDIDYWANGWFPMHNDQLPSNFDEKAEKIGYVIKAGGLGGY 121
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEP 147
++ + K + A +
Sbjct: 122 LISKKEADKYKITSLADFKRPEVKQAFDTNGDG 154
>gi|297517415|ref|ZP_06935801.1| glycine betaine transporter periplasmic subunit [Escherichia coli
OP50]
Length = 127
Score = 55.2 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 34/123 (27%), Gaps = 3/123 (2%)
Query: 4 ILAVCLFLTTFSISYARD-ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKL 61
+ A + ++A D V + T+ T + S LE LGY
Sbjct: 6 LFATAFATLISTQTFAADLPGKGITVNPVQSTITEETFQTLLVSRALE-KLGYTVNKPSE 64
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ V + SL + W P + + + GA ++
Sbjct: 65 VDYNVGYTSLASGDATFTAVNWTPLHDNMYEAAGGDKKFYREGVFVNGAAQGYLIDKKTA 124
Query: 122 ALG 124
Sbjct: 125 DQY 127
>gi|218673238|ref|ZP_03522907.1| proline/glycine betaine ABC transporter, substrate-binding
protein [Rhizobium etli GR56]
Length = 94
Score = 55.2 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/89 (47%), Positives = 64/89 (71%), Gaps = 3/89 (3%)
Query: 2 YKILAVCLF--LTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K++ L+ + ++A D +SC+ VRF+D GWTDI ATTA SV+L+ +GY+T++
Sbjct: 7 FKLVTATAVAALSVATAAFAADPESCSTVRFSDVGWTDITATTATASVVLKS-IGYQTDV 65
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLE 88
K+L+VPVT+ SLKNK ID+F+G W + E
Sbjct: 66 KVLSVPVTYTSLKNKDIDVFLGNWMETQE 94
>gi|311067367|ref|YP_003972290.1| aliphatic sulfonate ABC transporter binding lipoprotein [Bacillus
atrophaeus 1942]
gi|310867884|gb|ADP31359.1| aliphatic sulfonate ABC transporter binding lipoprotein [Bacillus
atrophaeus 1942]
Length = 327
Score = 55.2 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 40/318 (12%), Positives = 76/318 (23%), Gaps = 53/318 (16%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTP----VRFADTGWTDIAATTAMTSVILEEIL--- 53
M K + + D S + EE
Sbjct: 1 MKKAFILLSAVIFLLAGCGSDGASGKKELKEINIGIQQSLSPLLIAK-EKGWFEEAFEKE 59
Query: 54 GYKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKY 112
G K P F L +D P + A + +
Sbjct: 60 GIKVKWTEFQSGPPQFEGLAADKLDFSQVGNSPVISGQAAGISFK-------------EI 106
Query: 113 MLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
L+ + + + K+L K + G+ G + ++ S +I
Sbjct: 107 GLSQDGLKANGILVKKDSGIHNLKDLKGKKIAVAKGSSGFDFLYKALDQEGLSAGDVNII 166
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRS 232
+ + N + WEP+ L S + +T+VR+
Sbjct: 167 QLQPD----EATSAFENGAVDAWSIWEPYLSIETLKHEAKIIANGESTDLYSPGFTLVRT 222
Query: 233 DYLDKCP-NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGV 291
+ D+ P + R LK + H + + +
Sbjct: 223 KFADEYPDEVVRFLK----------------------VYDKAVAWQKKHREEAADLYADI 260
Query: 292 TTFDGQDPSRQLERFMNN 309
D ++ +NN
Sbjct: 261 KNLD----KEVVKNVLNN 274
>gi|303328241|ref|ZP_07358679.1| taurine ABC transporter, periplasmic taurine-binding protein
[Desulfovibrio sp. 3_1_syn3]
gi|302861571|gb|EFL84507.1| taurine ABC transporter, periplasmic taurine-binding protein
[Desulfovibrio sp. 3_1_syn3]
Length = 339
Score = 55.2 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/279 (11%), Positives = 77/279 (27%), Gaps = 34/279 (12%)
Query: 1 MYKILAVCLFLTTFSISY--ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M K + + + + AD VR + + + E+ +G
Sbjct: 1 MKKFICLAFLALFVVSAAQPLQAADKPEKVRIGYLSLVNGQLLSK-YLQLHEKEMGVPVE 59
Query: 59 I-KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+ + ++ +K ID P+ +A + I + N+ GA L V
Sbjct: 60 WFRFNSGRDVNTAMASKSIDFGNVGLPPATIG-LAGGMNYWGI--MNANVLGAVESLVVR 116
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
K+L K G+ + ++ + + ++++ +
Sbjct: 117 KDI------------NSLKDLEGKTVVAPFGSTTHYLLIKALREAGVDMGKVKIMDMAPG 164
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE--ASVYTVVRSDYL 235
+ + R WEP N + E V+ ++
Sbjct: 165 EALAPFIR----GDIDAAYIWEPGLGLVVQNGGKILLTSEQMAEKGHLTWDVISVQPEFA 220
Query: 236 DKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGR 274
K P + + + M ++ + +
Sbjct: 221 RKYPELVTMFIK-----SELAAMEYW----REHPEEAAK 250
>gi|126432708|ref|YP_001068399.1| substrate-binding region of ABC-type glycine betaine transport
system [Mycobacterium sp. JLS]
gi|126232508|gb|ABN95908.1| Substrate-binding region of ABC-type glycine betaine transport
system [Mycobacterium sp. JLS]
Length = 341
Score = 55.2 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/287 (12%), Positives = 76/287 (26%), Gaps = 41/287 (14%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDI--AATTAMTSVILEEIL-GYKTN-I 59
+ L + S+ + +R A + LE+ L Y
Sbjct: 9 VAVTMLAVAGCSVDTSGQDAGKQTIRIAYQSFPSGDLIVKNNRW---LEDALPDYNIKWT 65
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
K + + K +D P AP + V +
Sbjct: 66 KFDSGADVNTAFIAKEVDFGALGSSPVARGLSAPLNIPYKVAFVLDVAGDN--------- 116
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+ +L K G + + +L ++ N S +L++ A
Sbjct: 117 --EALVARNGSGVNTIADLRGKRVGTPFASTAHYSLLAALDQNGLSPNDVQLVDLQPQAI 174
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY-TVVRSDYLDKC 238
+ SW P N L +++ G+ ++ VV ++ +
Sbjct: 175 LA----AFDRGDIDAGYSWLPTLDQLRRNGKDLITSRQLARDGKPTLDLAVVADEFAEAH 230
Query: 239 PNISRLLKNIKFSVALENEMMKLILNN------------KQDRQFVG 273
P++ + + E + +I ++ + V
Sbjct: 231 PDVVDIWRQ------QEARALTVIKDDPDAAAKAIAAEIGLTPEEVA 271
>gi|108806905|ref|YP_650821.1| ABC type periplasmic choline/glycine/betaine binding protein
[Yersinia pestis Antiqua]
gi|108812940|ref|YP_648707.1| ABC type periplasmic choline/glycine/betaine binding protein
[Yersinia pestis Nepal516]
gi|167466727|ref|ZP_02331431.1| quaternary amine uptake ABC transporter (QAT) family,
substrate-binding protein [Yersinia pestis FV-1]
gi|229841140|ref|ZP_04461299.1| Glycine betaine-binding protein [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229843244|ref|ZP_04463390.1| Glycine betaine-binding protein [Yersinia pestis biovar Orientalis
str. India 195]
gi|229894138|ref|ZP_04509324.1| Glycine betaine-binding protein [Yersinia pestis Pestoides A]
gi|229903372|ref|ZP_04518485.1| Glycine betaine-binding protein [Yersinia pestis Nepal516]
gi|270487181|ref|ZP_06204255.1| conserved hypothetical protein [Yersinia pestis KIM D27]
gi|294503213|ref|YP_003567275.1| ABC type periplasmic choline/glycine/betaine binding protein
[Yersinia pestis Z176003]
gi|108776588|gb|ABG19107.1| ABC type periplasmic choline/glycine/betaine binding protein
[Yersinia pestis Nepal516]
gi|108778818|gb|ABG12876.1| ABC type periplasmic choline/glycine/betaine binding protein
[Yersinia pestis Antiqua]
gi|229679142|gb|EEO75245.1| Glycine betaine-binding protein [Yersinia pestis Nepal516]
gi|229689591|gb|EEO81652.1| Glycine betaine-binding protein [Yersinia pestis biovar Orientalis
str. India 195]
gi|229697506|gb|EEO87553.1| Glycine betaine-binding protein [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229704023|gb|EEO91036.1| Glycine betaine-binding protein [Yersinia pestis Pestoides A]
gi|262361252|gb|ACY57973.1| ABC type periplasmic choline/glycine/betaine binding protein
[Yersinia pestis D106004]
gi|262365211|gb|ACY61768.1| ABC type periplasmic choline/glycine/betaine binding protein
[Yersinia pestis D182038]
gi|270335685|gb|EFA46462.1| conserved hypothetical protein [Yersinia pestis KIM D27]
gi|294353672|gb|ADE64013.1| ABC type periplasmic choline/glycine/betaine binding protein
[Yersinia pestis Z176003]
gi|320015964|gb|ADV99535.1| Glycine betaine-binding protein [Yersinia pestis biovar Medievalis
str. Harbin 35]
Length = 106
Score = 54.8 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 14/99 (14%), Positives = 33/99 (33%), Gaps = 4/99 (4%)
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
++ + +++ + L + L + + + ++R L PNI
Sbjct: 5 AAAEQISGVNAAMAYGTDGPVAALGLQTLEDTKGV--QPIYAPAPIIREVTLKAHPNIPA 62
Query: 244 LLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
LL + ++ I QD + V L+ +
Sbjct: 63 LLNPVFATLDGPTLQKLNARIAVEGQDAKKVAANYLKDN 101
>gi|182434304|ref|YP_001822023.1| putative ABC transporter substrate-binding protein [Streptomyces
griseus subsp. griseus NBRC 13350]
gi|178462820|dbj|BAG17340.1| putative ABC transporter substrate-binding protein [Streptomyces
griseus subsp. griseus NBRC 13350]
Length = 316
Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/285 (9%), Positives = 71/285 (24%), Gaps = 35/285 (12%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFR-SLKNKGIDI 78
+ G+T+ + +++LE GY +I + + +L+N ID+
Sbjct: 33 APPGDSKHLTVGSAGFTESDLLAQLYALLLEHA-GYSADIISVTNREIYEPALENGQIDV 91
Query: 79 FMGYWYP-----------------------SLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
Y + K + + ++ + A
Sbjct: 92 VAEYAATFADWLNAKANGADAPPVGSPDLATTMKELRSLAAPRGLTVLDPGRAVDQNAFA 151
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
V + ++ + +
Sbjct: 152 V--TAAYAKEHRLKTLSDVGAAKLPVRLAAGDECVQRPYCAPGLRGTYGID---VVAVDP 206
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYL 235
+ +Q ++ ++ + L+ + L + + V VV
Sbjct: 207 KGVGTTQAKQAVQSGQDQMVLTTTTDATLDRFGLVLLED--DKNLQNADYVVPVVNRARA 264
Query: 236 DKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLR 278
+ L + + A M + + + ++ + V R L
Sbjct: 265 GSAG-VRDALGRLNTVLTTADLASMNEQVDSWRRLPEDVARAYLE 308
>gi|222055626|ref|YP_002537988.1| NMT1/THI5 like domain protein [Geobacter sp. FRC-32]
gi|221564915|gb|ACM20887.1| NMT1/THI5 like domain protein [Geobacter sp. FRC-32]
Length = 346
Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 33/293 (11%), Positives = 81/293 (27%), Gaps = 26/293 (8%)
Query: 1 MYKILAVCLFLTTF-SISYARDADSCTPVRFADTGWTDIAATTAMTS-VILEEILGYKTN 58
+ K+ L LT +++ A + ++ + T + L E G +
Sbjct: 4 LKKLAQAALALTFAVTLASPATAANRPTLKVGYAPG-GGSVLTFIAKDQKLFEKEGIEVE 62
Query: 59 IK-LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+ + +L + +D+ + + + + ++ +L G +LA+
Sbjct: 63 LVQFASSADGLNALNSGKVDVGISF---GTAGPLTFISKGSDFTIIGGHLSGGHPVLALP 119
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
G K K +IY + G + L + ++ EL
Sbjct: 120 ---AKAGQFKSIRDFKGKTVATPRIYTADIVWRGAL--------KRAGLDPNKDVKIIEL 168
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDK 237
+ S + + + + + + + G V + + +
Sbjct: 169 KNPSAVLEAVKAGKVDAGIGASSVLVKARESGVAIVGWSNDYFPNHPCCRIVAKGKAVKE 228
Query: 238 CPNISRLLKNIKFSVALENEMM--KLILNN----KQDRQFVGRTM-LRTHPDL 283
P R + N D + + + L H +
Sbjct: 229 NPEAYRAFLRAVLQAEKLKAANPRLAVEENKKFLGMD-ESMAKEFTLEPHQHV 280
>gi|321477579|gb|EFX88537.1| hypothetical protein DAPPUDRAFT_310745 [Daphnia pulex]
Length = 424
Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 14/112 (12%), Positives = 34/112 (30%), Gaps = 13/112 (11%)
Query: 189 NNIPAVFLSWEPHPI----------NSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+ +F +W P I P + + V +
Sbjct: 202 SGRSIMFFAWRPSTITESAEFLSVSFPQCETLSTPDSDMRCAYEFQRFEKVAWTYLKKGA 261
Query: 239 PNISRLLKNIKFSVALENEMMKLILNN-KQDR--QFVGRTMLRTHPDLLKNW 287
+ L+ + F+ N M+ L +++ + + ++ +PD+ W
Sbjct: 262 KLVFEALQRVFFTQEEYNAMLHLYNERPEKEPLVEEIACDWMKRNPDVWSQW 313
>gi|149011275|ref|ZP_01832522.1| choline transporter [Streptococcus pneumoniae SP19-BS75]
gi|147764265|gb|EDK71196.1| choline transporter [Streptococcus pneumoniae SP19-BS75]
Length = 307
Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 15/101 (14%), Positives = 30/101 (29%), Gaps = 7/101 (6%)
Query: 3 KILAVCLFLTTFSISYARDAD-----SCTPVRFADTGWTDIAATTAMTSVILEEI--LGY 55
+ + L T + + V A + M +++EE L
Sbjct: 207 RTIFSGFALVTVLLGLSYSPALLVQKEKENVIIAGKIGPEPEILANMYKLLIEENTSLTA 266
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE 96
+ +LK+ IDI+ + E + P +
Sbjct: 267 TVKPNFGKTTFLYEALKSGDIDIYPEFTGTVTESLLQPSPK 307
>gi|124007468|ref|ZP_01692174.1| substrate-binding region of ABC-type glycine betaine transport
system [Microscilla marina ATCC 23134]
gi|123987124|gb|EAY26873.1| substrate-binding region of ABC-type glycine betaine transport
system [Microscilla marina ATCC 23134]
Length = 95
Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 226 VYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLR 278
+ +VR + L K P + ++ + + K S A M L+ KQ+ + V + ++
Sbjct: 1 MAPLVRQNTLSKHPELMQVFEQLTGKISEAEMIRMNYLVDGKKQNPRKVAQDFMK 55
>gi|241121588|ref|XP_002403263.1| hypothetical protein IscW_ISCW017106 [Ixodes scapularis]
gi|215493394|gb|EEC03035.1| hypothetical protein IscW_ISCW017106 [Ixodes scapularis]
Length = 251
Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/121 (17%), Positives = 40/121 (33%), Gaps = 14/121 (11%)
Query: 183 IRRDQRNNIPAVFLSWEP----------HPINSDLNIHYLPGGEEISGFGEASVYTVVRS 232
+ N +F +W+P H L ++ + + VV S
Sbjct: 103 VTSALARNESIIFHNWKPNTLTTLSNVVHIAFPQCEDRALQDFQDNPENAKCE-FEVVWS 161
Query: 233 DYLDKCPNISRLLKNIKFSVALENEMMKLILNN---KQDRQFVGRTMLRTHPDLLKNWLI 289
D P++ + + I F +M+ L +D + T L + LL ++
Sbjct: 162 KLKDSVPDVYDIAQKISFKQEQYEQMLDLYKRESTRDRDYSDIACTFLTQNEHLLHEFVT 221
Query: 290 G 290
G
Sbjct: 222 G 222
>gi|332093255|gb|EGI98315.1| substrate binding domain of ABC-type glycine betaine transport
system family protein [Shigella boydii 5216-82]
Length = 218
Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/181 (12%), Positives = 43/181 (23%), Gaps = 28/181 (15%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
K+ L L A PV+ T+ A + +LE G T ++
Sbjct: 5 KVWVGSLVLLAAVSLPLHAAS---PVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQ 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEG------------------SIKL 102
L PV ++ + +DI+ Y F +
Sbjct: 61 LGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDAAWKNAGQGYEKVKKLDAEQNKLIW 120
Query: 103 VAENLQGAKYMLAVNDVGFALG----IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ + +AV + K + G +
Sbjct: 121 LTPAPANNTWTIAVRQDVAEKNKLTSLADLSRYLKEGGTFKLAASAVVSGWPRRWHCWPV 180
Query: 159 I 159
+
Sbjct: 181 V 181
>gi|323171782|gb|EFZ57426.1| ABC type periplasmic choline/glycine/betaine binding protein
[Escherichia coli LT-68]
Length = 115
Score = 54.1 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 13/98 (13%), Positives = 33/98 (33%), Gaps = 4/98 (4%)
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
Q+ + +++ + L + L + + + VVR L + P +++
Sbjct: 15 AAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPQGV--QPIYAPAPVVRESVLKEYPQMAQ 72
Query: 244 LLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
L+ + ++ I D + V L+
Sbjct: 73 WLQPVFASLDAKTLQQLNASIAVEGLDAKKVAADYLKQ 110
>gi|326774817|ref|ZP_08234082.1| ABC-type glycine betaine transport, periplasmic subunit
[Streptomyces cf. griseus XylebKG-1]
gi|326655150|gb|EGE39996.1| ABC-type glycine betaine transport, periplasmic subunit
[Streptomyces cf. griseus XylebKG-1]
Length = 316
Score = 54.1 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/286 (10%), Positives = 80/286 (27%), Gaps = 37/286 (12%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFR-SLKNKGIDI 78
+ G+T+ + +++LE GY +I + + +L+N ID+
Sbjct: 33 APPGDSKHLTVGSAGFTESDLLAQLYALLLEHA-GYSADIISVTNREIYEPALENGQIDV 91
Query: 79 FMGYWYP-----------------------SLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
Y + K + + ++ + A
Sbjct: 92 VAEYAATFADWLNAKANGADAPPVGSPDLATTMKELRSLAAPRGLTVLDPGRAVDQNAFA 151
Query: 116 VN-DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
V +K+ D+ +L ++ + + + +
Sbjct: 152 VTAAYAKEHRLKTLSDVGA--AKLPVRLAAGDECVQRPYCAPGLRRTYGID----VVAVD 205
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDY 234
+ +Q ++ ++ + L+ + L + + V VV
Sbjct: 206 PKGVGTTQAKQAVQSGQDQMVLTTTTDATLDQFGLVLLED--DKNLQNADYVVPVVNRAR 263
Query: 235 LDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLR 278
+ L + + A M + + + ++ + V RT L
Sbjct: 264 AGSAG-VRDALGRLNTVLTTADLASMNEQVDSWRRLPEDVARTYLE 308
>gi|284989222|ref|YP_003407776.1| Substrate-binding region of ABC-type glycine betaine transport
system [Geodermatophilus obscurus DSM 43160]
gi|284062467|gb|ADB73405.1| Substrate-binding region of ABC-type glycine betaine transport
system [Geodermatophilus obscurus DSM 43160]
Length = 337
Score = 54.1 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 8/78 (10%), Positives = 22/78 (28%), Gaps = 2/78 (2%)
Query: 208 NIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNN 265
+ + ++ +V V P + L + + E+ +
Sbjct: 49 DDQLVVLEDDKQLQNADNVVPAVNMATAMANPALLPALDAVSAAMTTEELIELNAAVDLE 108
Query: 266 KQDRQFVGRTMLRTHPDL 283
+Q + V + + D
Sbjct: 109 RQSAEDVAAGWVEENVDT 126
Score = 46.8 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 18/216 (8%), Positives = 57/216 (26%), Gaps = 31/216 (14%)
Query: 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTF--RSLKNKGI 76
A P+ +T+ + + +L +G+ +++ + + + I
Sbjct: 127 AALEQGSGPIVVGGANFTESTILANVYADVL-GAVGFDASVREVGNRELYLPALISGSEI 185
Query: 77 DIFMGYWYPSLEKF-----------------------IAPYLEEGSIKLVAENLQGAKYM 113
+F Y ++ + P E+ + + +
Sbjct: 186 QVFPEYLATVTDELNELANGPTEDGPATGDVQETLTALQPIAEQAGLVFGEPSEAADQNA 245
Query: 114 LAVNDVGFAL-GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
AV G+ + ++A + + G + + + L+
Sbjct: 246 FAVTQAFADDLGVATLSELADACGDGS-LVLGGPTECPERPQCQPGLEE-AYGLQFDGFR 303
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLN 208
E + + + ++ L + +
Sbjct: 304 ELDAGGPLT--KAALQQGEISIGLVFSSDGALAQQG 337
>gi|320166559|gb|EFW43458.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
Length = 751
Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/128 (15%), Positives = 45/128 (35%), Gaps = 5/128 (3%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEILGYKTNI--KLLAVPVTFRSLKNKGIDIFMGYWY 84
P+R W + + +ILEE LG + +F +L + D M +
Sbjct: 38 PLRIVSNAWNSSMISATIARIILEEKLGLPAQLYGMYGTYDESFAALSSGAGDFLMEAYP 97
Query: 85 PSLEKFIAPYLEEGS-IKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKK--ELGAK 141
+ I ++ + + V + + + + + + + IA Y + + +
Sbjct: 98 KYTQYLIDEFVTDRRTVVYVGPSGIIGETGWYIPEYVWEVSTITDSYIAYYDERIQAMFR 157
Query: 142 IYGIEPGN 149
+ I G
Sbjct: 158 LNTIPVGF 165
Score = 50.2 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 12/123 (9%), Positives = 40/123 (32%), Gaps = 14/123 (11%)
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLP--------------GGEE 217
++ + A + R P + +PH + +D + L
Sbjct: 261 VDETMDAMVAVTRVAYIARKPFIQYWTKPHYVFADSSPARLHRVQLPEFDLSCNVSSSAY 320
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTML 277
G+ V ++ S + K + + + ++ ++ ++ ++ N + + +
Sbjct: 321 RCGYENERVLKLMSSKLVAKNSVAASFVDHFTYTSQDQSNILGQMVFNGKSLEEATCEWV 380
Query: 278 RTH 280
+
Sbjct: 381 IAN 383
>gi|323452015|gb|EGB07890.1| hypothetical protein AURANDRAFT_71709 [Aureococcus anophagefferens]
Length = 2046
Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 41/359 (11%), Positives = 77/359 (21%), Gaps = 90/359 (25%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEILGYKTNI--------------------------- 59
PV W + ++LEE+LGY +I
Sbjct: 1014 PVVVEMPYWLSGQLQASAMRILLEEVLGYAVHISLASAGSGSTARVAAACATLVPEFWYS 1073
Query: 60 ------------KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL 107
K AV +L + + P +K I + +
Sbjct: 1074 EGIRKPEFEEATKSGAVAKNQGALGQTRLFVTASAADPPYDKLIMDHYRSIKLNPAVVAA 1133
Query: 108 QGAKYMLAVNDVGFA--LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFS 165
A D G + + + + +
Sbjct: 1134 LPAAGSWGAPDAAACGGAGWTNASCVNGTYAPPNCDHGTCAEAYFVLPSWSE--SWYEGF 1191
Query: 166 LKGFRLIEASELASFSQIRR----------------------------DQRNNIPAVFLS 197
L L + S SQ++R + P +F
Sbjct: 1192 LTAEGLNQGSTRVRHSQLQRLISRPFSTRLNVTATYVGVSGMADVVEAAHNASRPVLFYW 1251
Query: 198 WEPHPINSD--------------LNIHYLPGGE---EISGFGEASVYTVVRSDYLDKCPN 240
W+P P+ + + + V + L +
Sbjct: 1252 WDPDPLVARVPVLPLAATPFSSACEDRHAGDPALSGANCLMNVDMLKAVAHAATLQADAS 1311
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQD--RQFVGRTMLRTHPDLLKNWLIGVTTFDGQ 297
++ + MM L D + +R + + W+ T G
Sbjct: 1312 LATFFAGYGADNDRQKAMMALETRGGGDLGVEDAACAWVRANEPAWRAWVTATTCAPGS 1370
>gi|28211071|ref|NP_782015.1| taurine-binding periplasmic protein precursor [Clostridium tetani
E88]
gi|28203510|gb|AAO35952.1| taurine-binding periplasmic protein precursor [Clostridium tetani
E88]
Length = 344
Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 42/305 (13%), Positives = 86/305 (28%), Gaps = 41/305 (13%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP-----------VRFADTGWTDIAATTAMTSVILE 50
K+LA + LT + + +S P V + + E
Sbjct: 4 KKVLANVIMLTIIATLFVGCKNSKEPANKASSNLPKVVNIGTQQMPNDEKIA-IAKGFFE 62
Query: 51 EILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGA 110
E LG K NI ++ K ID + + + + + E L
Sbjct: 63 EELGIKVNIVEFNAGDIRNAMIAKNIDFAL--LGSASATLGIASGMDAEVIWIHEVLGD- 119
Query: 111 KYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
+ K++ K ++ + + +
Sbjct: 120 ----------AERLVAKTNSNINSIKDITGKKIATP---FSTTAHYSLLKALELNNISQK 166
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYT-V 229
+ S I + +WEP + L ++++ G + +
Sbjct: 167 DVTI-YDMQMSDIYAAWKRGDIDAAYAWEPTLSDLLKEGKVLVSSKDLTKKGIVTSNVEI 225
Query: 230 VRSDYLDKCPN-ISRLLKN----IKFSVALENEMMKLILNN-KQDRQFVGRT-----MLR 278
VR ++ +K P+ +++ +K IK ++E K I N + + L
Sbjct: 226 VRREFAEKYPDIVTKYIKAVNKSIKLYNENQSEATKTIANALHITEEDALKQMQGSIWLT 285
Query: 279 THPDL 283
L
Sbjct: 286 AEQQL 290
>gi|33602541|ref|NP_890101.1| hypothetical protein BB3566 [Bordetella bronchiseptica RB50]
gi|33576980|emb|CAE34060.1| putative exported protein [Bordetella bronchiseptica RB50]
Length = 324
Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 38/261 (14%), Positives = 81/261 (31%), Gaps = 28/261 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGW-TDIAATTAMTSVILEEILGYKTNI 59
M + L + A + + +R TD + G KT I
Sbjct: 1 MKSRICRRLAGALLGVVAACASQAQDTIRLGLQAVPTDELYQARDWAQ----PYGLKTEI 56
Query: 60 -KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ + ++ +D+ G + +A E + A G +Y + V
Sbjct: 57 STYSSAGDSLKAFLAGRVDVVSG--GAARLVTMAAKQPEVFYIVAANQYGGDRYGIIVGP 114
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
I + K G+ G+ + ++ + N+ S K FR +
Sbjct: 115 EAPYKSIADLKG----------KKIGVVSGSGAHGTLMLYLEKNQLSPKDFRFVN----M 160
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
I + L+WEPH +++N + + +V +Y K
Sbjct: 161 KVEDIAAAVNRGVVDAGLAWEPHVALAEVNGAVKRIQSMKGVNESPN-FILVNREYAGKH 219
Query: 239 PNI-SRLLKNIKFSVALENEM 258
P ++ + ++ +++
Sbjct: 220 PEAVAKYIASMI----DMSQL 236
>gi|289565141|ref|ZP_06445594.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecium D344SRF]
gi|289163148|gb|EFD10995.1| glycine betaine/carnitine/choline ABC transporter [Enterococcus
faecium D344SRF]
Length = 324
Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 2/91 (2%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL-- 61
LA + L Y + A + M ++E+ + +K
Sbjct: 212 TLAAVVCLFGGVSLYQSALFKNETITIAGKLGAEPEILIQMYKELIEDNTKTEVELKPNF 271
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIA 92
F +L IDI+ + LE +
Sbjct: 272 GKTSFLFNALDQGQIDIYPEFTGTVLESLVK 302
>gi|81244266|gb|ABB64974.1| taurine transport system periplasmic protein [Shigella boydii
Sb227]
Length = 339
Score = 53.7 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/245 (11%), Positives = 64/245 (26%), Gaps = 22/245 (8%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRS 70
++++ V A + A + G + K + R+
Sbjct: 28 LLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQ-AGNTFAKESGASVDWRKFDSGASIVRA 86
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD 130
L + + I P E + + G L V
Sbjct: 87 LASGDVQIGNLGSSPLAVAASQQVPIE---VFLLASKLGNSEALVVKKTISKP------- 136
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
++L K + + + +L + + L ++ I +
Sbjct: 137 -----EDLIGKRIAVPFISTTHYSLLAALKHWGIKLGQVEIVNLQPP----AIIAAWQRG 187
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKNIK 249
W P + + L E++ +G ++ VVR D+ +K P + +
Sbjct: 188 DIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPEVVKAFAKSA 247
Query: 250 FSVAL 254
Sbjct: 248 IDAQQ 252
>gi|33592073|ref|NP_879717.1| hypothetical protein BP0913 [Bordetella pertussis Tohama I]
gi|33571717|emb|CAE41216.1| putative exported protein [Bordetella pertussis Tohama I]
gi|332381489|gb|AEE66336.1| hypothetical protein BPTD_0910 [Bordetella pertussis CS]
Length = 324
Score = 53.7 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 38/261 (14%), Positives = 81/261 (31%), Gaps = 28/261 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGW-TDIAATTAMTSVILEEILGYKTNI 59
M + L + A + + +R TD + G KT I
Sbjct: 1 MKSRICRRLAGALLGVVAACASQAQDTIRLGLQAVPTDELYQARDWAQ----PYGLKTEI 56
Query: 60 -KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ + ++ +D+ G + +A E + A G +Y + V
Sbjct: 57 STYSSAGDSLKAFLAGRVDVVSG--GAARLVTMAAKQPEVFYIVAANQYGGDRYGIIVGP 114
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
I + K G+ G+ + ++ + N+ S K FR +
Sbjct: 115 EAPYKSIADLKG----------KKIGVVSGSGAHGTLMLYLEKNQLSPKDFRFVN----M 160
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
I + L+WEPH +++N + + +V +Y K
Sbjct: 161 KVEDIAAAVNRGVVDAGLAWEPHVALAEVNGAVKRIQSMKGVNESPN-FILVNREYAGKH 219
Query: 239 PNI-SRLLKNIKFSVALENEM 258
P ++ + ++ +++
Sbjct: 220 PEAVAKYIASMI----DMSQL 236
>gi|312139012|ref|YP_004006348.1| ABC transporter substrate-binding protein [Rhodococcus equi 103S]
gi|311888351|emb|CBH47663.1| putative ABC transporter substrate binding lipoprotein [Rhodococcus
equi 103S]
Length = 342
Score = 53.7 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/297 (9%), Positives = 70/297 (23%), Gaps = 44/297 (14%)
Query: 1 MYKILAVCLFLTTFS---ISYARDADSCTPVRFADTGWTDIAATTAMTSVILE---EILG 54
+ ++LA + + A DS +RFA WT T + + E G
Sbjct: 7 LRRVLATSAIVASAMSILTGCASSDDSGDTIRFA-LDWTPNTNHTGLYVALQEGYFADAG 65
Query: 55 YKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
+ + + + + A + + G +
Sbjct: 66 LNVEVLPYNNTSPDTLVDAGNAEFGTSFQDSATFSRAAGAQTVSVLAPLQHWATG----I 121
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
V ++L K Y + + +I N+ + ++
Sbjct: 122 GVRADRAD---------LASPRDLDGKTYAGFGDPGERETLRQVIRNDGGTGDFETVVLG 172
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE------ASVYT 228
+ +S+ + + + ++
Sbjct: 173 ------TSAYEAVYGGQADFTVSY---FAWEGVEAARRGTPMRYFHYTDFGFPDAYAIVV 223
Query: 229 VVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLK 285
+L + P +R + + D + ++ +P +
Sbjct: 224 NGNEKWLAEHPEQARKF---------VQALQRGYQVAADDPDRGAKALIDANPGVFS 271
>gi|318059076|ref|ZP_07977799.1| putative glycine betaine ABC transporter substrate-binding and
permease component [Streptomyces sp. SA3_actG]
Length = 394
Score = 53.3 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 12/87 (13%), Positives = 27/87 (31%), Gaps = 10/87 (11%)
Query: 4 ILAVCLFLTTFSISY---------ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
++ + L + A + + W + A+T + ILE+ G
Sbjct: 308 VVILGLVAGGMGVFGGSDTVKTVDATNVGKGKTISVGYIPWDEGVASTFLWKEILEQR-G 366
Query: 55 YKTNIKLLAVPVTFRSLKNKGIDIFMG 81
+K + + + + ID
Sbjct: 367 FKVDARQYEAGSLYTGMAGGQIDFQTD 393
>gi|238061445|ref|ZP_04606154.1| substrate-binding region of ABC-type glycine betaine transport
system [Micromonospora sp. ATCC 39149]
gi|237883256|gb|EEP72084.1| substrate-binding region of ABC-type glycine betaine transport
system [Micromonospora sp. ATCC 39149]
Length = 379
Score = 53.3 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/215 (11%), Positives = 53/215 (24%), Gaps = 30/215 (13%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFR-SLKNK 74
++ S + +T+ + + L GY+ ++ + + +L+
Sbjct: 168 VTQGIAKGSGGAIVIGAGNFTESRTIAELYRIALTAA-GYQVEVQQIGNRELYEPALEKG 226
Query: 75 GIDIFMGYWYPSLE-----------------------KFIAPYLEEGSIKLVAENLQGAK 111
I + Y E + E+ I A + +
Sbjct: 227 KIQVVPEYAATMAEFLNTKANGKDAQPVSSPELDKTVAALKAAGEKAGIAFGAPSAAQDQ 286
Query: 112 YMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL-DMINNNKFSLKGFR 170
AV S K A + P + ++ F F
Sbjct: 287 NAFAVTKAFADKYGVSTLSDLAAKCSGSATVLAGPPECPQRPKCQAGLVEVYDFKAGSF- 345
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINS 205
+S Q + + +V L + +
Sbjct: 346 ---SSLDTGGPQTKNALKTGSASVGLVFSSDGALA 377
>gi|320164318|gb|EFW41217.1| hypothetical protein CAOG_06349 [Capsaspora owczarzaki ATCC 30864]
Length = 749
Score = 52.9 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/205 (12%), Positives = 64/205 (31%), Gaps = 13/205 (6%)
Query: 26 TPVRFADTGWTDIAATTAMTSVILEEILGYKTNI-KLLAVPVTFRSLKNKGIDIFMGYWY 84
P+ W A + + ++LEE LG TN + F +L + D+ M +
Sbjct: 36 EPINVVANNWDSSATSALIAKILLEEKLGLPTNTFTYDSYDDAFEALSSGTGDLLMEAYP 95
Query: 85 PSLEKFIAPYLEEGS-IKLVAENLQGAKYMLAVNDVGFA--LGIKSYQDIAKYKKELGAK 141
+++ + Y+++ ++ + + + + + ++SY + +
Sbjct: 96 LRVKELVDVYVKQRRTVENAGPSGMTGETGWYIPNYVWEINPVMESYIAFYDERIQSIFH 155
Query: 142 IYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL-ASFSQIRRDQRNNIPAVFLSWEP 200
+ I G I+N + E A + + + +
Sbjct: 156 LDVIPEG--------YQIDNTTLRSAVDEIDSILEGPACNAALNASLVAADCTLAVEAHV 207
Query: 201 HPINSDLNIHYLPGGEEISGFGEAS 225
H + N+ +A
Sbjct: 208 HYLRERANLKDEGEPITFWTMPDAW 232
Score = 45.6 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 11/120 (9%), Positives = 37/120 (30%), Gaps = 14/120 (11%)
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLP--------------GGEEISG 220
+ A + P + +PH + +D++ L G
Sbjct: 262 TMNAMVEVTKNAFLARQPFIQYWTKPHFVFADISPALLRRVQLPEYDSTCNVSNASYRCG 321
Query: 221 FGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ + V V ++ DK + + ++ ++ ++ + + + + + +
Sbjct: 322 YQDEQVLKFVSAELADKNSVADDFVHHFTYTSQDQSNILGQVFFSGKTLEEATCEWVIAN 381
>gi|291278189|gb|ADD91576.1| venus kinase receptor 2 [Schistosoma mansoni]
Length = 1641
Score = 52.9 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 36/272 (13%), Positives = 74/272 (27%), Gaps = 11/272 (4%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEILGY-KTNIKLLAVPVTFRSLKN-KGIDIFMGYWY 84
+R T + + ++ E LGY K L+ SLK + +
Sbjct: 47 TLRLEVTNNPEHWIVNYLFEILARERLGYTKIEFVLIEDSNISSSLKRLQCPNTQCLKLP 106
Query: 85 PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD--IAKYKKELGAKI 142
+ +G++K A+ + + L +S + + +
Sbjct: 107 EIHLNLLLWLPLDGNVKFWAKPSSVTDHGPLGPIRSWKLLTQSCYNKSHLRGNPNYTSLK 166
Query: 143 YGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWE-PH 201
Y + + + I + N+ + S+ P
Sbjct: 167 YDCSSTVDTVSQNYSGYQTESVQNSDLLNNHSLLSGKSVTILDFELNSTCLRYNSYSIPP 226
Query: 202 PINSDLNIHYLPGGEEISGFGE-ASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMK 260
P + + E V + P I +L + S E++
Sbjct: 227 PPLCSTDTKSTSTNSYQYCYTESYQAVKVTWAKLRTAAPQIFQLASKMYMSHDELGELVH 286
Query: 261 LILNN-----KQDRQFVGRTMLRTHPDLLKNW 287
L + + + V LR +P K+W
Sbjct: 287 SALLDSNIDRQSTYKQVACRWLRQNPIKWKSW 318
>gi|262201341|ref|YP_003272549.1| glycine betaine ABC transporter substrate-binding protein [Gordonia
bronchialis DSM 43247]
gi|262084688|gb|ACY20656.1| Substrate-binding region of ABC-type glycine betaine transport
system [Gordonia bronchialis DSM 43247]
Length = 351
Score = 52.9 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 36/249 (14%), Positives = 72/249 (28%), Gaps = 23/249 (9%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDI--AATTAMTSVILEEIL-GYKTN-IKL 61
A+ L +T S+ ++ DS +R A + LE+ L GY K
Sbjct: 19 ALILVVTGCSVDHSGQDDSKPTIRLAYQAFPSGDLIVKNNRW---LEDALPGYNIKWTKF 75
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ + +D P AP + V +
Sbjct: 76 DSGADINTAFVAGEVDFAAIGSSPVARGLSAPLNIAYQVAFVLDVAGDN----------- 124
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
+ +L K + + +L +N K LI+ AS +
Sbjct: 125 EALVARNGTGINTIADLRGKKVATAFASTAHYSLLAALNQAGVDPKDVDLIDLQPQASLA 184
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYT-VVRSDYLDKCPN 240
+ +W P + L E++ G+ ++ VV + + P+
Sbjct: 185 ----AWKRGDVDAVYTWLPTLDELRKDGKTLIASRELATAGKPTLDLGVVSTAFAKDHPD 240
Query: 241 ISRLLKNIK 249
+ + ++
Sbjct: 241 VVDTWRQVQ 249
>gi|134099332|ref|YP_001104993.1| putative glycine betaine transport ATP-binding protein
[Saccharopolyspora erythraea NRRL 2338]
gi|133911955|emb|CAM02068.1| putative glycine betaine transport ATP-binding protein
[Saccharopolyspora erythraea NRRL 2338]
Length = 157
Score = 52.9 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 15/126 (11%), Positives = 36/126 (28%), Gaps = 15/126 (11%)
Query: 176 ELASFSQIRRD---QRNNIPAVFLSWEP----------HPINSDLNIHYLPGGEEISGFG 222
+ + R V + + + S + H G +I+
Sbjct: 28 SEGVTAAVIDASFQVRQGETFVVMGLSGSGKSTLIRMLNGLLSPTSGHVHVDGRDITAMS 87
Query: 223 EASVYTV-VRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNN-KQDRQFVGRTMLRTH 280
+ V R + P+++ +K +K + A + +M + R +
Sbjct: 88 RKELRLVPGRRGFAKDFPDLTATIKKLKLNDAQMSSLMDSVARAPHGQEDQAARQWADQN 147
Query: 281 PDLLKN 286
P +
Sbjct: 148 PQAVAA 153
>gi|161984983|ref|YP_406802.2| taurine transporter substrate binding subunit [Shigella boydii
Sb227]
gi|320184672|gb|EFW59466.1| Taurine-binding periplasmic protein TauA [Shigella flexneri CDC
796-83]
gi|332098656|gb|EGJ03622.1| taurine ABC transporter, periplasmic binding protein [Shigella
boydii 3594-74]
Length = 320
Score = 52.9 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 29/245 (11%), Positives = 64/245 (26%), Gaps = 22/245 (8%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRS 70
++++ V A + A + G + K + R+
Sbjct: 9 LLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQ-AGNTFAKESGASVDWRKFDSGASIVRA 67
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD 130
L + + I P E + + G L V
Sbjct: 68 LASGDVQIGNLGSSPLAVAASQQVPIE---VFLLASKLGNSEALVVKKTISKP------- 117
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
++L K + + + +L + + L ++ I +
Sbjct: 118 -----EDLIGKRIAVPFISTTHYSLLAALKHWGIKLGQVEIVNLQPP----AIIAAWQRG 168
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKNIK 249
W P + + L E++ +G ++ VVR D+ +K P + +
Sbjct: 169 DIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPEVVKAFAKSA 228
Query: 250 FSVAL 254
Sbjct: 229 IDAQQ 233
>gi|318075726|ref|ZP_07983058.1| putative glycine betaine ABC transporter substrate-binding and
permease component [Streptomyces sp. SA3_actF]
Length = 392
Score = 52.5 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 12/86 (13%), Positives = 27/86 (31%), Gaps = 10/86 (11%)
Query: 4 ILAVCLFLTTFSISY---------ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
++ + L + A + + W + A+T + ILE+ G
Sbjct: 308 VVILGLVAGGMGVFGGSDTVKTVDATNVGKGKTISVGYIPWDEGVASTFLWKEILEQR-G 366
Query: 55 YKTNIKLLAVPVTFRSLKNKGIDIFM 80
+K + + + + ID
Sbjct: 367 FKVDARQYEAGSLYTGMAGGQIDFQT 392
>gi|256081721|ref|XP_002577116.1| tyrosine kinase [Schistosoma mansoni]
gi|238662412|emb|CAZ33353.1| tyrosine kinase [Schistosoma mansoni]
Length = 1556
Score = 52.5 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 16/94 (17%), Positives = 28/94 (29%), Gaps = 6/94 (6%)
Query: 200 PHPINSDLNIHYLPGGEEISGFGE-ASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEM 258
P P + + E V + P I +L + S E+
Sbjct: 140 PPPPLCSTDTKSTSTNSYQYCYTESYQAVKVTWAKLRTAAPQIFQLASKMYMSHDELGEL 199
Query: 259 MKLILNN-----KQDRQFVGRTMLRTHPDLLKNW 287
+ L + + + V LR +P K+W
Sbjct: 200 VHSALLDSNIDRQSTYKQVACRWLRQNPIKWKSW 233
>gi|182419223|ref|ZP_02950476.1| taurine-binding periplasmic protein [Clostridium butyricum 5521]
gi|237667980|ref|ZP_04527964.1| taurine-binding periplasmic protein (Sulfate starvation-induced
protein 1) (SSI1) [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182376863|gb|EDT74434.1| taurine-binding periplasmic protein [Clostridium butyricum 5521]
gi|237656328|gb|EEP53884.1| taurine-binding periplasmic protein (Sulfate starvation-induced
protein 1) (SSI1) [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 344
Score = 52.5 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 44/284 (15%), Positives = 85/284 (29%), Gaps = 42/284 (14%)
Query: 3 KILAVCLFLTTFSISYA-------RDADSCTPVRFAD--TGWTDIAATTAMTSVILEEIL 53
K +A+ ++T + S V + A EE +
Sbjct: 8 KTIAILCTVSTMFMGCGSSKSKDVAADGSPKVVNIGTQQMPNDEGIAKA---KKYFEEEM 64
Query: 54 GYKTNIKLLAVP-VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKY 112
G + N+ +L + ID + P+ + + + E L G
Sbjct: 65 GVEINLVEFDSGKDVNNALASGSIDFGLLGSSPATLGIANGA--DVELIWIHEVL-GKVE 121
Query: 113 MLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
LAV + IK L K + + +L+ + N S K L
Sbjct: 122 SLAVRNESNIASIKD----------LIGKKIATPFASTAHYSLLNALKLNGISEKDVEL- 170
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG--EASVYTVV 230
+ I + WEP N + L +++ G ++V VV
Sbjct: 171 ---LDMQPADIYAAWQRGDIDAAYVWEPTLANLLSDGKILLSSADMAEKGILTSNVE-VV 226
Query: 231 RSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGR 274
R ++ +K P++ + K + K+++ +
Sbjct: 227 RKEFSEKYPDLV---------TKYVKALNKGVNLYKENQDEAVK 261
>gi|108797086|ref|YP_637283.1| substrate-binding region of ABC-type glycine betaine transport
system [Mycobacterium sp. MCS]
gi|119866171|ref|YP_936123.1| substrate-binding region of ABC-type glycine betaine transport
system [Mycobacterium sp. KMS]
gi|108767505|gb|ABG06227.1| Substrate-binding region of ABC-type glycine betaine transport
system [Mycobacterium sp. MCS]
gi|119692260|gb|ABL89333.1| Substrate-binding region of ABC-type glycine betaine transport
system [Mycobacterium sp. KMS]
Length = 341
Score = 52.5 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 34/278 (12%), Positives = 73/278 (26%), Gaps = 41/278 (14%)
Query: 13 TFSISYARDADSCTPVRFADTGWTDI--AATTAMTSVILEEIL-GYKTN-IKLLAVPVTF 68
S+ + +R A + LE+ L Y K +
Sbjct: 18 GCSVDTSGQDAGKQTIRIAYQSFPSGDLIVKNNRW---LEDALPDYNIKWTKFDSGADVN 74
Query: 69 RSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSY 128
+ K +D P AP + V + +
Sbjct: 75 TAFIAKEVDFGALGSSPVARGLSAPLNIPYKVAFVLDVAGDN-----------EALVARN 123
Query: 129 QDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQR 188
+L K G + + +L ++ N S +L++ A +
Sbjct: 124 GSGVNTIADLRGKRVGTPFASTAHYSLLAALDQNGLSPNDVQLVDLQPQAILA----AFD 179
Query: 189 NNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY-TVVRSDYLDKCPNISRLLKN 247
SW P N L +++ G+ ++ VV ++ + P++ + +
Sbjct: 180 RGDIDAGYSWLPTLDQLRRNGKDLITSRQLARDGKPTLDLAVVADEFAEAHPDVVDIWRQ 239
Query: 248 IKFSVALENEMMKLILNN------------KQDRQFVG 273
E + +I ++ + V
Sbjct: 240 ------QEARALTVIKDDPDAAAKAIAAEIGLTPEEVA 271
>gi|169629263|ref|YP_001702912.1| ABC transporter periplasmic protein [Mycobacterium abscessus ATCC
19977]
gi|169241230|emb|CAM62258.1| Probable ABC transporter, periplasmic [Mycobacterium abscessus]
Length = 342
Score = 52.5 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 40/319 (12%), Positives = 79/319 (24%), Gaps = 42/319 (13%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSV--ILEEIL-GYKTNIK 60
+ L+ +I ++ + +R + + LE L Y
Sbjct: 10 LAVAMTMLSGCAIDHSGLQNGKPTIRIGYQNFPSGDL---VVKQNRWLETALPDYNIKWT 66
Query: 61 LLAVP-VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ + +D P AP + V +
Sbjct: 67 RFDSGADINTAFIARELDFGALGSSPFARGLSAPLNIPYRVAFVLDVAGDN--------- 117
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+ S + L K G + + +L + N S RL++ A+
Sbjct: 118 --EALVASNRSGVSTIAGLKGKRVGTPFASTAHYSLLSALAQNGLSASDVRLVDLQPQAA 175
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY-TVVRSDYLDKC 238
+ +W P N L +++ G ++ VV + + D
Sbjct: 176 LA----AFDRGDVDAVYTWLPTVDQVRKNGRDLITSRQLAADGRPTLDLAVVANAFADAH 231
Query: 239 PNISRLLKNIK------FSVALENEMMKLILNNKQDRQFVGRT-----MLRTHPDLL--K 285
P I + + + N Q V L P +
Sbjct: 232 PEIVDAWRRQQARALRLIHDDPSAAAKAIAAENGLTPQEVADQLKQGIYLT--PAEVGSA 289
Query: 286 NWLIGVTTFDGQDPSRQLE 304
WL G+ ++
Sbjct: 290 KWL----GEQGKPGHIAVD 304
>gi|83310953|ref|YP_421217.1| ABC-type nitrate/sulfonate/bicarbonate transport systems,
periplasmic components [Magnetospirillum magneticum
AMB-1]
gi|82945794|dbj|BAE50658.1| ABC-type nitrate/sulfonate/bicarbonate transport systems,
periplasmic components [Magnetospirillum magneticum
AMB-1]
Length = 305
Score = 52.5 bits (124), Expect = 9e-05, Method: Composition-based stats.
Identities = 29/277 (10%), Positives = 72/277 (25%), Gaps = 37/277 (13%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M ++LA+ + L + A+ +R + T + L G +
Sbjct: 1 MTRLLALAVTLFLALPAAAQ-----DKLRLGYPAGMNGQIVTILEKANLAAARGQEVEYT 55
Query: 61 LLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
P + +D+ + P + + + + A+
Sbjct: 56 FFQNGPPMMEAFAAGQLDVAVTSLMPLATFAARLPGQAVIVSGLGHSS------YALLVK 109
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+ K K G+ LD++ + + +
Sbjct: 110 AASPVAKLADLKGKRIAVS-----------FGSDSHLDLLASLAEAGLDPKTDVELLNIQ 158
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+++ + + +P + + G I + V + R+ YL+K P
Sbjct: 159 PAELPVALEKDHADAIVIRQPQVL----RLQQSQGARLIKSWPHTYVV-LARAAYLEKHP 213
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
+ R L + + + +
Sbjct: 214 DAIRSLT---------GALADSVAYIRARPEQAAEWF 241
>gi|291007282|ref|ZP_06565255.1| putative glycine betaine transport ATP-binding protein
[Saccharopolyspora erythraea NRRL 2338]
Length = 127
Score = 52.1 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 15/123 (12%), Positives = 36/123 (29%), Gaps = 15/123 (12%)
Query: 179 SFSQIRRD---QRNNIPAVFLSWEP----------HPINSDLNIHYLPGGEEISGFGEAS 225
+ + R V + + + S + H G +I+
Sbjct: 1 MTAAVIDASFQVRQGETFVVMGLSGSGKSTLIRMLNGLLSPTSGHVHVDGRDITAMSRKE 60
Query: 226 VYTV-VRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNN-KQDRQFVGRTMLRTHPDL 283
+ V R + P+++ +K +K + A + +M + R +P
Sbjct: 61 LRLVPGRRGFAKDFPDLTATIKKLKLNDAQMSSLMDSVARAPHGQEDQAARQWADQNPQA 120
Query: 284 LKN 286
+
Sbjct: 121 VAA 123
>gi|159040214|ref|YP_001539467.1| substrate-binding region of ABC-type glycine betaine transport
system [Salinispora arenicola CNS-205]
gi|157919049|gb|ABW00477.1| Substrate-binding region of ABC-type glycine betaine transport
system [Salinispora arenicola CNS-205]
Length = 378
Score = 52.1 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 21/215 (9%), Positives = 56/215 (26%), Gaps = 30/215 (13%)
Query: 16 ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFR-SLKNK 74
++ + S + +++ + ++L GY+ ++ + + +L+
Sbjct: 167 LTTGVEKGSGGTITVGAANFSESQTLAELYKIVLIAA-GYQAEVQQVGSRELYEPALEKG 225
Query: 75 GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGA-----------------------K 111
I +F Y E + + + + +L +
Sbjct: 226 EIQVFPEYAATMAEFLNTKANGKDAPPVSSPDLDETVAALKAAGAKVNLAFGSPSAAQDQ 285
Query: 112 YMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL-DMINNNKFSLKGFR 170
AV K + P + ++ F F
Sbjct: 286 NAFAVTRAFADKYDVRTLSELAEKCSGQETVLAGPPECPQRPKCQVGLVEVYDFKAGSF- 344
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINS 205
+S A+ Q + + + +V L +
Sbjct: 345 ---SSLDAAGPQTKNALKTGVASVGLVLSSDGALA 376
>gi|325673710|ref|ZP_08153401.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Rhodococcus equi ATCC 33707]
gi|325555731|gb|EGD25402.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Rhodococcus equi ATCC 33707]
Length = 342
Score = 52.1 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/297 (8%), Positives = 69/297 (23%), Gaps = 44/297 (14%)
Query: 1 MYKILAVCLFLTTFS---ISYARDADSCTPVRFADTGWTDIAATTAMTSVILE---EILG 54
+ ++LA + + DS +RFA WT T + + E G
Sbjct: 7 LRRVLATSAIVASAMSILTGCGGSDDSGDTIRFA-LDWTPNTNHTGLYVALQEGYFADAG 65
Query: 55 YKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
+ + + + + A + + G +
Sbjct: 66 LNVEVLPYNNTSPDTLVDAGNAEFGTSFQDSATFSRAAGAQTVSVLAPLQHWATG----I 121
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
V ++L K Y + + +I N+ + ++
Sbjct: 122 GVRADRAD---------LASPRDLDGKTYAGFGDPGERETLRQVIRNDGGTGDFETVVLG 172
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE------ASVYT 228
+ +S+ + + + ++
Sbjct: 173 ------TSAYEAVYGGQADFTVSY---FAWEGVEAARRGTPMRYFHYTDFGFPDAYAIVV 223
Query: 229 VVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLK 285
+L + P +R + + D + ++ +P +
Sbjct: 224 NGNEKWLAEHPEQARKF---------VQALQRGYQVAADDPDRGAKALIDANPGVFS 271
>gi|302870306|ref|YP_003838943.1| substrate-binding region of ABC-type glycine betaine transport
system [Micromonospora aurantiaca ATCC 27029]
gi|315503417|ref|YP_004082304.1| substrate-binding region of abc-type glycine betaine transport
system [Micromonospora sp. L5]
gi|302573165|gb|ADL49367.1| Substrate-binding region of ABC-type glycine betaine transport
system [Micromonospora aurantiaca ATCC 27029]
gi|315410036|gb|ADU08153.1| Substrate-binding region of ABC-type glycine betaine transport
system [Micromonospora sp. L5]
Length = 334
Score = 52.1 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/222 (9%), Positives = 55/222 (24%), Gaps = 30/222 (13%)
Query: 10 FLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFR 69
F + ++ + + +++ + + L GY+ ++ + +
Sbjct: 117 FASANGVTDGIEKGPGGQITVGAGNFSESQTIAELYKIALTAA-GYQVKVQTIGNRELYE 175
Query: 70 -SLKNKGIDIFMGYWYPSLE-----------------------KFIAPYLEEGSIKLVAE 105
+L+ I + Y E + ++ +
Sbjct: 176 PALEKGQIQVVPEYAATMAEFLNTKANGKDAQPVSSPELDKTVAALKTEGDKAGLVFGQP 235
Query: 106 NLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL-DMINNNKF 164
+ + AV S K A + P + ++ F
Sbjct: 236 SQAQDQNAFAVTKAFADKYGVSTLSDLAAKCSGQATVLAGPPECPQRPKCQAGLVEVYDF 295
Query: 165 SLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSD 206
F +S A Q + + +V L + +
Sbjct: 296 KAGSF----SSLDAGGPQTKNALKTGSASVGLVFSSDAALAT 333
Score = 39.4 bits (90), Expect = 0.66, Method: Composition-based stats.
Identities = 5/67 (7%), Positives = 21/67 (31%), Gaps = 4/67 (5%)
Query: 216 EEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVG 273
++ +V + + P + L + K ++ + + +++ Q
Sbjct: 57 DDKKLQNTDNVIPAINAK--AATPQLVAALDKVSAKLDTPKLIQLNRAVDVDRKTPQVAA 114
Query: 274 RTMLRTH 280
+ +
Sbjct: 115 QEFASAN 121
>gi|270487182|ref|ZP_06204256.1| conserved domain protein [Yersinia pestis KIM D27]
gi|270335686|gb|EFA46463.1| conserved domain protein [Yersinia pestis KIM D27]
Length = 141
Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/105 (20%), Positives = 35/105 (33%), Gaps = 6/105 (5%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
+I AV + + S + AD+ VR T+ + + +LE G KT +
Sbjct: 9 RIFAVAAIMLSASSGISHAADN---VRVGSKIDTEGSLLGNIIVQVLEAN-GIKTTNKSQ 64
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAE 105
L A V ++ IDI+ Y F
Sbjct: 65 LGATKVVRGAITAGEIDIYPEYTGNGAFFFSDEQDPAWKSAKAGY 109
>gi|333022881|ref|ZP_08450945.1| putative amino acid ABC transporter amino acid-binding protein
[Streptomyces sp. Tu6071]
gi|332742733|gb|EGJ73174.1| putative amino acid ABC transporter amino acid-binding protein
[Streptomyces sp. Tu6071]
Length = 257
Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/263 (9%), Positives = 70/263 (26%), Gaps = 35/263 (13%)
Query: 44 MTSVILEEILGYKTNIKLLAVPVTFR-SLKNKGIDIFMGY-------------------- 82
M ++L + GY T + ++ + +L++ ID+ Y
Sbjct: 1 MYKLLL-DKAGYHTRLITVSNRELYEPALESGQIDVVPEYAATFADWLNAKKNGADAEPV 59
Query: 83 ---WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
+ + + ++ + AV +L
Sbjct: 60 GSPDLDRTMRRLRALAAARGLDVLDPGRAVDQNAYAVTRAYAREHKLRTLSDLGR-AKLP 118
Query: 140 AKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWE 199
+I + + L + +Q ++ ++ + +
Sbjct: 119 VRIAAGDECATRPYCAPGLKKTYGIDLTAID----PKGLGTTQAKKAVQDGRDQLVATTT 174
Query: 200 PHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYL--DKCPNISRLLKNIKFSVALENE 257
+ + L +++ + VV + L + + A +
Sbjct: 175 TDATLDEFGLVLLRDDKKL--QNADYLVPVVNRSRAGSRRVAAALDRLNKV-LTTADLAD 231
Query: 258 MMKLILNNKQDRQFVGRTMLRTH 280
+ + + + ++ + V R L H
Sbjct: 232 LNRRVDSWRRLPEDVARDYLDRH 254
>gi|15800095|ref|NP_286107.1| taurine transporter substrate binding subunit [Escherichia coli
O157:H7 EDL933]
gi|15829673|ref|NP_308446.1| taurine transporter substrate binding subunit [Escherichia coli
O157:H7 str. Sakai]
gi|168761557|ref|ZP_02786564.1| taurine ABC transporter, periplasmic taurine-binding protein
[Escherichia coli O157:H7 str. EC4501]
gi|217325344|ref|ZP_03441428.1| taurine ABC transporter, periplasmic taurine-binding protein
[Escherichia coli O157:H7 str. TW14588]
gi|12513206|gb|AAG54715.1|AE005216_3 taurine transport system periplasmic protein [Escherichia coli
O157:H7 str. EDL933]
gi|13359876|dbj|BAB33842.1| taurine transport system periplasmic protein [Escherichia coli
O157:H7 str. Sakai]
gi|189368076|gb|EDU86492.1| taurine ABC transporter, periplasmic taurine-binding protein
[Escherichia coli O157:H7 str. EC4501]
gi|209744516|gb|ACI70565.1| taurine transport system periplasmic protein [Escherichia coli]
gi|217321565|gb|EEC29989.1| taurine ABC transporter, periplasmic taurine-binding protein
[Escherichia coli O157:H7 str. TW14588]
gi|320192775|gb|EFW67415.1| Taurine-binding periplasmic protein TauA [Escherichia coli O157:H7
str. EC1212]
gi|326341123|gb|EGD64915.1| Taurine-binding periplasmic protein TauA [Escherichia coli O157:H7
str. 1044]
Length = 320
Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/245 (11%), Positives = 63/245 (25%), Gaps = 22/245 (8%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRS 70
++++ V A + A + G + K + R+
Sbjct: 9 LLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQ-ADNTFAKESGATVDWRKFDSGASIVRA 67
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD 130
L + + I P E + + G L V
Sbjct: 68 LASGDVQIGNLGSSPLAVAASQQVPIE---VFLLASKLGNSEALVVKKTISKP------- 117
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
++L K + + + +L + + ++ I +
Sbjct: 118 -----EDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNLQPP----AIIAAWQRG 168
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKNIK 249
W P + + L E++ +G ++ VVR D+ +K P + +
Sbjct: 169 DIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPEVVKAFSKSA 228
Query: 250 FSVAL 254
Sbjct: 229 IDAQQ 233
>gi|22126871|ref|NP_670294.1| hypothetical protein y2994 [Yersinia pestis KIM 10]
gi|108806904|ref|YP_650820.1| hypothetical protein YPA_0907 [Yersinia pestis Antiqua]
gi|108812941|ref|YP_648708.1| hypothetical protein YPN_2781 [Yersinia pestis Nepal516]
gi|167466728|ref|ZP_02331432.1| quaternary amine uptake ABC transporter (QAT) family,
substrate-binding protein [Yersinia pestis FV-1]
gi|229841139|ref|ZP_04461298.1| Glycine betaine-binding protein [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229843243|ref|ZP_04463389.1| Glycine betaine-binding protein [Yersinia pestis biovar Orientalis
str. India 195]
gi|229894139|ref|ZP_04509325.1| Glycine betaine-binding protein [Yersinia pestis Pestoides A]
gi|229903373|ref|ZP_04518486.1| Glycine betaine-binding protein [Yersinia pestis Nepal516]
gi|294503212|ref|YP_003567274.1| hypothetical protein YPZ3_1102 [Yersinia pestis Z176003]
gi|21959905|gb|AAM86545.1|AE013901_6 hypothetical [Yersinia pestis KIM 10]
gi|108776589|gb|ABG19108.1| hypothetical protein YPN_2781 [Yersinia pestis Nepal516]
gi|108778817|gb|ABG12875.1| hypothetical protein YPA_0907 [Yersinia pestis Antiqua]
gi|229679143|gb|EEO75246.1| Glycine betaine-binding protein [Yersinia pestis Nepal516]
gi|229689590|gb|EEO81651.1| Glycine betaine-binding protein [Yersinia pestis biovar Orientalis
str. India 195]
gi|229697505|gb|EEO87552.1| Glycine betaine-binding protein [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229704024|gb|EEO91037.1| Glycine betaine-binding protein [Yersinia pestis Pestoides A]
gi|262361251|gb|ACY57972.1| hypothetical protein YPD4_1063 [Yersinia pestis D106004]
gi|262365212|gb|ACY61769.1| hypothetical protein YPD8_1084 [Yersinia pestis D182038]
gi|294353671|gb|ADE64012.1| hypothetical protein YPZ3_1102 [Yersinia pestis Z176003]
gi|320015965|gb|ADV99536.1| Glycine betaine-binding protein [Yersinia pestis biovar Medievalis
str. Harbin 35]
Length = 155
Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/137 (18%), Positives = 40/137 (29%), Gaps = 10/137 (7%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
+I AV + + S + AD+ VR T+ + + +LE G KT +
Sbjct: 9 RIFAVAAIMLSASSGISHAADN---VRVGSKIDTEGSLLGNIIVQVLEAN-GIKTTNKSQ 64
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAE----NLQGAKYMLAV 116
L A V ++ IDI+ Y F L K L
Sbjct: 65 LGATKVVRGAITAGEIDIYPEYTGNGAFFFSDEQDPAWKSAKAGYEKVKALDYEKNKLVW 124
Query: 117 NDVGFALGIKSYQDIAK 133
A +
Sbjct: 125 LSPAPANNTWTIAVRKD 141
>gi|242006080|ref|XP_002423884.1| tyrosine protein kinase, putative [Pediculus humanus corporis]
gi|212507130|gb|EEB11146.1| tyrosine protein kinase, putative [Pediculus humanus corporis]
Length = 1321
Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/327 (10%), Positives = 76/327 (23%), Gaps = 80/327 (24%)
Query: 40 ATTAMTSVILEEILGYK-TNIK----LLAVPVTFRSLKNKGIDIF--------------- 79
T+ + + L+E++GY I + L++K
Sbjct: 59 ITSNIFKIFLDEVIGYDSVEIVQRKDYFNSTLALSRLQDKRAYYHSYYNDTLRCPVAAIN 118
Query: 80 MGYWYPSLEKFIAPYLEEGSIK-LVAENLQGAKYMLAVNDVGFALGIKSYQD-------- 130
+ W + E ++ + + ++ + + S
Sbjct: 119 LEIWITTYESLKEEIYQKKKLPPQLGSVAPPGRFGWFIPKKFSNSALDSIHWKVFQNKEL 178
Query: 131 --------------------IAKYKKELGAKIYGIEPGNEGNQRILDMI----------- 159
+ K E G ++
Sbjct: 179 AQKYGVDETILETEIREFAIDPETKNYFCPSPI-CEDGVFVMEKCQSRKGRSPCAMLFAG 237
Query: 160 ----------NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNI 209
+ L + L + + + R + P V LSW P I +
Sbjct: 238 HYDVTKFVIEDIKSLDLFVSVIWLGPNLKNVTSRLIENRKDQPVVILSWTPSIITASGEF 297
Query: 210 HYLPGGEEI--------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKL 261
+ + + + ++ FS + ++K
Sbjct: 298 VSVVFPPCQNEKPLTPGCNYELQRLVKSTSRTLAQGARQAWEAVNDMYFSDSQYRGLLKD 357
Query: 262 ILNN-KQDRQFVGRTMLRTHPDLLKNW 287
L N Q + ++TH K+W
Sbjct: 358 YLANLSLSHQDIACNWMKTHQSTWKHW 384
>gi|260219640|emb|CBA26485.1| hypothetical protein Csp_E35730 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 81
Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 4/77 (5%)
Query: 204 NSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKL 261
+ L + + + + + +VR + L + P I+ +L I +
Sbjct: 1 MAALGLVVMEDPKGV--QPVYAPAPLVREEVLKRYPAIATVLAPIFKSLDGPTLQTLNAR 58
Query: 262 ILNNKQDRQFVGRTMLR 278
I QD + V L+
Sbjct: 59 IQLEGQDPRKVATAYLQ 75
>gi|300818314|ref|ZP_07098525.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli MS 107-1]
gi|300820400|ref|ZP_07100552.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli MS 119-7]
gi|309794913|ref|ZP_07689334.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli MS 145-7]
gi|331676029|ref|ZP_08376741.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli H591]
gi|332281508|ref|ZP_08393921.1| taurine transport system periplasmic protein [Shigella sp. D9]
gi|300527185|gb|EFK48254.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli MS 119-7]
gi|300529205|gb|EFK50267.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli MS 107-1]
gi|308121566|gb|EFO58828.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli MS 145-7]
gi|324016638|gb|EGB85857.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli MS 117-3]
gi|331076087|gb|EGI47369.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli H591]
gi|332103860|gb|EGJ07206.1| taurine transport system periplasmic protein [Shigella sp. D9]
Length = 339
Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/245 (11%), Positives = 63/245 (25%), Gaps = 22/245 (8%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRS 70
++++ V A + A + G + K + R+
Sbjct: 28 LLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQ-ADNTFAKESGATVDWRKFDSGASIVRA 86
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD 130
L + + I P E + + G L V
Sbjct: 87 LASGDVQIGNLGSSPLAVAASQQVPIE---VFLLASKLGNSEALVVKKTISKP------- 136
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
++L K + + + +L + + ++ I +
Sbjct: 137 -----EDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNLQPP----AIIAAWQRG 187
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKNIK 249
W P + + L E++ +G ++ VVR D+ +K P + +
Sbjct: 188 DIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPEVVKAFAKSA 247
Query: 250 FSVAL 254
Sbjct: 248 IDAQQ 252
>gi|301647279|ref|ZP_07247096.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli MS 146-1]
gi|331640880|ref|ZP_08342015.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli H736]
gi|1657560|gb|AAB18088.1| substrate-binding protein [Escherichia coli str. K-12 substr.
MG1655]
gi|301074567|gb|EFK89373.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli MS 146-1]
gi|331037678|gb|EGI09898.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli H736]
Length = 339
Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/245 (11%), Positives = 63/245 (25%), Gaps = 22/245 (8%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRS 70
++++ V A + A + G + K + R+
Sbjct: 28 LLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQ-ADNTFAKESGATVDWRKFDSGASIVRA 86
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD 130
L + + I P E + + G L V
Sbjct: 87 LASGDVQIGNLGSSPLAVAASQQVPIE---VFLLASKLGNSEALVVKKTISKP------- 136
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
++L K + + + +L + + ++ I +
Sbjct: 137 -----EDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNLQPP----AIIAAWQRG 187
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKNIK 249
W P + + L E++ +G ++ VVR D+ +K P + +
Sbjct: 188 DIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPEVVKAFAKSA 247
Query: 250 FSVAL 254
Sbjct: 248 IDAQQ 252
>gi|300947991|ref|ZP_07162135.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli MS 116-1]
gi|300452455|gb|EFK16075.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli MS 116-1]
Length = 339
Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/245 (11%), Positives = 64/245 (26%), Gaps = 22/245 (8%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRS 70
++++ V A + A ++ G + K + R+
Sbjct: 28 LLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQ-ADNTFDKESGATVDWRKFDSGASIVRA 86
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD 130
L + + I P E + + G L V
Sbjct: 87 LASGDVQIGNLGSSPLAVAASQQVSIE---VFLLASKLGNSEALVVKKTISKP------- 136
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
++L K + + + +L + + ++ I +
Sbjct: 137 -----EDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNLQPP----AIIAAWQRG 187
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKNIK 249
W P + + L E++ +G ++ VVR D+ +K P + +
Sbjct: 188 DIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPEVVKAFAKSA 247
Query: 250 FSVAL 254
Sbjct: 248 IDAQQ 252
>gi|300997450|ref|ZP_07181790.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli MS 200-1]
gi|300304269|gb|EFJ58789.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli MS 200-1]
gi|324010716|gb|EGB79935.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli MS 60-1]
Length = 339
Score = 51.4 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/245 (11%), Positives = 63/245 (25%), Gaps = 22/245 (8%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRS 70
++++ V A + A + G + K + R+
Sbjct: 28 LLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQ-ADNTFAKESGATVDWRKFDSGASIVRA 86
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD 130
L + + I P E + + G L V
Sbjct: 87 LASGDVQIGNLGSSPLAVATSQQVPIE---VFLLASKLGNSEALVVKKTISKP------- 136
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
++L K + + + +L + + ++ I +
Sbjct: 137 -----EDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNLQPP----AIIAAWQRG 187
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKNIK 249
W P + + L E++ +G ++ VVR D+ +K P + +
Sbjct: 188 DIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPEVVKAFAKSA 247
Query: 250 FSVAL 254
Sbjct: 248 IDAQQ 252
>gi|22126870|ref|NP_670293.1| hypothetical protein y2993 [Yersinia pestis KIM 10]
gi|21959904|gb|AAM86544.1|AE013901_5 hypothetical [Yersinia pestis KIM 10]
Length = 68
Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTML 277
+ ++R L PNI LL + ++ I QD + V L
Sbjct: 1 MQPIYAPAPIIREVTLKAHPNIPALLNPVFATLDGPTLQKLNARIAVEGQDAKKVAANYL 60
Query: 278 RTH 280
+ +
Sbjct: 61 KDN 63
>gi|300916136|ref|ZP_07132903.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli MS 115-1]
gi|300924081|ref|ZP_07140075.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli MS 182-1]
gi|300930343|ref|ZP_07145755.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli MS 187-1]
gi|301330782|ref|ZP_07223380.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli MS 78-1]
gi|300416555|gb|EFJ99865.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli MS 115-1]
gi|300419677|gb|EFK02988.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli MS 182-1]
gi|300461803|gb|EFK25296.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli MS 187-1]
gi|300843295|gb|EFK71055.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli MS 78-1]
Length = 339
Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/245 (11%), Positives = 63/245 (25%), Gaps = 22/245 (8%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRS 70
++++ V A + A + G + K + R+
Sbjct: 28 LLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQ-ADNTFAKESGATVDWRKFDSGASIVRA 86
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD 130
L + + I P E + + G L V
Sbjct: 87 LASGDVQIGNLGSSPLAVAASQQVPIE---VFLLASKLGNSEALVVKKTISKP------- 136
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
++L K + + + +L + + ++ I +
Sbjct: 137 -----EDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNLQPP----AIIAAWQRG 187
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKNIK 249
W P + + L E++ +G ++ VVR D+ +K P + +
Sbjct: 188 DIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPEVVKAFAKSA 247
Query: 250 FSVAL 254
Sbjct: 248 IDAQQ 252
>gi|300936347|ref|ZP_07151275.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli MS 21-1]
gi|300458453|gb|EFK21946.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli MS 21-1]
Length = 339
Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/245 (11%), Positives = 63/245 (25%), Gaps = 22/245 (8%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRS 70
++++ V A + A + G + K + R+
Sbjct: 28 LLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQ-ADNTFAKESGATVDWRKFDSGASIVRA 86
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD 130
L + + I P E + + G L V
Sbjct: 87 LASGDVQIGNLGSSPLAVATSQQVPIE---VFLLASKLGNSEALVVKKTISKP------- 136
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
++L K + + + +L + + ++ I +
Sbjct: 137 -----EDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNLQPP----AIIAAWQRG 187
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKNIK 249
W P + + L E++ +G ++ VVR D+ +K P + +
Sbjct: 188 DIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPEVVKAFAKSA 247
Query: 250 FSVAL 254
Sbjct: 248 IDAQQ 252
>gi|324497318|gb|ADY39468.1| glycine/betaine/choline ABC transporter substrate-binding component
[bacterium enrichment culture clone P69-9E]
Length = 148
Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/146 (15%), Positives = 42/146 (28%), Gaps = 25/146 (17%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NI 59
+L + L S+ + PV+ T+ A + +LE G KT +
Sbjct: 5 KGMLGSAVLLAALSLPL----QAAEPVKVGSKIDTEGALLGNIILQVLESH-GVKTVNKV 59
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEG------------------SIK 101
+L PV ++ + +DI+ Y F +
Sbjct: 60 QLGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDPAWKNAKDGYEKVKKLDAEQNKLV 119
Query: 102 LVAENLQGAKYMLAVNDVGFALGIKS 127
+ + +AV G +
Sbjct: 120 WLTPAPANNTWTIAVRKDVAEKGKLT 145
>gi|301025488|ref|ZP_07189035.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli MS 69-1]
gi|300396003|gb|EFJ79541.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli MS 69-1]
Length = 339
Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/245 (11%), Positives = 63/245 (25%), Gaps = 22/245 (8%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRS 70
++++ V A + A + G + K + R+
Sbjct: 28 LLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQ-ADNTFAKESGATVDWRKFDSGASIVRA 86
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD 130
L + + I P E + + G L V
Sbjct: 87 LASGDVQIGNLGSSPLAVAASQQVPIE---VFLLASKLGNSEALVVKKTISKP------- 136
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
++L K + + + +L + + ++ I +
Sbjct: 137 -----EDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNLQPP----AIIAAWQRG 187
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKNIK 249
W P + + L E++ +G ++ VVR D+ +K P + +
Sbjct: 188 DIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPEVVKAFAKSA 247
Query: 250 FSVAL 254
Sbjct: 248 IDAQQ 252
>gi|300900422|ref|ZP_07118592.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli MS 198-1]
gi|300356068|gb|EFJ71938.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli MS 198-1]
Length = 339
Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/245 (11%), Positives = 63/245 (25%), Gaps = 22/245 (8%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRS 70
++++ V A + A + G + K + R+
Sbjct: 28 LLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQ-ADNTFAKESGATVDWRKFDSGASIVRA 86
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD 130
L + + I P E + + G L V
Sbjct: 87 LASGDVQIGNLGSSPLAVAASQQVPIE---VFLLASKLGNSEALVVKKTISKP------- 136
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
++L K + + + +L + + ++ I +
Sbjct: 137 -----EDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNLQPP----AIIAAWQRG 187
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKNIK 249
W P + + L E++ +G ++ VVR D+ +K P + +
Sbjct: 188 DIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPEVVKAFAKSA 247
Query: 250 FSVAL 254
Sbjct: 248 IDAQQ 252
>gi|117622632|ref|YP_851545.1| taurine transporter substrate binding subunit [Escherichia coli
APEC O1]
gi|237707646|ref|ZP_04538127.1| taurine-binding periplasmic protein [Escherichia sp. 3_2_53FAA]
gi|91071004|gb|ABE05885.1| taurine-binding periplasmic protein precursor [Escherichia coli
UTI89]
gi|115511756|gb|ABI99830.1| taurine-binding periplasmic protein precursor [Escherichia coli
APEC O1]
gi|226898856|gb|EEH85115.1| taurine-binding periplasmic protein [Escherichia sp. 3_2_53FAA]
gi|315289833|gb|EFU49223.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli MS 110-3]
gi|315299595|gb|EFU58843.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli MS 16-3]
Length = 339
Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/245 (11%), Positives = 63/245 (25%), Gaps = 22/245 (8%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRS 70
++++ V A + A + G + K + R+
Sbjct: 28 FLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQ-ADNTFAKESGATVDWRKFDSGASIVRA 86
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD 130
L + + I P E + + G L V
Sbjct: 87 LASGDVQIGNLGSSPLAVATSQQVPIE---VFLLASKLGNSEALVVKKTISKP------- 136
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
++L K + + + +L + + ++ I +
Sbjct: 137 -----EDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNLQPP----AIIAAWQRG 187
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKNIK 249
W P + + L E++ +G ++ VVR D+ +K P + +
Sbjct: 188 DIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPEVVKAFAKSA 247
Query: 250 FSVAL 254
Sbjct: 248 IDAQQ 252
>gi|269797019|ref|YP_003316474.1| periplasmic glycine betaine/choline-binding (lipo)protein of an
ABC-type transport system (osmoprotectant binding
protein) [Sanguibacter keddieii DSM 10542]
gi|269099204|gb|ACZ23640.1| periplasmic glycine betaine/choline-binding (lipo)protein of an
ABC-type transport system (osmoprotectant binding
protein) [Sanguibacter keddieii DSM 10542]
Length = 333
Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/223 (9%), Positives = 55/223 (24%), Gaps = 26/223 (11%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP 65
A F+ + V +++ + +L GY + +
Sbjct: 114 AAADFVAANDLGSPEQVGEGRSVIVGAPNFSEGQTLANLYVEVLNAA-GYDAQTQDIGNR 172
Query: 66 VTF-RSLKNKGIDIFMGYWYP---------SLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
+ L++ I + Y + E + + G + LA
Sbjct: 173 ELYLTDLESGAITVVPEYVSTLTEFLNAKVNGENPEPVATTDLDATVEGLTGLGDEVGLA 232
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAK------------IYGIEPGNEGNQRILDMINNNK 163
A ++ + ++ G + G P + + +
Sbjct: 233 FGTPADAQDQNAFAVTTAFSEQYGVTTLTELATTCGDVVLGGPPECP-ERAFCQLGLEDT 291
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSD 206
+ L+ + + + + R V L P +
Sbjct: 292 YGLEVGEFVSLDAGGNLT--KDALRQGNITVGLILSSDPSLAT 332
Score = 42.5 bits (98), Expect = 0.069, Method: Composition-based stats.
Identities = 7/84 (8%), Positives = 27/84 (32%), Gaps = 6/84 (7%)
Query: 207 LNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILN 264
++ ++ + ++ V + + I +L + ++ K +
Sbjct: 47 PGDTFVGLEDDKTLQNPDNIIPAVNAAAAGEDAEIVTVLDTVSAVLDTPALVDLNKAVDV 106
Query: 265 NKQDRQFVGRTMLRTH----PDLL 284
++Q Q + + P+ +
Sbjct: 107 DRQTSQQAAADFVAANDLGSPEQV 130
>gi|156935284|ref|YP_001439200.1| DL-methionine transporter substrate-binding subunit [Cronobacter
sakazakii ATCC BAA-894]
gi|156533538|gb|ABU78364.1| hypothetical protein ESA_03141 [Cronobacter sakazakii ATCC BAA-894]
Length = 273
Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/278 (10%), Positives = 69/278 (24%), Gaps = 14/278 (5%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K A L + P ++ + + + +E G +
Sbjct: 7 FKTFAAVGALLGTLALAGCGQEEKDPNHIKVGVIVGAEQQV-AEVAKKVAKEKYGLDVEL 65
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V +L ID P L++ I + A Y +
Sbjct: 66 VTFNDYVLPNEALSKGDIDANAFQHKPYLDQQIKDRGYKLVSVGNTFVYPIAGYSRKIKS 125
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ + + + G + + ++ +
Sbjct: 126 LDELQPGAQVAVPNDPTNLGRSLLLLQKVGLIKLKDDIGLLPT-VLDITENPKNLKIVEL 184
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
Q+ R ++ A+ + + S +N+ G + V +V +
Sbjct: 185 EAPQLPRSLDDDQIALAVINTTYA--SQINLTPAKDGIFVEDKDSPYVNMIVTREDNKDA 242
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
N+ + +K + NE + N +
Sbjct: 243 ENVKKFVKAYQ--SDEVNEAANKVFNGG-----AVKGW 273
>gi|320167057|gb|EFW43956.1| NPR2 protein [Capsaspora owczarzaki ATCC 30864]
Length = 1406
Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/319 (8%), Positives = 71/319 (22%), Gaps = 75/319 (23%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI-KLLAVPVTFRSLKNKGIDIFMG 81
+ + T M +++L + LGY I + L+ L + +
Sbjct: 75 ARQQTIILDEPQSDAHRLVTTMAAILLRDALGYDVRILRHLSESSALARLASGTTHANLA 134
Query: 82 YWYPSLEKFIAPYLEE-GSIKLVAENLQGAKYMLAVND---------------------- 118
+ ++ ++ V + V+
Sbjct: 135 ISASNTALNYTNFVSVLRTVDDVGSIGFVGRSGWFVSTSAIAANPALHLDYWRFLQTETG 194
Query: 119 ---------------------------VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEG 151
+ + + Y P +
Sbjct: 195 LGLLPAFNSTTASVDSSTDLFLCDTSSYSYCTDGRYTSALCSQDTSFCRDFYHGPPNWD- 253
Query: 152 NQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHY 211
+ ++ N + +L ++ + + + P + WEP + ++
Sbjct: 254 SGVAAQLVANLQLNL---SVVYLDAETLTDLVDQHVTASTPVLLQYWEPSRHVAAGDLTR 310
Query: 212 LPGGEE-----------------ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVAL 254
+ F + + + + P LL+ + AL
Sbjct: 311 VALPSYTPACYNGNTESPPSGTVACDFPAVVLSKALWAQLESRHPEAYTLLRLFQVDDAL 370
Query: 255 ENEMMKLILNNKQDRQFVG 273
N ++ +
Sbjct: 371 INSLLAQLA---ATPDGAA 386
>gi|227884630|ref|ZP_04002435.1| taurine-binding periplasmic protein precursor [Escherichia coli
83972]
gi|300988137|ref|ZP_07178574.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli MS 45-1]
gi|26106765|gb|AAN78950.1|AE016756_133 Taurine-binding periplasmic protein precursor [Escherichia coli
CFT073]
gi|227838716|gb|EEJ49182.1| taurine-binding periplasmic protein precursor [Escherichia coli
83972]
gi|300407551|gb|EFJ91089.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli MS 45-1]
gi|315294165|gb|EFU53516.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli MS 153-1]
gi|324010147|gb|EGB79366.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli MS 57-2]
Length = 339
Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/245 (11%), Positives = 63/245 (25%), Gaps = 22/245 (8%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRS 70
++++ V A + A + G + K + R+
Sbjct: 28 FLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQ-ADNTFAKESGATVDWRKFDSGASIVRA 86
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD 130
L + + I P E + + G L V
Sbjct: 87 LASGDVQIGNLGSSPLAVATSQQVPIE---VFLLASKLGNSEALVVKKTISKP------- 136
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
++L K + + + +L + + ++ I +
Sbjct: 137 -----EDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNLQPP----AIIAAWQRG 187
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKNIK 249
W P + + L E++ +G ++ VVR D+ +K P + +
Sbjct: 188 DIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPEVVKAFAKSA 247
Query: 250 FSVAL 254
Sbjct: 248 IDAQQ 252
>gi|300715422|ref|YP_003740225.1| D-methionine-binding lipoprotein MetQ [Erwinia billingiae Eb661]
gi|299061258|emb|CAX58367.1| D-methionine-binding lipoprotein MetQ [Erwinia billingiae Eb661]
Length = 271
Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/283 (9%), Positives = 72/283 (25%), Gaps = 24/283 (8%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K A L D + P ++ + + + ++ G +
Sbjct: 5 FKTFAAVGALIGTLALVGCDQKAKDPNHIKVGVIVGAEQQV-AEVAKQVAKDKYGLDVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V +L ID+ P L++ I + + A Y +
Sbjct: 64 VTFNDYVLPNEALSKGDIDVNAFQHKPYLDQQIKDRGYKLTPVGNTFVYPIAGYSKKIKS 123
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ + + + G ++ + ++E +
Sbjct: 124 LDELQNGAQVAIPNDPTNLGRSLLLLQKVG------LIKLKEGTGLLPTSLDVVENPKNI 177
Query: 179 SFSQIR-----RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
++ R + A+ + + S +N+ G + V +V +
Sbjct: 178 KLVELEAPQLPRSLDDQQIALAVINTTYA--SQINLTPEKDGIFVEDKDSPYVNMIVARE 235
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
N+ + ++ + + I N +
Sbjct: 236 DNKDAENVKKFVQAYQ--SDEVSAAANKIFNGG-----AVKGW 271
>gi|312114805|ref|YP_004012401.1| aliphatic sulfonates family ABC transporter periplasmic
ligand-binding protein [Rhodomicrobium vannielii ATCC
17100]
gi|311219934|gb|ADP71302.1| aliphatic sulfonates family ABC transporter, periplasmic
ligand-binding protein [Rhodomicrobium vannielii ATCC
17100]
Length = 316
Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/278 (9%), Positives = 63/278 (22%), Gaps = 31/278 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEI---LGYKT 57
+ K F T + VR + + + LE+ LGYK
Sbjct: 5 LRKAFLASAFALTSVFAAGTADAQDKTVRVGFQKYGKLILLKS--KGTLEKKLGDLGYKV 62
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
N + A + + E + V
Sbjct: 63 TWTEFPAGPQLLEALN--VGAIDVTNTGEAPPIFAQAAGAPLLYIAHEPPAERGEAILVP 120
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
K EL K + G+ + ++ + + + +
Sbjct: 121 KDSP----------LKSVAELKGKKVALNKGSNVHYLLVKALEKAGVAYSDITPVFLTP- 169
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDK 237
+ R ++ W+P +++ + + + +
Sbjct: 170 ---ADARAAFEKGAVDAWVIWDPFQAAAEVTLGARQLADGKGIVDNYQ-FYFASKKLAAE 225
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRT 275
P+ + + + + + K D +
Sbjct: 226 HPDAVKAV------IEELRSVDAWV---KADPKAAAAQ 254
>gi|157157826|ref|YP_001461541.1| taurine transporter substrate binding subunit [Escherichia coli
E24377A]
gi|157079856|gb|ABV19564.1| taurine ABC transporter, periplasmic taurine-binding protein
[Escherichia coli E24377A]
Length = 320
Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/245 (11%), Positives = 63/245 (25%), Gaps = 22/245 (8%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRS 70
++++ V A + A + G + K + R+
Sbjct: 9 LLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQ-ADNTFAKESGANVDWRKFDSGASIVRA 67
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD 130
L + + I P E + + G L V
Sbjct: 68 LASGDVQIGNLGSSPLAVAASQQVPIE---VFLLASKLGNSEALVVKKTISKP------- 117
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
++L K + + + +L + + ++ I +
Sbjct: 118 -----EDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNLQPP----AIIAAWQRG 168
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKNIK 249
W P + + L E++ +G ++ VVR D+ +K P + +
Sbjct: 169 DIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPEVVKAFAKSA 228
Query: 250 FSVAL 254
Sbjct: 229 IDAQQ 233
>gi|260853591|ref|YP_003227482.1| taurine transporter subunit TauA [Escherichia coli O26:H11 str.
11368]
gi|257752240|dbj|BAI23742.1| taurine transporter subunit TauA [Escherichia coli O26:H11 str.
11368]
Length = 320
Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/245 (11%), Positives = 63/245 (25%), Gaps = 22/245 (8%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRS 70
++++ V A + A + G + K + R+
Sbjct: 9 LLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQ-ADNTFAKESGATVDWRKFDSGASIVRA 67
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD 130
L + + I P E + + G L V
Sbjct: 68 LASGDVQIGNLGSSPLAVAASQQVPIE---VFLLASKLGNSEALVVKKTISKP------- 117
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
++L K + + + +L + + ++ I +
Sbjct: 118 -----EDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNLQPP----AIIAAWQRG 168
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKNIK 249
W P + + L E++ +G ++ VVR D+ +K P + +
Sbjct: 169 DIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPEVVKAFAKSA 228
Query: 250 FSVAL 254
Sbjct: 229 IDAQQ 233
>gi|300957920|ref|ZP_07170090.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli MS 175-1]
gi|300315384|gb|EFJ65168.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli MS 175-1]
Length = 339
Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/245 (11%), Positives = 63/245 (25%), Gaps = 22/245 (8%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRS 70
++++ V A + A + G + K + R+
Sbjct: 28 LLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQ-ADNTFAKESGATVDWRKFDSGASIVRA 86
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD 130
L + + I P E + + G L V
Sbjct: 87 LASGDVQIGNLGSSPLAVAASQQVSIE---VFLLASKLGNSEALVVKKTISKP------- 136
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
++L K + + + +L + + ++ I +
Sbjct: 137 -----EDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNLQPP----AIIAAWQRG 187
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKNIK 249
W P + + L E++ +G ++ VVR D+ +K P + +
Sbjct: 188 DIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPEVVKAFAKSA 247
Query: 250 FSVAL 254
Sbjct: 248 IDAQQ 252
>gi|213022995|ref|ZP_03337442.1| putative periplasmic protein [Salmonella enterica subsp. enterica
serovar Typhi str. 404ty]
Length = 178
Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/147 (16%), Positives = 39/147 (26%), Gaps = 24/147 (16%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--N 58
+ K+ L L + A PV T+ A M +LE G KT
Sbjct: 3 ISKLWVSSLALLATVSLPLQAAS---PVTVGSKIDTEGALLGNMILQVLESH-GVKTVNK 58
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEG------------------SI 100
I+L PV ++ +DI+ Y F +
Sbjct: 59 IQLGTTPVVRGAITAGELDIYPEYTGNGAFFFKDENDPAWKNAKQGFEKVKKLDAEQNKL 118
Query: 101 KLVAENLQGAKYMLAVNDVGFALGIKS 127
+ + +A+ S
Sbjct: 119 VWLTPAPANNTWTIAIRQDIAEKNKLS 145
>gi|300903375|ref|ZP_07121303.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli MS 84-1]
gi|301301508|ref|ZP_07207643.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli MS 124-1]
gi|300404670|gb|EFJ88208.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli MS 84-1]
gi|300843005|gb|EFK70765.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli MS 124-1]
gi|315256183|gb|EFU36151.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli MS 85-1]
Length = 339
Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/245 (11%), Positives = 63/245 (25%), Gaps = 22/245 (8%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRS 70
++++ V A + A + G + K + R+
Sbjct: 28 LLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQ-ADNTFAKESGASVDWRKFDSGASIVRA 86
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD 130
L + + I P E + + G L V
Sbjct: 87 LASGDVQIGNLGSSPLAVAASQQVPIE---VFLLASKLGNSEALVVKKTISKP------- 136
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
++L K + + + +L + + ++ I +
Sbjct: 137 -----EDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNLQPP----AIIAAWQRG 187
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKNIK 249
W P + + L E++ +G ++ VVR D+ +K P + +
Sbjct: 188 DIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPEVVKAFAKSA 247
Query: 250 FSVAL 254
Sbjct: 248 IDAQQ 252
>gi|89107236|ref|AP_001016.1| taurine transporter subunit [Escherichia coli str. K-12 substr.
W3110]
gi|90111122|ref|NP_414899.2| taurine transporter subunit [Escherichia coli str. K-12 substr.
MG1655]
gi|168749815|ref|ZP_02774837.1| taurine ABC transporter, periplasmic taurine-binding protein
[Escherichia coli O157:H7 str. EC4113]
gi|168756894|ref|ZP_02781901.1| taurine ABC transporter, periplasmic taurine-binding protein
[Escherichia coli O157:H7 str. EC4401]
gi|168768303|ref|ZP_02793310.1| taurine ABC transporter, periplasmic taurine-binding protein
[Escherichia coli O157:H7 str. EC4486]
gi|168776342|ref|ZP_02801349.1| taurine ABC transporter, periplasmic taurine-binding protein
[Escherichia coli O157:H7 str. EC4196]
gi|168783218|ref|ZP_02808225.1| taurine ABC transporter, periplasmic taurine-binding protein
[Escherichia coli O157:H7 str. EC4076]
gi|168786198|ref|ZP_02811205.1| taurine ABC transporter, periplasmic taurine-binding protein
[Escherichia coli O157:H7 str. EC869]
gi|168800235|ref|ZP_02825242.1| taurine ABC transporter, periplasmic taurine-binding protein
[Escherichia coli O157:H7 str. EC508]
gi|170079954|ref|YP_001729274.1| taurine ABC transporter periplasmic substrate-binding protein
[Escherichia coli str. K-12 substr. DH10B]
gi|195938572|ref|ZP_03083954.1| taurine transporter substrate binding subunit [Escherichia coli
O157:H7 str. EC4024]
gi|208806639|ref|ZP_03248976.1| taurine ABC transporter, periplasmic taurine-binding protein
[Escherichia coli O157:H7 str. EC4206]
gi|208815523|ref|ZP_03256702.1| taurine ABC transporter, periplasmic taurine-binding protein
[Escherichia coli O157:H7 str. EC4045]
gi|208823244|ref|ZP_03263562.1| taurine ABC transporter, periplasmic taurine-binding protein
[Escherichia coli O157:H7 str. EC4042]
gi|209397536|ref|YP_002269006.1| taurine ABC transporter, periplasmic taurine-binding protein
[Escherichia coli O157:H7 str. EC4115]
gi|238899658|ref|YP_002925454.1| taurine transporter subunit [Escherichia coli BW2952]
gi|254791545|ref|YP_003076382.1| taurine transporter substrate binding subunit [Escherichia coli
O157:H7 str. TW14359]
gi|256024014|ref|ZP_05437879.1| taurine transporter substrate binding subunit [Escherichia sp.
4_1_40B]
gi|261223844|ref|ZP_05938125.1| taurine transporter subunit, periplasmic-binding component of ABC
superfamily protein [Escherichia coli O157:H7 str.
FRIK2000]
gi|261256052|ref|ZP_05948585.1| taurine transporter subunit, periplasmic-binding component of ABC
superfamily protein [Escherichia coli O157:H7 str.
FRIK966]
gi|291281272|ref|YP_003498090.1| Taurine transport system periplasmic protein [Escherichia coli
O55:H7 str. CB9615]
gi|293413619|ref|ZP_06656268.1| taurine ABC transporter [Escherichia coli B185]
gi|307137009|ref|ZP_07496365.1| taurine transporter substrate binding subunit [Escherichia coli
H736]
gi|331651294|ref|ZP_08352319.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli M718]
gi|2500699|sp|Q47537|TAUA_ECOLI RecName: Full=Taurine-binding periplasmic protein; AltName:
Full=Sulfate starvation-induced protein 1; Short=SSI1;
Flags: Precursor
gi|1384058|dbj|BAA12838.1| substrate-binding protein [Escherichia coli]
gi|85674506|dbj|BAE76146.1| taurine transporter subunit [Escherichia coli str. K12 substr.
W3110]
gi|87081727|gb|AAC73468.2| taurine transporter subunit [Escherichia coli str. K-12 substr.
MG1655]
gi|169887789|gb|ACB01496.1| taurine transporter subunit; periplasmic-binding component of ABC
superfamily [Escherichia coli str. K-12 substr. DH10B]
gi|187768331|gb|EDU32175.1| taurine ABC transporter, periplasmic taurine-binding protein
[Escherichia coli O157:H7 str. EC4196]
gi|188015848|gb|EDU53970.1| taurine ABC transporter, periplasmic taurine-binding protein
[Escherichia coli O157:H7 str. EC4113]
gi|188999378|gb|EDU68364.1| taurine ABC transporter, periplasmic taurine-binding protein
[Escherichia coli O157:H7 str. EC4076]
gi|189355971|gb|EDU74390.1| taurine ABC transporter, periplasmic taurine-binding protein
[Escherichia coli O157:H7 str. EC4401]
gi|189362541|gb|EDU80960.1| taurine ABC transporter, periplasmic taurine-binding protein
[Escherichia coli O157:H7 str. EC4486]
gi|189373500|gb|EDU91916.1| taurine ABC transporter, periplasmic taurine-binding protein
[Escherichia coli O157:H7 str. EC869]
gi|189377418|gb|EDU95834.1| taurine ABC transporter, periplasmic taurine-binding protein
[Escherichia coli O157:H7 str. EC508]
gi|208726440|gb|EDZ76041.1| taurine ABC transporter, periplasmic taurine-binding protein
[Escherichia coli O157:H7 str. EC4206]
gi|208732171|gb|EDZ80859.1| taurine ABC transporter, periplasmic taurine-binding protein
[Escherichia coli O157:H7 str. EC4045]
gi|208737437|gb|EDZ85121.1| taurine ABC transporter, periplasmic taurine-binding protein
[Escherichia coli O157:H7 str. EC4042]
gi|209158936|gb|ACI36369.1| taurine ABC transporter, periplasmic taurine-binding protein
[Escherichia coli O157:H7 str. EC4115]
gi|209744514|gb|ACI70564.1| taurine transport system periplasmic protein [Escherichia coli]
gi|209744518|gb|ACI70566.1| taurine transport system periplasmic protein [Escherichia coli]
gi|209744520|gb|ACI70567.1| taurine transport system periplasmic protein [Escherichia coli]
gi|209744522|gb|ACI70568.1| taurine transport system periplasmic protein [Escherichia coli]
gi|238863624|gb|ACR65622.1| taurine transporter subunit [Escherichia coli BW2952]
gi|254590945|gb|ACT70306.1| taurine transporter subunit, periplasmic-binding component of ABC
superfamily [Escherichia coli O157:H7 str. TW14359]
gi|260450445|gb|ACX40867.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli DH1]
gi|290761145|gb|ADD55106.1| Taurine transport system periplasmic protein [Escherichia coli
O55:H7 str. CB9615]
gi|291433677|gb|EFF06650.1| taurine ABC transporter [Escherichia coli B185]
gi|315135049|dbj|BAJ42208.1| taurine transport system periplasmic protein [Escherichia coli DH1]
gi|315616700|gb|EFU97317.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli 3431]
gi|320638356|gb|EFX08070.1| taurine transporter substrate binding subunit [Escherichia coli
O157:H7 str. G5101]
gi|320643737|gb|EFX12860.1| taurine transporter substrate binding subunit [Escherichia coli
O157:H- str. 493-89]
gi|320649087|gb|EFX17665.1| taurine transporter substrate binding subunit [Escherichia coli
O157:H- str. H 2687]
gi|320655980|gb|EFX23896.1| taurine transporter substrate binding subunit [Escherichia coli
O55:H7 str. 3256-97 TW 07815]
gi|320662537|gb|EFX29926.1| taurine transporter substrate binding subunit [Escherichia coli
O55:H7 str. USDA 5905]
gi|320665107|gb|EFX32200.1| taurine transporter substrate binding subunit [Escherichia coli
O157:H7 str. LSU-61]
gi|326346102|gb|EGD69841.1| Taurine-binding periplasmic protein TauA [Escherichia coli O157:H7
str. 1125]
gi|331051035|gb|EGI23087.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli M718]
Length = 320
Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/245 (11%), Positives = 63/245 (25%), Gaps = 22/245 (8%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRS 70
++++ V A + A + G + K + R+
Sbjct: 9 LLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQ-ADNTFAKESGATVDWRKFDSGASIVRA 67
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD 130
L + + I P E + + G L V
Sbjct: 68 LASGDVQIGNLGSSPLAVAASQQVPIE---VFLLASKLGNSEALVVKKTISKP------- 117
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
++L K + + + +L + + ++ I +
Sbjct: 118 -----EDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNLQPP----AIIAAWQRG 168
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKNIK 249
W P + + L E++ +G ++ VVR D+ +K P + +
Sbjct: 169 DIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPEVVKAFAKSA 228
Query: 250 FSVAL 254
Sbjct: 229 IDAQQ 233
>gi|157159881|ref|YP_001457199.1| taurine transporter substrate binding subunit [Escherichia coli HS]
gi|191166739|ref|ZP_03028566.1| taurine ABC transporter, periplasmic taurine-binding protein
[Escherichia coli B7A]
gi|193068717|ref|ZP_03049678.1| taurine ABC transporter, periplasmic taurine-binding protein
[Escherichia coli E110019]
gi|209917578|ref|YP_002291662.1| taurine transporter substrate binding subunit [Escherichia coli
SE11]
gi|218552928|ref|YP_002385841.1| taurine transporter substrate binding subunit [Escherichia coli
IAI1]
gi|218693827|ref|YP_002401494.1| taurine transporter substrate binding subunit [Escherichia coli
55989]
gi|256020338|ref|ZP_05434203.1| taurine transporter substrate binding subunit [Shigella sp. D9]
gi|307312255|ref|ZP_07591891.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli W]
gi|331666713|ref|ZP_08367587.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli TA271]
gi|157065561|gb|ABV04816.1| taurine ABC transporter, periplasmic taurine-binding protein
[Escherichia coli HS]
gi|190903250|gb|EDV62972.1| taurine ABC transporter, periplasmic taurine-binding protein
[Escherichia coli B7A]
gi|192958080|gb|EDV88522.1| taurine ABC transporter, periplasmic taurine-binding protein
[Escherichia coli E110019]
gi|209910837|dbj|BAG75911.1| taurine ABC transporter substrate binding component [Escherichia
coli SE11]
gi|218350559|emb|CAU96247.1| taurine transporter subunit ; periplasmic-binding component of ABC
superfamily [Escherichia coli 55989]
gi|218359696|emb|CAQ97237.1| taurine transporter subunit ; periplasmic-binding component of ABC
superfamily [Escherichia coli IAI1]
gi|306907757|gb|EFN38259.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli W]
gi|315059648|gb|ADT73975.1| taurine transporter subunit [Escherichia coli W]
gi|323379788|gb|ADX52056.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli KO11]
gi|324116851|gb|EGC10764.1| taurine ABC transporter [Escherichia coli E1167]
gi|331065937|gb|EGI37821.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli TA271]
Length = 320
Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/245 (11%), Positives = 63/245 (25%), Gaps = 22/245 (8%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRS 70
++++ V A + A + G + K + R+
Sbjct: 9 LLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQ-ADNTFAKESGATVDWRKFDSGASIVRA 67
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD 130
L + + I P E + + G L V
Sbjct: 68 LASGDVQIGNLGSSPLAVAASQQVPIE---VFLLASKLGNSEALVVKKTISKP------- 117
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
++L K + + + +L + + ++ I +
Sbjct: 118 -----EDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNLQPP----AIIAAWQRG 168
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKNIK 249
W P + + L E++ +G ++ VVR D+ +K P + +
Sbjct: 169 DIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPEVVKAFAKSA 228
Query: 250 FSVAL 254
Sbjct: 229 IDAQQ 233
>gi|320197198|gb|EFW71815.1| Taurine-binding periplasmic protein TauA [Escherichia coli
WV_060327]
Length = 320
Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/245 (11%), Positives = 63/245 (25%), Gaps = 22/245 (8%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRS 70
++++ V A + A + G + K + R+
Sbjct: 9 LLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQ-ADNTFAKESGATVDWRKFDSGASIVRA 67
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD 130
L + + I P E + + G L V
Sbjct: 68 LASGDVQIGNLGSSPLAVATSQQVPIE---VFLLASKLGNSEALVVKKTISKP------- 117
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
++L K + + + +L + + ++ I +
Sbjct: 118 -----EDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNLQPP----AIIAAWQRG 168
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKNIK 249
W P + + L E++ +G ++ VVR D+ +K P + +
Sbjct: 169 DIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPEVVKAFAKSA 228
Query: 250 FSVAL 254
Sbjct: 229 IDAQQ 233
>gi|293408512|ref|ZP_06652351.1| taurine ABC transporter [Escherichia coli B354]
gi|291471690|gb|EFF14173.1| taurine ABC transporter [Escherichia coli B354]
Length = 320
Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/245 (11%), Positives = 63/245 (25%), Gaps = 22/245 (8%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRS 70
++++ V A + A + G + K + R+
Sbjct: 9 LLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQ-ADNTFAKESGATVDWRKFDSGASIVRA 67
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD 130
L + + I P E + + G L V
Sbjct: 68 LASGDVQIGNLGSSPLAVAANQQVPIE---VFLLASKLGNSEALVVKKTISKP------- 117
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
++L K + + + +L + + ++ I +
Sbjct: 118 -----EDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNLQPP----AIIAAWQRG 168
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKNIK 249
W P + + L E++ +G ++ VVR D+ +K P + +
Sbjct: 169 DIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPEVVKAFAKSA 228
Query: 250 FSVAL 254
Sbjct: 229 IDAQQ 233
>gi|218698729|ref|YP_002406358.1| taurine transporter substrate binding subunit [Escherichia coli
IAI39]
gi|218368715|emb|CAR16456.1| taurine transporter subunit ; periplasmic-binding component of ABC
superfamily [Escherichia coli IAI39]
Length = 320
Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/245 (11%), Positives = 63/245 (25%), Gaps = 22/245 (8%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRS 70
++++ V A + A + G + K + R+
Sbjct: 9 LLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQ-ADNTFAKESGATVDWRKFDSGASIVRA 67
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD 130
L + + I P E + + G L V
Sbjct: 68 LASGDVQIGNLGSSPLAVAASQQVPIE---VFLLASKLGNSEALVVKKTISKP------- 117
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
++L K + + + +L + + ++ I +
Sbjct: 118 -----EDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNLQPP----AIIAAWQRG 168
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKNIK 249
W P + + L E++ +G ++ VVR D+ +K P + +
Sbjct: 169 DIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPEVVKAFAKSA 228
Query: 250 FSVAL 254
Sbjct: 229 IDAQQ 233
>gi|191173494|ref|ZP_03035021.1| taurine ABC transporter, periplasmic taurine-binding protein
[Escherichia coli F11]
gi|190906203|gb|EDV65815.1| taurine ABC transporter, periplasmic taurine-binding protein
[Escherichia coli F11]
Length = 320
Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/245 (11%), Positives = 63/245 (25%), Gaps = 22/245 (8%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRS 70
++++ V A + A + G + K + R+
Sbjct: 9 LLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQ-ADNTFAKESGATVDWRKFDSGASIVRA 67
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD 130
L + + I P E + + G L V
Sbjct: 68 LASGDVQIGNLGSSPLAVATSQQVPIE---VFLLASKLGNSEALVVKKTISKP------- 117
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
++L K + + + +L + + ++ I +
Sbjct: 118 -----EDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNLQPP----AIIAAWQRG 168
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKNIK 249
W P + + L E++ +G ++ VVR D+ +K P + +
Sbjct: 169 DIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPEVVKAFAKSA 228
Query: 250 FSVAL 254
Sbjct: 229 IDAQQ 233
>gi|170021258|ref|YP_001726212.1| taurine transporter substrate binding subunit [Escherichia coli
ATCC 8739]
gi|188494831|ref|ZP_03002101.1| taurine ABC transporter, periplasmic taurine-binding protein
[Escherichia coli 53638]
gi|194438849|ref|ZP_03070934.1| taurine ABC transporter, periplasmic taurine-binding protein
[Escherichia coli 101-1]
gi|218703649|ref|YP_002411168.1| taurine transporter substrate binding subunit [Escherichia coli
UMN026]
gi|253774650|ref|YP_003037481.1| taurine transporter substrate binding subunit [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254160434|ref|YP_003043542.1| taurine transporter substrate binding subunit [Escherichia coli B
str. REL606]
gi|260866532|ref|YP_003232934.1| taurine transporter subunit TauA [Escherichia coli O111:H- str.
11128]
gi|293403485|ref|ZP_06647576.1| taurine-binding periplasmic protein tauA [Escherichia coli
FVEC1412]
gi|297519238|ref|ZP_06937624.1| taurine transporter substrate binding subunit [Escherichia coli
OP50]
gi|298379096|ref|ZP_06988977.1| taurine-binding periplasmic protein [Escherichia coli FVEC1302]
gi|312970455|ref|ZP_07784636.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli 1827-70]
gi|331671923|ref|ZP_08372719.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli TA280]
gi|169756186|gb|ACA78885.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli ATCC 8739]
gi|188490030|gb|EDU65133.1| taurine ABC transporter, periplasmic taurine-binding protein
[Escherichia coli 53638]
gi|194422143|gb|EDX38145.1| taurine ABC transporter, periplasmic taurine-binding protein
[Escherichia coli 101-1]
gi|218430746|emb|CAR11620.1| taurine transporter subunit ; periplasmic-binding component of ABC
superfamily [Escherichia coli UMN026]
gi|242376147|emb|CAQ30836.1| tauA, subunit of taurine ABC transporter [Escherichia coli
BL21(DE3)]
gi|253325694|gb|ACT30296.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli 'BL21-Gold(DE3)pLysS AG']
gi|253972335|gb|ACT38006.1| taurine transporter subunit [Escherichia coli B str. REL606]
gi|253976544|gb|ACT42214.1| taurine transporter subunit [Escherichia coli BL21(DE3)]
gi|257762888|dbj|BAI34383.1| taurine transporter subunit TauA [Escherichia coli O111:H- str.
11128]
gi|284920173|emb|CBG33232.1| taurine ABC transporter, substrate-binding protein (sulfate
starvation induced protein) [Escherichia coli 042]
gi|291429338|gb|EFF02358.1| taurine-binding periplasmic protein tauA [Escherichia coli
FVEC1412]
gi|298280209|gb|EFI21713.1| taurine-binding periplasmic protein [Escherichia coli FVEC1302]
gi|309700628|emb|CBI99924.1| taurine ABC transporter, substrate-binding protein (sulfate
starvation induced protein) [Escherichia coli ETEC
H10407]
gi|310337104|gb|EFQ02242.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli 1827-70]
gi|320201608|gb|EFW76184.1| Taurine-binding periplasmic protein TauA [Escherichia coli EC4100B]
gi|323152105|gb|EFZ38399.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli EPECa14]
gi|323171145|gb|EFZ56794.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli LT-68]
gi|323938552|gb|EGB34801.1| taurine ABC transporter [Escherichia coli E1520]
gi|323963353|gb|EGB58915.1| taurine ABC transporter [Escherichia coli H489]
gi|323972216|gb|EGB67426.1| taurine ABC transporter [Escherichia coli TA007]
gi|331070912|gb|EGI42271.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli TA280]
Length = 320
Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/245 (11%), Positives = 63/245 (25%), Gaps = 22/245 (8%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRS 70
++++ V A + A + G + K + R+
Sbjct: 9 LLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQ-ADNTFAKESGATVDWRKFDSGASIVRA 67
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD 130
L + + I P E + + G L V
Sbjct: 68 LASGDVQIGNLGSSPLAVAASQQVPIE---VFLLASKLGNSEALVVKKTISKP------- 117
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
++L K + + + +L + + ++ I +
Sbjct: 118 -----EDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNLQPP----AIIAAWQRG 168
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKNIK 249
W P + + L E++ +G ++ VVR D+ +K P + +
Sbjct: 169 DIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPEVVKAFAKSA 228
Query: 250 FSVAL 254
Sbjct: 229 IDAQQ 233
>gi|330948086|gb|EGH48346.1| hypothetical protein PSYPI_41019 [Pseudomonas syringae pv. pisi
str. 1704B]
Length = 55
Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 18 YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKN 73
A DA SC VR WTD+ AT+AMT V+L + LGYKT + + F +++
Sbjct: 1 MAADAASCQNVRMGVVNWTDVIATSAMTQVLL-DGLGYKTKQTSASQQIIFAGIRD 55
>gi|215485453|ref|YP_002327884.1| taurine transporter substrate binding subunit [Escherichia coli
O127:H6 str. E2348/69]
gi|312964622|ref|ZP_07778873.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli 2362-75]
gi|215263525|emb|CAS07853.1| taurine transporter subunit TauA [Escherichia coli O127:H6 str.
E2348/69]
gi|312290643|gb|EFR18521.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli 2362-75]
Length = 320
Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/245 (11%), Positives = 63/245 (25%), Gaps = 22/245 (8%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRS 70
++++ V A + A + G + K + R+
Sbjct: 9 LLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQ-ADNTFAKESGATVDWRKFDSGASIVRA 67
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD 130
L + + I P E + + G L V
Sbjct: 68 LASGDVQIGNLGSSPLAVATSQQVPIE---VFLLASKLGNSEALVVKKTISKP------- 117
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
++L K + + + +L + + ++ I +
Sbjct: 118 -----EDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNLQPP----AIIAAWQRG 168
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKNIK 249
W P + + L E++ +G ++ VVR D+ +K P + +
Sbjct: 169 DIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPEVVKAFAKSA 228
Query: 250 FSVAL 254
Sbjct: 229 IDAQQ 233
>gi|170684058|ref|YP_001742497.1| taurine transporter substrate binding subunit [Escherichia coli
SMS-3-5]
gi|170521776|gb|ACB19954.1| taurine ABC transporter, periplasmic taurine-binding protein
[Escherichia coli SMS-3-5]
Length = 320
Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/245 (11%), Positives = 63/245 (25%), Gaps = 22/245 (8%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRS 70
++++ V A + A + G + K + R+
Sbjct: 9 LLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQ-ADNTFAKESGATVDWRKFDSGASIVRA 67
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD 130
L + + I P E + + G L V
Sbjct: 68 LASGDVQIGNLGSSPLAVATSQQVPIE---VFLLASKLGNSEALVVKKTISKP------- 117
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
++L K + + + +L + + ++ I +
Sbjct: 118 -----EDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNLQPP----AIIAAWQRG 168
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKNIK 249
W P + + L E++ +G ++ VVR D+ +K P + +
Sbjct: 169 DIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPEVVKAFAKSA 228
Query: 250 FSVAL 254
Sbjct: 229 IDAQQ 233
>gi|259910019|ref|YP_002650375.1| Taurine ABC transport system periplasmic protein [Erwinia
pyrifoliae Ep1/96]
gi|224965641|emb|CAX57173.1| Taurine ABC transport system periplasmic protein [Erwinia
pyrifoliae Ep1/96]
gi|283480115|emb|CAY76031.1| Taurine-binding periplasmic protein precursor [Erwinia pyrifoliae
DSM 12163]
Length = 325
Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/242 (12%), Positives = 68/242 (28%), Gaps = 22/242 (9%)
Query: 8 CLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPV 66
+ + ++S V A + A +E G K + K +
Sbjct: 6 AVSILAAALSLTAPGAQAVNVTIAYQTSAEPAKVAQADGTFAKES-GAKVDWRKFDSGSG 64
Query: 67 TFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIK 126
R+L + + I P E + + G+ L V
Sbjct: 65 VVRALASGDVQIGNIGSSPLAVAASQQVPIE---VFLLASQLGSSEALVVKKEI------ 115
Query: 127 SYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRD 186
+ ++L K + + + +L + + + ++I + I
Sbjct: 116 ------NHPQDLVGKRIAVPFISTTHYSLLAALKHWGIKPEQVQIINLQP----AAITAA 165
Query: 187 QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLL 245
+ W P + L ++ +G ++ VVR D+ +K P +
Sbjct: 166 WQRGDIDGAYVWAPSVNQLEKQGKVLTDSSRVAKWGAPTLDVWVVRKDFAEKHPEVVTAF 225
Query: 246 KN 247
Sbjct: 226 AR 227
>gi|331661739|ref|ZP_08362662.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli TA143]
gi|331060161|gb|EGI32125.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli TA143]
Length = 320
Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/245 (11%), Positives = 63/245 (25%), Gaps = 22/245 (8%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRS 70
++++ V A + A + G + K + R+
Sbjct: 9 LLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQ-ADNTFAKESGATVDWRKFDSGASIVRA 67
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD 130
L + + I P E + + G L V
Sbjct: 68 LASGDVQIGNLGSSPLAVAASQQVPIE---VFLLASKLGNSEALVVKKTISKP------- 117
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
++L K + + + +L + + ++ I +
Sbjct: 118 -----EDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNLQPP----AIIAAWQRG 168
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKNIK 249
W P + + L E++ +G ++ VVR D+ +K P + +
Sbjct: 169 DIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPEVVKAFAKSA 228
Query: 250 FSVAL 254
Sbjct: 229 IDAQQ 233
>gi|73854412|gb|AAZ87119.1| taurine transport system periplasmic protein [Shigella sonnei
Ss046]
Length = 339
Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/245 (11%), Positives = 63/245 (25%), Gaps = 22/245 (8%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRS 70
++++ V A + A + G + K + R+
Sbjct: 28 LLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQ-ADNTFAKESGASVDWRKFDSGASIVRA 86
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD 130
L + + I P E + + G L V
Sbjct: 87 LASGDVQIGNLGSSPLAVAASQQVPIE---VFLLASKLGNSEALVVKKTISKP------- 136
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
++L K + + + +L + + ++ I +
Sbjct: 137 -----EDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNLQPP----AIIAAWQRG 187
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKNIK 249
W P + + L E++ +G ++ VVR D+ +K P + +
Sbjct: 188 DIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPEVVKAFAKSA 247
Query: 250 FSVAL 254
Sbjct: 248 IDAQQ 252
>gi|323965315|gb|EGB60773.1| taurine ABC transporter [Escherichia coli M863]
gi|327254681|gb|EGE66297.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli STEC_7v]
Length = 320
Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/245 (11%), Positives = 63/245 (25%), Gaps = 22/245 (8%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRS 70
++++ V A + A + G + K + R+
Sbjct: 9 LLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQ-ADNTFAKESGATVDWRKFDSGASIVRA 67
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD 130
L + + I P E + + G L V
Sbjct: 68 LASGDVQIGNLGSSPLAVAASQQVPIE---VFLLASKLGNSEALVVKKTISKP------- 117
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
++L K + + + +L + + ++ I +
Sbjct: 118 -----EDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNLQPP----AIIAAWQRG 168
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKNIK 249
W P + + L E++ +G ++ VVR D+ +K P + +
Sbjct: 169 DIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPEVVKAFAKSA 228
Query: 250 FSVAL 254
Sbjct: 229 IDAQQ 233
>gi|323191475|gb|EFZ76737.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli RN587/1]
Length = 320
Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/245 (11%), Positives = 63/245 (25%), Gaps = 22/245 (8%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRS 70
++++ V A + A + G + K + R+
Sbjct: 9 LLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQ-ADNTFAKESGATVDWRKFDSGASIVRA 67
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD 130
L + + I P E + + G L V
Sbjct: 68 LASGDVQIGNLGSSPLAVAASQQVPIE---VFLLASKLGNSEALVVKKTISKP------- 117
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
++L K + + + +L + + ++ I +
Sbjct: 118 -----EDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNLQPP----AIIAAWQRG 168
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKNIK 249
W P + + L E++ +G ++ VVR D+ +K P + +
Sbjct: 169 DIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPEVVKAFAKSA 228
Query: 250 FSVAL 254
Sbjct: 229 IDAQQ 233
>gi|162138486|ref|YP_539416.2| taurine transporter substrate binding subunit [Escherichia coli
UTI89]
gi|218557278|ref|YP_002390191.1| taurine transporter substrate binding subunit [Escherichia coli
S88]
gi|218364047|emb|CAR01712.1| taurine transporter subunit ; periplasmic-binding component of ABC
superfamily [Escherichia coli S88]
gi|294494172|gb|ADE92928.1| taurine ABC transporter, periplasmic taurine-binding protein
[Escherichia coli IHE3034]
gi|307628164|gb|ADN72468.1| taurine transporter substrate binding subunit [Escherichia coli
UM146]
gi|323953020|gb|EGB48888.1| taurine ABC transporter [Escherichia coli H252]
gi|323958559|gb|EGB54262.1| taurine ABC transporter [Escherichia coli H263]
Length = 320
Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/245 (11%), Positives = 63/245 (25%), Gaps = 22/245 (8%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRS 70
++++ V A + A + G + K + R+
Sbjct: 9 FLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQ-ADNTFAKESGATVDWRKFDSGASIVRA 67
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD 130
L + + I P E + + G L V
Sbjct: 68 LASGDVQIGNLGSSPLAVATSQQVPIE---VFLLASKLGNSEALVVKKTISKP------- 117
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
++L K + + + +L + + ++ I +
Sbjct: 118 -----EDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNLQPP----AIIAAWQRG 168
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKNIK 249
W P + + L E++ +G ++ VVR D+ +K P + +
Sbjct: 169 DIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPEVVKAFAKSA 228
Query: 250 FSVAL 254
Sbjct: 229 IDAQQ 233
>gi|82775854|ref|YP_402201.1| taurine transporter substrate binding subunit [Shigella dysenteriae
Sd197]
gi|309785990|ref|ZP_07680619.1| taurine ABC transporter, periplasmic binding protein [Shigella
dysenteriae 1617]
gi|81240002|gb|ABB60712.1| taurine transport system periplasmic protein [Shigella dysenteriae
Sd197]
gi|308926101|gb|EFP71579.1| taurine ABC transporter, periplasmic binding protein [Shigella
dysenteriae 1617]
Length = 320
Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/245 (11%), Positives = 63/245 (25%), Gaps = 22/245 (8%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRS 70
++++ V A + A + G + K + R+
Sbjct: 9 LLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQ-ADNTFAKESGANVDWRKFDSGASIVRA 67
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD 130
L + + I P E + + G L V
Sbjct: 68 LASGDVQIGNLGSSPLAVAASQQVPIE---VFLLASKLGNSEALVVKKTISKP------- 117
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
++L K + + + +L + + ++ I +
Sbjct: 118 -----EDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNLQPP----AIIAAWQQG 168
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKNIK 249
W P + + L E++ +G ++ VVR D+ +K P + +
Sbjct: 169 DIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPEVVKAFAKSA 228
Query: 250 FSVAL 254
Sbjct: 229 IDAQQ 233
>gi|308448493|ref|XP_003087663.1| hypothetical protein CRE_06263 [Caenorhabditis remanei]
gi|308253683|gb|EFO97635.1| hypothetical protein CRE_06263 [Caenorhabditis remanei]
Length = 329
Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/305 (11%), Positives = 81/305 (26%), Gaps = 44/305 (14%)
Query: 1 MY--KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTA---MTSVILEEILGY 55
M +++ +C ++ +S S +A P+ + A + ++ E L +
Sbjct: 1 MKFQQLILLCSAISLYSYSGLANA---RPIVIGYQTNIEPAKVAQADGVYDKVIGEKLDW 57
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
+ +L + +DI + P E + A +
Sbjct: 58 ---RLFNSGAEVLTALASGSVDIALIGSSPLGAAVANNLPIEVFLISTDLKSAEALVVRN 114
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
+ + + + + + G + ++N
Sbjct: 115 GSGINSPQDLIGKKVATPFASTSHYSLLGALQHWNIKTNQIRLLNLKP------------ 162
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEAS-VYTVVRSDY 234
++I R W P N + ++ +G + VVR D+
Sbjct: 163 -----AEINAAWRRGDIDAAFVWSPALANIKKTGKVMTDAGQVGQWGSPTFEVWVVRKDF 217
Query: 235 LDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTF 294
K P + + + N+ + ++ + +T
Sbjct: 218 AQKHPEVLTKFSTVT--------LNYYQSYNQNK-----SRW-TANSAEVQK-IAKITGV 262
Query: 295 DGQDP 299
D QD
Sbjct: 263 DAQDV 267
>gi|289810588|ref|ZP_06541217.1| putative periplasmic protein [Salmonella enterica subsp. enterica
serovar Typhi str. AG3]
Length = 67
Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 22/70 (31%), Gaps = 7/70 (10%)
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+ VVR L P I+ L+ + ++ I D + V LR
Sbjct: 3 PIYAPAPVVRESVLQAYPQIADWLQPVFASLDEKTLQQLNARIAVEGLDAKKVAADYLRQ 62
Query: 280 HPDLLKNWLI 289
K W+
Sbjct: 63 -----KGWVK 67
>gi|161486304|ref|NP_752406.2| taurine transporter substrate binding subunit [Escherichia coli
CFT073]
gi|218688232|ref|YP_002396444.1| taurine transporter substrate binding subunit [Escherichia coli
ED1a]
gi|331656419|ref|ZP_08357381.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli TA206]
gi|218425796|emb|CAR06602.1| taurine transporter subunit ; periplasmic-binding component of ABC
superfamily [Escherichia coli ED1a]
gi|222032165|emb|CAP74904.1| Taurine-binding periplasmic protein [Escherichia coli LF82]
gi|307552273|gb|ADN45048.1| taurine-binding periplasmic protein precursor [Escherichia coli ABU
83972]
gi|312944946|gb|ADR25773.1| taurine transporter substrate binding subunit [Escherichia coli
O83:H1 str. NRG 857C]
gi|331054667|gb|EGI26676.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli TA206]
Length = 320
Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/245 (11%), Positives = 63/245 (25%), Gaps = 22/245 (8%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRS 70
++++ V A + A + G + K + R+
Sbjct: 9 FLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQ-ADNTFAKESGATVDWRKFDSGASIVRA 67
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD 130
L + + I P E + + G L V
Sbjct: 68 LASGDVQIGNLGSSPLAVATSQQVPIE---VFLLASKLGNSEALVVKKTISKP------- 117
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
++L K + + + +L + + ++ I +
Sbjct: 118 -----EDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNLQPP----AIIAAWQRG 168
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKNIK 249
W P + + L E++ +G ++ VVR D+ +K P + +
Sbjct: 169 DIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPEVVKAFAKSA 228
Query: 250 FSVAL 254
Sbjct: 229 IDAQQ 233
>gi|306813166|ref|ZP_07447359.1| taurine transporter substrate binding subunit [Escherichia coli
NC101]
gi|281177539|dbj|BAI53869.1| taurine ABC transporter substrate binding component [Escherichia
coli SE15]
gi|305853929|gb|EFM54368.1| taurine transporter substrate binding subunit [Escherichia coli
NC101]
Length = 320
Score = 50.2 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/245 (11%), Positives = 63/245 (25%), Gaps = 22/245 (8%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRS 70
++++ V A + A + G + K + R+
Sbjct: 9 FLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQ-ADNTFAKESGATVDWRKFDSGASIVRA 67
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD 130
L + + I P E + + G L V
Sbjct: 68 LASGDVQIGNLGSSPLAVATSQQVPIE---VFLLASKLGNSEALVVKKTISKP------- 117
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
++L K + + + +L + + ++ I +
Sbjct: 118 -----EDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNLQPP----AIIAAWQRG 168
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKNIK 249
W P + + L E++ +G ++ VVR D+ +K P + +
Sbjct: 169 DIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPEVVKAFAKSA 228
Query: 250 FSVAL 254
Sbjct: 229 IDAQQ 233
>gi|157147035|ref|YP_001454354.1| taurine transporter substrate binding subunit [Citrobacter koseri
ATCC BAA-895]
gi|157084240|gb|ABV13918.1| hypothetical protein CKO_02812 [Citrobacter koseri ATCC BAA-895]
Length = 320
Score = 50.2 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/245 (11%), Positives = 63/245 (25%), Gaps = 22/245 (8%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRS 70
++++ V A + A + G + K + R+
Sbjct: 9 LLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQ-ADNTFAKESGATVDWRKFDSGASIVRA 67
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD 130
L + + I P E + + G L V
Sbjct: 68 LASGDVQIGNLGSSPLAVAASQQVPIE---VFLLASKLGESEALVVKKTIAKP------- 117
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
++L K + + + +L + + +I I +
Sbjct: 118 -----EDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIINLQPP----AIIAAWQRG 168
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKNIK 249
W P + + + L ++ +G ++ VVR D+ +K P + +
Sbjct: 169 DIDGAYVWAPAVNALEKDGNVLTDSGKVGEWGSPTLDVWVVRKDFAEKHPEVVKAFAKSA 228
Query: 250 FSVAL 254
Sbjct: 229 IDAQQ 233
>gi|331645538|ref|ZP_08346642.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli M605]
gi|330910159|gb|EGH38669.1| taurine-binding periplasmic protein TauA [Escherichia coli AA86]
gi|331045700|gb|EGI17826.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli M605]
Length = 320
Score = 50.2 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/245 (11%), Positives = 63/245 (25%), Gaps = 22/245 (8%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRS 70
++++ V A + A + G + K + R+
Sbjct: 9 FLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQ-ADNTFAKESGATVDWRKFDSGASIVRA 67
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD 130
L + + I P E + + G L V
Sbjct: 68 LASGDVQIGNLGSSPLAVATSQQVPIE---VFLLASKLGNSEALVVKKTISKP------- 117
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
++L K + + + +L + + ++ I +
Sbjct: 118 -----EDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNLQPP----AIIAAWQRG 168
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKNIK 249
W P + + L E++ +G ++ VVR D+ +K P + +
Sbjct: 169 DIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPEVVKAFAKSA 228
Query: 250 FSVAL 254
Sbjct: 229 IDAQQ 233
>gi|37524696|ref|NP_928040.1| DL-methionine transporter substrate-binding subunit [Photorhabdus
luminescens subsp. laumondii TTO1]
gi|36784121|emb|CAE12990.1| D-methionine-binding periplasmic protein precursor MetQ
[Photorhabdus luminescens subsp. laumondii TTO1]
Length = 271
Score = 50.2 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/278 (8%), Positives = 70/278 (25%), Gaps = 22/278 (7%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
L + ++ ++ + + + ++ G +
Sbjct: 10 TISALLGSLILSGCGQEKQDPNHIKVGVIVGAEQEV-AEIAKKVAKDKYGLDVELVTFND 68
Query: 65 PVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
V +L ID+ P +++ I + + A Y + +
Sbjct: 69 FVLPNEALSKGDIDLNAYQHKPYMDQQIKDRGYKMVTVGNSFVYPIAGYSKKIKSLDELQ 128
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
+ + + G ++ + + ++E + ++
Sbjct: 129 DGSQIALPNDPTNLGRSLLLLQKQG------LIKLKDGIGLLPTVLDVVENPKNLKLVEL 182
Query: 184 R-----RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
R + A+ + + S + + G + V +V +
Sbjct: 183 EAPQLPRSLDDQKIALAIINTTYA--SQIGLTPAKDGLFVEDKNSPYVNLLVSREDNKDA 240
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
N+ + +K + +E I N +
Sbjct: 241 ENVKKFVKAYQ--SDEVDEAANKIFNGG-----AVKGW 271
>gi|301025819|ref|ZP_07189326.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli MS 196-1]
gi|299879961|gb|EFI88172.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli MS 196-1]
gi|323943174|gb|EGB39330.1| taurine ABC transporter [Escherichia coli E482]
Length = 320
Score = 50.2 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/245 (11%), Positives = 63/245 (25%), Gaps = 22/245 (8%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRS 70
++++ V A + A + G + K + R+
Sbjct: 9 LLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQ-ADNTFAKESGATVDWRKFDSGASIVRA 67
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD 130
L + + I P E + + G L V
Sbjct: 68 LASGDVQIGNLGSSPLAVAASQQVSIE---VFLLASKLGNSEALVVKKTISKP------- 117
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
++L K + + + +L + + ++ I +
Sbjct: 118 -----EDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNLQPP----AIIAAWQRG 168
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKNIK 249
W P + + L E++ +G ++ VVR D+ +K P + +
Sbjct: 169 DIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPEVVKAFAKSA 228
Query: 250 FSVAL 254
Sbjct: 229 IDAQQ 233
>gi|296129185|ref|YP_003636435.1| Substrate-binding region of ABC-type glycine betaine transport
system [Cellulomonas flavigena DSM 20109]
gi|296021000|gb|ADG74236.1| Substrate-binding region of ABC-type glycine betaine transport
system [Cellulomonas flavigena DSM 20109]
Length = 337
Score = 50.2 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 7/66 (10%), Positives = 21/66 (31%), Gaps = 2/66 (3%)
Query: 216 EEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVG 273
++ +V V + + P + LL + E+ + + ++ V
Sbjct: 60 DDKGLQNADNVLPAVNAQVAAEHPTVLELLDAVSAALDTDRLIELNRAVDVERRTSAEVA 119
Query: 274 RTMLRT 279
+ +
Sbjct: 120 QDFVAE 125
>gi|319950432|ref|ZP_08024347.1| putative ABC transport system substrate binding protein [Dietzia
cinnamea P4]
gi|319435896|gb|EFV91101.1| putative ABC transport system substrate binding protein [Dietzia
cinnamea P4]
Length = 292
Score = 50.2 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/299 (9%), Positives = 67/299 (22%), Gaps = 35/299 (11%)
Query: 7 VCLFLTTFSISYARDADSCTP-------VRFADTGWTDIAATTAMTSVIL-EEILGYKTN 58
+ +S + S P V + + + L
Sbjct: 2 ALAGVVAMGLSGCQAQSSIVPAHRDDPVVVIETASFGEAEIVGHIYGNALVRSGSRVTAR 61
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML---- 114
+ S+ +G+ L F + ++ A + +
Sbjct: 62 PQSGTQAEVVESVVTGDATFTVGFTGELLTAFDSGATATEGDEVYAAMMAALPEGVTAAD 121
Query: 115 -----------AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK 163
+ G+++ D+ E + + +
Sbjct: 122 PAPAEDAPVYVVTRNTSETRGLRAMSDLTGRCGEF--TLGARQEALADGDLAAAVGEAYD 179
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+ + + R V L P+ +I L E
Sbjct: 180 CGFGRRV----ALGPNPRAVFDALRAGQVGVGLVQSADPVGLPEDIVTLDDDENAVR--A 233
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
++ + R L + + L+ I + E++ + + L +H
Sbjct: 234 QNLVPIFRKGSLSE--DQLSLVNRISGELTTDDVRELLLGVEFGTATPVALANYWLDSH 290
>gi|293418435|ref|ZP_06660870.1| taurine ABC transporter [Escherichia coli B088]
gi|291324963|gb|EFE64378.1| taurine ABC transporter [Escherichia coli B088]
gi|323184809|gb|EFZ70180.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli 1357]
gi|323945545|gb|EGB41599.1| taurine ABC transporter [Escherichia coli H120]
Length = 320
Score = 50.2 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/245 (11%), Positives = 63/245 (25%), Gaps = 22/245 (8%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRS 70
++++ V A + A + G + K + R+
Sbjct: 9 LLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQ-ADNTFAKESGASVDWRKFDSGASIVRA 67
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD 130
L + + I P E + + G L V
Sbjct: 68 LASGDVQIGNLGSSPLAVAASQQVPIE---VFLLASKLGNSEALVVKKTISKP------- 117
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
++L K + + + +L + + ++ I +
Sbjct: 118 -----EDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNLQPP----AIIAAWQRG 168
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKNIK 249
W P + + L E++ +G ++ VVR D+ +K P + +
Sbjct: 169 DIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPEVVKAFAKSA 228
Query: 250 FSVAL 254
Sbjct: 229 IDAQQ 233
>gi|189031307|gb|ACD74824.1| putative ABC transport solute-binding protein [Brachyspira
hyodysenteriae WA1]
Length = 346
Score = 49.8 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/286 (9%), Positives = 72/286 (25%), Gaps = 23/286 (8%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
++A L + + + + T ++ A + + M + L+E G+K
Sbjct: 13 LIACLFLLASCANKGSSSSGDATTLKVAVMPFLNSVPIEYMINNKLDEKYGFKIETVYFP 72
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND---VG 120
G+ S + + + +G +L D +
Sbjct: 73 SGGPMNEALGAGL---WEVGTLSAASVYSLANYNAHVVADIGHSEGGIEVLVNPDSDILT 129
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
K + ++ L K + G + ++ + ++ F
Sbjct: 130 VKGVNKDFPEVYGDAATLKGKTISVPTGTISHLNVIHWLRAINVDPNTVNIVH----MEF 185
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
Q + + P +++ + + + V + +K
Sbjct: 186 PQAYQALKAKKIDAAALNPPTSFSAEADGMKIVSSLTTLNIPQYDSIIVSDEAFNNKKDT 245
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRT---MLRTHPDL 283
I +K ++ + D + +
Sbjct: 246 IVLYIKAF----------LEACDALQADPNMAAQELLNWYTKNGST 281
>gi|161986576|ref|YP_309354.2| taurine transporter substrate binding subunit [Shigella sonnei
Ss046]
gi|194432548|ref|ZP_03064834.1| taurine ABC transporter, periplasmic taurine-binding protein
[Shigella dysenteriae 1012]
gi|331681759|ref|ZP_08382392.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli H299]
gi|194419109|gb|EDX35192.1| taurine ABC transporter, periplasmic taurine-binding protein
[Shigella dysenteriae 1012]
gi|323164153|gb|EFZ49960.1| taurine ABC transporter, periplasmic binding protein [Shigella
sonnei 53G]
gi|331080961|gb|EGI52126.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli H299]
gi|332085683|gb|EGI90847.1| taurine ABC transporter, periplasmic binding protein [Shigella
dysenteriae 155-74]
Length = 320
Score = 49.8 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/245 (11%), Positives = 63/245 (25%), Gaps = 22/245 (8%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRS 70
++++ V A + A + G + K + R+
Sbjct: 9 LLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQ-ADNTFAKESGASVDWRKFDSGASIVRA 67
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD 130
L + + I P E + + G L V
Sbjct: 68 LASGDVQIGNLGSSPLAVAASQQVPIE---VFLLASKLGNSEALVVKKTISKP------- 117
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
++L K + + + +L + + ++ I +
Sbjct: 118 -----EDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNLQPP----AIIAAWQRG 168
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKNIK 249
W P + + L E++ +G ++ VVR D+ +K P + +
Sbjct: 169 DIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPEVVKAFAKSA 228
Query: 250 FSVAL 254
Sbjct: 229 IDAQQ 233
>gi|323231219|gb|EGA15334.1| putative periplasmic protein [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
Length = 116
Score = 49.8 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/107 (20%), Positives = 32/107 (29%), Gaps = 6/107 (5%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--N 58
+ K+ L L + A PV T+ A M +LE G KT
Sbjct: 3 ISKLWVSSLALLATVSLPLQAAS---PVTVGSKIDTEGALLGNMILQVLESH-GVKTVNK 58
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAE 105
I+L PV ++ +DI+ Y F
Sbjct: 59 IQLGTTPVVRGAITAGELDIYPEYTGNGAFFFKDENDPAWKNAKQGF 105
>gi|229591157|ref|YP_002873276.1| putative aliphatic sulfonates binding protein [Pseudomonas
fluorescens SBW25]
gi|229363023|emb|CAY49989.1| putative aliphatic sulfonates binding protein precursor
[Pseudomonas fluorescens SBW25]
Length = 312
Score = 49.8 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/272 (10%), Positives = 75/272 (27%), Gaps = 29/272 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
K++ L A A + + + + + +L++ + +K
Sbjct: 4 KKLIVAASLLFA-----AAVAHAEQTLDISYQRSSTLWI-------LLKQNGQLEQRLKP 51
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
L V + + A + ++ A + Y + G
Sbjct: 52 LGFTVNWHEFSTG----LLSSLNAGSVDLHADVADAFALFTQAADAPLTYYAQENSSPGA 107
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
I Q +L K + G+ N ++ + +L +
Sbjct: 108 QAIIVQDQSPIHSIADLKGKTVAVSKGSGSNFLLISALKKAGLTLADITPRYLEAPDGGA 167
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNI 241
N ++ W+P + L+ H + G + + + + + + P++
Sbjct: 168 ----AFANGSVDAWVIWDPFLASQQLDHHVRVIADGKDGLADYNRFYLATTKFAKAHPDV 223
Query: 242 SRLLKNIKFSVALENEMMKLILNNKQDRQFVG 273
++ + E + + K +
Sbjct: 224 ------LQVTFDTLRETGQWV---KAHPKEAA 246
>gi|225619373|ref|YP_002720599.1| putative ABC transporter periplasmic binding protein [Brachyspira
hyodysenteriae WA1]
gi|254799467|sp|C0QY54|Y0430_BRAHW RecName: Full=Putative ABC transporter periplasmic binding protein
BHWA1_00430; AltName: Full=P-H7; Flags: Precursor
gi|225214192|gb|ACN82926.1| putative ABC transporter periplasmic binding protein [Brachyspira
hyodysenteriae WA1]
Length = 346
Score = 49.8 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/286 (9%), Positives = 72/286 (25%), Gaps = 23/286 (8%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
++A L + + + + T ++ A + + M + L+E G+K
Sbjct: 13 LIACLFLLASCANKGSSSSGDATTLKVAVMPFLNSVPIEYMINNKLDEKYGFKIETVYFP 72
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND---VG 120
G+ S + + + +G +L D +
Sbjct: 73 SGGPMNEALGAGL---WEVGTLSAASVYSLANYNAHVVADIGHSEGGIEVLVNPDSDILT 129
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
K + ++ L K + G + ++ + ++ F
Sbjct: 130 VKGVNKDFPEVYGDAATLKGKTIAVPTGTISHLNVIHWLRAINVDPNTVNIVH----MEF 185
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
Q + + P +++ + + + V + +K
Sbjct: 186 PQAYQALKAKKIDAAALNPPTSFSAEADGMKIVSSLTTLNIPQYDSIIVSDEAFNNKKDT 245
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRT---MLRTHPDL 283
I +K ++ + D + +
Sbjct: 246 IVLYIKAF----------LEACDALQADPNMAAQELLNWYTKNGST 281
>gi|310765619|gb|ADP10569.1| Taurine ABC transport system periplasmic protein [Erwinia sp.
Ejp617]
Length = 325
Score = 49.8 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/242 (12%), Positives = 68/242 (28%), Gaps = 22/242 (9%)
Query: 8 CLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPV 66
+ + ++S V A + A +E G + K +
Sbjct: 6 AVSILAAALSLTAPGAQAVDVTIAYQTSAEPAKVAQADGTFAKES-GANVDWRKFDSGSA 64
Query: 67 TFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIK 126
R+L + + I P E + + G+ L V
Sbjct: 65 VVRALASGDVQIGNIGSSPLAVAASQQVPIE---VFLLASQLGSSEALVVKKEI------ 115
Query: 127 SYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRD 186
+ ++L K + + + +L + + + ++I + I
Sbjct: 116 ------NHPQDLIGKRIAVPFISTTHYSLLAALKHWGIKPEQVQIINLQP----AAITAA 165
Query: 187 QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLL 245
+ W P + L +++ +G ++ VVR D+ +K P +
Sbjct: 166 WQRGDIDGAYVWAPAVNQLEKQGKVLTDSSQVAKWGAPTLDVWVVRKDFAEKHPEVVTAF 225
Query: 246 KN 247
Sbjct: 226 AR 227
>gi|15599133|ref|NP_252627.1| periplasmic taurine-binding protein precursor [Pseudomonas
aeruginosa PAO1]
gi|107103455|ref|ZP_01367373.1| hypothetical protein PaerPA_01004525 [Pseudomonas aeruginosa PACS2]
gi|116051978|ref|YP_789179.1| taurine ABC transporter periplasmic protein [Pseudomonas aeruginosa
UCBPP-PA14]
gi|218889780|ref|YP_002438644.1| putative periplasmic taurine-binding protein precursor [Pseudomonas
aeruginosa LESB58]
gi|254242626|ref|ZP_04935948.1| hypothetical protein PA2G_03385 [Pseudomonas aeruginosa 2192]
gi|9950124|gb|AAG07325.1|AE004811_8 probable periplasmic taurine-binding protein precursor [Pseudomonas
aeruginosa PAO1]
gi|115587199|gb|ABJ13214.1| probable ABC-type taurine transporter, periplasmic component
[Pseudomonas aeruginosa UCBPP-PA14]
gi|126196004|gb|EAZ60067.1| hypothetical protein PA2G_03385 [Pseudomonas aeruginosa 2192]
gi|218770003|emb|CAW25765.1| probable periplasmic taurine-binding protein precursor [Pseudomonas
aeruginosa LESB58]
Length = 337
Score = 49.8 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/253 (10%), Positives = 66/253 (26%), Gaps = 20/253 (7%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-I 59
M + ++ + + + A + D + E+ +G K +
Sbjct: 1 MKRPNSLHRLVAALAFASLSVAAQAADITVGYQTGIDPTKVPQ-ADGLYEKAIGEKIDWR 59
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ + P +L + + + P I N
Sbjct: 60 RFNSGPEVIAALASGDLQLGNIGSSPLAAATSRKLPIVAFIVSAQIN------------- 106
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+ ++L K + + +L + + + +++ +
Sbjct: 107 AAEALVVRNGSGIGKPEDLVGKTIATPFVSTSHYSLLGALKHWQIDPSKVKIVNLNP--- 163
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEAS-VYTVVRSDYLDKC 238
++I R W P + L E+ +G + V R D+ +K
Sbjct: 164 -AEIAAAWRRGDIDGAFVWSPALGEIKKSGKVLTDAAEVGQWGAPTFEVWVARKDFAEKH 222
Query: 239 PNISRLLKNIKFS 251
P I +
Sbjct: 223 PEIVARFARVSLD 235
>gi|254236831|ref|ZP_04930154.1| hypothetical protein PACG_02851 [Pseudomonas aeruginosa C3719]
gi|296387537|ref|ZP_06877012.1| putative periplasmic taurine-binding protein precursor [Pseudomonas
aeruginosa PAb1]
gi|126168762|gb|EAZ54273.1| hypothetical protein PACG_02851 [Pseudomonas aeruginosa C3719]
Length = 337
Score = 49.8 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 29/253 (11%), Positives = 66/253 (26%), Gaps = 20/253 (7%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-I 59
M + ++ + + + A + D + E+ +G K +
Sbjct: 1 MKRPNSLHRLVAALAFASLSVAAQAADITVGYQTGIDPTKVPQ-ADGLYEKAIGEKIDWR 59
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ + P +L + + + P I N A + + +
Sbjct: 60 RFNSGPEVIAALASGDLQLGNIGSSPLAAATSRKLPIVAFIVSAQINAAEALVVRNGSGI 119
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
G + + + G + + + ++N N
Sbjct: 120 GKPEDLAGKTIATPFVSTSHYSLLGALKHWQIDPSKVKIVNLNP---------------- 163
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEAS-VYTVVRSDYLDKC 238
++I R W P + L E+ +G + V R D+ +K
Sbjct: 164 -AEIAAAWRRGDIDGAFVWSPALGEIKKSGKVLTDAAEVGQWGAPTFEVWVARKDFAEKH 222
Query: 239 PNISRLLKNIKFS 251
P I +
Sbjct: 223 PEIVARFARVSLD 235
>gi|157149286|ref|YP_001456605.1| cytoplasmic membrane lipoprotein-28 [Citrobacter koseri ATCC
BAA-895]
gi|157086491|gb|ABV16169.1| hypothetical protein CKO_05126 [Citrobacter koseri ATCC BAA-895]
Length = 301
Score = 49.4 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/252 (7%), Positives = 58/252 (23%), Gaps = 19/252 (7%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP 65
A L + + ++ + + + +E G + +
Sbjct: 41 AAVLLAGILLAGCDQQSSDAKHIKVGVINGAEQDV-AEVAKKVAKEKYGLDVELVGFSGS 99
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
+ N + F+ + + LVA G++ I
Sbjct: 100 LLPNDATN---HGELDANVFQHRPFLEQDNKAHNYTLVAV-----GNTFVFPMAGYSKKI 151
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI---NNNKFSLKGFRLIEASELASFSQ 182
K+ + + +I + + + +
Sbjct: 152 KTVDQLKDGATIAIPNDPTNLGRALLLLQKEKLITLKEGKGLLPTALDITDNPRHLNIME 211
Query: 183 IRRD-----QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDK 237
+ + V + + + L+ + E V +V +
Sbjct: 212 LEGAQLPRVLDDAKVDVAIISTTYIQQTGLSPVHDSVFIEDKNSP--YVNILVAREDNKD 269
Query: 238 CPNISRLLKNIK 249
N+ L++ +
Sbjct: 270 AENVKAFLQSYQ 281
>gi|269955878|ref|YP_003325667.1| Substrate-binding region of ABC-type glycine betaine transport
system [Xylanimonas cellulosilytica DSM 15894]
gi|269304559|gb|ACZ30109.1| Substrate-binding region of ABC-type glycine betaine transport
system [Xylanimonas cellulosilytica DSM 15894]
Length = 341
Score = 49.4 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 16/201 (7%), Positives = 43/201 (21%), Gaps = 25/201 (12%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTF--RSLKNKGIDIFMGYWY 84
+ + + A + + +L GY+ + + + I + Y
Sbjct: 144 TIAVGAADFAESATLGNIYAEVLRSA-GYEVTVTTVGNREAYLPALRAGDQIQVVPEYVG 202
Query: 85 PSLEKFIAPYLEEGSIKLVAENLQ---------GAKYMLAVNDVGFALGIKSYQDIAKYK 135
E + + + NL G + L A ++ +
Sbjct: 203 TLAEFVNRSVNGADAEPVASGNLDETVVALTALGTEAGLVFGTPSAAQNQNAFAVTQAFA 262
Query: 136 KEL-----------GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
E + + + + L + + +
Sbjct: 263 DEHNLSTLSDLAAVCQGLVLGAGPECTERPFCQPGLEDVYGLTFSQFRSLDAGGPLT--K 320
Query: 185 RDQRNNIPAVFLSWEPHPINS 205
R + L +
Sbjct: 321 EALRQGEITLGLVFSSDGALG 341
>gi|323976152|gb|EGB71245.1| taurine ABC transporter [Escherichia coli TW10509]
Length = 320
Score = 49.4 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/245 (11%), Positives = 63/245 (25%), Gaps = 22/245 (8%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRS 70
++++ V A + A + G + K + R+
Sbjct: 9 LLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQ-ADNTFAKESGATVDWRKFDSGASIVRA 67
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD 130
L + + I P E + + G L V
Sbjct: 68 LASGDVQIGNLGSSPLAVAASQQVPIE---VFLLASKLGNSEALVVKKTISKP------- 117
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
++L K + + + +L + + ++ I +
Sbjct: 118 -----EDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNLQPP----AIIAAWQRE 168
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKNIK 249
W P + + L E++ +G ++ VVR D+ +K P + +
Sbjct: 169 DIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPEVVKAFAKSA 228
Query: 250 FSVAL 254
Sbjct: 229 IDAQQ 233
>gi|218659708|ref|ZP_03515638.1| putative amino acid ABC transporter, substrate-binding protein
[Rhizobium etli IE4771]
Length = 85
Score = 49.1 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 7/57 (12%), Positives = 23/57 (40%), Gaps = 7/57 (12%)
Query: 251 SVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFM 307
+ A N+++ N++ + LR + +L W+ + + +++ +
Sbjct: 36 TNATINQVLAWQDENRESNEDAAIHFLRNYENLWSKWVP-------AEIAEKIKASL 85
>gi|310764922|gb|ADP09872.1| DL-methionine transporter substrate-binding subunit [Erwinia sp.
Ejp617]
Length = 271
Score = 49.1 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 28/283 (9%), Positives = 73/283 (25%), Gaps = 24/283 (8%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K A L D + P ++ ++ + + + +E G +
Sbjct: 5 FKTFAAVGALIGTLALVGCDQKAKDPNHIKVGVIVGSEQQV-AEIAAKVAKEKYGLDVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V +L ID P L++ I + A Y +
Sbjct: 64 VTFNDYVLPNEALSKGDIDANAFQHKPYLDQQIKDRGYKLVSVGNTFVYPIAGYSKKIKS 123
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ + + G ++ + + ++E +
Sbjct: 124 LDELQNGAQVAIPNDPTNLGRTLLLLQKVG------LIKLKDGVGLLPTSLDVVENPKNL 177
Query: 179 SFSQIR-----RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
++ R + A+ + + S +N+ G + V +V +
Sbjct: 178 KLVELEAPQLPRSLDDQQIALAVINTTYA--SQINLTPAKDGIFVEDKNSPYVNLIVARE 235
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
N+ + ++ + N+ + N +
Sbjct: 236 DNKDAENVKKFVQAYQ--SDEVNDAANKVFNGG-----AVKGW 271
>gi|251788482|ref|YP_003003203.1| DL-methionine transporter substrate-binding subunit [Dickeya zeae
Ech1591]
gi|247537103|gb|ACT05724.1| lipoprotein, YaeC family [Dickeya zeae Ech1591]
Length = 271
Score = 49.1 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 29/277 (10%), Positives = 71/277 (25%), Gaps = 14/277 (5%)
Query: 3 KILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
K LA L + P ++ + + + +E G +
Sbjct: 6 KSLAAVGALIGALALAGCGQEQKNPNHIKVGVIVGAEQQV-AEIAQKVAKEKYGLDVELV 64
Query: 61 LLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
V +L ID+ P L++ I + A Y + +
Sbjct: 65 TFNDYVLPNEALSKGDIDLNAFQHKPYLDQQIKDRGYKLVSVGNTFVYPIAGYSKKIKSL 124
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+ + + G + + ++ + +
Sbjct: 125 TELQNGAQVALPNDPTNLGRSLLLLQKVGLIKLKDNVGLLPT-VLDVTENQKNLKLVELE 183
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
Q+ R ++ A+ + + S +N+ G + V +V +
Sbjct: 184 APQLPRSLDDDQIALAIINTTYA--SQINLTPTKDGLFVEEKDSPYVNLLVAREDNKDAE 241
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
N+ + +K + N+ + N +
Sbjct: 242 NVKKFVKAYQ--SDEVNQAALKVFNGG-----AVKGW 271
>gi|317494365|ref|ZP_07952779.1| taurine ABC transporter [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316917615|gb|EFV38960.1| taurine ABC transporter [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 332
Score = 49.1 bits (115), Expect = 9e-04, Method: Composition-based stats.
Identities = 31/252 (12%), Positives = 66/252 (26%), Gaps = 22/252 (8%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-I 59
M K ++ S++ A + V A + A + G +
Sbjct: 2 MSKTFSLRGVAAFLSLTLAATSAYALDVTVAYQTSAEPAKVAQ-ADNTFAKASGANVDWR 60
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
K + ++L + + I P E + + G L V
Sbjct: 61 KFDSGSSVVKALASGDVQIGNIGSSPLAAAVSQGLPIE---VFLLASQLGNSEALVVKKE 117
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
K ++L K + + + +L + + ++
Sbjct: 118 I------------KSPQDLIGKRIAVPFVSTTHYSLLAALKHWGIKPDQLNILNLQPP-- 163
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKC 238
I + W P L E++ +G ++ VVR D+ +
Sbjct: 164 --AIAAAWQRGDIDGAYVWAPAVNELAKTGSVLTDSEQVGQWGAPTLDVWVVRKDFAQQH 221
Query: 239 PNISRLLKNIKF 250
P++
Sbjct: 222 PDVVTAFARTTL 233
>gi|259907570|ref|YP_002647926.1| DL-methionine transporter substrate-binding subunit [Erwinia
pyrifoliae Ep1/96]
gi|224963192|emb|CAX54676.1| D-methionine-binding lipoprotein MetQ [Erwinia pyrifoliae Ep1/96]
gi|283477412|emb|CAY73328.1| Methionine ABC transport system, periplasmic component [Erwinia
pyrifoliae DSM 12163]
Length = 271
Score = 49.1 bits (115), Expect = 9e-04, Method: Composition-based stats.
Identities = 28/283 (9%), Positives = 73/283 (25%), Gaps = 24/283 (8%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K A L D + P ++ ++ + + + +E G +
Sbjct: 5 FKTFAAVGALIGTLALVGCDQKAKDPNHIKVGVIVGSEQQV-AEIAAKVAKEKYGLDVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V +L ID P L++ I + A Y +
Sbjct: 64 VTFNDYVLPNEALSKGDIDANAFQHKPYLDQQIKDRGYKLVSVGNTFVYPIAGYSKKIKS 123
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ + + G ++ + + ++E +
Sbjct: 124 LDELQNGAQVAIPNDPTNLGRTLLLLQKVG------LIKLKDGVGLLPTTLDVVENPKNL 177
Query: 179 SFSQIR-----RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
++ R + A+ + + S +N+ G + V +V +
Sbjct: 178 KLVELEAPQLPRSLDDQQIALAVINTTYA--SQINLTPAKDGIFVEDKNSPYVNLIVARE 235
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
N+ + ++ + N+ + N +
Sbjct: 236 DNKDAENVKKFVQAYQ--SDEVNDAANKVFNGG-----AVKGW 271
>gi|91789479|ref|YP_550431.1| ABC type periplasmic choline/glycine/betaine-binding protein
[Polaromonas sp. JS666]
gi|91698704|gb|ABE45533.1| ABC type periplasmic choline/glycine/betaine binding protein
[Polaromonas sp. JS666]
Length = 188
Score = 49.1 bits (115), Expect = 9e-04, Method: Composition-based stats.
Identities = 29/185 (15%), Positives = 48/185 (25%), Gaps = 23/185 (12%)
Query: 1 MYKI-LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M I + L + A PVR T+ M + LE G KT
Sbjct: 1 MKSIQRRAAMLLVGALAAGGVLAQGVAPVRVGSKIDTEGKLLGNMIVLALEAN-GIKTEN 59
Query: 60 K--LLAVPVTFRSLKNKGIDIFMGYWYP------------------SLEKFIAPYLEEGS 99
K L V ++ ID++ Y E+ ++
Sbjct: 60 KASLGNTKVVRGAITAGEIDLYPEYTGNGAFIFSEESSPVWKNAKAGYERVKTLDYDKNK 119
Query: 100 IKLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
I + + + +AV +K+ D+ K+ G L
Sbjct: 120 IVWLEPSPANNTWAIAVRKEVANANKLKTLDDLGKWITGGGQFKLAASAEFVERSDALPA 179
Query: 159 INNNK 163
Sbjct: 180 FQAAY 184
>gi|254229538|ref|ZP_04922951.1| hypothetical protein VEx25_B0052 [Vibrio sp. Ex25]
gi|151937911|gb|EDN56756.1| hypothetical protein VEx25_B0052 [Vibrio sp. Ex25]
Length = 325
Score = 49.1 bits (115), Expect = 9e-04, Method: Composition-based stats.
Identities = 37/279 (13%), Positives = 69/279 (24%), Gaps = 27/279 (9%)
Query: 1 MYKI-LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYK 56
M KI L + T A A VR A T + + +L E+ GYK
Sbjct: 54 MKKIALTLAATSITLVSYSAFSAQDGEHVRLAT---TTSTYHSGLLDYLLPQFEKDTGYK 110
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP---------YLEEGSIKLVAENL 107
++ + +N +D+ M + + F+ + I +
Sbjct: 111 VDVIAAGTGKALKMGENGDVDLVMTHAPKAEGTFVEKGYGVLPRKLMYNDFVIVGPKADP 170
Query: 108 QGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
K V DV + K+ I++ K E G +I + +
Sbjct: 171 AKIKNDEGVLDVFKEIANKNATFISRGDDSGTHKK---EMGFWAQTKIEPNFGGYRSVGQ 227
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
G + + L ++
Sbjct: 228 GMGPTLNMASEMQG--YTMTDRGT-WLAYQNKLDLEILFQGDEKLFNPYQVILVNPERYP 284
Query: 228 TV---VRSDYLDK--CPNISRLLKNIKFSVALENEMMKL 261
T+ + D P L+ + +
Sbjct: 285 TINYQGAKAFSDWLVNPRGQELINGFRLNGKQLFVANAE 323
>gi|262274681|ref|ZP_06052492.1| methionine ABC transporter substrate-binding protein [Grimontia
hollisae CIP 101886]
gi|262221244|gb|EEY72558.1| methionine ABC transporter substrate-binding protein [Grimontia
hollisae CIP 101886]
Length = 270
Score = 49.1 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 29/282 (10%), Positives = 72/282 (25%), Gaps = 22/282 (7%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCT--PVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
+ KI A +T ++ ++ V+ + + + + +E G
Sbjct: 5 LKKIAAAVGLASTLVLTGCGQEETVDLTKVKIGVMAGAEEQV-AEVAAKVAKEKYGLDVE 63
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ V + + F + I A L
Sbjct: 64 LVTFTDYV--------SPNAALEEGAIDANAFQHKPYLDQQISDRGYKFAIAGNTLVYPI 115
Query: 119 VGFALGIKSYQDIAKYKKEL---GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
G++ I S + I + G Q ++D+ + +I
Sbjct: 116 AGYSSKITSVEQIEDGAQIAVPNDPTNLGRSLLLLEKQGLIDVKDEAGLKATVLDIISNP 175
Query: 176 ELASFSQIRRD-QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDY 234
+ ++ ++ V L+ S +N+ G + V +V
Sbjct: 176 KNLKIVELEAAQLPRSLDDVTLAVINTTYASAINLSPEKDGIFVEDKESPYVNLIVARKD 235
Query: 235 LDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
N+ + +++ + I + +
Sbjct: 236 NVDAQNVKQFVQSYQ--TDTVYNAASEIFDGG-----AVKGW 270
>gi|169628476|ref|YP_001702125.1| lipoprotein LpqZ [Mycobacterium abscessus ATCC 19977]
gi|169240443|emb|CAM61471.1| Probable lipoprotein LpqZ [Mycobacterium abscessus]
Length = 277
Score = 49.1 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 33/280 (11%), Positives = 67/280 (23%), Gaps = 15/280 (5%)
Query: 8 CLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVT 67
L + + + T + + +++ G T ++ A PVT
Sbjct: 2 LLAAVAVLAGCSENHGPAPYLTVVTTNDAQYRVLAHIYAAVVKA-TGIDTKVRESADPVT 60
Query: 68 FRSLKNKGIDIFMGYWYPSLEKFIA----PYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+ + A A + AL
Sbjct: 61 ELDTGIASVAPGFTGRVLRRFAPQQRPSGDEETAYKAMIAALPAGVAAADYGTAEDRAAL 120
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
+ S + + + G Q + + A ++
Sbjct: 121 AVTSSPGASAKPTLAAFVRH-CDQLARGGQVGQGPVPLPRIGSCATGTPRQYASA--GEL 177
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
R V ++W + +E SV + R + L + +S
Sbjct: 178 FAALRRGE--VAVAWTSTANPALPADGVTLLDDEKQWLPANSVVPLYRRNELTEAQVLS- 234
Query: 244 LLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTHP 281
L + + + M + + D Q V T L H
Sbjct: 235 -LNKVAGELTTGDLAAMTREVS-GGADPQRVVGTWLNDHQ 272
>gi|255522454|ref|ZP_05389691.1| hypothetical protein LmonocFSL_14779 [Listeria monocytogenes FSL
J1-175]
Length = 81
Score = 49.1 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 10/81 (12%), Positives = 19/81 (23%), Gaps = 8/81 (9%)
Query: 1 MYKILAVCLFLTTFSISYARD--------ADSCTPVRFADTGWTDIAATTAMTSVILEEI 52
M K + + S S +R T+ + + ++E
Sbjct: 1 MKKKFIALFSVLLLTSSLFLSSCSLPGLGGSSKDTIRIGAMATTESQIVSNILKELIEHD 60
Query: 53 LGYKTNIKLLAVPVTFRSLKN 73
G K I +
Sbjct: 61 TGLKVEIVNNLGSTIVQHQAM 81
>gi|289805549|ref|ZP_06536178.1| putative periplasmic protein [Salmonella enterica subsp. enterica
serovar Typhi str. AG3]
Length = 102
Score = 49.1 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 32/101 (31%), Gaps = 6/101 (5%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--N 58
+ K+ L L + A PV T+ A M +LE G KT
Sbjct: 3 ISKLWVSSLALLATVSLPLQAAS---PVTVGSKIDTEGALLGNMILQVLESH-GVKTVNK 58
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS 99
I+L PV ++ +DI+ Y F
Sbjct: 59 IQLGTTPVVRGAITAGELDIYPEYTGNGAFFFKDENDPAWK 99
>gi|193065164|ref|ZP_03046237.1| taurine ABC transporter, periplasmic taurine-binding protein
[Escherichia coli E22]
gi|260842569|ref|YP_003220347.1| taurine transporter subunit TauA [Escherichia coli O103:H2 str.
12009]
gi|192927138|gb|EDV81759.1| taurine ABC transporter, periplasmic taurine-binding protein
[Escherichia coli E22]
gi|257757716|dbj|BAI29213.1| taurine transporter subunit TauA [Escherichia coli O103:H2 str.
12009]
Length = 320
Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 29/245 (11%), Positives = 63/245 (25%), Gaps = 22/245 (8%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRS 70
++++ V A + A + G + K + R+
Sbjct: 9 LLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQ-ADNTFAKESGASVDWRKFDSGASIVRA 67
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD 130
L + + I P E + + G L V
Sbjct: 68 LASGDVQIGNLGSSPLAVAASQQVPIE---VFLLASKLGNSEALVVKKTISKP------- 117
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
++L K + + + +L + + ++ I +
Sbjct: 118 -----EDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNLQPP----AIIAAWQRG 168
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKNIK 249
W P + + L E++ +G ++ VVR DY +K P + +
Sbjct: 169 DIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDYAEKHPEVVKAFAKSA 228
Query: 250 FSVAL 254
Sbjct: 229 IDAQQ 233
>gi|323694528|ref|ZP_08108695.1| hypothetical protein HMPREF9475_03559 [Clostridium symbiosum
WAL-14673]
gi|323501402|gb|EGB17297.1| hypothetical protein HMPREF9475_03559 [Clostridium symbiosum
WAL-14673]
Length = 115
Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 4/43 (9%), Positives = 14/43 (32%), Gaps = 2/43 (4%)
Query: 240 NISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ ++L + + +M + + + V L +
Sbjct: 68 ELEQVLSKLDGRIDEKTMADMNSKVDVEGKSAEEVAHQFLEEN 110
>gi|320169536|gb|EFW46435.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 586
Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 16/168 (9%), Positives = 43/168 (25%), Gaps = 23/168 (13%)
Query: 144 GIEPGNEGNQRILDMINNN---KFSLKGFRLIEASELASFSQIRR-------DQRNNIPA 193
G + ++ L + +L + + P
Sbjct: 56 GAPITMWTVPDSWNALDREIVQGLELNMNVVCPVPDLGPEATLNAIVQVLGAAYYLRQPF 115
Query: 194 VFLSWEPHPINSD-------------LNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ + +PH +D H G G+ V + S K
Sbjct: 116 ITYAGKPHFAFADNSPIRLRRVQLPEYQSHCNETGVYRCGYRGKPVIKLASSKLSSKNSV 175
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+K ++ ++ ++ + + ++ + L+ +L
Sbjct: 176 AFDYVKQFSYTGDDQSNILGRVYFAGLTLEEASCEWVQANFATLEPYL 223
>gi|271501811|ref|YP_003334837.1| lipoprotein, YaeC family [Dickeya dadantii Ech586]
gi|270345366|gb|ACZ78131.1| lipoprotein, YaeC family [Dickeya dadantii Ech586]
Length = 271
Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 30/282 (10%), Positives = 74/282 (26%), Gaps = 24/282 (8%)
Query: 3 KILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
K LA L + P ++ + + + +E G +
Sbjct: 6 KSLAAVGALIGALALAGCGQEQKNPNHIKVGVIVGAEQQV-AEVAQKVAKEKYGLDVELV 64
Query: 61 LLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
V +L ID+ P L++ I + A Y + +
Sbjct: 65 TFNDYVLPNEALSKGDIDLNAFQHKPYLDQQIKDRGYKLVSVGNTFVYPIAGYSKKIKSL 124
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+ + + G ++ + +N ++E +
Sbjct: 125 SELQNGAQIALPNDPTNLGRSLLLLQKVG------LIKLKDNVGLLPTALDVVENPKNLK 178
Query: 180 FSQIR-----RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDY 234
++ R ++ A+ + + S +N+ G + V +V +
Sbjct: 179 LVELEAPQLPRSLDDDQIALAIINTTYA--SQINLTPAKDGLFVEDKNSPYVNLLVARED 236
Query: 235 LDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
N+ + +K + N+ + N +
Sbjct: 237 NKDAENVKKFVKAYQ--SEEVNQAALKVFNGG-----AVKGW 271
>gi|218515635|ref|ZP_03512475.1| glycine betaine ABC transporter, substrate binding protein
[Rhizobium etli 8C-3]
Length = 73
Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 2/66 (3%)
Query: 216 EEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVG 273
++ + ++R L P I +L I S ++ I + + + V
Sbjct: 3 DDKGVQQVYAPTPIIREAVLKANPKIEEILSPIFKSLSADELRKLNAKIQVDGEPAKSVA 62
Query: 274 RTMLRT 279
L+
Sbjct: 63 EAYLKE 68
>gi|170767830|ref|ZP_02902283.1| taurine ABC transporter, periplasmic taurine-binding protein
[Escherichia albertii TW07627]
gi|170123318|gb|EDS92249.1| taurine ABC transporter, periplasmic taurine-binding protein
[Escherichia albertii TW07627]
Length = 320
Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 28/245 (11%), Positives = 63/245 (25%), Gaps = 22/245 (8%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRS 70
++++ V A + A + G + K + R+
Sbjct: 9 FLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQ-ADNTFAKASGATVDWRKFDSGASIVRA 67
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD 130
L + + I P E + + G+ L V
Sbjct: 68 LASGDVQIGNLGSSPLAVAASQQVPIE---VFLLASKLGSSEALVVKKTISKP------- 117
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
++L K + + + +L + + ++ I +
Sbjct: 118 -----EDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNLQPP----AIIAAWQRG 168
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKNIK 249
W P + + L E + +G ++ VVR D+ +K P + +
Sbjct: 169 DIDGAYVWAPAVNALEKDGKVLTDSERVGQWGAPTLDVWVVRKDFAEKHPEVVKAFAKSA 228
Query: 250 FSVAL 254
Sbjct: 229 LDAQQ 233
>gi|169629327|ref|YP_001702976.1| putative nitrate ABC transporter, periplasmic protein
[Mycobacterium abscessus ATCC 19977]
gi|169241294|emb|CAM62322.1| Putative nitrate ABC transporter, periplasmic protein
[Mycobacterium abscessus]
Length = 465
Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 40/275 (14%), Positives = 75/275 (27%), Gaps = 34/275 (12%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCT----PVRFADTGWTDIAATTAM---TSVILEEIL 53
M + + L + + D+ S + V T T LE+ L
Sbjct: 1 MKRTALLASMLIALATGCSLDSGSGSSQEVTVVIGYQSKTINTVTAGTLLRAQGYLEKRL 60
Query: 54 G---------YKTNIKLLAVP-VTFRSLKNKGIDIFMGYWYP----SLEKFIAPYLEEGS 99
G Y + + + IDI YP +
Sbjct: 61 GDLTSRTGTKYTVQWQDYDTGAPITAQMLAEKIDIGSMGDYPLLINGSKTQANEKARTEL 120
Query: 100 IKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI 159
+ + N +G+ M+ V + + K +G+ +G N +
Sbjct: 121 VSITGYNAKGSLNMVVVPPNSAITELPELKG-KKVSASVGSAGHGTLVRALRNDGLDPTR 179
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
+ + + A E + + F++W P + L G E++
Sbjct: 180 DVEVLNQQPQVGASALESGQVQALSQ---------FVAW-PGLLVFQNKAKLLYDGAELN 229
Query: 220 GFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVAL 254
V VVR DY + P + +
Sbjct: 230 VPTFHGV--VVRRDYATQHPEVLDAFLQAQLDATD 262
>gi|294816401|ref|ZP_06775044.1| Putative ABC transporter substrate-binding protein [Streptomyces
clavuligerus ATCC 27064]
gi|326444729|ref|ZP_08219463.1| putative ABC transporter substrate-binding protein [Streptomyces
clavuligerus ATCC 27064]
gi|294329000|gb|EFG10643.1| Putative ABC transporter substrate-binding protein [Streptomyces
clavuligerus ATCC 27064]
Length = 370
Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 30/309 (9%), Positives = 78/309 (25%), Gaps = 45/309 (14%)
Query: 6 AVCLFLTTFSISYARDADSCTPV--------RFADTGWTDI------------------- 38
A + + V G+T+
Sbjct: 15 ATLAVAGACMTGPSLENRDRGTVPPGDSHRLTVGSAGFTESDLLAQLYALLLRNAGHPAD 74
Query: 39 --AATT-AMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYP--SLEKFIAP 93
T + LE + A + + K G + +
Sbjct: 75 VLTVTNREIYEPALESGR-IDVVPEYAATFADWLNAKANGAGAPPVGSPDLATTMTALRR 133
Query: 94 YLEEGSIKLVAENLQGAKYMLAV-NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGN 152
E + ++ + AV + G+K+ D+ + +L ++ + E
Sbjct: 134 LAEPRGLDVLPPGRAVDQNAFAVGREYAARHGLKTLSDLGR--SKLPVRLAAGDECVERP 191
Query: 153 QRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYL 212
+ + + + +Q ++ + + L+ ++ L
Sbjct: 192 YCEPGLRSVYGIDITAVD----PKGVGTTQSKQAVQRGQDQMMLTTTTDATLDAFDLVLL 247
Query: 213 PGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQ 270
+ + VV P I+R L + + + + + + ++ +
Sbjct: 248 QD--DRHLQNADYIVPVVNRARAGS-PGIARALARLNTVLTTGDLAGLNERVDSWRRLPE 304
Query: 271 FVGRTMLRT 279
V R L+
Sbjct: 305 DVARQYLQE 313
>gi|311280744|ref|YP_003942975.1| taurine ABC transporter, periplasmic binding protein [Enterobacter
cloacae SCF1]
gi|308749939|gb|ADO49691.1| taurine ABC transporter, periplasmic binding protein [Enterobacter
cloacae SCF1]
Length = 320
Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 27/240 (11%), Positives = 64/240 (26%), Gaps = 22/240 (9%)
Query: 10 FLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTF 68
F ++++ V A + A G + K +
Sbjct: 7 FSFLAALAFLTFQAQAVTVTVAYQTSAEPAKVAQ-ADNTFARASGATVDWRKFDSGASVV 65
Query: 69 RSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSY 128
R+L + + I P E + + G L V
Sbjct: 66 RALASGDVQIGNIGSSPLAVAASQQVPIE---VFLLASQLGNSEALVVKKNISKP----- 117
Query: 129 QDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQR 188
++L K + + + +L + + + +++ I +
Sbjct: 118 -------QDLIGKRIAVPFISTTHYSLLAALKHWGITPSQVQIVNLQPP----AIIAAWQ 166
Query: 189 NNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKN 247
W P + + L ++ +G ++ VVR D+ ++ P + +
Sbjct: 167 RGDIDGAYVWAPAVNELEKDGTVLTDSAQVGQWGAPTLDVWVVRKDFAEQHPEVVKAFAK 226
>gi|54026681|ref|YP_120923.1| putative transporter substrate-binding protein [Nocardia farcinica
IFM 10152]
gi|54018189|dbj|BAD59559.1| putative transporter substrate-binding protein [Nocardia farcinica
IFM 10152]
Length = 294
Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 32/299 (10%), Positives = 71/299 (23%), Gaps = 33/299 (11%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPV-RFADTGWTDIAATTAMTSVIL-EEILGYKTNI 59
++LA L + + + PV + + + L L +
Sbjct: 7 RRVLARMLVAALAVFAVSCGSAEDEPVFVVGAGDSAESRVLAEIYAGALARTGLPVRVRT 66
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
L T +L + + + L F ++ + L V D
Sbjct: 67 GLGDRAGTLAALDAGAVGLVGEHTGALLAAFDGTAEVTTPAEVGTALNRSLPEGLVVADP 126
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+ ++ + + + A+ G++ I L+
Sbjct: 127 AESADLRPRLLV----EPVAARRDGLDS---VRALIPRCPATTAGVATVPGLLPPGAAIR 179
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF---GEASVYTV-VRSDYL 235
++ + P P + + + G A TV D+
Sbjct: 180 VAECEFAAVTSFP------SPEALVQAVRTGVVGVGVLTGPPELVPAADGLTVLADEDFA 233
Query: 236 DKCPNISRLLKNIKFSVALENEMMKLILN--------------NKQDRQFVGRTMLRTH 280
+ N+ LL+ ++ + R L H
Sbjct: 234 VRAENVVPLLRKGVLDDQRTRKLNYVAGELTTAELVELVRAVGTGSAPAESARQWLDAH 292
>gi|299770149|ref|YP_003732175.1| sulfate ester binding protein [Acinetobacter sp. DR1]
gi|298700237|gb|ADI90802.1| sulfate ester binding protein [Acinetobacter sp. DR1]
Length = 355
Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 47/276 (17%), Positives = 86/276 (31%), Gaps = 42/276 (15%)
Query: 1 MY-KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIA--ATTAMTSVI-----LEEI 52
M I + L+ + +A A+S +R T A + V+ LE+
Sbjct: 1 MKPSIFKKLILLSLLAFGHASYAESLKTIRIGSPDLTAGQKHAGGGVVDVLYNKKWLEQE 60
Query: 53 L---GYKTNIKL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL 107
L K A P +L N +D P I +L+
Sbjct: 61 LAKNNVKVEWHFFKGAGPAINEALANNQLDFAFLGDLP----PIIGKANGLDTQLLVPTA 116
Query: 108 QGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
+G LAV K EL K G+ G + +N+ L
Sbjct: 117 RGITNYLAVRSDLP----------IKNFAELKGKRVGLLRGTADELSFVSALNSQGLKLS 166
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG---EEISGFGEA 224
R++ F+ + SW P + + H + +++G G
Sbjct: 167 DVRVVNLD----FNAVNAALAAKKIDA--SWGPSRFFALRDKHIVNLPISSRQLNGAGST 220
Query: 225 SVYTVVRSDYLDKCPN-----ISRLLKNIKF-SVAL 254
+ R ++ + PN +++++K + + S
Sbjct: 221 QGVFLGRQSFIRQYPNETQQVVTQVVKGLSWLSNEQ 256
>gi|170768645|ref|ZP_02903098.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Escherichia albertii TW07627]
gi|170122749|gb|EDS91680.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Escherichia albertii TW07627]
Length = 271
Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 24/283 (8%), Positives = 68/283 (24%), Gaps = 24/283 (8%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K A L D P ++ + + + ++ G +
Sbjct: 5 FKTFAAVGALIGSLALVGCGPDEKDPNHIKVGVIVGAEQQV-AEVAQKVAKDKYGLDVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V +L ID P L++ + + A Y +
Sbjct: 64 VTFNDYVLPNEALSKGDIDANAFQHKPYLDQQLKDRGYKLVAVGNTFVYPIAGYSKKIKS 123
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ + + + G ++ + + ++E +
Sbjct: 124 LDELPNGSQVAVPNDPTNLGRSLLLLQKVG------LIKLKDGVGLLPTVLDVVENPKNL 177
Query: 179 SFSQIR-----RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
++ R + + + + S + + G + V +V +
Sbjct: 178 KIVELEAPQLPRSLDDAQIELAVINTTYA--SQIGLTPAKDGIFVEDKESPYVNLIVTRE 235
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
N+ + ++ + E + N +
Sbjct: 236 DNKDAENVKKFVQAYQ--SDEVYEAANKVFNGG-----AVKGW 271
>gi|77461635|ref|YP_351142.1| ABC transporter, substrate-binding protein, aliphatic sulphonates
[Pseudomonas fluorescens Pf0-1]
gi|77385638|gb|ABA77151.1| putative aliphatic sulfonates ABC transport system,
substrate-binding protein [Pseudomonas fluorescens
Pf0-1]
Length = 326
Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 28/293 (9%), Positives = 67/293 (22%), Gaps = 48/293 (16%)
Query: 1 MYKIL---AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL---G 54
M + + A +R + + LE+ L G
Sbjct: 1 MRTVFLRRGLVALFAAAVSFGAITQAQAETLRIGYQKYGTLVLLK--AKGTLEKRLAAQG 58
Query: 55 YKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
P L ID + P A + + E
Sbjct: 59 VDVQWTEFPGGPQLLEGLNVGSIDFGVTGETP---PVFAQAAGADLLYVAYEPPAPNSEA 115
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+ V K +L K + G+ + ++ + + + +
Sbjct: 116 ILVPKDSP----------IKSVADLKGKKVALNKGSNVHYLLVRALEDAGLKYSDIQTVF 165
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+ R ++ W+P+ ++ + + G + + +
Sbjct: 166 LPP----ADARAAFERGSVDAWVIWDPYQAAAEKQLQAHTLRDGK-GIVDNHQFYLATKP 220
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKN 286
Y K P + + L + + +P+ +
Sbjct: 221 YAQKNPEVIKTL---------------------VEEVRAVGEWSKANPEDVTQ 252
>gi|301111298|ref|XP_002904728.1| transmembrane protein, putative [Phytophthora infestans T30-4]
gi|262095058|gb|EEY53110.1| transmembrane protein, putative [Phytophthora infestans T30-4]
Length = 640
Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 18/136 (13%), Positives = 35/136 (25%), Gaps = 31/136 (22%)
Query: 185 RDQRNNIPAVFLSWEP------HPINSDLNIHYLPGGE----EISGFGEASVYTVVRSDY 234
++ P +F+ WEP H D E +GE +
Sbjct: 145 DAAQSGTPVIFIHWEPEIFHVTHKGLFDRIFLPRTDPERIKSSTGDYGENGYGKKTNNPI 204
Query: 235 LDKCPN---------------ISRLLKNIKFSVALENEMM---KLILNNKQDRQ---FVG 273
PN L + + + N +M + +N +
Sbjct: 205 DVDYPNLQPIKLDAAVVKNQPAGSLFSKLTIADSDINSVMSEYVAVSSNSAEPSPYFRAA 264
Query: 274 RTMLRTHPDLLKNWLI 289
++ + D W+
Sbjct: 265 CNWVKANYDTWSEWVD 280
>gi|50084755|ref|YP_046265.1| sulfate ester binding protein [Acinetobacter sp. ADP1]
gi|49530731|emb|CAG68443.1| sulfate ester binding protein (ABC superfamily, peri_bind)
[Acinetobacter sp. ADP1]
Length = 359
Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 47/276 (17%), Positives = 86/276 (31%), Gaps = 42/276 (15%)
Query: 1 MY-KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIA--ATTAMTSVI-----LEEI 52
M I + L+ + +A A+S +R T A + V+ LE+
Sbjct: 5 MKPSIFKKLILLSLLAFGHASYAESLKTIRIGSPDLTAGQKHAGGGVVDVLYNKKWLEQE 64
Query: 53 L---GYKTNIKL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL 107
L K A P +L N +D P I +L+
Sbjct: 65 LAKKNVKVEWHFFKGAGPAINEALANNQLDFAFLGDLP----PIIGKANGLDTQLLVPTA 120
Query: 108 QGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
+G LAV K EL K G+ G + +N+ L
Sbjct: 121 RGITNYLAVRSDLP----------IKNFAELKGKRVGLLRGTADELSFVSALNSQGLKLS 170
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG---EEISGFGEA 224
R++ F+ + SW P + + H + +++G G
Sbjct: 171 DVRVVNLD----FNAVNAALAAKKIDA--SWGPSRFFALRDKHIVNLPISSRQLNGAGST 224
Query: 225 SVYTVVRSDYLDKCPN-----ISRLLKNIKF-SVAL 254
+ R ++ + PN +++++K + + S
Sbjct: 225 QGVFLGRQSFIRQHPNETQQVVTQVVKGLNWLSNEQ 260
>gi|261211652|ref|ZP_05925939.1| ABC-type tungstate transport system binding protein [Vibrio sp.
RC341]
gi|260839002|gb|EEX65634.1| ABC-type tungstate transport system binding protein [Vibrio sp.
RC341]
Length = 271
Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 31/273 (11%), Positives = 75/273 (27%), Gaps = 17/273 (6%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYKT 57
M K + +SY+ + T +R A T + + +L E+ GYK
Sbjct: 1 MKKTTFTLAAASLILVSYSASSADDTRIRLAT---TTSTYDSGLLDYLLPKFEQDTGYKV 57
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
++ + +N +D+ M + + F+ KL+ +
Sbjct: 58 DVIATGTGKALKMGENGDVDLVMTHAPKAEASFVEAGFGVLPRKLMYNDFVVVGPESDPA 117
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL--DMINNNKFSLKGFRLIEAS 175
+ I + + ++ I + I N +
Sbjct: 118 KIADEKNIAKVFENIAKSGAVFISRGDDSGTHKKELGIWAQNKIEPNFGGYRSIGQGMGP 177
Query: 176 ELASFSQIRRD-QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDY 234
L S+++ + + + + + F V V Y
Sbjct: 178 TLNMASEMQAYTLTDRGTWLAYNNKLDLKVLFEG--------DEQLFNPYQVIIVNPERY 229
Query: 235 LDKCPNISRLLKNIKFSVALENEMMKLILNNKQ 267
+++ + + + + +N +Q
Sbjct: 230 PTTQYQAAKVFSDWLVNPKGQQLINDYKVNGQQ 262
>gi|261340958|ref|ZP_05968816.1| taurine ABC transporter, periplasmic binding protein [Enterobacter
cancerogenus ATCC 35316]
gi|288316819|gb|EFC55757.1| taurine ABC transporter, periplasmic binding protein [Enterobacter
cancerogenus ATCC 35316]
Length = 320
Score = 48.3 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 28/247 (11%), Positives = 63/247 (25%), Gaps = 22/247 (8%)
Query: 10 FLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTF 68
+++ V A + A + G K + K +
Sbjct: 7 ITLLGALALWAFQAQAVEVTVAYQTSAEPAKVAQ-ADNTFAKESGAKVDWRKFDSGAAIV 65
Query: 69 RSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSY 128
R+L + + I P E + + G L V
Sbjct: 66 RALASGDVQIGNLGSSPLAVAASQQVPME---VFLLASQLGNSEALVVKKTITKP----- 117
Query: 129 QDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQR 188
++L K + + + +L + + +++ I +
Sbjct: 118 -------EDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVQILNLQPP----AIIAAWQ 166
Query: 189 NNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKN 247
W P + + L ++ +G ++ VVR D+ +K P + +
Sbjct: 167 RGDIDGAYVWAPAVNELEKDGTVLTDSAKVGEWGAPTLDVWVVRKDFAEKHPEVVKAFAK 226
Query: 248 IKFSVAL 254
Sbjct: 227 SALDAQQ 233
>gi|320174744|gb|EFW49874.1| Taurine-binding periplasmic protein TauA [Shigella dysenteriae CDC
74-1112]
Length = 256
Score = 48.3 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 1/74 (1%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I + W P + + L E++ +G ++ VVR D+ +K P
Sbjct: 96 AIIAAWQRGDIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPE 155
Query: 241 ISRLLKNIKFSVAL 254
+ +
Sbjct: 156 VVKAFAKSAIDAQQ 169
>gi|152972534|ref|YP_001337680.1| cytoplasmic membrane lipoprotein-28 [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|150957383|gb|ABR79413.1| putative lipoprotein [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
Length = 269
Score = 48.3 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 22/249 (8%), Positives = 60/249 (24%), Gaps = 7/249 (2%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL 62
+ A + + + + ++ + + + +E G + +
Sbjct: 6 RAAAAVMLAGLALVGCDQKGNEAKHIKVGVINGAEQDV-AEVAKKVAKEKYGLEVELVGF 64
Query: 63 AVPVTFRSLKN-KGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ + N +D + P LE+ + A Y + V
Sbjct: 65 SGSLLPNESTNAGDLDANVFQHRPFLEQDNKAHNYHLVAVGNTFVFPMAGYSRKIKSVAE 124
Query: 122 ALGIKSYQDIAKYKKELGAKIYGI-EPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ A + E + + L
Sbjct: 125 LKDGATIAIPNDPTNLGRALLLLQKEELITLKAGTGLLPTAVDITDNPHNLKIMELEG-- 182
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+Q+ R + V + + + + G I V +V + N
Sbjct: 183 AQLPRVLDDPKVDVAIISTTY--LQQTGLSPVRDGIFIEDKNSPYVNIIVTREDNKDAQN 240
Query: 241 ISRLLKNIK 249
+ +++ +
Sbjct: 241 VKEFMQSYQ 249
>gi|110804388|ref|YP_687908.1| taurine transport system periplasmic protein [Shigella flexneri 5
str. 8401]
gi|110613936|gb|ABF02603.1| taurine transport system periplasmic protein [Shigella flexneri 5
str. 8401]
Length = 256
Score = 48.3 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 1/74 (1%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I + W P + + L E++ +G ++ VVR D+ +K P
Sbjct: 96 AIIAAWQRGDIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPE 155
Query: 241 ISRLLKNIKFSVAL 254
+ +
Sbjct: 156 VVKAFAKSAIDAQQ 169
>gi|322831617|ref|YP_004211644.1| lipoprotein, YaeC family [Rahnella sp. Y9602]
gi|321166818|gb|ADW72517.1| lipoprotein, YaeC family [Rahnella sp. Y9602]
Length = 271
Score = 48.3 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 33/286 (11%), Positives = 74/286 (25%), Gaps = 30/286 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K +AV L P ++ ++ + + +E G +
Sbjct: 5 FKSIAVVGALLGSLALVGCGPKEQDPNHIKVGVIVGSEQQV-AEVAQKVAKEKYGLDVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V +L ID+ F + IK L
Sbjct: 64 VTFNDYVLPNEALSKGDIDV---------NAFQHKPYLDQQIKDRGYKLVPVGNTFVYPI 114
Query: 119 VGFALGIKSYQDIAKYKKEL---GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
G++ IKS ++ + G Q ++ + + + E
Sbjct: 115 AGYSKKIKSIDELKDGDQVALPNDPTNLGRSLLLLQKQGLIKLKDGVGLLPTVLDVTENP 174
Query: 176 ELASFSQIR-----RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
+ ++ R + A+ + + S +N+ G + V +V
Sbjct: 175 KNLKLVELEAPQLPRSLDDAKIALAVINTTYA--SQINLTPEKDGIFVEDKESPYVNLIV 232
Query: 231 RSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
+ N+ + ++ + N I N +
Sbjct: 233 AREDNKDAENVKKFVQAYQ--SDEVNAAANKIFNGG-----AVKGW 271
>gi|194428828|ref|ZP_03061363.1| taurine ABC transporter, periplasmic taurine-binding protein
[Escherichia coli B171]
gi|194413131|gb|EDX29418.1| taurine ABC transporter, periplasmic taurine-binding protein
[Escherichia coli B171]
gi|323160388|gb|EFZ46337.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli E128010]
Length = 317
Score = 48.3 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 29/244 (11%), Positives = 65/244 (26%), Gaps = 23/244 (9%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSL 71
++++ V A + A + +E + + K + R+L
Sbjct: 9 LLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQADNTFAKESVDW---RKFDSGASIVRAL 65
Query: 72 KNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDI 131
+ + I P E + + G L V
Sbjct: 66 ASGDVQIGNLGSSPLAVAASQQVPIE---VFLLASKLGNSEALVVKKTISKP-------- 114
Query: 132 AKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNI 191
++L K + + + +L + + ++ I +
Sbjct: 115 ----EDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNLQPP----AIIAAWQRGD 166
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKNIKF 250
W P + + L E++ +G ++ VVR DY +K P + +
Sbjct: 167 IDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDYAEKHPEVVKAFAKSAI 226
Query: 251 SVAL 254
Sbjct: 227 DAQQ 230
>gi|325291598|ref|YP_004277462.1| ABC transporter substrate-binding protein [Agrobacterium sp. H13-3]
gi|325059451|gb|ADY63142.1| ABC transporter, substrate binding protein [Agrobacterium sp.
H13-3]
Length = 313
Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 41/278 (14%), Positives = 76/278 (27%), Gaps = 23/278 (8%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K + T S + A + T V +GWT A T + E G K +IK
Sbjct: 1 MKKTWVIAAIATLVSSASAY---AETSVTIGMSGWTGFAPLTLAKQAGIFEKNGLKVDIK 57
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ +L + I + N + + ++
Sbjct: 58 KIPQASRHLALASGDIQCAATTVETWIA--------------WNANGVKSTQIFQMDKSH 103
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
A GI D+AK G + PG + ++ N +LK +++
Sbjct: 104 GADGIAVRSDVAKVSDLKGKTVAASAPGTSPYFFLAWILKENGLTLKDVKVVNLEPGP-- 161
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ +++EP+ + D+L P
Sbjct: 162 --AAQAFVAGQNEAAMTYEPYLSTVRAAPDKGKILATTLDYPAVMDTFGCTPDFLKANPQ 219
Query: 241 ISRLLKNIKFSVALENEMMKLILNN--KQDRQFVGRTM 276
++ L + F + D + G
Sbjct: 220 AAKALADSYFQALELIKTDPAKSYETMGADVKQAGEAF 257
>gi|49087462|gb|AAT51461.1| PA3938 [synthetic construct]
Length = 338
Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 29/268 (10%), Positives = 69/268 (25%), Gaps = 21/268 (7%)
Query: 10 FLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTF 68
+ + + A + D + E+ +G K + + + P
Sbjct: 10 LVAALAFASLSVAAQAADITVGYQTGIDPTKVPQ-ADGLYEKAIGEKIDWRRFNSGPEVI 68
Query: 69 RSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSY 128
+L + + + P I N +
Sbjct: 69 AALASGDLQLGNIGSSPLAAATSRKLPIVAFIVSAQIN-------------AAEALVVRN 115
Query: 129 QDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQR 188
++L K + + +L + + + +++ + ++I R
Sbjct: 116 GSGIGKPEDLVGKTIATPFVSTSHYSLLGALKHWQIDPSKVKIVNLNP----AEIAAAWR 171
Query: 189 NNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEAS-VYTVVRSDYLDKCPNISRLLKN 247
W P + L E+ +G + V R D+ +K P I
Sbjct: 172 RGDIDGAFVWSPALGEIKKSGKVLTDAAEVGQWGAPTFEVWVARKDFAEKHPEIVARFAR 231
Query: 248 IKFSV-ALENEMMKLILNNKQDRQFVGR 274
+ A N + + + + R
Sbjct: 232 VSLDSFADYNAHKAEWTTDSEPVKKIAR 259
>gi|293394738|ref|ZP_06639030.1| D-methionine ABC superfamily ATP binding cassette transporter,
binding protein [Serratia odorifera DSM 4582]
gi|291422864|gb|EFE96101.1| D-methionine ABC superfamily ATP binding cassette transporter,
binding protein [Serratia odorifera DSM 4582]
Length = 271
Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 28/284 (9%), Positives = 75/284 (26%), Gaps = 25/284 (8%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTN 58
+ I A+ + T +++ D P ++ + + + +E G
Sbjct: 5 LKSIAAIGALIGTLALTGCGQ-DEKDPNHIKVGVIVGAEQQV-AEVAQKVAKEKYGLDVE 62
Query: 59 IKLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+ V +L ID+ P L++ I + A Y +
Sbjct: 63 LVTFNDYVLPNEALSKGDIDLNAFQHKPYLDQQIKDRGYKLVSVGSTFVYPIAGYSKKIK 122
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
+ + + + ++ + + + E +
Sbjct: 123 SLSELQPGSQIALPNDPTNLGRSLLLL------QQEGLIKLKDGVGLLPTVLDVTENPKN 176
Query: 178 ASFSQIR-----RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRS 232
++ R + A+ + + S + + G + G V +V
Sbjct: 177 LKLVELEAPQLPRSLDDQQIALAIINTTYA--SQIGLTPAKDGLFVEGKESPYVNLLVSR 234
Query: 233 DYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
+ N+ + ++ + N+ I N +
Sbjct: 235 EDNKDAENVKKFVQAYQ--SDEVNDAANKIFNGG-----AVKGW 271
>gi|213585790|ref|ZP_03367616.1| putative periplasmic protein [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
Length = 136
Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 25/133 (18%), Positives = 37/133 (27%), Gaps = 10/133 (7%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--N 58
+ K+ L L + A PV T+ A M +LE G KT
Sbjct: 3 ISKLWVSSLALLATVSLPLQAAS---PVTVGSKIDTEGALLGNMILQVLESH-GVKTVNK 58
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAE----NLQGAKYML 114
I+L PV ++ +DI+ Y F L + L
Sbjct: 59 IQLGTTPVVRGAITAGELDIYPEYTGNGAFFFKDENDPAWKNAKQGFEKVKKLDAEQNKL 118
Query: 115 AVNDVGFALGIKS 127
A +
Sbjct: 119 VWLTPAPANNTWT 131
>gi|262171457|ref|ZP_06039135.1| ABC-type tungstate transport system binding protein [Vibrio mimicus
MB-451]
gi|261892533|gb|EEY38519.1| ABC-type tungstate transport system binding protein [Vibrio mimicus
MB-451]
Length = 271
Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 31/273 (11%), Positives = 75/273 (27%), Gaps = 17/273 (6%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYKT 57
M K + +SY+ + T +R A T + + +L E+ GYK
Sbjct: 1 MKKTTFTLAAASLILVSYSASSADETRIRLAT---TTSTYDSGLLDYLLPSFEQETGYKV 57
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
++ + +N +D+ M + + F+ KL+ +
Sbjct: 58 DVIATGTGKALKMGENGDVDLVMTHAPKAEASFVEAGYGVLPRKLMYNDFVVVGPKNDPA 117
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL--DMINNNKFSLKGFRLIEAS 175
+ I + + ++ I + I N +
Sbjct: 118 KIADEKSIAKVFENIAKSGAVFISRGDDSGTHKKELGIWAQNKIEPNFGGYRSIGQGMGP 177
Query: 176 ELASFSQIRRD-QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDY 234
L S+++ + + + + + F V V Y
Sbjct: 178 TLNMASEMQAYTLTDRGTWLAYNNKLDLKVLFEG--------DEQLFNPYQVIIVNPERY 229
Query: 235 LDKCPNISRLLKNIKFSVALENEMMKLILNNKQ 267
+++ + + + + +N +Q
Sbjct: 230 PTTQYQAAKVFSDWLVNPKGQQLINDYKVNGQQ 262
>gi|15887512|ref|NP_353193.1| ABC transporter, substrate binding protein [Agrobacterium
tumefaciens str. C58]
gi|15155039|gb|AAK85978.1| ABC transporter, substrate binding protein [Agrobacterium
tumefaciens str. C58]
Length = 333
Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 35/245 (14%), Positives = 69/245 (28%), Gaps = 21/245 (8%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M + + T S + A + V +GWT A T + E G K +IK
Sbjct: 21 MKRTWVIAAIATLVSSASAYAETA---VTIGMSGWTGFAPLTLAKQAGIFEKNGLKVDIK 77
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ +L + I + N + + ++
Sbjct: 78 KIPQASRHLALASGDIQCAATTVETWIA--------------WNANGVKSTQIFQMDKSH 123
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
A GI D++K G + PG + ++ N +LK +++
Sbjct: 124 GADGIAVRSDVSKVADLKGKTVAASAPGTSPYFFLAWILKENGLTLKDVKVVNLEPGP-- 181
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ +++EP+ + D+L P
Sbjct: 182 --AAQAFVAGQNDAAMTYEPYLSTVRAAPDKGKILATTLDYPAVMDTFGCTPDFLKANPQ 239
Query: 241 ISRLL 245
++ L
Sbjct: 240 AAKAL 244
>gi|146310499|ref|YP_001175573.1| taurine transporter substrate binding subunit [Enterobacter sp.
638]
gi|145317375|gb|ABP59522.1| taurine ABC transporter, periplasmic binding protein [Enterobacter
sp. 638]
Length = 320
Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 30/247 (12%), Positives = 66/247 (26%), Gaps = 22/247 (8%)
Query: 10 FLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTF 68
+++ V A + A +E G K + K +
Sbjct: 7 ITLLGALALWAFQAQAVDVTVAYQTSAEPAKVAQADGTFAKES-GAKVDWRKFDSGASIV 65
Query: 69 RSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSY 128
R+L + + I P E + + G L V
Sbjct: 66 RALASGDVQIGNLGSSPLAVAASQQVPIE---VFLLASQLGNSEALVVKKGITKP----- 117
Query: 129 QDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQR 188
++L K + + + +L + + ++ I +
Sbjct: 118 -------EDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEILNLQPP----AIIAAWQ 166
Query: 189 NNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKN 247
W P + + L E+++ +G ++ VVR D+ +K P++ +
Sbjct: 167 RGDIDGAYVWAPAVNALEKDGTVLTDSEKVAEWGAPTLDVWVVRKDFAEKHPDVVKAFAK 226
Query: 248 IKFSVAL 254
Sbjct: 227 SAIDAQQ 233
>gi|258624565|ref|ZP_05719503.1| ABC-type tungstate transport system, permease component [Vibrio
mimicus VM603]
gi|258583112|gb|EEW07923.1| ABC-type tungstate transport system, permease component [Vibrio
mimicus VM603]
Length = 271
Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 31/273 (11%), Positives = 75/273 (27%), Gaps = 17/273 (6%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYKT 57
M K + +SY+ + T +R A T + + +L E+ GYK
Sbjct: 1 MKKTTFTLAAASLILVSYSASSADETRIRLAT---TTSTYDSGLLDYLLPTFEQETGYKV 57
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
++ + +N +D+ M + + F+ KL+ +
Sbjct: 58 DVIATGTGKALKMGENGDVDLVMTHAPKAEASFVEAGYGVLPRKLMYNDFVVVGPKNDPA 117
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL--DMINNNKFSLKGFRLIEAS 175
+ I + + ++ I + I N +
Sbjct: 118 KIADEKSIAKVFENIAKSGAVFISRGDDSGTHKKELGIWAQNKIEPNFGGYRSIGQGMGP 177
Query: 176 ELASFSQIRRD-QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDY 234
L S+++ + + + + + F V V Y
Sbjct: 178 TLNMASEMQAYTLTDRGTWLAYNNKLDLKVLFEG--------DEQLFNPYQVIIVNPERY 229
Query: 235 LDKCPNISRLLKNIKFSVALENEMMKLILNNKQ 267
+++ + + + + +N +Q
Sbjct: 230 PTTQYQAAKVFSDWLVNPKGQQLINDYKVNGQQ 262
>gi|301049558|ref|ZP_07196512.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli MS 185-1]
gi|300298649|gb|EFJ55034.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli MS 185-1]
Length = 216
Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 1/74 (1%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I + W P + + L E++ +G ++ VVR D+ +K P
Sbjct: 56 AIIAAWQRGDIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPE 115
Query: 241 ISRLLKNIKFSVAL 254
+ +
Sbjct: 116 VVKAFAKSAIDAQQ 129
>gi|157146317|ref|YP_001453636.1| hypothetical protein CKO_02075 [Citrobacter koseri ATCC BAA-895]
gi|157083522|gb|ABV13200.1| hypothetical protein CKO_02075 [Citrobacter koseri ATCC BAA-895]
Length = 335
Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 35/277 (12%), Positives = 75/277 (27%), Gaps = 33/277 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-I 59
M K L V L A++ VR A +G + + L+ L K +
Sbjct: 1 MKKSLCVLLAAGGL-WVNTSVAETPAEVRVAYSGGSQVLMLAKADGS-LDNALHSKVKWV 58
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ + + IDI P+ + +++V + A Y +
Sbjct: 59 QFASGADALNYFASNAIDIANFGSSPATAGIVRKLP----VEIVGVSGVIASYERLIGKD 114
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
G ++ K P + + I+ N L+
Sbjct: 115 G-----------ITRINDIEGKRVAYPPNSTAQYALEAAISVNHLDRSKITLLPL----R 159
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY--TVVRSDYLDK 237
+++ + W P + + + + +Y VVR + ++
Sbjct: 160 PAEMVAAWKRGDIDAGYVWAPFAQELEASGGHQVFATKDLQKDGYLIYNNYVVRKAFAEQ 219
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGR 274
P + + + K+D +
Sbjct: 220 YPQTVSAFLRVH---------QEKVDEFKKDPERAAA 247
>gi|332341728|gb|AEE55062.1| taurine transporter protein subunit TauA [Escherichia coli UMNK88]
Length = 230
Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 1/74 (1%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I + W P + + L E++ +G ++ VVR D+ +K P
Sbjct: 70 AIIAAWQRGDIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPE 129
Query: 241 ISRLLKNIKFSVAL 254
+ +
Sbjct: 130 VVKAFAKSAIDAQQ 143
>gi|188532562|ref|YP_001906359.1| Lipoprotein 28 precursor [Erwinia tasmaniensis Et1/99]
gi|188027604|emb|CAO95454.1| Lipoprotein 28 precursor [Erwinia tasmaniensis Et1/99]
Length = 271
Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 23/272 (8%), Positives = 55/272 (20%), Gaps = 21/272 (7%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
+ A L L + + ++ + + + +E G + +
Sbjct: 9 VTAALLMLGSLLAGCDNKNANAYAIKVGVINGAEQDV-AEVAKKVAKEKYGLDVELVGFS 67
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+ + E K +L G++
Sbjct: 68 GSLL-----PNEPTAHGDLDANVFQ---HRPFLEQDNKAKGTSLVAVGNTFVFPIAGYSK 119
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK--------FSLKGFRLIEAS 175
IK ++ +I +
Sbjct: 120 KIKRISELKDGDTLAIPNDPTNLGRALLLLNKEKLIALKPNTGLLPTALDITANPRRLKI 179
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYL 235
+Q+ R + V + + + LN E V +V
Sbjct: 180 IEIEAAQLPRALDDAQVTVAIINTTYIQQTGLNPVRDSVFIEDKQSP--YVNIIVTRADN 237
Query: 236 DKCPNISRLLKNIKFSVALENEMMKLILNNKQ 267
N+ ++ + + I N
Sbjct: 238 KDAANVHDFIRAYQ--SPEVAAAAEKIFNGGA 267
>gi|229514929|ref|ZP_04404389.1| ABC-type tungstate transport system binding protein [Vibrio
cholerae TMA 21]
gi|229347634|gb|EEO12593.1| ABC-type tungstate transport system binding protein [Vibrio
cholerae TMA 21]
Length = 275
Score = 47.5 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 31/273 (11%), Positives = 75/273 (27%), Gaps = 17/273 (6%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYKT 57
M K + +SY+ + T +R A T + + +L E+ GYK
Sbjct: 5 MKKTTFTLAAASLILVSYSASSADDTRIRLAT---TTSTYDSGLLDYLLPKFEQDTGYKV 61
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
++ + +N +D+ M + + F+ KL+ +
Sbjct: 62 DVIATGTGKALKMGENGDVDLVMTHAPKAEASFVEAGYGVLPRKLMYNDFVVVGPESDPA 121
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL--DMINNNKFSLKGFRLIEAS 175
+ I + + ++ I + I N +
Sbjct: 122 KIADEKSIAKVFENIAKSGAVFISRGDDSGTHKKELGIWAQNKIEPNFGGYRSIGQGMGP 181
Query: 176 ELASFSQIRRD-QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDY 234
L S+++ + + + + + F V V Y
Sbjct: 182 TLNMASEMQAYTLTDRGTWLAYNNKLDLKVLFEG--------DEQLFNPYQVIIVNPERY 233
Query: 235 LDKCPNISRLLKNIKFSVALENEMMKLILNNKQ 267
+++ + + + + +N +Q
Sbjct: 234 PTTQYQAAKVFSDWLVNPKGQQLINDYKVNGQQ 266
>gi|291298561|ref|YP_003509839.1| Substrate-binding region of ABC-type glycine betaine transporter
[Stackebrandtia nassauensis DSM 44728]
gi|290567781|gb|ADD40746.1| Substrate-binding region of ABC-type glycine betaine transport
system [Stackebrandtia nassauensis DSM 44728]
Length = 339
Score = 47.5 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 22/208 (10%), Positives = 55/208 (26%), Gaps = 32/208 (15%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTF-RSLKNKGIDIFMGYW 83
+ +T+ + ++ LE GY T +K + T+ +L++ + Y
Sbjct: 132 SGSLVVGHANYTESEIVANLYAIALEGA-GYTTELKDVGNRETYLPALEDNDFQVIPEYA 190
Query: 84 YPSLE------------------------KFIAPYLEEGSIKLVAENLQGAKYMLAVND- 118
E + P+ ++ + L ++ V
Sbjct: 191 ASLTETLNPDPDADSAKNPIADNDIDKTLDTLKPFAKDAGLALSEPAEAASQNAYVVTKA 250
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
G+K+ D A + + G + + + F ++
Sbjct: 251 FAKEHGVKTLSDFADKCSGKASSLAGPPECPKRLYCEVGLKETYGIQFGTFNSLDLGTGT 310
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSD 206
++ + V +D
Sbjct: 311 -----KQSVASGDSTVGTVTTTDSALAD 333
Score = 37.5 bits (85), Expect = 2.6, Method: Composition-based stats.
Identities = 4/68 (5%), Positives = 19/68 (27%), Gaps = 4/68 (5%)
Query: 216 EEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFSVALENEMMKLILNNKQDRQFVG 273
++ ++ D+ + + K + E+ K + +++
Sbjct: 58 DDKKLQASENILAAFNDKAADE--QAIAAVNAVSAKLTTDDLIELNKSVDVDRKSAAKTA 115
Query: 274 RTMLRTHP 281
+ +
Sbjct: 116 KAFAEKNK 123
>gi|260177213|gb|ACX33936.1| hypothetical NMT1/THI5 like family protein [uncultured prokaryote
AT5]
Length = 318
Score = 47.5 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 23/167 (13%), Positives = 50/167 (29%), Gaps = 12/167 (7%)
Query: 113 MLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
LA + + + + +L K G G + ++ L+
Sbjct: 93 FLARTEYSYIKTLTATAAEIHKPADLKGKRIAFTAGTGGEVYTVQLLKAAGLGKDDVTLV 152
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRS 232
+ + + +WEPH N + + G + V+
Sbjct: 153 NLRPQDMVA----ALASGSIDAYGTWEPHIFNGIKALGSKVTPLDTKGIYAETFNIVLTQ 208
Query: 233 DYLDKCPNISR-LLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLR 278
DYL K P +++ L+ + E + N++ V ++
Sbjct: 209 DYLQKKPEVAKNFLRALV-------EAEVWMKANREQAINVVAEFVK 248
>gi|333008551|gb|EGK28019.1| taurine ABC transporter, periplasmic binding protein [Shigella
flexneri VA-6]
Length = 298
Score = 47.5 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 1/74 (1%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I + W P + + L E++ +G ++ VVR D+ +K P
Sbjct: 138 AIIAAWQRGDIDGAYVWAPAVNALEKDDKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPE 197
Query: 241 ISRLLKNIKFSVAL 254
+ +
Sbjct: 198 VVKAFAKSAIDAQQ 211
>gi|258622890|ref|ZP_05717906.1| conserved hypothetical protein [Vibrio mimicus VM573]
gi|258584829|gb|EEW09562.1| conserved hypothetical protein [Vibrio mimicus VM573]
Length = 285
Score = 47.5 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 31/273 (11%), Positives = 75/273 (27%), Gaps = 17/273 (6%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYKT 57
M K + +SY+ + T +R A T + + +L E+ GYK
Sbjct: 15 MKKTTFTLAAASLILVSYSASSADETRIRLAT---TTSTYDSGLLDYLLPTFEQETGYKV 71
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
++ + +N +D+ M + + F+ KL+ +
Sbjct: 72 DVIATGTGKALKMGENGDVDLVMTHAPKAEASFVEAGYGVLPRKLMYNDFVVVGPKNDPA 131
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL--DMINNNKFSLKGFRLIEAS 175
+ I + + ++ I + I N +
Sbjct: 132 KIADEKSIAKVFENIAKSGAVFISRGDDSGTHKKELGIWAQNKIEPNFGGYRSIGQGMGP 191
Query: 176 ELASFSQIRRD-QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDY 234
L S+++ + + + + + F V V Y
Sbjct: 192 TLNMASEMQAYTLTDRGTWLAYNNKLDLKVLFEG--------DEQLFNPYQVIIVNPERY 243
Query: 235 LDKCPNISRLLKNIKFSVALENEMMKLILNNKQ 267
+++ + + + + +N +Q
Sbjct: 244 PTTQYQAAKVFSDWLVNPKGQQLINDYKVNGQQ 276
>gi|229529436|ref|ZP_04418826.1| ABC-type tungstate transport system binding protein [Vibrio
cholerae 12129(1)]
gi|229333210|gb|EEN98696.1| ABC-type tungstate transport system binding protein [Vibrio
cholerae 12129(1)]
Length = 275
Score = 47.5 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 31/273 (11%), Positives = 74/273 (27%), Gaps = 17/273 (6%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYKT 57
M K + +SY+ + T +R A T + + +L E+ GYK
Sbjct: 5 MKKTTFTLAAASLILVSYSASSADDTRIRLAT---TTSTYDSGLLDYLLPKFEQDTGYKV 61
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+ + +N +D+ M + + F+ KL+ +
Sbjct: 62 EVIATGTGKALKMGENGDVDLVMTHAPKAEASFVEAGFGVLPRKLMYNDFVVVGPESDPA 121
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL--DMINNNKFSLKGFRLIEAS 175
+ I + + ++ I + I N +
Sbjct: 122 KIADEKNIAKVFENIAKSGAVFISRGDDSGTHKKELGIWAQNKIEPNFGGYRSIGQGMGP 181
Query: 176 ELASFSQIRRD-QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDY 234
L S+++ + + + + + F V V Y
Sbjct: 182 TLNMASEMQAYTLTDRGTWLAYNNKLALKILFEG--------DEQLFNPYQVIIVNPERY 233
Query: 235 LDKCPNISRLLKNIKFSVALENEMMKLILNNKQ 267
+++ + + + + +N +Q
Sbjct: 234 PTTQYQAAKVFSDWLVNPKGQQLINDYKVNGQQ 266
>gi|296101487|ref|YP_003611633.1| sulfonate/nitrate/taurine transport system substrate-binding
protein [Enterobacter cloacae subsp. cloacae ATCC 13047]
gi|295055946|gb|ADF60684.1| sulfonate/nitrate/taurine transport system substrate-binding
protein [Enterobacter cloacae subsp. cloacae ATCC 13047]
Length = 320
Score = 47.5 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 1/74 (1%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I + W P + + L E++ +G ++ VVR D+ +K P
Sbjct: 160 AIIAAWQRGDIDGAYVWAPAVNELEKDGTVLTDSEKVGQWGAPTLDVWVVRKDFAEKHPE 219
Query: 241 ISRLLKNIKFSVAL 254
+ +
Sbjct: 220 VVKAFAKSAIDAQQ 233
>gi|332761726|gb|EGJ92005.1| taurine ABC transporter, periplasmic binding protein [Shigella
flexneri 2747-71]
gi|333008703|gb|EGK28167.1| taurine ABC transporter, periplasmic binding protein [Shigella
flexneri K-218]
gi|333022125|gb|EGK41368.1| taurine ABC transporter, periplasmic binding protein [Shigella
flexneri K-304]
Length = 294
Score = 47.5 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 1/74 (1%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I + W P + + L E++ +G ++ VVR D+ +K P
Sbjct: 134 AIIAAWQRGDIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPE 193
Query: 241 ISRLLKNIKFSVAL 254
+ +
Sbjct: 194 VVKAFAKSAIDAQQ 207
>gi|329997057|ref|ZP_08302684.1| D-methionine-binding lipoprotein MetQ [Klebsiella sp. MS 92-3]
gi|328539172|gb|EGF65203.1| D-methionine-binding lipoprotein MetQ [Klebsiella sp. MS 92-3]
Length = 279
Score = 47.5 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 21/249 (8%), Positives = 60/249 (24%), Gaps = 7/249 (2%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL 62
+ A + + + + ++ + + + +E G + +
Sbjct: 16 RAAAAVMLAGLALVGCDQKGNEAKHIKVGVINGAEQDV-AEVAKKVAKEKYGLEVELVGF 74
Query: 63 AVPVTFRSLKN-KGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ + N +D + P LE+ + A Y + V
Sbjct: 75 SGSLLPNESTNAGDLDANVFQHRPFLEQDNKAHNYHLVAVGNTFVFPMAGYSRKIKSVAE 134
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPG-NEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ A + + + + L
Sbjct: 135 LKDGATIAIPNDPTNLGRALLLLQKEKLITLKAGTGLLPTAVDITDNPHNLKIMELEG-- 192
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+Q+ R + V + + + + G I V +V + N
Sbjct: 193 AQLPRVLDDPKVDVAIISTTY--LQQTGLSPVRDGIFIEDKNSPYVNIIVTREDNKDAQN 250
Query: 241 ISRLLKNIK 249
+ +++ +
Sbjct: 251 VKEFMQSYQ 259
>gi|24111697|ref|NP_706207.1| taurine transporter substrate binding subunit [Shigella flexneri 2a
str. 301]
gi|30061822|ref|NP_835993.1| taurine transporter substrate binding subunit [Shigella flexneri 2a
str. 2457T]
gi|24050474|gb|AAN41914.1| taurine transport system periplasmic protein [Shigella flexneri 2a
str. 301]
gi|30040064|gb|AAP15798.1| taurine transport system periplasmic protein [Shigella flexneri 2a
str. 2457T]
gi|281599615|gb|ADA72599.1| Taurine transport system periplasmic protein [Shigella flexneri
2002017]
gi|313646666|gb|EFS11125.1| taurine ABC transporter, periplasmic binding protein [Shigella
flexneri 2a str. 2457T]
gi|332761615|gb|EGJ91895.1| taurine ABC transporter, periplasmic binding protein [Shigella
flexneri 4343-70]
gi|332764417|gb|EGJ94650.1| taurine ABC transporter, periplasmic binding protein [Shigella
flexneri K-671]
gi|332768550|gb|EGJ98732.1| taurine ABC transporter, periplasmic binding protein [Shigella
flexneri 2930-71]
Length = 298
Score = 47.5 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 1/74 (1%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I + W P + + L E++ +G ++ VVR D+ +K P
Sbjct: 138 AIIAAWQRGDIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPE 197
Query: 241 ISRLLKNIKFSVAL 254
+ +
Sbjct: 198 VVKAFAKSAIDAQQ 211
>gi|157371990|ref|YP_001479979.1| DL-methionine transporter substrate-binding subunit [Serratia
proteamaculans 568]
gi|270264791|ref|ZP_06193055.1| transporter [Serratia odorifera 4Rx13]
gi|157323754|gb|ABV42851.1| lipoprotein, YaeC family [Serratia proteamaculans 568]
gi|270041089|gb|EFA14189.1| transporter [Serratia odorifera 4Rx13]
Length = 271
Score = 47.5 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 33/286 (11%), Positives = 73/286 (25%), Gaps = 30/286 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K +A L + P ++ + + + +E G +
Sbjct: 5 FKSIAAIGALIGTLALAGCGQEEKDPNHIKVGVIVGAEQQV-AEIAQKVAKEKYGLDVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V +L ID+ F + IK L
Sbjct: 64 VTFNDYVLPNEALSKGDIDL---------NAFQHKPYLDQQIKDRGYKLVSVGNSFVYPI 114
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKF-SLKGFRLIEASEL 177
G++ IKS ++ + + + +++I L L
Sbjct: 115 AGYSKKIKSLDELKDGSQVALPNDPTNLGRSLLLLQKVNLIKLKDGVGLLPTVLDVTENP 174
Query: 178 ASF-------SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
+ Q+ R + A+ + + S + + G + V +V
Sbjct: 175 KNLKLVELEAPQLPRSLDDQQIALAVINTTYA--SQIGLTPAKDGLFVEDKDSPYVNLLV 232
Query: 231 RSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
+ N+ + ++ + NE I N +
Sbjct: 233 AREDNKDAENVKKFVQAYQ--SDEVNEAANKIFNGG-----AVKGW 271
>gi|222056437|ref|YP_002538799.1| hypothetical protein Geob_3355 [Geobacter sp. FRC-32]
gi|221565726|gb|ACM21698.1| conserved hypothetical protein [Geobacter sp. FRC-32]
Length = 192
Score = 47.5 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 1/84 (1%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M +++ + +F ++ A + T + M SV++ E G I
Sbjct: 1 MKRLVVLVIFTLLAVMATQARACVGKVLYIGVTNSPNDQLLAEMISVLVTERTGTSVKIL 60
Query: 61 LLAVP-VTFRSLKNKGIDIFMGYW 83
+ ++++ + + +
Sbjct: 61 TFKTGAEIYNAVRHGQVGLIIENT 84
>gi|325122254|gb|ADY81777.1| aryl sulfate ester ABC transporter [Acinetobacter calcoaceticus
PHEA-2]
Length = 355
Score = 47.5 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 45/271 (16%), Positives = 85/271 (31%), Gaps = 41/271 (15%)
Query: 1 MY-KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIA--ATTAMTSVI-----LEEI 52
M I + L+ + +A A+S +R T A + V+ LE+
Sbjct: 1 MKPSIFRKLILLSLLAFGHASYAESIKTIRIGSPDLTAGQKHAGGGVVDVLYNKKWLEQE 60
Query: 53 L---GYKTNIKL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL 107
L K A P +L N +D P I +L+
Sbjct: 61 LAKKNVKVEWHFFKGAGPAINEALANNQLDFAFLGDLP----PIIGKANGLDTQLLVPTA 116
Query: 108 QGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
+G LAV K +L K G+ G + +N+ L
Sbjct: 117 RGITNYLAVRSDLS----------IKNFADLKGKRVGLLRGTADELSFVSALNSQGLKLS 166
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG---EEISGFGEA 224
R++ F+ + SW P + + H + +++G G
Sbjct: 167 DVRVVNLD----FNAVNAALAAKKIDA--SWGPSRFFALRDKHIVNLPISSRQLNGAGST 220
Query: 225 SVYTVVRSDYLDKCPN-----ISRLLKNIKF 250
+ R ++ + PN +++++K + +
Sbjct: 221 QGVFLGRQSFIRQHPNETQQVVTQVVKGLNW 251
>gi|323178376|gb|EFZ63954.1| taurine ABC transporter, periplasmic binding protein [Escherichia
coli 1180]
Length = 298
Score = 47.5 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 1/74 (1%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I + W P + + L E++ +G ++ VVR D+ +K P
Sbjct: 138 AIIAAWQRGDIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPE 197
Query: 241 ISRLLKNIKFSVAL 254
+ +
Sbjct: 198 VVKAFAKSAIDAQQ 211
>gi|238897134|ref|YP_002921880.1| cytoplasmic membrane lipoprotein-28 [Klebsiella pneumoniae
NTUH-K2044]
gi|238549462|dbj|BAH65813.1| putative lipoprotein [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
Length = 300
Score = 47.1 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 21/249 (8%), Positives = 60/249 (24%), Gaps = 7/249 (2%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL 62
+ A + + + + ++ + + + +E G + +
Sbjct: 37 RAAAAVMLAGLALVGCDQKGNEAKHIKVGVINGAEQDV-AEVAKKVAKEKYGLEVELVGF 95
Query: 63 AVPVTFRSLKN-KGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ + N +D + P LE+ + A Y + V
Sbjct: 96 SGSLLPNESTNAGDLDANVFQHRPFLEQDNKAHNYHLVAVGNTFVFPMAGYSRKIKSVAE 155
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPG-NEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ A + + + + L
Sbjct: 156 LKDGATIAIPNDPTNLGRALLLLQKEKLITLKAGTGLLPTAVDITDNPHNLKIMELEG-- 213
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+Q+ R + V + + + + G I V +V + N
Sbjct: 214 AQLPRVLDDPKVDVAIISTTY--LQQTGLSPVRDGIFIEDKNSPYVNIIVTREDNKDAEN 271
Query: 241 ISRLLKNIK 249
+ +++ +
Sbjct: 272 VKEFMQSYQ 280
>gi|188533065|ref|YP_001906862.1| DL-methionine transporter substrate-binding subunit [Erwinia
tasmaniensis Et1/99]
gi|188028107|emb|CAO95964.1| D-methionine-binding lipoprotein MetQ [Erwinia tasmaniensis Et1/99]
Length = 271
Score = 47.1 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 27/282 (9%), Positives = 73/282 (25%), Gaps = 24/282 (8%)
Query: 3 KILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
K A L D + P ++ ++ + + + ++ G +
Sbjct: 6 KTFAAVGALIGTLALVGCDQKAKDPNHIKVGVIVGSEQQV-ADVAAKVAKDKYGLDVELV 64
Query: 61 LLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
V +L ID+ P L++ I + A Y + +
Sbjct: 65 TFNDYVLPNEALSKGDIDVNAFQHKPYLDQQIKDRGYKLVSVGSTFVYPIAGYSKKIKSL 124
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+ + G ++ + + ++E +
Sbjct: 125 DELQNGAQVAIPNDPTNLGRTLLLLQKVG------LIKLKDGVGLLPTSLDVVENPKNLK 178
Query: 180 FSQIR-----RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDY 234
++ R + A+ + + S +N+ G + V +V +
Sbjct: 179 LVELEAPQLPRSLDDQQIALAVINTTYA--SQINLTPAKDGIFVEDKNSPYVNLIVARED 236
Query: 235 LDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
N+ + ++ + N+ + N +
Sbjct: 237 NKDAENVKKFVQAYQ--SDEVNDAANKVFNGG-----AVKGW 271
>gi|237730335|ref|ZP_04560816.1| substrate-binding protein [Citrobacter sp. 30_2]
gi|226905874|gb|EEH91792.1| substrate-binding protein [Citrobacter sp. 30_2]
Length = 320
Score = 47.1 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 1/74 (1%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I + W P + + L ++ +G ++ VVR D+ +K P
Sbjct: 160 AIIAAWQRGDIDGAYVWAPAVNALEKDGKVLTDSSQVGEWGAPTLDVWVVRKDFAEKHPE 219
Query: 241 ISRLLKNIKFSVAL 254
+ +
Sbjct: 220 VVKAFAKSAIDAQQ 233
>gi|323171783|gb|EFZ57427.1| hypothetical protein ECLT68_3423 [Escherichia coli LT-68]
Length = 149
Score = 47.1 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 21/141 (14%), Positives = 39/141 (27%), Gaps = 24/141 (17%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT--NIK 60
K+ A L + + A PV+ T+ A + +LE G T ++
Sbjct: 5 KLWAGSLVMLAAVSLPLQAAS---PVKVGSKIDTEGALLGNIILQVLESH-GVPTVNKVQ 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEG------------------SIKL 102
L PV ++ + +DI+ Y F +
Sbjct: 61 LGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDAAWKNAQQGYEKVKKLDSEHNKLIW 120
Query: 103 VAENLQGAKYMLAVNDVGFAL 123
+ + +AV
Sbjct: 121 LTPAPANNTWTIAVRQDVAEK 141
>gi|319783049|ref|YP_004142525.1| extracellular solute-binding protein family 3 [Mesorhizobium ciceri
biovar biserrulae WSM1271]
gi|317168937|gb|ADV12475.1| extracellular solute-binding protein family 3 [Mesorhizobium ciceri
biovar biserrulae WSM1271]
Length = 316
Score = 47.1 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 36/279 (12%), Positives = 74/279 (26%), Gaps = 23/279 (8%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M +I + L T + + A + T V +GWT A T + E G +K
Sbjct: 1 MNRIAVLTATL-TLAAGLSAPAMAATSVTIGISGWTGFAPLTLAKQAGIFEKHGLDVTLK 59
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ ++ + + L + + +L
Sbjct: 60 KVPQASRPLAIASGDLQCAATTVETWLVWNASGVTTKQIFQLDKSYGADGIVARNNIKTV 119
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
L K+ A G P +N N S K ++
Sbjct: 120 ADLKGKNVASSAP----------GTSPYFMLAWV----LNKNGISTKDVTVVNLEPD--- 162
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV-RSDYLDKCP 239
+ +++EP I++ + + + TV ++L P
Sbjct: 163 -AAAQAFLAGQNDAAVTYEP-FISAVRDKSDQGHILATTLDYPMVLDTVGCTPEFLKTNP 220
Query: 240 NISRLLKNIKFSVALENEMMKLILNN--KQDRQFVGRTM 276
+ ++ L + F + D + +
Sbjct: 221 DAAKALADSYFDALDLIKSDPQKSYETMGADVKQSAKEF 259
>gi|262402206|ref|ZP_06078767.1| ABC-type tungstate transport system binding protein [Vibrio sp.
RC586]
gi|262350988|gb|EEZ00121.1| ABC-type tungstate transport system binding protein [Vibrio sp.
RC586]
Length = 271
Score = 47.1 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 31/273 (11%), Positives = 75/273 (27%), Gaps = 17/273 (6%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYKT 57
M K + +SY+ + T +R A T + + +L E+ GYK
Sbjct: 1 MKKTTFTLAAASLILVSYSASSADDTRIRLAT---TTSTYDSGLLDYLLPKFEQDTGYKV 57
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
++ + +N +D+ M + + F+ KL+ +
Sbjct: 58 DVIATGTGKALKMGENGDVDLVMTHAPKAEASFVEAGYGVLPRKLMYNDFVVVGPDSDPA 117
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL--DMINNNKFSLKGFRLIEAS 175
+ I + + ++ I + I N +
Sbjct: 118 KISDEKNIAKVFENIAKSGAVFISRGDDSGTHKKELGIWAQNNIEPNFGGYRSIGQGMGP 177
Query: 176 ELASFSQIRRD-QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDY 234
L S+++ + + + + + F V V Y
Sbjct: 178 TLNMASEMQAYTLTDRGTWLAYNNKLDLKVLFEG--------DEQLFNPYQVIIVNPERY 229
Query: 235 LDKCPNISRLLKNIKFSVALENEMMKLILNNKQ 267
+++ + + + + +N +Q
Sbjct: 230 PTTQYQAAKVFSDWLVNPKGQQLINDYKVNGQQ 262
>gi|271501463|ref|YP_003334489.1| glycine betaine ABC transporter substrate-binding protein [Dickeya
dadantii Ech586]
gi|270345018|gb|ACZ77783.1| Substrate-binding region of ABC-type glycine betaine transport
system [Dickeya dadantii Ech586]
Length = 320
Score = 47.1 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 39/282 (13%), Positives = 76/282 (26%), Gaps = 31/282 (10%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL 62
KI + + L + + A++ TPV +GWT A T + + G K ++K++
Sbjct: 11 KISLMAVCLASALSAQAQE----TPVAIGISGWTGFAPLTLADKAGIFQQHGLKVDLKMI 66
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
++ + I ++V + LAV
Sbjct: 67 PQKDRHLAVASGAIQ---CAATTVETYVSWAASGVMLKQIVQLDKSYGADGLAVR----- 118
Query: 123 LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ G I PG + M++ N SLK + S
Sbjct: 119 ------NGVNSVHDLKGKTIGVDAPGTSPYFALAWMLDKNGMSLKDVHIATLSP----QA 168
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ +S+EP+ + +L + P +
Sbjct: 169 AAQAFVAGQNDAAMSYEPYLSTIRQQPDKGKILATTLDYPMVMDTLGCTPTFLQQHPQAA 228
Query: 243 RLLKNIKFSVALENE---------MMKLILNNKQDRQFVGRT 275
+ L F + M + + + R
Sbjct: 229 KALVESYFDALEMIKTQPDKSYDIMGAAVKTSGKAFAESARY 270
>gi|222055623|ref|YP_002537985.1| NMT1/THI5 like domain protein [Geobacter sp. FRC-32]
gi|221564912|gb|ACM20884.1| NMT1/THI5 like domain protein [Geobacter sp. FRC-32]
Length = 342
Score = 47.1 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 28/283 (9%), Positives = 71/283 (25%), Gaps = 30/283 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWT--DIAATTAMTSVILEEILGYKTN 58
M +++ L LT ++ A +R + EE G
Sbjct: 1 MKRLILFVLLLT--MVASNAIAGGLPKLRVGYIPEPAHGLYFVANEKGYFKEE--GVDVE 56
Query: 59 I-KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+ + + +LK + +D+ I + + + G + ++
Sbjct: 57 LFQFGSAAEGLAALKAEKLDVGTFGTT----APILFISKGSEFTFIGGMMIGGQAIITRP 112
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
+ L K+ + K L G I +
Sbjct: 113 ERLAELSGKNLKVYKGKKIGLVKLSTG--------DVIFKGALKKAGIDYKKDITFVEL- 163
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEAS-VYTVVRSDYLD 236
+ + + + L + PH ++ N + + + V + ++
Sbjct: 164 GTVASVVEAVKKGAVDAGLVYPPHFSLAEKNYGLKVAHYIEDFYPDYTCCRIVAHTKQVN 223
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
P R +++ K + + +
Sbjct: 224 ADPETYRKF---------LAALIRAYRFYKTNPAETVKIYAKA 257
>gi|238918578|ref|YP_002932092.1| DL-methionine transporter substrate-binding subunit [Edwardsiella
ictaluri 93-146]
gi|238868146|gb|ACR67857.1| lipoprotein, YaeC family [Edwardsiella ictaluri 93-146]
Length = 271
Score = 47.1 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 33/286 (11%), Positives = 76/286 (26%), Gaps = 30/286 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K LA+ L + P ++ + + + ++ G +
Sbjct: 5 FKSLALVGTLLGTLALAGCGQEEKDPNHIKIGVIVGAEQQV-AEVAQKVAKDKYGLNVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V +L ID F + IK L
Sbjct: 64 VTFNDYVLPNEALNKGDIDA---------NAFQHKPYLDQQIKDRGYKLVAVGNTFVYPI 114
Query: 119 VGFALGIKSYQDIAKYKKEL---GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
G++ IKS ++ + G + ++ + + + E
Sbjct: 115 AGYSKKIKSLNELQDGAQIAIPNDPTNLGRSLLLLQSVGLIKLKDGIGLLPTVLDITENP 174
Query: 176 ELASFSQIR-----RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
+ ++ R +N A+ + + S + + G + G V +V
Sbjct: 175 KHLKLVELEAPQLPRSLDDNQIALAVINTTYA--SQIGLTPAKDGIFVEGKDSPYVNLIV 232
Query: 231 RSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
+ N+ + ++ + S + N I N +
Sbjct: 233 AREDNKDAENVKKFVQAYQ-SDEVYNAAN-KIFNGG-----AVKGW 271
>gi|222096412|ref|YP_002530469.1| alkanesulfonates-binding protein [Bacillus cereus Q1]
gi|221240470|gb|ACM13180.1| alkanesulfonates-binding protein [Bacillus cereus Q1]
Length = 328
Score = 47.1 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 30/287 (10%), Positives = 77/287 (26%), Gaps = 31/287 (10%)
Query: 2 YKILAVCLFLTTFSISY----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL---G 54
+K+L+ L ++ F A V+ EE G
Sbjct: 5 FKVLSFALAISLFLFGCEKSTASSKKEDVTVQIGIQQGLSPLLLAQ-KKGWFEEEFKKEG 63
Query: 55 YKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
K P F ++ + +D P + A ++ +
Sbjct: 64 VKVKWTEFQSGPPYFEAIASNRLDFGEVGNSPVISAQAAGIEF---TEIANTSYARKGTG 120
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+ V +K + K + G+ + ++ + K +I+
Sbjct: 121 ILVQKDSKITSVKDLKG----------KKIAVAKGSSAFNLLYRALDKEGINAKDVNVIQ 170
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+ + + + W+P +N + + + + R+
Sbjct: 171 LQPD----EAQPAFESGSVDAWAIWDPFISLHTVNKGAKVITDGEQLNVSSPGFLIARTK 226
Query: 234 YLDKCPNISRLL-----KNIKFSVALENEMMKLILNNKQDRQFVGRT 275
+ + P + K + +E +K+ + K+ + +
Sbjct: 227 FAKEHPELVEKFLKVYEKARVWQDENLDEAIKIYTSAKKIDADIVKE 273
>gi|283834317|ref|ZP_06354058.1| taurine ABC transporter, periplasmic binding protein [Citrobacter
youngae ATCC 29220]
gi|291069847|gb|EFE07956.1| taurine ABC transporter, periplasmic binding protein [Citrobacter
youngae ATCC 29220]
Length = 320
Score = 47.1 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 1/74 (1%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I + W P + + L ++ +G ++ VVR D+ +K P
Sbjct: 160 AIIAAWQRGDIDGAYVWAPAVNALEKDGKVLTDSSQVGEWGAPTLDVWVVRKDFAEKHPE 219
Query: 241 ISRLLKNIKFSVAL 254
+ +
Sbjct: 220 VVKAFAKSAIDAQQ 233
>gi|146317874|ref|YP_001197586.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein
[Streptococcus suis 05ZYH33]
gi|146320064|ref|YP_001199775.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein
[Streptococcus suis 98HAH33]
gi|253751112|ref|YP_003024253.1| extracellular solute binding protein [Streptococcus suis SC84]
gi|253753013|ref|YP_003026153.1| extracellular solute binding protein [Streptococcus suis P1/7]
gi|253754836|ref|YP_003027976.1| extracellular solute binding protein [Streptococcus suis BM407]
gi|145688680|gb|ABP89186.1| ABC-type nitrate/sulfonate/bicarbonate transport system,
periplasmic component [Streptococcus suis 05ZYH33]
gi|145690870|gb|ABP91375.1| ABC-type nitrate/sulfonate/bicarbonate transport system,
periplasmic component [Streptococcus suis 98HAH33]
gi|251815401|emb|CAZ50974.1| extracellular solute binding protein [Streptococcus suis SC84]
gi|251817300|emb|CAZ55030.1| extracellular solute binding protein [Streptococcus suis BM407]
gi|251819258|emb|CAR44533.1| extracellular solute binding protein [Streptococcus suis P1/7]
gi|292557664|gb|ADE30665.1| NLPA lipoprotein [Streptococcus suis GZ1]
Length = 343
Score = 47.1 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 47/298 (15%), Positives = 80/298 (26%), Gaps = 55/298 (18%)
Query: 20 RDADSCTPVRFADT-GWTD-IAATTAMTSVILEEILGYKTN-IKLLAVPVTFRSLKNKGI 76
+ +R A + T + S I +E G + I+ P SL++ I
Sbjct: 35 GHSAKVDTIRIAYMPNFASLHDIITGINSGIFKEE-GLEVELIEFADGPTIIASLESGSI 93
Query: 77 DIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKK 136
DI ++ EG ++VA + G I +
Sbjct: 94 DI------GNIGPGAHKLAIEGRAEVVAFSQLGN----------ADELIARSDRGIDSIE 137
Query: 137 ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFL 196
+L K G G + + S K +I+ S I + V
Sbjct: 138 DLRGKKIGTASGTSAETILKLALLEADLSEKDVEIIDMDA----SAIVTAMLSGSIDVAA 193
Query: 197 SWEPHPINSDLN----IHYLPGGEEISGFGEASVYTVVRSDYLDKCPN-ISRLLKNIKFS 251
+W P+ + L A V Y +K IS+ LK +
Sbjct: 194 TWSPNTTFIKRELKEKVVVLADNSRYREQSPAIASYVTFPGYSEKNNEKISKFLKGLY-- 251
Query: 252 VALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMNN 309
M H + W+ T G D ++ + +
Sbjct: 252 ----RAMDYR----------------AEHMKEVSKWVA---TQIGSD-ITAVQDQLQD 285
>gi|255323845|ref|ZP_05364971.1| substrate-binding region of ABC-type glycine betaine transport
system [Corynebacterium tuberculostearicum SK141]
gi|255299025|gb|EET78316.1| substrate-binding region of ABC-type glycine betaine transport
system [Corynebacterium tuberculostearicum SK141]
Length = 53
Score = 47.1 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 8/47 (17%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 235 LDKCPNISRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+D+ P I L + + E+ + + +D V + L+
Sbjct: 1 MDEHPEIEELFAPLSQLLTDEKMQELNARVDVDGEDYTTVAQDFLQE 47
>gi|195940987|ref|ZP_03086369.1| taurine transporter substrate binding subunit [Escherichia coli
O157:H7 str. EC4024]
Length = 276
Score = 46.8 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 30/247 (12%), Positives = 63/247 (25%), Gaps = 22/247 (8%)
Query: 10 FLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTF 68
+++ V A + A + G K + K +
Sbjct: 7 ITLLGALALWAFQAQAVDVTVAYQTSAEPAKVAQ-ADNTFAKESGAKVDWRKFDSGAAIV 65
Query: 69 RSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSY 128
R+L + + I P E + + G L V
Sbjct: 66 RALASGDVQIGNLGSSPLAVAASQQVPIE---VFLLASQLGNSEALVVKKTITRP----- 117
Query: 129 QDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQR 188
++L K + + + +L + + ++I I +
Sbjct: 118 -------EDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVQIINLQPP----AIIAAWQ 166
Query: 189 NNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKN 247
W P + L E++ +G ++ VVR D+ +K P + +
Sbjct: 167 RGDIDGAYVWAPAVNELEKEGTVLTDSEKVGQWGAPTLDVWVVRKDFAEKHPEVVKAFAR 226
Query: 248 IKFSVAL 254
Sbjct: 227 SAIDAQQ 233
>gi|295096843|emb|CBK85933.1| taurine ABC transporter, periplasmic binding protein [Enterobacter
cloacae subsp. cloacae NCTC 9394]
Length = 320
Score = 46.8 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 12/74 (16%), Positives = 23/74 (31%), Gaps = 1/74 (1%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I + W P + L E++ +G ++ VVR D+ +K P
Sbjct: 160 AIIAAWQRGDIDGAYVWAPAVNELEKEGTVLTDSEKVGQWGAPTLDVWVVRKDFAEKHPE 219
Query: 241 ISRLLKNIKFSVAL 254
+ +
Sbjct: 220 VVKAFAKSAIDAQQ 233
>gi|294634715|ref|ZP_06713247.1| hypothetical protein EDWATA_00512 [Edwardsiella tarda ATCC 23685]
gi|291091891|gb|EFE24452.1| hypothetical protein EDWATA_00512 [Edwardsiella tarda ATCC 23685]
Length = 271
Score = 46.8 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 30/283 (10%), Positives = 75/283 (26%), Gaps = 24/283 (8%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K LA+ L + P ++ + + + ++ G +
Sbjct: 5 FKSLALVGTLLGTLALAGCGQEEKDPNHIKVGVIVGAEQQV-AEVAQKVAKDKYGLNVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V +L ID+ P L++ I + A Y +
Sbjct: 64 VTFNDYVLPNEALSKGDIDVNAFQHKPYLDQQIKDRGYKLVSVGNTFVYPIAGYSKKIKS 123
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ + + + G ++ + + + E +
Sbjct: 124 LDELQDGAQIAIPNDPTNLGRSLLLLQKVG------LIKLKDGIGLLPTVLDITENPKHL 177
Query: 179 SFSQIR-----RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
++ R +N A+ + + S + + G + G V +V +
Sbjct: 178 KLVELEAPQLPRSLDDNQIALAVINTTYA--SQIGLTPAKDGIFVEGKDSPYVNLIVARE 235
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
N+ + ++ + S + N I N +
Sbjct: 236 DNKDAENVKKFVQAYQ-SDEVYNAAN-KIFNGG-----AVKGW 271
>gi|292489198|ref|YP_003532085.1| methionine ABC transporter periplasmic protein [Erwinia amylovora
CFBP1430]
gi|292898567|ref|YP_003537936.1| D-methionine ABC transporter substrate-binding lipoprotein [Erwinia
amylovora ATCC 49946]
gi|291198415|emb|CBJ45522.1| D-methionine ABC transporter, substrate-binding lipoprotein
[Erwinia amylovora ATCC 49946]
gi|291554632|emb|CBA22310.1| Methionine ABC transport system, periplasmic component [Erwinia
amylovora CFBP1430]
gi|312173358|emb|CBX81612.1| Methionine ABC transport system, periplasmic component [Erwinia
amylovora ATCC BAA-2158]
Length = 271
Score = 46.8 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 29/288 (10%), Positives = 72/288 (25%), Gaps = 36/288 (12%)
Query: 3 KILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
K L D + P ++ ++ + + + ++ G +
Sbjct: 6 KTFVAVGALIGTLALVGCDQKAKDPNHIKVGVIVGSEQQV-AEVAAKVAKDKYGLDVELV 64
Query: 61 LLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
V +L ID F + IK L
Sbjct: 65 TFNDYVLPNEALSKGDIDA---------NAFQHKPYLDQQIKDRGYKLVSVGNTFVYPIA 115
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQ------RILDMINNNKFSLKGFRLIE 173
G++ IKS + + I ++ + + ++E
Sbjct: 116 GYSKKIKSLDQL---QNGAQVAIPNDPTNLGRTLLLLQKVGLIKLKDGVGLLPTSLDVVE 172
Query: 174 ASELASFSQIR-----RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYT 228
+ ++ R + A+ + + S +N+ G + V
Sbjct: 173 NPKNLKLVELEAPQLPRSLDDQQIALAVINTTYA--SQINLTPAKDGIFVEDKNSPYVNL 230
Query: 229 VVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
+V + N+ + ++ + N+ + N +
Sbjct: 231 IVAREDNKDAENVKKFVQAYQ--SDEVNDAANKVFNGG-----AVKGW 271
>gi|167841970|ref|ZP_02468654.1| choline sulfatase [Burkholderia thailandensis MSMB43]
Length = 276
Score = 46.8 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 27/58 (46%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 25 CTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGY 82
C VR A GWTDI AT A+ V+L+ LGY+ ++ L+VP+T++ LK ID+F G
Sbjct: 220 CRDVRMAGPGWTDIEATDALAGVVLKA-LGYRQSVSNLSVPITYQGLKKGQIDVFPGN 276
>gi|229520559|ref|ZP_04409983.1| ABC-type tungstate transport system binding protein [Vibrio
cholerae TM 11079-80]
gi|229342383|gb|EEO07377.1| ABC-type tungstate transport system binding protein [Vibrio
cholerae TM 11079-80]
Length = 275
Score = 46.8 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 32/273 (11%), Positives = 75/273 (27%), Gaps = 18/273 (6%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYKT 57
M K + +SY+ + T +R A T + + +L E+ GYK
Sbjct: 5 MKKTTFTLAAASLILVSYSASSADDTRIRLAT---TTSTYDSGLLDYLLPKFEQDTGYKV 61
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
++ + +N +D+ M + + F+ KL+ +
Sbjct: 62 DVIATGTGKALKMGENGDVDLVMTHAPKAEASFVEAGYGVLPRKLMYNDFVVVGPESDPA 121
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL--DMINNNKFSLKGFRLIEAS 175
+ I + + ++ I + I N +
Sbjct: 122 KIADEKNIAKVFENIAKSGAVFISRGDDSGTHKKELGIWAQNKIEPNFGGYRSIGQGMGP 181
Query: 176 ELASFSQIRRD-QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDY 234
L S+++ + + ++ + G + F V V Y
Sbjct: 182 TLNMASEMQAYTLTDRGTWLAY--------NNKLALKILFGGDEQLFNPYQVIIVNPERY 233
Query: 235 LDKCPNISRLLKNIKFSVALENEMMKLILNNKQ 267
+++ + +++ N Q
Sbjct: 234 PTTQYQAAKMFSDW-LVNPKGQQLINEFKVNGQ 265
>gi|259907092|ref|YP_002647448.1| Lipoprotein 28 [Erwinia pyrifoliae Ep1/96]
gi|224962714|emb|CAX54169.1| Lipoprotein 28 [Erwinia pyrifoliae Ep1/96]
gi|283476893|emb|CAY72744.1| D-methionine-binding lipoprotein metQ precursor [Erwinia pyrifoliae
DSM 12163]
Length = 271
Score = 46.8 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 21/265 (7%), Positives = 57/265 (21%), Gaps = 7/265 (2%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
++ L L + + ++ + + + +E G + +
Sbjct: 9 LIVTLLMLGSLPGGCDNKSKDAHHIKVGVINGAEQDV-AEVAKKVAKEKYGLDVELVGFS 67
Query: 64 VPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
+ + +D + P LE+ A Y + +
Sbjct: 68 GSLLPNEPTAHGDLDANVFQHRPFLEQDNKARGTSLVAVGNTFIFPIAGYSKKIKRIAEL 127
Query: 123 LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ A + + + + + +Q
Sbjct: 128 KDGDTLAIPNDPTNLGRALLLLQKEKL-VTLKPNSGLLPTALDITANPRHLKIIETEAAQ 186
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ R + V + + + LN E V +V +
Sbjct: 187 LPRALDDAQVTVAIINTTYIQQTGLNPVRDSVFIEDKQSP--YVNIIVTRANNKDAAKVH 244
Query: 243 RLLKNIKFSVALENEMMKLILNNKQ 267
++ + I N
Sbjct: 245 DFIRAYQ--SPEVAAAADNIFNGGA 267
>gi|283784183|ref|YP_003364048.1| taurine ABC transporter substrate-binding protein (sulfate
starvation induced protein) [Citrobacter rodentium
ICC168]
gi|282947637|emb|CBG87192.1| taurine ABC transporter, substrate-binding protein (sulfate
starvation induced protein) [Citrobacter rodentium
ICC168]
Length = 320
Score = 46.8 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 28/245 (11%), Positives = 60/245 (24%), Gaps = 22/245 (8%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRS 70
++++ V A + A E+ G K + R+
Sbjct: 9 LLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQ-ADNTFEKASGATVAWRKFDSGASIVRA 67
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD 130
L + + I P E + + G L V
Sbjct: 68 LASGDVQIGNLGSSPLAVAASQQVPIE---VFLLASKLGNSEALVVKKTIGKP------- 117
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
++L K + + + +L + + +I I +
Sbjct: 118 -----QDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQLEIINLQPP----AIIAAWQRG 168
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKNIK 249
W P + L + +G ++ VVR D+ ++ P + +
Sbjct: 169 DIDGAYVWAPAVNALEKEGRVLTDLAMVGEWGSPTLDVWVVRKDFAEQHPEVVKAFAKSA 228
Query: 250 FSVAL 254
Sbjct: 229 LDAQQ 233
>gi|327484151|gb|AEA78558.1| ABC-type tungstate transport system, periplasmic binding protein
[Vibrio cholerae LMA3894-4]
Length = 271
Score = 46.8 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 31/273 (11%), Positives = 76/273 (27%), Gaps = 17/273 (6%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYKT 57
M K + + +SY+ + T +R A T + + +L E+ GYK
Sbjct: 1 MKKTTFTLVAASLILVSYSASSADDTRIRLAT---TTSTYDSGLLDYLLPKFEQDTGYKV 57
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
++ + +N +D+ M + + F+ KL+ +
Sbjct: 58 DVIATGTGKALKMGENGDVDLVMTHAPKAEASFVEAGFGVLPRKLMYNDFVVVGPESDPA 117
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL--DMINNNKFSLKGFRLIEAS 175
+ I + + ++ I + I N +
Sbjct: 118 KIADEKNIAKVFENIAKSGAVFISRGDDSGTHKKELGIWAQNKIEPNFGGYRSIGQGMGP 177
Query: 176 ELASFSQIRRD-QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDY 234
L S+++ + + + + + F V V Y
Sbjct: 178 TLNMASEMQAYTLTDRGTWLAYNNKLALKILFEG--------DEQLFNPYQVIIVNPERY 229
Query: 235 LDKCPNISRLLKNIKFSVALENEMMKLILNNKQ 267
+++ + + + + +N +Q
Sbjct: 230 PTTQYQAAKVFSDWLVNPKGQQLINDYKVNGQQ 262
>gi|222055624|ref|YP_002537986.1| extracellular solute-binding protein family 3 [Geobacter sp.
FRC-32]
gi|221564913|gb|ACM20885.1| extracellular solute-binding protein family 3 [Geobacter sp.
FRC-32]
Length = 349
Score = 46.8 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 31/280 (11%), Positives = 72/280 (25%), Gaps = 28/280 (10%)
Query: 1 MYKILAVCLFLTTFSISYA-RDADSCTPVRFADTGWTDIAATTAMTSV-ILEEILGYKTN 58
M KI+++ L + ++ A A ++ T + + G
Sbjct: 1 MKKIVSIVLTIALLALGAAVSQAAPLKKLKVGYLP-TSGHLLYFVAKEKGFFQQEGLDVE 59
Query: 59 I-KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+ + ++K+ +D S Q + +
Sbjct: 60 LFRFTNSGEGLTAIKSGKLDA------GSFGTSAPLAFIAKGADFTIFGGQMGEGHALIA 113
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
A K+ ++ G ++ L + + E
Sbjct: 114 KPEKAERFKNLKNYKGATIAAVRLATGDVVF---------RAALHEAGLDWKKDLTIKEF 164
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLN----IHYLPGGEEISGFGEASVYTVVRSD 233
S + ++ + L+W P+ ++ + Y + T +
Sbjct: 165 DSPAAVQEAVKKGAVDAGLTWIPYYTMAEKQGLVVVKYSGDVIKSHTCCRQVAVTSTLKE 224
Query: 234 YLDKCPN-ISRLLKNIKF----SVALENEMMKLILNNKQD 268
+ LLK +F N + K + +K D
Sbjct: 225 RQADFEKFLVALLKAYRFYQSNKNETVNVVAKYVQIDKAD 264
>gi|253687762|ref|YP_003016952.1| lipoprotein, YaeC family [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251754340|gb|ACT12416.1| lipoprotein, YaeC family [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 271
Score = 46.8 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 29/288 (10%), Positives = 69/288 (23%), Gaps = 30/288 (10%)
Query: 1 MYK----ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
M K ++A + + ++S ++ + + + +E G
Sbjct: 2 MKKWRIALVAGMVTAAMALTACDNASNSANHIKVGVINGAEQDV-ADVAKKVAKEKYGLD 60
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ + + +KG + F+ E KLVA
Sbjct: 61 VELIGFSGSLLPNEATDKGD---LDANVFQHRPFLEQQNREHGYKLVAV-----GNTFVF 112
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK--------FSLKG 168
G++ IK+ D+ +I +
Sbjct: 113 PMAGYSKKIKNINDLKDGDTIAIPFDPTNLGRALLLLEKTGLITLKPDTGLLPTVLDITT 172
Query: 169 FRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYT 228
+Q+ R + V + + + G I V
Sbjct: 173 NPHNLRIMEVEGAQLPRLLDDPKVTVAIISTTY--IQQTGLTPTKDGIFIEDKESPYVNI 230
Query: 229 VVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
+V + + N+ + ++ + + I N +
Sbjct: 231 IVTREDNKEAENVKKFIQAYQ--SDEVEQAANRIFNGG-----AVKGW 271
>gi|330982304|gb|EGH80407.1| alkanesulfonate transporter substrate-binding subunit [Pseudomonas
syringae pv. aptata str. DSM 50252]
Length = 311
Score = 46.4 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 30/253 (11%), Positives = 64/253 (25%), Gaps = 24/253 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSV--ILEEILGY-KT 57
M + L + AD +R + T + +LE+ K
Sbjct: 1 MKSFTFIAAILAFSGLFGTAAADEPDTLRIGYQK---GSITLVLAKEHSLLEKRFPQKKI 57
Query: 58 NIKLLAVPVTFRSLKN-KGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
N +DI P + +A
Sbjct: 58 KWVEFPAGPQMLEALNIGSLDIASTGDIPPIFAQVAGADL-------------VYIGAEP 104
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ + EL + ++ G+ + +L ++N + K + I +
Sbjct: 105 PKPQVETLLVRNESPVHSVAELKGRKVALQKGSSSHNVVLRLLNKAGLTFKDIQPIYLTP 164
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
+ R N + W+P+ + H YT R+ +
Sbjct: 165 ----ADARAAFENGSVDAWAIWDPYYSIAMSEGHTRLLANGEGLGLSGPFYTARRAFAEE 220
Query: 237 KCPNISRLLKNIK 249
+ ++L +
Sbjct: 221 NAALVQQVLDELT 233
>gi|330899039|gb|EGH30458.1| alkanesulfonate transporter substrate-binding subunit [Pseudomonas
syringae pv. japonica str. M301072PT]
Length = 311
Score = 46.4 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 30/253 (11%), Positives = 64/253 (25%), Gaps = 24/253 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSV--ILEEILGY-KT 57
M + L + AD +R + T + +LE+ K
Sbjct: 1 MKSFTFIAAILAFSGLFGTAAADEPDTLRIGYQK---GSITLVLAKEHGLLEKHFPQKKI 57
Query: 58 NIKLLAVPVTFRSLKN-KGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
N +DI P + +A
Sbjct: 58 KWVEFPAGPQMLEALNIGSLDIASTGDIPPIFAQVAGADL-------------VYIGAEP 104
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ + EL + ++ G+ + +L ++N + K + I +
Sbjct: 105 PKPQVETLLVRNESPVHSVAELKGRKVALQKGSSSHNVVLRLLNKAGLTFKDIQPIYLTP 164
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
+ R N + W+P+ + H YT R+ +
Sbjct: 165 ----ADARAAFENGSVDAWAIWDPYYSIAMSEGHTRLLANGEGLGLSGPFYTARRAFAEE 220
Query: 237 KCPNISRLLKNIK 249
+ ++L +
Sbjct: 221 NAALVQQVLDELT 233
>gi|254226577|ref|ZP_04920159.1| conserved hypothetical protein [Vibrio cholerae V51]
gi|125620913|gb|EAZ49265.1| conserved hypothetical protein [Vibrio cholerae V51]
Length = 275
Score = 46.4 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 31/273 (11%), Positives = 74/273 (27%), Gaps = 18/273 (6%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYKT 57
M K + +SY+ + T +R A T + + +L E+ GYK
Sbjct: 5 MKKTTFTLAAASLILVSYSASSADDTRIRLAT---TTSTYDSGLLDYLLPKFEQDTGYKV 61
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
++ + +N +D+ M + + F+ KL+ +
Sbjct: 62 DVIATGTGKALKMGENGDVDLVMTHAPKAEASFVEAGFGVLPRKLMYNDFVVVGPESDPA 121
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL--DMINNNKFSLKGFRLIEAS 175
+ I + + ++ I + I N +
Sbjct: 122 KIADEKNIAKVFENIAKSGAVFISRGDDSGTHKKELGIWAQNKIEPNFGGYRSIGQGMGP 181
Query: 176 ELASFSQIRRD-QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDY 234
L S+++ + + + + + F V V Y
Sbjct: 182 TLNMASEMQAYTLTDRGTWLAYNNKLALKILFEG--------DEQLFNPYQVIIVNPERY 233
Query: 235 LDKCPNISRLLKNIKFSVALENEMMKLILNNKQ 267
+++ + + +++ N Q
Sbjct: 234 PTTQYQAAKVFSDWLVTPKG-QQLINEFKVNGQ 265
>gi|120401150|ref|YP_950979.1| glycine betaine ABC transporter substrate-binding protein
[Mycobacterium vanbaalenii PYR-1]
gi|119953968|gb|ABM10973.1| Substrate-binding region of ABC-type glycine betaine transport
system [Mycobacterium vanbaalenii PYR-1]
Length = 345
Score = 46.4 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 30/268 (11%), Positives = 65/268 (24%), Gaps = 35/268 (13%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRSLKNKGIDI 78
D +R + + E + Y K + + +D
Sbjct: 29 GDDSGKPTIRIGYQTFPSGDLIVKNNKWLEEALPDYNIKWTKFDSGADVNTAFVAGELDF 88
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL 138
P P + V ++ G L V + +L
Sbjct: 89 GALGSSPVARGLSEPLNIPYKVAFV-LDVAGDNEALVVRN----------GAGVDTIAQL 137
Query: 139 GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
+ G + + +L ++ N S +LI+ A + +W
Sbjct: 138 KGRRIGTPFASTAHYSLLAALDQNGLSANDVQLIDLQPQAILA----AWERGDIDAAYTW 193
Query: 199 EPHPINSDLNIHYLPGGEEISGFGEASVYTV-VRSDYLDKCPNISRLLKNIKFSVALENE 257
P L +++ G+ ++ V ++ P + + +
Sbjct: 194 LPTLDELRKTGRDLITSRQLADAGKPTLDLATVSDEFASAHPEAVDVWRQ------QQGR 247
Query: 258 MMKLILNN------------KQDRQFVG 273
+ LI + Q V
Sbjct: 248 ALDLIREDPQAAAEAIAAEIGLTPQDVA 275
>gi|330945368|gb|EGH46978.1| alkanesulfonate transporter substrate-binding subunit [Pseudomonas
syringae pv. pisi str. 1704B]
Length = 311
Score = 46.4 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 30/253 (11%), Positives = 64/253 (25%), Gaps = 24/253 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSV--ILEEILGY-KT 57
M + L + AD +R + T + +LE+ K
Sbjct: 1 MKSFTFIAAILAFSGLFGTAAADEPDTLRIGYQK---GSITLVLAKEHGLLEKRFPQKKI 57
Query: 58 NIKLLAVPVTFRSLKN-KGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
N +DI P + +A
Sbjct: 58 KWVEFPAGPQMLEALNIGSLDIASTGDIPPIFAQVAGADL-------------VYIGAEP 104
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ + EL + ++ G+ + +L ++N + K + I +
Sbjct: 105 PKPQVETLLVRNESPVHSVAELKGRKVALQKGSSSHNVVLRLLNKAGLTFKDIQPIYLTP 164
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
+ R N + W+P+ + H YT R+ +
Sbjct: 165 ----ADARAAFENGSVDAWAIWDPYYSIAMSEGHTRLLANGEGLGLSGPFYTARRAFAEE 220
Query: 237 KCPNISRLLKNIK 249
+ ++L +
Sbjct: 221 NAALVQQVLDELT 233
>gi|289672086|ref|ZP_06492976.1| alkanesulfonate transporter substrate-binding subunit [Pseudomonas
syringae pv. syringae FF5]
Length = 311
Score = 46.4 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 30/253 (11%), Positives = 64/253 (25%), Gaps = 24/253 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSV--ILEEILGY-KT 57
M + L + AD +R + T + +LE+ K
Sbjct: 1 MKSFTFIAAILAFSGLFGTAAADEPDTLRIGYQK---GSITLVLAKEHGLLEKRFPQKKI 57
Query: 58 NIKLLAVPVTFRSLKN-KGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
N +DI P + +A
Sbjct: 58 KWVEFPAGPQMLEALNIGSLDIASTGDIPPIFAQVAGADL-------------VYIGAEP 104
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ + EL + ++ G+ + +L ++N + K + I +
Sbjct: 105 PKPQVETLLVRNESPVHSVAELKGRKVALQKGSSSHNVVLRLLNKAGLTFKDIQPIYLTP 164
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
+ R N + W+P+ + H YT R+ +
Sbjct: 165 ----ADARAAFENGSVDAWAIWDPYYSIAMSEGHTRLLANGEGLGLSGPFYTARRAFAEE 220
Query: 237 KCPNISRLLKNIK 249
+ ++L +
Sbjct: 221 NAALVQQVLDELT 233
>gi|153832414|ref|ZP_01985081.1| extracellular tungstate binding protein [Vibrio harveyi HY01]
gi|148871443|gb|EDL70306.1| extracellular tungstate binding protein [Vibrio harveyi HY01]
Length = 272
Score = 46.4 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 7/97 (7%)
Query: 1 MYKI-LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYK 56
M KI L + T A A +R A T + + +L E+ GYK
Sbjct: 1 MKKIALTLAATSITLVSYSAFSAQEGEHIRLAT---TTSTYHSGLLDYLLPQFEKDTGYK 57
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP 93
+I + +N +D+ M + + F+
Sbjct: 58 VDIIAAGTGKALKMGENGDVDLVMTHAPKAEGAFVEK 94
>gi|239827958|ref|YP_002950582.1| aliphatic sulfonates family ABC transporter periplsmic
ligand-binding protein [Geobacillus sp. WCH70]
gi|239808251|gb|ACS25316.1| aliphatic sulfonates family ABC transporter, periplsmic
ligand-binding protein [Geobacillus sp. WCH70]
Length = 341
Score = 46.4 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 37/305 (12%), Positives = 88/305 (28%), Gaps = 42/305 (13%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCT-----------PVRFADTGWTDIAATTAMTSVIL 49
M K + L ++ ++ T +R
Sbjct: 1 MRKHILFLLISLFIALMSGCGQEATTSTTAKGKEKNITIRIGIQQSLGPLLLAK-EKGWF 59
Query: 50 EEIL---GYKTN-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAE 105
E+ G I+ + P F ++ + +D P + A + K
Sbjct: 60 EKEFAKEGVNVKWIEFQSGPPHFEAMASNNLDFGAVGNSPVISAQAANIQFKEISKAAEG 119
Query: 106 NLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFS 165
A + V + + K + G+ G + + +
Sbjct: 120 LKGDA---IIVPKESKIRSLTDLKG----------KKIAVAKGSSGFNFLYKALEHAGLK 166
Query: 166 LKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEP--HPINSDLNIHYLPGGEEISGFGE 223
+I+ + + + + WEP + GE++ +
Sbjct: 167 ASDVEMIQLQPD----EAQAAFDTHKVDAWAIWEPFISYEVIKNKARIVADGEDLHAYSP 222
Query: 224 ASVYTVVRSDYLDKCPNI-SRLL----KNIKFSVALENEMMKLILNNKQDRQFVGRTMLR 278
+ + V R+ ++ + P++ + L K ++ +E +++ K+ + V LR
Sbjct: 223 S--FIVARTGFIKENPDLTVQFLKIYEKARRWQNDHFDEAVEIYAKAKKLDKDVIVRALR 280
Query: 279 THPDL 283
+P L
Sbjct: 281 NNPSL 285
>gi|290473681|ref|YP_003466553.1| D-methionine ABC transporter periplasmic binding protein
[Xenorhabdus bovienii SS-2004]
gi|289172986|emb|CBJ79757.1| D-methionine transport protein (ABC superfamily, peri_bind)
[Xenorhabdus bovienii SS-2004]
Length = 271
Score = 46.4 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 31/277 (11%), Positives = 78/277 (28%), Gaps = 24/277 (8%)
Query: 1 MYKILAVCLFLTTFSISYA-RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+ I+A+ L T ++ ++ ++ ++ + + +E G +
Sbjct: 5 LKSIVAISALLGTLILAGCDQEPRDPDHIKVGVIVGPELEV-AEVAKKVAKEKYGLDVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V SL ID+ + P L++ + + +I + A Y +
Sbjct: 64 ITFNDYVLPNESLNKGDIDVNVFQHKPFLDQQVKERNYKLTIVGNSFIYPIAAYSRKIKS 123
Query: 119 VGFALGIKSYQDIAKYKKELG-------AKIYGIEPGNEGNQRILDMINN-NKFSLKGFR 170
+G + + ++ G +LD+INN +
Sbjct: 124 LGELENGNQITIPNDPTNQGRALLLLQKQGLITLKEGVGLLPTVLDIINNPKDLDIVELE 183
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
+ +I NN ++ + ++ V +V
Sbjct: 184 APQLPRSLDDQKIAFAIINN------AYAGQVGLTPEQDGLFVEDKD-----SPYVNIIV 232
Query: 231 RSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQ 267
+ N+ + +K + + + I
Sbjct: 233 SREDNKDAENVQKFVKAYQ--SEEVEQAAQRIFKGGA 267
>gi|196233668|ref|ZP_03132509.1| NMT1/THI5 like domain protein [Chthoniobacter flavus Ellin428]
gi|196222338|gb|EDY16867.1| NMT1/THI5 like domain protein [Chthoniobacter flavus Ellin428]
Length = 374
Score = 46.4 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 41/296 (13%), Positives = 82/296 (27%), Gaps = 42/296 (14%)
Query: 2 YKILAVCLFLTTFSISYARD----ADSCTPVRFADTGWT-DIAATTAMTSVILEEILGYK 56
+K++A LF F S R+ DS +R G T + A+ + +E G
Sbjct: 4 FKLIAFALFCAAFLGSCNREADYVPDSSHKIRVGYIGITCEAPIFAAVENGFFKEE-GLD 62
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ L G DI + Y + + + + G + +
Sbjct: 63 VEMVKCDWSQYKDVLALGGFDITH---------HLIMYFLKPIEQGLDVKISGGIHTGCL 113
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRI-LDMINNNKFSLKGFRLIEAS 175
G K K+ + G P N+ + + I+ +R+ A
Sbjct: 114 RVQAAPNGPIKSARDLKGKRIGVPGM-GTPPFIFCNRVLGANGIDAK--RDVEWRVFPA- 169
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLN---IHYLPGGEEISGFGEASVYTVVRS 232
++ + EP + G + E ++
Sbjct: 170 -----GELGLALQKGEVDAIADSEPIGTLLQAQGLVYNVADQGHDAPYKDEYCCAVIING 224
Query: 233 DYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVG-----RTMLRTHPDL 283
YL P ++K + + + + L ++P+L
Sbjct: 225 KYLRHNPKNCAAATR---------ALLKGAKWVQANPRAAARLSVEKKYLASNPEL 271
>gi|52142602|ref|YP_084228.1| alkanesulfonates-binding protein [Bacillus cereus E33L]
gi|51976071|gb|AAU17621.1| alkanesulfonates-binding protein [Bacillus cereus E33L]
Length = 328
Score = 46.4 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 32/287 (11%), Positives = 77/287 (26%), Gaps = 31/287 (10%)
Query: 2 YKILAVCLFLTTFSISY----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL---G 54
+K+L+ L ++ F A V+ EE G
Sbjct: 5 FKVLSFALAISLFLFGCEKSTASSKKEDVTVQIGIQQGLSPLLLAQ-KKGWFEEEFKKEG 63
Query: 55 YKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
K P F ++ + +D P + A ++ +
Sbjct: 64 VKVKWTEFQSGPPYFEAIASNRLDFGEVGNSPVISAQAAGIEF---TEIANTSYARKGTG 120
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+ V +K EL K + G+ + ++ K +I+
Sbjct: 121 ILVQKDSKITSVK----------ELKGKKIAVAKGSSAFNLLYRALDKEGIDAKDVNVIQ 170
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+ + + + W+P +N + + + + R+
Sbjct: 171 LQPD----EAQPAFESGSVDAWAIWDPFISLHTVNKGAKVITDGEILNVSSPEFLIARTK 226
Query: 234 YLDKCPNISRLL-----KNIKFSVALENEMMKLILNNKQDRQFVGRT 275
+ + P + K + +E +K+ + K+ + +
Sbjct: 227 FAKEHPELVEKFLKVYEKARVWQDENLDEAIKIYTSAKKIDADIVKE 273
>gi|254286414|ref|ZP_04961372.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
gi|297579094|ref|ZP_06941022.1| conserved hypothetical protein [Vibrio cholerae RC385]
gi|150423581|gb|EDN15524.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
gi|297536688|gb|EFH75521.1| conserved hypothetical protein [Vibrio cholerae RC385]
Length = 275
Score = 46.4 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 31/273 (11%), Positives = 75/273 (27%), Gaps = 17/273 (6%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYKT 57
M K + +SY+ + T +R A T + + +L E+ GYK
Sbjct: 5 MKKTTFTLAAASLILVSYSASSADDTRIRLAT---TTSTYDSGLLDYLLPKFEQDTGYKV 61
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
++ + +N +D+ M + + F+ KL+ +
Sbjct: 62 DVIATGTGKALKMGENGDVDLVMTHAPKAEASFVEAGFGVLPRKLMYNDFVVVGPESDPA 121
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL--DMINNNKFSLKGFRLIEAS 175
+ I + + ++ I + I N +
Sbjct: 122 KIADEKNIAKVFENIAKSGAVFISRGDDSGTHKKELGIWAQNKIEPNFGGYRSIGQGMGP 181
Query: 176 ELASFSQIRRD-QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDY 234
L S+++ + + + + + F V V Y
Sbjct: 182 TLNMASEMQAYTLTDRGTWLAYNNKLALKILFEG--------DEQLFNPYQVIIVNPERY 233
Query: 235 LDKCPNISRLLKNIKFSVALENEMMKLILNNKQ 267
+++ + + + + +N +Q
Sbjct: 234 PTTQYQAAKVFSDWLVNPKGQQLINDYKVNGQQ 266
>gi|307132335|ref|YP_003884351.1| receptor component of DL-methionine uptake transporter (MUT)
[Dickeya dadantii 3937]
gi|306529864|gb|ADM99794.1| receptor component of DL-methionine uptake transporter (MUT)
[Dickeya dadantii 3937]
Length = 271
Score = 46.4 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 29/277 (10%), Positives = 70/277 (25%), Gaps = 14/277 (5%)
Query: 3 KILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
K LA L + P ++ + + + +E G +
Sbjct: 6 KSLAAVGALIGALALAGCGQEQKNPNHIKVGVIVGAEQQV-AEVAQKVAKEKYGLDVELV 64
Query: 61 LLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
V +L ID+ P L++ I + A Y + +
Sbjct: 65 TFNDYVLPNEALSKGDIDLNAFQHKPYLDQQIKDRGYKLVSVGNTFVYPIAGYSKKIKSL 124
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+ + + G + + ++ +
Sbjct: 125 NDLQNGAQIALPNDPTNLGRSLLLLQKVGLIKLKDNVGLLPT-VLDVTENPKNLKLVELE 183
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
Q+ R ++ A+ + + S +N+ G + V +V +
Sbjct: 184 APQLPRSLDDDQIALAIINTTYA--SQINLTPAKDGLFVEEKDSPYVNLLVAREDNKDAE 241
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
N+ + +K + N+ + N +
Sbjct: 242 NVKKFVKAYQ--SDEVNQAALKVFNGG-----AVKGW 271
>gi|16763634|ref|NP_459249.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Typhimurium str. LT2]
gi|62178814|ref|YP_215231.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SC-B67]
gi|161612620|ref|YP_001586585.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Paratyphi B str. SPB7]
gi|167553339|ref|ZP_02347088.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
gi|167990134|ref|ZP_02571234.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|168230556|ref|ZP_02655614.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Salmonella enterica subsp. enterica serovar
Kentucky str. CDC 191]
gi|168235027|ref|ZP_02660085.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|168245015|ref|ZP_02669947.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
gi|168264657|ref|ZP_02686630.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Salmonella enterica subsp. enterica serovar
Hadar str. RI_05P066]
gi|168464188|ref|ZP_02698091.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|168823083|ref|ZP_02835083.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|194444076|ref|YP_002039485.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Newport str. SL254]
gi|194450347|ref|YP_002044235.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|194469222|ref|ZP_03075206.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|194736374|ref|YP_002113268.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|197249920|ref|YP_002145250.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
gi|197261806|ref|ZP_03161880.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
gi|198246027|ref|YP_002214206.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|200386942|ref|ZP_03213554.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
gi|204927300|ref|ZP_03218502.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Salmonella enterica subsp. enterica serovar
Javiana str. GA_MM04042433]
gi|205351582|ref|YP_002225383.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Gallinarum str. 287/91]
gi|207855763|ref|YP_002242414.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Enteritidis str.
P125109]
gi|224582092|ref|YP_002635890.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Paratyphi C strain
RKS4594]
gi|238911311|ref|ZP_04655148.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Tennessee str.
CDC07-0191]
gi|23396729|sp|Q8ZRN1|METQ_SALTY RecName: Full=D-methionine-binding lipoprotein metQ; Flags:
Precursor
gi|16418750|gb|AAL19208.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|62126447|gb|AAX64150.1| putative outer membrane lipoprotein [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|161361984|gb|ABX65752.1| hypothetical protein SPAB_00311 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194402739|gb|ACF62961.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|194408651|gb|ACF68870.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|194455586|gb|EDX44425.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|194711876|gb|ACF91097.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|195632682|gb|EDX51136.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|197213623|gb|ACH51020.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Salmonella enterica subsp. enterica serovar
Agona str. SL483]
gi|197240061|gb|EDY22681.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
gi|197291660|gb|EDY31010.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|197940543|gb|ACH77876.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Salmonella enterica subsp. enterica serovar
Dublin str. CT_02021853]
gi|199604040|gb|EDZ02585.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
gi|204323965|gb|EDZ09160.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Salmonella enterica subsp. enterica serovar
Javiana str. GA_MM04042433]
gi|205271363|emb|CAR36156.1| putative lipoprotein precursor [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205322180|gb|EDZ10019.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
gi|205331324|gb|EDZ18088.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|205335212|gb|EDZ21976.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Salmonella enterica subsp. enterica serovar
Kentucky str. CDC 191]
gi|205336226|gb|EDZ22990.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
gi|205340616|gb|EDZ27380.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|205346915|gb|EDZ33546.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Salmonella enterica subsp. enterica serovar
Hadar str. RI_05P066]
gi|206707566|emb|CAR31840.1| putative lipoprotein precursor [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|224466619|gb|ACN44449.1| putative lipoprotein precursor [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|261245477|emb|CBG23267.1| putative lipoprotein precursor [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267991935|gb|ACY86820.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Typhimurium str.
14028S]
gi|301156872|emb|CBW16348.1| putative lipoprotein precursor [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312911216|dbj|BAJ35190.1| DL-methionine ABC transporter substrate binding protein [Salmonella
enterica subsp. enterica serovar Typhimurium str.
T000240]
gi|320084499|emb|CBY94292.1| D-methionine-binding lipoprotein metQ Flags: Precursor [Salmonella
enterica subsp. enterica serovar Weltevreden str.
2007-60-3289-1]
gi|321225178|gb|EFX50238.1| Methionine ABC transporter substrate-binding protein [Salmonella
enterica subsp. enterica serovar Typhimurium str.
TN061786]
gi|322616069|gb|EFY12986.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
315996572]
gi|322620852|gb|EFY17712.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-1]
gi|322623797|gb|EFY20634.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-3]
gi|322627245|gb|EFY24036.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-4]
gi|322630552|gb|EFY27316.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-1]
gi|322638230|gb|EFY34931.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-2]
gi|322640714|gb|EFY37365.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Montevideo str. 531954]
gi|322645501|gb|EFY42028.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322648206|gb|EFY44673.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
OH_2009072675]
gi|322657157|gb|EFY53440.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322657526|gb|EFY53798.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Montevideo str. 19N]
gi|322663846|gb|EFY60046.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
81038-01]
gi|322666679|gb|EFY62857.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
MD_MDA09249507]
gi|322672163|gb|EFY68275.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Montevideo str. 414877]
gi|322676526|gb|EFY72597.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Montevideo str. 366867]
gi|322679382|gb|EFY75427.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Montevideo str. 413180]
gi|322686292|gb|EFY82276.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Montevideo str. 446600]
gi|322713268|gb|EFZ04839.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Choleraesuis str. A50]
gi|323128565|gb|ADX15995.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Typhimurium str. 4/74]
gi|323193471|gb|EFZ78679.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
609458-1]
gi|323197507|gb|EFZ82642.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
556150-1]
gi|323201224|gb|EFZ86293.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Montevideo str. 609460]
gi|323209619|gb|EFZ94552.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
507440-20]
gi|323210296|gb|EFZ95191.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Montevideo str. 556152]
gi|323216434|gb|EGA01160.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB101509-0077]
gi|323223376|gb|EGA07711.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB102109-0047]
gi|323225937|gb|EGA10157.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB110209-0055]
gi|323228522|gb|EGA12651.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB111609-0052]
gi|323236865|gb|EGA20941.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009083312]
gi|323239635|gb|EGA23682.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009085258]
gi|323242318|gb|EGA26347.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
315731156]
gi|323249980|gb|EGA33876.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2009159199]
gi|323252410|gb|EGA36261.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008282]
gi|323255693|gb|EGA39446.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008283]
gi|323262870|gb|EGA46420.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008284]
gi|323265356|gb|EGA48852.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008285]
gi|323271857|gb|EGA55275.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008287]
gi|326621949|gb|EGE28294.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Dublin str. 3246]
gi|326626609|gb|EGE32952.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Gallinarum str. 9]
gi|332987197|gb|AEF06180.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Typhimurium str. UK-1]
Length = 271
Score = 46.4 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 27/283 (9%), Positives = 69/283 (24%), Gaps = 24/283 (8%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K A L D P ++ + + + +E G +
Sbjct: 5 FKTFAAVGALIGSLALAGCGQDEKDPNHIKVGVIVGAEQQV-AEVAQKVAKEKYGLDVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V +L ID P L++ I + A Y +
Sbjct: 64 VTFNDYVLPNEALSKGDIDANAFQHKPYLDQQIKDRGYKLVSVGKTFVYPIAGYSKKIKS 123
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ + + + G ++ + + ++E +
Sbjct: 124 LDELKDGSQVAVPNDPTNLGRSLLLLQKVG------LIKLKDGVGLLPTSLDIVENPKNL 177
Query: 179 SFSQIR-----RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
++ R + A+ + + S + + G + V +V +
Sbjct: 178 KIVELEAPQLPRSLDDAQIALAVINTTYA--SQIGLTPAKDGIFVEDKDSPYVNLIVTRE 235
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
N+ + ++ + E + N +
Sbjct: 236 DNKDAENVKKFVQAYQ--SDEVYEAANKVFNGG-----AVKGW 271
>gi|218661618|ref|ZP_03517548.1| glycine betaine ABC transporter, substrate binding protein
[Rhizobium etli IE4771]
Length = 191
Score = 46.4 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 36/194 (18%), Positives = 63/194 (32%), Gaps = 27/194 (13%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-- 58
M K LA+ + L+ F+ + AD V + T+ + ++ LE G KT
Sbjct: 1 MLKKLALAVSLSAFAAGAVQAAD----VVVSSKIDTEGTLLGNVIALALEAN-GIKTQDR 55
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEG------------------SI 100
I L A PV +++ IDI+ Y + F I
Sbjct: 56 IALGATPVVRKAITAGEIDIYPEYTGNAGFFFNKADDAAWKNNDQGYELAKKLDYDANKI 115
Query: 101 KLVAENLQGAKYMLAVNDVGFALG-IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI 159
+ + + LAV + +K+ + K+ G + L
Sbjct: 116 VWLTPSPANNTWALAVRNDVAEPNKLKTMSEFGKWVAGGGTAKLAASSEFVNSAGALPAF 175
Query: 160 N-NNKFSLKGFRLI 172
F LK +++
Sbjct: 176 QTTYGFQLKPDQMV 189
>gi|262044727|ref|ZP_06017775.1| D-methionine ABC superfamily ATP binding cassette transporter,
binding protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259037917|gb|EEW39140.1| D-methionine ABC superfamily ATP binding cassette transporter,
binding protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 271
Score = 46.4 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 32/286 (11%), Positives = 72/286 (25%), Gaps = 30/286 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K A L D P ++ + + + +E G +
Sbjct: 5 FKTFAAVGALIGSLALVGCGQDEKDPNHIKVGVIVGAEQQV-AEVAQKVAKEKYGLDVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V +L ID+ F + IK L
Sbjct: 64 VTFNDYVLPNEALSKGDIDV---------NAFQHKPYLDQQIKDRGYKLVAVGNTFVYPI 114
Query: 119 VGFALGIKSYQDIAKYKKEL---GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
G++ IKS ++ + G ++ + + ++E
Sbjct: 115 AGYSKKIKSLDELQPGSQIAVPNDPTNLGRSLLLLQQVGLIKLKDGLGLLPTSLDIVENP 174
Query: 176 ELASFSQIR-----RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
+ ++ R + A+ + + S + + G + G V +V
Sbjct: 175 KNLKIVELEAPQLPRSLDDAQIALAVINTTYA--SQIGLTPAKDGIFVEGKESPYVNLIV 232
Query: 231 RSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
+ N+ + ++ + E I N +
Sbjct: 233 AREDNKDAENVKKFVQAYQ--SDEVYEAANKIFNGG-----AVKGW 271
>gi|206973639|ref|ZP_03234557.1| putative sulfonate ABC transporter, sulfonate-binding protein
[Bacillus cereus H3081.97]
gi|206747795|gb|EDZ59184.1| putative sulfonate ABC transporter, sulfonate-binding protein
[Bacillus cereus H3081.97]
Length = 328
Score = 46.4 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 30/287 (10%), Positives = 77/287 (26%), Gaps = 31/287 (10%)
Query: 2 YKILAVCLFLTTFSISY----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL---G 54
+K+L+ L ++ F A V+ EE G
Sbjct: 5 FKVLSFALAISLFLFGCEKSTASSKKEDVTVQIGIQQGLSPLLLAQ-KKGWFEEEFKKEG 63
Query: 55 YKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
K P F ++ + +D P + A ++ +
Sbjct: 64 VKVKWTEFQSGPPYFEAIASNRLDFGEVGNSPVISAQAAGIEF---TEIANTSYARKGTG 120
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+ V +K + K + G+ + ++ + K +I+
Sbjct: 121 ILVQKDSKITSVKDLKG----------KKIAVAKGSSAFNLLYRALDKEGINAKDVNVIQ 170
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+ + + + W+P +N + + + + R+
Sbjct: 171 LQPD----EAQPAFESGSVDAWAIWDPFISLHTVNKGAKVITDGEQLNVSSPEFLIARTK 226
Query: 234 YLDKCPNISRLL-----KNIKFSVALENEMMKLILNNKQDRQFVGRT 275
+ + P + K + +E +K+ + K+ + +
Sbjct: 227 FAKEHPELVEKFLKVYEKARVWQDENLDEAIKIYTSAKKIDADIVKE 273
>gi|303327701|ref|ZP_07358141.1| putative sulfonate ABC transporter, sulfonate-binding protein
[Desulfovibrio sp. 3_1_syn3]
gi|302862062|gb|EFL84996.1| putative sulfonate ABC transporter, sulfonate-binding protein
[Desulfovibrio sp. 3_1_syn3]
Length = 359
Score = 46.4 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 34/249 (13%), Positives = 64/249 (25%), Gaps = 8/249 (3%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMT---SVILEEILGYKT 57
M K F +S + A + + T W D T M ++ G
Sbjct: 1 MLKKWIALAMAAVFVLSISGAAMAAGKLVKVPTAWMDEHETFLMWYAKEKGWDKEAGLDV 60
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
IK + N + + L +I + N + + V
Sbjct: 61 EIKYFNSG---ADILNALPSGEWVFAGMGAVPAMLGNLRYDTIIIANGNDESMTNGVVVR 117
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
+K + + G +++ L +
Sbjct: 118 KDSPISKVKGWNKDYPDVLGSPETVKGKTFLVTTVSSAHYALSSWLNVLGLKDSDVVIKN 177
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDK 237
+Q NNI W PH + L ++ G + + + Y +
Sbjct: 178 MDQAQAVGAFENNIGDGVALWAPHLFLAMDKGGVLAADLKMCKKG-NPIVLIADAKYANA 236
Query: 238 CPNI-SRLL 245
P I ++ L
Sbjct: 237 HPEITAKFL 245
>gi|150398339|ref|YP_001328806.1| aliphatic sulfonate ABC transporter periplasmic ligand-binding
protein [Sinorhizobium medicae WSM419]
gi|150029854|gb|ABR61971.1| aliphatic sulfonates family ABC transporter, periplsmic
ligand-binding protein [Sinorhizobium medicae WSM419]
Length = 344
Score = 46.4 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 36/311 (11%), Positives = 79/311 (25%), Gaps = 42/311 (13%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIA-ATTAMTSVILEEILGYKTNI 59
M ++A L + A+ P+R D A + I G ++
Sbjct: 1 MKHLIAA--ILAATLSTGTAWAEDPLPIRIGAASAVDHAPVFIGVEKGIF-AAHGLDADV 57
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ V + N ++ F++ + L+ +L G +D
Sbjct: 58 VMYQSGV---DMVNGLMNGAQEVNVMGSVPFLSGISRGFPLVLIG-HLHGDPNRTDYSDN 113
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+ L K G+ G + ++ + S K +L+
Sbjct: 114 QSVIASAESGVKKADIAALAGKRIGLPRGTGAEGYLFGLLKSAGLSEKDVQLVNVQP--- 170
Query: 180 FSQIRRDQRNNIPAVFLSWEP---HPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
+++ W+P + + G + ++ T
Sbjct: 171 -AELVTALTQGDVDAISIWQPWAATALTKIEGTVEVVAGGCAGCYDPGTILT--TRMVAT 227
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKN----WLIGVT 292
+ P + M + +R +PD W+ GV
Sbjct: 228 EKPEELKRF-------------MAAFAE--------AQQWVRQNPDKAAEINTRWISGVD 266
Query: 293 TFDGQDPSRQL 303
+ +
Sbjct: 267 AETMALALKNI 277
>gi|56412518|ref|YP_149593.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Paratyphi A str. ATCC
9150]
gi|197361453|ref|YP_002141089.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Paratyphi A str.
AKU_12601]
gi|56126775|gb|AAV76281.1| putative lipoprotein precursor [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|197092929|emb|CAR58358.1| putative lipoprotein precursor [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
Length = 271
Score = 46.4 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 28/283 (9%), Positives = 69/283 (24%), Gaps = 24/283 (8%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K A L D P ++ + + + +E G +
Sbjct: 5 FKTFAAVGALIGSLALAGCGQDEKDPNHIKVGVIVGAEQQV-AEVAQKVAKEKYGLDVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V +L ID P L++ I + A Y +
Sbjct: 64 VTFNDYVLPNEALSKGDIDANAFQHKPYLDQQIKDRGYKLVSVGKTFVYPIAGYSKKIKS 123
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ + + + G ++ + + ++E +
Sbjct: 124 LDELKDGSQVAVPNDPTNLGRSLLLLQKVG------LIKLKDGVGLLPTSLDIVENPKNL 177
Query: 179 SFSQIR-----RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
++ R + A+ + + S + + G + V +V +
Sbjct: 178 KIVELEAPQLPRSLDDAQIALAVINTTYA--SQIGLTPAKDGIFVEDKDSPYVNLIVTRE 235
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
N+ + ++ + E I N +
Sbjct: 236 DNKDAENVKKFVQAYQ--SDEVYEAANKIFNGG-----AVKGW 271
>gi|317491246|ref|ZP_07949682.1| YaeC family lipoprotein [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316920793|gb|EFV42116.1| YaeC family lipoprotein [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 270
Score = 46.4 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 28/272 (10%), Positives = 67/272 (24%), Gaps = 21/272 (7%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
IL F AD ++ + + + +E G + +
Sbjct: 8 ILLATALGALFLTGCDNKADQANHIKVGVINGAEQDV-AEVAQKVAKEKYGLDVELVGFS 66
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+ +KG + ++A + KLVA G++
Sbjct: 67 GSLLPNDATDKG---ELDANVFQHRPYLAEQNKAHGYKLVAV-----GNTFVFPMAGYSD 118
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI---NNNKFSLKGFRLIEASELASF 180
IK+ ++ K + +I + + +
Sbjct: 119 KIKNVSELKKGDTIAIPNDPTNLGRALLLLQKEKLITVNQDKGLLPTSIDITSNPLNLNI 178
Query: 181 SQIRRD-----QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYL 235
++ ++ V + + + L+ E V +V +
Sbjct: 179 MELEGAQLPHVLKDPKVTVAIISTTYLQQTGLSPVKDSVFIEDKESP--YVNIIVTREDN 236
Query: 236 DKCPNISRLLKNIKFSVALENEMMKLILNNKQ 267
N+ +K+ + + I N
Sbjct: 237 KDAANVRDFVKSYE--SPEVAAAAEKIFNGGA 266
>gi|212710374|ref|ZP_03318502.1| hypothetical protein PROVALCAL_01434 [Providencia alcalifaciens DSM
30120]
gi|212686956|gb|EEB46484.1| hypothetical protein PROVALCAL_01434 [Providencia alcalifaciens DSM
30120]
Length = 273
Score = 46.0 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 25/283 (8%), Positives = 74/283 (26%), Gaps = 21/283 (7%)
Query: 1 MYKILAVCLFLTTFSISYARDADSC-TPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+ I V L T +++ + ++ + + + +E G +
Sbjct: 5 LKSIAVVGALLGTLALAGCGEKQKDPNSIKVGVIMGKEFEV-AEVAQKVAKEKYGLNVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V +L ID P L++ I + A Y +
Sbjct: 64 VSFNDFVLPNEALSKGDIDANAFQHKPYLDQQIKDRNYKLVPVGNTFIYPIAGYSKQIKS 123
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ + + + G ++ + + ++E +
Sbjct: 124 IDELADGSQVALPNDPTNLGRSLLLLQKQG------LIKLKDGTGLMPTVLDVVENPKGL 177
Query: 179 SFSQIR-----RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
F ++ R + A+ + ++ + G + V +V +
Sbjct: 178 KFVELEAPQLPRALDDQKIALAIINTTWASSATPKLTPAKDGLFVEDKDSPYVNIIVTRE 237
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
N+ + ++ + S + + + + +
Sbjct: 238 DNKDSENVKKFIQAYQ-SNEVAEKAN-EVFDGG-----AVKGW 273
>gi|42782016|ref|NP_979263.1| sulfonate ABC transporter, sulfonate-binding protein, putative
[Bacillus cereus ATCC 10987]
gi|42737940|gb|AAS41871.1| sulfonate ABC transporter, sulfonate-binding protein, putative
[Bacillus cereus ATCC 10987]
Length = 328
Score = 46.0 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 31/286 (10%), Positives = 76/286 (26%), Gaps = 31/286 (10%)
Query: 3 KILAVCLFLTTFSISY----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL---GY 55
KIL+ L ++ F A V+ EE G
Sbjct: 6 KILSFALAISFFLFGCEKSTASSKKEDVTVQIGIQQGLSPLLLAQ-KKGWFEEEFKKEGV 64
Query: 56 KTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
K P F ++ + +D P + A ++ + +
Sbjct: 65 KVKWTEFQSGPPYFEAIASNRLDFGEVGNSPVISAQAAGIEF---TEIANTSYARKGTGI 121
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
V +K + K + G+ + ++ + K +I+
Sbjct: 122 LVQKDSKITSVKDLKG----------KKIAVAKGSSAFNLLYRALDKEGINAKDVNVIQL 171
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDY 234
+ + + + W+P +N + + + + R+ +
Sbjct: 172 QPD----EAQPAFESGSVDAWAIWDPFISLHTVNKGAKVITDGEQLNVSSPEFLIARTKF 227
Query: 235 LDKCPNISRLL-----KNIKFSVALENEMMKLILNNKQDRQFVGRT 275
+ P + K + +E +K+ + K+ + +
Sbjct: 228 AKEHPELVEKFLKVYEKARVWQDENLDEAIKIYTSAKKIDADIVKE 273
>gi|226945008|ref|YP_002800081.1| ABC-type nitrate/sulfonate/bicarbonate transport system,substrate
binding component [Azotobacter vinelandii DJ]
gi|226719935|gb|ACO79106.1| ABC-type nitrate/sulfonate/bicarbonate transport system,substrate
binding component [Azotobacter vinelandii DJ]
Length = 356
Score = 46.0 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 48/301 (15%), Positives = 72/301 (23%), Gaps = 59/301 (19%)
Query: 4 ILAVCLFLTTFSISYARDAD-----------SCTPVRFADTGWTDIAATTAMTSVILEEI 52
+L L L F+ +A AD T + F D T + + EE
Sbjct: 17 VLRSALVLLCFTPLFAHAADVDASRLPESIPEGTRLVFGDQN---EKVQTLLKASGHEEK 73
Query: 53 LGYKTNI-KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAK 111
LG++ P + + +DI P A E + A
Sbjct: 74 LGFEIEYANFRGGPAILEAFRAGALDIATVGSTP---PIQAQVAGEDLPIVAAAQSSEPA 130
Query: 112 YMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
Y LAV+ +K L G +L + K L
Sbjct: 131 YGLAVSPGAKVTSLK----------ALKGTKIAYAEGTARQPFVLKALREGGLGRKDVTL 180
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYT--- 228
+ R V EPH S E FGE +V
Sbjct: 181 VPLRVDDFV----DALRTGQVDVAALTEPH--FSRYIGEGPDRQERHIPFGEHAVLPREL 234
Query: 229 ---VVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLK 285
+ L + ++ +K I HP+
Sbjct: 235 TFLYASAKSLKDEAKAAAIVSLVK----------HWI---------AANQWAEAHPEDWA 275
Query: 286 N 286
Sbjct: 276 K 276
>gi|187733683|ref|YP_001879070.1| taurine transporter substrate binding subunit [Shigella boydii CDC
3083-94]
gi|187430675|gb|ACD09949.1| taurine ABC transporter, periplasmic taurine-binding protein
[Shigella boydii CDC 3083-94]
Length = 320
Score = 46.0 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 27/245 (11%), Positives = 62/245 (25%), Gaps = 22/245 (8%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRS 70
++++ V A + A + G + K + R+
Sbjct: 9 LLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQ-ADNTFAKESGASVDWRKFDSGASIVRA 67
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD 130
L + + I P E + + G L V
Sbjct: 68 LASGDVQIGNLGSSPLAVAANQQVPIE---VFLLASKLGNSEALVVKKTISKP------- 117
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNN 190
++L K + + + +L + + ++ I +
Sbjct: 118 -----EDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNLQPP----AIIAAWQRG 168
Query: 191 IPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKNIK 249
W P + + L E++ +G ++ VV D+ +K P + +
Sbjct: 169 DIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVCKDFAEKHPEVVKAFAKSA 228
Query: 250 FSVAL 254
Sbjct: 229 IDAQQ 233
>gi|218673544|ref|ZP_03523213.1| amino acid ABC transporter substrate-binding protein [Rhizobium
etli GR56]
Length = 64
Score = 46.0 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 10/64 (15%), Positives = 20/64 (31%)
Query: 9 LFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTF 68
+ L + A C+ A W + + L E G+ +++ T
Sbjct: 1 MTLGLLGGASFASAAECSSATIASMNWHSAEVLSNLYKFFLNEFYGWSADLRFGDPVPTI 60
Query: 69 RSLK 72
S+
Sbjct: 61 TSMA 64
>gi|331675144|ref|ZP_08375898.1| lipoprotein 28 [Escherichia coli TA280]
gi|331067682|gb|EGI39083.1| lipoprotein 28 [Escherichia coli TA280]
Length = 272
Score = 46.0 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 22/252 (8%), Positives = 57/252 (22%), Gaps = 19/252 (7%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP 65
A + + ++ + + + +E G + +
Sbjct: 12 AALFLAGILLAGCDQSSSDEKHIKVGVINGAEQDV-AEVAKKVAKEKYGLDVELVGFSGS 70
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
+ N + F+ + KLVA G++ I
Sbjct: 71 LLPNDATN---HGELDANVFQHRPFLEQDNQAHGYKLVAV-----GNTFVFPMAGYSKKI 122
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI---NNNKFSLKGFRLIEASELASFSQ 182
K+ I + + +I + E +
Sbjct: 123 KTVAQIKEGATVAIPNDPTNLGRALLLLQKEKLITLKEGKGLLPTALDITENPRHLQIME 182
Query: 183 IRRD-----QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDK 237
+ + V + + + L+ + E V +V +
Sbjct: 183 LEGAQLPRVLDDPKVDVAIISTTYIQQTGLSPVHDSVFIEDKNSP--YVNILVALEDNKN 240
Query: 238 CPNISRLLKNIK 249
N+ L++ +
Sbjct: 241 AENVKEFLQSYQ 252
>gi|325496129|gb|EGC93988.1| DL-methionine transporter subunit [Escherichia fergusonii ECD227]
Length = 271
Score = 46.0 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 25/283 (8%), Positives = 70/283 (24%), Gaps = 24/283 (8%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K A L D P ++ + + + ++ G +
Sbjct: 5 FKTFAAVGALIGSLALVGCGQDEKDPNHIKVGVIVGAEQQV-AEVAQKVAKDKYGLDVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V +L ID P L++ + + + A Y +
Sbjct: 64 VTFNDYVLPNEALSKGDIDANAFQHKPYLDQQLKDRGYKLVVVGNTFVYPIAGYSKKIKS 123
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ + + + G ++ + + ++E +
Sbjct: 124 LDELQDGSQVAVPNDPTNLGRSLLLLQKVG------LIKLKDGVGLLPTVLDVVENPKNL 177
Query: 179 SFSQIR-----RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
++ R + A+ + + S + + G + V +V +
Sbjct: 178 KIVELEAPQLPRSLDDAQIALAVINTTYA--SQIGLTPAKDGIFVEDKESPYVNLIVTRE 235
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
N+ + ++ + E + N +
Sbjct: 236 DNKDAENVKKFVQAYQ--SDEVYEAANKVFNGG-----AVKGW 271
>gi|300117755|ref|ZP_07055526.1| alkanesulfonates-binding protein [Bacillus cereus SJ1]
gi|298724855|gb|EFI65526.1| alkanesulfonates-binding protein [Bacillus cereus SJ1]
Length = 328
Score = 46.0 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 32/287 (11%), Positives = 77/287 (26%), Gaps = 31/287 (10%)
Query: 2 YKILAVCLFLTTFSISY----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL---G 54
+K+L+ L ++ F A V+ EE G
Sbjct: 5 FKVLSFALAISLFLFGCEKSTASSKKEDVTVQIGIQQGLSPLLLAQ-KKGWFEEEFKKEG 63
Query: 55 YKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
K P F ++ + +D P + A ++ +
Sbjct: 64 VKVKWTEFQSGPPYFEAIASDRLDFGEVGNSPVISAQSAGIGF---TEIANTSYARKGTG 120
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+ V +K EL K + G+ + ++ K +I+
Sbjct: 121 ILVQQDSKITSVK----------ELKGKKIAVAKGSSAFNLLYRALDKEGIDAKDVNVIQ 170
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+ + + + W+P +N + + + + R+
Sbjct: 171 LQPD----EAQPAFESGSVDAWAIWDPFISLHTVNKGAKVITDGEILNVSSPEFLIARTK 226
Query: 234 YLDKCPNISRLL-----KNIKFSVALENEMMKLILNNKQDRQFVGRT 275
+ + P + K + +E +K+ + K+ + +
Sbjct: 227 FAKEHPELVEKFLKVYEKARVWQDENLDEAIKIYNSAKKIDAEIVKE 273
>gi|253988148|ref|YP_003039504.1| DL-methionine transporter substrate-binding subunit [Photorhabdus
asymbiotica subsp. asymbiotica ATCC 43949]
gi|253779598|emb|CAQ82759.1| d-methionine-binding periplasmic protein metq [Photorhabdus
asymbiotica]
Length = 271
Score = 46.0 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 24/278 (8%), Positives = 73/278 (26%), Gaps = 22/278 (7%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
L + + ++ ++ + + + ++ G +
Sbjct: 10 TISALLGSLILVGCGQEKRDPNHIKVGVIVGAEQEV-AEIAKKVAKDKYGLDVELVTFND 68
Query: 65 PVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
V +L ID+ P L++ I + + A Y + +
Sbjct: 69 FVLPNEALSKGDIDLNAYQHKPYLDQQIKDRSYKLVTVGNSFVYPIAGYSKKIKSLDELQ 128
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
+ + + + Q ++ + ++ ++E + ++
Sbjct: 129 DGSQIALPSDPTNLGRSLLLLQK------QDLIKLKDDIGLLPTILDIVENPKNLKLVEL 182
Query: 184 R-----RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
R + A+ + + S + + G + V +V +
Sbjct: 183 EAPQLPRSLDDQKIALAIINTTYA--SQIGLTPAKDGLFVEDKDSPYVNLLVSREDNKDA 240
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
N+ + +K + +E I N +
Sbjct: 241 ENVKKFVKAYQ--SDEVDEAANKIFNGG-----AVKGW 271
>gi|124005141|ref|ZP_01689983.1| alpha-amylase, putative [Microscilla marina ATCC 23134]
gi|123989393|gb|EAY28954.1| alpha-amylase, putative [Microscilla marina ATCC 23134]
Length = 756
Score = 46.0 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 16/107 (14%), Positives = 34/107 (31%), Gaps = 8/107 (7%)
Query: 198 WEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENE 257
W+ D + ++ + + + V F+ +
Sbjct: 316 WDAMYFFYDYDQFVPATQHKLFRWTKWNWKKVGIRGLRMDAIK--------HFTPTFVGD 367
Query: 258 MMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLE 304
++ + +N D V T+PD LK W+ V +D R ++
Sbjct: 368 LLDYLHDNGIDPGMVVGEWYGTNPDELKGWINNVLNSMDEDTKRAIK 414
>gi|300718731|ref|YP_003743534.1| taurine ABC transporter periplasmic protein [Erwinia billingiae
Eb661]
gi|299064567|emb|CAX61687.1| taurine ABC transporter, periplasmic substrate-binding protein
[Erwinia billingiae Eb661]
Length = 326
Score = 46.0 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 33/242 (13%), Positives = 66/242 (27%), Gaps = 22/242 (9%)
Query: 8 CLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPV 66
L L S+ + + V A + A + G K + K +
Sbjct: 6 TLTLIAASLGLSALSAQAVDVTVAYQTSAEPAKVAQ-ADNTFAKESGAKVDWRKFDSGAS 64
Query: 67 TFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIK 126
R+L + + I P E + + G + V +
Sbjct: 65 VVRALASGDVQIGNIGSSPLAVAASQQVPIE---VFLLASQLGNSEAMVVKNTI------ 115
Query: 127 SYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRD 186
K K+L K + + + +L + + ++I I
Sbjct: 116 ------KTPKDLIGKRIAVPFISTTHYSLLSALKHWGIRPDQLQIINLQPP----AIIAA 165
Query: 187 QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLL 245
+ W P + L +++ +G ++ VVR D+ K P +
Sbjct: 166 WQRGDIDGAYVWAPAVNELEKTGKVLTDSDQVGKWGSPTLDVWVVRKDFAQKHPEVVTAF 225
Query: 246 KN 247
Sbjct: 226 AR 227
>gi|288932957|ref|YP_003437016.1| lipoprotein, YaeC family [Klebsiella variicola At-22]
gi|288887686|gb|ADC56004.1| lipoprotein, YaeC family [Klebsiella variicola At-22]
Length = 269
Score = 46.0 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 21/249 (8%), Positives = 59/249 (23%), Gaps = 7/249 (2%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL 62
+ A + + + + ++ + + + +E G +
Sbjct: 6 RAAAAVMLAGLALVGCDQKGNEAKHIKVGVINGAEQDV-AEVAKKVAKEKYGLDVELVGF 64
Query: 63 AVPVTFRSLKN-KGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ + N +D + P LE+ + A Y + V
Sbjct: 65 SGSLLPNESTNAGDLDANVFQHRPFLEQDNKAHNYHLVAVGNTFVFPMAGYSRKIKSVAE 124
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPG-NEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ A + + + + L
Sbjct: 125 LKDGATIAIPNDPTNLGRALLLLQKEKLITLKAGTGLLPTAVDITDNPHNLKIMELEG-- 182
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+Q+ R + V + + + + G I V +V + N
Sbjct: 183 AQLPRVLDDPKVDVAIISTTY--LQQTGLSPVRDGIFIEDKNSPYVNIIVTREDNKDAEN 240
Query: 241 ISRLLKNIK 249
+ +++ +
Sbjct: 241 VKEFMQSYQ 249
>gi|229161777|ref|ZP_04289756.1| aliphatic sulfonates-binding protein [Bacillus cereus R309803]
gi|228621744|gb|EEK78591.1| aliphatic sulfonates-binding protein [Bacillus cereus R309803]
Length = 328
Score = 46.0 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 32/280 (11%), Positives = 74/280 (26%), Gaps = 27/280 (9%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL---GYKTNIKL 61
LA+ LFL S A V+ EE G K
Sbjct: 12 LAIFLFLFGCEKSTASSKKEDVTVQIGIQQGLSPLLLAQ-KKGWFEEEFKKEGVKVKWTE 70
Query: 62 LAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
P F ++ + +D P + A ++ + + V
Sbjct: 71 FQSGPPYFEAIASNRLDFGEVGNSPVISAQAAGIGF---TEIANTSYARKGTGILVQKDS 127
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+K + K + G+ + ++ K +I+
Sbjct: 128 KITSVKDLKG----------KKIAVAKGSSAFNLLYRALDKEGIDAKDVNVIQLQPD--- 174
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ + + + W+P +N + + + + R+ + + P
Sbjct: 175 -EAQPAFESGSVDAWAIWDPFISLHTVNKRAKVIADGELLNVSSPEFLIARTKFAKEHPE 233
Query: 241 ISRLL-----KNIKFSVALENEMMKLILNNKQDRQFVGRT 275
+ K + +E +K+ + K+ + +
Sbjct: 234 LVEKFLKVYEKARVWQDENLDEAIKIYTSAKKIDAEIVKE 273
>gi|213971166|ref|ZP_03399284.1| taurine ABC transporter, periplasmic taurine-binding protein
[Pseudomonas syringae pv. tomato T1]
gi|301382295|ref|ZP_07230713.1| taurine ABC transporter, periplasmic binding protein [Pseudomonas
syringae pv. tomato Max13]
gi|302058534|ref|ZP_07250075.1| taurine ABC transporter, periplasmic binding protein [Pseudomonas
syringae pv. tomato K40]
gi|302132201|ref|ZP_07258191.1| taurine ABC transporter, periplasmic binding protein [Pseudomonas
syringae pv. tomato NCPPB 1108]
gi|213924035|gb|EEB57612.1| taurine ABC transporter, periplasmic taurine-binding protein
[Pseudomonas syringae pv. tomato T1]
Length = 325
Score = 46.0 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 35/297 (11%), Positives = 76/297 (25%), Gaps = 34/297 (11%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
K+ LT S++ A A D + + + Y+ K
Sbjct: 1 MKLHFSLRLLTALSLTGATFLAQAADFTVAYQTTVDP-------AKVAQADNAYE---KA 50
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ +R N I ++ + L +++A
Sbjct: 51 TDSKIAWRKFDNGADVITAIASGDVQIGYLGSSPFTAAATRK---LPVETFLIATQIGAA 107
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
+ ++L K + + G+ +L + ++ +
Sbjct: 108 EALVARNGSGINSPQDLIGKKIAVPFVSTGHYSLLAALKQWNIDPAKVTILNLAPP---- 163
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I + W+P + L E++ G + +VR D+ K P
Sbjct: 164 AIAAAWKRGDIDATYVWDPALGVAKETGKVLITSGELAKVGAPTFDAWIVRKDFASKHPE 223
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW--LIGVTTFD 295
+ + + +QD + +P + L G D
Sbjct: 224 VVKAFAKVTLD---------AYAQYRQDPAA----WI-ANPANVDKLTRLSGAKASD 266
>gi|307708093|ref|ZP_07644561.1| iron ABC transporter, iron-binding protein [Streptococcus mitis
NCTC 12261]
gi|307615878|gb|EFN95083.1| iron ABC transporter, iron-binding protein [Streptococcus mitis
NCTC 12261]
Length = 346
Score = 46.0 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 39/283 (13%), Positives = 85/283 (30%), Gaps = 41/283 (14%)
Query: 1 MYKILAVC----LFLTTFSISY------ARDADSCTPVRFADTGWTDIAATTAMTSVILE 50
M KIL +FL+ S + + DS + + + S E
Sbjct: 1 MKKILFFLSCGWIFLSLSGCSSPIEAETSAEKDSDNTLVVYSPN-PEDLIEETIPSF--E 57
Query: 51 EILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPS-----------LEKFIAPYLEEGS 99
E G K ++ + F+ + + + E +I+ ++
Sbjct: 58 EKYGIKVDLVQASTGELFKKAEAERESPVADVIFGGSYALFSSNEKLFEPYISQENDQII 117
Query: 100 IKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNE--------- 150
+ + Y L V+ + + I Y L K+ G +
Sbjct: 118 PEYQNKTGFYTPYTLDVSVIIANSALTKDIKIEGYNDLLNPKLKGKIATADPSNASSAFA 177
Query: 151 ------GNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWE--PHP 202
+Q + + F L++ +S S + + + AV L++E
Sbjct: 178 QLTNMLVDQGGYENEQAWTYVKNLFTLVDGKIASSSSNVYKAVADGEMAVGLTYEDPALK 237
Query: 203 INSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
+ +D + +E + F + V + +++ L
Sbjct: 238 LLNDGVDVKVIYPKEGTVFLPGNAAIVKNAKHMENAKKFIDFL 280
>gi|206577779|ref|YP_002235951.1| lipoprotein NlpA [Klebsiella pneumoniae 342]
gi|206566837|gb|ACI08613.1| lipoprotein NlpA [Klebsiella pneumoniae 342]
Length = 269
Score = 46.0 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 21/249 (8%), Positives = 59/249 (23%), Gaps = 7/249 (2%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL 62
+ A + + + + ++ + + + +E G +
Sbjct: 6 RAAAAVMLAGLALVGCDQKGNEAKHIKVGVINGAEQDV-AEVAKKVAKEKYGLDVELVGF 64
Query: 63 AVPVTFRSLKN-KGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ + N +D + P LE+ + A Y + V
Sbjct: 65 SGSLLPNESTNAGDLDANVFQHRPFLEQDNKAHNYHLVAVGNTFVFPMAGYSRKIKSVAE 124
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPG-NEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ A + + + + L
Sbjct: 125 LQDGATIAIPNDPTNLGRALLLLQKEKLITLKAGTGLLPTAVDITDNPHNLKIMELEG-- 182
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+Q+ R + V + + + + G I V +V + N
Sbjct: 183 AQLPRVLDDPKVDVAIISTTY--LQQTGLSPVRDGIFIEDKNSPYVNIIVTREDNKDAEN 240
Query: 241 ISRLLKNIK 249
+ +++ +
Sbjct: 241 VKEFMQSYQ 249
>gi|328794191|ref|XP_003252014.1| PREDICTED: hypothetical protein LOC100578648, partial [Apis
mellifera]
Length = 602
Score = 46.0 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 12/109 (11%), Positives = 31/109 (28%), Gaps = 10/109 (9%)
Query: 190 NIPAVFLSWEPHPINSDLNIHYLPGGEEI--------SGFGEASVYTVVRSDYLDKCPNI 241
+ VFL W P + + + + +V +
Sbjct: 267 DRSLVFLHWTPSTVIPNERDFVSIDFPRCGATSSEIGCKYESNRLTKLVWARLEYAAKLA 326
Query: 242 SRLLKNIKFSVALENEMMKLILNNK-QDRQFVGRTMLRTH-PDLLKNWL 288
+ KF+ + +++ + + + + LR + L W+
Sbjct: 327 YEAINRAKFTREMYEDLIDRRNRDSSMNEEEIACDWLRENLNYTLDAWM 375
>gi|328782524|ref|XP_397038.4| PREDICTED: hypothetical protein LOC413596 [Apis mellifera]
Length = 1326
Score = 46.0 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 12/109 (11%), Positives = 31/109 (28%), Gaps = 10/109 (9%)
Query: 190 NIPAVFLSWEPHPINSDLNIHYLPGGEEI--------SGFGEASVYTVVRSDYLDKCPNI 241
+ VFL W P + + + + +V +
Sbjct: 267 DRSLVFLHWTPSTVIPNERDFVSIDFPRCGATSSEIGCKYESNRLTKLVWARLEYAAKLA 326
Query: 242 SRLLKNIKFSVALENEMMKLILNNK-QDRQFVGRTMLRTH-PDLLKNWL 288
+ KF+ + +++ + + + + LR + L W+
Sbjct: 327 YEAINRAKFTREMYEDLIDRRNRDSSMNEEEIACDWLRENLNYTLDAWM 375
>gi|194173373|gb|ACF34409.1| venus kinase receptor [Apis mellifera]
Length = 1238
Score = 46.0 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 12/109 (11%), Positives = 31/109 (28%), Gaps = 10/109 (9%)
Query: 190 NIPAVFLSWEPHPINSDLNIHYLPGGEEI--------SGFGEASVYTVVRSDYLDKCPNI 241
+ VFL W P + + + + +V +
Sbjct: 250 DRSLVFLHWTPSTVIPNERDFVSIDFPRCGATSSEIGCKYESNRLTKLVWARLEYAAKLA 309
Query: 242 SRLLKNIKFSVALENEMMKLILNNK-QDRQFVGRTMLRTH-PDLLKNWL 288
+ KF+ + +++ + + + + LR + L W+
Sbjct: 310 YEAINRAKFTREMYEDLIDRRNRDSSMNEEEIACDWLRENLNYTLDAWM 358
>gi|268590501|ref|ZP_06124722.1| hypothetical protein PROVRETT_06698 [Providencia rettgeri DSM 1131]
gi|291314087|gb|EFE54540.1| hypothetical protein PROVRETT_06698 [Providencia rettgeri DSM 1131]
Length = 273
Score = 46.0 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 30/286 (10%), Positives = 78/286 (27%), Gaps = 27/286 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDAD-SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+ I V L T ++ + + ++ ++ + + +E G +
Sbjct: 5 LKSIAVVGALLGTLVLTGCGEKEKDANSIKVGVIMGKELEV-AEVAQKVAKEKYGLNVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V +L ID F + IK L
Sbjct: 64 VSFNDFVLPNEALSKGDIDA---------NAFQHKPYLDQQIKDRNYKLVPVGNTFIYPI 114
Query: 119 VGFALGIKSYQDIAKYKKEL---GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
++ IKS ++A + G Q ++ + + ++E
Sbjct: 115 AAYSKKIKSVDELADGSQIALPNDPTNLGRSLLLLQQQGLIKLKDGTGLMPTVLDVVENP 174
Query: 176 ELASFSQIR-----RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
+ F ++ R + A+ + ++ + G + V +V
Sbjct: 175 KDLKFVELEAPQLPRALDDQKIALAIINTTWASSATPKLTPAKDGLFVEDKDSPYVNIIV 234
Query: 231 RSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
+ N+ + ++ + S + N+ + + +
Sbjct: 235 AREDNKDSENVKKFIQAYQ-SDEVANKAN-EVFDGG-----AVKGW 273
>gi|254976535|ref|ZP_05273007.1| ABC transporter, substrate-binding protein [Clostridium difficile
QCD-66c26]
gi|255093920|ref|ZP_05323398.1| ABC transporter, substrate-binding protein [Clostridium difficile
CIP 107932]
gi|255315672|ref|ZP_05357255.1| ABC transporter, substrate-binding protein [Clostridium difficile
QCD-76w55]
gi|255518333|ref|ZP_05386009.1| ABC transporter, substrate-binding protein [Clostridium difficile
QCD-97b34]
gi|255651450|ref|ZP_05398352.1| ABC transporter, substrate-binding protein [Clostridium difficile
QCD-37x79]
gi|260684510|ref|YP_003215795.1| ABC transporter substrate-binding protein [Clostridium difficile
CD196]
gi|260688168|ref|YP_003219302.1| ABC transporter substrate-binding protein [Clostridium difficile
R20291]
gi|260210673|emb|CBA65419.1| ABC transporter, substrate-binding protein [Clostridium difficile
CD196]
gi|260214185|emb|CBE06429.1| ABC transporter, substrate-binding protein [Clostridium difficile
R20291]
Length = 319
Score = 46.0 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 43/276 (15%), Positives = 87/276 (31%), Gaps = 16/276 (5%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+ K+L LT + S A A + ++ T + + + S+I ++ + K
Sbjct: 3 LKKLLIGITILTLATASLAGCAKKNNGEKLSEINLTYVKSPLNVPSIIQKQDDLFGKEFK 62
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ V F + E L S + A N K + +
Sbjct: 63 KDNIKVNFHEITTGPEQTQALAAG---EIDFLHALGGTSALIAASNGVELKILNTYSRSP 119
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
I + + K +L K G +Q ++ ++ S+ +
Sbjct: 120 KGFMILTNNNSIKSAADLVGKKVAGPKGTILHQVLISALDKEGLSMDDVEFVN----MGI 175
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ + V L P + + + L E G + T V +D+ +K P
Sbjct: 176 PEASAALSDGSVDVALIAGPAALKAMKSGSKLVANGEGLVDGI--IVTAVSTDFAEKHPE 233
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDR-QFVGRT 275
I + E E ++ + NN + + V +
Sbjct: 234 IVERFMKV------EKETLEYVNNNFDEAMEKVAKE 263
>gi|254471997|ref|ZP_05085398.1| sulfonate ABC transporter, periplamic sulfonate-binding protein
[Pseudovibrio sp. JE062]
gi|211959199|gb|EEA94398.1| sulfonate ABC transporter, periplamic sulfonate-binding protein
[Pseudovibrio sp. JE062]
Length = 339
Score = 46.0 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 33/285 (11%), Positives = 77/285 (27%), Gaps = 30/285 (10%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL----GYKTNI 59
+ V + + + A A + + +T AA V E+ G
Sbjct: 7 LSGVLMGAAVLTGTLATTASAEEKITVGALRFTSHAAN----FVAFEKGYFKDAGLDVEF 62
Query: 60 KLLA-VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
K ++ + +D + L + + E M+ +
Sbjct: 63 KFFQAAQPMALAIASGDVDFGLTAISGGLISLADKGAVKVIGGALQEEDGIDGQMILASK 122
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ G+K+ D+ + G+ + + + F K ++ +
Sbjct: 123 AAYDAGLKTPADLKGKSFGVTT------AGSSFHYMAHKIADKEGFDRKDIKIRPLQK-- 174
Query: 179 SFSQIRRDQRNNIPAVFLSWE--PHPINSDLNIHYLPGGEEISGF-GEASVYTV-VRSDY 234
+ ++ +W PH + ++S + V TV +
Sbjct: 175 -VGAVIGALKSGQID---AWSIVPHIAKGLAKSPQVEVIGKVSDYVPNYQVTTVFTSTKN 230
Query: 235 LDKCPNISR-LLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLR 278
P + + L A N + +K M++
Sbjct: 231 TSNNPELVKTFLGAYSKGAADFNAAL----VDKSAGDAAAEDMVK 271
>gi|118478252|ref|YP_895403.1| alkanesulfonates-binding protein [Bacillus thuringiensis str. Al
Hakam]
gi|196043433|ref|ZP_03110671.1| putative sulfonate ABC transporter, sulfonate-binding protein
[Bacillus cereus 03BB108]
gi|118417477|gb|ABK85896.1| alkanesulfonates-binding protein [Bacillus thuringiensis str. Al
Hakam]
gi|196025742|gb|EDX64411.1| putative sulfonate ABC transporter, sulfonate-binding protein
[Bacillus cereus 03BB108]
Length = 328
Score = 46.0 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 33/287 (11%), Positives = 79/287 (27%), Gaps = 31/287 (10%)
Query: 2 YKILAVCLFLTTFSISY----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL---G 54
+K+L+ L ++ F A V+ EE G
Sbjct: 5 FKVLSFTLAISLFLFGCEKSTASSKKEDVTVQIGIQQGLSPLLLAQ-KKGWFEEEFKKEG 63
Query: 55 YKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
K P F ++ + +D P + A ++ +
Sbjct: 64 VKVKWTEFQSGPPYFEAIASNRLDFGEVGNSPVISAQAAGIEF---TEIANTSYARKGTG 120
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+ V +K EL K + G+ + ++ K +I+
Sbjct: 121 ILVQKDSKITSVK----------ELKGKKIAVAKGSSAFNLLYRALDKEGIDAKDVNVIQ 170
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+ + + + W+P +N + + + + R+
Sbjct: 171 LQPD----EAQPAFESGSVDAWAIWDPFISLHTVNKGAKVITDGEILNVSSPEFLIARTK 226
Query: 234 YLDKCPN-ISRLL----KNIKFSVALENEMMKLILNNKQDRQFVGRT 275
+ + P + + L K + +E +K+ + K+ + +
Sbjct: 227 FAKEHPELVEKFLKVYEKARVWQDENLDEAIKIYTSAKKIDAEIVKE 273
>gi|123443456|ref|YP_001007429.1| DL-methionine transporter substrate-binding subunit [Yersinia
enterocolitica subsp. enterocolitica 8081]
gi|332160621|ref|YP_004297198.1| DL-methionine transporter substrate-binding subunit [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|122090417|emb|CAL13285.1| putative lipoprotein [Yersinia enterocolitica subsp. enterocolitica
8081]
gi|318606900|emb|CBY28398.1| methionine ABC transporter substrate-binding protein [Yersinia
enterocolitica subsp. palearctica Y11]
gi|325664851|gb|ADZ41495.1| DL-methionine transporter substrate-binding subunit [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|330860904|emb|CBX71184.1| D-methionine-binding lipoprotein metQ [Yersinia enterocolitica
W22703]
Length = 271
Score = 45.6 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 29/283 (10%), Positives = 74/283 (26%), Gaps = 24/283 (8%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K +A L P ++ + + + ++ G +
Sbjct: 5 FKSIAAVSALIGTLALVGCGPAEKDPNHIKVGVIVGAEQQV-AEVAQKVAKDKYGLDVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V +L ID+ P L++ I + + A Y +
Sbjct: 64 VTFNDYVLPNEALSKGDIDLNAFQHKPYLDQQIKDRGYKLVSVGNSFVYPIAGYSKKI-K 122
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
L S + LG + +E ++ + + ++E +
Sbjct: 123 SLEELQPGSQVALPNDPTNLGRSLLLLEK-----VGLIKLKDGVGLLPTVLDVVENPKNL 177
Query: 179 SFSQIR-----RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
++ R + A+ + + S + + G + V +V +
Sbjct: 178 KLVELEAPQLPRSLDDQQIALAIINTTYA--SQIGLTPAKDGLFVEDKESPYVNLIVARE 235
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
N+ + ++ + N+ N +
Sbjct: 236 DNKDAENVKKFVQAYQ--SDEVNDAANKAFNGG-----AVKGW 271
>gi|229197098|ref|ZP_04323835.1| aliphatic sulfonates-binding protein [Bacillus cereus m1293]
gi|228586408|gb|EEK44489.1| aliphatic sulfonates-binding protein [Bacillus cereus m1293]
Length = 328
Score = 45.6 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 30/287 (10%), Positives = 78/287 (27%), Gaps = 31/287 (10%)
Query: 2 YKILAVCLFLTTFSISY----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL---G 54
+K+L+ L ++ F A V+ EE G
Sbjct: 5 FKVLSFALAISLFLFGCEKSTASSKKEDVTVQIGIQQGLSPLLLAQ-KKGWFEEEFKKEG 63
Query: 55 YKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
K P F ++ + +D P + A ++ +
Sbjct: 64 VKVKWTEFQSGPPYFEAIASNRLDFGEVGNSPVISAQAAGIEF---TEIANTSYARKGTG 120
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+ V +K + K + G+ + +++ + K +I+
Sbjct: 121 ILVQKDSKITSVKDLKG----------KKIAVAKGSSAFNLLYRVLDKEGINAKDVNVIQ 170
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+ + + + W+P +N + + + + R+
Sbjct: 171 LQPD----EAQPAFESGSVDAWAIWDPFISLHTVNKGAKVITDGEQLNVSSPEFLIARTK 226
Query: 234 YLDKCPNISRLL-----KNIKFSVALENEMMKLILNNKQDRQFVGRT 275
+ + P + K + +E +K+ + K+ + +
Sbjct: 227 FAKEHPELVEKFLKVYEKARVWQDENLDEAIKIYTSAKKIDADIVKE 273
>gi|228915511|ref|ZP_04079100.1| aliphatic sulfonates-binding protein [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228844158|gb|EEM89218.1| aliphatic sulfonates-binding protein [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
Length = 328
Score = 45.6 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 34/287 (11%), Positives = 79/287 (27%), Gaps = 31/287 (10%)
Query: 2 YKILAVCLFLTTFSISY----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL---G 54
+K+L+ L ++ F A V+ EE G
Sbjct: 5 FKVLSFTLAISLFLFGCEKSTASSKKEDVTVQIGIQQGLSPLLLAQ-KKGWFEEEFKKEG 63
Query: 55 YKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
K P F ++ + +D P + A ++ +
Sbjct: 64 VKVKWTEFQSGPPYFEAIASNRLDFGEVGNSPVISAQAAGIGF---TEIANTSYARKGTG 120
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+ V IK EL K + G+ + ++ + K +I+
Sbjct: 121 ILVQKDSKITSIK----------ELKGKKIAVAKGSSAFNLLYRALDKEGINAKDVNVIQ 170
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+ + + + W P +N + + + + R+
Sbjct: 171 LQPD----EAQPAFESGSVDAWAIWNPFISLHTVNKGAKVITDGERLNVSSPEFLIARTK 226
Query: 234 YLDKCPN-ISRLL----KNIKFSVALENEMMKLILNNKQDRQFVGRT 275
+ + P + + L K + +E +K+ + K+ + +
Sbjct: 227 FAKEHPELVEKFLKVYEKARVWQDENLDEAIKIYTSAKKIDAEIVKE 273
>gi|270264395|ref|ZP_06192661.1| transporter [Serratia odorifera 4Rx13]
gi|270041531|gb|EFA14629.1| transporter [Serratia odorifera 4Rx13]
Length = 331
Score = 45.6 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 34/281 (12%), Positives = 71/281 (25%), Gaps = 35/281 (12%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-I 59
M L +T +S + V A + A + G +
Sbjct: 1 MASKLFSLRGVTLLVLSLGAASAQAVDVTVAYQTSAEPAKVAQ-AENSFAKQSGATVDWR 59
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
K + R+L + + I P E + + G+ L V
Sbjct: 60 KFDSGSSVLRALASGDVQIGNIGSSPLAVAASQKLPIE---VFLIASQLGSSEALVVKKD 116
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
K ++L K + + + +L + + + +++
Sbjct: 117 I------------KGPQDLIGKRIAVPFISTTHYSLLASLKHWGIKPEQVKILNLQPP-- 162
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKC 238
I + W P L ++ +G ++ VVR D+ +K
Sbjct: 163 --AIAAAWQRGDIDGAYVWAPVVNELAKQGKVLTDSAQVGEWGAPTLDVWVVRKDFAEKH 220
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
P + + + Q L+
Sbjct: 221 PEVVTAFAA--------SALNAQKAYLAQP-----EQWLKD 248
>gi|229018231|ref|ZP_04175103.1| aliphatic sulfonates-binding protein [Bacillus cereus AH1273]
gi|229024415|ref|ZP_04180866.1| aliphatic sulfonates-binding protein [Bacillus cereus AH1272]
gi|228736876|gb|EEL87420.1| aliphatic sulfonates-binding protein [Bacillus cereus AH1272]
gi|228742999|gb|EEL93127.1| aliphatic sulfonates-binding protein [Bacillus cereus AH1273]
Length = 328
Score = 45.6 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 29/253 (11%), Positives = 69/253 (27%), Gaps = 27/253 (10%)
Query: 3 KILAVCLFLTTFSISY----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL---GY 55
KIL+ L ++ F + A ++ EE G
Sbjct: 6 KILSFALVISLFLLGCEKSTASSKKEEVTIQIGIQQGLSPLLLAQ-KKGWFEEEFKKDGV 64
Query: 56 KTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
K P F ++ + +D P + A ++ + +
Sbjct: 65 KVKWTEFQSGPPYFEAIASNRLDFGEVGNSPVISAQAAGIEF---TEIANTSYARKGTGI 121
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
V +K + K + G+ + ++ KG +I+
Sbjct: 122 LVQKDSKITSVKDLKG----------KKIAVAKGSSAFNLLYRALDKEGIDAKGVNVIQL 171
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDY 234
+ + + + W+P +N + + + + + R+ +
Sbjct: 172 QPD----EAQPAFESGSVDAWAIWDPFISLHTVNKGAKVIADGETLNVSSPEFLIARTKF 227
Query: 235 LDKCPN-ISRLLK 246
+ P + + LK
Sbjct: 228 AKEHPELVEKFLK 240
>gi|167840222|ref|ZP_02466906.1| taurine ABC transporter, periplasmic binding protein [Burkholderia
thailandensis MSMB43]
Length = 336
Score = 45.6 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 34/281 (12%), Positives = 72/281 (25%), Gaps = 32/281 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-I 59
+ +IL + + V A D A E+ G+K N
Sbjct: 3 LKRILVAATLAVAVFSAVRSQSAWADTVNVAYQYGADPAKLAQ-AGAAYEKATGWKINWR 61
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ + +L + + I P + + L G L V
Sbjct: 62 RFDSGADVVAALASGDVQIGDVGQSPFTAAVSRGVPIQAVVLNA---LTGVSEALVVRG- 117
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+L K + + +L + + + +++
Sbjct: 118 ---------GAHIDKPADLVGKTIATPYASNCHYALLAALKHWGIDAQRVKIVNLGP--- 165
Query: 180 FSQIRRDQRNNIPAVFLSWEPH-PINSDLNIHYLPGGEEISGFGEASVY-TVVRSDYLDK 237
++I + +W+P L E+ +G + VRSD+
Sbjct: 166 -TEIVAAWERGVIDAAYTWDPALGRAKASGGKVLVDSAEVGKWGAPTFDLWAVRSDFAQA 224
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQ-----DRQFVG 273
P + V++ + + N + Q
Sbjct: 225 HP---DFVSKF---VSVTTQAIADYRANGRAWTSASPQVAA 259
>gi|257483868|ref|ZP_05637909.1| alkanesulfonate transporter substrate-binding subunit [Pseudomonas
syringae pv. tabaci ATCC 11528]
gi|289624887|ref|ZP_06457841.1| alkanesulfonate transporter substrate-binding subunit [Pseudomonas
syringae pv. aesculi str. NCPPB3681]
gi|289650732|ref|ZP_06482075.1| alkanesulfonate transporter substrate-binding subunit [Pseudomonas
syringae pv. aesculi str. 2250]
gi|330869216|gb|EGH03925.1| alkanesulfonate transporter substrate-binding subunit [Pseudomonas
syringae pv. aesculi str. 0893_23]
gi|331012042|gb|EGH92098.1| alkanesulfonate transporter substrate-binding subunit [Pseudomonas
syringae pv. tabaci ATCC 11528]
Length = 311
Score = 45.6 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 33/253 (13%), Positives = 68/253 (26%), Gaps = 24/253 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSV--ILEEIL-GYKT 57
M + L + AD +R + T + +LE+ K
Sbjct: 1 MKPFTFIAAILAFSGLFGTAAADEPDTLRIGYQK---GSITLVLAKEHGLLEKRFAATKV 57
Query: 58 N-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
I+ A P +L +DI P + +A
Sbjct: 58 KWIEFPAGPQMLEALNIGSLDIASTGDIPPIFAQVAGADL-------------VYIGAEP 104
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ + EL + ++ G+ + +L ++N + K + I +
Sbjct: 105 AKPQAETILVRNESPLHSVAELKGRKVALQKGSSSHNVVLRLLNKAGLTFKDIQPIYLTP 164
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
+ R N + W+P+ + H YT R+
Sbjct: 165 ----ADARAAFENGSVDAWAIWDPYYSIALNEGHSRLLANGEGLGLSGPFYTARRAFAEK 220
Query: 237 KCPNISRLLKNIK 249
+ ++L +
Sbjct: 221 NAAFVQQVLDELT 233
>gi|290511751|ref|ZP_06551119.1| D-methionine transport system substrate-binding protein [Klebsiella
sp. 1_1_55]
gi|289775541|gb|EFD83541.1| D-methionine transport system substrate-binding protein [Klebsiella
sp. 1_1_55]
Length = 269
Score = 45.6 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 21/249 (8%), Positives = 59/249 (23%), Gaps = 7/249 (2%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL 62
+ A + + + + ++ + + + +E G +
Sbjct: 6 RAAAAVMLAGLALVGCDQKGNEAKHIKVGVINGAEQDV-AEVAKKVAKEKYGLDVELVGF 64
Query: 63 AVPVTFRSLKN-KGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ + N +D + P LE+ + A Y + V
Sbjct: 65 SGSLLPNESTNAGDLDANVFQHRPFLEQDNKAHNYHLVAVGNTFVFPMAGYSRKIKSVAE 124
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPG-NEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ A + + + + L
Sbjct: 125 LKDGATIAIPNDPTNLGRALLLLQKEKLITLKAGTGLLPTAVDITDNPRNLKIMELEG-- 182
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+Q+ R + V + + + + G I V +V + N
Sbjct: 183 AQLPRVLDDPKVDVAIISTTY--LQQTGLSPVRDGIFIEDKNSPYVNIIVTREDNKDAEN 240
Query: 241 ISRLLKNIK 249
+ +++ +
Sbjct: 241 VKEFMQSYQ 249
>gi|262394275|ref|YP_003286129.1| ABC-type tungstate transport system binding protein [Vibrio sp.
Ex25]
gi|262337869|gb|ACY51664.1| ABC-type tungstate transport system binding protein [Vibrio sp.
Ex25]
Length = 272
Score = 45.6 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 37/279 (13%), Positives = 69/279 (24%), Gaps = 27/279 (9%)
Query: 1 MYKI-LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYK 56
M KI L + T A A VR A T + + +L E+ GYK
Sbjct: 1 MKKIALTLAATSITLVSYSAFSAQDGEHVRLAT---TTSTYHSGLLDYLLPQFEKDTGYK 57
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP---------YLEEGSIKLVAENL 107
++ + +N +D+ M + + F+ + I +
Sbjct: 58 VDVIAAGTGKALKMGENGDVDLVMTHAPKAEGTFVEKGYGVLPRKLMYNDFVIVGPKADP 117
Query: 108 QGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
K V DV + K+ I++ K E G +I + +
Sbjct: 118 AKIKNDEGVLDVFKEIANKNATFISRGDDSGTHKK---EMGFWAQTKIEPNFGGYRSVGQ 174
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
G + + L ++
Sbjct: 175 GMGPTLNMASEMQG--YTMTDRGT-WLAYQNKLDLEILFQGDEKLFNPYQVILVNPERYP 231
Query: 228 TV---VRSDYLDK--CPNISRLLKNIKFSVALENEMMKL 261
T+ + D P L+ + +
Sbjct: 232 TINYQGAKAFSDWLVNPRGQELINGFRLNGKQLFVANAE 270
>gi|229179203|ref|ZP_04306557.1| aliphatic sulfonates-binding protein [Bacillus cereus 172560W]
gi|228604101|gb|EEK61568.1| aliphatic sulfonates-binding protein [Bacillus cereus 172560W]
Length = 328
Score = 45.6 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 32/285 (11%), Positives = 75/285 (26%), Gaps = 32/285 (11%)
Query: 2 YKILAVCLFLTTFSISY----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL---G 54
+KIL+ L ++ + A ++ EE G
Sbjct: 5 FKILSFALAISVCLLGCEKSTASSKKEDVTIQIGIQQGLSPLLLAK-KKGWFEEEFKKEG 63
Query: 55 YKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
K P F ++ + +D P + A ++ +
Sbjct: 64 VKVKWTEFQSGPPYFEAIASNRLDFGEVGNSPVISAQAAGIGF---TEIANTSYARKGTG 120
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+ V +K + K + G+ + ++ K +I+
Sbjct: 121 ILVQKDSKIASVKDLKG----------KKIAVAKGSSAFNLLYRALDKEGIDAKDVNVIQ 170
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+ + + + W+P LN + + + + + R+
Sbjct: 171 LQPD----EAQPAFESGSVDAWAIWDPFISLHTLNKGAKVIADGETLNVSSPEFLITRTK 226
Query: 234 YLDKCPNISRLL-----KNIKFSVALENEMM-KLILNNKQDRQFV 272
+ + P + K + A +E + K D + V
Sbjct: 227 FAKEHPELVEKFLKVYEKARVWQDANLDEAIKVYTSVKKIDAEIV 271
>gi|118467000|ref|YP_880626.1| LpqZ protein [Mycobacterium avium 104]
gi|118168287|gb|ABK69184.1| LpqZ protein [Mycobacterium avium 104]
Length = 289
Score = 45.6 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 31/297 (10%), Positives = 65/297 (21%), Gaps = 27/297 (9%)
Query: 1 MY--KILAVCLFLTTFSISYARDADSCT---PVRFADTGWTDIAATTAMTSVILEEILGY 55
M +++A L D V + L G+
Sbjct: 1 MRIGRLVAPLLTALLAVTGCTTDTGDRRAHAEVVVGSRPDASSTLLAGIYVAAL-RSYGF 59
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
P L + + + L+ + + +
Sbjct: 60 AARPATAGDPTA--QLDSGAFTVVPAFTGRVLQALQPGATAMSDKDVYRAMIAALPEGIV 117
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF------ 169
D A K +++ + + + ++
Sbjct: 118 AGDYTTAAEDKPVLLVSRSTAQAWGGSDVSADLSTLPRHCDGLVVGTVAGRPAPPAVGSC 177
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV 229
RL E + + R + W + + +V V
Sbjct: 178 RLAAPREFPDAATMFAAVRAGQ--LTAGWTTTADPGTPADLVALADGKPALIRAENVVPV 235
Query: 230 VRSDYLDKCP-----NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHP 281
R + L + ++ +L A +M + + D Q V L HP
Sbjct: 236 YRRNALSERQLLAINEVAGVL-----DTAALVDMRRQVDT-GADPQAVAGGWLAEHP 286
>gi|91223735|ref|ZP_01258999.1| hypothetical protein V12G01_18362 [Vibrio alginolyticus 12G01]
gi|91191227|gb|EAS77492.1| hypothetical protein V12G01_18362 [Vibrio alginolyticus 12G01]
Length = 272
Score = 45.6 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 7/97 (7%)
Query: 1 MYKI-LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYK 56
M KI L + T A A VR A T + + +L E+ GYK
Sbjct: 1 MKKIALTLAATSITLVSYSAFSAQDGEHVRLAT---TTSTYHSGLLDYLLPQFEKDTGYK 57
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP 93
++ + +N +D+ M + + F+
Sbjct: 58 VDVIAAGTGKALKMGENGDVDLVMTHAPKAEGAFVEK 94
>gi|333010798|gb|EGK30224.1| taurine ABC transporter, periplasmic binding protein [Shigella
flexneri K-272]
gi|333021296|gb|EGK40549.1| taurine ABC transporter, periplasmic binding protein [Shigella
flexneri K-227]
Length = 294
Score = 45.6 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 1/74 (1%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I + W P + + L E++ +G ++ VR D+ +K P
Sbjct: 134 AIIAAWQRGDIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWGVRKDFAEKHPE 193
Query: 241 ISRLLKNIKFSVAL 254
+ +
Sbjct: 194 VVKAFAKSAIDAQQ 207
>gi|307131964|ref|YP_003883980.1| Urea carboxylase-related ABC transporter periplasmic
substrate-binding protein [Dickeya dadantii 3937]
gi|306529493|gb|ADM99423.1| Urea carboxylase-related ABC transporter, periplasmic
substrate-binding protein [Dickeya dadantii 3937]
Length = 334
Score = 45.6 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 35/249 (14%), Positives = 69/249 (27%), Gaps = 18/249 (7%)
Query: 7 VCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPV 66
+ + TPV +GWT A T + + G K ++K++
Sbjct: 25 TVSLMAVCLAAAVSAQAEETPVAIGISGWTGFAPLTLADKAGIFQQHGLKVDLKMIPQKD 84
Query: 67 TFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIK 126
++ + I + + + + ++L LAV +
Sbjct: 85 RHLAVASGAIQCAATTVETYVSWAASGVVLKQIVQLDKSYGAD---GLAVRND------- 134
Query: 127 SYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRD 186
I G I PG + +++ N SLK ++ S +
Sbjct: 135 ----IRSVHDLKGKTIGVDAPGTSPYFALAWILDKNGMSLKDVKVATLSP----QAAAQA 186
Query: 187 QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLK 246
+S+EP+ + D+L K P + + L
Sbjct: 187 FVAGQNDAAMSYEPYLSTVRQQPDKGKILATTLDYPMVMDTLGCTPDFLKKHPQVGKALV 246
Query: 247 NIKFSVALE 255
+ F
Sbjct: 247 DSYFDALAM 255
>gi|260768406|ref|ZP_05877340.1| ABC-type tungstate transport system binding protein [Vibrio
furnissii CIP 102972]
gi|260616436|gb|EEX41621.1| ABC-type tungstate transport system binding protein [Vibrio
furnissii CIP 102972]
gi|315180117|gb|ADT87031.1| ABC-type tungstate transport system, permease component [Vibrio
furnissii NCTC 11218]
Length = 271
Score = 45.6 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 7/97 (7%)
Query: 1 MYKILAVCLFLTTFSIS-YARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYK 56
M K++ + +S A AD +R A T + + +L E GYK
Sbjct: 1 MKKVIFSLTASSLLLVSYSASSADDVQRIRLAT---TTSTYHSGLLDYLLPKFEHDSGYK 57
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP 93
++ + +N +D+ M + + F+
Sbjct: 58 VDVIAAGTGKALKMGENGDVDLVMTHAPKAEASFVEH 94
>gi|269968584|ref|ZP_06182586.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
gi|269826795|gb|EEZ81127.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
Length = 272
Score = 45.6 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 39/279 (13%), Positives = 70/279 (25%), Gaps = 27/279 (9%)
Query: 1 MYKI-LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYK 56
M KI L + T A A VR A T + + +L E+ GYK
Sbjct: 1 MKKIALTLAATSITLVSYSAFSAQDGEHVRLAT---TTSTYHSGLLDYLLPQFEKDTGYK 57
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKF-------IAPYLEEGSIKLVAENLQG 109
++ + +N +D+ M + + F + L +V
Sbjct: 58 VDVIAAGTGKALKMGENGDVDLVMTHAPKAEGAFVEKGYGVLPRKLMYNDFVIVGPKADP 117
Query: 110 A--KYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
A K V DV + K+ I++ K E G +I + +
Sbjct: 118 ATIKNDEGVLDVFKEIANKNATFISRGDDSGTHKK---EMGFWAQTKIEPNFGGYRSVGQ 174
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
G + + L ++
Sbjct: 175 GMGPTLNMASEMQG--YTMTDRGT-WLAYQNKLDLEILFQGDEKLFNPYQVILVNPERYP 231
Query: 228 TV---VRSDYLDK--CPNISRLLKNIKFSVALENEMMKL 261
T+ + D P L+ + +
Sbjct: 232 TINYQGAKAFSDWLVNPRGQELINGFRLNGKQLFVANAE 270
>gi|227327214|ref|ZP_03831238.1| putative taurine-binding periplasmic protein [Pectobacterium
carotovorum subsp. carotovorum WPP14]
Length = 322
Score = 45.6 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 37/265 (13%), Positives = 77/265 (29%), Gaps = 34/265 (12%)
Query: 14 FSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRSLK 72
+ S VR A +G + + L++ LG ++ +
Sbjct: 1 MTTSVLAAEKHPDEVRVAYSGGSQVLVLAKADGS-LQKALGAPVKWVQFASGADALNYFA 59
Query: 73 NKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIA 132
+ IDI P+ + +++V + A Y + GI + +DI
Sbjct: 60 SNAIDIANFGSSPATAGIVRKLP----VEIVGVSGVIATYERLI----AKTGITTLKDI- 110
Query: 133 KYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIP 192
K P + + I NK LI +++ +
Sbjct: 111 ------EGKRVAYPPNSTAQYALEAAIAVNKLDRSKITLIPL----RPAEMVAAWKRGDI 160
Query: 193 AVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY--TVVRSDYLDKCPN-ISRLLKNIK 249
W P + + + + +Y VVR + + P ++R L+ +
Sbjct: 161 DAGYVWAPFAQELEASAGHAIFATKDLQKDGYLIYNNYVVRKAFAQQYPETVARFLRVHQ 220
Query: 250 FSVALENEMMKLILNNKQDRQFVGR 274
+ + +QD +
Sbjct: 221 ----------QKVDEFRQDPEKAAA 235
>gi|258592782|emb|CBE69091.1| putative ABC transporter, substrate binding protein [NC10 bacterium
'Dutch sediment']
Length = 357
Score = 45.6 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 37/284 (13%), Positives = 68/284 (23%), Gaps = 43/284 (15%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTD-IAATTAMTSVILEEILGYKTN-IKLLA 63
C + FS ++ ++ VR T + A+ + + G + IK
Sbjct: 46 LACAAIFVFSCRRSQPPETMESVRMGYLPITSDASFFVAVEKGLFKAR-GLQVEPIKFET 104
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+L ID + A ++ I + K V
Sbjct: 105 SNQALEALIAGRIDATAIVALEAALALEANTPDQFRIIEMTAATADTKVHRIVVKT---- 160
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
K +L K G PG L +I F + I + Q
Sbjct: 161 -----DSPIKTLADLRGKKVGTFPG-SQMVVFLKLILGRYFDAEREVEIVQLKPPLQPQ- 213
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE----ISGFGEASVYTVVRSDYLDKCP 239
+ EP + + +VV + + P
Sbjct: 214 --ALESGQVDALFCLEPTGTLLESKGLARTISVNPLYEFIQKPFPTAVSVVSARMATEKP 271
Query: 240 NIS-RLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPD 282
+ R++ + L+ HP+
Sbjct: 272 KVVGRIIAGLT----------------------AAHQFLKAHPE 293
>gi|240949082|ref|ZP_04753432.1| outer membrane lipoprotein 2 precursor [Actinobacillus minor NM305]
gi|240296518|gb|EER47146.1| outer membrane lipoprotein 2 precursor [Actinobacillus minor NM305]
Length = 270
Score = 45.6 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 32/267 (11%), Positives = 63/267 (23%), Gaps = 18/267 (6%)
Query: 1 MYKILAVCLFLTTFSISY----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
+ KIL + L A A P++ + T + I +E G
Sbjct: 3 LKKILGIALVSALALTGCKEEKAATAAPAKPLKMGVMTGPEAQ-MTEVAVKIAKEKYGLD 61
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ + + F E +K L L
Sbjct: 62 VELVQFTEYT--------QPNAALQAGDLDANAFQTVPYLEQEMKDRGYKLAVIGNTLVW 113
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG---FRLIE 173
++ IK+ ++ + +I +IE
Sbjct: 114 PIAAYSKKIKNISELKDGATIAIPNNASNTARALLLLQANGLIKLKDPKNVFSTEQDIIE 173
Query: 174 ASELASFSQIRRDQRNNIP-AVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRS 232
Q + V L+ + + G + V VV
Sbjct: 174 NPRNIKIVQADTALLTRMLDDVDLAVINNTYAGQAGLSPDKDGIIVESKDSPYVNLVVSR 233
Query: 233 DYLDKCPNISRLLKNIKFSVALENEMM 259
+ P + LK+ + + + E +
Sbjct: 234 EDNKTHPRLQTFLKSFQ-TEEVYQEAL 259
>gi|153829782|ref|ZP_01982449.1| conserved hypothetical protein [Vibrio cholerae 623-39]
gi|148874761|gb|EDL72896.1| conserved hypothetical protein [Vibrio cholerae 623-39]
Length = 275
Score = 45.6 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 30/273 (10%), Positives = 72/273 (26%), Gaps = 18/273 (6%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYKT 57
M K + +SY+ + +R A T + + +L E+ GYK
Sbjct: 5 MKKTTFTLAAASLILVSYSASSADDARIRLAT---TTSTYDSGLLDYLLPKFEQDTGYKV 61
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
++ + +N +D+ M + + F+ KL+ +
Sbjct: 62 DVIATGTGKALKMGENGDVDLVMTHAPKAEASFVEAGFGVLPRKLMYNDFVVVGPESDPA 121
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL--DMINNNKFSLKGFRLIEAS 175
+ I + + ++ I + I N +
Sbjct: 122 KIADEKNIAKVFENIAKSGAVFISRGDDSGTHKKELGIWAQNKIEPNFGGYRSIGQGMGP 181
Query: 176 ELASFSQIRRD-QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDY 234
L S+++ + + + + + F V V Y
Sbjct: 182 TLNMASEMQAYTLTDRGTWLAYNNKLALKILFEG--------DKQLFNPYQVIIVNPERY 233
Query: 235 LDKCPNISRLLKNIKFSVALENEMMKLILNNKQ 267
+++ + +++ N Q
Sbjct: 234 PTTQYQAAKVFSDW-LVNPKGQQLINEFKVNGQ 265
>gi|332095140|gb|EGJ00172.1| D-methionine-binding lipoprotein metQ [Shigella boydii 5216-82]
Length = 271
Score = 45.6 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 26/283 (9%), Positives = 70/283 (24%), Gaps = 24/283 (8%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K A L D P ++ + + + ++ G +
Sbjct: 5 FKTFAAVGALIGSLALVGCGQDEKDPNHIKVGVIVGAEQQV-AEVAQKVAKDKYGLDVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V +L ID P L++ + + A Y +
Sbjct: 64 VTFNDYVLPNEALSKGDIDANAFQHKPYLDQQLKDRGYKLVAVGNTFVYPIAGYSKKIKS 123
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ + + + G ++ + + ++E S+
Sbjct: 124 LDELQDGSQVAVPNDPTNLGRSLLLLQKVG------LIKLKDGVGLLPTVLDVVENSKNL 177
Query: 179 SFSQIR-----RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
++ R + A+ + + S + + G + V +V +
Sbjct: 178 KIVELEAPQLPRSLDDAQIALAVINTTYA--SQIGLTPAKDGIFVEDKESPYVNLIVTRE 235
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
N+ + ++ + E + N +
Sbjct: 236 DNKDAENVKKFVQAYQ--SDEVYEAANKVFNGG-----AVKGW 271
>gi|227115197|ref|ZP_03828853.1| lipoprotein-28 precursor [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 270
Score = 45.6 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 27/281 (9%), Positives = 67/281 (23%), Gaps = 26/281 (9%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
++A + + ++S ++ + + + +E G + +
Sbjct: 8 LVAGMVTAAMALTACDSASNSANHIKVGVINGAEQDV-ADVAKKVAKEKYGLDVELVGFS 66
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+ +KG + F+ E KLVA G++
Sbjct: 67 GSLLPNEATDKGD---LDANVFQHRPFLEQQNREHGYKLVAV-----GNTFVFPMAGYSK 118
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK--------FSLKGFRLIEAS 175
IK+ D+ +I +
Sbjct: 119 KIKNINDLKAGDTIAIPFDPTNLGRALLLLEKTGLITLKPDTGLLPTVLDITTNTHNLRI 178
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYL 235
+Q+ R + V + + + G I V +V +
Sbjct: 179 MEVEGAQLPRLLDDPQVTVAIISTTY--IQQTGLTPTKDGIFIEDKESPYVNIIVTRENN 236
Query: 236 DKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
+ N+ + ++ + + I N +
Sbjct: 237 KEAENVKKFIQAYQ--SDEVEQAANRIFNGG-----AVKGW 270
>gi|145221318|ref|YP_001131996.1| substrate-binding region of ABC-type glycine betaine transport
system [Mycobacterium gilvum PYR-GCK]
gi|145213804|gb|ABP43208.1| Substrate-binding region of ABC-type glycine betaine transport
system [Mycobacterium gilvum PYR-GCK]
Length = 345
Score = 45.6 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 26/256 (10%), Positives = 64/256 (25%), Gaps = 25/256 (9%)
Query: 2 YKILAVCLFLTTFSISYAR--------DADSCTPVRFADTGWTDIAATTAMTSVILEEIL 53
+K L V L +++ + +R + + E +
Sbjct: 3 FKALLVALVAGMLALAGCSVGSGGQSGNDPEKPTIRIGYQTFPSGDLIVKNNKWLEEALP 62
Query: 54 GYKTN-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKY 112
+ +K + + +D P P + + +
Sbjct: 63 DHNIKWVKFDSGADVNTAFVADELDFGALGSSPVARGLSEPLNIPYQVAFILDVAGDN-- 120
Query: 113 MLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ +L K + + +L ++ N S +LI
Sbjct: 121 ---------EALVARNAAGITTIADLRDKRVATPFASTAHYSLLAALDQNGLSPNDVQLI 171
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY-TVVR 231
+ A + +W P L +++ G+ ++ VV
Sbjct: 172 DLQPQAILA----AWERGDIDAAYTWLPTLNELRKTGKDLITSRQLAAEGKPTLDLAVVS 227
Query: 232 SDYLDKCPNISRLLKN 247
S++ P + +
Sbjct: 228 SEFAKSHPEVVDTWRK 243
>gi|307244622|ref|ZP_07526726.1| conserved hypothetical protein [Peptostreptococcus stomatis DSM
17678]
gi|306492003|gb|EFM64052.1| conserved hypothetical protein [Peptostreptococcus stomatis DSM
17678]
Length = 330
Score = 45.6 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 43/327 (13%), Positives = 90/327 (27%), Gaps = 43/327 (13%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K LAV L ++ A T + + L T++
Sbjct: 1 MKKKLAVFLAALLVITGLTACGQKEKT-------TSEPAVTAKVAA------LKGPTSMG 47
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSI------KLVAENLQGAKYML 114
++ + + K K D + + + ++ QG +L
Sbjct: 48 MVKMMADQKDAKEKDYDFTIASSPDEIAPKFLKGEFDIVALPSNLASILYNKSQGKLQVL 107
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
A+N +G +++ I G +Y G ++ N + L
Sbjct: 108 AINTLGVLYLMENGDTIKSIADLKGKTVYSSGKGAVPEYAFNYILKANGLN-PDTDLRVE 166
Query: 175 SELASFSQIRRDQRNNIPAVFLS--WEPHPINSDLNIHYLPGGEEISGFGEASV------ 226
+ + + L + + + + +
Sbjct: 167 YKSEHTEALAALLNDKSGLAVLPQPFATVASLKNKGLRPALDLTKEWDKASKNAKSTMIT 226
Query: 227 -YTVVRSDYLDKCPN-ISRLLKNIK----FSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
VV D+ K P I + + + K ++ ++ KLI N V + +
Sbjct: 227 GVVVVNKDFAAKYPEKIKKFMADYKASIDYTNDNIDDAAKLIEENDIVPAAVAKKAIPQ- 285
Query: 281 PDLLKNWLIGVTTFDGQDPSRQLERFM 307
+T DG D +L ++
Sbjct: 286 --------CNITYVDGSDMKDKLSGYL 304
>gi|167566229|ref|ZP_02359145.1| taurine ABC transporter, periplasmic binding protein [Burkholderia
oklahomensis EO147]
Length = 336
Score = 45.6 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 36/281 (12%), Positives = 74/281 (26%), Gaps = 32/281 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-I 59
+ +ILAV F + + V A D A E+ G+K N
Sbjct: 3 LKRILAVTTFAVAACSAVHAQSAHAGTVNVAYQYGADPAKLAQ-AGAAYEKATGWKINWR 61
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ + +L + + I P + + + G L V
Sbjct: 62 RFDSGADVVAALASGDVQIGDVGQSPFTAAVSRGVPIQAVVLNA---ITGVSEALVVRG- 117
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+L K + + +L + + + +++
Sbjct: 118 ---------GARIDKPGDLVGKTIATPYASNCHYALLAALKHWGIDPQRVKIVNLGP--- 165
Query: 180 FSQIRRDQRNNIPAVFLSWEPH-PINSDLNIHYLPGGEEISGFGEASVY-TVVRSDYLDK 237
++I + +W+P L E+ +G + VRSD+
Sbjct: 166 -TEIVAAWERGVIDAAYTWDPALGRAKASGGKVLVDSAEVGKWGAPTFDLWAVRSDFALA 224
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQ-----DRQFVG 273
P+ N+ + + N + Q
Sbjct: 225 HPDFVSKFVNVT------TQAIADYRANGKTWTSASPQVAA 259
>gi|157147370|ref|YP_001454689.1| DL-methionine transporter substrate-binding subunit [Citrobacter
koseri ATCC BAA-895]
gi|157084575|gb|ABV14253.1| hypothetical protein CKO_03168 [Citrobacter koseri ATCC BAA-895]
Length = 271
Score = 45.6 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 30/286 (10%), Positives = 68/286 (23%), Gaps = 30/286 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K A L D P ++ + + + +E G +
Sbjct: 5 FKTFAAVGALIGSLALVGCGQDEKDPNHIKVGVIVGAEQQV-AEVAQKVAKEKYGLDVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V +L ID F + IK L
Sbjct: 64 VTFNDYVLPNEALSKGDIDA---------NAFQHKPYLDQQIKDRGYKLVAVGNTFVYPI 114
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK--------FSLKGFR 170
G++ IKS ++ + + + + +I +
Sbjct: 115 AGYSKKIKSLDELQDGSQVAVPNDPTNLGRSLLLLQKVGLIKLKDGVGLLPTVLDVTENP 174
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
Q+ R + A+ + + S +++ G + V +V
Sbjct: 175 KNLKIVELEAPQLPRSLDDAQIALAVINTTYA--SQIDLTPAKDGIFVEDKDSPYVNLIV 232
Query: 231 RSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
+ N+ + ++ + E + N +
Sbjct: 233 TREDNKDAENVKKFVQAYQ--SDEVYEAANKVFNGG-----AVKGW 271
>gi|77456484|ref|YP_345989.1| taurine ABC transporter, periplasmic binding protein [Pseudomonas
fluorescens Pf0-1]
gi|77380487|gb|ABA72000.1| taurine ABC transport system, substrate-binding periplasmic protein
precursor [Pseudomonas fluorescens Pf0-1]
Length = 325
Score = 45.6 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 19/117 (16%), Positives = 35/117 (29%), Gaps = 17/117 (14%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I + W+P + N L E++ FG + +VR D+ +K P
Sbjct: 164 AIIAAWKRGDIDATYVWDPALGVAKENGKVLITSGELAKFGAPTFDAWIVRKDFAEKHPE 223
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW--LIGVTTFD 295
I + + ++D + L + + L G D
Sbjct: 224 IVTAFAKVTLD---------AYADYRKDP----KAWL-ANQSNVDKLVKLSGAKASD 266
>gi|30262880|ref|NP_845257.1| sulfonate ABC transporter, sulfonate-binding protein, putative
[Bacillus anthracis str. Ames]
gi|47528214|ref|YP_019563.1| sulfonate ABC transporter sulfonate-binding protein [Bacillus
anthracis str. 'Ames Ancestor']
gi|49185719|ref|YP_028971.1| sulfonate ABC transporter sulfonate-binding protein [Bacillus
anthracis str. Sterne]
gi|165869200|ref|ZP_02213860.1| putative sulfonate ABC transporter, sulfonate-binding protein
[Bacillus anthracis str. A0488]
gi|167632042|ref|ZP_02390369.1| putative sulfonate ABC transporter, sulfonate-binding protein
[Bacillus anthracis str. A0442]
gi|167637876|ref|ZP_02396155.1| putative sulfonate ABC transporter, sulfonate-binding protein
[Bacillus anthracis str. A0193]
gi|170704542|ref|ZP_02895008.1| putative sulfonate ABC transporter, sulfonate-binding protein
[Bacillus anthracis str. A0389]
gi|177649746|ref|ZP_02932748.1| putative sulfonate ABC transporter, sulfonate-binding protein
[Bacillus anthracis str. A0174]
gi|190565441|ref|ZP_03018361.1| putative sulfonate ABC transporter, sulfonate-binding protein
[Bacillus anthracis Tsiankovskii-I]
gi|196032399|ref|ZP_03099813.1| putative sulfonate ABC transporter, sulfonate-binding protein
[Bacillus cereus W]
gi|227814275|ref|YP_002814284.1| putative sulfonate ABC transporter, sulfonate-binding protein
[Bacillus anthracis str. CDC 684]
gi|228927964|ref|ZP_04091009.1| aliphatic sulfonates-binding protein [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228946523|ref|ZP_04108838.1| aliphatic sulfonates-binding protein [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|229122459|ref|ZP_04251672.1| aliphatic sulfonates-binding protein [Bacillus cereus 95/8201]
gi|229599956|ref|YP_002867171.1| putative sulfonate ABC transporter, sulfonate-binding protein
[Bacillus anthracis str. A0248]
gi|254685478|ref|ZP_05149338.1| putative sulfonate ABC transporter, sulfonate-binding protein
[Bacillus anthracis str. CNEVA-9066]
gi|254722885|ref|ZP_05184673.1| putative sulfonate ABC transporter, sulfonate-binding protein
[Bacillus anthracis str. A1055]
gi|254737935|ref|ZP_05195638.1| putative sulfonate ABC transporter, sulfonate-binding protein
[Bacillus anthracis str. Western North America USA6153]
gi|254742892|ref|ZP_05200577.1| putative sulfonate ABC transporter, sulfonate-binding protein
[Bacillus anthracis str. Kruger B]
gi|254752249|ref|ZP_05204286.1| putative sulfonate ABC transporter, sulfonate-binding protein
[Bacillus anthracis str. Vollum]
gi|254760766|ref|ZP_05212790.1| putative sulfonate ABC transporter, sulfonate-binding protein
[Bacillus anthracis str. Australia 94]
gi|30257513|gb|AAP26743.1| putative sulfonate ABC transporter, sulfonate-binding protein
[Bacillus anthracis str. Ames]
gi|47503362|gb|AAT32038.1| putative sulfonate ABC transporter, sulfonate-binding protein
[Bacillus anthracis str. 'Ames Ancestor']
gi|49179646|gb|AAT55022.1| sulfonate ABC transporter, sulfonate-binding protein, putative
[Bacillus anthracis str. Sterne]
gi|164715926|gb|EDR21443.1| putative sulfonate ABC transporter, sulfonate-binding protein
[Bacillus anthracis str. A0488]
gi|167514425|gb|EDR89792.1| putative sulfonate ABC transporter, sulfonate-binding protein
[Bacillus anthracis str. A0193]
gi|167532340|gb|EDR94976.1| putative sulfonate ABC transporter, sulfonate-binding protein
[Bacillus anthracis str. A0442]
gi|170130343|gb|EDS99204.1| putative sulfonate ABC transporter, sulfonate-binding protein
[Bacillus anthracis str. A0389]
gi|172084820|gb|EDT69878.1| putative sulfonate ABC transporter, sulfonate-binding protein
[Bacillus anthracis str. A0174]
gi|190563468|gb|EDV17433.1| putative sulfonate ABC transporter, sulfonate-binding protein
[Bacillus anthracis Tsiankovskii-I]
gi|195995150|gb|EDX59104.1| putative sulfonate ABC transporter, sulfonate-binding protein
[Bacillus cereus W]
gi|227004150|gb|ACP13893.1| putative sulfonate ABC transporter, sulfonate-binding protein
[Bacillus anthracis str. CDC 684]
gi|228661020|gb|EEL16647.1| aliphatic sulfonates-binding protein [Bacillus cereus 95/8201]
gi|228813136|gb|EEM59442.1| aliphatic sulfonates-binding protein [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228831654|gb|EEM77246.1| aliphatic sulfonates-binding protein [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|229264364|gb|ACQ46001.1| putative sulfonate ABC transporter, sulfonate-binding protein
[Bacillus anthracis str. A0248]
Length = 328
Score = 45.6 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 34/287 (11%), Positives = 80/287 (27%), Gaps = 31/287 (10%)
Query: 2 YKILAVCLFLTTFSISY----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL---G 54
+K+L+ L ++ F A V+ EE G
Sbjct: 5 FKVLSFTLAISLFLFGCEKSTASSKKEDVTVQIGIQQGLSPLLLAQ-KKGWFEEEFKKEG 63
Query: 55 YKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
K P F ++ + +D P + A ++ +
Sbjct: 64 VKVKWTEFQSGPPYFEAIASNRLDFGEVGNSPVISAQAAGIGF---TEIANTSYARKGTG 120
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+ V IK EL K + G+ + ++ + K +I+
Sbjct: 121 ILVQKDSKITSIK----------ELKGKKIAVAKGSSAFNLLYRALDKEGINAKDVNVIQ 170
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+ + + + W+P +N + + + + R+
Sbjct: 171 LQPD----EAQPAFESGSVDAWAIWDPFISLHTVNKGAKVITDGERLNVSSPEFLIARTK 226
Query: 234 YLDKCPN-ISRLL----KNIKFSVALENEMMKLILNNKQDRQFVGRT 275
+ + P + + L K + +E +K+ + K+ + +
Sbjct: 227 FAKEHPELVEKFLKVYEKARVWQDENLDEAIKIYTSAKKIDAEIVKE 273
>gi|206578385|ref|YP_002240315.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Klebsiella pneumoniae 342]
gi|288937020|ref|YP_003441079.1| lipoprotein, YaeC family [Klebsiella variicola At-22]
gi|290512441|ref|ZP_06551807.1| D-methionine transport system substrate-binding protein [Klebsiella
sp. 1_1_55]
gi|206567443|gb|ACI09219.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Klebsiella pneumoniae 342]
gi|288891729|gb|ADC60047.1| lipoprotein, YaeC family [Klebsiella variicola At-22]
gi|289774782|gb|EFD82784.1| D-methionine transport system substrate-binding protein [Klebsiella
sp. 1_1_55]
Length = 271
Score = 45.2 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 32/286 (11%), Positives = 72/286 (25%), Gaps = 30/286 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K A L D P ++ + + + +E G +
Sbjct: 5 FKTFAAVGALIGSLALVGCGQDEKDPNHIKVGVIVGAEQQV-AEVAQKVAKEKYGLDVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V +L ID+ F + IK L
Sbjct: 64 VTFNDYVLPNEALSKGDIDV---------NAFQHKPYLDQQIKDRGYKLVSVGNTFVYPI 114
Query: 119 VGFALGIKSYQDIAKYKKEL---GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
G++ IKS ++ + G ++ + + ++E
Sbjct: 115 AGYSKKIKSLDELQPGSQIAVPNDPTNLGRSLLLLQQVGLIKLKDGVGLLPTSLDIVENP 174
Query: 176 ELASFSQIR-----RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
+ ++ R + A+ + + S + + G + G V +V
Sbjct: 175 KNLKIVELEAPQLPRSLDDAQIALAVINTTYA--SQIGLTPAKDGIFVEGKESPYVNLIV 232
Query: 231 RSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
+ N+ + ++ + E I N +
Sbjct: 233 AREDNKDAENVKKFVQAYQ--SDEVYEAANKIFNGG-----AVKGW 271
>gi|228934177|ref|ZP_04097016.1| aliphatic sulfonates-binding protein [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228825345|gb|EEM71139.1| aliphatic sulfonates-binding protein [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
Length = 328
Score = 45.2 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 34/287 (11%), Positives = 80/287 (27%), Gaps = 31/287 (10%)
Query: 2 YKILAVCLFLTTFSISY----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL---G 54
+K+L+ L ++ F A V+ EE G
Sbjct: 5 FKVLSFTLAISLFLFGCEKSTASSKKEDVTVQIGIQQGLSPLLLAQ-KKGWFEEEFKKEG 63
Query: 55 YKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
K P F ++ + +D P + A ++ +
Sbjct: 64 VKVKWTEFQSGPPYFEAIASNRLDFGEVGNSPVISAQAAGIGF---TEIANTSYARKGTG 120
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+ V IK EL K + G+ + ++ + K +I+
Sbjct: 121 ILVQKDSKITSIK----------ELKGKKIAVAKGSSAFNLLYRALDKEGINAKDVNVIQ 170
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+ + + + W+P +N + + + + R+
Sbjct: 171 LQPD----EAQPAFESGSVDAWAIWDPFISLHTVNKGAKVITDGERLNVSSPEFLIARTK 226
Query: 234 YLDKCPN-ISRLL----KNIKFSVALENEMMKLILNNKQDRQFVGRT 275
+ + P + + L K + +E +K+ + K+ + +
Sbjct: 227 FAKEHPELVEKFLKVYEKARVWQDENLDEAIKIYTSAKKIDAEIVKE 273
>gi|307704099|ref|ZP_07641027.1| bacterial extracellular solute-binding family protein
[Streptococcus mitis SK597]
gi|307622321|gb|EFO01330.1| bacterial extracellular solute-binding family protein
[Streptococcus mitis SK597]
Length = 346
Score = 45.2 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 39/283 (13%), Positives = 85/283 (30%), Gaps = 41/283 (14%)
Query: 1 MYKILAVC----LFLTTFSISY------ARDADSCTPVRFADTGWTDIAATTAMTSVILE 50
M KIL +FL+ S + + DS + + + + E
Sbjct: 1 MKKILFFLSCGWIFLSLSGCSSPIEAETSTEKDSDNTLVVYSPN-PEDLIEETIPAF--E 57
Query: 51 EILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWY-----------PSLEKFIAPYLEEGS 99
E G K ++ + F+ + + + E +I+ ++
Sbjct: 58 EKYGIKVDLVQASTGELFKKAEAEKESPVADVIFGGSYALFSSNENLFEPYISQENDQII 117
Query: 100 IKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNE--------- 150
+ + Y L V+ + + I Y L K+ G +
Sbjct: 118 PEYQNKTGFYTPYTLDVSVIIANSSLTKDIKIEGYNDLLNPKLKGKIATADPSNASSAFA 177
Query: 151 ------GNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWE--PHP 202
+Q + + F L++ +S S + + + AV L++E
Sbjct: 178 QLTNMLVDQGGYENEQAWTYVKNLFTLVDGKIASSSSNVYKAVADGEMAVGLTYEDPALK 237
Query: 203 INSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
+ +D + +E + F + V + ++D L
Sbjct: 238 LLNDGVDVKVIYPKEGTVFLPGNAAIVKNAKHMDNAKKFIDFL 280
>gi|238751422|ref|ZP_04612914.1| D-methionine-binding lipoprotein [Yersinia rohdei ATCC 43380]
gi|238710289|gb|EEQ02515.1| D-methionine-binding lipoprotein [Yersinia rohdei ATCC 43380]
Length = 271
Score = 45.2 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 23/268 (8%), Positives = 69/268 (25%), Gaps = 18/268 (6%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K +A L P ++ + + + ++ G +
Sbjct: 5 FKSIAAVSALIGTLALVGCGPAEKDPNHIKVGVIVGAEQQV-AEVAQKVAKDKYGLDVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V +L ID+ P L++ I + + A Y +
Sbjct: 64 VTFNDYVLPNEALSKGDIDLNAFQHKPYLDQQIKDRGYKLVSVGNSFVYPIAGYSKKIKS 123
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ + + + ++ + + ++E +
Sbjct: 124 LDELQPGAQVALPNDPTNLGRSLLLL------QSVGLIKLKDGVGLLPTVLDVVENPKNL 177
Query: 179 SFSQIR-----RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
++ R + + + + S + + G + V +V +
Sbjct: 178 KLVELEAPQLPRSLDDQKIDLAIINTTYA--SQIGLTPAKDGLFVEDKDSPYVNLIVARE 235
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKL 261
N+ + ++ + S + + K
Sbjct: 236 DNKDAENVKKFVQAYQ-SDEVYDAANKA 262
>gi|237802275|ref|ZP_04590736.1| alkanesulfonate transporter substrate-binding subunit [Pseudomonas
syringae pv. oryzae str. 1_6]
gi|331025132|gb|EGI05188.1| alkanesulfonate transporter substrate-binding subunit [Pseudomonas
syringae pv. oryzae str. 1_6]
Length = 311
Score = 45.2 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 33/254 (12%), Positives = 72/254 (28%), Gaps = 26/254 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSV--ILEEILGYKTN 58
M + + L + AD +R + T + +LE+
Sbjct: 1 MKRFTFIATILAFSGLLNTASADEPDTLRMGYQK---GSITLVLAKEHGLLEKRFPQTQI 57
Query: 59 --IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
I+ A P +L +DI P + +A
Sbjct: 58 KWIEFPAGPQMLEALNIGSLDIASTGDIPPIFAQVAGADL-------------VYIAAEP 104
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ + EL + ++ G+ + +L ++N + K + + +
Sbjct: 105 AKPQAETILVRNESPLHSVAELKGRKVALQKGSSSHNLVLRLLNKAGLTFKDIQPVYLTP 164
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
+ R N + +W+P+ + H S YT R + +
Sbjct: 165 ----ADARAAFENGSVDAWATWDPYSSIAINEGHSRLLANGEGLGLAGSFYT-ARRAFAE 219
Query: 237 KCPN-ISRLLKNIK 249
K + ++L +
Sbjct: 220 KNGAFVQQVLDQLT 233
>gi|330961935|gb|EGH62195.1| alkanesulfonate transporter substrate-binding subunit [Pseudomonas
syringae pv. maculicola str. ES4326]
Length = 311
Score = 45.2 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 32/254 (12%), Positives = 69/254 (27%), Gaps = 26/254 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSV--ILEEIL-GYKT 57
M + L + A+ +R + T + +LE+ K
Sbjct: 1 MKPFTFIAAILAFSGLLNTASANDPDTLRIGYQK---GSITLVLAKEHALLEKRFPDTKI 57
Query: 58 N-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
I+ A P +L +DI P + +A
Sbjct: 58 KWIEFPAGPQMLEALNIGSLDIASTGDIPPIFAQVAGADL-------------VYIGAEP 104
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ + +L + ++ G+ + +L +N + K + I +
Sbjct: 105 AKPQAETLLVRNESPLHSVADLKGRKVALQKGSSSHNVVLRALNKAGLTFKDIQPIYLTP 164
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
+ R N + W+P+ + H YT R + +
Sbjct: 165 ----ADARAAFENGSVDAWAIWDPYYSIAMTEGHSRLLANGEGLGLSGPFYT-ARRAFAE 219
Query: 237 KCPN-ISRLLKNIK 249
K + ++L +
Sbjct: 220 KNGQFVQQILDELT 233
>gi|262191157|ref|ZP_06049359.1| ABC-type tungstate transport system binding protein [Vibrio
cholerae CT 5369-93]
gi|262032966|gb|EEY51502.1| ABC-type tungstate transport system binding protein [Vibrio
cholerae CT 5369-93]
Length = 271
Score = 45.2 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 6/95 (6%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYKT 57
M K + +SY+ + T +R A T + + +L E+ GYK
Sbjct: 1 MKKTTFTLAAASLILVSYSASSADDTRIRLAT---TTSTYDSGLLDYLLPKFEQDTGYKV 57
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIA 92
++ + +N +D+ M + + F+
Sbjct: 58 DVIATGTGKALKMGENGDVDLVMTHAPKAEASFVE 92
>gi|167573340|ref|ZP_02366214.1| taurine ABC transporter, periplasmic binding protein [Burkholderia
oklahomensis C6786]
Length = 336
Score = 45.2 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 36/281 (12%), Positives = 74/281 (26%), Gaps = 32/281 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-I 59
+ +ILAV F + + V A D A E+ G+K N
Sbjct: 3 LKRILAVTTFAVAACSAVHAQSAHAGTVNVAYQYGADPAKLAQ-AGAAYEKATGWKINWR 61
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ + +L + + I P + + + G L V
Sbjct: 62 RFDSGADVVAALASGDVQIGDVGQSPFTAAVSRGVPIQAVVLNA---ITGVSEALVVRG- 117
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+L K + + +L + + + +++
Sbjct: 118 ---------GARIDKPGDLVGKTIATPYASNCHYALLAALKHWGIDPQRVKIVNLGP--- 165
Query: 180 FSQIRRDQRNNIPAVFLSWEPH-PINSDLNIHYLPGGEEISGFGEASVY-TVVRSDYLDK 237
++I + +W+P L E+ +G + VRSD+
Sbjct: 166 -TEIVAAWERGVIDAAYTWDPALGRAKASGGKVLVDSAEVGKWGAPTFDLWAVRSDFALA 224
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQ-----DRQFVG 273
P+ N+ + + N + Q
Sbjct: 225 HPDFVSKFVNVT------TQAIADYRANGKTWTSASPQVAA 259
>gi|156974546|ref|YP_001445453.1| hypothetical protein VIBHAR_02264 [Vibrio harveyi ATCC BAA-1116]
gi|156526140|gb|ABU71226.1| hypothetical protein VIBHAR_02264 [Vibrio harveyi ATCC BAA-1116]
Length = 272
Score = 45.2 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 34/283 (12%), Positives = 64/283 (22%), Gaps = 35/283 (12%)
Query: 1 MYKI-LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYK 56
M KI L + T A A +R A T + + +L E+ GYK
Sbjct: 1 MKKIALTLAATSITLVSYSAFSAQEGEHIRLAT---TTSTYHSGLLDYLLPQFEKDTGYK 57
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGY-------WYPSLEKFIAPYLEEGSIKLVAENLQG 109
+I + +N +D+ M + + + + L +V
Sbjct: 58 VDIIAAGTGKALKMGENGDVDLVMTHAPKAEGVFVENGYGVLPRKLMYNEFVIVGPKADP 117
Query: 110 AKYM-----LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKF 164
A+ L V + E N +
Sbjct: 118 AQVKDDASVLDVFKEIADKDATFISRGDDSGTHKKELGIWAQTKMEPNFGGYRSVGQGMG 177
Query: 165 SLKGFRLIEASELASFSQIRRDQRNNIPAVFLS------WEPHPINSDLNIHYLPGGEEI 218
+ +N + L + P+ + Y
Sbjct: 178 PTLNMASEMQGYTMTDRGTWLAYQNKLDLAILFQGDEKLFNPYQVILVNPERY---PTIN 234
Query: 219 SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKL 261
+A +V P L+ + +
Sbjct: 235 YQGAKAFSDWLVN-------PRGQELINGFRLNGKQLFVANAE 270
>gi|153801178|ref|ZP_01955764.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
gi|124123298|gb|EAY42041.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
Length = 275
Score = 45.2 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 6/95 (6%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYKT 57
M K + +SY+ + T +R A T + + +L E+ GYK
Sbjct: 5 MKKTTFTLAAASLILVSYSASSADDTRIRLAT---TTSTYDSGLLDYLLPKFEQDTGYKV 61
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIA 92
++ + +N +D+ M + + F+
Sbjct: 62 DVIATGTGKALKMGENGDVDLVMTHAPKAEASFVE 96
>gi|152986700|ref|YP_001346554.1| taurine ABC transporter periplasmic binding protein [Pseudomonas
aeruginosa PA7]
gi|150961858|gb|ABR83883.1| taurine ABC transporter, periplasmic binding protein [Pseudomonas
aeruginosa PA7]
Length = 337
Score = 45.2 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 20/157 (12%), Positives = 47/157 (29%), Gaps = 6/157 (3%)
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+ + ++L KI + + +L + + + +++ +
Sbjct: 107 AAEALVVRNGSGIEKPEDLAGKIIATPFVSTSHYSLLGALKHWRIDPSKVKIVNLNP--- 163
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEAS-VYTVVRSDYLDKC 238
++I R W P + L E+ +G + V R D+ +K
Sbjct: 164 -AEIAAAWRRGDIDGAFVWSPALGEIKKSGKVLTDAAEVGRWGAPTFEVWVARKDFAEKH 222
Query: 239 PNISRLLKNIKFSV-ALENEMMKLILNNKQDRQFVGR 274
P I + A N + + + + R
Sbjct: 223 PEIVARFARVSLDSFADYNAHKAEWTADSEPVKKIAR 259
>gi|294070|gb|AAA25547.1| lipoprotein 2 [Mannheimia haemolytica]
Length = 277
Score = 45.2 bits (105), Expect = 0.012, Method: Composition-based stats.
Identities = 30/289 (10%), Positives = 70/289 (24%), Gaps = 29/289 (10%)
Query: 2 YKILAVCLFLTTFSISY----------ARDADSCTPVRFADTGWTDIAATTAMTSVILEE 51
K+L V L + ++ P++ + T + I +E
Sbjct: 4 KKLLGVALVSALALTACKDEKAQAPATTAKTENKAPLKVGVMTGPEAQ-MTEVAVKIAKE 62
Query: 52 ILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAK 111
G + + + F E +K L
Sbjct: 63 KYGLDVELVQFTEYT--------QPNAALHSKDLDANAFQTVPYLEQEVKDRGYKLAIIG 114
Query: 112 YMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
L ++ IK+ ++ + ++
Sbjct: 115 NTLVWPIAAYSKKIKNISELKDGATVAIPNNASNTARALLLLQAHGLLKLKDPKNVFATE 174
Query: 172 IEASELASFSQIRRD----QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
+ E +I + + V L+ + + G + V
Sbjct: 175 NDIIENPKNIKIVQADTSLLTRMLDDVELAVINNTYAGQAGLSPDKDGIIVESKDSPYVN 234
Query: 228 TVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
VV + P + +K+ + + + E +KL+ + V +
Sbjct: 235 LVVSREDNKDDPRLQTFVKSFQ-TEEVFQEALKLLTVHG-----VVKGW 277
>gi|153214783|ref|ZP_01949612.1| conserved hypothetical protein [Vibrio cholerae 1587]
gi|153824795|ref|ZP_01977462.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
gi|124115125|gb|EAY33945.1| conserved hypothetical protein [Vibrio cholerae 1587]
gi|149741513|gb|EDM55543.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
Length = 275
Score = 45.2 bits (105), Expect = 0.012, Method: Composition-based stats.
Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 6/95 (6%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYKT 57
M K + +SY+ + T +R A T + + +L E+ GYK
Sbjct: 5 MKKTTFTLAAASLILVSYSASSADDTRIRLAT---TTSTYDSGLLDYLLPKFEQDTGYKV 61
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIA 92
++ + +N +D+ M + + F+
Sbjct: 62 DVIATGTGKALKMGENGDVDLVMTHAPKAEASFVE 96
>gi|188535299|ref|YP_001909096.1| Taurine transport system periplasmic protein [Erwinia tasmaniensis
Et1/99]
gi|188030341|emb|CAO98230.1| Taurine transport system periplasmic protein [Erwinia tasmaniensis
Et1/99]
Length = 325
Score = 45.2 bits (105), Expect = 0.012, Method: Composition-based stats.
Identities = 32/242 (13%), Positives = 70/242 (28%), Gaps = 22/242 (9%)
Query: 8 CLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPV 66
+ + T ++S + V A + A +E G K + K +
Sbjct: 6 AVSILTAALSLTALSVQAVDVTVAYQTSAEPAKVAQADGTFAKES-GAKVDWRKFDSGSG 64
Query: 67 TFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIK 126
R+L + + I P E + + G+ L V
Sbjct: 65 VVRALASGDVQIGNIGSSPLAVAASQQVPIE---VFLLASQLGSSEALVVKKEI------ 115
Query: 127 SYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRD 186
+ ++L K + + + +L + + + ++I I
Sbjct: 116 ------NHPQDLIGKRIAVPFMSTTHYSLLAALKHWGIKPEQVQIINLQPP----AIAAA 165
Query: 187 QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLL 245
+ W P + L +++ +G ++ VVR D+ K P++
Sbjct: 166 WQRGDIDGAYVWAPAVNQLEKEGRVLTDSSQVAEWGAPTLDVWVVRKDFAAKHPDVVSAF 225
Query: 246 KN 247
Sbjct: 226 AR 227
>gi|289178788|gb|ADC86034.1| Alkanesulfonates-binding protein [Bifidobacterium animalis subsp.
lactis BB-12]
Length = 381
Score = 45.2 bits (105), Expect = 0.012, Method: Composition-based stats.
Identities = 32/286 (11%), Positives = 76/286 (26%), Gaps = 37/286 (12%)
Query: 1 MYKIL-AVCLFLTTFSISYARDADSCT---PVRFADTGWTDIAATTAMTSVIL-EEILGY 55
M + A C L + S S + ++ +R A T TT L E +
Sbjct: 66 MLRFTSAACAALLSLSCSACGEPNAADSSTTMRVAYLS-TANYLTTVRGEDFLDETMQHT 124
Query: 56 KTNIK-LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
+ ++ + D + + + E G +
Sbjct: 125 NVKFTGPYNPTDAYSAVLSGNADATSTGTGSYINFV---AQGQPWVAFAIEYYTGDSQGI 181
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
G+ S +D+ + + G G+ + ++ + ++E
Sbjct: 182 V---ASPKSGVNSLEDLYGRNVAIIKR------GGTGDYVLHKAFEHDGLDVGRVNIVEM 232
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYT-VVRSD 233
S + + S++ + + + +G +V +V D
Sbjct: 233 SPSNFQA----AFTSGQIDALSSFDQNLAAAMATPGAKLL-VNATEYGNKNVSIHMVSKD 287
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQ---FVGRTM 276
+ K P + A+ +++ + R
Sbjct: 288 FATKHPEAVK---------AMYRALVRESDVAQATPSIITDAYREF 324
>gi|152968792|ref|YP_001333901.1| DL-methionine transporter substrate-binding subunit [Klebsiella
pneumoniae subsp. pneumoniae MGH 78578]
gi|238893194|ref|YP_002917928.1| DL-methionine transporter substrate-binding subunit [Klebsiella
pneumoniae NTUH-K2044]
gi|329996735|ref|ZP_08302533.1| D-methionine-binding lipoprotein MetQ [Klebsiella sp. MS 92-3]
gi|150953641|gb|ABR75671.1| D-methionine transport protein (ABC superfamily, peri_bind)
[Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
gi|238545510|dbj|BAH61861.1| D- and L-methionine transport system periplasmic binding component
[Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
gi|328539334|gb|EGF65358.1| D-methionine-binding lipoprotein MetQ [Klebsiella sp. MS 92-3]
Length = 271
Score = 45.2 bits (105), Expect = 0.012, Method: Composition-based stats.
Identities = 32/286 (11%), Positives = 72/286 (25%), Gaps = 30/286 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K A L D P ++ + + + +E G +
Sbjct: 5 FKTFAAVGALIGSLALVGCGQDEKDPNHIKVGVIVGAEQQV-AEVAQKVAKEKYGLDVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V +L ID+ F + IK L
Sbjct: 64 VTFNDYVLPNEALSKGDIDV---------NAFQHKPYLDQQIKDRGYKLVAVGNTFVYPI 114
Query: 119 VGFALGIKSYQDIAKYKKEL---GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
G++ IKS ++ + G ++ + + ++E
Sbjct: 115 AGYSKKIKSLDELQPGSQIAVPNDPTNLGRSLLLLQQVGLIKLKDGVGLLPTSLDIVENP 174
Query: 176 ELASFSQIR-----RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
+ ++ R + A+ + + S + + G + G V +V
Sbjct: 175 KNLKIVELEAPQLPRSLDDAQIALAVINTTYA--SQIGLTPAKDGIFVEGKESPYVNLIV 232
Query: 231 RSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
+ N+ + ++ + E I N +
Sbjct: 233 AREDNKDAENVKKFVQAYQ--SDEVYEAANKIFNGG-----AVKGW 271
>gi|229145493|ref|ZP_04273877.1| aliphatic sulfonates-binding protein [Bacillus cereus BDRD-ST24]
gi|228637946|gb|EEK94392.1| aliphatic sulfonates-binding protein [Bacillus cereus BDRD-ST24]
Length = 328
Score = 45.2 bits (105), Expect = 0.012, Method: Composition-based stats.
Identities = 34/285 (11%), Positives = 76/285 (26%), Gaps = 32/285 (11%)
Query: 2 YKILAVCLFLTTFSISY----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL---G 54
+KIL+ L ++ + A ++ EE G
Sbjct: 5 FKILSFALAISVCLLGCEKSTASSKKEDVTIQIGIQQGLSPLLLAK-KKGWFEEEFKKEG 63
Query: 55 YKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
K P F ++ + +D P + A ++ +
Sbjct: 64 VKVKWTEFQSGPPYFEAIASNRLDFGEVGNSPVISAQAAGIGF---TEIANTSYARKGTG 120
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+ V +K EL K + G+ + ++ K +I+
Sbjct: 121 ILVQKDSKIASVK----------ELKGKKIAVAKGSSAFNLLYRALDKEGIDAKEVNVIQ 170
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+ + + + W+P LN + + + + + R+
Sbjct: 171 LQPD----EAQPAFESGSVDAWAIWDPFISLHTLNKGAKVIADGETLNVSSPEFLITRTK 226
Query: 234 YLDKCPNISRLL-----KNIKFSVALENEMM-KLILNNKQDRQFV 272
+ + P + K + A +E + K D + V
Sbjct: 227 FAKEHPELVEKFLKVYEKARVWQDANLDEAIKVYTSVKKIDAEIV 271
>gi|218234144|ref|YP_002367639.1| putative sulfonate ABC transporter, sulfonate-binding protein
[Bacillus cereus B4264]
gi|218162101|gb|ACK62093.1| putative sulfonate ABC transporter, sulfonate-binding protein
[Bacillus cereus B4264]
Length = 328
Score = 45.2 bits (105), Expect = 0.012, Method: Composition-based stats.
Identities = 34/285 (11%), Positives = 76/285 (26%), Gaps = 32/285 (11%)
Query: 2 YKILAVCLFLTTFSISY----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL---G 54
+KIL+ L ++ + A ++ EE G
Sbjct: 5 FKILSFALAISVCLLGCEKSTASSKKEDVTIQIGIQQGLSPLLLAK-KKGWFEEEFKKEG 63
Query: 55 YKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
K P F ++ + +D P + A ++ +
Sbjct: 64 VKVKWTEFQSGPPYFEAIASNRLDFGEVGNSPVISAQAAGIGF---TEIANTSYARKGTG 120
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+ V +K EL K + G+ + ++ K +I+
Sbjct: 121 ILVQKDSKIASVK----------ELKGKKIAVAKGSSAFNLLYRALDKEGIDAKEVNVIQ 170
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+ + + + W+P LN + + + + + R+
Sbjct: 171 LQPD----EAQPAFESGSVDAWAIWDPFISLHTLNKGAKVIADGETLNVSSPEFLITRTK 226
Query: 234 YLDKCPNISRLL-----KNIKFSVALENEMM-KLILNNKQDRQFV 272
+ + P + K + A +E + K D + V
Sbjct: 227 FAKEHPELVEKFLEVYEKARVWQDANLDEAIKVYTSVKKIDAEIV 271
>gi|30021028|ref|NP_832659.1| alkanesulfonates-binding protein [Bacillus cereus ATCC 14579]
gi|229128257|ref|ZP_04257238.1| aliphatic sulfonates-binding protein [Bacillus cereus BDRD-Cer4]
gi|29896581|gb|AAP09860.1| Alkanesulfonates-binding protein [Bacillus cereus ATCC 14579]
gi|228655116|gb|EEL10973.1| aliphatic sulfonates-binding protein [Bacillus cereus BDRD-Cer4]
Length = 328
Score = 45.2 bits (105), Expect = 0.012, Method: Composition-based stats.
Identities = 34/285 (11%), Positives = 76/285 (26%), Gaps = 32/285 (11%)
Query: 2 YKILAVCLFLTTFSISY----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL---G 54
+KIL+ L ++ + A ++ EE G
Sbjct: 5 FKILSFALAISVCLLGCEKSTASSKKEDVTIQIGIQQGLSPLLLAK-KKGWFEEEFKKEG 63
Query: 55 YKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
K P F ++ + +D P + A ++ +
Sbjct: 64 VKVKWTEFQSGPPYFEAIASNRLDFGEVGNSPVISAQAAGIGF---TEIANTSYARKGTG 120
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+ V +K EL K + G+ + ++ K +I+
Sbjct: 121 ILVQKDSKIASVK----------ELKGKKIAVAKGSSAFNLLYRALDKEGIDAKEVNVIQ 170
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+ + + + W+P LN + + + + + R+
Sbjct: 171 LQPD----EAQPAFESGSVDAWAIWDPFISLHTLNKGAKVIADGETLNVSSPEFLITRTK 226
Query: 234 YLDKCPNISRLL-----KNIKFSVALENEMM-KLILNNKQDRQFV 272
+ + P + K + A +E + K D + V
Sbjct: 227 FAKEHPELVEKFLKVYEKARVWQDANLDEAIKVYTSVKKIDAEIV 271
>gi|16759237|ref|NP_454854.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Typhi str. CT18]
gi|29140786|ref|NP_804128.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Typhi str. Ty2]
gi|213051825|ref|ZP_03344703.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Typhi str. E00-7866]
gi|213615740|ref|ZP_03371566.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Typhi str. E98-2068]
gi|213865225|ref|ZP_03387344.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Typhi str. M223]
gi|289830165|ref|ZP_06547587.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Typhi str. E98-3139]
gi|23396721|sp|Q8Z992|METQ_SALTI RecName: Full=D-methionine-binding lipoprotein metQ; Flags:
Precursor
gi|25298574|pir||AI0532 probable lipoprotein precursor STY0272 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16501528|emb|CAD08705.1| putative lipoprotein precursor [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29136410|gb|AAO67977.1| putative lipoprotein precursor [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
Length = 271
Score = 45.2 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 27/283 (9%), Positives = 69/283 (24%), Gaps = 24/283 (8%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K A L D P ++ + + + +E G +
Sbjct: 5 FKTFAAVGALIGSLALAGCGQDEKDPNHIKVGVIVGAEQQV-AEVAQKVAKEKYGLDVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V +L ID P L++ I + A Y +
Sbjct: 64 VTFNDYVLPNEALSKGDIDANAFQHKPYLDQQIKDRGYKLVSVGKTFVYPIAGYSKKIKS 123
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ + + + G ++ + + ++E +
Sbjct: 124 LDELKDGSQVAVPNDPTNLGRSLLLLQKVG------LIKLKDGVSLLPTSLDIVENPKNL 177
Query: 179 SFSQIR-----RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
++ R + A+ + + S + + G + V +V +
Sbjct: 178 KIVELEAPQLPRSLDDAQIALAVINTTYA--SQIGLTPAKDGIFVEDKDSPYVNLIVTRE 235
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
N+ + ++ + E + N +
Sbjct: 236 DNKDAENVKKFVQAYQ--SDEVYEAANKVFNGG-----AVKGW 271
>gi|330987248|gb|EGH85351.1| alkanesulfonate transporter substrate-binding subunit [Pseudomonas
syringae pv. lachrymans str. M301315]
Length = 311
Score = 45.2 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 34/254 (13%), Positives = 70/254 (27%), Gaps = 26/254 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSV--ILEEIL-GYKT 57
M + L + AD +R + T + +LE+ K
Sbjct: 1 MKPFTFIAAILAFSGLLNTASADEPDTLRIGYQK---GSITLVLAKEHGLLEKRFAATKV 57
Query: 58 N-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
I+ A P +L +DI P + +A
Sbjct: 58 KWIEFPAGPQMLEALNIGSLDIASTGDIPPIFAQVAGADL-------------VYIGAEP 104
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ + EL + ++ G+ + +L ++N + K + I +
Sbjct: 105 AKPQAETILVRNESPLHSVAELKGRKVALQKGSSSHNVVLRLLNKAGLTFKDIQPIYLTP 164
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
+ R N + W+P+ + H YT R + +
Sbjct: 165 ----ADARAAFENGSVDAWAIWDPYYSIALNEGHSRLLANGEGLGLSGPFYT-ARRAFAE 219
Query: 237 KCPN-ISRLLKNIK 249
K + ++L +
Sbjct: 220 KNAAFVQQVLDELT 233
>gi|152968884|ref|YP_001333993.1| taurine ABC transporter periplasmic substrate-binding protein
[Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
gi|238893293|ref|YP_002918027.1| taurine transport system periplasmic binding component [Klebsiella
pneumoniae NTUH-K2044]
gi|262042371|ref|ZP_06015533.1| taurine ABC superfamily ATP binding cassette transporter, binding
protein [Klebsiella pneumoniae subsp. rhinoscleromatis
ATCC 13884]
gi|330006840|ref|ZP_08305717.1| taurine ABC transporter, periplasmic binding protein [Klebsiella
sp. MS 92-3]
gi|150953733|gb|ABR75763.1| taurine transport protein (ABC superfamily, peri_bind) [Klebsiella
pneumoniae subsp. pneumoniae MGH 78578]
gi|238545609|dbj|BAH61960.1| taurine transport system periplasmic binding component [Klebsiella
pneumoniae subsp. pneumoniae NTUH-K2044]
gi|259040279|gb|EEW41388.1| taurine ABC superfamily ATP binding cassette transporter, binding
protein [Klebsiella pneumoniae subsp. rhinoscleromatis
ATCC 13884]
gi|328535721|gb|EGF62165.1| taurine ABC transporter, periplasmic binding protein [Klebsiella
sp. MS 92-3]
Length = 320
Score = 45.2 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 11/74 (14%), Positives = 22/74 (29%), Gaps = 1/74 (1%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I + W P + L ++ +G ++ VVR D+ ++ P
Sbjct: 160 AIIAAWQRGDIDGAYVWAPAVNELEKEGKVLTDSSQVGEWGAPTLDVWVVRKDFAEQHPE 219
Query: 241 ISRLLKNIKFSVAL 254
I +
Sbjct: 220 IVKAFAKSAIDAQQ 233
>gi|296503450|ref|YP_003665150.1| alkanesulfonates-binding protein [Bacillus thuringiensis BMB171]
gi|296324502|gb|ADH07430.1| alkanesulfonates-binding protein [Bacillus thuringiensis BMB171]
Length = 328
Score = 45.2 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 34/285 (11%), Positives = 76/285 (26%), Gaps = 32/285 (11%)
Query: 2 YKILAVCLFLTTFSISY----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL---G 54
+KIL+ L ++ + A ++ EE G
Sbjct: 5 FKILSFALAISVCLLGCEKSTASSKKEDVTIQIGIQQGLSPLLLAK-KKGWFEEEFKKEG 63
Query: 55 YKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
K P F ++ + +D P + A ++ +
Sbjct: 64 VKVKWTEFQSGPPYFEAIASNRLDFGEVGNSPVISAQAAGIGF---TEIANTSYARKGTG 120
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+ V +K EL K + G+ + ++ K +I+
Sbjct: 121 ILVQKDSKIASVK----------ELKGKKIAVAKGSSAFNLLYRALDKEGIDAKEVNVIQ 170
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+ + + + W+P LN + + + + + R+
Sbjct: 171 LQPD----EAQPAFESGSVDAWAIWDPFISLHTLNKGAKVIADGETLNVSSPEFLITRTK 226
Query: 234 YLDKCPNISRLL-----KNIKFSVALENEMM-KLILNNKQDRQFV 272
+ + P + K + A +E + K D + V
Sbjct: 227 FAKEHPELVEKFLKVYEKARVWQDANLDEAIKVYTSVKKIDAEIV 271
>gi|183597567|ref|ZP_02959060.1| hypothetical protein PROSTU_00848 [Providencia stuartii ATCC 25827]
gi|188023062|gb|EDU61102.1| hypothetical protein PROSTU_00848 [Providencia stuartii ATCC 25827]
Length = 273
Score = 45.2 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 27/286 (9%), Positives = 73/286 (25%), Gaps = 27/286 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSC-TPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+ I V L + + + + ++ ++ + + +E G +
Sbjct: 5 LKSIAVVGALLGSLVLVGCGEKEKDPNSIKVGVIMGKELEV-AEVAQKVAKEKYGLNVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V +L +D F + IK L
Sbjct: 64 VAFNDFVLPNETLSKGDLDA---------NAFQHKPYLDQQIKDRNYKLVPVGNTFIYPI 114
Query: 119 VGFALGIKSYQDIAKYKKEL---GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
++ IKS ++A + G Q ++ + ++E
Sbjct: 115 AAYSKQIKSVDELADGSQIALPNDPTNLGRSLLLLEKQGLIKLKEGTGLMPTALDVVENP 174
Query: 176 ELASFSQIR-----RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
+ F ++ R + A+ + ++ + G + V +V
Sbjct: 175 KNLKFVELEAPQLPRALDDKKIALAIINTTWASSATPKLTPAKDGLFVEDKDSPYVNIIV 234
Query: 231 RSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
D N+ + ++ + + + + +
Sbjct: 235 TRDDNKDNENVKKFVQAYQ--SDEVAKKADEVFDGG-----AVKGW 273
>gi|330891833|gb|EGH24494.1| alkanesulfonate transporter substrate-binding subunit [Pseudomonas
syringae pv. mori str. 301020]
Length = 311
Score = 45.2 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 33/253 (13%), Positives = 69/253 (27%), Gaps = 24/253 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSV--ILEEIL-GYKT 57
M + L + AD +R + T + +LE+ K
Sbjct: 1 MKPFTFIAAILAFSGLFGTAAADEPDTLRIGYQK---GSITLVLAKEHGLLEKRFAATKV 57
Query: 58 N-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
I+ A P +L +DI P + +A
Sbjct: 58 KWIEFQAGPQMLEALNIGSLDIASTGDIPPIFAQVAGADL-------------VYIGAEP 104
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ ++ EL + ++ G+ + +L ++N + K + I +
Sbjct: 105 AKPQAETILVRNENPLHSVAELKGRKVALQKGSSSHNVVLRLLNKAGLTFKDIQPIYLTP 164
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
+ R N + W+P+ + H YT R+
Sbjct: 165 ----ADARAAFENGSVDTWAIWDPYYSIALNEGHSRLLANGEGLGLSGPFYTARRAFAEK 220
Query: 237 KCPNISRLLKNIK 249
+ ++L +
Sbjct: 221 NAAFVQQVLDELT 233
>gi|16128190|ref|NP_414739.1| DL-methionine transporter subunit [Escherichia coli str. K-12
substr. MG1655]
gi|89107078|ref|AP_000858.1| DL-methionine transporter subunit [Escherichia coli str. K-12
substr. W3110]
gi|91209268|ref|YP_539254.1| DL-methionine transporter substrate-binding subunit [Escherichia
coli UTI89]
gi|110640418|ref|YP_668146.1| DL-methionine transporter substrate-binding subunit [Escherichia
coli 536]
gi|117622482|ref|YP_851395.1| DL-methionine transporter substrate-binding subunit [Escherichia
coli APEC O1]
gi|170021449|ref|YP_001726403.1| DL-methionine transporter substrate-binding subunit [Escherichia
coli ATCC 8739]
gi|170079834|ref|YP_001729154.1| receptor component of DL-methionine uptake transporter (MUT)
[Escherichia coli str. K-12 substr. DH10B]
gi|170680927|ref|YP_001742326.1| DL-methionine transporter substrate-binding subunit [Escherichia
coli SMS-3-5]
gi|188493665|ref|ZP_03000935.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Escherichia coli 53638]
gi|191171335|ref|ZP_03032884.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Escherichia coli F11]
gi|194435012|ref|ZP_03067253.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Shigella dysenteriae 1012]
gi|215485359|ref|YP_002327790.1| DL-methionine transporter substrate-binding subunit [Escherichia
coli O127:H6 str. E2348/69]
gi|218547653|ref|YP_002381444.1| DL-methionine transporter substrate-binding subunit [Escherichia
fergusonii ATCC 35469]
gi|218557139|ref|YP_002390052.1| DL-methionine transporter substrate-binding subunit [Escherichia
coli S88]
gi|218688073|ref|YP_002396285.1| DL-methionine transporter substrate-binding subunit [Escherichia
coli ED1a]
gi|218698850|ref|YP_002406479.1| DL-methionine transporter substrate-binding subunit [Escherichia
coli IAI39]
gi|227884889|ref|ZP_04002694.1| DL-methionine transporter substrate-binding subunit [Escherichia
coli 83972]
gi|237704357|ref|ZP_04534838.1| DL-methionine transporter subunit [Escherichia sp. 3_2_53FAA]
gi|238899596|ref|YP_002925392.1| DL-methionine transporter subunit [Escherichia coli BW2952]
gi|254037617|ref|ZP_04871694.1| D-methionine ABC transporter [Escherichia sp. 1_1_43]
gi|256025510|ref|ZP_05439375.1| DL-methionine transporter substrate-binding subunit [Escherichia
sp. 4_1_40B]
gi|300938607|ref|ZP_07153339.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 21-1]
gi|300949768|ref|ZP_07163743.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 116-1]
gi|300956083|ref|ZP_07168407.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 175-1]
gi|300977728|ref|ZP_07174022.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 45-1]
gi|300990445|ref|ZP_07179213.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 200-1]
gi|301025916|ref|ZP_07189402.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 69-1]
gi|301028693|ref|ZP_07191913.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 196-1]
gi|301046657|ref|ZP_07193788.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 185-1]
gi|301646523|ref|ZP_07246397.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 146-1]
gi|307136798|ref|ZP_07496154.1| DL-methionine transporter substrate-binding subunit [Escherichia
coli H736]
gi|312966335|ref|ZP_07780561.1| D-methionine-binding lipoprotein metQ [Escherichia coli 2362-75]
gi|312970299|ref|ZP_07784481.1| D-methionine-binding lipoprotein metQ [Escherichia coli 1827-70]
gi|331640652|ref|ZP_08341800.1| D-methionine-binding lipoprotein MetQ [Escherichia coli H736]
gi|331645341|ref|ZP_08346452.1| D-methionine-binding lipoprotein MetQ [Escherichia coli M605]
gi|331661269|ref|ZP_08362201.1| D-methionine-binding lipoprotein MetQ [Escherichia coli TA206]
gi|331671702|ref|ZP_08372500.1| D-methionine-binding lipoprotein MetQ [Escherichia coli TA280]
gi|331681583|ref|ZP_08382220.1| D-methionine-binding lipoprotein MetQ [Escherichia coli H299]
gi|401469|sp|P28635|METQ_ECOLI RecName: Full=D-methionine-binding lipoprotein metQ; Flags:
Precursor
gi|303560|dbj|BAA03657.1| ORF271 [Escherichia coli W3110]
gi|1552773|gb|AAB08625.1| hypothetical [Escherichia coli]
gi|1786396|gb|AAC73308.1| DL-methionine transporter subunit [Escherichia coli str. K-12
substr. MG1655]
gi|4902940|dbj|BAA77874.1| DL-methionine transporter subunit [Escherichia coli str. K12
substr. W3110]
gi|91070842|gb|ABE05723.1| D-methionine-binding transport system MetQ precursor [Escherichia
coli UTI89]
gi|110342010|gb|ABG68247.1| putative lipoprotein YaeC precursor [Escherichia coli 536]
gi|115511606|gb|ABI99680.1| D-methionine-binding lipoprotein MetQ [Escherichia coli APEC O1]
gi|169756377|gb|ACA79076.1| lipoprotein, YaeC family [Escherichia coli ATCC 8739]
gi|169887669|gb|ACB01376.1| receptor component of DL-methionine uptake transporter (MUT)
[Escherichia coli str. K-12 substr. DH10B]
gi|170518645|gb|ACB16823.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Escherichia coli SMS-3-5]
gi|188488864|gb|EDU63967.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Escherichia coli 53638]
gi|190908269|gb|EDV67859.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Escherichia coli F11]
gi|194416748|gb|EDX32876.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Shigella dysenteriae 1012]
gi|215263431|emb|CAS07751.1| DL-methionine transporter subunit [Escherichia coli O127:H6 str.
E2348/69]
gi|218355194|emb|CAQ87801.1| DL-methionine transporter subunit ; periplasmic-binding component
of ABC superfamily [Escherichia fergusonii ATCC 35469]
gi|218363908|emb|CAR01573.1| DL-methionine transporter subunit ; periplasmic-binding component
of ABC superfamily [Escherichia coli S88]
gi|218368836|emb|CAR16584.1| DL-methionine transporter subunit ; periplasmic-binding component
of ABC superfamily [Escherichia coli IAI39]
gi|218425637|emb|CAR06423.1| DL-methionine transporter subunit ; periplasmic-binding component
of ABC superfamily [Escherichia coli ED1a]
gi|222032028|emb|CAP74767.1| D-methionine-binding lipoprotein metQ [Escherichia coli LF82]
gi|226840723|gb|EEH72725.1| D-methionine ABC transporter [Escherichia sp. 1_1_43]
gi|226902269|gb|EEH88528.1| DL-methionine transporter subunit [Escherichia sp. 3_2_53FAA]
gi|227838138|gb|EEJ48604.1| DL-methionine transporter substrate-binding subunit [Escherichia
coli 83972]
gi|238860784|gb|ACR62782.1| DL-methionine transporter subunit [Escherichia coli BW2952]
gi|260450599|gb|ACX41021.1| lipoprotein, YaeC family [Escherichia coli DH1]
gi|281177423|dbj|BAI53753.1| methionine ABC transporter substrate binding component [Escherichia
coli SE15]
gi|294491891|gb|ADE90647.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Escherichia coli IHE3034]
gi|299878292|gb|EFI86503.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 196-1]
gi|300301392|gb|EFJ57777.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 185-1]
gi|300305745|gb|EFJ60265.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 200-1]
gi|300317077|gb|EFJ66861.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 175-1]
gi|300395771|gb|EFJ79309.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 69-1]
gi|300409813|gb|EFJ93351.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 45-1]
gi|300450833|gb|EFK14453.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 116-1]
gi|300456453|gb|EFK19946.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 21-1]
gi|301075276|gb|EFK90082.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 146-1]
gi|307552050|gb|ADN44825.1| D-methionine-binding transport system MetQ precursor [Escherichia
coli ABU 83972]
gi|307629774|gb|ADN74078.1| DL-methionine transporter substrate-binding subunit [Escherichia
coli UM146]
gi|310337797|gb|EFQ02908.1| D-methionine-binding lipoprotein metQ [Escherichia coli 1827-70]
gi|312289578|gb|EFR17472.1| D-methionine-binding lipoprotein metQ [Escherichia coli 2362-75]
gi|312944806|gb|ADR25633.1| DL-methionine transporter substrate-binding subunit [Escherichia
coli O83:H1 str. NRG 857C]
gi|315134888|dbj|BAJ42047.1| DL-methionine transporter substrate-binding subunit [Escherichia
coli DH1]
gi|315285269|gb|EFU44714.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 110-3]
gi|315295529|gb|EFU54855.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 153-1]
gi|315300670|gb|EFU59897.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 16-3]
gi|315616317|gb|EFU96935.1| D-methionine-binding lipoprotein metQ [Escherichia coli 3431]
gi|320180894|gb|EFW55816.1| Methionine ABC transporter substrate-binding protein [Shigella
boydii ATCC 9905]
gi|320196926|gb|EFW71547.1| Methionine ABC transporter substrate-binding protein [Escherichia
coli WV_060327]
gi|323935038|gb|EGB31411.1| YaeC family lipoprotein [Escherichia coli E1520]
gi|323939926|gb|EGB36124.1| YaeC family lipoprotein [Escherichia coli E482]
gi|323950803|gb|EGB46680.1| YaeC family lipoprotein [Escherichia coli H252]
gi|323955080|gb|EGB50856.1| YaeC family lipoprotein [Escherichia coli H263]
gi|323964909|gb|EGB60375.1| YaeC family lipoprotein [Escherichia coli M863]
gi|323975634|gb|EGB70730.1| YaeC family lipoprotein [Escherichia coli TW10509]
gi|324008229|gb|EGB77448.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 57-2]
gi|324014117|gb|EGB83336.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 60-1]
gi|324112391|gb|EGC06368.1| YaeC family lipoprotein [Escherichia fergusonii B253]
gi|327255177|gb|EGE66780.1| D-methionine-binding lipoprotein metQ [Escherichia coli STEC_7v]
gi|330910048|gb|EGH38558.1| methionine ABC transporter substrate-binding protein [Escherichia
coli AA86]
gi|331040398|gb|EGI12605.1| D-methionine-binding lipoprotein MetQ [Escherichia coli H736]
gi|331046098|gb|EGI18217.1| D-methionine-binding lipoprotein MetQ [Escherichia coli M605]
gi|331052311|gb|EGI24350.1| D-methionine-binding lipoprotein MetQ [Escherichia coli TA206]
gi|331071547|gb|EGI42904.1| D-methionine-binding lipoprotein MetQ [Escherichia coli TA280]
gi|331081804|gb|EGI52965.1| D-methionine-binding lipoprotein MetQ [Escherichia coli H299]
gi|332097596|gb|EGJ02573.1| D-methionine-binding lipoprotein metQ [Shigella dysenteriae 155-74]
gi|332341531|gb|AEE54865.1| DL-methionine transporter subunit MetQ [Escherichia coli UMNK88]
Length = 271
Score = 45.2 bits (105), Expect = 0.014, Method: Composition-based stats.
Identities = 25/283 (8%), Positives = 69/283 (24%), Gaps = 24/283 (8%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K A L D P ++ + + + ++ G +
Sbjct: 5 FKTFAAVGALIGSLALVGCGQDEKDPNHIKVGVIVGAEQQV-AEVAQKVAKDKYGLDVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V +L ID P L++ + + A Y +
Sbjct: 64 VTFNDYVLPNEALSKGDIDANAFQHKPYLDQQLKDRGYKLVAVGNTFVYPIAGYSKKIKS 123
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ + + + G ++ + + ++E +
Sbjct: 124 LDELQDGSQVAVPNDPTNLGRSLLLLQKVG------LIKLKDGVGLLPTVLDVVENPKNL 177
Query: 179 SFSQIR-----RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
++ R + A+ + + S + + G + V +V +
Sbjct: 178 KIVELEAPQLPRSLDDAQIALAVINTTYA--SQIGLTPAKDGIFVEDKESPYVNLIVTRE 235
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
N+ + ++ + E + N +
Sbjct: 236 DNKDAENVKKFVQAYQ--SDEVYEAANKVFNGG-----AVKGW 271
>gi|229030598|ref|ZP_04186633.1| aliphatic sulfonates-binding protein [Bacillus cereus AH1271]
gi|228730765|gb|EEL81710.1| aliphatic sulfonates-binding protein [Bacillus cereus AH1271]
Length = 328
Score = 45.2 bits (105), Expect = 0.014, Method: Composition-based stats.
Identities = 31/286 (10%), Positives = 80/286 (27%), Gaps = 31/286 (10%)
Query: 3 KILAVCLFLTTFSISY----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL---GY 55
K+L+ L ++ F + A ++ EE G
Sbjct: 6 KVLSFALAISLFLLGCEKSTASSKKEDVTIQIGIQQGLSPLLLAQ-KKGWFEEEFKKEGV 64
Query: 56 KTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
K P F ++ + +D P + A ++ + +
Sbjct: 65 KVKWTEFQSGPPYFEAIASNRLDFGEVGNSPVISAQAAGIEF---TEIANTSYARKGTGI 121
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
V + +K + K + G+ + + + K +I+
Sbjct: 122 LVQKDSKIMSVKDLKG----------KKIAVAKGSSAFNLLYRALEKEGINAKDVNVIQL 171
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDY 234
+ + + + W+P LN + + + + R+ +
Sbjct: 172 QPD----EAQPAFESGSVDAWAIWDPFISLHTLNKGAKVITDGERLNVSSPEFLIARTKF 227
Query: 235 LDKCPN-ISRLL----KNIKFSVALENEMMKLILNNKQDRQFVGRT 275
+ P + + L K + + +E +K+ + K+ + +
Sbjct: 228 AKEHPELVEKFLKVYEKARVWQESDLDEAIKIYTSAKKIDAEIVKE 273
>gi|238792726|ref|ZP_04636357.1| D-methionine-binding lipoprotein [Yersinia intermedia ATCC 29909]
gi|238727834|gb|EEQ19357.1| D-methionine-binding lipoprotein [Yersinia intermedia ATCC 29909]
Length = 271
Score = 44.8 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 25/268 (9%), Positives = 71/268 (26%), Gaps = 18/268 (6%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K +A L P ++ + + + ++ G +
Sbjct: 5 FKSIAAVSALIGTLALVGCGPAEKDPNHIKVGVIVGAEQQV-AEVAKKVAKDKYGLDVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V +L ID+ P L++ I + + A Y +
Sbjct: 64 VTFNDYVLPNEALSKGDIDLNAFQHKPYLDQQIKDRGYKLVSVGNSFVYPIAGYSKKIKS 123
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ + + + G ++ + + ++E +
Sbjct: 124 LEELQPGSQVALPNDPTNLGRSLLLLQKVG------LIKLKDGVGLLPTVLDVVENPKNL 177
Query: 179 SFSQIR-----RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
++ R + A+ + + S + + G + V +V +
Sbjct: 178 KLVELEAPQLPRSLDDQQIALAIINTTYA--SQIGLTPAKDGLFVEDKESPYVNLIVARE 235
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKL 261
N+ + ++ + S + + K
Sbjct: 236 DNKDAENVKKFVQAYQ-SDEVYDAANKA 262
>gi|206580502|ref|YP_002240177.1| taurine ABC transporter, periplasmic taurine-binding protein
[Klebsiella pneumoniae 342]
gi|288936923|ref|YP_003440982.1| taurine ABC transporter periplasmic binding protein [Klebsiella
variicola At-22]
gi|290510020|ref|ZP_06549390.1| taurine ABC transporter, periplasmic binding protein [Klebsiella
sp. 1_1_55]
gi|206569560|gb|ACI11336.1| taurine ABC transporter, periplasmic taurine-binding protein
[Klebsiella pneumoniae 342]
gi|288891632|gb|ADC59950.1| taurine ABC transporter, periplasmic binding protein [Klebsiella
variicola At-22]
gi|289776736|gb|EFD84734.1| taurine ABC transporter, periplasmic binding protein [Klebsiella
sp. 1_1_55]
Length = 320
Score = 44.8 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 11/74 (14%), Positives = 22/74 (29%), Gaps = 1/74 (1%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I + W P + L ++ +G ++ VVR D+ ++ P
Sbjct: 160 AIIAAWQRGDIDGAYVWAPAVNELEKEGKVLTDSAQVGEWGAPTLDVWVVRKDFAEQHPE 219
Query: 241 ISRLLKNIKFSVAL 254
I +
Sbjct: 220 IVKAFAKSAIDAQQ 233
>gi|283783986|ref|YP_003363851.1| D-methionine ABC transporter substrate-binding lipoprotein
[Citrobacter rodentium ICC168]
gi|282947440|emb|CBG86987.1| D-methionine ABC transporter, substrate-binding lipoprotein
[Citrobacter rodentium ICC168]
Length = 271
Score = 44.8 bits (104), Expect = 0.015, Method: Composition-based stats.
Identities = 32/286 (11%), Positives = 70/286 (24%), Gaps = 30/286 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K A L D P ++ ++ + + +E G +
Sbjct: 5 FKTFAAVGALIGSLALVGCGQDEKDPNHIKVGVIVGSEQQV-AEVAQKVAKEKYGLDVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V +L ID F + IK L A
Sbjct: 64 VTFNDYVLPNEALSKGDIDA---------NAFQHKPYLDQQIKDRGYKLVAAGNTFVYPI 114
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK--------FSLKGFR 170
G++ IKS ++ + + + + +I +
Sbjct: 115 AGYSKKIKSLDELQPGAQVAVPNDPTNLGRSLLLLQKVGLIKLKDGVGLLPTSLDIAENP 174
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
Q+ R + A+ + + S +N+ G + V +V
Sbjct: 175 KNLKIVELEAPQLPRSLDDAQIALAVINTTYA--SQINLTPAKDGIFVEDKDSPYVNLIV 232
Query: 231 RSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
+ N+ + ++ + E + N +
Sbjct: 233 TREDNKDAENVKKFVQAYQ--SDEVYEAANKVFNGG-----AVKGW 271
>gi|71738073|ref|YP_276948.1| alkanesulfonate transporter substrate-binding subunit [Pseudomonas
syringae pv. phaseolicola 1448A]
gi|71558626|gb|AAZ37837.1| sulfonate ABC transporter, periplasmic sulfonate-binding protein,
putative [Pseudomonas syringae pv. phaseolicola 1448A]
gi|320326297|gb|EFW82350.1| alkanesulfonate transporter substrate-binding subunit [Pseudomonas
syringae pv. glycinea str. B076]
gi|320331704|gb|EFW87642.1| alkanesulfonate transporter substrate-binding subunit [Pseudomonas
syringae pv. glycinea str. race 4]
Length = 311
Score = 44.8 bits (104), Expect = 0.015, Method: Composition-based stats.
Identities = 34/254 (13%), Positives = 70/254 (27%), Gaps = 26/254 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSV--ILEEIL-GYKT 57
M + L + AD +R + T + +LE+ K
Sbjct: 1 MKPFTFIAAILAFSGLLNTASADEPDTLRIGYQK---GSITLVLAKEHGLLEKRFAATKV 57
Query: 58 N-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
I+ A P +L +DI P + +A
Sbjct: 58 KWIEFPAGPQMLEALNIGSLDIASTGDIPPIFAQVAGADL-------------VYIGAEP 104
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ + EL + ++ G+ + +L ++N + K + I +
Sbjct: 105 AKPQAETILVRNESPLHSVAELKGRKVALQKGSSSHNVVLRLLNKAGLTFKDIQPIYLTP 164
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
+ R N + W+P+ + H YT R + +
Sbjct: 165 ----ADARAAFENGSVDAWAIWDPYYSIALNEGHSRLLANGEGLGLSGPFYT-ARRAFAE 219
Query: 237 KCPN-ISRLLKNIK 249
K + ++L +
Sbjct: 220 KNAAFVQQVLDELT 233
>gi|182416933|ref|ZP_02948317.1| taurine-binding periplasmic protein [Clostridium butyricum 5521]
gi|237669086|ref|ZP_04529070.1| taurine-binding periplasmic protein (Sulfate starvation-induced
protein 1) (SSI1) [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182379231|gb|EDT76732.1| taurine-binding periplasmic protein [Clostridium butyricum 5521]
gi|237657434|gb|EEP54990.1| taurine-binding periplasmic protein (Sulfate starvation-induced
protein 1) (SSI1) [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 345
Score = 44.8 bits (104), Expect = 0.015, Method: Composition-based stats.
Identities = 36/263 (13%), Positives = 77/263 (29%), Gaps = 32/263 (12%)
Query: 1 MYKIL--AVCLFLTTFSISYARDADSC---------TPVRFADTGWTDIAATTAMTSVIL 49
+ KI+ + ++ I S +
Sbjct: 3 LKKIISGILVGIISVVIIGCGSSYTSSSSNTSSKIPEVINIGTQQMPTDETLAR-AKDFF 61
Query: 50 EEILGYKTNIKLLAVP-VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQ 108
E LG K NI +L + ID + P++ E + ++
Sbjct: 62 SEELGVKVNITEFDSGKDVNNALASNSIDFGLMGSTPAVVGISNNIPLE---VIWIHDVI 118
Query: 109 GAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
G LAV + IK K + + + +L+ + N K
Sbjct: 119 GDVEALAVKNNSNINEIKDLVG----------KKIAVPTSSTAHYSLLNALRINNVPEKD 168
Query: 169 FRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYT 228
+++ I + WEP + + +++ G +
Sbjct: 169 VTILDMQPN----DIYAAWQRGDIDGAYVWEPTLSKLQDDGKIIITSRQLAEQGVLTCDV 224
Query: 229 -VVRSDYLDKCPN-ISRLLKNIK 249
VVR ++ +K P+ +++ +K ++
Sbjct: 225 EVVRKEFAEKYPDLVTKYIKALE 247
>gi|153837782|ref|ZP_01990449.1| extracellular tungstate binding protein [Vibrio parahaemolyticus
AQ3810]
gi|149748887|gb|EDM59722.1| extracellular tungstate binding protein [Vibrio parahaemolyticus
AQ3810]
Length = 272
Score = 44.8 bits (104), Expect = 0.015, Method: Composition-based stats.
Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 7/97 (7%)
Query: 1 MYKI-LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYK 56
M KI L + T A A VR A T + + +L E+ GYK
Sbjct: 1 MKKIALTLAATSITLVSYSAFSAQDAEHVRLAT---TTSTYHSGLLDYLLPQFEKDTGYK 57
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP 93
++ + +N +D+ M + + F+
Sbjct: 58 VDVIAAGTGKALKMGENGDVDLVMTHAPKAEGTFVEK 94
>gi|218904036|ref|YP_002451870.1| putative sulfonate ABC transporter, sulfonate-binding protein
[Bacillus cereus AH820]
gi|218538133|gb|ACK90531.1| putative sulfonate ABC transporter, sulfonate-binding protein
[Bacillus cereus AH820]
Length = 328
Score = 44.8 bits (104), Expect = 0.015, Method: Composition-based stats.
Identities = 32/287 (11%), Positives = 78/287 (27%), Gaps = 31/287 (10%)
Query: 2 YKILAVCLFLTTFSISY----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL---G 54
+K+L+ L ++ F A V+ EE G
Sbjct: 5 FKVLSFTLAISLFLFGCEKSTASSKKEDVTVQIGIQQGLSPLLLAQ-KKGWFEEEFKKEG 63
Query: 55 YKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
K P F ++ + +D P + A ++ +
Sbjct: 64 VKVKWTEFQSGPPYFEAIASNRLDFGEVGNSPVISAQAAGIEF---TEIANTSYARKGTG 120
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+ V +K EL K + G+ + ++ + K +I+
Sbjct: 121 ILVQKDSKITSVK----------ELKGKKIAVAKGSSAFNLLYRALDKEGINAKDVNVIQ 170
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+ + + + W+P +N + + + + R+
Sbjct: 171 LQPD----EAQPAFESGSVDAWAIWDPFISLHTVNKGAKVITDGERLNVSSPEFLIARTK 226
Query: 234 YLDKCPNISRLL-----KNIKFSVALENEMMKLILNNKQDRQFVGRT 275
+ + P + K + +E +K+ + K+ + +
Sbjct: 227 FAKEHPELVEKFLKVYEKARVWQDENLDEAIKIYTSAKKIDAEIVKE 273
>gi|307709945|ref|ZP_07646392.1| bacterial extracellular solute-binding family protein
[Streptococcus mitis SK564]
gi|307619316|gb|EFN98445.1| bacterial extracellular solute-binding family protein
[Streptococcus mitis SK564]
Length = 346
Score = 44.8 bits (104), Expect = 0.015, Method: Composition-based stats.
Identities = 39/283 (13%), Positives = 86/283 (30%), Gaps = 41/283 (14%)
Query: 1 MYKILAVC----LFLTTFSISY------ARDADSCTPVRFADTGWTDIAATTAMTSVILE 50
M KIL +FL+ S + + DS + + + + + E
Sbjct: 1 MKKILFFLSCGWIFLSLSGCSSPIEAETSTEKDSDSTLVVYSPN-PEDLIEETVPAF--E 57
Query: 51 EILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPS-----------LEKFIAPYLEEGS 99
E G K ++ + F+ + + + E +I+ ++
Sbjct: 58 EKYGIKVDLVQASTGELFKKAEAEKESPVADVIFGGSYALFSTNEKLFEPYISQENDQII 117
Query: 100 IKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNE--------- 150
+ + Y L V+ + + I Y L K+ G +
Sbjct: 118 PEYQNKTGFYTPYTLDVSVIIANSALTKDIKIEGYNDLLNPKLKGKIATADPSNASSAFA 177
Query: 151 ------GNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWE--PHP 202
+Q + + F L++ +S S + + + AV L++E
Sbjct: 178 QLTNMLVDQGGYENEQAWTYVKNLFTLVDGKIASSSSNVYKAVADGEMAVGLTYEDPALK 237
Query: 203 INSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
+ +D + +E + F + V + ++D L
Sbjct: 238 LLNDGVDVKVIYPKEGTVFLPGNAAIVKNAKHMDNAKKFIDFL 280
>gi|269963051|ref|ZP_06177387.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269832183|gb|EEZ86306.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 272
Score = 44.8 bits (104), Expect = 0.015, Method: Composition-based stats.
Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 7/97 (7%)
Query: 1 MYKI-LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYK 56
M KI L + T A A +R A T + + +L E+ GYK
Sbjct: 1 MKKIALTLAATSITLVSYSAFSAQDGEHIRLAT---TTSTYHSGLLDYLLPQFEKDTGYK 57
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP 93
+I + +N +D+ M + + F+
Sbjct: 58 VDIIAAGTGKALKMGENGDVDLVMTHAPKAEGVFVEN 94
>gi|237729503|ref|ZP_04559984.1| DL-methionine transporter substrate-binding subunit [Citrobacter
sp. 30_2]
gi|226909232|gb|EEH95150.1| DL-methionine transporter substrate-binding subunit [Citrobacter
sp. 30_2]
Length = 271
Score = 44.8 bits (104), Expect = 0.015, Method: Composition-based stats.
Identities = 28/283 (9%), Positives = 69/283 (24%), Gaps = 24/283 (8%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K A L D P ++ + + + +E G +
Sbjct: 5 FKTFAAVGALIGSLALVGCGQDEKDPNHIKVGVIVGAEQQV-AEVAQKVAKEKYGLDVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V +L ID P L++ I + A Y +
Sbjct: 64 VTFNDYVLPNEALSKGDIDANAFQHKPYLDQQIKDRGYKLVAVGNTFVYPIAGYSKKIKS 123
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ + + + G ++ + + +IE +
Sbjct: 124 LDELQDGSQVAIPNDPTNLGRSLLLLQKVG------LIKLKDGVGLLPTALDVIENPKNL 177
Query: 179 SFSQIR-----RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
++ R + A+ + + S + + G + V +V +
Sbjct: 178 KLVELEAPQLPRSLDDAQIALAVINTTYA--SQIGLTPAKDGIFVEDKDSPYVNLIVTRE 235
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
N+ + ++ + E + N +
Sbjct: 236 DNKDAENVKKFVEAYQ--SDEVYEAANKVFNGG-----AVKGW 271
>gi|13473833|ref|NP_105401.1| aliphatic sulfonate binding protein [Mesorhizobium loti MAFF303099]
gi|14024584|dbj|BAB51187.1| aliphatic sulfonate binding protein [Mesorhizobium loti MAFF303099]
Length = 317
Score = 44.8 bits (104), Expect = 0.015, Method: Composition-based stats.
Identities = 27/274 (9%), Positives = 62/274 (22%), Gaps = 28/274 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL---GYKTN 58
++ + L + +S+ A + T + ++E+ L G
Sbjct: 6 RRVFGIGLLAASIGLSFGAAAQELKQLNIGYQK-TGLPVIAR-QQQVIEKALSDKGVAVK 63
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
N + W + A G + V
Sbjct: 64 WVEFTAGPPLVEALN--VGAIDAGWTGDAPPIFGQSAGANIVYAAALPSNGDGEAIFVKP 121
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ + K G+ G + ++ + + S
Sbjct: 122 ASPVQSVADLKG----------KRVGVGKGTSAHNLLVAALEKAGVPFDQVTPVYLSPAD 171
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+ + + + W+P ++ + Y + D+
Sbjct: 172 AAAAFAS----DQIDAWAVWDPFFAIAETRYQPRVLARSSEVLKVNT-YFLANKDFAKAH 226
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
P I I ++A E K N+
Sbjct: 227 PEI------ITTTIAALGEAAKWADQNRDKVAEA 254
>gi|65320195|ref|ZP_00393154.1| COG0715: ABC-type nitrate/sulfonate/bicarbonate transport systems,
periplasmic components [Bacillus anthracis str. A2012]
Length = 328
Score = 44.8 bits (104), Expect = 0.015, Method: Composition-based stats.
Identities = 34/287 (11%), Positives = 80/287 (27%), Gaps = 31/287 (10%)
Query: 2 YKILAVCLFLTTFSISY----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL---G 54
+K+L+ L ++ F A V+ EE G
Sbjct: 5 FKVLSFTLAISLFLFGCEKSTASSKKEDVTVQIGIQQGLSPLLLAQ-KKGWFEEXFKKEG 63
Query: 55 YKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
K P F ++ + +D P + A ++ +
Sbjct: 64 VKVKWTEFQSGPPYFEAIASNRLDFGEVGNSPVISAQAAGIGF---TEIANTSYARKGTG 120
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+ V IK EL K + G+ + ++ + K +I+
Sbjct: 121 ILVQKDSKITSIK----------ELKGKKIAVAKGSSAFNLLYRALDKEGINAKDVNVIQ 170
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+ + + + W+P +N + + + + R+
Sbjct: 171 LXPD----EAQPAFESGSVDAWAIWDPFISLHTVNKGAKVITDGERLNVSSPEFLIARTK 226
Query: 234 YLDKCPN-ISRLL----KNIKFSVALENEMMKLILNNKQDRQFVGRT 275
+ + P + + L K + +E +K+ + K+ + +
Sbjct: 227 FAKEHPELVEKFLKVYEKARVWQDENLDEAIKIYTSAKKIDAEIVKE 273
>gi|255745037|ref|ZP_05418987.1| ABC-type tungstate transport system binding protein [Vibrio
cholera CIRS 101]
gi|262161677|ref|ZP_06030695.1| ABC-type tungstate transport system binding protein [Vibrio
cholerae INDRE 91/1]
gi|262169555|ref|ZP_06037246.1| ABC-type tungstate transport system binding protein [Vibrio
cholerae RC27]
gi|255737508|gb|EET92903.1| ABC-type tungstate transport system binding protein [Vibrio
cholera CIRS 101]
gi|262021789|gb|EEY40499.1| ABC-type tungstate transport system binding protein [Vibrio
cholerae RC27]
gi|262028409|gb|EEY47064.1| ABC-type tungstate transport system binding protein [Vibrio
cholerae INDRE 91/1]
Length = 271
Score = 44.8 bits (104), Expect = 0.016, Method: Composition-based stats.
Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 6/95 (6%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYKT 57
M K + +SY+ + +R A T + + +L E+ GYK
Sbjct: 1 MKKTTFTLAAASLILVSYSASSADDARIRLAT---TTSTYDSGLLDYLLPKFEQDTGYKV 57
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIA 92
++ + +N +D+ M + + F+
Sbjct: 58 DVIATGTGKALKMGENGDVDLVMTHAPKAEASFVE 92
>gi|24111633|ref|NP_706143.1| DL-methionine transporter substrate-binding subunit [Shigella
flexneri 2a str. 301]
gi|30061754|ref|NP_835925.1| DL-methionine transporter substrate-binding subunit [Shigella
flexneri 2a str. 2457T]
gi|74310818|ref|YP_309237.1| DL-methionine transporter substrate-binding subunit [Shigella
sonnei Ss046]
gi|82542796|ref|YP_406743.1| DL-methionine transporter substrate-binding subunit [Shigella
boydii Sb227]
gi|110804249|ref|YP_687769.1| DL-methionine transporter substrate-binding subunit [Shigella
flexneri 5 str. 8401]
gi|157159295|ref|YP_001461368.1| DL-methionine transporter substrate-binding subunit [Escherichia
coli E24377A]
gi|157159664|ref|YP_001456982.1| DL-methionine transporter substrate-binding subunit [Escherichia
coli HS]
gi|187733230|ref|YP_001879000.1| DL-methionine transporter substrate-binding subunit [Shigella
boydii CDC 3083-94]
gi|191167016|ref|ZP_03028838.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Escherichia coli B7A]
gi|193063224|ref|ZP_03044315.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Escherichia coli E22]
gi|193067670|ref|ZP_03048637.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Escherichia coli E110019]
gi|194428281|ref|ZP_03060823.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Escherichia coli B171]
gi|194439904|ref|ZP_03071966.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Escherichia coli 101-1]
gi|209917390|ref|YP_002291474.1| DL-methionine transporter substrate-binding subunit [Escherichia
coli SE11]
gi|218552778|ref|YP_002385691.1| DL-methionine transporter substrate-binding subunit [Escherichia
coli IAI1]
gi|218693663|ref|YP_002401330.1| DL-methionine transporter substrate-binding subunit [Escherichia
coli 55989]
gi|218703452|ref|YP_002410971.1| DL-methionine transporter substrate-binding subunit [Escherichia
coli UMN026]
gi|253774775|ref|YP_003037606.1| DL-methionine transporter substrate-binding subunit [Escherichia
coli 'BL21-Gold(DE3)pLysS AG']
gi|254160317|ref|YP_003043425.1| DL-methionine transporter substrate-binding subunit [Escherichia
coli B str. REL606]
gi|256021631|ref|ZP_05435496.1| DL-methionine transporter substrate-binding subunit [Shigella sp.
D9]
gi|260842429|ref|YP_003220207.1| DL-methionine transporter subunit MetQ [Escherichia coli O103:H2
str. 12009]
gi|260853408|ref|YP_003227299.1| DL-methionine transporter subunit MetQ [Escherichia coli O26:H11
str. 11368]
gi|260866346|ref|YP_003232748.1| DL-methionine transporter subunit MetQ [Escherichia coli O111:H-
str. 11128]
gi|293403267|ref|ZP_06647364.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli FVEC1412]
gi|293418083|ref|ZP_06660705.1| D-methionine transport system substrate-binding protein
[Escherichia coli B185]
gi|293476856|ref|ZP_06665264.1| D-methionine transport system substrate-binding protein
[Escherichia coli B088]
gi|298378803|ref|ZP_06988687.1| D-methionine transport system substrate-binding protein
[Escherichia coli FVEC1302]
gi|300900760|ref|ZP_07118906.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 198-1]
gi|300902018|ref|ZP_07120045.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 84-1]
gi|300920115|ref|ZP_07136568.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 115-1]
gi|300921807|ref|ZP_07137967.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 182-1]
gi|300932156|ref|ZP_07147439.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 187-1]
gi|301325163|ref|ZP_07218693.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 78-1]
gi|306815203|ref|ZP_07449352.1| DL-methionine transporter substrate-binding subunit [Escherichia
coli NC101]
gi|307311354|ref|ZP_07590996.1| lipoprotein, YaeC family [Escherichia coli W]
gi|309796376|ref|ZP_07690785.1| hypothetical protein HMPREF9348_03607 [Escherichia coli MS 145-7]
gi|331651103|ref|ZP_08352131.1| D-methionine-binding lipoprotein MetQ [Escherichia coli M718]
gi|331661572|ref|ZP_08362496.1| D-methionine-binding lipoprotein MetQ [Escherichia coli TA143]
gi|331666443|ref|ZP_08367324.1| D-methionine-binding lipoprotein MetQ [Escherichia coli TA271]
gi|331680779|ref|ZP_08381438.1| D-methionine-binding lipoprotein MetQ [Escherichia coli H591]
gi|332282872|ref|ZP_08395285.1| DL-methionine transporter substrate-binding subunit [Shigella sp.
D9]
gi|24050404|gb|AAN41850.1| putative lipoprotein [Shigella flexneri 2a str. 301]
gi|30039996|gb|AAP15730.1| putative lipoprotein [Shigella flexneri 2a str. 2457T]
gi|73854295|gb|AAZ87002.1| putative lipoprotein [Shigella sonnei Ss046]
gi|81244207|gb|ABB64915.1| putative lipoprotein [Shigella boydii Sb227]
gi|110613797|gb|ABF02464.1| putative lipoprotein [Shigella flexneri 5 str. 8401]
gi|157065344|gb|ABV04599.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Escherichia coli HS]
gi|157081325|gb|ABV21033.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Escherichia coli E24377A]
gi|187430222|gb|ACD09496.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Shigella boydii CDC 3083-94]
gi|190902909|gb|EDV62636.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Escherichia coli B7A]
gi|192931132|gb|EDV83735.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Escherichia coli E22]
gi|192959082|gb|EDV89518.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Escherichia coli E110019]
gi|194413656|gb|EDX29936.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Escherichia coli B171]
gi|194421150|gb|EDX37175.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Escherichia coli 101-1]
gi|209910649|dbj|BAG75723.1| methionine ABC transporter substrate binding component [Escherichia
coli SE11]
gi|218350395|emb|CAU96080.1| DL-methionine transporter subunit ; periplasmic-binding component
of ABC superfamily [Escherichia coli 55989]
gi|218359546|emb|CAQ97086.1| DL-methionine transporter subunit ; periplasmic-binding component
of ABC superfamily [Escherichia coli IAI1]
gi|218430549|emb|CAR11415.1| DL-methionine transporter subunit ; periplasmic-binding component
of ABC superfamily [Escherichia coli UMN026]
gi|242376029|emb|CAQ30712.1| metQ, subunit of L-and D-methionine uptake ABC permease
[Escherichia coli BL21(DE3)]
gi|253325819|gb|ACT30421.1| lipoprotein, YaeC family [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|253972218|gb|ACT37889.1| DL-methionine transporter subunit [Escherichia coli B str. REL606]
gi|253976427|gb|ACT42097.1| DL-methionine transporter subunit [Escherichia coli BL21(DE3)]
gi|257752057|dbj|BAI23559.1| DL-methionine transporter subunit MetQ [Escherichia coli O26:H11
str. 11368]
gi|257757576|dbj|BAI29073.1| DL-methionine transporter subunit MetQ [Escherichia coli O103:H2
str. 12009]
gi|257762702|dbj|BAI34197.1| DL-methionine transporter subunit MetQ [Escherichia coli O111:H-
str. 11128]
gi|281599553|gb|ADA72537.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Shigella flexneri 2002017]
gi|284919973|emb|CBG33028.1| D-methionine ABC transporter, substrate-binding lipoprotein
[Escherichia coli 042]
gi|291321309|gb|EFE60751.1| D-methionine transport system substrate-binding protein
[Escherichia coli B088]
gi|291430182|gb|EFF03196.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli FVEC1412]
gi|291430801|gb|EFF03799.1| D-methionine transport system substrate-binding protein
[Escherichia coli B185]
gi|298281137|gb|EFI22638.1| D-methionine transport system substrate-binding protein
[Escherichia coli FVEC1302]
gi|300355745|gb|EFJ71615.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 198-1]
gi|300405904|gb|EFJ89442.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 84-1]
gi|300412849|gb|EFJ96159.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 115-1]
gi|300421802|gb|EFK05113.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 182-1]
gi|300460093|gb|EFK23586.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 187-1]
gi|300847969|gb|EFK75729.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 78-1]
gi|305850865|gb|EFM51320.1| DL-methionine transporter substrate-binding subunit [Escherichia
coli NC101]
gi|306908333|gb|EFN38831.1| lipoprotein, YaeC family [Escherichia coli W]
gi|308120080|gb|EFO57342.1| hypothetical protein HMPREF9348_03607 [Escherichia coli MS 145-7]
gi|309700405|emb|CBI99694.1| D-methionine ABC transporter, substrate-binding lipoprotein
[Escherichia coli ETEC H10407]
gi|313646741|gb|EFS11200.1| D-methionine-binding lipoprotein metQ [Shigella flexneri 2a str.
2457T]
gi|315059416|gb|ADT73743.1| DL-methionine transporter subunit [Escherichia coli W]
gi|320173321|gb|EFW48524.1| Methionine ABC transporter substrate-binding protein [Shigella
dysenteriae CDC 74-1112]
gi|320186620|gb|EFW61345.1| Methionine ABC transporter substrate-binding protein [Shigella
flexneri CDC 796-83]
gi|320200275|gb|EFW74861.1| Methionine ABC transporter substrate-binding protein [Escherichia
coli EC4100B]
gi|323157963|gb|EFZ44065.1| D-methionine-binding lipoprotein metQ [Escherichia coli EPECa14]
gi|323160233|gb|EFZ46191.1| D-methionine-binding lipoprotein metQ [Escherichia coli E128010]
gi|323165902|gb|EFZ51684.1| D-methionine-binding lipoprotein metQ [Shigella sonnei 53G]
gi|323170990|gb|EFZ56639.1| D-methionine-binding lipoprotein metQ [Escherichia coli LT-68]
gi|323176515|gb|EFZ62107.1| D-methionine-binding lipoprotein metQ [Escherichia coli 1180]
gi|323181615|gb|EFZ67030.1| D-methionine-binding lipoprotein metQ [Escherichia coli 1357]
gi|323380025|gb|ADX52293.1| lipoprotein, YaeC family [Escherichia coli KO11]
gi|323945676|gb|EGB41725.1| YaeC family lipoprotein [Escherichia coli H120]
gi|323959959|gb|EGB55606.1| YaeC family lipoprotein [Escherichia coli H489]
gi|323970677|gb|EGB65933.1| YaeC family lipoprotein [Escherichia coli TA007]
gi|324019412|gb|EGB88631.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 117-3]
gi|324118319|gb|EGC12214.1| YaeC family lipoprotein [Escherichia coli E1167]
gi|331051557|gb|EGI23606.1| D-methionine-binding lipoprotein MetQ [Escherichia coli M718]
gi|331061487|gb|EGI33450.1| D-methionine-binding lipoprotein MetQ [Escherichia coli TA143]
gi|331066654|gb|EGI38531.1| D-methionine-binding lipoprotein MetQ [Escherichia coli TA271]
gi|331072242|gb|EGI43578.1| D-methionine-binding lipoprotein MetQ [Escherichia coli H591]
gi|332098773|gb|EGJ03733.1| D-methionine-binding lipoprotein metQ [Shigella boydii 3594-74]
gi|332105224|gb|EGJ08570.1| DL-methionine transporter substrate-binding subunit [Shigella sp.
D9]
gi|332762054|gb|EGJ92325.1| D-methionine-binding lipoprotein metQ [Shigella flexneri 2747-71]
gi|332762202|gb|EGJ92471.1| D-methionine-binding lipoprotein metQ [Shigella flexneri 4343-70]
gi|332765047|gb|EGJ95275.1| D-methionine-binding lipoprotein metQ [Shigella flexneri K-671]
gi|332768701|gb|EGJ98881.1| metQ [Shigella flexneri 2930-71]
gi|333009320|gb|EGK28776.1| D-methionine-binding lipoprotein metQ [Shigella flexneri K-218]
gi|333010693|gb|EGK30126.1| D-methionine-binding lipoprotein metQ [Shigella flexneri VA-6]
gi|333011039|gb|EGK30458.1| D-methionine-binding lipoprotein metQ [Shigella flexneri K-272]
gi|333021834|gb|EGK41083.1| D-methionine-binding lipoprotein metQ [Shigella flexneri K-227]
gi|333022186|gb|EGK41425.1| D-methionine-binding lipoprotein metQ [Shigella flexneri K-304]
Length = 271
Score = 44.8 bits (104), Expect = 0.016, Method: Composition-based stats.
Identities = 25/283 (8%), Positives = 69/283 (24%), Gaps = 24/283 (8%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K A L D P ++ + + + ++ G +
Sbjct: 5 FKTFAAVGALIGSLALVGCGQDEKDPNHIKVGVIVGAEQQV-AEVAQKVAKDKYGLDVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V +L ID P L++ + + A Y +
Sbjct: 64 VTFNDYVLPNEALSKGDIDANAFQHKPYLDQQLKDRGYKLVAVGNTFVYPIAGYSKKIKS 123
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ + + + G ++ + + ++E +
Sbjct: 124 LDELQDGSQVAVPNDPTNLGRSLLLLQKVG------LIKLKDGVGLLPTVLDVVENPKNL 177
Query: 179 SFSQIR-----RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
++ R + A+ + + S + + G + V +V +
Sbjct: 178 KIVELEAPQLPRSLDDAQIALAVINTTYA--SQIGLTPAKDGIFVEDKDSPYVNLIVTRE 235
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
N+ + ++ + E + N +
Sbjct: 236 DNKDAENVKKFVQAYQ--SDEVYEAANKVFNGG-----AVKGW 271
>gi|254774261|ref|ZP_05215777.1| LpqZ [Mycobacterium avium subsp. avium ATCC 25291]
Length = 289
Score = 44.8 bits (104), Expect = 0.016, Method: Composition-based stats.
Identities = 29/293 (9%), Positives = 64/293 (21%), Gaps = 25/293 (8%)
Query: 3 KILAVCLFLTTFSISYARDADSCT---PVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+++A L D V + L G+
Sbjct: 5 RLVAPLLTALLAVTGCTTDTGDRRAHAEVVVGSRPDASSTLLAGIYVAAL-RSYGFAARP 63
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
P L + + + L+ + + + D
Sbjct: 64 ATAGDPTA--QLDSGAFTVVPAFTGRVLQALQPGATAMSDKDVYRAMIAALPEGIVAGDY 121
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF------RLIE 173
A K +++ + + + ++ RL
Sbjct: 122 TTAAEDKPVLLVSRATAQAWGGSDVSADLSTLPRHCDGLVVGAVAGHPAPPAVGSCRLAA 181
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
E + + R + W + + +V + R +
Sbjct: 182 PHEFPDAATMFAAVRAGQ--LTAGWTTTADPGTPADLVALSDGKPALIRAENVVPLYRRN 239
Query: 234 YLDKCP-----NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHP 281
L + ++ +L A +M + + D Q V L HP
Sbjct: 240 ALSERQLLAINEVAGVL-----DTAALVDMRRQVDT-GADPQAVAGGWLAEHP 286
>gi|229080104|ref|ZP_04212632.1| aliphatic sulfonates-binding protein [Bacillus cereus Rock4-2]
gi|228703228|gb|EEL55686.1| aliphatic sulfonates-binding protein [Bacillus cereus Rock4-2]
Length = 328
Score = 44.8 bits (104), Expect = 0.016, Method: Composition-based stats.
Identities = 33/284 (11%), Positives = 76/284 (26%), Gaps = 32/284 (11%)
Query: 3 KILAVCLFLTTFSISY----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL---GY 55
KIL+ L ++ + A ++ EE G
Sbjct: 6 KILSFALAISVCLLGCEKSTASSKKEDVTIQIGIQQGLSPLLLAK-KKGWFEEEFKKEGV 64
Query: 56 KTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
K P F ++ + +D P + A ++ + +
Sbjct: 65 KVKWTEFQSGPPYFEAIASNRLDFGEVGNSPVISAQAAGIGF---TEIANTSYARKGTGI 121
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
V +K + K + G+ + ++ K +I+
Sbjct: 122 LVQKDSKIASVKDLKG----------KKIAVAKGSSAFNLLYRALDKEGIDAKDVNVIQL 171
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDY 234
+ + + + W+P LN + + + + + R+ +
Sbjct: 172 QPD----EAQPAFESGSVDAWAIWDPFISLHTLNKGAKVIADGETLNVSSPEFLITRTKF 227
Query: 235 LDKCPN-ISRLL----KNIKFSVALENEMM-KLILNNKQDRQFV 272
+ P + + L K + A +E + K D + V
Sbjct: 228 AKEHPELVEKFLKVYEKARVWQDANLDEAIKVYTSVKKIDAEIV 271
>gi|242238327|ref|YP_002986508.1| DL-methionine transporter substrate-binding subunit [Dickeya
dadantii Ech703]
gi|242130384|gb|ACS84686.1| lipoprotein, YaeC family [Dickeya dadantii Ech703]
Length = 271
Score = 44.8 bits (104), Expect = 0.016, Method: Composition-based stats.
Identities = 34/289 (11%), Positives = 78/289 (26%), Gaps = 38/289 (13%)
Query: 3 KILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
K A L + + P ++ + + + +E G +
Sbjct: 6 KSFAAVGALISVLALAGCGQEQKNPNHIKVGVIVGAEQQV-AEVAQKVAKEKYGLDVELV 64
Query: 61 LLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
V +L ID+ F + IK L
Sbjct: 65 TFNDYVLPNEALSKGDIDL---------NAFQHKPYLDQQIKDRGYKLVAVGNTFVYPIA 115
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQ-------RILDMINNNKFSLKGFRLI 172
G++ IKS D+ + +P N G ++ + +N ++
Sbjct: 116 GYSKKIKSINDLQNGSQIALPN----DPTNLGRSLLLLQKIGLIKLKDNIGLLPTALDIV 171
Query: 173 EASELASFSQIR-----RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
E + ++ R ++ A+ + + S +N+ G + V
Sbjct: 172 ENPKNLKLVELEAPQLPRSLDDDQIALAIINTTYA--SQINLTPAKDGLFVESKDSPYVN 229
Query: 228 TVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
+V + N+ + +K + + + + N +
Sbjct: 230 LLVARENNKDAENVKKFVKAYQ--SDEVEQAAQKVFNGG-----AVKGW 271
>gi|28898274|ref|NP_797879.1| hypothetical protein VP1501 [Vibrio parahaemolyticus RIMD
2210633]
gi|260361874|ref|ZP_05774883.1| extracellular tungstate binding protein [Vibrio parahaemolyticus
K5030]
gi|260878613|ref|ZP_05890968.1| extracellular tungstate binding protein [Vibrio parahaemolyticus
AN-5034]
gi|260896145|ref|ZP_05904641.1| extracellular tungstate binding protein [Vibrio parahaemolyticus
Peru-466]
gi|260899679|ref|ZP_05908074.1| extracellular tungstate binding protein [Vibrio parahaemolyticus
AQ4037]
gi|28806491|dbj|BAC59763.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD
2210633]
gi|308086189|gb|EFO35884.1| extracellular tungstate binding protein [Vibrio parahaemolyticus
Peru-466]
gi|308091010|gb|EFO40705.1| extracellular tungstate binding protein [Vibrio parahaemolyticus
AN-5034]
gi|308109461|gb|EFO47001.1| extracellular tungstate binding protein [Vibrio parahaemolyticus
AQ4037]
gi|308111401|gb|EFO48941.1| extracellular tungstate binding protein [Vibrio parahaemolyticus
K5030]
gi|328473715|gb|EGF44550.1| hypothetical protein VP10329_13670 [Vibrio parahaemolyticus
10329]
Length = 272
Score = 44.8 bits (104), Expect = 0.016, Method: Composition-based stats.
Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 7/97 (7%)
Query: 1 MYKI-LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYK 56
M KI L + T A A VR A T + + +L E+ GYK
Sbjct: 1 MKKIALTLAATSITLVSYSAFSAQDAEHVRLAT---TTSTYHSGLLDYLLPQFEKDTGYK 57
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP 93
++ + +N +D+ M + + F+
Sbjct: 58 VDVIAAGTGKALKMGENGDVDLVMTHAPKAEGTFVEK 94
>gi|15641531|ref|NP_231163.1| hypothetical protein VC1523 [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121587226|ref|ZP_01677000.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
gi|121726944|ref|ZP_01680145.1| conserved hypothetical protein [Vibrio cholerae V52]
gi|147674726|ref|YP_001217076.1| hypothetical protein VC0395_A1130 [Vibrio cholerae O395]
gi|153818520|ref|ZP_01971187.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
gi|153822805|ref|ZP_01975472.1| conserved hypothetical protein [Vibrio cholerae B33]
gi|227081681|ref|YP_002810232.1| hypothetical protein VCM66_1465 [Vibrio cholerae M66-2]
gi|229508530|ref|ZP_04398033.1| ABC-type tungstate transport system binding protein [Vibrio
cholerae BX 330286]
gi|229511400|ref|ZP_04400879.1| ABC-type tungstate transport system binding protein [Vibrio
cholerae B33]
gi|229518539|ref|ZP_04407982.1| ABC-type tungstate transport system binding protein [Vibrio
cholerae RC9]
gi|229607934|ref|YP_002878582.1| ABC-type tungstate transport system binding protein [Vibrio
cholerae MJ-1236]
gi|254848644|ref|ZP_05237994.1| conserved hypothetical protein [Vibrio cholerae MO10]
gi|298498390|ref|ZP_07008197.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
gi|9656028|gb|AAF94677.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121548569|gb|EAX58623.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
gi|121630706|gb|EAX63093.1| conserved hypothetical protein [Vibrio cholerae V52]
gi|126510923|gb|EAZ73517.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
gi|126519664|gb|EAZ76887.1| conserved hypothetical protein [Vibrio cholerae B33]
gi|146316609|gb|ABQ21148.1| conserved hypothetical protein [Vibrio cholerae O395]
gi|227009569|gb|ACP05781.1| conserved hypothetical protein [Vibrio cholerae M66-2]
gi|227013437|gb|ACP09647.1| conserved hypothetical protein [Vibrio cholerae O395]
gi|229343228|gb|EEO08203.1| ABC-type tungstate transport system binding protein [Vibrio
cholerae RC9]
gi|229351365|gb|EEO16306.1| ABC-type tungstate transport system binding protein [Vibrio
cholerae B33]
gi|229354484|gb|EEO19407.1| ABC-type tungstate transport system binding protein [Vibrio
cholerae BX 330286]
gi|229370589|gb|ACQ61012.1| ABC-type tungstate transport system binding protein [Vibrio
cholerae MJ-1236]
gi|254844349|gb|EET22763.1| conserved hypothetical protein [Vibrio cholerae MO10]
gi|297542723|gb|EFH78773.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
Length = 275
Score = 44.8 bits (104), Expect = 0.016, Method: Composition-based stats.
Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 6/95 (6%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYKT 57
M K + +SY+ + +R A T + + +L E+ GYK
Sbjct: 5 MKKTTFTLAAASLILVSYSASSADDARIRLAT---TTSTYDSGLLDYLLPKFEQDTGYKV 61
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIA 92
++ + +N +D+ M + + F+
Sbjct: 62 DVIATGTGKALKMGENGDVDLVMTHAPKAEASFVE 96
>gi|323177667|gb|EFZ63251.1| D-methionine-binding lipoprotein metQ [Escherichia coli 1180]
Length = 258
Score = 44.8 bits (104), Expect = 0.016, Method: Composition-based stats.
Identities = 20/249 (8%), Positives = 57/249 (22%), Gaps = 19/249 (7%)
Query: 9 LFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTF 68
+ + + ++ + + + +E G + + +
Sbjct: 1 MLAGILLAGCDQSSSDAKHIKVGVINGAEQDV-AEVAKKVAKEKYGLDVELVGFSGSLLP 59
Query: 69 RSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSY 128
N + F+ + KLVA G++ IK+
Sbjct: 60 NDATN---HGELDANVFQHRPFLEQDNQAHGYKLVAV-----GNTFVFPMAGYSKKIKTV 111
Query: 129 QDIAKYKKELGAKIYGIEPGNEGNQRILDMI---NNNKFSLKGFRLIEASELASFSQIRR 185
I + + +I + + ++
Sbjct: 112 AQIKEGATVAIPNDPTNLGRALLLLQKEKLITLKEGKGLLPTALDITDNPRHLQIMELEG 171
Query: 186 D-----QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ V + + + L+ + E V +V + N
Sbjct: 172 AQLPRVLDDPKVDVAIISTTYIQQTGLSPVHDSVFIEDKNSP--YVNILVAREDNKNAEN 229
Query: 241 ISRLLKNIK 249
+ L++ +
Sbjct: 230 VKEFLQSYQ 238
>gi|26246147|ref|NP_752186.1| DL-methionine transporter substrate-binding subunit [Escherichia
coli CFT073]
gi|26106544|gb|AAN78730.1|AE016755_230 D-methionine-binding lipoprotein metQ precursor [Escherichia coli
CFT073]
Length = 270
Score = 44.8 bits (104), Expect = 0.017, Method: Composition-based stats.
Identities = 30/289 (10%), Positives = 73/289 (25%), Gaps = 37/289 (12%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K A L D P ++ + + + ++ G +
Sbjct: 5 FKTFAAVGALIGSLALVGCGQDEKDPNHIKVGVIVGAEQQV-AEVAQKVAKDKYGLDVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V +L ID F + +K L
Sbjct: 64 VTFNDYVLPNEALSKGDIDA---------NAFQHKPYLDQQLKDRGYKLVAVGNTFVYPI 114
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQ------RILDMINNNKFSLKGFRLI 172
G++ IKS ++ + +P N G ++ + + ++
Sbjct: 115 AGYSKKIKSLDELQDGSQVAVPN----DPTNLGRSLLLQKVGLIKLKDGVGLLPTVLDVV 170
Query: 173 EASELASFSQIR-----RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
E + ++ R + A+ + + S + + G + V
Sbjct: 171 ENPKNLKIVELEAPQLPRSLDDAQIALAVINTTYA--SQIGLTPAKDGIFVEDKESPYVN 228
Query: 228 TVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
+V + N+ + ++ + E + N +
Sbjct: 229 LIVTREDNKDAENVKKFVQAYQ--SDEVYEAANKVFNGG-----AVKGW 270
>gi|291300471|ref|YP_003511749.1| extracellular solute-binding protein family 5 [Stackebrandtia
nassauensis DSM 44728]
gi|290569691|gb|ADD42656.1| extracellular solute-binding protein family 5 [Stackebrandtia
nassauensis DSM 44728]
Length = 573
Score = 44.8 bits (104), Expect = 0.017, Method: Composition-based stats.
Identities = 38/293 (12%), Positives = 85/293 (29%), Gaps = 29/293 (9%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEE--------ILGY 55
I + T +++ A AD+ P A + + LE I G
Sbjct: 12 IALAMVAALTVTMAGACTADTPKPETVASKPGEGGTV--RVFTQTLETLDPQRVYVITGL 69
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
+ + TF + + + + + +++ + G +
Sbjct: 70 NVSTLITRTLTTFTAKPGEKPKLVGDLATDTGKPNKDNTSWTYTLRDGVKWQDGTELSCE 129
Query: 116 VNDVGFALGIKSYQDIAKYK--KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
G + AK + + EG + + + + + R I
Sbjct: 130 DVRYGVLRNFDVRRKDAKITGGPSYPTEWLDVPEDYEGPKGDKSDKDLSGVTCENKRTIR 189
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDL-NIHYLPGGEEISGFGEASVYTVVRS 232
+ N+PA E H +D G ++S + + T R+
Sbjct: 190 FDLKEPQANFPSAV--NLPAFSPVPEQHDTWADYGEEPVSTGPYKLSSYKPSKGDTPGRA 247
Query: 233 DYLDKCPNISRLLKNIKFSVALE----NEMMKLILNNKQDRQFVGRTMLRTHP 281
+ +N + + + K+IL +D + V + ++ +P
Sbjct: 248 VFE----------RNRFWDSETDKIRDAKPDKIILELGKDPEEVAQQIVSDNP 290
>gi|329296371|ref|ZP_08253707.1| taurine transporter substrate binding subunit [Plautia stali
symbiont]
Length = 325
Score = 44.8 bits (104), Expect = 0.017, Method: Composition-based stats.
Identities = 30/284 (10%), Positives = 67/284 (23%), Gaps = 47/284 (16%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKL 61
K ++ A+ + V A + A + G + K
Sbjct: 5 KTISAVAAALALMTFQAQAVN----VTVAYQTSAEPAKVAQ-ADNTFAKDSGATVDWRKF 59
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ R+L + + I E + + G L V
Sbjct: 60 DSGASVLRALASGDVQIGNIGSSTLAVAGTQQLPIE---AFLLASQLGNSEALVVKKGIS 116
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
+ K+L K + + + +L + + +L+
Sbjct: 117 SP------------KDLIGKRIAVPFISTTHNSLLAALKHWGIKPTQVQLVNLQPP---- 160
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I + W P + + L ++ +G ++ VVR D+ + P
Sbjct: 161 AIIAAWQRGDIDGAYVWAPSVNEQEKDGKVLTDSSQVGQWGSPTLDVWVVRKDFAQQHPE 220
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLL 284
+ + +P+
Sbjct: 221 VVTAFARSAI---------------------AAQQAYTANPEQW 243
>gi|283835259|ref|ZP_06355000.1| hypothetical protein CIT292_09567 [Citrobacter youngae ATCC 29220]
gi|291068971|gb|EFE07080.1| hypothetical protein CIT292_09567 [Citrobacter youngae ATCC 29220]
Length = 271
Score = 44.8 bits (104), Expect = 0.017, Method: Composition-based stats.
Identities = 32/289 (11%), Positives = 73/289 (25%), Gaps = 36/289 (12%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K A L D P ++ + + + +E G +
Sbjct: 5 FKTFAAVGALIGSLALVGCGQDEKDPNHIKVGVIVGAEQQV-AEVAQKVAKEKYGLDVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V +L ID F + IK L A
Sbjct: 64 VTFNDYVLPNEALSKGDIDA---------NAFQHKPYLDQQIKDRGYKLVAAGNTFVYPI 114
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQ------RILDMINNNKFSLKGFRLI 172
G++ IKS ++ ++ I + ++ + + +I
Sbjct: 115 AGYSKKIKSLDEL---QEGSQVAIPNDPTNLGRSLLLLQKVGLIKLKDGVGLLPTALDVI 171
Query: 173 EASELASFSQIR-----RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
E + ++ R + A+ + + S + + G + V
Sbjct: 172 ENPKNLKLVELEAPQLPRSLDDAQIALAVINTTYA--SQIGLTPAKDGIFVEDKDSPYVN 229
Query: 228 TVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
+V + N+ + ++ + E + N +
Sbjct: 230 LIVTREDNKDAENVKKFVQAYQ--SDEVYEAANKVFNGG-----AVKGW 271
>gi|117164475|emb|CAJ88021.1| putative ABC-type taurine transport system,periplasmic component
[Streptomyces ambofaciens ATCC 23877]
Length = 349
Score = 44.8 bits (104), Expect = 0.017, Method: Composition-based stats.
Identities = 38/344 (11%), Positives = 90/344 (26%), Gaps = 59/344 (17%)
Query: 4 ILAVCLFLTTFSISYARDADSC-----TPVRFADTGWTDIAATTAMTS--VILEEIL-GY 55
+LA L + + +++ D +R + + +LE+ L GY
Sbjct: 13 LLAGALGVASAAVTGCSSNDEGSSGGAKRLRIGYFAFPSGDL---IVKNRKLLEKALPGY 69
Query: 56 KTN-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
+ IK + ++ K +DI P + + ++ G L
Sbjct: 70 EITWIKFDSGASVNQAFLGKALDIAALGSSPFARGLSGASPIPYKVAWI-LDVAGDNEAL 128
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
+ + + + + +L + +L++
Sbjct: 129 VARKDTGVSDVAGLKG----------RTVATPFASTSHYSLLAALETAGLEASDVKLVDL 178
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY-TVVRSD 233
A + + W P L +++ G+ ++ VV D
Sbjct: 179 QPQAILA----AWQRGDIDATYVWLPTLDELRKTGRQLTSSKQVGAAGKPTLDLAVVSDD 234
Query: 234 YLDKCPNISRLLKN-----IKF----SVALENEMMKLILNNKQD------------RQFV 272
+ + P + ++ + + + +K D + V
Sbjct: 235 LIARDPKAIEAWRKSEAEALRLLKSDPDGAVDAVSAELGISKTDARAQLAQGVFLTPEQV 294
Query: 273 GR-TML--RTHPDLL-------KNWLIGVTTFDGQDPSRQLERF 306
L +P L +L G D + +
Sbjct: 295 TSPDWLGTDGNPGRLLSYVTDTARFLAGQKQIDAAPSAAAIRDA 338
>gi|320540055|ref|ZP_08039711.1| putative DL-methionine transporter subunit [Serratia symbiotica
str. Tucson]
gi|320029904|gb|EFW11927.1| putative DL-methionine transporter subunit [Serratia symbiotica
str. Tucson]
Length = 271
Score = 44.8 bits (104), Expect = 0.017, Method: Composition-based stats.
Identities = 28/278 (10%), Positives = 70/278 (25%), Gaps = 14/278 (5%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K +A L D P + + + + +E G +
Sbjct: 5 FKSIAAIGALIGTLALAGCGQDEKDPNHITVGVIIGAEQQV-AEIAQKVAKEKYGLDVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V +L ID+ + P L + I + A Y +
Sbjct: 64 VTFNDYVLPNEALSKGDIDLNIFQHKPYLNQQIKDRGYKLVSVGSTFVYPIAGYSKKIKS 123
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ + + + G + + ++ +
Sbjct: 124 LDELKSGSQIALPNDPTNLGRSLLLLQQVGLITLKEGVGLLPTK-LDVTENPKNLKLVEL 182
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
Q+ R + A+ + + S + + + V +V + D+
Sbjct: 183 EAPQLPRSLDDQQIALAVINTTYA--SQIGLTPTKDSLFVENKDSPYVNLMVAREDNDEA 240
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
N+ + +++ + NE I + +
Sbjct: 241 ENVKKFVQSYQ--SDDVNEAANKIFSGG-----AVKGW 271
>gi|299772081|ref|YP_003734107.1| ABC-type nitrate/sulfonate/bicarbonate transport system protein,
periplasmic component [Acinetobacter sp. DR1]
gi|298702169|gb|ADI92734.1| ABC-type nitrate/sulfonate/bicarbonate transport system protein,
periplasmic component [Acinetobacter sp. DR1]
Length = 327
Score = 44.8 bits (104), Expect = 0.018, Method: Composition-based stats.
Identities = 30/275 (10%), Positives = 78/275 (28%), Gaps = 31/275 (11%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSV--ILEEIL-GYKTN 58
+I AV + T + + +R + + A+ + E+ K
Sbjct: 17 KRISAVAVLGLTIAAPAWAIDPTVKELRIG---FQKSSINFAIAKQQKLFEQEFPNAKVT 73
Query: 59 IKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
P +L +D+ + P A + + E + + V
Sbjct: 74 WNEFPAGPQILEALAVGSLDVGVTGDTP---PVYAQAAGKPLYYIAYEAAKPLASAILVP 130
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
K K+L K ++ G+ + ++ + + I +
Sbjct: 131 K----------NSQLKQLKDLKGKRIALQKGSSSHYLLVQAVRKAGLNWSDITPIWLTP- 179
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDK 237
+ R + + W+P+ ++ L + + + D++ +
Sbjct: 180 ---ADARAAFQKGAVDAWAIWDPYFASAQLEDQARVLASGKGLSPNYT-FYLAAPDFVKQ 235
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
P L + N+ K + +++ +
Sbjct: 236 HPKAVSGL------IKQINQADKWVQSHQAETATA 264
>gi|229070393|ref|ZP_04203637.1| aliphatic sulfonates-binding protein [Bacillus cereus F65185]
gi|228712689|gb|EEL64620.1| aliphatic sulfonates-binding protein [Bacillus cereus F65185]
Length = 328
Score = 44.8 bits (104), Expect = 0.018, Method: Composition-based stats.
Identities = 32/284 (11%), Positives = 74/284 (26%), Gaps = 32/284 (11%)
Query: 3 KILAVCLFLTTFSISY----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL---GY 55
KIL+ L ++ + A ++ EE G
Sbjct: 6 KILSFALAISVCLLGCEKSTASSKKEDVTIQIGIQQGLSPLLLAK-KKGWFEEEFKKEGV 64
Query: 56 KTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
K P F ++ + +D P + A ++ + +
Sbjct: 65 KVKWTEFQSGPPYFEAIASNRLDFGEVGNSPVISAQAAGIGF---TEIANTSYARKGTGI 121
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
V +K + K + G+ + ++ K +I+
Sbjct: 122 LVQKDSKIASVKDLKG----------KKIAVAKGSSAFNLLYRALDKEGIDAKDVNVIQL 171
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDY 234
+ + + + W+P LN + + + + + R+ +
Sbjct: 172 QPD----EAQPAFESGSVDAWAIWDPFISLHTLNKGAKVIADGETLNVSSPEFLITRTKF 227
Query: 235 LDKCPNISRLL-----KNIKFSVALENEMM-KLILNNKQDRQFV 272
+ P + K + A +E + K D + V
Sbjct: 228 AKEHPELVEKFLKVYEKARVWQDANLDEAIKVYTSVKKIDAEIV 271
>gi|75762928|ref|ZP_00742733.1| Alkanesulfonates-binding protein [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|218897994|ref|YP_002446405.1| putative sulfonate ABC transporter, sulfonate-binding protein
[Bacillus cereus G9842]
gi|228901455|ref|ZP_04065640.1| aliphatic sulfonates-binding protein [Bacillus thuringiensis IBL
4222]
gi|228965856|ref|ZP_04126930.1| aliphatic sulfonates-binding protein [Bacillus thuringiensis
serovar sotto str. T04001]
gi|74489585|gb|EAO52996.1| Alkanesulfonates-binding protein [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|218543774|gb|ACK96168.1| putative sulfonate ABC transporter, sulfonate-binding protein
[Bacillus cereus G9842]
gi|228793847|gb|EEM41376.1| aliphatic sulfonates-binding protein [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228858163|gb|EEN02638.1| aliphatic sulfonates-binding protein [Bacillus thuringiensis IBL
4222]
Length = 328
Score = 44.8 bits (104), Expect = 0.018, Method: Composition-based stats.
Identities = 31/285 (10%), Positives = 75/285 (26%), Gaps = 32/285 (11%)
Query: 2 YKILAVCLFLTTFSISY----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL---G 54
+K+L+ L ++ + A ++ EE G
Sbjct: 5 FKVLSFALAISVCLLGCEKSTASSKKEDVTIQIGIQQGLSPLLLAK-KKGWFEEEFKKEG 63
Query: 55 YKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
K P F ++ + +D P + A ++ +
Sbjct: 64 VKVKWTEFQSGPPYFEAIASNRLDFGEVGNSPVISAQAAGIGF---TEIANTSYARKGTG 120
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+ V +K + K + G+ + ++ K +I+
Sbjct: 121 ILVQKDSKIASVKDLKG----------KKIAVAKGSSAFNLLYRALDKEGIDAKDVNVIQ 170
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+ + + + W+P LN + + + + + R+
Sbjct: 171 LQPD----EAQPAFESGSVDAWAIWDPFISLHTLNKGAKVIADGETLNVSSPEFLITRTK 226
Query: 234 YLDKCPNISRLL-----KNIKFSVALENEMM-KLILNNKQDRQFV 272
+ + P + K + A +E + K D + V
Sbjct: 227 FAKEHPELVEKFLKVYEKARVWQDANLDEAIKVYTSVKKIDAEIV 271
>gi|238754778|ref|ZP_04616129.1| D-methionine-binding lipoprotein [Yersinia ruckeri ATCC 29473]
gi|238706938|gb|EEP99304.1| D-methionine-binding lipoprotein [Yersinia ruckeri ATCC 29473]
Length = 271
Score = 44.4 bits (103), Expect = 0.018, Method: Composition-based stats.
Identities = 33/277 (11%), Positives = 73/277 (26%), Gaps = 14/277 (5%)
Query: 3 KILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
K +A L + + P ++ T+ + + +E G +
Sbjct: 6 KSIAAVGALIGTLVLTGCGQEEKDPNHIKVGVIVGTEQQV-AEVAQKVAKEKYGLNVELV 64
Query: 61 LLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
V +L ID+ P L++ I + + A Y +
Sbjct: 65 TFNDYVLPNEALSKGDIDLNAFQHKPYLDQQIKDRGYKLVSVGNSFVYPIAGYSKKI-KS 123
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
L S + LG + ++ + + + G
Sbjct: 124 LDELQPGSQVALPNDPTNLGRSLLLLQQQGLITLKDGVGLLPTVLDVTGNPKNLKLVELE 183
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
Q+ R + A+ + + S + + G + G V +V +
Sbjct: 184 APQLPRSLDDQQIALAVINTTYA--SQIGLTPAKDGLFVEGKDSPYVNLIVAREDNKDAE 241
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
N+ + ++ + NE N +
Sbjct: 242 NVKKFVQAYQ--SDEVNEAANKAFNGG-----AVKGW 271
>gi|229156501|ref|ZP_04284592.1| aliphatic sulfonates-binding protein [Bacillus cereus ATCC 4342]
gi|228627004|gb|EEK83740.1| aliphatic sulfonates-binding protein [Bacillus cereus ATCC 4342]
Length = 328
Score = 44.4 bits (103), Expect = 0.018, Method: Composition-based stats.
Identities = 31/286 (10%), Positives = 76/286 (26%), Gaps = 31/286 (10%)
Query: 3 KILAVCLFLTTFSISY----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL---GY 55
K+L+ + ++ F A V+ EE G
Sbjct: 6 KVLSFAVAISLFLFGCEKSTASSKKEDITVQIGIQQGLSPLLLAQ-KKGWFEEEFKKEGV 64
Query: 56 KTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
K P F ++ + +D P + A ++ + +
Sbjct: 65 KVKWTEFQSGPPYFEAIASNRLDFGEVGNSPVISAQAAGIEF---TEIANTSYARKGTGI 121
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
V +K EL K + G+ + ++ + K +I+
Sbjct: 122 LVQKDSKITSVK----------ELKGKKIAVAKGSSAFNLLYRALDKEGINAKDVNVIQL 171
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDY 234
+ + + + W+P +N + + + + R +
Sbjct: 172 QPD----EAQPAFESGSVDAWAIWDPFISLHTVNKGAKVITDGEQLNVSSPEFLIARKKF 227
Query: 235 LDKCPNISRLL-----KNIKFSVALENEMMKLILNNKQDRQFVGRT 275
+ P + K + +E +K+ + K+ + +
Sbjct: 228 AKEHPELVEKFLKVYEKARVWQDENLDEAIKIYTSAKKIDADIVKE 273
>gi|28872431|ref|NP_795050.1| taurine ABC transporter periplasmic taurine-binding protein
[Pseudomonas syringae pv. tomato str. DC3000]
gi|28855686|gb|AAO58745.1| taurine ABC transporter, periplasmic taurine-binding protein
[Pseudomonas syringae pv. tomato str. DC3000]
Length = 325
Score = 44.4 bits (103), Expect = 0.019, Method: Composition-based stats.
Identities = 35/297 (11%), Positives = 77/297 (25%), Gaps = 34/297 (11%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
K+ LT S++ A A D + + + Y+ K
Sbjct: 1 MKLHFSLRLLTALSLTGATFLAQAADFTVAYQTTVDP-------AKVAQADNAYE---KA 50
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ +R N I ++ + L +++A
Sbjct: 51 TDSKIAWRKFDNGADVITAIASSDVQIGYLGSSPFTAAATRK---LPVETFLIATQIGAA 107
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
+ ++L K + + G+ +L + + ++ +
Sbjct: 108 EALVARNGSGINSPQDLIGKKIAVPFVSTGHYSLLAALKHWNIDPAKVTILNLAPP---- 163
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I + W+P + L E++ G + +VR D+ K P
Sbjct: 164 AIAAAWKRGDIDATYVWDPALGVAKETGKVLITSGELAKVGAPTFDAWIVRKDFASKHPE 223
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW--LIGVTTFD 295
+ + + +QD + +P + L G D
Sbjct: 224 VVKAFAKVTLD---------AYAQYRQDPAA----WI-ANPANVDKLTRLSGAKASD 266
>gi|70733778|ref|YP_257418.1| taurine ABC transporter periplasmic binding protein [Pseudomonas
fluorescens Pf-5]
gi|68348077|gb|AAY95683.1| taurine ABC transporter, periplasmic binding protein [Pseudomonas
fluorescens Pf-5]
Length = 325
Score = 44.4 bits (103), Expect = 0.019, Method: Composition-based stats.
Identities = 19/117 (16%), Positives = 34/117 (29%), Gaps = 17/117 (14%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I + W+P + N L E++ FG + +VR D+ +K P
Sbjct: 164 AIIAAWKRGDIDATYVWDPALGVAKENGKVLITSGELAKFGAPTFDAWIVRKDFAEKHPE 223
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW--LIGVTTFD 295
I + ++D + L + + L G D
Sbjct: 224 IVTAFAKVTLD---------AYAQYRKDP----QAWL-ANQGNVDKLVKLSGAKASD 266
>gi|296125206|ref|YP_003632458.1| extracellular solute-binding protein family 3 [Brachyspira
murdochii DSM 12563]
gi|296017022|gb|ADG70259.1| extracellular solute-binding protein family 3 [Brachyspira
murdochii DSM 12563]
Length = 347
Score = 44.4 bits (103), Expect = 0.019, Method: Composition-based stats.
Identities = 26/261 (9%), Positives = 64/261 (24%), Gaps = 20/261 (7%)
Query: 1 MYKILAVCLFLTTFSIS----------YARDADSCTPVRFADTGWTDIAATTAMTSVILE 50
M K L + + L S + ++ A + + M + L+
Sbjct: 1 MKKTLKLIITLLIAVTSLFILASCANKGGASSGDAKTLKVAVMPFLNSVPIEYMINNKLD 60
Query: 51 EILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGA 110
+ G+ G+ S + + + +G
Sbjct: 61 QKYGFTIETVYFPSGGPMNEALGAGL---WEVGTLSAASVYSLANYNAHVVADIGHSEGG 117
Query: 111 KYMLAVND---VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
+L D + K + ++ L K + G + ++ +
Sbjct: 118 IEVLVNPDSDILTVKGVNKDFPEVYGDAATLKGKTIAVPTGTISHLNVIHWLRAINVDPN 177
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
++ F Q + + P +++ + + +
Sbjct: 178 TVNIVH----MEFPQAYQALKAKKIDAAALNPPTSFSAEADGMKIVSSLTTLNIPQFDSI 233
Query: 228 TVVRSDYLDKCPNISRLLKNI 248
V Y +K I +K
Sbjct: 234 IVSDEAYNNKKDTIVLYIKAF 254
>gi|229110369|ref|ZP_04239941.1| aliphatic sulfonates-binding protein [Bacillus cereus Rock1-15]
gi|228673109|gb|EEL28381.1| aliphatic sulfonates-binding protein [Bacillus cereus Rock1-15]
Length = 328
Score = 44.4 bits (103), Expect = 0.019, Method: Composition-based stats.
Identities = 34/285 (11%), Positives = 78/285 (27%), Gaps = 32/285 (11%)
Query: 2 YKILAVCLFLTTFSISY----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL---G 54
+K+L+ L ++ + A ++ EE G
Sbjct: 5 FKVLSFALAISVCLLGCEKSTASSKKEDVTIQIGIQQGLSPLLLAK-KKGWFEEEFKKEG 63
Query: 55 YKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
K P F ++ + +D P + A ++ +
Sbjct: 64 VKVKWTEFQSGPPYFEAIASNRLDFGEVGNSPVISAQAAGIGF---TEIANTSYARKGTG 120
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+ V +K EL K + G+ + ++ K +I+
Sbjct: 121 ILVQKDSKIASVK----------ELKGKKIAVAKGSSVFNLLYRALDKEGIDAKEVNVIQ 170
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+ + + + W+P LN + + + + + R+
Sbjct: 171 LQPD----EAQPAFESGSVDAWAIWDPFISLHTLNKGAKVIADGETLNVSSPEFLITRTK 226
Query: 234 YLDKCPN-ISRLL----KNIKFSVALENEMM-KLILNNKQDRQFV 272
+ + P + + L K + A +E + K D + V
Sbjct: 227 FAKEHPELVEKFLKVYEKARVWQDANLDEAIKVYTSVKKIDAEIV 271
>gi|228953252|ref|ZP_04115306.1| aliphatic sulfonates-binding protein [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228806479|gb|EEM53044.1| aliphatic sulfonates-binding protein [Bacillus thuringiensis
serovar kurstaki str. T03a001]
Length = 328
Score = 44.4 bits (103), Expect = 0.020, Method: Composition-based stats.
Identities = 28/253 (11%), Positives = 67/253 (26%), Gaps = 27/253 (10%)
Query: 3 KILAVCLFLTTFSISY----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL---GY 55
KIL+ L ++ + A ++ EE G
Sbjct: 6 KILSFALAISVCLLGCEKSTASSKKEDVTIQIGIQQGLSPLLLAK-KKGWFEEEFKKEGV 64
Query: 56 KTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
K P F ++ + +D P + A ++ + +
Sbjct: 65 KVKWTEFQSGPPYFEAIASNRLDFGEVGNSPVISAQAAGIGF---TEIANTSYARKGTGI 121
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
V +K + K + G+ + ++ K +I+
Sbjct: 122 LVQKDSKIASVKDLKG----------KKIAVAKGSSAFNLLYRALDKEGIDAKDVNVIQL 171
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDY 234
+ + + + W+P LN + + + + + R+ +
Sbjct: 172 QPD----EAQPAFESGSVDAWAIWDPFISLHTLNKGAKVIADGETLNVSSPEFLITRTKF 227
Query: 235 LDKCPN-ISRLLK 246
+ P + + LK
Sbjct: 228 AKEHPELVEKFLK 240
>gi|161504635|ref|YP_001571747.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. arizonae serovar 62:z4,z23:-- str.
RSK2980]
gi|160865982|gb|ABX22605.1| hypothetical protein SARI_02756 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 271
Score = 44.4 bits (103), Expect = 0.020, Method: Composition-based stats.
Identities = 29/279 (10%), Positives = 68/279 (24%), Gaps = 16/279 (5%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K A L D P ++ + + + +E G +
Sbjct: 5 FKTFAAVGALIGSLALAGCGQDEKDPNHIKVGVIVGAEQQV-AEVAQKVAKEKYGLDVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V +L ID P L++ I + A Y +
Sbjct: 64 VAFNDYVLPNEALSKGDIDANAFQHKPYLDQQIKDRGYKLVSVGKTFVYPIAGYSKKIKS 123
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPG-NEGNQRILDMINNNKFSLKGFRLIEASEL 177
+ + + + G + + + + + L
Sbjct: 124 LDELQDGSQVAVPNDPTNLGRSLLLLQKVGLIKLKDGVGLLPTSLDIADNPKNLKIVELE 183
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDK 237
A Q+ R + A+ + + S + + G + V +V +
Sbjct: 184 AP--QLPRSLDDAQIALAVINTTYA--SQIGLTPAKDGIFVEDKDSPYVNLIVTREDNKD 239
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
N+ + ++ + E + N +
Sbjct: 240 AENVKKFVQAYQ--SDEVYEAANKVFNGG-----AVKGW 271
>gi|77461639|ref|YP_351146.1| taurine ABC transporter, periplasmic binding protein [Pseudomonas
fluorescens Pf0-1]
gi|77385642|gb|ABA77155.1| taurine transport system substrate-binding protein [Pseudomonas
fluorescens Pf0-1]
Length = 356
Score = 44.4 bits (103), Expect = 0.020, Method: Composition-based stats.
Identities = 13/133 (9%), Positives = 35/133 (26%), Gaps = 5/133 (3%)
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+ ++L K + + +L + + +++
Sbjct: 135 AAEALVVRNGSGINKPEDLIGKTIATPFVSTSHYSLLGALKHWALDTSKVKVVNLQP--- 191
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEAS-VYTVVRSDYLDKC 238
++I + W P L ++ +G + V R D+ +K
Sbjct: 192 -AEIAAAWKRGDIDGAFVWSPALGEIRKTGKTLTDAAQVGQWGAPTFEVWVARKDFAEKH 250
Query: 239 PNISRLLKNIKFS 251
P + +
Sbjct: 251 PEVVAKFAKVTLD 263
>gi|331017061|gb|EGH97117.1| taurine ABC transporter, periplasmic binding protein [Pseudomonas
syringae pv. lachrymans str. M302278PT]
Length = 325
Score = 44.4 bits (103), Expect = 0.021, Method: Composition-based stats.
Identities = 36/297 (12%), Positives = 78/297 (26%), Gaps = 34/297 (11%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
K+ LT S++ A A D + + + Y+ K
Sbjct: 1 MKLHFSLRLLTALSLTGATFLAQAADFTVAYQTTVDP-------AKVAQADNAYE---KA 50
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ +R L N I ++ + L +++A
Sbjct: 51 TDSKIAWRKLDNGADVITAIASSDVQIGYLGSSPFTAAATRK---LPVETFLIATQIGAA 107
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
+ ++L K + + G+ +L + + ++ +
Sbjct: 108 EALVARNGSGINSPQDLIGKKIAVPFVSTGHYSLLAALKHWNIDPAKVTILNLAPP---- 163
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I + W+P + L E++ G + +VR D+ K P
Sbjct: 164 AIAAAWKRGDIDATYVWDPALGVAKETGKVLITSGELAKVGAPTFDAWIVRKDFASKHPE 223
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW--LIGVTTFD 295
+ + + +QD + +P + L G D
Sbjct: 224 VVKAFAKVTLD---------AYAQYRQDPAA----WI-ANPANVDKLTRLSGAKASD 266
>gi|229151131|ref|ZP_04279338.1| aliphatic sulfonates-binding protein [Bacillus cereus m1550]
gi|228632345|gb|EEK88967.1| aliphatic sulfonates-binding protein [Bacillus cereus m1550]
Length = 328
Score = 44.4 bits (103), Expect = 0.021, Method: Composition-based stats.
Identities = 34/285 (11%), Positives = 77/285 (27%), Gaps = 32/285 (11%)
Query: 2 YKILAVCLFLTTFSISY----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL---G 54
+KIL+ L ++ + A ++ EE G
Sbjct: 5 FKILSFALAISVCLLGCEKSTASSKKEDVTIQIGIQQGLSPLLLAK-KKGWFEEEFKKEG 63
Query: 55 YKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
K P F ++ + +D P + A ++ +
Sbjct: 64 VKVKWTEFQSGPPYFEAIASNRLDFGEVGNSPVISAQAAGIGF---TEIANTSYARKGTG 120
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+ V +K EL K + G+ + +++ K +I+
Sbjct: 121 ILVQKDSKIASVK----------ELKGKKIAVAKGSSAFNLLYRVLDKEGIDAKEVNVIQ 170
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+ + + + W+P LN + + + + + R+
Sbjct: 171 LQPD----EAQPAFESGSVDAWAIWDPFISLHTLNKGAKVIADGETLNVSSPEFLITRTK 226
Query: 234 YLDKCPNISRLL-----KNIKFSVALENEMM-KLILNNKQDRQFV 272
+ + P + K + A +E + K D + V
Sbjct: 227 FAKEHPELVEKFLEVYEKARVWQDANLDEAIKVYTSVKKIDAEIV 271
>gi|167031275|ref|YP_001666506.1| taurine ABC transporter periplasmic binding protein [Pseudomonas
putida GB-1]
gi|166857763|gb|ABY96170.1| taurine ABC transporter, periplasmic binding protein [Pseudomonas
putida GB-1]
Length = 323
Score = 44.4 bits (103), Expect = 0.021, Method: Composition-based stats.
Identities = 19/117 (16%), Positives = 38/117 (32%), Gaps = 17/117 (14%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I + W+P + N L E++ G + +VR D+ +K P+
Sbjct: 162 AIIAAWKRGDIDATYVWDPALGVAKENGKVLITSGELAQKGAPTFDAWIVRKDFAEKHPD 221
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTML--RTHPDLLKNWLIGVTTFD 295
+ + + + ++D + L + + D L L G D
Sbjct: 222 VVKAFAKVTLD---------AYADYRKDP----KAWLADKANVDKLVK-LSGAKASD 264
>gi|268590313|ref|ZP_06124534.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Providencia rettgeri DSM 1131]
gi|291314222|gb|EFE54675.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Providencia rettgeri DSM 1131]
Length = 258
Score = 44.4 bits (103), Expect = 0.021, Method: Composition-based stats.
Identities = 29/259 (11%), Positives = 69/259 (26%), Gaps = 15/259 (5%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K L L T +++ A ++ + + + + T A+ + E T ++
Sbjct: 1 MKKGLVSLLAGATLTLTMASNSFAADKITV----FAAASLTNALNE--ISEQYKKDTKVE 54
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA-VNDV 119
++A + +L + + S ++ Y + + + L +
Sbjct: 55 VVASYASSSTLARQIEQGAPANLFISADQQWMDYAIDKKLMVEDTRYTLLGNELVLIAPK 114
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+ +KK L + + I + + +
Sbjct: 115 DAKIDKVEINKQTDWKKLLDGGRLAVGDPDHVPVGIYAKEALSNLGAWETVDPLLARTNN 174
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV------VRSD 233
+ + + + S + E + V D
Sbjct: 175 VRSGMALVERQEAPLGIVYGSDAVASQKVKVVGVFPADTHKPVEYPMAIVKDQDNQATRD 234
Query: 234 YLD--KCPNISRLLKNIKF 250
Y + K P S + K F
Sbjct: 235 YYEYLKTPAASEVFKRYGF 253
>gi|322392588|ref|ZP_08066048.1| Fe3+ ABC superfamily ATP binding cassette transporter, binding
protein [Streptococcus peroris ATCC 700780]
gi|321144580|gb|EFX39981.1| Fe3+ ABC superfamily ATP binding cassette transporter, binding
protein [Streptococcus peroris ATCC 700780]
Length = 346
Score = 44.4 bits (103), Expect = 0.021, Method: Composition-based stats.
Identities = 42/283 (14%), Positives = 85/283 (30%), Gaps = 41/283 (14%)
Query: 1 MYKILAVC----LFLTTFSISYARDA------DSCTPVRFADTGWTDIAATTAMTSVILE 50
M KIL +FLT S +A DS + + + + E
Sbjct: 1 MKKILFFLSCGWIFLTLSGCSSTTEAETSAEKDSDNTLVVYSPN-PEDLIEEIIPAF--E 57
Query: 51 EILGYKTNIKLLAVPVTFRSLKN-----------KGIDIFMGYWYPSLEKFIAPYLEEGS 99
E G K ++ + F+ ++ G E +I+ ++
Sbjct: 58 EKYGIKVDLVQASTGELFKKAESEKEAPVADVIFGGSYALFSSNENLFEPYISQENDQII 117
Query: 100 IKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNE--------- 150
+ E Y L V+ + + I Y L K+ G +
Sbjct: 118 PEYQNETGFYTPYTLDVSVIIANSSLTKGIKIEGYNDLLNPKLKGKIATADPSNASSAFA 177
Query: 151 ------GNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWE--PHP 202
+Q + + F L++ +S S + + + AV L++E
Sbjct: 178 QLTNMLVDQGGYENEQAWTYVKNLFTLVDGKIASSSSNVYKAVADGEMAVGLTYEDPALK 237
Query: 203 INSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
+ +D + +E + F + V + +++ L
Sbjct: 238 LLNDGADVKVIYPKEGTVFLPGNAAIVKNAKHMENAKKFIDFL 280
>gi|313109373|ref|ZP_07795336.1| putative periplasmic taurine-binding protein precursor [Pseudomonas
aeruginosa 39016]
gi|310881838|gb|EFQ40432.1| putative periplasmic taurine-binding protein precursor [Pseudomonas
aeruginosa 39016]
Length = 337
Score = 44.4 bits (103), Expect = 0.021, Method: Composition-based stats.
Identities = 13/72 (18%), Positives = 22/72 (30%), Gaps = 1/72 (1%)
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEAS-VYTVVRSDYLDKCP 239
++I R W P + L E+ +G + V R D+ +K P
Sbjct: 164 AEIAAAWRRGDIDGAFVWSPALGEIKKSGKVLTDAAEVGQWGAPTFEVWVARKDFAEKHP 223
Query: 240 NISRLLKNIKFS 251
I +
Sbjct: 224 EIVARFARVSLD 235
>gi|206971819|ref|ZP_03232768.1| putative sulfonate ABC transporter, sulfonate-binding protein
[Bacillus cereus AH1134]
gi|206733204|gb|EDZ50377.1| putative sulfonate ABC transporter, sulfonate-binding protein
[Bacillus cereus AH1134]
Length = 328
Score = 44.4 bits (103), Expect = 0.022, Method: Composition-based stats.
Identities = 30/253 (11%), Positives = 68/253 (26%), Gaps = 27/253 (10%)
Query: 3 KILAVCLFLTTFSISY----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL---GY 55
KIL+ L ++ + A ++ EE G
Sbjct: 6 KILSFALAISVCLLGCEKSTASSKKEDVTIQIGIQQGLSPLLLAK-KKGWFEEEFKKEGV 64
Query: 56 KTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
K P F ++ + +D P + A ++ + +
Sbjct: 65 KVKWTEFQSGPPYFEAIASNRLDFGEVGNSPVISAQAAGIGF---TEIANTSYARKGTGI 121
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
V +K EL K + G+ + ++ K +I+
Sbjct: 122 LVQKDSKIASVK----------ELKGKKIAVAKGSSAFNLLYRALDKEGIDAKDVNVIQL 171
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDY 234
+ + + + W+P LN + + + + + R+ +
Sbjct: 172 QPD----EAQPAFESGSVDAWAIWDPFISLHTLNKGAKVIADGETLNVSSPEFLITRTKF 227
Query: 235 LDKCPN-ISRLLK 246
+ P + + LK
Sbjct: 228 AKEHPELVEKFLK 240
>gi|21623832|dbj|BAC00968.1| ABC-type transporter periplasmic sulfonate-binding component
[Pseudomonas putida]
Length = 323
Score = 44.4 bits (103), Expect = 0.022, Method: Composition-based stats.
Identities = 34/289 (11%), Positives = 78/289 (26%), Gaps = 36/289 (12%)
Query: 10 FLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFR 69
+++ A + A D A + Y+ K + +R
Sbjct: 9 LFAALTLASASWLAQAADLTVAYQTTVDPAKVAQVDG-------DYE---KASKASIDWR 58
Query: 70 SLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQ 129
N I ++ + + A +
Sbjct: 59 KFDNGADVITAVASGDVQIGYLGSSPLAAAATRKLPV-----ETFLIATQIGAGEALVAR 113
Query: 130 DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRN 189
D K ++L K + + G+ +L + + +++ + I +
Sbjct: 114 DSIKTPQDLVGKKVAVPFVSTGHYSLLAALKSWNIDPAKVQILNLAPP----AIIAAWKR 169
Query: 190 NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKNI 248
W+P + N L E++ G + +VR D+ K P++ + +
Sbjct: 170 GDIDATYVWDPALGVAKENGKVLITSGELAKKGAPTFDAWIVRKDFAAKHPDVVKAFAKV 229
Query: 249 KFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW--LIGVTTFD 295
+ +++ + L +PD + L G D
Sbjct: 230 TLD---------AYADYRKNP----QAWL-ANPDNVSKLAKLSGAKPAD 264
>gi|229046619|ref|ZP_04192269.1| aliphatic sulfonates-binding protein [Bacillus cereus AH676]
gi|228724706|gb|EEL76013.1| aliphatic sulfonates-binding protein [Bacillus cereus AH676]
Length = 328
Score = 44.4 bits (103), Expect = 0.022, Method: Composition-based stats.
Identities = 33/285 (11%), Positives = 76/285 (26%), Gaps = 32/285 (11%)
Query: 2 YKILAVCLFLTTFSISY----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL---G 54
+K+L+ L ++ + A ++ EE G
Sbjct: 5 FKVLSFALAISVCLLGCEKSTASSKKEDVTIQIGIQQGLSPLLLAK-KKGWFEEEFKKEG 63
Query: 55 YKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
K P F ++ + +D P + A ++ +
Sbjct: 64 VKVKWTEFQSGPPYFEAIASNRLDFGEVGNSPVISAQAAGIGF---TEIANTSYARKGTG 120
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+ V +K EL K + G+ + ++ K +I+
Sbjct: 121 ILVQKDSKIASVK----------ELKGKKIAVAKGSSAFNLLYRALDKEGIDAKEVNVIQ 170
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+ + + + W+P LN + + + + + R+
Sbjct: 171 LQPD----EAQPAFESGSVDAWAIWDPFISLHTLNKGAKVIADGETLNVSSPEFLITRTK 226
Query: 234 YLDKCPNISRLL-----KNIKFSVALENEMM-KLILNNKQDRQFV 272
+ + P + K + A +E + K D + V
Sbjct: 227 FAKEHPELVEKFLKVYEKARVWQDANLDEAIKVYTSVKKIDAEIV 271
>gi|218549969|ref|YP_002383760.1| taurine transporter substrate binding subunit [Escherichia
fergusonii ATCC 35469]
gi|218357510|emb|CAQ90149.1| taurine transporter subunit ; periplasmic-binding component of ABC
superfamily [Escherichia fergusonii ATCC 35469]
Length = 320
Score = 44.4 bits (103), Expect = 0.022, Method: Composition-based stats.
Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 1/74 (1%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I + W P + + L E++ +G ++ VVR D+ K P
Sbjct: 160 AIIAAWQRGDIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGSPTLDVWVVRKDFAQKYPE 219
Query: 241 ISRLLKNIKFSVAL 254
+ + +
Sbjct: 220 VVKAFAKSAINAQQ 233
>gi|229097434|ref|ZP_04228396.1| aliphatic sulfonates-binding protein [Bacillus cereus Rock3-29]
gi|229116430|ref|ZP_04245820.1| aliphatic sulfonates-binding protein [Bacillus cereus Rock1-3]
gi|228667262|gb|EEL22714.1| aliphatic sulfonates-binding protein [Bacillus cereus Rock1-3]
gi|228686245|gb|EEL40161.1| aliphatic sulfonates-binding protein [Bacillus cereus Rock3-29]
Length = 328
Score = 44.4 bits (103), Expect = 0.022, Method: Composition-based stats.
Identities = 35/289 (12%), Positives = 74/289 (25%), Gaps = 35/289 (12%)
Query: 1 MYKILAVCLFLTTFSI-------SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL 53
MYK V F S+ S A ++ EE
Sbjct: 1 MYKKFIVLSFALAISVFLLGCEKSTASSKKEDVTIQIGIQQGLSPLLLAK-KKGWFEEEF 59
Query: 54 ---GYKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQG 109
G K P F ++ + +D P + A ++ +
Sbjct: 60 KKEGVKVKWTEFQSGPPYFEAIASNRLDFGEVGNSPVISAQAAGIGF---TEIANTSYAR 116
Query: 110 AKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
+ V IK + K + G+ + ++ K
Sbjct: 117 KGTGILVQKDSKIASIKDLKG----------KKIAVAKGSSAFNLLYRALDKEGIDAKDV 166
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV 229
+I+ + + + + W+P +N + + + + +
Sbjct: 167 NVIQLQPD----EAQPAFESGSVDAWAIWDPFISLHTVNKGAKVIADGETLDVSSPEFLI 222
Query: 230 VRSDYLDKCPNISRLL-----KNIKFSVALENEMM-KLILNNKQDRQFV 272
R+ + + P + K + A +E + K D + V
Sbjct: 223 TRTKFAKEHPELVEKFLKVYEKARVWQDANLDEAIKVYTSVKKIDAEIV 271
>gi|82775589|ref|YP_401936.1| DL-methionine transporter substrate-binding subunit [Shigella
dysenteriae Sd197]
gi|309787123|ref|ZP_07681735.1| D-methionine-binding lipoprotein metQ [Shigella dysenteriae 1617]
gi|81239737|gb|ABB60447.1| putative lipoprotein [Shigella dysenteriae Sd197]
gi|308924701|gb|EFP70196.1| D-methionine-binding lipoprotein metQ [Shigella dysenteriae 1617]
Length = 271
Score = 44.4 bits (103), Expect = 0.023, Method: Composition-based stats.
Identities = 23/283 (8%), Positives = 68/283 (24%), Gaps = 24/283 (8%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K A L D P ++ + + + ++ G +
Sbjct: 5 FKTFAAVGALIGSLALVGCGQDEKDPNHIKVGVIVGAEQQV-AEVAQKVAKDKYGLDVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V +L I+ P L++ + + A Y +
Sbjct: 64 VTFNDYVLPNEALSKGDIEANAFQHKPYLDQQLKDRGYKLVAVGNTFVYPIAGYSKKIKS 123
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ + + + G ++ + + ++E +
Sbjct: 124 LDELQDGSQVAVPNDPTNLGRSLLLLQKVG------LIKLKDGVGLLPTVLDVVENPKNL 177
Query: 179 SFSQIR-----RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
++ R + A+ + + S + + G + V +V +
Sbjct: 178 KIVELEAPQLPRSLDDAQIALAVINTTYA--SQIGLTPAKDGIFVEDKDSPYVNLIVTRE 235
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
+ + ++ + E + N +
Sbjct: 236 DNKDAEKVKKFVQAYQ--SDEVYEAANKVFNGG-----AVKGW 271
>gi|255102101|ref|ZP_05331078.1| ABC transporter, substrate-binding protein [Clostridium difficile
QCD-63q42]
Length = 319
Score = 44.4 bits (103), Expect = 0.023, Method: Composition-based stats.
Identities = 42/276 (15%), Positives = 86/276 (31%), Gaps = 16/276 (5%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+ K+L LT + S A A + ++ T + + + S+I ++ + K
Sbjct: 3 LKKLLIGITILTLATASLAGCAKKNNGEKLSEINLTYVKSPLNVPSIIQKQDDLFGKEFK 62
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ V F + E L S + A N K + +
Sbjct: 63 KDNIKVNFHEITTGPEQTQALAAG---EIDFLHALGGTSALIAASNGVELKILNTYSRSP 119
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
I + + K +L K G +Q ++ ++ S+ +
Sbjct: 120 KGFMILTNNNSIKSAADLVGKKVAGPKGTILHQVLISALDKEGLSMDDVEFVN----MGI 175
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ + L P + + + L E G + T V +D+ +K P
Sbjct: 176 PEASAALSDGSVDAALIAGPAALKAMKSGSKLIANGEGLVDGI--IVTAVSTDFAEKHPE 233
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDR-QFVGRT 275
I + E E ++ + NN + + V +
Sbjct: 234 IVERFMKV------EKETLEYVNNNFDEAMEKVAKE 263
>gi|293408290|ref|ZP_06652130.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli B354]
gi|291472541|gb|EFF15023.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli B354]
Length = 271
Score = 44.4 bits (103), Expect = 0.023, Method: Composition-based stats.
Identities = 26/283 (9%), Positives = 70/283 (24%), Gaps = 24/283 (8%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K A L D P ++ + + + ++ G +
Sbjct: 5 FKTFAAVGALIGSLALVGCGQDEKDPNHIKVGVIVGAEQQV-AEVAQKVAKDKYGLDVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V +L ID P L++ + + A Y +
Sbjct: 64 VTFNDYVLPNEALSKGDIDANAFQHKPYLDQQLKDRGYKLVAVGNTFVYPIAGYSKKIKS 123
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ L + + + G ++ + + ++E +
Sbjct: 124 LDELLDGSQVAVPNDPTNLGRSLLLLQKVG------LIKLKDGVGLLPTVLDVVENPKNL 177
Query: 179 SFSQIR-----RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
++ R + A+ + + S + + G + V +V +
Sbjct: 178 KIVELEAPQLPRSLDDAQIALAVINTTYA--SQIGLTPAKDGIFVEDKDSPYVNLIVTRE 235
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
N+ + ++ + E + N +
Sbjct: 236 DNKDAENVKKFVQAYQ--SDEVYEAANKVFNGG-----AVKGW 271
>gi|228959138|ref|ZP_04120837.1| aliphatic sulfonates-binding protein [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228800527|gb|EEM47445.1| aliphatic sulfonates-binding protein [Bacillus thuringiensis
serovar pakistani str. T13001]
Length = 328
Score = 44.4 bits (103), Expect = 0.023, Method: Composition-based stats.
Identities = 34/285 (11%), Positives = 77/285 (27%), Gaps = 32/285 (11%)
Query: 2 YKILAVCLFLTTFSISY----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL---G 54
+KIL+ L ++ + A ++ EE G
Sbjct: 5 FKILSFALAISVCLLGCEKSTASSKKEDVTIQIGIQQGLSPLLLAK-KKGWFEEEFKKEG 63
Query: 55 YKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
K P F ++ + +D P + A ++ +
Sbjct: 64 VKVKWTEFQSGPPYFEAIASNRLDFGEVGNSPVISAQAAGIGF---TEIANTSYARKGTG 120
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+ V +K EL K + G+ + ++ K +I+
Sbjct: 121 ILVQKDSKIASVK----------ELKGKKIAVAKGSSAFNLLYRALDKEGIDAKEVNVIQ 170
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+ + + + W+P LN + + + + + R+
Sbjct: 171 LQPD----EAQPAFESGSVDAWAIWDPFISLHTLNKGAKVIADGETLNVSSPEFLITRTK 226
Query: 234 YLDKCPNISRLL-----KNIKFSVALENEMM-KLILNNKQDRQFV 272
++ + P + K + A +E + K D + V
Sbjct: 227 FVKEHPELVEKFLKVYEKARVWQDANLDEAIKVYTSVKKIDAEIV 271
>gi|324114591|gb|EGC08559.1| taurine ABC transporter [Escherichia fergusonii B253]
gi|325498344|gb|EGC96203.1| taurine transporter substrate binding subunit [Escherichia
fergusonii ECD227]
Length = 320
Score = 44.1 bits (102), Expect = 0.024, Method: Composition-based stats.
Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 1/74 (1%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I + W P + + L E++ +G ++ VVR D+ K P
Sbjct: 160 AIIAAWQRGDIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGSPTLDVWVVRKDFAQKYPE 219
Query: 241 ISRLLKNIKFSVAL 254
+ + +
Sbjct: 220 VVKAFAKSAINAQQ 233
>gi|330967520|gb|EGH67780.1| taurine ABC transporter, periplasmic binding protein [Pseudomonas
syringae pv. actinidiae str. M302091]
Length = 325
Score = 44.1 bits (102), Expect = 0.024, Method: Composition-based stats.
Identities = 33/297 (11%), Positives = 77/297 (25%), Gaps = 34/297 (11%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
K+ LT S++ A A D + + + Y+ K
Sbjct: 1 MKLHFSLRLLTALSLTGATFLAQAADFTVAYQTTVDP-------AKVAQADNAYE---KA 50
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ +R N I ++ + L +++A
Sbjct: 51 TDSKIAWRKFDNGADVITAIASGDVQIGYLGSSPFTAAATRK---LPVETFLIATQIGAA 107
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
+ ++L K + + G+ +L + + ++ +
Sbjct: 108 EALVARNGSGINAPQDLIGKKIAVPFVSTGHYSLLAALKHWNIDPTRVTILNLAPP---- 163
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I + W+P + L E++ G + +VR ++ + P
Sbjct: 164 AIAAAWKRGDIDATYVWDPALGVAKETGKVLITSGELAKVGAPTFDAWIVRKNFASEHPE 223
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW--LIGVTTFD 295
+ + + +QD + +P + L G D
Sbjct: 224 VVKAFAKVTLD---------AYAQYRQDPAA----WI-ANPANVDKLTRLSGAKASD 266
>gi|126700610|ref|YP_001089507.1| ABC transporter substrate-binding protein [Clostridium difficile
630]
gi|255307970|ref|ZP_05352141.1| ABC transporter, substrate-binding protein [Clostridium difficile
ATCC 43255]
gi|115252047|emb|CAJ69883.1| ABC-type transport system, sulfonate-family extracellular
solute-binding protein [Clostridium difficile]
Length = 319
Score = 44.1 bits (102), Expect = 0.024, Method: Composition-based stats.
Identities = 42/276 (15%), Positives = 86/276 (31%), Gaps = 16/276 (5%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+ K+L LT + S A A + ++ T + + + S+I ++ + K
Sbjct: 3 LKKLLIGITILTLATASLAGCAKKNNGEKLSEINLTYVKSPLNVPSIIQKQDDLFGKEFK 62
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ V F + E L S + A N K + +
Sbjct: 63 KDNIKVNFHEITTGPEQTQALAAG---EIDFLHALGGTSALIAASNGVELKILNTYSRSP 119
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
I + + K +L K G +Q ++ ++ S+ +
Sbjct: 120 KGFMILTNNNSIKSAADLVGKKVAGPKGTILHQVLISALDKEGLSMDDVEFVN----MGI 175
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ + L P + + + L E G + T V +D+ +K P
Sbjct: 176 PEASAALSDGSVDAALIAGPAALKAMKSGSKLVANGEGLVDGI--IVTAVSTDFAEKHPE 233
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDR-QFVGRT 275
I + E E ++ + NN + + V +
Sbjct: 234 IVERFMKV------EKETLEYVNNNFDEAMEKVAKE 263
>gi|255656915|ref|ZP_05402324.1| ABC transporter, substrate-binding protein [Clostridium difficile
QCD-23m63]
gi|296452245|ref|ZP_06893951.1| aliphatic sulfonates family ABC superfamily ATP binding cassette
transporter [Clostridium difficile NAP08]
gi|296877597|ref|ZP_06901627.1| ABC superfamily ATP binding cassette transporter, substrate-binding
protein [Clostridium difficile NAP07]
gi|296258902|gb|EFH05791.1| aliphatic sulfonates family ABC superfamily ATP binding cassette
transporter [Clostridium difficile NAP08]
gi|296431358|gb|EFH17175.1| ABC superfamily ATP binding cassette transporter, substrate-binding
protein [Clostridium difficile NAP07]
Length = 319
Score = 44.1 bits (102), Expect = 0.024, Method: Composition-based stats.
Identities = 42/276 (15%), Positives = 86/276 (31%), Gaps = 16/276 (5%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+ K+L LT + S A A + ++ T + + + S+I ++ + K
Sbjct: 3 LKKLLIGITILTLATASLAGCAKKNNGEKLSEINLTYVKSPLNVPSIIQKQDDLFGKEFK 62
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ V F + E L S + A N K + +
Sbjct: 63 KDNIKVNFHEITTGPEQTQALAAG---EIDFLHALGGTSALIAASNGVELKILNTYSRSP 119
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
I + + K +L K G +Q ++ ++ S+ +
Sbjct: 120 KGFMILTNNNSIKSAADLVGKKVAGPKGTILHQVLISALDKEGLSMDDVEFVN----MGI 175
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ + L P + + + L E G + T V +D+ +K P
Sbjct: 176 PEASAALSDGSIDAALIAGPAALKAMKSGSKLVANGEGLVDGI--IVTAVSTDFAEKHPE 233
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDR-QFVGRT 275
I + E E ++ + NN + + V +
Sbjct: 234 IVERFMKV------EKETLEYVNNNFDEAMEKVAKE 263
>gi|307711022|ref|ZP_07647444.1| bacterial extracellular solute-binding family protein
[Streptococcus mitis SK321]
gi|307616984|gb|EFN96162.1| bacterial extracellular solute-binding family protein
[Streptococcus mitis SK321]
Length = 346
Score = 44.1 bits (102), Expect = 0.025, Method: Composition-based stats.
Identities = 37/283 (13%), Positives = 85/283 (30%), Gaps = 41/283 (14%)
Query: 1 MYKILAVC----LFLTTFSISY------ARDADSCTPVRFADTGWTDIAATTAMTSVILE 50
M K+L +FL+ S + + DS + + + + E
Sbjct: 1 MRKLLFFLSCGWIFLSLSGCSSPIEAETSTEKDSDNTLVVYSPN-PEDLIEETIPAF--E 57
Query: 51 EILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPS-----------LEKFIAPYLEEGS 99
E G K ++ + F+ + + + E +I+ ++
Sbjct: 58 EKYGIKVDLVQASTGELFKKAEAEKESPVADVIFGGSYALFSSNEKLFEPYISQENDQMI 117
Query: 100 IKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNE--------- 150
+ + Y L V+ + + I Y L K+ G +
Sbjct: 118 PEYQNKTGFYTPYTLDVSVIIANSALTKDIKIEGYNDLLNPKLKGKIATADPSNASSAFA 177
Query: 151 ------GNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWE--PHP 202
+Q + + F L++ +S S + + + AV L++E
Sbjct: 178 QLTNMLVDQGGYESEQAWTYVKNLFTLVDGKIASSSSNVYKAVADGEMAVGLTYEDPALK 237
Query: 203 INSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
+ +D + +E + F + V + +++ L
Sbjct: 238 LLNDGVDVKVIYPKEGTVFLPGNAAIVKNAKHMENAKKFIDFL 280
>gi|163852823|ref|YP_001640866.1| aliphatic sulfonate ABC transporter periplasmic ligand-binding
protein [Methylobacterium extorquens PA1]
gi|163664428|gb|ABY31795.1| aliphatic sulfonates family ABC transporter, periplsmic
ligand-binding protein [Methylobacterium extorquens PA1]
Length = 324
Score = 44.1 bits (102), Expect = 0.025, Method: Composition-based stats.
Identities = 32/277 (11%), Positives = 72/277 (25%), Gaps = 34/277 (12%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILE---EILGYKTNI 59
++ L S++ A A VR + + S LE + LGY+
Sbjct: 16 RLWLALAALIFVSLTLAAHAQE-RTVRIGYQKYGTLVLLKGRGS--LEPKLKALGYRVQW 72
Query: 60 KLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
P +L +D P A + + E + V
Sbjct: 73 SEFPSGPPLMEALNAGAVDFGSAGETP---PIFAQAASDVLAYVAHEPAAPKGEAILVPK 129
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
A + + K + G+ + ++ I +L + +
Sbjct: 130 SSAAQSVADLRG----------KKVALNKGSNVHYLLVRAIEAAGLTLADITPVYLAP-- 177
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+ R ++ W+P+ ++ + + + + + +
Sbjct: 178 --ADARAAFERGAVDAWVIWDPYFAAAEAGGNARVLADGTGLVPNHQ-FYLSSKSFAAEN 234
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRT 275
+ VA E+ +N V +
Sbjct: 235 GPALDAI------VAAVAEVDAWAKDNT---DAVAKE 262
>gi|229191018|ref|ZP_04318008.1| aliphatic sulfonates-binding protein [Bacillus cereus ATCC 10876]
gi|228592416|gb|EEK50245.1| aliphatic sulfonates-binding protein [Bacillus cereus ATCC 10876]
Length = 328
Score = 44.1 bits (102), Expect = 0.026, Method: Composition-based stats.
Identities = 30/253 (11%), Positives = 68/253 (26%), Gaps = 27/253 (10%)
Query: 3 KILAVCLFLTTFSISY----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL---GY 55
KIL+ L ++ + A ++ EE G
Sbjct: 6 KILSFVLAISVCLLGCEKSTASSKKEDVTIQIGIQQGLSPLLLAK-KKGWFEEEFKKEGV 64
Query: 56 KTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
K P F ++ + +D P + A ++ + +
Sbjct: 65 KVKWTEFQSGPPYFEAIASNRLDFGEVGNSPVISAQAAGIGF---TEIANTSYARKGTGI 121
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
V +K EL K + G+ + ++ K +I+
Sbjct: 122 LVQKDSKIASVK----------ELKGKKIAVAKGSSAFNLLYRALDKEGIDSKDVNVIQL 171
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDY 234
+ + + + W+P LN + + + + + R+ +
Sbjct: 172 QPD----EAQPAFESGSVDAWAIWDPFISLHTLNKGAKVIADGETLNVSSPEFLITRTKF 227
Query: 235 LDKCPN-ISRLLK 246
+ P + + LK
Sbjct: 228 AKEHPELVEKFLK 240
>gi|196042269|ref|ZP_03109548.1| putative sulfonate ABC transporter, sulfonate-binding protein
[Bacillus cereus NVH0597-99]
gi|229091919|ref|ZP_04223107.1| aliphatic sulfonates-binding protein [Bacillus cereus Rock3-42]
gi|196026888|gb|EDX65516.1| putative sulfonate ABC transporter, sulfonate-binding protein
[Bacillus cereus NVH0597-99]
gi|228691400|gb|EEL45160.1| aliphatic sulfonates-binding protein [Bacillus cereus Rock3-42]
Length = 328
Score = 44.1 bits (102), Expect = 0.027, Method: Composition-based stats.
Identities = 29/250 (11%), Positives = 66/250 (26%), Gaps = 26/250 (10%)
Query: 2 YKILAVCLFLTTFSISY----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL---G 54
+K+L+ L ++ F A V+ EE G
Sbjct: 5 FKVLSFTLAISLFLFGCEKSTASSKKEDVTVQIGIQQGLSPLLLAQ-KKGWFEEEFKKEG 63
Query: 55 YKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
K P F ++ + +D P + A ++ +
Sbjct: 64 VKVKWTEFQSGPPYFEAIASNRLDFGEVGNSPVISAQAAGIGF---TEIANTSYARKGTG 120
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+ V IK EL K + G+ + ++ + K +I+
Sbjct: 121 ILVQKDSKITSIK----------ELKGKKIAVAKGSSAFNLLYRALDKEGINAKDVNVIQ 170
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+ + + + W+P +N + + + + R+
Sbjct: 171 LQPD----EAQPAFESGSVDAWAIWDPFISLHTVNKGAKVITDGEILNVSSPEFLIARTK 226
Query: 234 YLDKCPNISR 243
+ + P +
Sbjct: 227 FAKEHPELVE 236
>gi|254508925|ref|ZP_05121033.1| ABC-type tungstate transport system, permease component [Vibrio
parahaemolyticus 16]
gi|219548164|gb|EED25181.1| ABC-type tungstate transport system, permease component [Vibrio
parahaemolyticus 16]
Length = 272
Score = 44.1 bits (102), Expect = 0.029, Method: Composition-based stats.
Identities = 32/276 (11%), Positives = 69/276 (25%), Gaps = 23/276 (8%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTP-VRFADTGWTDIAATTAMTSVIL---EEILGYK 56
M + + +SY+ + P VR A T + + +L E+ GYK
Sbjct: 1 MKTMTLTLATASLALVSYSASSADEQPHVRLAT---TTSTYHSGLLDYLLPEFEKDTGYK 57
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
++ + + +N +D+ M + + F+ + +
Sbjct: 58 VDVIAAGTGKSLKMGENGDVDLVMTHAPKAEANFVKK---GYGVLPRKLMYNDFVIVGPE 114
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIY--GIEPGNE-GNQRILDMINNN----KFSLKGF 169
D K + G + G + I + G
Sbjct: 115 KDPAKIAESADVAQAFKKIANMNMTFVSRGDDSGTHKKEKGIWQQSKIEPNFGGYRSVGQ 174
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV 229
+ +A+ Q + + + L ++ T+
Sbjct: 175 GMGPTLNMANEMQGYTMTDRGT-WLAYNNKLDLKILFQGDKNLFNPYQVILVNPERYPTI 233
Query: 230 VRSD---YLDK--CPNISRLLKNIKFSVALENEMMK 260
+ D P +L+ K S
Sbjct: 234 NYQGAKVFSDWLVNPKGQQLINEFKLSGKQLFVANA 269
>gi|330972977|gb|EGH73043.1| alkanesulfonate transporter substrate-binding subunit [Pseudomonas
syringae pv. aceris str. M302273PT]
Length = 311
Score = 44.1 bits (102), Expect = 0.030, Method: Composition-based stats.
Identities = 33/253 (13%), Positives = 69/253 (27%), Gaps = 24/253 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSV--ILEEILG-YKT 57
M + L + AD +R + T + +LE+ K
Sbjct: 1 MKPFTFIAAILAFSGLFGTASADEPDTLRIGYQK---GSITLVLAKENGLLEKRFPEKKI 57
Query: 58 N-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
I+ A P +L +DI P + +A
Sbjct: 58 KWIEFPAGPQMLEALNIGSLDIASTGDIPPIFAQVAGADL-------------VYIGAEP 104
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ + EL + ++ G+ + +L ++N + K + I +
Sbjct: 105 PKPQVETLLVRNESPVHSVAELKGRKVALQKGSSSHNVVLRLLNKAGLTFKDIQPIYLTP 164
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
+ R N + W+P+ + H YT R+ +
Sbjct: 165 ----ADARAAFENGSVDAWAIWDPYYSIAMSEGHSRLLANGEGLGLSGPFYTARRAFADE 220
Query: 237 KCPNISRLLKNIK 249
+ ++L +
Sbjct: 221 NAALVQQVLDELT 233
>gi|330812463|ref|YP_004356925.1| ABC transporter periplasmic protein [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|327380571|gb|AEA71921.1| putative ABC transporter, periplasmic component [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 321
Score = 44.1 bits (102), Expect = 0.030, Method: Composition-based stats.
Identities = 26/293 (8%), Positives = 66/293 (22%), Gaps = 48/293 (16%)
Query: 1 MYKIL---AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL---G 54
M ++ + +R + + LE+ L G
Sbjct: 1 MRTVILRRGLVALFAAAVSLGVITQAQAETLRIGYQKYGTLVLLK--AKGTLEKRLAAQG 58
Query: 55 YKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
P L ID + P A + + E
Sbjct: 59 VDVQWTEFPGGPQLLEGLNVGSIDFGVTGETP---PVFAQAAGADLLYVAYEPPAPTSEA 115
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+ V ++ + K + G+ + ++ + + + +
Sbjct: 116 ILVPKGSAIQSVQDLKG----------KKVVLNKGSNVHYLLVRALEDAGLKYSDIQTVF 165
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+ R ++ W+P+ ++ + + G + + +
Sbjct: 166 LPP----ADARAAFERGSVDAWVIWDPYQAAAEQQLQARTLRDGK-GIVDNHQFYLATKP 220
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKN 286
Y K P + L + + +PD +
Sbjct: 221 YAQKNPQVIATL---------------------VEEVRAVGEWSKANPDDVTK 252
>gi|312174053|emb|CBX82306.1| Taurine-binding periplasmic protein precursor [Erwinia amylovora
ATCC BAA-2158]
Length = 325
Score = 44.1 bits (102), Expect = 0.030, Method: Composition-based stats.
Identities = 28/226 (12%), Positives = 64/226 (28%), Gaps = 22/226 (9%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRSLKNKGIDIFMGY 82
V A + A + +E G K + K + R+L + + I
Sbjct: 22 QAVEVTIAYQTSAEPAKVAQADGTLAKES-GAKVDWRKFDSGSGVVRALASGDVQIGNIG 80
Query: 83 WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKI 142
P E + + G L V + ++L K
Sbjct: 81 SSPLAVAASQQVPIE---VFLLASQLGNSEALVVKKEI------------NHPQDLIGKR 125
Query: 143 YGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP 202
+ + + +L + + + +++ I + W P
Sbjct: 126 IAVPFISTTHYSLLAALKHWGIRPEQVQIVNLQPP----AITAAWQRGDIDGAYVWAPAV 181
Query: 203 INSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKN 247
+ L +++ +G ++ VVR D+ ++ P++
Sbjct: 182 NQLEKQGKVLTDSSQLAKWGAPTLDVWVVRKDFAEQHPDVVTAFAR 227
>gi|292489870|ref|YP_003532760.1| Taurine-binding periplasmic protein [Erwinia amylovora CFBP1430]
gi|292900912|ref|YP_003540281.1| taurine ABC transporter substrate-binding protein [Erwinia
amylovora ATCC 49946]
gi|291200760|emb|CBJ47893.1| taurine ABC transporter, substrate-binding protein [Erwinia
amylovora ATCC 49946]
gi|291555307|emb|CBA23631.1| Taurine-binding periplasmic protein precursor [Erwinia amylovora
CFBP1430]
Length = 325
Score = 44.1 bits (102), Expect = 0.030, Method: Composition-based stats.
Identities = 28/226 (12%), Positives = 64/226 (28%), Gaps = 22/226 (9%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRSLKNKGIDIFMGY 82
V A + A + +E G K + K + R+L + + I
Sbjct: 22 QAVEVTIAYQTSAEPAKVAQADGTLAKES-GAKVDWRKFDSGSGVVRALASGDVQIGNIG 80
Query: 83 WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKI 142
P E + + G L V + ++L K
Sbjct: 81 SSPLAVAASQQVPIE---VFLLASQLGNSEALVVKKEI------------NHPQDLIGKR 125
Query: 143 YGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP 202
+ + + +L + + + +++ I + W P
Sbjct: 126 IAVPFISTTHYSLLAALKHWGIRPEQVQIVNLQPP----AITAAWQRGDIDGAYVWAPAV 181
Query: 203 INSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKN 247
+ L +++ +G ++ VVR D+ ++ P++
Sbjct: 182 NQLEKQGKVLTDSSQLAKWGAPTLDVWVVRKDFAEQHPDVVTAFAR 227
>gi|229185128|ref|ZP_04312316.1| aliphatic sulfonates-binding protein [Bacillus cereus BGSC 6E1]
gi|228598385|gb|EEK56017.1| aliphatic sulfonates-binding protein [Bacillus cereus BGSC 6E1]
Length = 328
Score = 44.1 bits (102), Expect = 0.030, Method: Composition-based stats.
Identities = 28/250 (11%), Positives = 66/250 (26%), Gaps = 26/250 (10%)
Query: 2 YKILAVCLFLTTFSISY----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL---G 54
+K+L+ L ++ F A V+ EE G
Sbjct: 5 FKVLSFTLAISLFLFGCEKSTASSKKEDVTVQIGIQQGLSPLLLAQ-KKGWFEEEFKKEG 63
Query: 55 YKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
K P F ++ + +D P + A ++ +
Sbjct: 64 VKVKWTEFQSGPPYFEAIASNRLDFGEVGNSPVISAQAAGIEF---TEIANTSYARKGTG 120
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+ V +K EL K + G+ + ++ + K +I+
Sbjct: 121 ILVQKDSKITSVK----------ELKGKKIAVAKGSSAFNLLYRALDKEGINAKDVNVIQ 170
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+ + + + W+P +N + + + + R+
Sbjct: 171 LQPD----EAQPAFESGSVDAWAIWDPFISLHTVNKGAKVITDGEILNVSSPEFLIARTK 226
Query: 234 YLDKCPNISR 243
+ + P +
Sbjct: 227 FAKEHPELVE 236
>gi|170750614|ref|YP_001756874.1| NLPA lipoprotein [Methylobacterium radiotolerans JCM 2831]
gi|170657136|gb|ACB26191.1| NLPA lipoprotein [Methylobacterium radiotolerans JCM 2831]
Length = 266
Score = 44.1 bits (102), Expect = 0.030, Method: Composition-based stats.
Identities = 29/252 (11%), Positives = 63/252 (25%), Gaps = 11/252 (4%)
Query: 10 FLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFR 69
L ++S +R A T E L K
Sbjct: 6 LLAVAALSLGALPAGAETLRIGVVPGAYGDAVTVAAREAKAEGLDVKVVEFSDWTTPNVA 65
Query: 70 SLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQ 129
ID+ P +E I + Y L +
Sbjct: 66 LDA-GDIDVNFFQHRPFMENAAKQKGYAFDIVGLGILSNIGLYSLKHKGFDQIPVGGTVA 124
Query: 130 DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR---D 186
+ + + G ++ + + F ++E + F+++
Sbjct: 125 IANDPVNQGRGLLLLQKAG------LIKLKDGVGFLGTLDDVVENPKTLRFTEVEGPQLA 178
Query: 187 QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLK 246
+ + L + PH I + + G + V + P I + +
Sbjct: 179 RITGDVDLALGY-PHFIVAAGSFDPTSGLIYSGIEDRRFAVSFVTKAARKEDPVIRKFVT 237
Query: 247 NIKFSVALENEM 258
+ S A++ ++
Sbjct: 238 LFQNSEAVKQQI 249
>gi|220922628|ref|YP_002497930.1| aliphatic sulfonates family ABC transporter periplsmic
ligand-binding protein [Methylobacterium nodulans ORS
2060]
gi|219947235|gb|ACL57627.1| aliphatic sulfonates family ABC transporter, periplsmic
ligand-binding protein [Methylobacterium nodulans ORS
2060]
Length = 321
Score = 44.1 bits (102), Expect = 0.030, Method: Composition-based stats.
Identities = 31/272 (11%), Positives = 69/272 (25%), Gaps = 27/272 (9%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP 65
+ L + A + +RFA T IL+ + +
Sbjct: 12 GLAGSLAGSLAAPALVRAAPQTIRFAYQR--SSTLLT-----ILKTNGTLEQRLSPKGFG 64
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
V++ + + F A + I A Y I
Sbjct: 65 VSWHLF-----NSVIEPMNAGSTDFHADVADAVPIFTQAAGAPLTFYAKEDPSPSAEAII 119
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
+ +L AK G + G+ + + + + R + +
Sbjct: 120 VHADSPIRTVADLRAKTVGFQRGSGCHFILTAALKRAGLTPADIRPAHLNASDGAA---- 175
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
++ W+P + + +GF + Y V + + + P + ++
Sbjct: 176 AFERRSLDAWVIWDPFLAIAQAKSPVRVI-ADATGFSSYNRYYTVNTAFAEAHPEVVGVV 234
Query: 246 KNIKFSVALENEMMKLILNNKQDRQFVGRTML 277
E + + N + L
Sbjct: 235 ------FDALTEAGRWVKGNPK----AAAEFL 256
>gi|71736641|ref|YP_276998.1| taurine ABC transporter periplasmic binding protein [Pseudomonas
syringae pv. phaseolicola 1448A]
gi|257483754|ref|ZP_05637795.1| taurine ABC transporter, periplasmic binding protein [Pseudomonas
syringae pv. tabaci ATCC 11528]
gi|71557194|gb|AAZ36405.1| taurine ABC transporter, periplasmic binding protein [Pseudomonas
syringae pv. phaseolicola 1448A]
gi|320326462|gb|EFW82514.1| taurine ABC transporter, periplasmic binding protein [Pseudomonas
syringae pv. glycinea str. B076]
gi|320331755|gb|EFW87693.1| taurine ABC transporter, periplasmic binding protein [Pseudomonas
syringae pv. glycinea str. race 4]
gi|330872581|gb|EGH06730.1| taurine ABC transporter, periplasmic binding protein [Pseudomonas
syringae pv. glycinea str. race 4]
gi|330987197|gb|EGH85300.1| taurine ABC transporter, periplasmic binding protein [Pseudomonas
syringae pv. lachrymans str. M301315]
Length = 325
Score = 44.1 bits (102), Expect = 0.030, Method: Composition-based stats.
Identities = 35/297 (11%), Positives = 78/297 (26%), Gaps = 34/297 (11%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
K+ LT S++ A A D + + + Y+ K
Sbjct: 1 MKLHFSLRLLTALSLTGATFIAQAADFTVAYQTTVDP-------AKVAQADNAYE---KA 50
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+++R N I ++ + L +++A
Sbjct: 51 TDSKISWRKFDNGADVITAIASGDVQIGYLGSSPFTAAATRK---LPVETFLIATQIGAA 107
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
+ ++L K + + G+ +L + + ++ +
Sbjct: 108 EALVARNGSGINSPQDLIGKKVAVPFVSTGHYSLLAALKHWNIDPARVTILNLAPP---- 163
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I + W+P + L E++ G + +VR D+ +K P
Sbjct: 164 AIAAAWKRGDIDATYVWDPALGVAKETGKVLITSGELAKVGAPTFDAWIVRKDFANKHPE 223
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW--LIGVTTFD 295
+ + +QD + +P + L G D
Sbjct: 224 VVSAFAKVTLD---------AYARYRQDPAA----WI-ANPANVDKLTRLSGAKASD 266
>gi|317483938|ref|ZP_07942875.1| hypothetical protein HMPREF0179_00224 [Bilophila wadsworthia 3_1_6]
gi|316924812|gb|EFV45961.1| hypothetical protein HMPREF0179_00224 [Bilophila wadsworthia 3_1_6]
Length = 352
Score = 44.1 bits (102), Expect = 0.031, Method: Composition-based stats.
Identities = 33/249 (13%), Positives = 61/249 (24%), Gaps = 11/249 (4%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+ + L FS+ A A T +R A + A ++ G +I
Sbjct: 5 KFLSGLAAVLLAFSLCNAASAAPLTKIRTAWMDSYETFAMWYAKEKGWDKEAGLDIDILF 64
Query: 62 LAVPV-TFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ +L P++ + + +AV
Sbjct: 65 FDSGMAILNALPAGEWQYSCLGGVPAMMGNLRYGTSVIGV------GTDESACVAVLARP 118
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK-FSLKGFRLIEASELAS 179
K+ K+ G+ G + E +
Sbjct: 119 DNPVFKTKGLNPKHPGVFGSPEDVRGKTILCTTVSSAHFALTAWLDAVGVKPTEVTIKNM 178
Query: 180 FS-QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
Q N I W PH + + + + G + V + Y D
Sbjct: 179 DQPQALAAFENGIGDFVALWAPH-MYAGTDKGWKVAGSAALCGKGTPLVLVADTKYADAH 237
Query: 239 PNI-SRLLK 246
P I ++ L
Sbjct: 238 PEITAKFLS 246
>gi|317493985|ref|ZP_07952401.1| YaeC family lipoprotein [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316917758|gb|EFV39101.1| YaeC family lipoprotein [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 271
Score = 44.1 bits (102), Expect = 0.031, Method: Composition-based stats.
Identities = 27/283 (9%), Positives = 70/283 (24%), Gaps = 24/283 (8%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K +AV L + P ++ + + + ++ G +
Sbjct: 5 FKSIAVVGALLGSLALAGCGQEEKDPNHIKVGVIVGAEQQV-AEVAQKVAKDKYGLDVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V +L ID P L++ I + A Y +
Sbjct: 64 VTFNDYVLPNEALSKGDIDANAFQHKPYLDQQIKDRGYKLVPVGSTFVYPIAGYSKKIKS 123
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ + + + G ++ + + + E +
Sbjct: 124 LSELQDGSQVALPNDPTNLGRSLLLLQKVG------LIKLKDGIGLLPTVLDVTENPKKL 177
Query: 179 SFSQIR-----RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
++ R + A+ + + S + + G + V +V +
Sbjct: 178 KLVELEAPQLPRSLDDAQIALAVINTTYA--SQIGLTPAKDGIFVEDKDSPYVNLIVARE 235
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
N+ + ++ + E I N +
Sbjct: 236 DNKDAENVKKFVQAYQ--SDEVYEAANKIFNGG-----AVKGW 271
>gi|225864888|ref|YP_002750266.1| putative sulfonate ABC transporter, sulfonate-binding protein
[Bacillus cereus 03BB102]
gi|225790897|gb|ACO31114.1| putative sulfonate ABC transporter, sulfonate-binding protein
[Bacillus cereus 03BB102]
Length = 328
Score = 43.7 bits (101), Expect = 0.031, Method: Composition-based stats.
Identities = 33/287 (11%), Positives = 79/287 (27%), Gaps = 31/287 (10%)
Query: 2 YKILAVCLFLTTFSISY----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL---G 54
+K+L+ L ++ F A V+ EE G
Sbjct: 5 FKVLSFTLAISLFLFGCEKSTASSKKEDVTVQIGIQQGLSPLLLAQ-KKGWFEEEFKKEG 63
Query: 55 YKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
K P F ++ + +D P + A ++ +
Sbjct: 64 VKVKWTEFQSGPPYFEAIASNRLDFGEVGNSPVISAQAAGIEF---TEIANTSYARKGTG 120
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+ V +K EL K + G+ + ++ K +I+
Sbjct: 121 ILVQKDSKITSVK----------ELKGKKIAVAKGSSAFNLLYRALDKEGIDAKDVNVIQ 170
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+ + + + W+P +N + + + + R+
Sbjct: 171 LQPD----EAQPAFESGSVDAWAIWDPFISLHTVNKGAKVITDGEILNVSSPEFLIARTK 226
Query: 234 YLDKCPN-ISRLL----KNIKFSVALENEMMKLILNNKQDRQFVGRT 275
+ + P + + L K + +E +K+ + K+ + +
Sbjct: 227 FAKEHPGLVEKFLKVYEKARVWQDENLDEAIKIYTSAKKIDAEIVKE 273
>gi|294069|gb|AAA25546.1| lipoprotein 1 [Mannheimia haemolytica]
Length = 278
Score = 43.7 bits (101), Expect = 0.031, Method: Composition-based stats.
Identities = 32/263 (12%), Positives = 74/263 (28%), Gaps = 23/263 (8%)
Query: 2 YKILAVCLFLTTFSISY----------ARDADSCTPVRFADTGWTDIAATTAMTSVILEE 51
KIL V L + A A + ++ + + I +E
Sbjct: 4 KKILGVALVSALALTACKEEKKAESTRAPAAQAPAKIKVGVMSGPEHTV-AERAAQIAKE 62
Query: 52 ILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAK 111
G + L + +K + PYL++ S NL
Sbjct: 63 KYGLEVEFVLFNDYALPNTAVSK-------GDLDANAFQHKPYLDKDSQSKGLNNLVIVG 115
Query: 112 YMLAVNDVGFALGIKSYQDIAK-----YKKELGAKIYGIEPGNEGNQRILDMINNNKFSL 166
G++ +K+ ++A+ + + ++ + +N
Sbjct: 116 NTFVYPLAGYSKKVKNVSELAEGAVIAVPNDPSNLARALILILLEKLGLIKLKDNTNLFS 175
Query: 167 KGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV 226
+IE + ++ N+ V L+ + + ++ G + V
Sbjct: 176 TSVDIIENPKNLKIKEVDTSIAANVSDVDLAVVNNTYAGQVGLNTQDHGVFVESKDSPYV 235
Query: 227 YTVVRSDYLDKCPNISRLLKNIK 249
+V N+ +K+ +
Sbjct: 236 NIIVARQDNKDAANVQNFIKSYQ 258
>gi|238796639|ref|ZP_04640146.1| D-methionine-binding lipoprotein [Yersinia mollaretii ATCC 43969]
gi|238719617|gb|EEQ11426.1| D-methionine-binding lipoprotein [Yersinia mollaretii ATCC 43969]
Length = 271
Score = 43.7 bits (101), Expect = 0.031, Method: Composition-based stats.
Identities = 25/268 (9%), Positives = 71/268 (26%), Gaps = 18/268 (6%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K +A L P ++ + + + ++ G +
Sbjct: 5 FKSIAAVSALIGTLALVGCGPAEKDPNHIKVGVIVGAEQQV-AEVAQKVAKDKYGLDVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V +L ID+ P L++ I + + A Y +
Sbjct: 64 VTFNDYVLPNEALSKGDIDLNAFQHKPYLDQQIKDRGYKLVSVGNSFVYPIAGYSKKIKS 123
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ + + + G ++ + + ++E +
Sbjct: 124 LDELQPGSQVALPNDPTNLGRSLLLLQKVG------LIKLKDGVGLLPTALDVVENPKNL 177
Query: 179 SFSQIR-----RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
++ R + A+ + + S + + G + V +V +
Sbjct: 178 KLVELEAPQLPRSLDDQQIALAIINTTYA--SQIGLTPAKDGLFVEDKESPYVNLIVARE 235
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKL 261
N+ + ++ + S + + K
Sbjct: 236 DNKDAENVKKFVQAYQ-SDEVYDAANKA 262
>gi|238759921|ref|ZP_04621075.1| D-methionine-binding lipoprotein [Yersinia aldovae ATCC 35236]
gi|238701828|gb|EEP94391.1| D-methionine-binding lipoprotein [Yersinia aldovae ATCC 35236]
Length = 271
Score = 43.7 bits (101), Expect = 0.032, Method: Composition-based stats.
Identities = 25/268 (9%), Positives = 71/268 (26%), Gaps = 18/268 (6%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K +A L P ++ + + + ++ G +
Sbjct: 5 FKSIAAVSALIGTLALVGCGPAEKDPNHIKVGVIVGAEQQV-AEVAQKVAKDKYGLDVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V +L ID+ P L++ I + + A Y +
Sbjct: 64 VTFNDYVLPNEALSKGDIDLNAFQHKPYLDQQIKDRGYKLVSVGNSFVYPIAGYSKKIKS 123
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ + + + G ++ + + ++E +
Sbjct: 124 LEELQPGSQVALPNDPTNLGRSLLLLQKVG------LIKLKDGVGLLPTVLDVVENPKNL 177
Query: 179 SFSQIR-----RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
++ R + A+ + + S + + G + V +V +
Sbjct: 178 KLVELEAPQLPRSLDDQQIALAIINTTYA--SQIGLTPAKDGLFVEDKDSPYVNLIVARE 235
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKL 261
N+ + ++ + S + + K
Sbjct: 236 DNKDAENVKKFVQAYQ-SDEVYDAANKA 262
>gi|261822738|ref|YP_003260844.1| DL-methionine transporter substrate-binding subunit [Pectobacterium
wasabiae WPP163]
gi|261606751|gb|ACX89237.1| lipoprotein, YaeC family [Pectobacterium wasabiae WPP163]
Length = 271
Score = 43.7 bits (101), Expect = 0.033, Method: Composition-based stats.
Identities = 24/278 (8%), Positives = 72/278 (25%), Gaps = 13/278 (4%)
Query: 1 MYKILAVCLFLTTFSISYARDADSC-TPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+ I + + +++ + ++ + + + ++ G +
Sbjct: 5 LKSIATIGALIGALALAGCGQEEKNPNHIKVGVIVGAEQQV-AEIAQKVAKDKYGLDVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V +L ID+ P L++ I + + A Y +
Sbjct: 64 VTFNDYVLPNEALSKGDIDLNAFQHKPYLDQQIKDRGYKLVSVGNSFVYPIAGYSKKIKS 123
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ + + + G + + ++ +
Sbjct: 124 LNELQDGAQIALPNDPTNLGRSLLLLQKVGLIKLKDNVGLLPT-VLDVTENPKNIKLVEL 182
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
Q+ R + A+ + + S +N+ G + V +V +
Sbjct: 183 EAPQLPRSLDDAQIALAVINTTYA--SQINLTPTKDGLFVEEKDSPYVNLLVSREDNKDA 240
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
N+ + ++ + N+ I N +
Sbjct: 241 ENVKKFVQAYQ--SDEVNDAANKIFNGG-----AVKGW 271
>gi|301054430|ref|YP_003792641.1| alkanesulfonates-binding protein [Bacillus anthracis CI]
gi|300376599|gb|ADK05503.1| alkanesulfonates-binding protein [Bacillus cereus biovar anthracis
str. CI]
Length = 328
Score = 43.7 bits (101), Expect = 0.033, Method: Composition-based stats.
Identities = 28/250 (11%), Positives = 66/250 (26%), Gaps = 26/250 (10%)
Query: 2 YKILAVCLFLTTFSISY----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL---G 54
+K+L+ L ++ F A V+ EE G
Sbjct: 5 FKVLSFTLAISLFLFGCEKSTASSKKEDVTVQIGIQQGLSPLLLAQ-KKGWFEEEFKKEG 63
Query: 55 YKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
K P F ++ + +D P + A ++ +
Sbjct: 64 VKVKWTEFQSGPPYFEAIASNRLDFGEVGNSPVISAQAAGIEF---TEIANTSYARKGTG 120
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+ V +K EL K + G+ + ++ + K +I+
Sbjct: 121 ILVQKDSKITSVK----------ELKGKKIAVAKGSSAFNLLYRALDKEGINAKDVNVIQ 170
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+ + + + W+P +N + + + + R+
Sbjct: 171 LQPD----EAQPAFESGSVDAWAIWDPFISLHTVNKGAKVITDGEILNVSSPEFLIARTK 226
Query: 234 YLDKCPNISR 243
+ + P +
Sbjct: 227 FAKEHPELVE 236
>gi|262040382|ref|ZP_06013627.1| D-methionine ABC superfamily ATP binding cassette transporter,
binding protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259042245|gb|EEW43271.1| D-methionine ABC superfamily ATP binding cassette transporter,
binding protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 279
Score = 43.7 bits (101), Expect = 0.033, Method: Composition-based stats.
Identities = 21/246 (8%), Positives = 59/246 (23%), Gaps = 7/246 (2%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP 65
A + + + + ++ + + + +E G + + +
Sbjct: 19 AAVMLAGLALVGCDQKGNEAKHIKVGVINGAEQDV-AEVAKKVAKEKYGLEVELVGFSGS 77
Query: 66 VTFRSLKN-KGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
+ N +D + P LE+ + A Y + V
Sbjct: 78 LLPNESTNAGDLDANVFQHRPFLEQDNKAHNYHLVAVGNTFVFPMAGYSRKIKSVAELKD 137
Query: 125 IKSYQDIAKYKKELGAKIYGIEPG-NEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
+ A + + + + L +Q+
Sbjct: 138 GATIAIPNDPTNLGRALLLLQKEKLITLKAGTGLLPTAVDITDNPHNLKIMELEG--AQL 195
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
R + V + + + + G I V +V + N+
Sbjct: 196 PRVLDDPKVEVAIISTTY--LQQTGLSPVRDGIFIEDKNSPYVNIIVTREDNKDAENVKE 253
Query: 244 LLKNIK 249
+++ +
Sbjct: 254 FMQSYQ 259
>gi|50122447|ref|YP_051614.1| DL-methionine transporter substrate-binding subunit [Pectobacterium
atrosepticum SCRI1043]
gi|49612973|emb|CAG76424.1| D-methionine-binding lipoprotein [Pectobacterium atrosepticum
SCRI1043]
Length = 271
Score = 43.7 bits (101), Expect = 0.033, Method: Composition-based stats.
Identities = 24/278 (8%), Positives = 71/278 (25%), Gaps = 13/278 (4%)
Query: 1 MYKILAVCLFLTTFSISYARDADSC-TPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+ I + + +++ + ++ + + + ++ G +
Sbjct: 5 LKSIATIGALIGALALAGCGQEEKNPNHIKVGVIVGAEQQV-AEIAQKVAKDKYGLDVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V +L ID+ P L++ I + + A Y +
Sbjct: 64 VTFNDYVLPNEALSKGDIDLNAFQHKPYLDQQIKDRGYKLVSVGNSFVYPIAGYSKKIKS 123
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ + + G + + ++ +
Sbjct: 124 LNELQDGAQVAIPNDPTNLGRTLLLLQKVGLIKLKDNVGLLPT-VLDVTENPKNIKLVEL 182
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
Q+ R + A+ + + S +N+ G + V +V +
Sbjct: 183 EAPQLPRSLDDAQIALAVINTTYA--SQINLTPTKDGLFVEEKDSPYVNLLVSREDNKDA 240
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
N+ + ++ + N+ I N +
Sbjct: 241 ENVKKFVQAYQ--SDEVNDAANKIFNGG-----AVKGW 271
>gi|228940035|ref|ZP_04102609.1| aliphatic sulfonates-binding protein [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228972930|ref|ZP_04133525.1| aliphatic sulfonates-binding protein [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228979513|ref|ZP_04139843.1| aliphatic sulfonates-binding protein [Bacillus thuringiensis Bt407]
gi|228780210|gb|EEM28447.1| aliphatic sulfonates-binding protein [Bacillus thuringiensis Bt407]
gi|228786803|gb|EEM34787.1| aliphatic sulfonates-binding protein [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228819647|gb|EEM65698.1| aliphatic sulfonates-binding protein [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|326940688|gb|AEA16584.1| alkanesulfonates-binding protein [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 328
Score = 43.7 bits (101), Expect = 0.034, Method: Composition-based stats.
Identities = 28/254 (11%), Positives = 68/254 (26%), Gaps = 27/254 (10%)
Query: 2 YKILAVCLFLTTFSISY----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL---G 54
+KIL+ L ++ F + ++ EE G
Sbjct: 5 FKILSFALAISVFLLGCEKSTVSSKKEDVTIQIGIQQGLSPLLLAK-KKGWFEEEFKKEG 63
Query: 55 YKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
K P F ++ + +D P + A ++ +
Sbjct: 64 VKVKWTEFQSGPPYFEAIASNRLDFGEVGNSPVISAQAAGIGF---TEIANTSYARKGTG 120
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+ V +K + K + G+ + ++ K +I+
Sbjct: 121 ILVQKDSKIASVKDLKG----------KKIAVAKGSSAFNLLYRALDKEGIDAKDVNVIQ 170
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+ + + + W+P LN + + + + + R+
Sbjct: 171 LQPD----EAQPAFESGSVDAWAIWDPFISLHTLNKGAKVIADGETLNVSSPEFLITRTK 226
Query: 234 YLDKCPN-ISRLLK 246
+ + P + + LK
Sbjct: 227 FAKEHPELVEKFLK 240
>gi|194015173|ref|ZP_03053789.1| ABC superfamily ATP binding cassette transporter, binding protein
[Bacillus pumilus ATCC 7061]
gi|194012577|gb|EDW22143.1| ABC superfamily ATP binding cassette transporter, binding protein
[Bacillus pumilus ATCC 7061]
Length = 273
Score = 43.7 bits (101), Expect = 0.035, Method: Composition-based stats.
Identities = 30/258 (11%), Positives = 68/258 (26%), Gaps = 15/258 (5%)
Query: 1 MYKILAVCLFLTTFSISYAR----DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
M K++ LFL I A +A + A + +L+E GY
Sbjct: 1 MKKLILSALFLAFAGILAACGSSNNASDSKTITVAASKTPHAEILEE-AKPLLKEK-GYD 58
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+K+L+ + + + + ++ + + +
Sbjct: 59 LKVKVLSDYKMYNKALAEK---EVDANFFQHIPYLNEENKSNKDYNLVSAGAVHLEPFGI 115
Query: 117 NDVGFA-----LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
+ + ++ G +D IN ++K
Sbjct: 116 YSKKYKSVKDIPNGGTIIMTNNVAEQGRMLALLQNAGVIKIDPKVDTINATVKNIKENPK 175
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVR 231
+ + + N+ + I + LN E + + VR
Sbjct: 176 NLKFKKIAPELTAKAYENSEGDAVFINVNYAIQNKLNPKKDSIELEQTKNNPYANIVAVR 235
Query: 232 SDYLDKCPNISRLLKNIK 249
+K I L++ +
Sbjct: 236 KG-EEKSDKIKTLMEVLH 252
>gi|293611275|ref|ZP_06693573.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292826526|gb|EFF84893.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 327
Score = 43.7 bits (101), Expect = 0.035, Method: Composition-based stats.
Identities = 29/275 (10%), Positives = 78/275 (28%), Gaps = 31/275 (11%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSV--ILEEIL-GYKTN 58
+I A+ L T + + +R + + A+ + E+ K
Sbjct: 17 KRISAITLLGLTIAAPAWAIDPTVKELRIG---FQKSSINFAIAKQQKLFEQEFPNAKVT 73
Query: 59 IKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
P +L +D+ + P A + + E + + V
Sbjct: 74 WNEFPAGPQILEALAVGSLDVGVTGDTP---PVYAQAAGKPLYYIAYEAAKPLASAILVP 130
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
K K+L K ++ G+ + ++ + + I +
Sbjct: 131 K----------NSQLKQLKDLKGKRIALQKGSSSHYLLVQAVRKAGLNWSDITPIWLTP- 179
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDK 237
+ R + + W+P+ ++ L + + + +++ +
Sbjct: 180 ---ADARAAFQKGAVDAWAIWDPYFASAQLEDQARVLASGKGLSPNYT-FYLAAPNFVKQ 235
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
P L + N+ K + +++ +
Sbjct: 236 HPKAVSGL------IKQINQADKWVQSHQAETAGA 264
>gi|227327746|ref|ZP_03831770.1| DL-methionine transporter substrate-binding subunit [Pectobacterium
carotovorum subsp. carotovorum WPP14]
Length = 271
Score = 43.7 bits (101), Expect = 0.035, Method: Composition-based stats.
Identities = 24/278 (8%), Positives = 72/278 (25%), Gaps = 13/278 (4%)
Query: 1 MYKILAVCLFLTTFSISYARDADSC-TPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+ I + + +++ + ++ + + + ++ G +
Sbjct: 5 LKSIATIGALIGALALAGCGQEEKNPNHIKVGVIVGAEQQV-AEVAQKVAKDKYGLDVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V +L ID+ P L++ I + + A Y +
Sbjct: 64 VTFNDYVLPNEALSKGDIDLNAFQHKPYLDQQIKDRGYKLVSVGNSFVYPIAGYSKKIKS 123
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ + + + G + + ++ +
Sbjct: 124 LNELQDGAQVAIPNDPTNLGRSLLLLQKVGLIKLKDNVGLLPT-VLDVTENPKNIKLVEL 182
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
Q+ R + A+ + + S +N+ G + V +V +
Sbjct: 183 EAPQLPRSLDDAQIALAVINTTYA--SQINLTPTKDGLFVEEKDSPYVNLLVSREDNKDA 240
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
N+ + ++ + N+ I N +
Sbjct: 241 ENVKKFVQAYQ--SDEVNDAANKIFNGG-----AVKGW 271
>gi|254439484|ref|ZP_05052978.1| phosphonate ABC transporter, periplasmic phosphonate-binding
protein [Octadecabacter antarcticus 307]
gi|198254930|gb|EDY79244.1| phosphonate ABC transporter, periplasmic phosphonate-binding
protein [Octadecabacter antarcticus 307]
Length = 314
Score = 43.7 bits (101), Expect = 0.035, Method: Composition-based stats.
Identities = 35/207 (16%), Positives = 59/207 (28%), Gaps = 16/207 (7%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIA---ATTAMTSVILEEILGYKT 57
M KI+A+ L T S + DA + + R G + + + +E+ LG T
Sbjct: 13 MKKIIALALMTTAMSSAAFADAHAISEFRIGILGGENAQDRMNSNECLRIAVEDALGVPT 72
Query: 58 NI-KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ + L ID+ + S E S LV N G+ ++
Sbjct: 73 RLFAPADYNGVIQGLLGGTIDLSLMG-PSSYAAVYIADPEAVSPILVKINADGSTGYYSI 131
Query: 117 NDVGFALGIKSYQDIAKYKKEL----GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
G+ S + + Y I M + + F F
Sbjct: 132 GFARADSGVTSLEGMQDKVFGFGDPNSTSGYLIPSVEIPALISATMESGDYFGEVRF--- 188
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWE 199
Q N ++W
Sbjct: 189 ----TGGHEQTIVAVNNGDVDGGVTWT 211
>gi|329904215|ref|ZP_08273698.1| tolB protein precursor [Oxalobacteraceae bacterium IMCC9480]
gi|327548111|gb|EGF32832.1| tolB protein precursor [Oxalobacteraceae bacterium IMCC9480]
Length = 421
Score = 43.7 bits (101), Expect = 0.036, Method: Composition-based stats.
Identities = 32/218 (14%), Positives = 61/218 (27%), Gaps = 35/218 (16%)
Query: 1 MYKILAVCLFLTTFSISYARDAD--------SCTPVRFADTGWTDIAATTAMTSVILEEI 52
M K L L ++ A A + A + D + A S I++
Sbjct: 1 MKKTFFSTLALLGLVLATAAHAQLRVDIAGVGANQIPIAIATFADESIAPAQVSAIIKAD 60
Query: 53 LGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKY 112
L F+ + + YP + A L GS++ +A+ +Y
Sbjct: 61 L---------MRSGYFKIIDAGTMSETSEINYPDWKSRGADALVVGSVQRLADGRFDVRY 111
Query: 113 MLAVNDVGF--------ALGIKSYQDIAKYKKELGAKIYGI-EPGNEGNQRILDMINNNK 163
L A ++ K ++ K+ G+ + +
Sbjct: 112 KLLDMIKSAPLSALSLTAPEGRTRVTAHKIADDIYEKLTGVRGAFATRIAYVTKSGKEYR 171
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPH 201
A + + R+N P + +W P
Sbjct: 172 LE-------VADADGEDTNV--ALRSNEPIISPAWSPD 200
>gi|227327189|ref|ZP_03831213.1| lipoprotein-28 precursor [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 271
Score = 43.7 bits (101), Expect = 0.036, Method: Composition-based stats.
Identities = 24/281 (8%), Positives = 65/281 (23%), Gaps = 26/281 (9%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
++A + + + S ++ + + + +E G + +
Sbjct: 9 LVAGMVTAAMALTACDSASHSANHIKVGVINGAEQDV-ADVAKKVAKEKYGLDVELVGFS 67
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+ +K + F+ E KLVA G++
Sbjct: 68 GSLLPNEATDKSD---LDANVFQHRPFLEQQNREHGYKLVAV-----GNTFVFPMAGYSK 119
Query: 124 GIKSYQDIAKYKK---ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
IK+ D+ G ++ + + +
Sbjct: 120 KIKNINDLKDGDTIAIPFDPTNLGRALLLLQKTGLITLKPDTGLLPTVLDITTNPHNLRI 179
Query: 181 SQIRRD-----QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYL 235
++ + V + + + G I V +V +
Sbjct: 180 MEVEGAQLPRLLDDPQVTVAIISTTY--IQQTGLTPTKDGIFIEDKESPYVNIIVTRENN 237
Query: 236 DKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
+ N+ ++ + + I N +
Sbjct: 238 KEAENVKNFIQAYQ--SDEVEQAANRIFNGG-----AVKGW 271
>gi|26986976|ref|NP_742401.1| taurine ABC transporter, periplasmic binding protein [Pseudomonas
putida KT2440]
gi|148545504|ref|YP_001265606.1| taurine ABC transporter periplasmic binding protein [Pseudomonas
putida F1]
gi|24981590|gb|AAN65865.1|AE016214_10 taurine ABC transporter, periplasmic taurine-binding protein
[Pseudomonas putida KT2440]
gi|148509562|gb|ABQ76422.1| taurine ABC transporter, periplasmic binding protein [Pseudomonas
putida F1]
gi|313496597|gb|ADR57963.1| TauA [Pseudomonas putida BIRD-1]
Length = 323
Score = 43.7 bits (101), Expect = 0.036, Method: Composition-based stats.
Identities = 19/117 (16%), Positives = 37/117 (31%), Gaps = 17/117 (14%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I + W+P + N L E++ G + +VR D+ +K P+
Sbjct: 162 AIIAAWKRGDIDATYVWDPALGVAKENGKVLITSGELAQKGAPTFDAWIVRKDFAEKHPD 221
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRT--HPDLLKNWLIGVTTFD 295
+ + + + ++D + L + D L L G D
Sbjct: 222 VVKAFAKVTLD---------AYADYRKDP----KAWLADKGNVDKLVK-LSGAKASD 264
>gi|183598204|ref|ZP_02959697.1| hypothetical protein PROSTU_01586 [Providencia stuartii ATCC 25827]
gi|188020371|gb|EDU58411.1| hypothetical protein PROSTU_01586 [Providencia stuartii ATCC 25827]
Length = 256
Score = 43.7 bits (101), Expect = 0.037, Method: Composition-based stats.
Identities = 28/260 (10%), Positives = 68/260 (26%), Gaps = 15/260 (5%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K L L T ++S A + + + + T AM + E + ++
Sbjct: 1 MKKNLITLLAGVTMTLSMASHTVAAEKITV----FAAASLTNAMNE--ISEQYQKENKVE 54
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA-VNDV 119
+++ + +L + + S ++ Y + + + L +
Sbjct: 55 VVSSYASSSTLARQIEQGAPANLFISADQQWMNYAIDKHLMVENTRYTLLGNELVLIAPK 114
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+ +KK L + I + + +
Sbjct: 115 DSKIEKVEINKQTDWKKLLDGGRLAVGDPEHVPVGIYAKEALSYLGAWDTVNPLLARTNN 174
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV------VRSD 233
+ + + + + S + E + V D
Sbjct: 175 VRSGMALVERDEAPLGIVYGSDAVASQKVKVVGIFPADSHKPVEYPMAIVKDQDNQATRD 234
Query: 234 YLD--KCPNISRLLKNIKFS 251
+ + K P S + K F+
Sbjct: 235 FYEYLKTPAASEVFKRYGFT 254
>gi|238787206|ref|ZP_04631005.1| D-methionine-binding lipoprotein [Yersinia frederiksenii ATCC
33641]
gi|238724468|gb|EEQ16109.1| D-methionine-binding lipoprotein [Yersinia frederiksenii ATCC
33641]
Length = 271
Score = 43.7 bits (101), Expect = 0.037, Method: Composition-based stats.
Identities = 29/268 (10%), Positives = 74/268 (27%), Gaps = 18/268 (6%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K +A L P ++ + + + ++ G +
Sbjct: 5 FKSIAAVSALIGTLALVGCGPAEKDPNHIKVGVIVGAEQQV-AEVAQKVAKDKYGLDVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V +L ID+ P L++ I + + A Y +
Sbjct: 64 VTFNDYVLPNEALSKGDIDLNAFQHKPYLDQQIKDRGYKLVAVGNSFVYPIAGYSKKI-K 122
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
L S + LG + +E ++ + + ++E +
Sbjct: 123 SLEELQPGSQVALPNDPTNLGRSLLLLEK-----VGLIKLKDGVGLLPTVLDVVENPKNL 177
Query: 179 SFSQIR-----RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
++ R + A+ + + S + + G + V +V +
Sbjct: 178 KLVELEAPQLPRSLDDQQIALAVINTTYA--SQIGLTPAKDGLFVEDKESPYVNLIVARE 235
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKL 261
N+ + ++ + S + + K
Sbjct: 236 DNKDAENVKKFVQAYQ-SDEVYDAANKA 262
>gi|66048048|ref|YP_237889.1| alkanesulfonate transporter substrate-binding subunit [Pseudomonas
syringae pv. syringae B728a]
gi|63258755|gb|AAY39851.1| ABC transporter, substrate-binding protein, aliphatic sulphonates
[Pseudomonas syringae pv. syringae B728a]
Length = 311
Score = 43.7 bits (101), Expect = 0.038, Method: Composition-based stats.
Identities = 30/253 (11%), Positives = 64/253 (25%), Gaps = 24/253 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSV--ILEEILG-YKT 57
M + L + AD +R + T + +LE+ K
Sbjct: 1 MKPFTFIAAILAFSGLFGTASADEPDTLRIGYQK---GSITLVLAKENGLLEKRFPEKKI 57
Query: 58 NIKLLAVPVTFRSLKN-KGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
N +DI P + +A
Sbjct: 58 KWVEFPAGPQMLEALNIGSLDIASTGDIPPIFAQVAGADL-------------VYIGAEP 104
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ + EL + ++ G+ + +L ++N + K + I +
Sbjct: 105 PKPQVETLLVRNESPVHSVAELKGRKVALQKGSSSHNVVLRVLNKAGLTFKDIQPIYLTP 164
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
+ R N + W+P+ + H YT R+ +
Sbjct: 165 ----ADARAAFENGSVDAWAIWDPYYSIAMSEGHSRLLANGEGLGLSGPFYTARRAFAEE 220
Query: 237 KCPNISRLLKNIK 249
+ ++L +
Sbjct: 221 NAALVQQVLDELT 233
>gi|229523611|ref|ZP_04413016.1| ABC-type tungstate transport system binding protein [Vibrio
cholerae bv. albensis VL426]
gi|229337192|gb|EEO02209.1| ABC-type tungstate transport system binding protein [Vibrio
cholerae bv. albensis VL426]
Length = 275
Score = 43.7 bits (101), Expect = 0.039, Method: Composition-based stats.
Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 6/95 (6%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYKT 57
M K + +SY+ + T +R A T + + +L E+ GYK
Sbjct: 5 MKKTSFTLAAASLILVSYSASSADDTRIRLAT---TTSTNDSGLLDYLLPRFEQDTGYKV 61
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIA 92
++ + +N +D+ M + + F+
Sbjct: 62 DVIATGTGKALKMGENGDVDLVMTHAPKAEASFVE 96
>gi|119943840|ref|YP_941520.1| taurine ABC transporter, periplasmic binding protein [Psychromonas
ingrahamii 37]
gi|119862444|gb|ABM01921.1| taurine ABC transporter, periplasmic binding protein [Psychromonas
ingrahamii 37]
Length = 335
Score = 43.7 bits (101), Expect = 0.039, Method: Composition-based stats.
Identities = 36/257 (14%), Positives = 75/257 (29%), Gaps = 21/257 (8%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-I 59
M K + + + +A + V G + + ++E+ GYK +
Sbjct: 1 MKKCKPLKIMAAMAGLFFASTLAAKD-VTIGYMGMNNPWKHA-INEKLIEKETGYKVDWR 58
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ + ++ + IDI P + E + + EN+ A L V +
Sbjct: 59 RFYSGSKVITAMASGSIDIASAGSSPIAAAV--SHGIEIELVWILENIADA-EALVVRN- 114
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
GI S D+ + I + +F L + + +
Sbjct: 115 --GAGITSPSDLKGKR---------IAVPFVSTTHFHTLFALEQFGLSDEDVRLINMQPN 163
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY-TVVRSDYLDKC 238
I W+P + L +S +G+ + VV + +
Sbjct: 164 T--IGAAWERGDIDGAFIWDPVLGKIKKDGKVLITSRTLSSWGKPTFDGLVVDKKFGKEN 221
Query: 239 PNISRLLKNIKFSVALE 255
+ + I + E
Sbjct: 222 ADFMAKVLKIAADLDQE 238
>gi|227114056|ref|ZP_03827712.1| DL-methionine transporter substrate-binding subunit [Pectobacterium
carotovorum subsp. brasiliensis PBR1692]
gi|253689706|ref|YP_003018896.1| lipoprotein, YaeC family [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251756284|gb|ACT14360.1| lipoprotein, YaeC family [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 271
Score = 43.7 bits (101), Expect = 0.039, Method: Composition-based stats.
Identities = 24/278 (8%), Positives = 72/278 (25%), Gaps = 13/278 (4%)
Query: 1 MYKILAVCLFLTTFSISYARDADSC-TPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+ I + + +++ + ++ + + + ++ G +
Sbjct: 5 LKSIATIGALIGALALAGCGQEEKNPNHIKVGVIVGAEQQV-AEVAQKVAKDKYGLDVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V +L ID+ P L++ I + + A Y +
Sbjct: 64 VTFNDYVLPNEALSKGDIDLNAFQHKPYLDQQIKDRGYKLVSVGNSFVYPIAGYSKKIKS 123
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ + + + G + + ++ +
Sbjct: 124 LNELQDGAQVALPNDPTNLGRSLLLLQKVGLIKLKDNVGLLPT-VLDVTENPKNIKLVEL 182
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
Q+ R + A+ + + S +N+ G + V +V +
Sbjct: 183 EAPQLPRSLDDAQIALAVINTTYA--SQINLTPTKDGLFVEEKDSPYVNLLVSREDNKDA 240
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
N+ + ++ + N+ I N +
Sbjct: 241 ENVKKFVQAYQ--SDEVNDAANKIFNGG-----AVKGW 271
>gi|238784907|ref|ZP_04628907.1| D-methionine-binding lipoprotein [Yersinia bercovieri ATCC 43970]
gi|238714224|gb|EEQ06236.1| D-methionine-binding lipoprotein [Yersinia bercovieri ATCC 43970]
Length = 271
Score = 43.7 bits (101), Expect = 0.039, Method: Composition-based stats.
Identities = 25/268 (9%), Positives = 70/268 (26%), Gaps = 18/268 (6%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K +A L P ++ + + + ++ G +
Sbjct: 5 FKSIAAVSALIGTLALVGCGPAEKDPNHIKVGVIVGAEQQV-AEVAQKVAKDKYGLDVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V +L ID+ P L++ I + + A Y +
Sbjct: 64 VTFNDYVLPNEALSKGDIDLNAFQHKPYLDQQIKDRGYKLVSVGNSFVYPIAGYSKKIKS 123
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ + + + G ++ + ++E +
Sbjct: 124 LEELQPGSQVALPNDPTNLGRSLLLLQKVG------LIKLKEGVGLLPTVLDVVENPKNL 177
Query: 179 SFSQIR-----RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
++ R + A+ + + S + + G + V +V +
Sbjct: 178 KLVELEAPQLPRSLDDQQIALAIINTTYA--SQIGLTPAKDGLFVEDKESPYVNLIVARE 235
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKL 261
N+ + ++ + S + + K
Sbjct: 236 DNKDAENVKKFVQAYQ-SDEVYDAANKA 262
>gi|238763951|ref|ZP_04624907.1| D-methionine-binding lipoprotein [Yersinia kristensenii ATCC 33638]
gi|238697768|gb|EEP90529.1| D-methionine-binding lipoprotein [Yersinia kristensenii ATCC 33638]
Length = 271
Score = 43.7 bits (101), Expect = 0.040, Method: Composition-based stats.
Identities = 25/268 (9%), Positives = 71/268 (26%), Gaps = 18/268 (6%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K +A L P ++ + + + ++ G +
Sbjct: 5 FKSIAAVSALIGTLALVGCGPAEKDPNHIKVGVIVGAEQQV-AEVAQKVAKDKYGLDVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V +L ID+ P L++ I + + A Y +
Sbjct: 64 VTFNDYVLPNEALSKGDIDLNAFQHKPYLDQQIKDRGYKLVSVGNSFVYPIAGYSKKIKS 123
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ + + + G ++ + + ++E +
Sbjct: 124 LEELQPGSQVALPNDPTNLGRSLLLLQKVG------LIKLKDGVGLLPTVLDVVENPKNL 177
Query: 179 SFSQIR-----RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
++ R + A+ + + S + + G + V +V +
Sbjct: 178 KLIELEAPQLPRSLDDQQIALAIINTTYA--SQIGLTPAKDGLFVEDKDSPYVNLIVARE 235
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKL 261
N+ + ++ + S + + K
Sbjct: 236 DNKDAENVKKFVQAYQ-SDEVYDAANKA 262
>gi|218531649|ref|YP_002422465.1| aliphatic sulfonates family ABC transporter periplsmic
ligand-binding protein [Methylobacterium
chloromethanicum CM4]
gi|254562588|ref|YP_003069683.1| alkanesulfonate ABC transporter periplasmic-binding protein
[Methylobacterium extorquens DM4]
gi|218523952|gb|ACK84537.1| aliphatic sulfonates family ABC transporter, periplsmic
ligand-binding protein [Methylobacterium
chloromethanicum CM4]
gi|254269866|emb|CAX25844.1| alkanesulfonate transport protein, periplasmic-binding subunit, ABC
superfamily [Methylobacterium extorquens DM4]
Length = 324
Score = 43.7 bits (101), Expect = 0.040, Method: Composition-based stats.
Identities = 32/277 (11%), Positives = 72/277 (25%), Gaps = 34/277 (12%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILE---EILGYKTNI 59
++ L S++ A A VR + + S LE + LGY+
Sbjct: 16 RLWLALAALIFVSLTLAAHAQE-RTVRIGYQKYGTLVLLKGRGS--LEPKLKALGYRVQW 72
Query: 60 KLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
P +L +D P A + + E + V
Sbjct: 73 SEFPSGPPLMEALNAGAVDFGSAGETP---PIFAQAASDVLAYVAHEPAAPKGEAILVPK 129
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
A + + K + G+ + ++ I +L + +
Sbjct: 130 TSPAQSVADLRG----------KKVALNKGSNVHYLLVRAIEAAGLTLADITPVYLAP-- 177
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+ R ++ W+P+ ++ + + + + + +
Sbjct: 178 --ADARAAFERGAVDAWVIWDPYFAAAEAGGNARVLADGTGLVPNHQ-FYLSSKSFAAEN 234
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRT 275
+ VA E+ +N V +
Sbjct: 235 GPALDAI------VAAVAEVDAWAKDNT---DAVAKE 262
>gi|157693682|ref|YP_001488144.1| ABC transporter ATP-binding protein [Bacillus pumilus SAFR-032]
gi|157682440|gb|ABV63584.1| ABC superfamily ATP binding cassette transporter, binding protein
[Bacillus pumilus SAFR-032]
Length = 273
Score = 43.3 bits (100), Expect = 0.041, Method: Composition-based stats.
Identities = 30/258 (11%), Positives = 68/258 (26%), Gaps = 15/258 (5%)
Query: 1 MYKILAVCLFLTTFSISYAR----DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
M K++ LFL I A +A + A + +L+E GY
Sbjct: 1 MKKLILSALFLAFAGILAACGSSNNASDSKTITVAASKTPHAEILEE-AKPLLKEK-GYD 58
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+K+L+ + + + + ++ + + +
Sbjct: 59 LKVKVLSDYKMYNKALAEK---EVDANFFQHIPYLNEENKSNKDYDLVSAGAVHLEPFGI 115
Query: 117 NDVGFA-----LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
+ + ++ G +D IN ++K
Sbjct: 116 YSKKYKSVKDIPNGGTIIMTNNVAEQGRMLALLQHAGVIKLDPKVDTINATVKNIKENPK 175
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVR 231
+ + + N+ + I + LN E + + VR
Sbjct: 176 NLKFKKIAPELTAKAYENSEGDAVFINVNYAIQNKLNPKNDSIELEQTKNNPYANIVAVR 235
Query: 232 SDYLDKCPNISRLLKNIK 249
+K I L++ +
Sbjct: 236 KG-EEKSDKIKTLMEVLH 252
>gi|120436189|ref|YP_861875.1| OmpA/MotB family outer membrane protein [Gramella forsetii KT0803]
gi|117578339|emb|CAL66808.1| OmpA/MotB family outer membrane protein [Gramella forsetii KT0803]
Length = 620
Score = 43.3 bits (100), Expect = 0.043, Method: Composition-based stats.
Identities = 19/154 (12%), Positives = 47/154 (30%), Gaps = 15/154 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M I ++ L L + S+S + + + A T + ++E Y
Sbjct: 1 MKNIYSLFLILLSCSLSMQAQSGKQKKADRLYKDFAYLEA-TDVYKELIENE--YNVTYN 57
Query: 61 LLAVPVTFRSLKN------------KGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQ 108
+ T+ L++ + + Y+Y + + S + + + L+
Sbjct: 58 SKKLGDTYMMLRSPENAVFYYGDIIEDTTVSSEYYYKYAQALRGVKRYDESRQWLRKYLE 117
Query: 109 GAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKI 142
K + + KS + ++
Sbjct: 118 SGKQSDEIQTMLNKDEYKSKATYKLKSSDFNSEF 151
>gi|254488298|ref|ZP_05101503.1| phosphonate ABC transporter, periplasmic phosphonate binding
protein [Roseobacter sp. GAI101]
gi|214045167|gb|EEB85805.1| phosphonate ABC transporter, periplasmic phosphonate binding
protein [Roseobacter sp. GAI101]
Length = 302
Score = 43.3 bits (100), Expect = 0.044, Method: Composition-based stats.
Identities = 37/207 (17%), Positives = 60/207 (28%), Gaps = 16/207 (7%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIA---ATTAMTSVILEEILGYKT 57
M KI+A+ L T+ S + DA + + R G + + +E+ LG T
Sbjct: 1 MKKIIALALMTTSMSGAAFADAHAISEFRIGILGGENAQDRMNSNECLRSAVEDALGVPT 60
Query: 58 NI-KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ + L ID+ + S + S LV N G+ ++
Sbjct: 61 KLFAPADYNGVIQGLLGGTIDLSLMG-PSSYAAVHIADKDAVSPILVKVNSDGSTGYYSI 119
Query: 117 NDVGFALGIKSYQDIAKYKKEL----GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
GI S + + Y I Q M N + F F
Sbjct: 120 GFARADSGITSLESLQGKVFGFGDPNSTSGYLIPSIEIPQQTGASMENGDYFGEVKF--- 176
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWE 199
Q N ++W
Sbjct: 177 ----TGGHEQTIVAVNNGDVDAGVTWS 199
>gi|313889897|ref|ZP_07823538.1| ABC transporter, solute-binding protein [Streptococcus
pseudoporcinus SPIN 20026]
gi|313121745|gb|EFR44843.1| ABC transporter, solute-binding protein [Streptococcus
pseudoporcinus SPIN 20026]
Length = 344
Score = 43.3 bits (100), Expect = 0.046, Method: Composition-based stats.
Identities = 41/298 (13%), Positives = 87/298 (29%), Gaps = 50/298 (16%)
Query: 1 MYKILAVCLFLTTFSISYAR---------DADSCTPVRFADTGWTDIAATTAMTSVILEE 51
M K L + + A +A + ++ + + EE
Sbjct: 1 MRKKTLTVLMASVALLGLAACGSKAGNKKEAKGSDKLVVYSPN-SEGLINATIPAF--EE 57
Query: 52 ILGYKTNIKLLAVPVTFRSLKNK------GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAE 105
G K + F+ ++++ + Y + + V +
Sbjct: 58 KYGIKVELIQAGTGELFKKVESEASKPVADVVFGGSYTQYAQHPELFEKYTAKDNDKVIK 117
Query: 106 NLQGAKYM-----------LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGN-- 152
+ Q + D+ + IK Y+D+ EL KI +P N +
Sbjct: 118 DYQNTTGYSTPYTLDGSVLIVNPDLTKGMKIKGYKDLLN--PELKGKIATADPANSSSAF 175
Query: 153 ---------QRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPI 203
D + F L++ +S S + + + AV LS+E
Sbjct: 176 AQLTNMLKATGGYDKKAAWDYVKDLFTLVDGKINSSSSNVYKSVADGEMAVGLSYE---- 231
Query: 204 NSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP---NISRLLKNIKFSVALENEM 258
+ + + ++ E SV+ + + P N + + S +N +
Sbjct: 232 DPSVKLLNDGANIKVIYPEEGSVFLPASAAIIKNAPNKSNAKKFID-FIVSKEAQNAL 288
>gi|254425418|ref|ZP_05039136.1| NMT1/THI5 like family [Synechococcus sp. PCC 7335]
gi|196192907|gb|EDX87871.1| NMT1/THI5 like family [Synechococcus sp. PCC 7335]
Length = 356
Score = 43.3 bits (100), Expect = 0.047, Method: Composition-based stats.
Identities = 24/170 (14%), Positives = 46/170 (27%), Gaps = 25/170 (14%)
Query: 113 MLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
LA + + +L K G G G + ++ S L+
Sbjct: 129 FLARMEYSDLKTLTDASADVSTLADLKGKRIGFTAGTGGEVYTMALLKEAGVSPDDVTLM 188
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRS 232
+ + + +WEPH N + + +G + V +
Sbjct: 189 NLRPQEMLA----ALTSGSIDAYNTWEPHISNGQKTLGDKVTQLDTAGIYSETFNIVTTT 244
Query: 233 DYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPD 282
DYLD P ++ M LI ++ + +
Sbjct: 245 DYLDDNPVVAEKF------------MQALID---------AEEWMKANRE 273
>gi|61396533|gb|AAX45973.1| PlpB [Mannheimia glucosida]
Length = 276
Score = 43.3 bits (100), Expect = 0.047, Method: Composition-based stats.
Identities = 27/272 (9%), Positives = 64/272 (23%), Gaps = 24/272 (8%)
Query: 2 YKILAVCLFLTTFSISY----------ARDADSCTPVRFADTGWTDIAATTAMTSVILEE 51
K+L V L + ++ P++ + T + I +E
Sbjct: 4 KKLLGVALVSALALTACKDEKAQAPATTAKTENKAPLKVGVMTGPEAQ-MTEVAVKIAKE 62
Query: 52 ILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAK 111
G + + + F E +K L
Sbjct: 63 KYGLDVELVQFTEYT--------QPNAALHSKDLDANAFQTVPYLEQEVKDRGYKLAIIG 114
Query: 112 YMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
L ++ IK+ ++ + ++
Sbjct: 115 NTLVWPIAAYSKKIKNISELKDGASVAIPNNASNTARALLLLQAHGLLKLKDPKNVFATE 174
Query: 172 IEASELASFSQIRRD----QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
+ E +I + + V L+ + + G + V
Sbjct: 175 NDIIENPKNIKIVQADTSLLTRMLDDVELAVINNTYAGQAGLSPDKDGIIVESKDSPYVN 234
Query: 228 TVVRSDYLDKCPNISRLLKNIKFSVALENEMM 259
VV + P + +K+ + + + E +
Sbjct: 235 LVVSREDNKDDPRLQTFVKSFQ-TEEVFQEAL 265
>gi|15799879|ref|NP_285891.1| DL-methionine transporter substrate-binding subunit [Escherichia
coli O157:H7 EDL933]
gi|15829453|ref|NP_308226.1| DL-methionine transporter substrate-binding subunit [Escherichia
coli O157:H7 str. Sakai]
gi|168752181|ref|ZP_02777203.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Escherichia coli O157:H7 str. EC4113]
gi|168758721|ref|ZP_02783728.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Escherichia coli O157:H7 str. EC4401]
gi|168765277|ref|ZP_02790284.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Escherichia coli O157:H7 str. EC4501]
gi|168769966|ref|ZP_02794973.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Escherichia coli O157:H7 str. EC4486]
gi|168777694|ref|ZP_02802701.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Escherichia coli O157:H7 str. EC4196]
gi|168782928|ref|ZP_02807935.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Escherichia coli O157:H7 str. EC4076]
gi|168789308|ref|ZP_02814315.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Escherichia coli O157:H7 str. EC869]
gi|168802457|ref|ZP_02827464.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Escherichia coli O157:H7 str. EC508]
gi|195939894|ref|ZP_03085276.1| DL-methionine transporter substrate-binding subunit [Escherichia
coli O157:H7 str. EC4024]
gi|208807749|ref|ZP_03250086.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Escherichia coli O157:H7 str. EC4206]
gi|208812328|ref|ZP_03253657.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Escherichia coli O157:H7 str. EC4045]
gi|208818541|ref|ZP_03258861.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Escherichia coli O157:H7 str. EC4042]
gi|209400462|ref|YP_002268806.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Escherichia coli O157:H7 str. EC4115]
gi|217324240|ref|ZP_03440324.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Escherichia coli O157:H7 str. TW14588]
gi|254791330|ref|YP_003076167.1| DL-methionine transporter substrate-binding subunit [Escherichia
coli O157:H7 str. TW14359]
gi|261226952|ref|ZP_05941233.1| D-methionine transport protein (ABC superfamily, peri_bind)
[Escherichia coli O157:H7 str. FRIK2000]
gi|261255356|ref|ZP_05947889.1| D-methionine transport protein (ABC superfamily, peri_bind)
[Escherichia coli O157:H7 str. FRIK966]
gi|291281020|ref|YP_003497838.1| D-methionine-binding lipoprotein metQ precursor [Escherichia coli
O55:H7 str. CB9615]
gi|23396712|sp|Q8X8V9|METQ_ECO57 RecName: Full=D-methionine-binding lipoprotein metQ; Flags:
Precursor
gi|12512928|gb|AAG54499.1|AE005195_8 putative lipoprotein [Escherichia coli O157:H7 str. EDL933]
gi|13359655|dbj|BAB33622.1| putative lipoprotein [Escherichia coli O157:H7 str. Sakai]
gi|187767116|gb|EDU30960.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Escherichia coli O157:H7 str. EC4196]
gi|188013916|gb|EDU52038.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Escherichia coli O157:H7 str. EC4113]
gi|188999583|gb|EDU68569.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Escherichia coli O157:H7 str. EC4076]
gi|189354502|gb|EDU72921.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Escherichia coli O157:H7 str. EC4401]
gi|189361049|gb|EDU79468.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Escherichia coli O157:H7 str. EC4486]
gi|189364923|gb|EDU83339.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Escherichia coli O157:H7 str. EC4501]
gi|189371128|gb|EDU89544.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Escherichia coli O157:H7 str. EC869]
gi|189375545|gb|EDU93961.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Escherichia coli O157:H7 str. EC508]
gi|208727550|gb|EDZ77151.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Escherichia coli O157:H7 str. EC4206]
gi|208733605|gb|EDZ82292.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Escherichia coli O157:H7 str. EC4045]
gi|208738664|gb|EDZ86346.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Escherichia coli O157:H7 str. EC4042]
gi|209161862|gb|ACI39295.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Escherichia coli O157:H7 str. EC4115]
gi|209745594|gb|ACI71104.1| putative lipoprotein [Escherichia coli]
gi|209745596|gb|ACI71105.1| putative lipoprotein [Escherichia coli]
gi|209745598|gb|ACI71106.1| putative lipoprotein [Escherichia coli]
gi|209745600|gb|ACI71107.1| putative lipoprotein [Escherichia coli]
gi|209745602|gb|ACI71108.1| putative lipoprotein [Escherichia coli]
gi|217320461|gb|EEC28885.1| D-methionine ABC transporter, periplasmic D-methionine-binding
lipoprotein [Escherichia coli O157:H7 str. TW14588]
gi|254590730|gb|ACT70091.1| D-methionine transport protein (ABC superfamily, peri_bind)
[Escherichia coli O157:H7 str. TW14359]
gi|290760893|gb|ADD54854.1| D-methionine-binding lipoprotein metQ precursor [Escherichia coli
O55:H7 str. CB9615]
gi|320190276|gb|EFW64926.1| Methionine ABC transporter substrate-binding protein [Escherichia
coli O157:H7 str. EC1212]
gi|320640004|gb|EFX09589.1| DL-methionine transporter substrate-binding subunit [Escherichia
coli O157:H7 str. G5101]
gi|320644774|gb|EFX13818.1| DL-methionine transporter substrate-binding subunit [Escherichia
coli O157:H- str. 493-89]
gi|320652930|gb|EFX21168.1| DL-methionine transporter substrate-binding subunit [Escherichia
coli O157:H- str. H 2687]
gi|320658318|gb|EFX26047.1| DL-methionine transporter substrate-binding subunit [Escherichia
coli O55:H7 str. 3256-97 TW 07815]
gi|320663628|gb|EFX30912.1| DL-methionine transporter substrate-binding subunit [Escherichia
coli O55:H7 str. USDA 5905]
gi|320668941|gb|EFX35736.1| DL-methionine transporter substrate-binding subunit [Escherichia
coli O157:H7 str. LSU-61]
gi|326339747|gb|EGD63555.1| Methionine ABC transporter substrate-binding protein [Escherichia
coli O157:H7 str. 1044]
gi|326345081|gb|EGD68824.1| Methionine ABC transporter substrate-binding protein [Escherichia
coli O157:H7 str. 1125]
Length = 271
Score = 43.3 bits (100), Expect = 0.048, Method: Composition-based stats.
Identities = 25/283 (8%), Positives = 69/283 (24%), Gaps = 24/283 (8%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K A L D P ++ + + + ++ G +
Sbjct: 5 FKTFAAVGALIGSLALVGCGQDEKDPNHIKVGVIVGAEQQV-AEVAQKVAKDKYGLDVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V +L ID P L++ + + A Y +
Sbjct: 64 VTFNDYVLPNEALSKGDIDANAFQHKPYLDQQLKDRGYKLVAVGNTFVYPIAGYSKKIKS 123
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ + + + G ++ + + ++E +
Sbjct: 124 LDELQDGSQVAVPNDPTNLGRSLLLLQKVG------LIKLKDGVGLLPTVLDVVENPKNL 177
Query: 179 SFSQIR-----RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
++ R + A+ + + S + + G + V +V +
Sbjct: 178 KIVELEAPQLPRSLDDAQIALAVINTTYA--SQIGLTPAKNGIFVEDKDSPYVNLIVTRE 235
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
N+ + ++ + E + N +
Sbjct: 236 DNKDAENVKKFVQAYQ--SDEVYEAANKVFNGG-----AVKGW 271
>gi|293364315|ref|ZP_06611041.1| iron ABC superfamily ATP binding cassette transporter, binding
protein [Streptococcus oralis ATCC 35037]
gi|307702719|ref|ZP_07639671.1| extracellular solute-binding protein, family 1 [Streptococcus
oralis ATCC 35037]
gi|291317161|gb|EFE57588.1| iron ABC superfamily ATP binding cassette transporter, binding
protein [Streptococcus oralis ATCC 35037]
gi|307623835|gb|EFO02820.1| extracellular solute-binding protein, family 1 [Streptococcus
oralis ATCC 35037]
Length = 346
Score = 43.3 bits (100), Expect = 0.049, Method: Composition-based stats.
Identities = 36/296 (12%), Positives = 88/296 (29%), Gaps = 45/296 (15%)
Query: 1 MYKILAVC----LFLTTFSISYARDA------DSCTPVRFADTGWTDIAATTAMTSVILE 50
M K L++ +FL S +A D+ + + + + E
Sbjct: 1 MKKTLSLLYFSWIFLLLSGCSSTTEAETSIENDTDKTLVVYSPN-PEDLIEETIPAF--E 57
Query: 51 EILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFI-----------APYLEEGS 99
E G K ++ + F+ + + + + ++
Sbjct: 58 EKYGIKVDLVQASTGELFKKAEAEKEAPVADVIFGGSYALFSSNEKLFEPYTSQENDQII 117
Query: 100 IKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNE--------- 150
+ + Y L V+ + + I Y L K+ G +
Sbjct: 118 PEYQNKTGFYTPYTLDVSVIIANSALTKDIKIEGYNDLLNPKLKGKIATADPSNSSSAFA 177
Query: 151 ------GNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWE--PHP 202
+Q + + F L++ +S S + + + AV L++E
Sbjct: 178 QLTNMLVDQGGYENEQAWTYVKNLFSLVDGKIASSSSNVYKSVADGEMAVGLTYEDPALK 237
Query: 203 INSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEM 258
+ +D + +E + F + + + +++ L S +++E+
Sbjct: 238 LLNDGVDVKVIYPKEGTVFLPGNAAIIKNAKHMENAKKFIDFL----LSQDIQDEL 289
>gi|320169535|gb|EFW46434.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 148
Score = 43.3 bits (100), Expect = 0.049, Method: Composition-based stats.
Identities = 13/100 (13%), Positives = 35/100 (35%), Gaps = 2/100 (2%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYP 85
P+ A + ++ +++EE LG T + F SL D+ + +
Sbjct: 40 PINLAVNNRDSSRTSWSIAKILIEEKLGLPTTTSVYETYEEAFESLSTGTTDLLLEVYSD 99
Query: 86 SLEKFIAPYLEEGS-IKLVAENLQGAKYMLAVNDVGFALG 124
+ + + Y+ + + A+ + + + +
Sbjct: 100 DVPELLQHYVNNLRSVVNAGPSGVVAETGWFIPEYTWEIN 139
>gi|312958361|ref|ZP_07772882.1| taurine ABC transporter, periplasmic binding protein [Pseudomonas
fluorescens WH6]
gi|311287425|gb|EFQ65985.1| taurine ABC transporter, periplasmic binding protein [Pseudomonas
fluorescens WH6]
Length = 325
Score = 43.3 bits (100), Expect = 0.049, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I + W+P + N L E++ FG + +VR D+ +K P
Sbjct: 164 AIIAAWKRGDIDATYVWDPALGVAKENGKVLITSGELAKFGAPTFDAWIVRKDFAEKHPE 223
Query: 241 ISRLLKNIKFS 251
I +
Sbjct: 224 IVTAFAKVTLD 234
>gi|229587820|ref|YP_002869939.1| taurine ABC transporter substrate-binding periplasmic protein
[Pseudomonas fluorescens SBW25]
gi|229359686|emb|CAY46534.1| taurine ABC transport system, substrate-binding periplasmic protein
precursor [Pseudomonas fluorescens SBW25]
Length = 325
Score = 43.3 bits (100), Expect = 0.049, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I + W+P + N L E++ FG + +VR D+ +K P
Sbjct: 164 AIIAAWKRGDIDATYVWDPALGVAKENGKVLITSGELAKFGAPTFDAWIVRKDFAEKHPE 223
Query: 241 ISRLLKNIKFS 251
I +
Sbjct: 224 IVTAFAKVTLD 234
>gi|311280833|ref|YP_003943064.1| lipoprotein, YaeC family [Enterobacter cloacae SCF1]
gi|308750028|gb|ADO49780.1| lipoprotein, YaeC family [Enterobacter cloacae SCF1]
Length = 271
Score = 43.3 bits (100), Expect = 0.050, Method: Composition-based stats.
Identities = 31/286 (10%), Positives = 68/286 (23%), Gaps = 30/286 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K A L D P ++ + + + +E G +
Sbjct: 5 FKTFAAVGALIGSLALVGCGQDEKDPNHIKVGVIVGAEQQV-AEVAQKVAKEKYGLDVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V +L ID+ F + IK L
Sbjct: 64 VTFNDYVLPNEALSKGDIDV---------NAFQHKPYLDQQIKDRGYKLVPVGNTFVYPI 114
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK--------FSLKGFR 170
G++ IKS ++ + + + + +I +
Sbjct: 115 AGYSKKIKSLDELQPGSQVAVPNDPTNLGRSLLLLQKVGLIKLKDDVGLLPTVLDVTENP 174
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
Q+ R + A+ + + S + + G + V +V
Sbjct: 175 KNLKIVELEAPQLPRSLDDAQIALAVINTTYA--SQIGLTPAKDGIFVEDKDSPYVNLIV 232
Query: 231 RSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
+ N+ + ++ + E I N +
Sbjct: 233 AREDNKDAENVKKFVQAYQ--SDEVYEAANKIFNGG-----AVKGW 271
>gi|169627950|ref|YP_001701599.1| fatty oxidation protein FadB [Mycobacterium abscessus ATCC 19977]
gi|169239917|emb|CAM60945.1| Probable fatty oxidation protein FadB [Mycobacterium abscessus]
Length = 719
Score = 43.3 bits (100), Expect = 0.050, Method: Composition-based stats.
Identities = 5/39 (12%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 272 VGRTMLRTHPDLLKNW-LIGVTTFDGQDPSRQLERFMNN 309
+ ++ +P+ ++ W + G G + L + +
Sbjct: 200 AAKAWIKANPEAVQRWDVKGYKIPGGTPATPALAAILPS 238
>gi|254361826|ref|ZP_04977961.1| ABC superfamily ATP binding cassette transporter, binding protein
[Mannheimia haemolytica PHL213]
gi|261491614|ref|ZP_05988197.1| lipoprotein 2 [Mannheimia haemolytica serotype A2 str. BOVINE]
gi|1170787|sp|Q08869|PLPB_PASHA RecName: Full=Outer membrane lipoprotein 2; AltName: Full=PLP2;
Flags: Precursor
gi|349531|gb|AAA25539.1| lipoprotein [Mannheimia haemolytica]
gi|61396501|gb|AAX45949.1| PlpB [Mannheimia haemolytica]
gi|61396509|gb|AAX45955.1| PlpB [Mannheimia haemolytica]
gi|61396513|gb|AAX45958.1| PlpB [Mannheimia haemolytica]
gi|61396517|gb|AAX45961.1| PlpB [Mannheimia haemolytica]
gi|61396525|gb|AAX45967.1| PlpB [Mannheimia haemolytica]
gi|153093361|gb|EDN74357.1| ABC superfamily ATP binding cassette transporter, binding protein
[Mannheimia haemolytica PHL213]
gi|261312740|gb|EEY13860.1| lipoprotein 2 [Mannheimia haemolytica serotype A2 str. BOVINE]
Length = 276
Score = 43.3 bits (100), Expect = 0.051, Method: Composition-based stats.
Identities = 27/272 (9%), Positives = 64/272 (23%), Gaps = 24/272 (8%)
Query: 2 YKILAVCLFLTTFSISY----------ARDADSCTPVRFADTGWTDIAATTAMTSVILEE 51
K+L V L + ++ P++ + T + I +E
Sbjct: 4 KKLLGVALVSALALTACKDEKAQAPATTAKTENKAPLKVGVMTGPEAQ-MTEVAVKIAKE 62
Query: 52 ILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAK 111
G + + + F E +K L
Sbjct: 63 KYGLDVELVQFTEYT--------QPNAALHSKDLDANAFQTVPYLEQEVKDRGYKLAIIG 114
Query: 112 YMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
L ++ IK+ ++ + ++
Sbjct: 115 NTLVWPIAAYSKKIKNISELKDGATVAIPNNASNTARALLLLQAHGLLKLKDPKNVFATE 174
Query: 172 IEASELASFSQIRRD----QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
+ E +I + + V L+ + + G + V
Sbjct: 175 NDIIENPKNIKIVQADTSLLTRMLDDVELAVINNTYAGQAGLSPDKDGIIVESKDSPYVN 234
Query: 228 TVVRSDYLDKCPNISRLLKNIKFSVALENEMM 259
VV + P + +K+ + + + E +
Sbjct: 235 LVVSREDNKDDPRLQTFVKSFQ-TEEVFQEAL 265
>gi|322786225|gb|EFZ12829.1| hypothetical protein SINV_05121 [Solenopsis invicta]
Length = 1230
Score = 43.3 bits (100), Expect = 0.051, Method: Composition-based stats.
Identities = 14/121 (11%), Positives = 33/121 (27%), Gaps = 11/121 (9%)
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPG--------GEEISGFGEASVYTV 229
+Q N V L + P + + G + + +
Sbjct: 158 TQLAQNSSASIGNRSLVILHYTPSSVIPNEQEFNEIDFPHCGTKKGPPDCAYEMNRLTKL 217
Query: 230 VRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNN--KQDRQFVGRTMLRTH-PDLLKN 286
V + + +KF+ + +++ + + V L+ + LK
Sbjct: 218 VWNKLATIAKVAFEAINRVKFNREMYEDLIARRIRAPVNATDEDVACDWLKDNLNYTLKE 277
Query: 287 W 287
W
Sbjct: 278 W 278
>gi|269137909|ref|YP_003294609.1| DL-methionine transporter substrate-binding subunit [Edwardsiella
tarda EIB202]
gi|74474895|dbj|BAE44432.1| antigenic protein Et 28 [Edwardsiella tarda]
gi|267983569|gb|ACY83398.1| DL-methionine transporter substrate-binding subunit [Edwardsiella
tarda EIB202]
gi|304557961|gb|ADM40625.1| Methionine ABC transporter substrate-binding protein [Edwardsiella
tarda FL6-60]
Length = 271
Score = 43.3 bits (100), Expect = 0.051, Method: Composition-based stats.
Identities = 32/283 (11%), Positives = 74/283 (26%), Gaps = 30/283 (10%)
Query: 5 LAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL 62
LA+ L + P ++ + + + ++ G +
Sbjct: 8 LALVGTLLGTLALAGCGQEEKDPNHIKVGVIVGAEQQV-AEVAQKVAKDKYGLNVELVTF 66
Query: 63 AVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
V +L ID F + IK L G+
Sbjct: 67 NDYVLPNEALNKGDIDA---------NAFQHKPYLDQQIKDRGYKLVAVGNTFVYPIAGY 117
Query: 122 ALGIKSYQDIAKYKKEL---GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ IKS ++ + G + ++ + + + E +
Sbjct: 118 SKKIKSLNELQDGAQIAIPNDPTNLGRSLLLLQSVGLIKLKDGIGLLPTVLDITENPKHL 177
Query: 179 SFSQIR-----RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
++ R +N A+ + + S + + G + G V +V +
Sbjct: 178 KLVELEAPQLPRSLDDNQIALAVINTTYA--SQIGLTPAKDGIFVEGKDSPYVNLIVARE 235
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
N+ + ++ + S + N I N +
Sbjct: 236 DNKDAENVKKFVQAYQ-SDEVYNAAN-KIFNGG-----AVKGW 271
>gi|323190402|gb|EFZ75677.1| D-methionine-binding lipoprotein metQ [Escherichia coli RN587/1]
Length = 271
Score = 43.3 bits (100), Expect = 0.051, Method: Composition-based stats.
Identities = 25/283 (8%), Positives = 69/283 (24%), Gaps = 24/283 (8%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K A L D P ++ + + + ++ G +
Sbjct: 5 FKNFAAVGALIGSLALVGCGQDEKDPNHIKVGVIVGAEQQV-AEVAQKVAKDKYGLDVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V +L ID P L++ + + A Y +
Sbjct: 64 VTFNDYVLPNEALSKGDIDANAFQHKPYLDQQLKDRGYKLVAVGNTFVYPIAGYSKKIKS 123
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ + + + G ++ + + ++E +
Sbjct: 124 LDELQDGSQVAVPNDPTNLGRSLLLLQKVG------LIKLKDGVGLLPTVLDVVENPKNL 177
Query: 179 SFSQIR-----RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
++ R + A+ + + S + + G + V +V +
Sbjct: 178 KIVELEAPQLPRSLDDAQIALAVINTTYA--SQIGLTPAKDGIFVEDKESPYVNLIVTRE 235
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
N+ + ++ + E + N +
Sbjct: 236 DNKDAENVKKFVQAYQ--SDEVYEAANKVFNGG-----AVKGW 271
>gi|240140149|ref|YP_002964626.1| alkanesulfonate transport protein, periplasmic-binding subunit, ABC
superfamily [Methylobacterium extorquens AM1]
gi|240010123|gb|ACS41349.1| alkanesulfonate transport protein, periplasmic-binding subunit, ABC
superfamily [Methylobacterium extorquens AM1]
Length = 324
Score = 43.3 bits (100), Expect = 0.051, Method: Composition-based stats.
Identities = 31/277 (11%), Positives = 71/277 (25%), Gaps = 34/277 (12%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILE---EILGYKTNI 59
++ L S++ A A VR + + S LE + LGY+
Sbjct: 16 RLWLALAALIFVSLTLAAHAQE-RTVRIGYQKYGTLVLLKGRGS--LEPKLKALGYRVQW 72
Query: 60 KLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
P +L +D P A + + E + V
Sbjct: 73 SEFPSGPPLMEALNAGAVDFGSAGETP---PIFAQAASDVLAYVAHEPAAPKGEAILVPK 129
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ + K + G+ + ++ I +L + +
Sbjct: 130 SSAVQSVADLRG----------KKVALNKGSNVHYLLVRAIEAAGLTLADITPVYLAP-- 177
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
+ R ++ W+P+ ++ + + + + + +
Sbjct: 178 --ADARAAFERGAVDAWVIWDPYFAAAEAGGNARVLVDGTGLVPNHQ-FYLSSKSFAAEN 234
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRT 275
+ VA E+ +N V +
Sbjct: 235 GPALDAI------VAAVAEVDAWAKDNT---DAVAKE 262
>gi|288961424|ref|YP_003451763.1| sigma-54-dependent transcriptional regulator [Azospirillum sp.
B510]
gi|288913732|dbj|BAI75219.1| sigma-54-dependent transcriptional regulator [Azospirillum sp.
B510]
Length = 741
Score = 43.3 bits (100), Expect = 0.052, Method: Composition-based stats.
Identities = 18/232 (7%), Positives = 53/232 (22%), Gaps = 26/232 (11%)
Query: 19 ARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL---GYKTNIKLLAVPVTFRSLKNKG 75
A+ + + + +E+ L GY+
Sbjct: 447 AQPPAPLVDLPIGYQKFGTSSILK--MRGAVEQRLAAHGYRVTWSEFVSGPQMMDALGSK 504
Query: 76 IDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYK 135
+ + + + V + +
Sbjct: 505 ---EVEFVATGEAPPVFAQAAGVPLVYVG---------YDPPAPNAEALLVRRDSPFRGT 552
Query: 136 KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
+L + + G+ + +L + +L R++ + + + +
Sbjct: 553 ADLRGRTVALHTGSNVHYFLLRALQAYGLTLDDVRIVHMQP----AAALEALLDEMVDAW 608
Query: 196 LSWEP--HPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
W+P + L G + + + + D+ P +L
Sbjct: 609 AIWDPLLSSAQIRDDTRVLTDGNGL---VPNHQFYLANQSFADRNPEAVAIL 657
>gi|323492687|ref|ZP_08097831.1| hypothetical protein VIBR0546_00415 [Vibrio brasiliensis LMG 20546]
gi|323313062|gb|EGA66182.1| hypothetical protein VIBR0546_00415 [Vibrio brasiliensis LMG 20546]
Length = 272
Score = 43.3 bits (100), Expect = 0.052, Method: Composition-based stats.
Identities = 31/273 (11%), Positives = 70/273 (25%), Gaps = 17/273 (6%)
Query: 1 MYKILAVCLFLTTFSIS-YARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYK 56
M + + +S A AD VR A T + + +L E+ GYK
Sbjct: 1 MKALTFTLATASLALVSYSASSADDAPHVRLAT---TTSTYHSGLLDYLLPQFEKDTGYK 57
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
++ + +N +D+ M + + F+ KL+ +
Sbjct: 58 VDVIAAGTGKALKMGENGDVDLVMTHAPKAEANFVEKGYGVLPRKLMYNDFVIVGPHSDP 117
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN----KFSLKGFRLI 172
+G + ++ + I + G +
Sbjct: 118 AKIGEQKDVADVFKSIANMNATFVSRGDDSGTHKKEKGIWQQTKIEPNFGGYRSVGQGMG 177
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEA---SVYTV 229
+A+ Q + + + L ++ S+
Sbjct: 178 PTLNMANEMQGYTMTDRGT-WLAYNNKLDLEVLFQGDKKLFNPYQVILVNPERYPSINYQ 236
Query: 230 VRSDYLDK--CPNISRLLKNIKFSVALENEMMK 260
++ D P +L+ + K +
Sbjct: 237 GAKEFSDWLVNPKGQKLINDFKLNGKQLFVANA 269
>gi|308188381|ref|YP_003932512.1| Taurine-binding periplasmic protein precursor [Pantoea vagans C9-1]
gi|308058891|gb|ADO11063.1| Taurine-binding periplasmic protein precursor [Pantoea vagans C9-1]
Length = 325
Score = 42.9 bits (99), Expect = 0.054, Method: Composition-based stats.
Identities = 12/74 (16%), Positives = 21/74 (28%), Gaps = 1/74 (1%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I + W P + L E+ +G ++ VVR D+ ++ P
Sbjct: 160 AIIAAWQRGDIDGAYVWAPAVNELEKEGKVLTDSAEVGSWGSPTLDVWVVRKDFAEQHPE 219
Query: 241 ISRLLKNIKFSVAL 254
I
Sbjct: 220 IVTAFARSAIDAQQ 233
>gi|61396521|gb|AAX45964.1| PlpB [Mannheimia haemolytica]
Length = 275
Score = 42.9 bits (99), Expect = 0.054, Method: Composition-based stats.
Identities = 28/271 (10%), Positives = 64/271 (23%), Gaps = 23/271 (8%)
Query: 2 YKILAVCLFLTTFSISY---------ARDADSCTPVRFADTGWTDIAATTAMTSVILEEI 52
K+L V L + A+ P++ + T + I +E
Sbjct: 4 KKLLGVALVSALALTACKDEKAQSVSPAKAEKQVPLKVGVMTGPEAQ-MTEVAVKIAKEK 62
Query: 53 LGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKY 112
G + + + F E +K L
Sbjct: 63 YGLYVELVQFTEYT--------QPNAALHSKDLDANAFQTVPYLEQEVKDRGYKLAIIGN 114
Query: 113 MLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
L ++ IK+ ++ + ++
Sbjct: 115 TLVWPIAAYSKKIKNISELKDGATVAIPNNASNTARALLLLQAHGLLKLKDPKNVFATEN 174
Query: 173 EASELASFSQIRRD----QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYT 228
+ E +I + + V L+ + + G + V
Sbjct: 175 DIIENPKNIKIVQADTSLLTRMLDDVELAVINNTYAGQAGLSPDKDGIIVESKDSPYVNL 234
Query: 229 VVRSDYLDKCPNISRLLKNIKFSVALENEMM 259
VV + P + +K+ + + + E +
Sbjct: 235 VVSREDNKDDPRLQTFVKSFQ-TEEVFQEAL 264
>gi|228908674|ref|ZP_04072511.1| aliphatic sulfonates-binding protein [Bacillus thuringiensis IBL
200]
gi|228851015|gb|EEM95832.1| aliphatic sulfonates-binding protein [Bacillus thuringiensis IBL
200]
Length = 328
Score = 42.9 bits (99), Expect = 0.054, Method: Composition-based stats.
Identities = 33/285 (11%), Positives = 76/285 (26%), Gaps = 32/285 (11%)
Query: 2 YKILAVCLFLTTFSISY----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL---G 54
+K+L+ L ++ + A ++ EE G
Sbjct: 5 FKVLSFALAISVCLLGCEKSTASSKKEDVTIQIGIQQGLSPLLLVK-KKGWFEEAFKKEG 63
Query: 55 YKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
K P F ++ + +D P + A ++ +
Sbjct: 64 VKVKWTEFQSGPPYFEAIASNRLDFGEVGNSPVISAQAAGIGF---TEIANTSYARKGTG 120
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+ V +K EL K + G+ + ++ K +I+
Sbjct: 121 ILVQKDSKIASVK----------ELKGKKIAVAKGSSAFNLLYRALDKEGIDSKDVNVIQ 170
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+ + + + W+P LN + + + + + R+
Sbjct: 171 LQPD----EAQPAFESGSVDAWAIWDPFISLHTLNKGAKVIADGETLNASSPEFLITRTK 226
Query: 234 YLDKCPNISRLL-----KNIKFSVALENEMM-KLILNNKQDRQFV 272
+ + P + K + A +E + K D + V
Sbjct: 227 FAKEHPELVEKFLKVYEKARVWQDANLDEAIKVYTSVKKIDAEIV 271
>gi|49479068|ref|YP_036988.1| alkanesulfonates-binding protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|49330624|gb|AAT61270.1| alkanesulfonates-binding protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
Length = 328
Score = 42.9 bits (99), Expect = 0.054, Method: Composition-based stats.
Identities = 28/250 (11%), Positives = 65/250 (26%), Gaps = 26/250 (10%)
Query: 2 YKILAVCLFLTTFSISY----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL---G 54
+K+L+ L ++ F A V+ EE G
Sbjct: 5 FKVLSFTLAISLFLFGCEKSTANSKKEDVTVQIGIQQGLSPLLLAQ-KKGWFEEEFKKEG 63
Query: 55 YKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
K P F ++ + +D P + A ++ +
Sbjct: 64 VKVKWTEFQSGPPYFEAIASNRLDFGEVGNSPVISAQSAGIGF---TEIANTSYARKGTG 120
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+ V +K EL K + G+ + ++ K +I+
Sbjct: 121 ILVQKDSKITSVK----------ELKGKKIAVAKGSSAFNLLYRALDKEGIDAKDVNVIQ 170
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+ + + + W+P +N + + + + R+
Sbjct: 171 LQPD----EAQPAFESGSVDAWAIWDPFISLHTVNKGAKVITDGEILNVSSPEFLIARTK 226
Query: 234 YLDKCPNISR 243
+ + P +
Sbjct: 227 FAKEHPELVE 236
>gi|289623908|ref|ZP_06456862.1| taurine ABC transporter, periplasmic binding protein [Pseudomonas
syringae pv. aesculi str. NCPPB3681]
gi|289651129|ref|ZP_06482472.1| taurine ABC transporter, periplasmic binding protein [Pseudomonas
syringae pv. aesculi str. 2250]
gi|330868940|gb|EGH03649.1| taurine ABC transporter, periplasmic binding protein [Pseudomonas
syringae pv. aesculi str. 0893_23]
Length = 325
Score = 42.9 bits (99), Expect = 0.054, Method: Composition-based stats.
Identities = 35/297 (11%), Positives = 78/297 (26%), Gaps = 34/297 (11%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
K+ LT S++ A A D + + + Y+ K
Sbjct: 1 MKLHFSLRLLTALSLTGATFITQAADFTVAYQTTVDP-------AKVAQADNAYE---KA 50
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+++R N I ++ + L +++A
Sbjct: 51 TDSKISWRKFDNGADVITAIASGDVQIGYLGSSPFTAAATRK---LPVETFLIATQIGAA 107
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
+ ++L K + + G+ +L + + ++ +
Sbjct: 108 EALVARNGSGINSPQDLFGKKVAVPFVSTGHYSLLAALKHWNIDPARVTILNLAPP---- 163
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I + W+P + L E++ G + +VR D+ +K P
Sbjct: 164 AIAAAWKRGDIDATYVWDPALGVAKETGKVLITSGELAKVGAPTFDAWIVRKDFANKHPE 223
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW--LIGVTTFD 295
+ + +QD + +P + L G D
Sbjct: 224 VVSAFAKVTLD---------AYARYRQDPAA----WI-ANPANVDKLTRLSGAKASD 266
>gi|261494973|ref|ZP_05991442.1| lipoprotein 2 [Mannheimia haemolytica serotype A2 str. OVINE]
gi|61396504|gb|AAX45951.1| PlpA [Mannheimia haemolytica]
gi|61396529|gb|AAX45970.1| PlpB [Mannheimia haemolytica]
gi|261309382|gb|EEY10616.1| lipoprotein 2 [Mannheimia haemolytica serotype A2 str. OVINE]
Length = 276
Score = 42.9 bits (99), Expect = 0.054, Method: Composition-based stats.
Identities = 27/272 (9%), Positives = 64/272 (23%), Gaps = 24/272 (8%)
Query: 2 YKILAVCLFLTTFSISY----------ARDADSCTPVRFADTGWTDIAATTAMTSVILEE 51
K+L V L + ++ P++ + T + I +E
Sbjct: 4 KKLLGVALVSALALTACKDEKAQAPATTAKTENKAPLKVGVMTGPEAQ-MTEVVVKIAKE 62
Query: 52 ILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAK 111
G + + + F E +K L
Sbjct: 63 KYGLDVELVQFTEYT--------QPNAALHSKDLDANAFQTVPYLEQEVKDRGYKLAIIG 114
Query: 112 YMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
L ++ IK+ ++ + ++
Sbjct: 115 NTLVWPIAAYSKKIKNISELKDGATVAIPNNASNTARALLLLQAHGLLKLKDPKNVFATE 174
Query: 172 IEASELASFSQIRRD----QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
+ E +I + + V L+ + + G + V
Sbjct: 175 NDIIENPKNIKIVQADTSLLTRMLDDVELAVINNTYAGQAGLSPDKDGIIVESKDSPYVN 234
Query: 228 TVVRSDYLDKCPNISRLLKNIKFSVALENEMM 259
VV + P + +K+ + + + E +
Sbjct: 235 LVVSREDNKDDPRLQTFVKSFQ-TEEVFQEAL 265
>gi|332851419|ref|ZP_08433438.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Acinetobacter baumannii 6013150]
gi|332867311|ref|ZP_08437551.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Acinetobacter baumannii 6013113]
gi|332729989|gb|EGJ61319.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Acinetobacter baumannii 6013150]
gi|332734066|gb|EGJ65200.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Acinetobacter baumannii 6013113]
Length = 261
Score = 42.9 bits (99), Expect = 0.056, Method: Composition-based stats.
Identities = 24/260 (9%), Positives = 51/260 (19%), Gaps = 21/260 (8%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAM--TSVILEEILGYKTN 58
+ + C L+ + V + + T A+ I EE +
Sbjct: 7 IKNLALACSVLSIGLVFNISAKAESVTV------YAAASLTNAINDLEKIYEEQHKVEVK 60
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ ++ ++ + NL G + +L
Sbjct: 61 TSYAGSSTLAKQVEAGAPADIFISADTQWMDYLQNK--KRVAANDRINLLGNRLVLITPK 118
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
K KI + + + N
Sbjct: 119 GQSLNIKLDKAT--DPNKVFTGKICTGDTKSVPVGKYAKQAFTNLGGWNRIEPKLVETED 176
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS---GFGEASVYTVVRS--- 232
+ + V + + S E + + S
Sbjct: 177 VRAAL-NFVARGECQVGIVYATDAAISKDVKVAGIFPENTHSPIIYPVGMIKKNSNSAKF 235
Query: 233 -DYLDKCPNISRLLKNIKFS 251
+L + K FS
Sbjct: 236 YQFLQSN-QAKAVFKKYGFS 254
>gi|315443270|ref|YP_004076149.1| periplasmic glycine betaine/choline-binding (lipo)protein of an ABC
transporter (osmoprotectant binding protein)
[Mycobacterium sp. Spyr1]
gi|315261573|gb|ADT98314.1| periplasmic glycine betaine/choline-binding (lipo)protein of an
ABC-type transport system (osmoprotectant binding
protein) [Mycobacterium sp. Spyr1]
Length = 289
Score = 42.9 bits (99), Expect = 0.056, Method: Composition-based stats.
Identities = 35/284 (12%), Positives = 77/284 (27%), Gaps = 20/284 (7%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
LA CL + + TG + + + L G ++++
Sbjct: 14 LAFCLAAVGIVAGCGGTP-ALPSIPVGTTGEPEAQLVAHLYTAAL-RFYGNPAHVQVADD 71
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
P+ +L + + + G L +F +++ L +A D +
Sbjct: 72 PL--GALDSGEVRVAPGLTGELLARFAPDSAARSDVQVYRTLLSALPEGVAAGDYTTSAE 129
Query: 125 IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR--LIEASELASFSQ 182
K + + + + + + L +A E
Sbjct: 130 DKPAIAVTERTAGEWDGGDVAALARSCPDIAVGAVRSEPRPARVGTCTLPDAREFPDDDA 189
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP--- 239
+ R+ D+ + ++ S +V + R + L++
Sbjct: 190 MFGALRSGRIDAAW---TSTAAPDVPSEVVVLSDKTSLIRAENVVPLYRRNELNESQVLA 246
Query: 240 --NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHP 281
I+ +L S+A + D V L HP
Sbjct: 247 LNEIAGVLD--TGSLADMRRQLA----EGTDPGLVAGQWLEEHP 284
>gi|257877447|ref|ZP_05657100.1| iron ABC transporter [Enterococcus casseliflavus EC20]
gi|257811613|gb|EEV40433.1| iron ABC transporter [Enterococcus casseliflavus EC20]
Length = 347
Score = 42.9 bits (99), Expect = 0.056, Method: Composition-based stats.
Identities = 35/286 (12%), Positives = 85/286 (29%), Gaps = 40/286 (13%)
Query: 4 ILAVCLFLTTFSISYARDADSC-TPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL 62
++ + + + + A S + ++ + + EE G K ++
Sbjct: 15 LVGLAACGNGGTSNSSDTASSGSDTLVIYSPN-SEGLINATIPAF--EERYGIKVDLIQA 71
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIA-----------------PYLEEGSIKLVAE 105
F+ L+++ + + +
Sbjct: 72 GTGELFKKLESEKDAPVADVVFGGSYTQYSENQHLFEEYVSDENDNIEEDYQNQTGFYTP 131
Query: 106 NLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGN-----------QR 154
++ D+ + I+ Y D+ +L KI +P N + Q
Sbjct: 132 YTIDGSVLIVNPDLTEGMTIEGYSDLLN--DDLAGKIATADPANSSSAFAQLTNMLQAQG 189
Query: 155 ILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWE--PHPINSDLNIHYL 212
+ + F LI+ +S S + + + AV LS+E + +D +
Sbjct: 190 GYESQEAWNYVEDLFTLIDGKISSSSSNVYKAVADGEMAVGLSYEDPTVKLLNDGANVEI 249
Query: 213 PGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEM 258
+E + F AS + + ++ + S ++N +
Sbjct: 250 VYPKEGTVFLPASAAIIKNAKNIENAQKFIDFI----ISEDVQNTL 291
>gi|332084460|gb|EGI89655.1| D-methionine-binding lipoprotein metQ domain protein [Shigella
dysenteriae 155-74]
Length = 145
Score = 42.9 bits (99), Expect = 0.060, Method: Composition-based stats.
Identities = 12/125 (9%), Positives = 31/125 (24%), Gaps = 9/125 (7%)
Query: 9 LFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTF 68
+ + + ++ + + + +E G + + +
Sbjct: 1 MLAGILLAGCDQSSSDAKHIKVGVINGAEQDV-AEVAKKVAKEKYGLDVELVGFSGSLLP 59
Query: 69 RSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSY 128
N + F+ + KLVA G++ IK+
Sbjct: 60 NDATN---HGELDANVFQHRPFLEQDNQAHGYKLVAV-----GNTFVFPMAGYSKKIKTV 111
Query: 129 QDIAK 133
I +
Sbjct: 112 AQIKE 116
>gi|325121888|gb|ADY81411.1| taurine transport system substrate-binding protein [Acinetobacter
calcoaceticus PHEA-2]
Length = 346
Score = 42.9 bits (99), Expect = 0.060, Method: Composition-based stats.
Identities = 15/95 (15%), Positives = 32/95 (33%), Gaps = 10/95 (10%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY-TVVRSDYLDKCPN 240
+I WEP + + L +++ +G + VVR D+ +K P+
Sbjct: 185 EISAAWERGDIDAAYVWEPALSKAKASGTVLTDSKQVGEWGAPTYDLWVVRKDFAEKNPD 244
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRT 275
+ +K ++ + QD +
Sbjct: 245 FLKAF--VKTTLEQLEKYN-------QDPAAYVKD 270
>gi|47570099|ref|ZP_00240757.1| sulfonate ABC transporter, periplasmic sulfonate-binding protein,
putative [Bacillus cereus G9241]
gi|47553215|gb|EAL11608.1| sulfonate ABC transporter, periplasmic sulfonate-binding protein,
putative [Bacillus cereus G9241]
Length = 328
Score = 42.9 bits (99), Expect = 0.060, Method: Composition-based stats.
Identities = 31/286 (10%), Positives = 77/286 (26%), Gaps = 31/286 (10%)
Query: 3 KILAVCLFLTTFSISY----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL---GY 55
K+L+ + ++ F A V+ EE G
Sbjct: 6 KVLSFAVAISLFLFGCEKSTASSKKEDITVQIGIQQGLSPLLLAQ-KKGWFEEEFKKEGV 64
Query: 56 KTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
K P F ++ + +D P + A ++ + +
Sbjct: 65 KVKWTEFQSGPPYFEAIASNRLDFGEVGNTPVISAQAAGIEF---TEIANTSYARKGTGI 121
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
V +K EL K + G+ + ++ + K +I+
Sbjct: 122 LVQKDSKITSVK----------ELKGKKIAVAKGSSAFNLLYRALDKEGINAKDVNVIQL 171
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDY 234
+ + + + W+P +N + + + + R+ +
Sbjct: 172 QPD----EAQPAFESGSVDAWAIWDPFISLHTVNKGAKVITDGEQLNVSSPEFLIARTKF 227
Query: 235 LDKCPNISRLL-----KNIKFSVALENEMMKLILNNKQDRQFVGRT 275
+ P + K + +E +K+ + K+ + +
Sbjct: 228 TKEHPELVEKFLKVYEKARVWQDENLDEAIKIYTSAKKIDADIVKE 273
>gi|262278784|ref|ZP_06056569.1| taurine transporter [Acinetobacter calcoaceticus RUH2202]
gi|262259135|gb|EEY77868.1| taurine transporter [Acinetobacter calcoaceticus RUH2202]
Length = 346
Score = 42.9 bits (99), Expect = 0.061, Method: Composition-based stats.
Identities = 19/118 (16%), Positives = 42/118 (35%), Gaps = 16/118 (13%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY-TVVRSDYLDKCPN 240
+I WEP + + L +++ +G + VVR D+ +K P+
Sbjct: 185 EISAAWERGDIDAAYVWEPALSKAKASGTVLTDSKQVGEWGAPTYDLWVVRKDFAEKNPD 244
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
+ +K ++ + QD + + D ++ + +T D +D
Sbjct: 245 FLKSF--VKTTLEQLEKYN-------QDPATYVK-----NADNVEK-IAQLTGSDPKD 287
>gi|212712183|ref|ZP_03320311.1| hypothetical protein PROVALCAL_03265 [Providencia alcalifaciens DSM
30120]
gi|212685230|gb|EEB44758.1| hypothetical protein PROVALCAL_03265 [Providencia alcalifaciens DSM
30120]
Length = 258
Score = 42.9 bits (99), Expect = 0.062, Method: Composition-based stats.
Identities = 28/264 (10%), Positives = 65/264 (24%), Gaps = 17/264 (6%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAM--TSVILEEILGYKTN 58
M K L + T +++ A ++ + + + + T A+ S ++ +
Sbjct: 1 MKKGLISLVAGATLTLTMAGNSFAAEKITV----FAAASLTNALNEISEQYKKETNVEVV 56
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ R ++ F +K L G + +L
Sbjct: 57 ASYASSSTLARQIEQGAPANMFISADQQWMDFAIDKNL--MVKDTRYTLLGNELVLIAPK 114
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
++ + +KK L + + I +
Sbjct: 115 DSKIDKVEINKQT-DWKKLLDGGRLAVGDPDHVPVGIYAKEALTYLGAWETVDPLLARTN 173
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV------VRS 232
+ + + + + S + E + V
Sbjct: 174 NVRSGMALVERQEAPLGIVYGSDAVASQKVKVVGIFPADTHKPVEYPMGIVKDQDNKATR 233
Query: 233 DYLD--KCPNISRLLKNIKFSVAL 254
DY + K P S + K F+
Sbjct: 234 DYYEYLKTPAASEVFKRYGFTPNQ 257
>gi|299770530|ref|YP_003732556.1| taurine ABC transporter, periplasmic binding protein [Acinetobacter
sp. DR1]
gi|298700618|gb|ADI91183.1| taurine ABC transporter, periplasmic binding protein [Acinetobacter
sp. DR1]
Length = 340
Score = 42.9 bits (99), Expect = 0.063, Method: Composition-based stats.
Identities = 15/95 (15%), Positives = 32/95 (33%), Gaps = 10/95 (10%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY-TVVRSDYLDKCPN 240
+I WEP + + L +++ +G + VVR D+ +K P+
Sbjct: 179 EISAAWERGDIDAAYVWEPALSKAKASGTVLTDSKQVGEWGAPTYDLWVVRKDFAEKNPD 238
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRT 275
+ +K ++ + QD +
Sbjct: 239 FLKAF--VKTTLEQLEKYN-------QDPAAYVKD 264
>gi|111023079|ref|YP_706051.1| fatty oxidation complex alpha subunit [Rhodococcus jostii RHA1]
gi|110822609|gb|ABG97893.1| fatty oxidation complex alpha subunit [Rhodococcus jostii RHA1]
Length = 724
Score = 42.9 bits (99), Expect = 0.064, Method: Composition-based stats.
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 272 VGRTMLRTHPDLLKNW-LIGVTTFDGQDPSRQLERFM 307
R + +PD ++ W + G G S L +
Sbjct: 200 AARKWIAENPDAVQPWDVQGYRIPGGTPASPALAANL 236
>gi|323499064|ref|ZP_08104044.1| ABC-type tungstate transport system binding protein [Vibrio
sinaloensis DSM 21326]
gi|323315899|gb|EGA68930.1| ABC-type tungstate transport system binding protein [Vibrio
sinaloensis DSM 21326]
Length = 284
Score = 42.9 bits (99), Expect = 0.064, Method: Composition-based stats.
Identities = 32/276 (11%), Positives = 73/276 (26%), Gaps = 23/276 (8%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTP-VRFADTGWTDIAATTAMTSVIL---EEILGYK 56
M + + +SY+ + P +R A T + + +L E+ GYK
Sbjct: 13 MKALTFTLATASLALVSYSASSADEQPHIRLAT---TTSTYHSGLLDYLLPQFEKDTGYK 69
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
++ + + +N +D+ M + + F+ + +
Sbjct: 70 VDVIAAGTGKSLKMGENGDVDLVMTHAPKAEANFVEK---GYGVLPRKLMYNDFVIVGPH 126
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIY--GIEPGNE-GNQRILDMINNN----KFSLKGF 169
D + + K + A G + G + I + + G
Sbjct: 127 KDPAEITQSQDVAQVFKKIANMNATFISRGDDSGTHKKEKGIWEQSKIEPNFGGYRSVGQ 186
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV 229
+ +A+ Q + + + L ++ T+
Sbjct: 187 GMGPTLNMANEMQGYTMTDRGT-WLAYNNKLDLEILFQGDKKLFNPYQVILVNPERYPTI 245
Query: 230 VRSD---YLDK--CPNISRLLKNIKFSVALENEMMK 260
+ D P +L+ K S
Sbjct: 246 NYQGAKVFSDWLVNPKGQQLINEFKLSGKQLFVANA 281
>gi|332531266|ref|ZP_08407179.1| extracellular solute-binding protein [Hylemonella gracilis ATCC
19624]
gi|332039373|gb|EGI75786.1| extracellular solute-binding protein [Hylemonella gracilis ATCC
19624]
Length = 318
Score = 42.9 bits (99), Expect = 0.065, Method: Composition-based stats.
Identities = 38/257 (14%), Positives = 74/257 (28%), Gaps = 21/257 (8%)
Query: 1 MYK-ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M K ++ + + + T + +GWT A T + + G I
Sbjct: 1 MRKSLVKSAALMASALLVAGAVQAQETKIALGMSGWTGFAPLTLADKAGIFKKNGLDVEI 60
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
K++ +L + I +++ + LAV +
Sbjct: 61 KMIPQKDRHLALAAQAIQ---CAATTVETHVAWNTNGVPIVQIFQMDKSYGADGLAVRND 117
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIE-PGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
K EL K G++ PG + M++ N ++K + + S A
Sbjct: 118 I------------KNIAELKGKTVGVDAPGTAPYFGLAWMLSKNGLTMKDVKTVTLSPQA 165
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
S + +++EP+ N + D+L
Sbjct: 166 S----AQAFVTGQNDAAMTYEPYLSTVRANPAAGKILATTLDYPMVMDTVGCAPDWLKAN 221
Query: 239 PNISRLLKNIKFSVALE 255
P ++ L N F
Sbjct: 222 PKAAQALTNSYFEALEM 238
>gi|260459646|ref|ZP_05807900.1| NMT1/THI5 like domain protein [Mesorhizobium opportunistum WSM2075]
gi|259034448|gb|EEW35705.1| NMT1/THI5 like domain protein [Mesorhizobium opportunistum WSM2075]
Length = 316
Score = 42.9 bits (99), Expect = 0.067, Method: Composition-based stats.
Identities = 36/279 (12%), Positives = 73/279 (26%), Gaps = 23/279 (8%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M +I L T + + + T V +GWT A T L E G +K
Sbjct: 1 MNRIAIFAATL-TLAAGLSAPVMAATSVTIGISGWTGFAPLTLAKQAGLFEKHGLDVTLK 59
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ ++ + + L + + +L +
Sbjct: 60 KVPQASRPLAIASGDLQCAATTVETWLVWNASGVTTKQIFQLDKSYGADGIVVRNDIKTV 119
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
L K+ A G P +N N S K ++
Sbjct: 120 ADLKGKNVASSAP----------GTSPYFMLAWV----LNKNGMSTKDVTVVNLEPD--- 162
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV-RSDYLDKCP 239
+ +++EP I++ + + + TV ++L P
Sbjct: 163 -AAAQAFLAGQNDAAVTYEP-FISAVRDKADQGHILATTLDYPMVLDTVGCTPEFLKANP 220
Query: 240 NISRLLKNIKFSVALENEMMKL--ILNNKQDRQFVGRTM 276
+ ++ L + F + D + +
Sbjct: 221 DAAKALADSYFEALDLIKKDPQRSYEIMGADVKQSAKEF 259
>gi|217960357|ref|YP_002338917.1| putative sulfonate ABC transporter, sulfonate-binding protein
[Bacillus cereus AH187]
gi|229139552|ref|ZP_04268123.1| aliphatic sulfonates-binding protein [Bacillus cereus BDRD-ST26]
gi|217068031|gb|ACJ82281.1| putative sulfonate ABC transporter, sulfonate-binding protein
[Bacillus cereus AH187]
gi|228644099|gb|EEL00360.1| aliphatic sulfonates-binding protein [Bacillus cereus BDRD-ST26]
Length = 328
Score = 42.9 bits (99), Expect = 0.068, Method: Composition-based stats.
Identities = 29/287 (10%), Positives = 76/287 (26%), Gaps = 31/287 (10%)
Query: 2 YKILAVCLFLTTFSISY----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL---G 54
+K+L+ L ++ F A V+ EE G
Sbjct: 5 FKVLSFALAISLFLFGCEKSTASSKKEDVTVQIGIQQGLSPLLLAQ-KKGWFEEEFKKEG 63
Query: 55 YKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
K P F ++ + +D P + A ++ +
Sbjct: 64 VKVKWTEFQSGPPYFEAIASNRLDFGEVGNSPVISAQAAGIEF---TEIANTSYARKGTG 120
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+ V +K + K + G+ + ++ + K +I+
Sbjct: 121 ILVQKDSKITSVKDLKG----------KKIAVAKGSSAFNLLYRALDKEGINAKDVNVIQ 170
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+ + + + W+ +N + + + + R+
Sbjct: 171 LQPD----EAQPAFESGSVDAWAIWDLFISLHTVNKGAKVITDGEQLNVSSPEFLIARTK 226
Query: 234 YLDKCPNISRLL-----KNIKFSVALENEMMKLILNNKQDRQFVGRT 275
+ + P + K + +E +K+ + K+ + +
Sbjct: 227 FAKEHPELVEKFLKVYEKARVWQDENLDEAIKIYTSAKKIDADIVKE 273
>gi|146310399|ref|YP_001175473.1| DL-methionine transporter substrate-binding subunit [Enterobacter
sp. 638]
gi|145317275|gb|ABP59422.1| lipoprotein, YaeC family [Enterobacter sp. 638]
Length = 271
Score = 42.9 bits (99), Expect = 0.068, Method: Composition-based stats.
Identities = 28/282 (9%), Positives = 70/282 (24%), Gaps = 24/282 (8%)
Query: 3 KILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
K A L D P ++ + + + +E G +
Sbjct: 6 KTFAAVGALIGSLALVGCGQDEKDPNHIKVGVIVGAEQQV-AEVAQKVAKEKYGLDVELV 64
Query: 61 LLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
V +L ID+ P L++ I + A Y + +
Sbjct: 65 TFNDYVLPNEALSKGDIDVNAFQHKPYLDQQIKDRGYKLVSVGNTFVYPIAGYSKKIKSL 124
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+ + + G ++ + + + E +
Sbjct: 125 EELQPGSQVAVPNDPTNLGRSLLLLQKVG------LIKLKDGVGLLPTVLDVAENPKNLK 178
Query: 180 FSQIR-----RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDY 234
++ R + A+ + + S + + G + V +V +
Sbjct: 179 IVELEAPQLPRSLDDAQIALAVINTTYA--SQIGLTPAKDGIFVEEKDSPYVNMIVSRED 236
Query: 235 LDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
N+ + ++ + S + E + N +
Sbjct: 237 NKDAENVKKFVQAYQ-SEEVYQEAN-KVFNGG-----AVKGW 271
>gi|324326889|gb|ADY22149.1| sulfonate ABC transporter, sulfonate-binding protein, putative
[Bacillus thuringiensis serovar finitimus YBT-020]
Length = 328
Score = 42.9 bits (99), Expect = 0.068, Method: Composition-based stats.
Identities = 29/286 (10%), Positives = 75/286 (26%), Gaps = 31/286 (10%)
Query: 3 KILAVCLFLTTFSISY----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL---GY 55
K+L+ L ++ F A ++ EE G
Sbjct: 6 KVLSFALAISLFLFGCEKSTASSKKEDVTIQIGIQQGLSPLLLAQ-KKGWFEEEFKKEGV 64
Query: 56 KTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
K P F ++ + +D P + A ++ + +
Sbjct: 65 KVKWTEFQSGPPYFEAIASNRLDFGEVGNSPVISAQAAGIEF---TEIANTSYARKGTGI 121
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
V +K + K + G+ + + + K +I+
Sbjct: 122 LVQKDSKITSVKDLKG----------KKIAVAKGSSAFNLLYRALEKEGINAKDVNVIQL 171
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDY 234
+ + + + W+P +N + + + + R+ +
Sbjct: 172 QPD----EAQPAFESGSVDAWAIWDPFISLHTVNKGAKVITDGEQLNVSSPEFLIARTKF 227
Query: 235 LDKCPNISRLL-----KNIKFSVALENEMMKLILNNKQDRQFVGRT 275
+ P + K + +E +K+ + K+ + +
Sbjct: 228 AKEHPVLVEKFLKVYEKARVWQDENLDEAIKIYTSAKKIDAEIVKE 273
>gi|332885676|gb|EGK05922.1| hypothetical protein HMPREF9456_02186 [Dysgonomonas mossii DSM
22836]
Length = 267
Score = 42.9 bits (99), Expect = 0.069, Method: Composition-based stats.
Identities = 17/137 (12%), Positives = 42/137 (30%), Gaps = 14/137 (10%)
Query: 1 MYKI---LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M KI + +C+ L + + + ++ + + + +E G +
Sbjct: 1 MKKINGLITICISLLLLTSCGNKKNNDPNHIKVGVSSGPE-YVIAEAAKKVAKEKYGLEV 59
Query: 58 NIKLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ + V +L I+ + P LE+ + +I
Sbjct: 60 ELVQFSDYVMPNTALDQGDIEANVFQTKPFLEEQTTNRGYKFAIV---------GNTFVY 110
Query: 117 NDVGFALGIKSYQDIAK 133
++ IKS ++
Sbjct: 111 PMAAYSKKIKSLDELKD 127
>gi|293608379|ref|ZP_06690682.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292828952|gb|EFF87314.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 340
Score = 42.9 bits (99), Expect = 0.069, Method: Composition-based stats.
Identities = 15/95 (15%), Positives = 32/95 (33%), Gaps = 10/95 (10%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY-TVVRSDYLDKCPN 240
+I WEP + + L +++ +G + VVR D+ +K P+
Sbjct: 179 EISAAWERGDIDAAYVWEPALSKAKASGTVLTDSKQVGEWGAPTYDLWVVRKDFAEKNPD 238
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRT 275
+ +K ++ + QD +
Sbjct: 239 FLKAF--VKTTLEQLEKYN-------QDPAAYVKD 264
>gi|156935091|ref|YP_001439007.1| hypothetical protein ESA_02942 [Cronobacter sakazakii ATCC BAA-894]
gi|156533345|gb|ABU78171.1| hypothetical protein ESA_02942 [Cronobacter sakazakii ATCC BAA-894]
Length = 325
Score = 42.9 bits (99), Expect = 0.069, Method: Composition-based stats.
Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 1/67 (1%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I + W P + L ++ +G ++ VVR D+ +K P
Sbjct: 160 AIIAAWQRGDIDGAYVWAPAVNALEKEGTVLTDSSQVGKWGSPTLDVWVVRKDFAEKHPE 219
Query: 241 ISRLLKN 247
+
Sbjct: 220 VVTAFAR 226
>gi|317049862|ref|YP_004117510.1| taurine ABC transporter periplasmic-binding protein [Pantoea sp.
At-9b]
gi|316951479|gb|ADU70954.1| taurine ABC transporter, periplasmic binding protein [Pantoea sp.
At-9b]
Length = 326
Score = 42.5 bits (98), Expect = 0.069, Method: Composition-based stats.
Identities = 11/73 (15%), Positives = 21/73 (28%), Gaps = 1/73 (1%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I + W P + + L ++ +G ++ VVR D+ + P
Sbjct: 162 AIIAAWQRGDIDGAYVWAPAVNELEKDGKVLTDSSQVGKWGAPTLDVWVVRKDFAQQHPE 221
Query: 241 ISRLLKNIKFSVA 253
I
Sbjct: 222 IVTAFARSALDAQ 234
>gi|150015500|ref|YP_001307754.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein
[Clostridium beijerinckii NCIMB 8052]
gi|149901965|gb|ABR32798.1| ABC-type nitrate/sulfonate/bicarbonate transport systems
periplasmic components-like protein [Clostridium
beijerinckii NCIMB 8052]
Length = 329
Score = 42.5 bits (98), Expect = 0.072, Method: Composition-based stats.
Identities = 32/254 (12%), Positives = 74/254 (29%), Gaps = 34/254 (13%)
Query: 1 MY-KILAVCLFLTTFSISYARDA-DSCTPVRFADT-GWTDIAATTAMTSVILEEILGYKT 57
M K + + + + + ++ V+ +T++ A + G K
Sbjct: 1 MKNKFFILTIVILALMFTGCSKSYENDDVVKIGYIGNFTELPLFAA-YENGYFDKEGVKV 59
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+ + +KN ID F + K + +
Sbjct: 60 ELVKINDNEVEEKIKNGNIDAFTC---------------DYKFLKWNNPNINMKVSMGIT 104
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
+ ++ K +I G+ ++++N N + + + +
Sbjct: 105 SGAIEIITSKDSNLQKITDIENKRIGIANQGDGTMAAAINVLNKNNINDNSIKWVYLKDE 164
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPG--------GEEISGFGEASVYTV 229
+ N + W+ + ++++N+ Y G G G + Y
Sbjct: 165 NPTT----AIENGEVDAAVVWDINREDNNINVVYKTGLIDSEKSSGNNHGNHGNSYFYIN 220
Query: 230 ---VRSDYLDKCPN 240
VRS+ DK P
Sbjct: 221 FAGVRSEIADKYPE 234
>gi|239503536|ref|ZP_04662846.1| taurine ABC transporter, periplasmic binding protein [Acinetobacter
baumannii AB900]
Length = 340
Score = 42.5 bits (98), Expect = 0.073, Method: Composition-based stats.
Identities = 15/95 (15%), Positives = 32/95 (33%), Gaps = 10/95 (10%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY-TVVRSDYLDKCPN 240
+I WEP + + L +++ +G + VVR D+ +K P+
Sbjct: 179 EISAAWERGDIDAAYVWEPALSKAKASGTVLTDSKQVGEWGAPTYDLWVVRKDFAEKNPD 238
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRT 275
+ +K ++ + QD +
Sbjct: 239 FLKAF--VKTTLEQLEKYN-------QDPAAYVKD 264
>gi|257465658|ref|ZP_05630029.1| outer membrane lipoprotein 2 precursor [Actinobacillus minor 202]
gi|257451318|gb|EEV25361.1| outer membrane lipoprotein 2 precursor [Actinobacillus minor 202]
Length = 270
Score = 42.5 bits (98), Expect = 0.074, Method: Composition-based stats.
Identities = 32/266 (12%), Positives = 62/266 (23%), Gaps = 18/266 (6%)
Query: 2 YKILAVCLFLTTFSISY----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
KIL + L A A P++ + T + I +E G
Sbjct: 4 KKILGIALISALALTGCKEEKAATAAPAKPLKMGVMTGPEAQ-MTEVAVKIAKEKYGLDV 62
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+ + + F E +K L L
Sbjct: 63 ELVQFTEYT--------QPNAALQAGDLDANAFQTVPYLEQEVKDRGYKLAIIGNTLVWP 114
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG---FRLIEA 174
++ IK+ ++ + +I +IE
Sbjct: 115 IAAYSKKIKNIAELKDGATIALPNNASNTARALLLLQANGLIKLKDPKNVFSTEQDIIEN 174
Query: 175 SELASFSQIRRDQRNNIP-AVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
Q + V L+ + + G + V VV +
Sbjct: 175 PRNIKIVQADTALLTRMLDDVDLAVINNTYAGQAGLSPDKDGIIVESKDSPYVNLVVSRE 234
Query: 234 YLDKCPNISRLLKNIKFSVALENEMM 259
P + LK+ + + + E +
Sbjct: 235 DNKTDPRLQTFLKSFQ-TEEVYQEAL 259
>gi|183983555|ref|YP_001851846.1| hypothetical protein MMAR_3575 [Mycobacterium marinum M]
gi|183176881|gb|ACC41991.1| conserved hypothetical protein [Mycobacterium marinum M]
Length = 295
Score = 42.5 bits (98), Expect = 0.074, Method: Composition-based stats.
Identities = 15/140 (10%), Positives = 36/140 (25%), Gaps = 9/140 (6%)
Query: 143 YGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP 202
+G P L ++ ++ L + V + + P
Sbjct: 13 FGSGPECPTELLCLPLLRA-RYGLTFKEFRVTDAGGPRT--VDALEAGEIQVGVLFTTDP 69
Query: 203 INSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN-ISRLLKNIK--FSVALENEMM 259
+ L + SV ++R + ++ + + + A E+
Sbjct: 70 RLLAGDFVLLED--DRHAQPAESVTPILRDELRAAHGEHLAASIDALSAELTTARLAELN 127
Query: 260 KLILNNKQDRQFVGRTMLRT 279
+ +L V L
Sbjct: 128 RRVLL-GASAAAVAAEFLTK 146
>gi|170724136|ref|YP_001751824.1| taurine ABC transporter periplasmic binding protein [Pseudomonas
putida W619]
gi|169762139|gb|ACA75455.1| taurine ABC transporter, periplasmic binding protein [Pseudomonas
putida W619]
Length = 323
Score = 42.5 bits (98), Expect = 0.074, Method: Composition-based stats.
Identities = 19/117 (16%), Positives = 37/117 (31%), Gaps = 17/117 (14%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I + W+P + N L E++ G + +VR D+ DK P+
Sbjct: 162 AIIAAWKRGDIDATYVWDPALGVAKENGKVLITSGELAEKGAPTFDAWIVRKDFADKHPD 221
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW--LIGVTTFD 295
+ + + + ++D + L + D + L G D
Sbjct: 222 VVKAFAKVTLD---------AYADYRKDP----QAWL-ANKDNVAKLVKLSGAKASD 264
>gi|298489254|ref|ZP_07007271.1| Alkanesulfonates-binding protein [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|298156218|gb|EFH97321.1| Alkanesulfonates-binding protein [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
Length = 311
Score = 42.5 bits (98), Expect = 0.075, Method: Composition-based stats.
Identities = 34/254 (13%), Positives = 70/254 (27%), Gaps = 26/254 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSV--ILEEIL-GYKT 57
M + L + AD +R + T + +LE+ K
Sbjct: 1 MKPFTFIAAILAFSGLLNTAFADELGTLRIGYQK---GSITLVLAKEHGLLEKRFAATKV 57
Query: 58 N-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
I+ A P +L +DI P + +A
Sbjct: 58 KWIEFPAGPQMLEALNIGSLDIASTGDIPPIFAQVAGADL-------------VYIGAEP 104
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ + EL + ++ G+ + +L ++N + K + I +
Sbjct: 105 AKPEAETILVRNESPLHSVAELKGRKVALQKGSSSHNVVLRLLNKAGLTFKDVQPIYLTP 164
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
+ R N + W+P+ + H YT R + +
Sbjct: 165 ----ADARAAFENGSVDAWAIWDPYYSIALNEGHSRLLANGEGLGLSGPFYT-ARRAFAE 219
Query: 237 KCPN-ISRLLKNIK 249
K + ++L +
Sbjct: 220 KNAAFVQQVLDELT 233
>gi|331012095|gb|EGH92151.1| taurine ABC transporter, periplasmic binding protein [Pseudomonas
syringae pv. tabaci ATCC 11528]
Length = 221
Score = 42.5 bits (98), Expect = 0.075, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 32/117 (27%), Gaps = 17/117 (14%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I + W+P + L E++ G + +VR D+ +K P
Sbjct: 60 AIAAAWKRGDIDATYVWDPALGVAKETGKVLITSGELAKVGAPTFDAWIVRKDFANKHPE 119
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW--LIGVTTFD 295
+ + +QD + +P + L G D
Sbjct: 120 VVSAFAKVTLD---------AYARYRQDPAA----WI-ANPANVDKLTRLSGAKASD 162
>gi|330820795|ref|YP_004349657.1| putative aliphatic sulfonates binding protein [Burkholderia
gladioli BSR3]
gi|327372790|gb|AEA64145.1| putative aliphatic sulfonates binding protein [Burkholderia
gladioli BSR3]
Length = 345
Score = 42.5 bits (98), Expect = 0.076, Method: Composition-based stats.
Identities = 27/279 (9%), Positives = 70/279 (25%), Gaps = 35/279 (12%)
Query: 3 KILAVCLFLTTFSISYARDADSC---TPVRFADTGWTDIAAT----TAMTSVILEEILGY 55
++L L + A + + V + + + + LGY
Sbjct: 18 RLLGRSLLALGVGAAVASYSSAALARDTVSIGYQRSSTLFILLKRNGELERRL--GALGY 75
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
+ + + A + ++ A + Y
Sbjct: 76 DVR---------WHEFSSG----LLEAMNSGSVDLNADVADAFALFTQAAHAPLTYYAEE 122
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
+ I +L K + G+ + +L + + +
Sbjct: 123 TSAPSAQAIIVPANSPIHGVADLRGKRVAVAKGSGCHYLLLAALKRAGLAPGDVDIRYLE 182
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYL 235
+ + R ++ W+P + H + G E + + ++
Sbjct: 183 ASDALA----AFRGGNVDAWVIWDPFLAAEQRDDHVRVIADGRDGLAEYNRFYTATDAFV 238
Query: 236 DKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGR 274
++ P+ R + L N+ K + K +
Sbjct: 239 ERHPDALRAV------FELLNQTGKWV---KAHPDEAAK 268
>gi|330806954|ref|YP_004351416.1| taurine ABC transporter periplasmic protein [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|327375062|gb|AEA66412.1| Taurine ABC transporter, periplasmic component [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 325
Score = 42.5 bits (98), Expect = 0.077, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 1/71 (1%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I + W+P + N L E++ FG + +VR D+ K P
Sbjct: 164 AIIAAWKRGDIDATYVWDPALGVAKENGKVLITSAELAKFGAPTFDAWIVRKDFAQKHPE 223
Query: 241 ISRLLKNIKFS 251
I +
Sbjct: 224 IVTAFAKVTLD 234
>gi|157373432|ref|YP_001472032.1| ABC-type nitrate/sulfonate/bicarbonate transport system protein
[Shewanella sediminis HAW-EB3]
gi|157315806|gb|ABV34904.1| ABC-type nitrate/sulfonate/bicarbonate transport system protein
[Shewanella sediminis HAW-EB3]
Length = 320
Score = 42.5 bits (98), Expect = 0.077, Method: Composition-based stats.
Identities = 27/277 (9%), Positives = 69/277 (24%), Gaps = 30/277 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K LA L + + A W E +G +
Sbjct: 3 MIKYLASLLITLMLTACGGEKPQPQ--ITIAINPWPGYELLYLAEKKGFFEKVGINIKLV 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
T + I+ + + ++ + + G +A + +
Sbjct: 61 Q---TATLSDAQRAYINGRVDGFTSTIVEAVQAQEFGGEPLTIALLADYSNGGDVILGSE 117
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
I + K G E + G + + + SL +++ + +
Sbjct: 118 SFQSITDLKG----------KKVGCEVSSLGIYILARALAVSDMSLDDVQIVNMEQGNAH 167
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGG-EEISGFGEASVYTVV-RSDYLDKC 238
+ +++ P+ + + + + TV + +
Sbjct: 168 ----QALAYGQIDAMVTYPPYSFDILNDKKLASHRIFTTAEIPNEILDTVSLSKGVIARN 223
Query: 239 PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRT 275
P K + L+ + +Q + +
Sbjct: 224 P---------KLTSQLQQAWQLAMDYLEQHPEEAVKH 251
>gi|327395529|dbj|BAK12951.1| taurine-binding periplasmic protein precursor TauA [Pantoea
ananatis AJ13355]
Length = 329
Score = 42.5 bits (98), Expect = 0.078, Method: Composition-based stats.
Identities = 31/250 (12%), Positives = 65/250 (26%), Gaps = 23/250 (9%)
Query: 1 MYKILAVC-LFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN- 58
M KI+ + ++ V A + A + G
Sbjct: 1 MGKIMLKGQSTILATVLALLAFQAGAVDVTVAYQTSAEPAKVAQ-ADNTFAKESGATVAW 59
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
K + R+L + + I P E + + G L V
Sbjct: 60 RKFDSGAGVLRALASGDVQIGNIGSSPLAVAATQQLPIE---AFLLASQLGNSEALVVRK 116
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ ++L K + + + +L + + +L+
Sbjct: 117 TIASP------------QDLIGKRIAVPFISTTHYSLLAALKHWGIKPSQVQLVNLQPP- 163
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDK 237
I + W P + + L ++ +G ++ VVR D+ +
Sbjct: 164 ---AIVAAWQRGDIDGAYVWAPAVNALEKDGKVLTDSSQVGRWGSPTLDVWVVRKDFAQQ 220
Query: 238 CPNISRLLKN 247
P+I
Sbjct: 221 HPDIVTAFAR 230
>gi|317485700|ref|ZP_07944571.1| hypothetical protein HMPREF0179_01924 [Bilophila wadsworthia 3_1_6]
gi|316923065|gb|EFV44280.1| hypothetical protein HMPREF0179_01924 [Bilophila wadsworthia 3_1_6]
Length = 359
Score = 42.5 bits (98), Expect = 0.078, Method: Composition-based stats.
Identities = 27/293 (9%), Positives = 75/293 (25%), Gaps = 26/293 (8%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP 65
+C + + A V A G + ++ +G + +
Sbjct: 9 GLCAAVLCVAYVGTAGAAELQKVPTAWMGAQETFPIWYAKQKGWDKEVGLDVELLYFSSG 68
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL-- 123
+ S + + L + + N + + V +
Sbjct: 69 MDALSTL---PAKTWVFGGMGAIPALMGALRHDTYVIANCNDEAMVNAVMVRPDSPIMQT 125
Query: 124 --GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
KSY ++ + + K + + + + + K + + ++ +
Sbjct: 126 KGYNKSYPNVYGTPESVKGKTVLCTTVSSAHFALSSWLKALGLTEKDVTIKNMDQASALA 185
Query: 182 QIRRDQRNNIPAVFLSWEP-HPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
I + W P + + + V ++ DK P
Sbjct: 186 ----AFEYGIGDIVTLWAPLTYVGEKRGWKVASTPHDCYRGLP--IVIVADREFADKNPE 239
Query: 241 I-SRLLKNI-----KFSVALENEMM-----KLILNNKQDR-QFVGRTMLRTHP 281
+ ++ L ++++ + D + + L+ HP
Sbjct: 240 VTAKFLSIYMRAIDMMKNEPMDKLLPEYLRFYVDWAGTDYSKDLAEMDLKNHP 292
>gi|73542405|ref|YP_296925.1| extracellular solute-binding protein [Ralstonia eutropha JMP134]
gi|72119818|gb|AAZ62081.1| extracellular solute-binding protein, family 3 [Ralstonia eutropha
JMP134]
Length = 325
Score = 42.5 bits (98), Expect = 0.079, Method: Composition-based stats.
Identities = 33/241 (13%), Positives = 63/241 (26%), Gaps = 19/241 (7%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
+A L ++ A A + V +GWT A T + + G +IK++
Sbjct: 15 MARASLLAAVAMVGAAHAQTTQ-VTLGMSGWTGFAPLTLADKAGIFKKHGVDVDIKMIPQ 73
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
+L + I + ++L + A L
Sbjct: 74 KDRHLALASGAIQCAATTVETHVAWNANGVPITQIVQLDKSYGADGLAVRADVKSFADLK 133
Query: 125 IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
K+ A G P M+ N +LK + S
Sbjct: 134 GKTIGVDAP----------GTAPYFGLAW----MLKKNGMTLKDVKTTTLSP----QAAA 175
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
+ +++EP+ N + + +L P ++
Sbjct: 176 QAFVAGQNDGAMTYEPYLSTVRQNPDKGKILATTLDYPMVTDTLGCAPKWLKDNPKAAQA 235
Query: 245 L 245
L
Sbjct: 236 L 236
>gi|330891652|gb|EGH24313.1| taurine ABC transporter, periplasmic binding protein [Pseudomonas
syringae pv. mori str. 301020]
Length = 325
Score = 42.5 bits (98), Expect = 0.079, Method: Composition-based stats.
Identities = 36/298 (12%), Positives = 74/298 (24%), Gaps = 36/298 (12%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IK 60
K+ LT S++ A A D A E+ K + K
Sbjct: 1 MKLHFSLRLLTALSLTGATFIAQAADFTVAYQTTIDPAKVAQ-ADNAYEKATDSKISWRK 59
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
++ + + I P E + +A
Sbjct: 60 FDNGADVITAIASGDVQIGYLGSSPFTAAATRKLPVEAFL-------------IATQIGA 106
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ ++L K + + G+ +L + + ++ +
Sbjct: 107 AEALVARNGSGINSPQDLIGKKVAVPFVSTGHYSLLAALKHWNIDPARVTILNLAPP--- 163
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCP 239
I + W+P + L E++ G + +VR D+ +K P
Sbjct: 164 -AIAAAWKRGDIDATYVWDPALGVAKETGKVLITSGELAKVGAPTFDAWIVRKDFANKHP 222
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW--LIGVTTFD 295
+ + +QD + +P + L G D
Sbjct: 223 EVVSAFAKVTLD---------AYARYRQDPAA----WI-ANPANVDKLARLSGAKASD 266
>gi|20094039|ref|NP_613886.1| nitrate/sulfonate/taurine/bicarbonate ABC transporter periplasmic
protein [Methanopyrus kandleri AV19]
gi|19887016|gb|AAM01816.1| Homolog of ABC-type nitrate/sulfonate/taurine/bicarbonate transport
systems, periplasmic component [Methanopyrus kandleri
AV19]
Length = 319
Score = 42.5 bits (98), Expect = 0.079, Method: Composition-based stats.
Identities = 35/280 (12%), Positives = 74/280 (26%), Gaps = 31/280 (11%)
Query: 1 MYKILAVCLFLTTFSISYARD---ADSCTPVRFADTGWT-DIAATTAMTSVILEEILGYK 56
M K++A+ + + + VR A AM + E+ G K
Sbjct: 1 MKKVVALGIVIVAVLGGALGYYYYTTTSNVVRIGYQPSDHSAALFVAMAKKMFEKE-GIK 59
Query: 57 TN-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
+ A P ++L ID+ P++ + + + N +G+ +
Sbjct: 60 VETYEFKAGPPETQALAAGKIDVAYIGCVPAITAYSKGVPIK---IVAGVNQEGS--AIV 114
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
V K EL G+ + + + I
Sbjct: 115 VRKDEAGKIKDIKDLKGKRVAELMK-------GSIQDCMLRTALKRAGLDPDKDVDI--- 164
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIH-YLPGGEEISGFGEASVYTVVRSDY 234
+ F+ EP P + V+R D+
Sbjct: 165 VEMKTADAVNALGAKQIDAFIEPEPGPTMAVKKGFGVRLMDTGKIWSHHQCCVLVMRKDF 224
Query: 235 LDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGR 274
+++ PN+++ + + M + +
Sbjct: 225 IERHPNLAKKVLKVHV-------MATKYVQEH--PDEAAK 255
>gi|302556245|ref|ZP_07308587.1| ABC transporter substrate-binding protein [Streptomyces
viridochromogenes DSM 40736]
gi|302473863|gb|EFL36956.1| ABC transporter substrate-binding protein [Streptomyces
viridochromogenes DSM 40736]
Length = 188
Score = 42.5 bits (98), Expect = 0.080, Method: Composition-based stats.
Identities = 20/142 (14%), Positives = 35/142 (24%), Gaps = 20/142 (14%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPV-----------------RFADTGWTDIAATTAM 44
+ L LF + + A T + +T+ +
Sbjct: 3 RRTLIGGLFAAASVPALSACASGITSLDGQGGSTTGGGSSRGGVTIGTANFTENQVLGYL 62
Query: 45 TSVILEEILGYK--TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKL 102
+ +LE G K L + +LK ID+ Y L ++
Sbjct: 63 YAAVLEAA-GVKTTVRPNLGTREILIPALKGGDIDLLPEYQGALLHYLDPKATATEEGEM 121
Query: 103 VAENLQGAKYMLAVNDVGFALG 124
L + G A
Sbjct: 122 QNALAAALPSGLQILPYGMAED 143
>gi|218186119|gb|EEC68546.1| hypothetical protein OsI_36855 [Oryza sativa Indica Group]
Length = 271
Score = 42.5 bits (98), Expect = 0.080, Method: Composition-based stats.
Identities = 30/286 (10%), Positives = 72/286 (25%), Gaps = 30/286 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K +A L D P ++ + + + +E G +
Sbjct: 5 FKSIATIGALIGTLALAGCGQDEKNPNHIKVGVIVGAEQQV-AEVAQKVAKEKYGLDVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V +L ID+ F + IK L
Sbjct: 64 VTFNDYVLPNEALSKGDIDL---------NAFQHKPYLDQQIKDRGYKLVPVGNTFVYPI 114
Query: 119 VGFALGIKSYQDIAKYKKEL---GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
G++ IKS ++ + + G ++ + + + E
Sbjct: 115 AGYSKKIKSLDELKEGSQIALPNDPTNLGRSLLLLQKVGLIKLKDGVGLLPTVLDVTENP 174
Query: 176 ELASFSQIR-----RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
+ ++ R + A+ + + S + + G + V +V
Sbjct: 175 KNLKLVELEAPQLPRSLDDQQIALAVINTTYA--SQIGLTPAKDGLFVEDKDSPYVNLLV 232
Query: 231 RSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
+ N+ + ++ + + I N +
Sbjct: 233 AREDNKDAENVKKFVQAYQ--SDEVDAAANKIFNGG-----AVKGW 271
>gi|320011942|gb|ADW06792.1| putative ABC transporter substrate-binding protein [Streptomyces
flavogriseus ATCC 33331]
Length = 351
Score = 42.5 bits (98), Expect = 0.081, Method: Composition-based stats.
Identities = 29/306 (9%), Positives = 65/306 (21%), Gaps = 37/306 (12%)
Query: 4 ILAVCLFLTTFSISYARDADSC-------TPVRFADTGWTDIAATTAMTSVILEEILGYK 56
+L L + +R + +LE+ L +
Sbjct: 12 LLVAALGALVVVTACGTGGGGGGDGQGDGRTIRIGYQAFPSGDLIVK-EKGLLEKALPDR 70
Query: 57 TN--IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
T IK + + +D+ P P + V
Sbjct: 71 TIKWIKFDSGASINTAFVAGSVDLAAIGSSPVARGLSEPLNIPYQVTWVLNVAGDN---- 126
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
+ + +L + + + +L ++ L++
Sbjct: 127 -------EALVARDGAGVEGVGDLAGRKVATPFSSTSHYSLLAALDKAGVDASEVDLLDL 179
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYT-VVRSD 233
I W P L E++ G ++ V +
Sbjct: 180 EP----QDIVAAWSRGDIDAAYVWLPTLDELGKTGKTLLSSRELAAAGRPTLDLGVASTA 235
Query: 234 YLDKCPNISRLLKNIK------FSVALENEMMKLILNNKQDRQFVGRT-----MLRTHPD 282
++DK P + + + + + L+
Sbjct: 236 FVDKQPEVIAAWRKAQAQALDLIHDDPPAAAEAVGKQLGISPEDAAAQLEQGIFLKPAEQ 295
Query: 283 LLKNWL 288
WL
Sbjct: 296 ADDKWL 301
>gi|310828332|ref|YP_003960689.1| hypothetical protein ELI_2745 [Eubacterium limosum KIST612]
gi|308740066|gb|ADO37726.1| hypothetical protein ELI_2745 [Eubacterium limosum KIST612]
Length = 334
Score = 42.5 bits (98), Expect = 0.083, Method: Composition-based stats.
Identities = 33/298 (11%), Positives = 71/298 (23%), Gaps = 35/298 (11%)
Query: 1 MYK----ILAVCLFLTTFSISYARDAD-------SCTPVRFADTGWTDIAATTAMTSVIL 49
M K CL + V+ A M + +
Sbjct: 1 MKKKRWLAFVGCLLAVVLMSAGCSTKQVEEEPKPEPQTVKIAALSGPTGMGMAEMIAEGV 60
Query: 50 EEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQG 109
E + + P + G + + G
Sbjct: 61 ELGEQVEPEWTIATAPDQVTAGIINGDYQIAAVPTNLAATLYNKTE--------GKVILG 112
Query: 110 AKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
A L + ++I G +Y G+ + +++ N +
Sbjct: 113 AVNTLGTLSIVADK----SENINSMADLRGKTVYATGQGSTPEYVLNYLLDKNGLTPGTD 168
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFL-SWEPHPINSDLNIHYLPGGEEISGFGEASVY- 227
IE S + + A+ + + + N+ +
Sbjct: 169 VTIEWFGEHSEAAAKLASGEGSIAMLPQPFATATLAKNENLKLAVDMTDAWEKATDGTKL 228
Query: 228 ----TVVRSDYLDKCPN-ISRLLKNIKFSVALEN-----EMMKLILNNKQDRQFVGRT 275
VV ++ +K P + + ++ K SV N ++ D Q + +
Sbjct: 229 EMGCVVVNKEWAEKNPTIVKKFMEAYKTSVETVNVADERAANDVVEAKIMDNQQMAQK 286
>gi|260550613|ref|ZP_05824822.1| taurine transporter [Acinetobacter sp. RUH2624]
gi|260406324|gb|EEW99807.1| taurine transporter [Acinetobacter sp. RUH2624]
Length = 346
Score = 42.5 bits (98), Expect = 0.083, Method: Composition-based stats.
Identities = 13/79 (16%), Positives = 29/79 (36%), Gaps = 3/79 (3%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY-TVVRSDYLDKCPN 240
+I WEP + + L +++ +G + VVR D+ +K P+
Sbjct: 185 EISAAWERGDIDAAYVWEPALSKAKASGTVLTDSKQVGEWGAPTYDLWVVRKDFAEKNPD 244
Query: 241 ISRLLKNIKFSVALENEMM 259
+ +K ++ +
Sbjct: 245 FLKAF--VKTTLEQLEKYN 261
>gi|330820624|ref|YP_004349486.1| ABC transporter substrate binding protein [Burkholderia gladioli
BSR3]
gi|327372619|gb|AEA63974.1| ABC transporter substrate binding protein [Burkholderia gladioli
BSR3]
Length = 351
Score = 42.5 bits (98), Expect = 0.084, Method: Composition-based stats.
Identities = 32/290 (11%), Positives = 75/290 (25%), Gaps = 27/290 (9%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMT--SVILEE-----ILGYKTN 58
+ L A A + +R A+ + + + ++E+ L + +
Sbjct: 23 LLAATLAVAGFGAAAPAHAEGKIRIAEQ-FGIVYLMLNVARDQHLIEQEGKKEGLDIQVD 81
Query: 59 IKLLAVPVTFRS-LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
L+ L + +DI P L + +L Y L N
Sbjct: 82 WVKLSGGAAVNDALLSGAVDIAGAGVGPLLT--VWDRTHGRQNVKGVASLGNLPYYLVSN 139
Query: 118 DVGFA--LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
+ G IA + + ++ +K + A+
Sbjct: 140 NPGVKTIADFTDKDRIAVPAVGVSVQSRVLQYAAARQWGDKSYDRLDKLTQAIPHPDAAA 199
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYL 235
+ + S + N P ++ + + H + ++ G ++ +
Sbjct: 200 AIIANSSVITGHFGNPP-----FQQQELAGNPKAHIVLNSYDVLGGPSSATVLYATEKFR 254
Query: 236 DKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLK 285
D P R + D + +R + +
Sbjct: 255 DANPKTYRAF---------VAALNDAARLIAADPERAADIYIRVNQSKID 295
>gi|113972201|ref|YP_735994.1| extracellular solute-binding protein [Shewanella sp. MR-4]
gi|117922508|ref|YP_871700.1| extracellular solute-binding protein [Shewanella sp. ANA-3]
gi|113886885|gb|ABI40937.1| extracellular solute-binding protein, family 1 [Shewanella sp.
MR-4]
gi|117614840|gb|ABK50294.1| extracellular solute-binding protein, family 1 [Shewanella sp.
ANA-3]
Length = 274
Score = 42.5 bits (98), Expect = 0.084, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 39/96 (40%), Gaps = 9/96 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYKT 57
M +L + + + ++ A+ A+ ++ A T T+ + + +L E GYK
Sbjct: 8 MKSLLGLVVAASMLTVLPAQSAE---VIKLATTTSTEN---SGLLKELLPKFESESGYKV 61
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP 93
+ + + +D+ M + + KF+A
Sbjct: 62 QVIATGTGKALKLGEQGDVDLVMTHAPSAEAKFVAD 97
>gi|325272384|ref|ZP_08138780.1| taurine ABC transporter, periplasmic binding protein [Pseudomonas
sp. TJI-51]
gi|324102479|gb|EGB99929.1| taurine ABC transporter, periplasmic binding protein [Pseudomonas
sp. TJI-51]
Length = 323
Score = 42.5 bits (98), Expect = 0.086, Method: Composition-based stats.
Identities = 27/243 (11%), Positives = 64/243 (26%), Gaps = 20/243 (8%)
Query: 10 FLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFR 69
+++ A + A D A + Y+ K + +R
Sbjct: 9 LFAALTLASASWLAQAADLTVAYQTTVDPAKVAQVDG-------DYE---KASKASIDWR 58
Query: 70 SLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQ 129
N I ++ + + A +
Sbjct: 59 KFDNGADVITAVASGDVQIGYLGSSPLAAAATRKLPV-----ETFLIATQIGAGEALVAR 113
Query: 130 DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRN 189
D ++L K + + G+ +L + +++ + I +
Sbjct: 114 DSINTPQDLVGKKVAVPFVSTGHYSLLAALKTWNIDPSKVQILNLAPP----AIIAAWKR 169
Query: 190 NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKNI 248
W+P + N L E++ G + +VR D+ +K P++ + +
Sbjct: 170 GDIDATYVWDPALGVAKENGKVLITSGELAAKGAPTFDAWIVRKDFAEKHPDVVKAFAKV 229
Query: 249 KFS 251
Sbjct: 230 TLD 232
>gi|291165971|gb|EFE28018.1| hypothetical protein HMPREF0389_01271 [Filifactor alocis ATCC
35896]
Length = 337
Score = 42.5 bits (98), Expect = 0.088, Method: Composition-based stats.
Identities = 40/344 (11%), Positives = 94/344 (27%), Gaps = 66/344 (19%)
Query: 1 MYKILAVCLFLTTFSISYAR------------DADSCTPVRFADTGWTDIAATTAMT--- 45
M K L+V L A ++ A M
Sbjct: 1 MKKKLSVLLATLLMVGGLTACNNTTSNEVQTPPAAEQATIKIAALKGPTSMGMAKMIHDQ 60
Query: 46 SVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAE 105
+ + + L AV + +DI + +
Sbjct: 61 KDLETKAYDIEV---LNAVDEVIPKVATGEVDIAA--------------VPSNVSSALYN 103
Query: 106 NLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFS 165
+G LA+N +G +++ + G IY G + ++ N
Sbjct: 104 KTEGKIVTLAINTLGVLYVVENGDTVQSVADLKGKTIYSSGKGATPEYALNYILKGNGID 163
Query: 166 LKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEAS 225
+ + + ++ N+ + + +P + L +++ E +
Sbjct: 164 --PEKDVTIEYKSEHAECLAALTNDKNGIAVLPQPFVTVAQTKNDALRVALDLTK--EWN 219
Query: 226 VYT----------------VVRSDYLDKCPNISRLL-----KNIKFSVALENEMMKLILN 264
T V + +++++ P + + +I+F+ + +E I
Sbjct: 220 AVTELRSDIKNGTLITGVIVAQKEFVEQNPELVKTFLEDYKNSIEFTNSNVDEAAAFIGE 279
Query: 265 NKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLERFMN 308
+ V + + +T DG + L ++N
Sbjct: 280 ADIVPEPVAKKAIPE---------CNITYIDGAEMKELLSGYLN 314
>gi|114049451|ref|YP_740001.1| extracellular solute-binding protein [Shewanella sp. MR-7]
gi|113890893|gb|ABI44944.1| extracellular solute-binding protein, family 1 [Shewanella sp.
MR-7]
Length = 274
Score = 42.5 bits (98), Expect = 0.088, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 39/96 (40%), Gaps = 9/96 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYKT 57
M +L + + + ++ A+ A+ ++ A T T+ + + +L E GYK
Sbjct: 8 MKSLLGLVVAASMLTVLPAQSAE---VIKLATTTSTEN---SGLLKELLPKFESESGYKV 61
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP 93
+ + + +D+ M + + KF+A
Sbjct: 62 QVIATGTGKALKLGEQGDVDLVMTHAPSAEAKFVAN 97
>gi|291619199|ref|YP_003521941.1| TauA [Pantoea ananatis LMG 20103]
gi|291154229|gb|ADD78813.1| TauA [Pantoea ananatis LMG 20103]
Length = 330
Score = 42.5 bits (98), Expect = 0.089, Method: Composition-based stats.
Identities = 31/250 (12%), Positives = 65/250 (26%), Gaps = 23/250 (9%)
Query: 1 MYKILAVC-LFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN- 58
M KI+ + ++ V A + A + G
Sbjct: 2 MGKIMLKGQSTILATVLALLAFQAGAVDVTVAYQTSAEPAKVAQ-ADNTFAKESGATVAW 60
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
K + R+L + + I P E + + G L V
Sbjct: 61 RKFDSGAGVLRALASGDVQIGNIGSSPLAVAATQQLPIE---AFLLASQLGNSEALVVRK 117
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ ++L K + + + +L + + +L+
Sbjct: 118 TIASP------------QDLIGKRIAVPFISTTHYSLLAALKHWGIKPSQVQLVNLQPP- 164
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDK 237
I + W P + + L ++ +G ++ VVR D+ +
Sbjct: 165 ---AIVAAWQRGDIDGAYVWAPAVNALEKDGKVLTDSSQVGRWGSPTLDVWVVRKDFAQQ 221
Query: 238 CPNISRLLKN 247
P+I
Sbjct: 222 HPDIVTAFAR 231
>gi|186681122|ref|YP_001864318.1| aliphatic sulfonate ABC transporter periplasmic ligand-binding
protein [Nostoc punctiforme PCC 73102]
gi|186463574|gb|ACC79375.1| aliphatic sulfonates family ABC transporter, periplsmic
ligand-binding protein [Nostoc punctiforme PCC 73102]
Length = 372
Score = 42.1 bits (97), Expect = 0.091, Method: Composition-based stats.
Identities = 34/288 (11%), Positives = 67/288 (23%), Gaps = 52/288 (18%)
Query: 15 SISYARDADSCTPV-RFADTGWTDIAATTAMTSVILEEIL---GYKTN-IKLLAVPVTFR 69
+ S + A S V RF +LE+ L G I+ A P
Sbjct: 68 ATSVSNSASSKATVLRFGYQK--SNILLRN--KGVLEKRLSPNGISVEWIEFPAGPQLLE 123
Query: 70 SLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQ 129
++ ID P A + A + V + +
Sbjct: 124 AMNVGSIDFGHVGESP---PIFAQAAGASLTYVAGIASSPAGSAILVPQNSSIKKLTDLK 180
Query: 130 DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRN 189
K + G + ++ + + R
Sbjct: 181 G----------KKVAFQKGFSAHLLLVQALEKAGLKYTDIEPKYLPP----ADARAAFVK 226
Query: 190 NIPAVFLSWEPHPINSD--LNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKN 247
++ W+P + L G I+ G + T ++ + P + +
Sbjct: 227 GSIDAWVIWDPFYAAAQEATKARVLIDGTGINKQGGYYLGT---RKFVTENPRTVKAV-- 281
Query: 248 IKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFD 295
+ + + H + + L V D
Sbjct: 282 ----LEEIQSL---------------EEWFKQHREEVAQTLSSVLAID 310
>gi|13471316|ref|NP_102885.1| hypothetical protein mll1256 [Mesorhizobium loti MAFF303099]
gi|14022061|dbj|BAB48671.1| mll1256 [Mesorhizobium loti MAFF303099]
Length = 316
Score = 42.1 bits (97), Expect = 0.091, Method: Composition-based stats.
Identities = 38/279 (13%), Positives = 75/279 (26%), Gaps = 23/279 (8%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M +I AV TF+ + + T V +GWT A T L E G +K
Sbjct: 1 MNRI-AVFAATLTFAAGLSAPVMAATSVTIGISGWTGFAPLTLAKQAGLFEKHGLDVTLK 59
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ ++ + + L + + +L +
Sbjct: 60 KVPQASRPLAIASGDLQCAATTVETWLVWNASGVTTKQIFQLDKSYGADGIVVRNDIKTV 119
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
L K+ A G P +N N S K ++
Sbjct: 120 ADLKGKNVASSAP----------GTSPYFLLAWV----LNKNGMSTKDVTVVNLEPD--- 162
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV-RSDYLDKCP 239
+ +++EP I++ + + + TV ++L P
Sbjct: 163 -AAAQAFLAGQNDAAVTYEP-FISAVRDKADQGHILATTLDYPMVLDTVGCTPEFLKANP 220
Query: 240 NISRLLKNIKFSVALENEMMKLILNN--KQDRQFVGRTM 276
+ ++ L + F + D + +
Sbjct: 221 DAAKALADSYFEALDLIKKDPQKSYEIMGADVKQSAKEF 259
>gi|301594985|ref|ZP_07239993.1| taurine ABC transporter, periplasmic binding protein [Acinetobacter
baumannii AB059]
Length = 299
Score = 42.1 bits (97), Expect = 0.092, Method: Composition-based stats.
Identities = 14/95 (14%), Positives = 32/95 (33%), Gaps = 10/95 (10%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY-TVVRSDYLDKCPN 240
+I WEP + + L +++ +G + VVR D+ +K P+
Sbjct: 138 EISAAWERGDIDAAYVWEPALSKAKASGTVLTDSKQVGEWGAPTYDLWVVRKDFAEKNPD 197
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRT 275
+ ++ ++ + QD +
Sbjct: 198 FLKAF--VQTTLEQLEKYN-------QDPAAYVKD 223
>gi|126652008|ref|ZP_01724197.1| predicted xylanase/chitin deacetylase [Bacillus sp. B14905]
gi|126591098|gb|EAZ85208.1| predicted xylanase/chitin deacetylase [Bacillus sp. B14905]
Length = 464
Score = 42.1 bits (97), Expect = 0.092, Method: Composition-based stats.
Identities = 26/242 (10%), Positives = 71/242 (29%), Gaps = 11/242 (4%)
Query: 43 AMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLE-EGSIK 101
+T+ I EE LGYK +++ + M + ++ +
Sbjct: 120 YLTNQIFEEHLGYKPKYVRSRSGDITDNMRLAAAALDMNAVIGLSINPLDRKMQGAQELV 179
Query: 102 LVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINN 161
++ +N I + +A+ +E I + + +
Sbjct: 180 DYIGKYIDRGSIIHLNTYINPAIIDTIPLLAQLAEEHDYTITTLSDVLDNRYLTKSLEEI 239
Query: 162 NKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
+ L + + + + F W D+ + + F
Sbjct: 240 AGYDAIKPNLNYENIEPHLYYRKETSKKEMAITFDDWAHEQQVKDVLEVLKKYNIKSTFF 299
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHP 281
++ S +K P +++L+ ++ + + + K + + +++ H
Sbjct: 300 -------LIGSGV-EKNPQLAKLI--LEEGHEVASHSYYHLDVTKMTPEEIQDDLVKAHK 349
Query: 282 DL 283
L
Sbjct: 350 AL 351
>gi|229103521|ref|ZP_04234203.1| aliphatic sulfonates-binding protein [Bacillus cereus Rock3-28]
gi|228680017|gb|EEL34212.1| aliphatic sulfonates-binding protein [Bacillus cereus Rock3-28]
Length = 328
Score = 42.1 bits (97), Expect = 0.095, Method: Composition-based stats.
Identities = 26/243 (10%), Positives = 62/243 (25%), Gaps = 22/243 (9%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL---GYKTNIKL 61
LA+ LFL A ++ EE G K
Sbjct: 12 LAISLFLFGCEKGTASSKKEDVTIQIGIQQGLSPLLLAQ-KKGWFEETFKNEGVKVKWTE 70
Query: 62 LAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
P F ++ + +D P + A ++ + + V
Sbjct: 71 FQSGPPYFEAIASNRLDFGEVGNSPVISAQAAGIGF---TEIANTSYARKGTGILVQKDS 127
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+K + K + G+ + ++ K +I+
Sbjct: 128 KITSVKDLKG----------KKIAVAKGSSAFNLLYRALDKEGIDAKDVNVIQLQPD--- 174
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ + + + W+P +N + + + + + R+ + + P
Sbjct: 175 -EAQPAFESGSVDAWAIWDPFISLHTVNKGAKVIADGETLNVSSPEFLIARTKFAKEHPE 233
Query: 241 ISR 243
+
Sbjct: 234 LVE 236
>gi|260427084|ref|ZP_05781063.1| trap dicarboxylate transporter, dctp subunit [Citreicella sp.
SE45]
gi|260421576|gb|EEX14827.1| trap dicarboxylate transporter, dctp subunit [Citreicella sp.
SE45]
Length = 336
Score = 42.1 bits (97), Expect = 0.095, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 20/68 (29%), Gaps = 5/68 (7%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADT---GWTDIA--ATTAMTSVILEEILGY 55
M I L +T S A A + +R A WT A + I+E
Sbjct: 1 MRSITKSLLAVTALCGSLAATAGAAQTIRVAHVDPDDWTGSKKGAAAQIFKNIVEGESDM 60
Query: 56 KTNIKLLA 63
I
Sbjct: 61 TVEIFPAG 68
>gi|325124009|gb|ADY83532.1| ABC transporter, substrate-binding protein, aliphatic sulfonate
[Acinetobacter calcoaceticus PHEA-2]
Length = 327
Score = 42.1 bits (97), Expect = 0.098, Method: Composition-based stats.
Identities = 27/276 (9%), Positives = 78/276 (28%), Gaps = 31/276 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSV--ILEEIL-GYKT 57
+ ++ V + T + + +R + + A+ + E+ K
Sbjct: 16 IKRLSVVTVLGLTIAAPAWAIDPTVKELRIG---FQKSSINFAIAKQQKLFEQEFPNAKV 72
Query: 58 NIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
P +L +D+ + P A + + E + + V
Sbjct: 73 TWNEFPAGPQILEALAVGSLDVGVTGDTP---PVYAQAAGKPLYYIAYEAAKPLASAILV 129
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
K K+L K ++ G+ + ++ + + I +
Sbjct: 130 PK----------NSQLKQLKDLKGKRIALQKGSSSHYLLVQAVRKAGLNWSDITPIWLTP 179
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
+ R + + W+P+ ++ L + + + +++
Sbjct: 180 ----ADARAAFQKGAVDAWAIWDPYFASAQLEDQARVLASGKGLSPNYT-FYLAAPNFVK 234
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
+ P L + N+ K + +++ +
Sbjct: 235 QHPKSVSGL------IKQINQADKWVQSHQAETATA 264
>gi|300776922|ref|ZP_07086780.1| ABC superfamily ATP binding cassette transporter, binding protein
[Chryseobacterium gleum ATCC 35910]
gi|300502432|gb|EFK33572.1| ABC superfamily ATP binding cassette transporter, binding protein
[Chryseobacterium gleum ATCC 35910]
Length = 269
Score = 42.1 bits (97), Expect = 0.099, Method: Composition-based stats.
Identities = 18/136 (13%), Positives = 37/136 (27%), Gaps = 13/136 (9%)
Query: 1 MY--KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
M KI ++ + + D +R T + + + ++ +
Sbjct: 1 MKRIKIFSLVAAGILLFSACSGRKDDPNFIRVGITYGPEQEI-AEVAKKVAKDRYNLEVE 59
Query: 59 IKLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+ V +L N ID P L + NL
Sbjct: 60 LIPFNDYVVPNEALTNGDIDANAFQHIPYLTEQSKQR---------GYNLVPVGNTFVYP 110
Query: 118 DVGFALGIKSYQDIAK 133
V ++ IK+ ++
Sbjct: 111 IVAYSKKIKNISELQD 126
>gi|126641488|ref|YP_001084472.1| taurine ABC transporter periplasmic taurine-binding protein
[Acinetobacter baumannii ATCC 17978]
Length = 298
Score = 42.1 bits (97), Expect = 0.10, Method: Composition-based stats.
Identities = 14/95 (14%), Positives = 32/95 (33%), Gaps = 10/95 (10%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY-TVVRSDYLDKCPN 240
+I WEP + + L +++ +G + VVR D+ +K P+
Sbjct: 137 EISAAWERGDIDAAYVWEPALSKAKASGTVLTDSKQVGEWGAPTYDLWVVRKDFAEKNPD 196
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRT 275
+ ++ ++ + QD +
Sbjct: 197 FLKAF--VQTTLEQLEKYN-------QDPAAYVKD 222
>gi|104779500|ref|YP_605998.1| taurine ABC transporter periplasmic taurine-binding protein
[Pseudomonas entomophila L48]
gi|95108487|emb|CAK13181.1| taurine ABC transporter, periplasmic taurine-binding protein
[Pseudomonas entomophila L48]
Length = 323
Score = 42.1 bits (97), Expect = 0.10, Method: Composition-based stats.
Identities = 35/289 (12%), Positives = 74/289 (25%), Gaps = 36/289 (12%)
Query: 10 FLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFR 69
+++ A + A D A + T K + +R
Sbjct: 9 LFAALTLASASWLAQAADLTVAYQTTVDPAKVAQVDG----------TYEKDSKASIDWR 58
Query: 70 SLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQ 129
N I ++ + + A +
Sbjct: 59 KFDNGADVITAVASGDVQIGYLGSSPLAAAATRKLPV-----ETFLIATQIGAGEALVAR 113
Query: 130 DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRN 189
D K ++L K + + G+ +L + +++ + I +
Sbjct: 114 DSIKTPQDLIGKKVAVPFVSTGHYSLLAALKAWNIEPSKVQILNLTPP----AIIAAWKR 169
Query: 190 NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKNI 248
W+P + N L E++ G + +VR D+ K P I + +
Sbjct: 170 GDIDATYVWDPALGVAKENGKVLITSGELAEKGAPTFDAWIVRKDFAAKHPEIVKSFAKV 229
Query: 249 KFSVALENEMMKLILNNKQDRQFVGRTML--RTHPDLLKNWLIGVTTFD 295
+ ++D + L + + L L G D
Sbjct: 230 TLD---------AYADYRKDP----QAWLADKDNVAKLVK-LSGAKPAD 264
>gi|310779102|ref|YP_003967435.1| extracellular solute-binding protein [Ilyobacter polytropus DSM
2926]
gi|309748425|gb|ADO83087.1| extracellular solute-binding protein [Ilyobacter polytropus DSM
2926]
Length = 269
Score = 42.1 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 19/109 (17%), Positives = 39/109 (35%), Gaps = 6/109 (5%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVI--LEEILGYKTN 58
+ + L + L S+ A S + A T T + + M +I E GYK
Sbjct: 4 IKRSLLILLIGVLCSVGVF--AKSNKDIVLATT--TSVRDSGLMDYLIPSFESETGYKVK 59
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL 107
+ + + ++ D+ + + PS KF+ + ++
Sbjct: 60 LIAVGTGKALQMGRDGEADVLLVHAKPSELKFMKNGHGKERREVFHNYF 108
>gi|300781482|ref|ZP_07091336.1| conserved hypothetical protein [Corynebacterium genitalium ATCC
33030]
gi|300533189|gb|EFK54250.1| conserved hypothetical protein [Corynebacterium genitalium ATCC
33030]
Length = 286
Score = 42.1 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 26/284 (9%), Positives = 63/284 (22%), Gaps = 27/284 (9%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRF-ADTGWTDIAATTAMTSVILE---EILGYKT 57
K+ L + T + D PV AD + + ++E +G
Sbjct: 4 RKLAVNVLAVATALTLSSCAQDGSEPVVIAADPSDPEQWVLAEIYRQVIELDGRPVGI-V 62
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
++L L++ ++ + +E + ++ N + A
Sbjct: 63 GVELATASDKLEMLQSGEANLGVFCSGTLVEGENPGEEAKLRAQIATANEEDLDIQHATY 122
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
D + + + + G N + +
Sbjct: 123 DAAAGTLPGDFMTLDPSPAQGCEPE--DDGGALQNPESTRGVEPRRGGNAKPEDDIPEGQ 180
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDK 237
Q P +E ++ V + D+
Sbjct: 181 PPEGQPTDA------------PPTDALPTNAPPAEASEQETL---PRNIMPVFKVGLFDR 225
Query: 238 CPNISRLLKN--IKFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
I + + S +++ D +
Sbjct: 226 G--IRQAMHKATRALSTEDLQRLVERTKAEG-DPSRAVNDWMME 266
>gi|332855400|ref|ZP_08435856.1| taurine ABC transporter, periplasmic binding protein [Acinetobacter
baumannii 6013150]
gi|332867254|ref|ZP_08437504.1| taurine ABC transporter, periplasmic binding protein [Acinetobacter
baumannii 6013113]
gi|193077099|gb|ABO11870.2| taurine ABC transporter periplasmic taurine-binding protein
[Acinetobacter baumannii ATCC 17978]
gi|332727490|gb|EGJ58917.1| taurine ABC transporter, periplasmic binding protein [Acinetobacter
baumannii 6013150]
gi|332734087|gb|EGJ65220.1| taurine ABC transporter, periplasmic binding protein [Acinetobacter
baumannii 6013113]
Length = 340
Score = 42.1 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 14/95 (14%), Positives = 32/95 (33%), Gaps = 10/95 (10%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY-TVVRSDYLDKCPN 240
+I WEP + + L +++ +G + VVR D+ +K P+
Sbjct: 179 EISAAWERGDIDAAYVWEPALSKAKASGTVLTDSKQVGEWGAPTYDLWVVRKDFAEKNPD 238
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRT 275
+ ++ ++ + QD +
Sbjct: 239 FLKAF--VQTTLEQLEKYN-------QDPAAYVKD 264
>gi|184157801|ref|YP_001846140.1| taurine ABC transporter periplasmic protein [Acinetobacter
baumannii ACICU]
gi|332876489|ref|ZP_08444256.1| taurine ABC transporter, periplasmic binding protein [Acinetobacter
baumannii 6014059]
gi|183209395|gb|ACC56793.1| ABC-type taurine transport system, periplasmic component
[Acinetobacter baumannii ACICU]
gi|332735347|gb|EGJ66407.1| taurine ABC transporter, periplasmic binding protein [Acinetobacter
baumannii 6014059]
Length = 340
Score = 42.1 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 14/95 (14%), Positives = 32/95 (33%), Gaps = 10/95 (10%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY-TVVRSDYLDKCPN 240
+I WEP + + L +++ +G + VVR D+ +K P+
Sbjct: 179 EISAAWERGDIDAAYVWEPALSKAKASGTVLTDSKQVGEWGAPTYDLWVVRKDFAEKNPD 238
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRT 275
+ ++ ++ + QD +
Sbjct: 239 FLKAF--VQTTLEQLEKYN-------QDPAAYVKD 264
>gi|322508116|gb|ADX03570.1| ABC-type taurine transport system, periplasmic component
[Acinetobacter baumannii 1656-2]
gi|323517690|gb|ADX92071.1| taurine ABC transporter periplasmic substrate-binding protein
[Acinetobacter baumannii TCDC-AB0715]
Length = 346
Score = 42.1 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 14/95 (14%), Positives = 32/95 (33%), Gaps = 10/95 (10%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY-TVVRSDYLDKCPN 240
+I WEP + + L +++ +G + VVR D+ +K P+
Sbjct: 185 EISAAWERGDIDAAYVWEPALSKAKASGTVLTDSKQVGEWGAPTYDLWVVRKDFAEKNPD 244
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRT 275
+ ++ ++ + QD +
Sbjct: 245 FLKAF--VQTTLEQLEKYN-------QDPAAYVKD 270
>gi|169796269|ref|YP_001714062.1| taurine ABC transporter periplasmic substrate-binding protein
[Acinetobacter baumannii AYE]
gi|213156996|ref|YP_002319041.1| taurine ABC transporter, periplasmic binding protein [Acinetobacter
baumannii AB0057]
gi|215483724|ref|YP_002325947.1| taurine ABC transporter, periplasmic binding protein [Acinetobacter
baumannii AB307-0294]
gi|301345495|ref|ZP_07226236.1| taurine ABC transporter, periplasmic binding protein [Acinetobacter
baumannii AB056]
gi|169149196|emb|CAM87076.1| taurine transport protein (ABC superfamily, peri_bind)
[Acinetobacter baumannii AYE]
gi|213056156|gb|ACJ41058.1| taurine ABC transporter, periplasmic binding protein [Acinetobacter
baumannii AB0057]
gi|213986137|gb|ACJ56436.1| taurine ABC transporter, periplasmic binding protein [Acinetobacter
baumannii AB307-0294]
Length = 346
Score = 42.1 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 14/95 (14%), Positives = 32/95 (33%), Gaps = 10/95 (10%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY-TVVRSDYLDKCPN 240
+I WEP + + L +++ +G + VVR D+ +K P+
Sbjct: 185 EISAAWERGDIDAAYVWEPALSKAKASGTVLTDSKQVGEWGAPTYDLWVVRKDFAEKNPD 244
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRT 275
+ ++ ++ + QD +
Sbjct: 245 FLKAF--VQTTLEQLEKYN-------QDPAAYVKD 270
>gi|118467957|ref|YP_885624.1| ABC transporter substrate-binding protein [Mycobacterium smegmatis
str. MC2 155]
gi|118169244|gb|ABK70140.1| ABC transporter substrate-binding protein [Mycobacterium smegmatis
str. MC2 155]
Length = 485
Score = 41.7 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 26/245 (10%), Positives = 65/245 (26%), Gaps = 23/245 (9%)
Query: 26 TPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL------LAVPVTFRSLKNKGIDIF 79
P + G+ T +L + ++ +K V ++ +
Sbjct: 39 EPTVVVNVGYQSKTINTVNAGTLLRDRGDFEAELKQIGAETGTKYRVVWQDFASGAPLTA 98
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
+ Y + + A M+A+ + + +
Sbjct: 99 QMIATHVDIGSMGDYPLLTNGSKTRKYDDAATEMVAITGYNLRGSLNQVVVPSDSSAQKL 158
Query: 140 AKIYGIEP----GNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVF 195
+ G + G+ G+ + N +++
Sbjct: 159 EDLTGKKVSTSLGSAGDGMFSSALKGNGIDKNAVQIVNQDPSVG----ASAIDGRQVDAL 214
Query: 196 LSWEPHPINSDLNIHYLPGGEEISGFGEASVYT----VVRSDYLDKCPNI-SRLLKNIKF 250
+ P + Y G + G+ +V T VVR + D+ P + + L+ ++
Sbjct: 215 AQFVP----WPQLVIYRNQGRLLYDGGDNNVPTFHGVVVRRQFADQRPEVMAAFLRAMRS 270
Query: 251 SVALE 255
+
Sbjct: 271 TTDAI 275
>gi|111018597|ref|YP_701569.1| ABC transporter permease [Rhodococcus jostii RHA1]
gi|110818127|gb|ABG93411.1| probable ABC transporter, permease component [Rhodococcus jostii
RHA1]
Length = 342
Score = 41.7 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 29/282 (10%), Positives = 67/282 (23%), Gaps = 35/282 (12%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILE---EILGYKTNIKLL 62
V + + A D+ S +RFA WT T + E G +
Sbjct: 15 IVLVSALSLLTGCAGDSQSGDTIRFA-LDWTPNTNHTGLFVAQQEGWFADAGLDVQVLPY 73
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
+ + + + + A + + G +AV
Sbjct: 74 NDTSPDTLVDAGNAEFGVSFQSSATFSKAAGAQTTSVMAPLQHWATG----IAVKADRAD 129
Query: 123 LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ ++L KIY +G + + +I N+ + + +
Sbjct: 130 IT---------RPRDLDGKIYAGFADPDGEETLKQIIRNDGGKGEFTTVTLG------TS 174
Query: 183 IRRDQRNNIPAV---FLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+ F WE + ++ ++ P
Sbjct: 175 AYEAVYSGTADFTVSFFGWEGIEAEHQGTPMRYFHYTDYGFPDAYALVIEGNEQWMADHP 234
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHP 281
+R + + + ++ +P
Sbjct: 235 EQARKF---------VQALQRGYQFAADRPDEAAQILIDANP 267
>gi|51597290|ref|YP_071481.1| DL-methionine transporter substrate-binding subunit [Yersinia
pseudotuberculosis IP 32953]
gi|170023343|ref|YP_001719848.1| DL-methionine transporter substrate-binding subunit [Yersinia
pseudotuberculosis YPIII]
gi|186896395|ref|YP_001873507.1| DL-methionine transporter substrate-binding subunit [Yersinia
pseudotuberculosis PB1/+]
gi|51590572|emb|CAH22213.1| possible ABC transporter, periplasmic solute binding protein
[Yersinia pseudotuberculosis IP 32953]
gi|169749877|gb|ACA67395.1| lipoprotein, YaeC family [Yersinia pseudotuberculosis YPIII]
gi|186699421|gb|ACC90050.1| lipoprotein, YaeC family [Yersinia pseudotuberculosis PB1/+]
Length = 271
Score = 41.7 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 25/268 (9%), Positives = 70/268 (26%), Gaps = 18/268 (6%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K +A L P ++ + + + +E G +
Sbjct: 5 FKSIAAISALIGTLALVGCGPTEKAPNHIKVGVIVGAEQQV-AEVAQKVAKEKYGLDVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V +L ID+ P L++ I + + A Y +
Sbjct: 64 VTFNDYVLPNEALSKGDIDLNAFQHKPYLDQQIKDRGYKLVSVGNSFVYPIAGYSKKIKS 123
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ + + + ++ + + ++E +
Sbjct: 124 LDELQPGSQVALPNDPTNLGRSLLLL------QSVGLIKLKDGVGLLPTVLDVVENPKNL 177
Query: 179 SFSQIR-----RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
++ R + A+ + + S + + G + V +V +
Sbjct: 178 KLVELEAPQLPRSLDDQQIALAIINTTYA--SQIGLTPAKDGLFVENKESPYVNLIVARE 235
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKL 261
N+ + ++ + S + + K
Sbjct: 236 DNKDAENVKKFVQAYQ-SDEVYDAANKA 262
>gi|332669886|ref|YP_004452894.1| glycine betaine ABC transporter substrate-binding protein
[Cellulomonas fimi ATCC 484]
gi|332338924|gb|AEE45507.1| Substrate-binding region of ABC-type glycine betaine transport
system [Cellulomonas fimi ATCC 484]
Length = 334
Score = 41.7 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 19/205 (9%), Positives = 48/205 (23%), Gaps = 34/205 (16%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTF-RSLKNKGIDIFMGYWYP 85
+ +++ + +L GY+ ++ + T+ +L + + Y
Sbjct: 138 SLVVGAANFSESVTLAEIYGEVLRSA-GYQVEVRTIGNRDTYLPALVDGTLSTVPEYAAT 196
Query: 86 -----------------------SLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
+ P E+ + + A + + AV
Sbjct: 197 LADFLNASVNGPDAPSVSTDDVDETVAALTPLAEQSGLVVGAPSAAQDQNAFAVTQAFAD 256
Query: 123 LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL-DMINNNKFSLKGFRLIEASELASFS 181
++ + G + P + + F+ F
Sbjct: 257 EH--DVTTLSDLAEACGGLVLAGPPECPERPFCQPGLEETYGLEIAEFK------SYDFG 308
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSD 206
I R A+ L +
Sbjct: 309 LIGAAVRQGDAAIGLVLSSDGSLAT 333
>gi|262281436|ref|ZP_06059217.1| ABC-type nitrate/sulfonate/bicarbonate transport system protein
[Acinetobacter calcoaceticus RUH2202]
gi|262257262|gb|EEY75999.1| ABC-type nitrate/sulfonate/bicarbonate transport system protein
[Acinetobacter calcoaceticus RUH2202]
Length = 327
Score = 41.7 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 30/275 (10%), Positives = 78/275 (28%), Gaps = 31/275 (11%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSV--ILEEIL-GYKTN 58
+I AV + T + + +R + + A+ + E+ K
Sbjct: 17 KRISAVTVLGLTIAAPAWAIDPTVKELRIG---FQKSSINFAIAKQQKLFEQEFPNAKIT 73
Query: 59 IKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
P +L +D+ + P A + + E + + V
Sbjct: 74 WNEFPAGPQILEALAVGSLDVGVTGDTP---PVYAQAAGKPLYYIAYEAAKPLASAILVP 130
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
K K+L K ++ G+ + ++ + + I +
Sbjct: 131 K----------NSQLKQLKDLKGKRIALQKGSSSHYLLVQAVRKAGLNWSDITPIWLTP- 179
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDK 237
+ R + + W+P+ ++ L + + + D++ +
Sbjct: 180 ---ADARAAFQKGAVDAWAIWDPYFASAQLEDQARVLASGKGLSPNYT-FYLAAPDFVKQ 235
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
P L + N+ K + +++ +
Sbjct: 236 HPKAVSGL------IKQINQADKWVQSHQAETASA 264
>gi|127514717|ref|YP_001095914.1| ABC-type nitrate/sulfonate/bicarbonate transport system protein
[Shewanella loihica PV-4]
gi|126640012|gb|ABO25655.1| ABC-type nitrate/sulfonate/bicarbonate transport system protein
[Shewanella loihica PV-4]
Length = 320
Score = 41.7 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 22/257 (8%), Positives = 67/257 (26%), Gaps = 30/257 (11%)
Query: 18 YARDADSCTPVRFADTGWTDIAATTAMTSV-ILEEILGYKTNIKLLAVPVTFRSLKNKGI 76
P+ A W + + +G + ++ + +
Sbjct: 20 GCGPKKVEEPITIAMNPWPGYELL-YLAKQKGFFQQVGANIELVQVST---LSDAQRAYL 75
Query: 77 DIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKK 136
++ + ++ + I G + + + +
Sbjct: 76 TGYVDGFASTMIEAIQVAPLGGKPIKIVLLADYSDGGDVIIAPDAFEN----------MQ 125
Query: 137 ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFL 196
L + G E + G + + +K ++ ++I + A +
Sbjct: 126 ALRGETIGCEVSSLGIFVLERALRQHKMNIDDVKVINVEQG----AAASALAIGKIAAMV 181
Query: 197 SWEPHPINSDLNIHYLPGGEEISGFGEASVYTV-VRSDYLDKCPNISRLLKNIKFSVALE 255
++ P+ + + Y E + T+ + S L + P + ++
Sbjct: 182 TYPPYSVEIQSSGAYRQLFSTK-EIPEEVLDTLSISSSVLAEHPQLVEQIRR-------- 232
Query: 256 NEMMKLILNNKQDRQFV 272
+ +QD +
Sbjct: 233 -AWQLAMDYMQQDPEEA 248
>gi|330467231|ref|YP_004404974.1| putative ABC transporter substrate-binding protein [Verrucosispora
maris AB-18-032]
gi|328810202|gb|AEB44374.1| putative ABC transporter substrate-binding protein [Verrucosispora
maris AB-18-032]
Length = 340
Score = 41.7 bits (96), Expect = 0.13, Method: Composition-based stats.
Identities = 36/282 (12%), Positives = 75/282 (26%), Gaps = 33/282 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSC-----TPVRFADTGWTDIAATTAMTSVILEEIL-G 54
M K L + ++ + A S +R A + +LE L
Sbjct: 1 MRKTLGLLAAVSLLLSACGDGAASGGDPGRKTIRIAYQAFPSGDLIVK-NQRLLENALPD 59
Query: 55 YKTN-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
Y+ K + + +DI P AP + V +
Sbjct: 60 YQITWTKFDSGASINTAFVAGSVDIAAIGSSPVARGLSAPLNIPYQVAFVLDVAGDN--- 116
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+ L K G + + +L ++ +++
Sbjct: 117 --------EALVARNGAGVTDITGLRGKKVGTPFASTAHYSLLAALDRAGVKESELTIVD 168
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYT-VVRS 232
I+ SW P L E++ G+ ++ VV +
Sbjct: 169 LEP----QDIQAAWTRGDLDAAYSWLPSLDELRKTGTVLITSRELATAGKPTLDLGVVAT 224
Query: 233 DYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGR 274
D+++ P + +++ + LI + D +
Sbjct: 225 DFVEAHPAAVDAWRK------AQSQALNLIHD---DPAAAAK 257
>gi|197284494|ref|YP_002150366.1| molybdate transporter periplasmic protein [Proteus mirabilis
HI4320]
gi|227356673|ref|ZP_03841059.1| molybdate ABC superfamily ATP binding cassette transporter,
substrate-binding protein [Proteus mirabilis ATCC 29906]
gi|194681981|emb|CAR41425.1| molybdate ABC transporter, substrate-binding protein [Proteus
mirabilis HI4320]
gi|227163181|gb|EEI48112.1| molybdate ABC superfamily ATP binding cassette transporter,
substrate-binding protein [Proteus mirabilis ATCC 29906]
Length = 256
Score = 41.7 bits (96), Expect = 0.13, Method: Composition-based stats.
Identities = 28/260 (10%), Positives = 62/260 (23%), Gaps = 15/260 (5%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVR-FADTGWTDIAATTAMTSVILEEILGYKTNI 59
M K+ L S + + + + FA T A +++ ++
Sbjct: 1 MKKLSGKLLAGAIISFALVSQSMASEKITVFAAASLT--NALNEISAQY-KQEKQADVVA 57
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ R ++ ++ + L G +L
Sbjct: 58 SYASSSTLARQIEQGAPANLFISADQQWMDYVINKNL--MVTDSRHTLLGNDLVLIAPKD 115
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+ K+K L + + I + E + +
Sbjct: 116 SKLNNVV-INKDTKWKSLLNGGKLAVGDPDHVPVGIYAKESLEYLGAWDVVSPEMARTNN 174
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV------VRSD 233
+ + + + + SD + E + V D
Sbjct: 175 VRSGMALVERDEAPLGIVYGSDAVASDKVKVVGVFPTDSHKPVEYPMAVVKGQDNKAVRD 234
Query: 234 YLD--KCPNISRLLKNIKFS 251
+ D K P + + K FS
Sbjct: 235 FYDYLKTPQAAEIFKKYGFS 254
>gi|313905099|ref|ZP_07838468.1| Substrate-binding region of ABC-type glycine betaine transport
system [Eubacterium cellulosolvens 6]
gi|313470002|gb|EFR65335.1| Substrate-binding region of ABC-type glycine betaine transport
system [Eubacterium cellulosolvens 6]
Length = 307
Score = 41.7 bits (96), Expect = 0.13, Method: Composition-based stats.
Identities = 41/323 (12%), Positives = 93/323 (28%), Gaps = 42/323 (13%)
Query: 1 MYKILAVCLFLTTFS----ISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
M + L V L +A+ V+ A T A LE+ K
Sbjct: 1 MKRFLGVALAALLALSAAACGSKAEANQAETVKIAYLPITHSLAVLEEAKQ-LEDSSDVK 59
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ + L + + +E + E +K VA + ++
Sbjct: 60 VELVKYGS---WPELLDALNAGKVDGASVLIELAMKSKAEGVGLKAVALGHRDGNVIVVS 116
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
ND+ A +K +++ + DM+ N ++ ++E +
Sbjct: 117 NDIADAKALKGKTIAIPHRQSSHFILV------------NDMLKENGLTIDDVNIVELAP 164
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
S + + + Y V T ++D
Sbjct: 165 TEMPSALAAGTIDGYCVAEPFGAMGVSIGAGKVLYESEELWDDSVCCGLVLT---DSFID 221
Query: 237 KCPN-ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLK---NWLI--- 289
K P + K + + + K + + + + L ++L W+
Sbjct: 222 KKPETAKTFVDAYKKAGSDLS---------KDEAKSIAKEYLNQKDEVLDLSLKWISYDD 272
Query: 290 -GVTTFDGQDPSRQLERF--MNN 309
+T +D + +++ + ++N
Sbjct: 273 LEITEEMYEDLTEKVKSYGLLDN 295
>gi|33594810|ref|NP_882453.1| periplasmic solute-binding protein [Bordetella parapertussis 12822]
gi|33564886|emb|CAE39831.1| periplasmic solute-binding protein [Bordetella parapertussis]
Length = 333
Score = 41.7 bits (96), Expect = 0.13, Method: Composition-based stats.
Identities = 32/255 (12%), Positives = 70/255 (27%), Gaps = 23/255 (9%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL 62
K +A+ ++ A VR+ + W L GY K
Sbjct: 10 KGMAISAAALALPVAGRSWAAKAEAVRYGGSAWLGH------YPAWLAIQAGY---FKAE 60
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
+ V + S + A + + + ++ V +
Sbjct: 61 NLEVGWESFGTTSARVSALLSGNIDMAVTAAPAALAVMSRGSCHFA----IIGVPENFGR 116
Query: 123 LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ + ++L K G+ + + +L++++ + +
Sbjct: 117 VEGLIVRSQVARLEDLKGKKVGVTFASSAHLLVLNLLDQAGLKAGKDVTVLNVPAP---E 173
Query: 183 IRRDQRNNIPAVFLSWEPHP--INSDLNIHYLPGGEEISGFGEASVYT-----VVRSDYL 235
+ ++ +W P I + + L S + E V V R +L
Sbjct: 174 LPAAFQSGQIDAAAAWTPQFNAIRAMPDAKVLVDDTSFSLYKEYGVTPGPDVLVARRAFL 233
Query: 236 DKCPNISRLLKNIKF 250
DK P + F
Sbjct: 234 DKNPEAVKRFLKAYF 248
>gi|260596730|ref|YP_003209301.1| taurine-binding periplasmic protein [Cronobacter turicensis z3032]
gi|260215907|emb|CBA28469.1| Taurine-binding periplasmic protein [Cronobacter turicensis z3032]
Length = 325
Score = 41.7 bits (96), Expect = 0.13, Method: Composition-based stats.
Identities = 11/67 (16%), Positives = 22/67 (32%), Gaps = 1/67 (1%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I + W P + L ++ +G ++ VVR D+ +K P+
Sbjct: 160 AIIAAWQRGDIDGAYVWAPAVNALEKEGTVLTDSSQVGKWGSPTLDVWVVRKDFAEKHPD 219
Query: 241 ISRLLKN 247
+
Sbjct: 220 VVTAFAR 226
>gi|320536390|ref|ZP_08036430.1| flagellar filament outer layer protein [Treponema phagedenis F0421]
gi|320146755|gb|EFW38331.1| flagellar filament outer layer protein [Treponema phagedenis F0421]
Length = 251
Score = 41.7 bits (96), Expect = 0.14, Method: Composition-based stats.
Identities = 32/288 (11%), Positives = 66/288 (22%), Gaps = 49/288 (17%)
Query: 1 MYKILAVCLFLTTFSIS-------YARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL 53
M KI+ VCL +S A + + + AD + + + E+ L
Sbjct: 1 MKKIIIVCLLTVAVLVSGFAQEEQSASEGQDLSTIDAADP--------SKIGNFSAEQRL 52
Query: 54 GYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
+ ++ T+ + + G + P EE ++L E + GAK
Sbjct: 53 K-EVSVDKFETEGTWNVSMSSDEGVIQGRLFDGNPMNKKPIPEEEGLELADEKVFGAKIS 111
Query: 114 LAVNDV-----GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
A + + + Y L
Sbjct: 112 FYRRGYNSFEITAAKALPVEGITKTVSVWVVGRSYAHNLNLIVEDYWGQRFELYVGKLNF 171
Query: 169 FRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYT 228
+ R+ I + H + + +G+ +Y
Sbjct: 172 SGWKLMTVAVPPQHADG--RSGIVQKDYHYGNHLGLKIVGFRVDCDPWDA--YGKYYIYF 227
Query: 229 VVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
+ L + +D +
Sbjct: 228 ------------------------DDLRAVTDLYEIDARDPDDMADNW 251
>gi|229489996|ref|ZP_04383849.1| ABC transporter substrate-binding protein [Rhodococcus erythropolis
SK121]
gi|229323097|gb|EEN88865.1| ABC transporter substrate-binding protein [Rhodococcus erythropolis
SK121]
Length = 342
Score = 41.7 bits (96), Expect = 0.14, Method: Composition-based stats.
Identities = 30/280 (10%), Positives = 67/280 (23%), Gaps = 41/280 (14%)
Query: 11 LTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILE---EILGYKTNIKLLAVPVT 67
T + + S +RFA WT T + + E E G +I
Sbjct: 20 FTVLTGCASDTGSSDGTIRFA-LDWTPNTNHTGLYVALQEGYFEDAGLDVSILPYNNTSP 78
Query: 68 FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKS 127
+ + + + + V LQ + V +
Sbjct: 79 DTLVDAGN----AEFGISTQSQATFARAAGAATTSVIAPLQHRATGIGVKADRADIT--- 131
Query: 128 YQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQ 187
++ K Y + + +I N+ + + +
Sbjct: 132 ------RPRDFDGKTYAGFGDPGEVETLQQIIRNDGGTGNFTTVTLG------TSAYEAV 179
Query: 188 RNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE------ASVYTVVRSDYLDKCPNI 241
+ +S+ L + + S+ +L P+
Sbjct: 180 YSGQADFTVSY---FAWEGLEAERNGTPMRYFQYTDYGFPDAYSIVINGNQQWLKDHPD- 235
Query: 242 SRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHP 281
+ KF A++ N + ++ +P
Sbjct: 236 ----EARKFVKAVQRGYQTAADN----PDRAAQDLIDANP 267
>gi|148265902|ref|YP_001232608.1| ABC-type nitrate/sulfonate/bicarbonate transport systems
periplasmic components-like protein [Geobacter
uraniireducens Rf4]
gi|146399402|gb|ABQ28035.1| ABC-type nitrate/sulfonate/bicarbonate transport systems
periplasmic components-like protein [Geobacter
uraniireducens Rf4]
Length = 374
Score = 41.7 bits (96), Expect = 0.14, Method: Composition-based stats.
Identities = 31/272 (11%), Positives = 70/272 (25%), Gaps = 38/272 (13%)
Query: 1 MYKILAVCLFLTTFSISYA---RDADSC--TPVRFAD------TGWTDIAATTAMTSVIL 49
M K+L+ + +++ + +R + +L
Sbjct: 1 MKKLLSSLFIVLLMVVAFGPTVAFSAEKYPKVIRIGSSGGAYGKPFISGTLGIIHAKGLL 60
Query: 50 EEIL---GYKTNIKL--LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA 104
EE G K P + N ID +P++ + + L +
Sbjct: 61 EEEFKKEGIKFEWNFFKGQGPACNEAFANGNIDFSENGSFPAVIG--KAAGLKTKVILGS 118
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN-- 162
+GA+ M+ + K K+ + E + + N+
Sbjct: 119 GPSRGAQIMI------PRDSKITTVQQLKGKRVGVIRGTNTEYTFLKALELHGLSENDLV 172
Query: 163 --KFSLKGFRLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
A++ + R+ + V S P ++
Sbjct: 173 RLNLQATDTEAALATKDVDAGAVGIRIRDTGVAKVLYSGNPDIK--------YIAPKKAF 224
Query: 220 GFGEASVYTV-VRSDYLDKCPNISRLLKNIKF 250
V V V + + P++ + +
Sbjct: 225 PESSGPVSAVYVTEKFAKEYPDVVKRFVKVYL 256
>gi|254823056|ref|ZP_05228057.1| LpqZ [Mycobacterium intracellulare ATCC 13950]
Length = 290
Score = 41.7 bits (96), Expect = 0.14, Method: Composition-based stats.
Identities = 29/279 (10%), Positives = 73/279 (26%), Gaps = 16/279 (5%)
Query: 11 LTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRS 70
++ + D + V + A + L G+ + P
Sbjct: 17 VSGCATDTGGDPRARAEVVVGSRSDAESALLAGIYVAAL-RSYGFGARFQPTTDPKA--E 73
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD 130
L + I + + L++ + + +A D A K
Sbjct: 74 LDSGAITVVPAFTGRVLQRLQPSATAMSDKDVYRAMIAALPEGIAAGDYTTAAEDKPVLL 133
Query: 131 IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFS------LKGFRLIEASELASFSQIR 184
+++ + + + D++ + RL + E + +
Sbjct: 134 VSRATAKAWGGSDVSADLSTLPRHCADLVLGTVAGHRAPSAIGPCRLPDPREFPDGTTMF 193
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
+ + +W + + +V + R + L + ++
Sbjct: 194 AAVASGR--LTAAWTTTADPGVPADLVALADTKPTLIRAENVVPLYRRNALSERQVLA-- 249
Query: 245 LKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRTHP 281
+ + A +M + + D Q V L HP
Sbjct: 250 INEVAGVLDTAALVDMRRQVRA-GADPQAVATGWLAEHP 287
>gi|153947261|ref|YP_001400025.1| DL-methionine transporter substrate-binding subunit [Yersinia
pseudotuberculosis IP 31758]
gi|152958756|gb|ABS46217.1| D-methionine ABC transporter, periplasmic D-methionine-binding
protein [Yersinia pseudotuberculosis IP 31758]
Length = 271
Score = 41.7 bits (96), Expect = 0.14, Method: Composition-based stats.
Identities = 25/268 (9%), Positives = 70/268 (26%), Gaps = 18/268 (6%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K +A L P ++ + + + +E G +
Sbjct: 5 FKSIAAISALIGTLALVGCGPTEKAPNHIKVGVIVGAEQQV-AEVAQKVAKEKYGLDVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V +L ID+ P L++ I + + A Y +
Sbjct: 64 VTFNDYVLPNEALSKGDIDLNAFQHKPYLDQQIKDRGYKLVSVGNSFVYPIAGYSKKIKS 123
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ + + + ++ + + ++E +
Sbjct: 124 LDELQPGSQVALPNDPTNLGRSLLLL------QSVGLIKLKDGVGLLPTVLDVVENPKNL 177
Query: 179 SFSQIR-----RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
++ R + A+ + + S + + G + V +V +
Sbjct: 178 KLVELEAPQLPRSLDDQQIALAIINTTYA--SQIGLTPAKDGLFVEDKESPYVNLIVARE 235
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKL 261
N+ + ++ + S + + K
Sbjct: 236 DNKDAENVKKFVQAYQ-SDEVYDAANKA 262
>gi|332529807|ref|ZP_08405761.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic
ligand-binding protein [Hylemonella gracilis ATCC 19624]
gi|332040828|gb|EGI77200.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic
ligand-binding protein [Hylemonella gracilis ATCC 19624]
Length = 331
Score = 41.7 bits (96), Expect = 0.14, Method: Composition-based stats.
Identities = 27/288 (9%), Positives = 71/288 (24%), Gaps = 25/288 (8%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTS--VILE-----EILG 54
++ L + + AR +R A + + + ++E + +
Sbjct: 3 FRFLTLAVTALALLTGTAR--AEEGRLRIAQQ-FGVVYLLLNVAQDQQLIEKHGKQQGVD 59
Query: 55 YKTNIKLLAVPVTFRS-LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
K L+ L IDI P + G + G
Sbjct: 60 IKVEFVQLSGGSAVNDALLAGSIDIAGAGVGPLFTIW---DRTRGKQNVKGVASLGNFPY 116
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
V++ I + D + + ++ N+ L
Sbjct: 117 YLVSNNPAVKTIADFTDKDRIALPSVGVSVQSRVLQFASAKLWGDKEFNRLDKLQVALPH 176
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
A+ + + ++ + + + ++ G ++
Sbjct: 177 PEAAAAIISGGTEITAHFGN--PPFQEQELAGNPKARIVLNSYDVLGGPASATLLYATEK 234
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHP 281
+ + P R N + + ++ + L+T+
Sbjct: 235 FRAESPKTYRAF---------VNALDEAAQFIARNPEQAADIYLKTNK 273
>gi|304397787|ref|ZP_07379663.1| taurine ABC transporter, periplasmic binding protein [Pantoea sp.
aB]
gi|304354498|gb|EFM18869.1| taurine ABC transporter, periplasmic binding protein [Pantoea sp.
aB]
Length = 325
Score = 41.7 bits (96), Expect = 0.14, Method: Composition-based stats.
Identities = 11/74 (14%), Positives = 20/74 (27%), Gaps = 1/74 (1%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I + W P + L + +G ++ VVR D+ ++ P
Sbjct: 160 AIIAAWQRGDIDGAYVWAPAVNELEKQGKVLTDSAAVGSWGSPTLDVWVVRKDFAEQHPE 219
Query: 241 ISRLLKNIKFSVAL 254
I
Sbjct: 220 IVTAFARSALDAQQ 233
>gi|229173572|ref|ZP_04301115.1| aliphatic sulfonates-binding protein [Bacillus cereus MM3]
gi|228609954|gb|EEK67233.1| aliphatic sulfonates-binding protein [Bacillus cereus MM3]
Length = 328
Score = 41.7 bits (96), Expect = 0.14, Method: Composition-based stats.
Identities = 27/253 (10%), Positives = 66/253 (26%), Gaps = 27/253 (10%)
Query: 3 KILAVCLFLTTFSISY----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEILG---Y 55
K+L+ L ++ F + A ++ EE
Sbjct: 6 KVLSFALVISLFLLGCEKSTASSKKEEVTIQIGIQQGLSPLLLAQ-KKGWFEEEFKKERV 64
Query: 56 KTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
K P F ++ + +D P + A ++ + +
Sbjct: 65 KVKWTEFQSGPPYFEAIASNRLDFGEVGNSPVISAQAAGIEF---TEIANTSYARKGTGI 121
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
V +K + K + G+ + + + K +I+
Sbjct: 122 LVQKDSKITSVKDLKG----------KKIAVAKGSSAFNLLYRALEKEGINAKDINVIQL 171
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDY 234
+ + + + W+P LN + + + + R+ +
Sbjct: 172 QPD----EAQPAFESGSVDAWAIWDPFISLHTLNKRAKVIADGELLNVSSPEFLIARTKF 227
Query: 235 LDKCPN-ISRLLK 246
+ P + + LK
Sbjct: 228 AKEHPELVEKFLK 240
>gi|22126982|ref|NP_670405.1| DL-methionine transporter substrate-binding subunit [Yersinia
pestis KIM 10]
gi|45442546|ref|NP_994085.1| DL-methionine transporter substrate-binding subunit [Yersinia
pestis biovar Microtus str. 91001]
gi|108806545|ref|YP_650461.1| DL-methionine transporter substrate-binding subunit [Yersinia
pestis Antiqua]
gi|108813088|ref|YP_648855.1| DL-methionine transporter substrate-binding subunit [Yersinia
pestis Nepal516]
gi|145598922|ref|YP_001162998.1| DL-methionine transporter substrate-binding subunit [Yersinia
pestis Pestoides F]
gi|149366927|ref|ZP_01888960.1| putative lipoprotein [Yersinia pestis CA88-4125]
gi|162420910|ref|YP_001607744.1| DL-methionine transporter substrate-binding subunit [Yersinia
pestis Angola]
gi|165927125|ref|ZP_02222957.1| D-methionine ABC transporter, periplasmic D-methionine-binding
protein [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165939824|ref|ZP_02228364.1| D-methionine ABC transporter, periplasmic D-methionine-binding
protein [Yersinia pestis biovar Orientalis str. IP275]
gi|166011933|ref|ZP_02232831.1| D-methionine ABC transporter, periplasmic D-methionine-binding
protein [Yersinia pestis biovar Antiqua str. E1979001]
gi|166211644|ref|ZP_02237679.1| D-methionine ABC transporter, periplasmic D-methionine-binding
protein [Yersinia pestis biovar Antiqua str. B42003004]
gi|167400050|ref|ZP_02305568.1| D-methionine ABC transporter, periplasmic D-methionine-binding
protein [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|167419837|ref|ZP_02311590.1| D-methionine ABC transporter, periplasmic D-methionine-binding
protein [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167425268|ref|ZP_02317021.1| D-methionine ABC transporter, periplasmic D-methionine-binding
protein [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|167470136|ref|ZP_02334840.1| D-methionine ABC transporter, periplasmic D-methionine-binding
protein [Yersinia pestis FV-1]
gi|218928240|ref|YP_002346115.1| DL-methionine transporter substrate-binding subunit [Yersinia
pestis CO92]
gi|229837779|ref|ZP_04457939.1| putative lipoprotein [Yersinia pestis Pestoides A]
gi|229841001|ref|ZP_04461160.1| putative lipoprotein [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229843102|ref|ZP_04463252.1| putative lipoprotein [Yersinia pestis biovar Orientalis str. India
195]
gi|229903531|ref|ZP_04518644.1| putative lipoprotein [Yersinia pestis Nepal516]
gi|270487312|ref|ZP_06204386.1| D-methionine-binding lipoprotein MetQ [Yersinia pestis KIM D27]
gi|294503087|ref|YP_003567149.1| putative lipoprotein [Yersinia pestis Z176003]
gi|23396725|sp|Q8ZH40|METQ_YERPE RecName: Full=D-methionine-binding lipoprotein metQ; Flags:
Precursor
gi|21960026|gb|AAM86656.1|AE013911_7 putative lipoprotein [Yersinia pestis KIM 10]
gi|45437411|gb|AAS62962.1| putative lipoprotein [Yersinia pestis biovar Microtus str. 91001]
gi|108776736|gb|ABG19255.1| lipoprotein [Yersinia pestis Nepal516]
gi|108778458|gb|ABG12516.1| putative lipoprotein [Yersinia pestis Antiqua]
gi|115346851|emb|CAL19737.1| putative lipoprotein [Yersinia pestis CO92]
gi|145210618|gb|ABP40025.1| lipoprotein [Yersinia pestis Pestoides F]
gi|149290541|gb|EDM40617.1| putative lipoprotein [Yersinia pestis CA88-4125]
gi|162353725|gb|ABX87673.1| D-methionine ABC transporter, periplasmic D-methionine-binding
protein [Yersinia pestis Angola]
gi|165912227|gb|EDR30864.1| D-methionine ABC transporter, periplasmic D-methionine-binding
protein [Yersinia pestis biovar Orientalis str. IP275]
gi|165921021|gb|EDR38245.1| D-methionine ABC transporter, periplasmic D-methionine-binding
protein [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165989199|gb|EDR41500.1| D-methionine ABC transporter, periplasmic D-methionine-binding
protein [Yersinia pestis biovar Antiqua str. E1979001]
gi|166207415|gb|EDR51895.1| D-methionine ABC transporter, periplasmic D-methionine-binding
protein [Yersinia pestis biovar Antiqua str. B42003004]
gi|166962578|gb|EDR58599.1| D-methionine ABC transporter, periplasmic D-methionine-binding
protein [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167050758|gb|EDR62166.1| D-methionine ABC transporter, periplasmic D-methionine-binding
protein [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|167055668|gb|EDR65452.1| D-methionine ABC transporter, periplasmic D-methionine-binding
protein [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|229679301|gb|EEO75404.1| putative lipoprotein [Yersinia pestis Nepal516]
gi|229689978|gb|EEO82037.1| putative lipoprotein [Yersinia pestis biovar Orientalis str. India
195]
gi|229697367|gb|EEO87414.1| putative lipoprotein [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229704156|gb|EEO91168.1| putative lipoprotein [Yersinia pestis Pestoides A]
gi|262361124|gb|ACY57845.1| putative lipoprotein [Yersinia pestis D106004]
gi|262365366|gb|ACY61923.1| putative lipoprotein [Yersinia pestis D182038]
gi|270335816|gb|EFA46593.1| D-methionine-binding lipoprotein MetQ [Yersinia pestis KIM D27]
gi|294353546|gb|ADE63887.1| putative lipoprotein [Yersinia pestis Z176003]
gi|320014206|gb|ADV97777.1| putative lipoprotein [Yersinia pestis biovar Medievalis str. Harbin
35]
Length = 271
Score = 41.7 bits (96), Expect = 0.14, Method: Composition-based stats.
Identities = 25/268 (9%), Positives = 70/268 (26%), Gaps = 18/268 (6%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K +A L P ++ + + + +E G +
Sbjct: 5 FKSIAAISALIGTLTLVGCGPTEKAPNHIKVGVIVGAEQQV-AEVAQKVAKEKYGLDVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V +L ID+ P L++ I + + A Y +
Sbjct: 64 VTFNDYVLPNEALSKGDIDLNAFQHKPYLDQQIKDRGYKLVSVGNSFVYPIAGYSKKIKS 123
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ + + + ++ + + ++E +
Sbjct: 124 LDELQPGSQVALPNDPTNLGRSLLLL------QSVGLIKLKDGVGLLPTVLDVVENPKNL 177
Query: 179 SFSQIR-----RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
++ R + A+ + + S + + G + V +V +
Sbjct: 178 KLVELEAPQLPRSLDDQQIALAIINTTYA--SQIGLTPAKDGLFVEDKESPYVNLIVARE 235
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKL 261
N+ + ++ + S + + K
Sbjct: 236 DNKDAENVKKFVQAYQ-SDEVYDAANKA 262
>gi|157372798|ref|YP_001480787.1| taurine transporter substrate binding subunit [Serratia
proteamaculans 568]
gi|157324562|gb|ABV43659.1| taurine ABC transporter, periplasmic binding protein [Serratia
proteamaculans 568]
Length = 331
Score = 41.7 bits (96), Expect = 0.14, Method: Composition-based stats.
Identities = 11/73 (15%), Positives = 21/73 (28%), Gaps = 1/73 (1%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I + W P L ++ +G ++ VVR D+ +K P
Sbjct: 163 AIAAAWQRGDIDGAYVWAPVVNELAKQGKVLTDSAQVGQWGAPTLDVWVVRKDFAEKHPE 222
Query: 241 ISRLLKNIKFSVA 253
+ +
Sbjct: 223 VVTAFAASALNAQ 235
>gi|218778055|ref|YP_002429373.1| extracellular solute-binding protein family 3 [Desulfatibacillum
alkenivorans AK-01]
gi|218759439|gb|ACL01905.1| extracellular solute-binding protein family 3 [Desulfatibacillum
alkenivorans AK-01]
Length = 341
Score = 41.7 bits (96), Expect = 0.14, Method: Composition-based stats.
Identities = 40/276 (14%), Positives = 74/276 (26%), Gaps = 34/276 (12%)
Query: 4 ILAVCLFLTTFSISYAR--------DADSCTPVRFADTGWTDIAATTAMT-----SVILE 50
+L + F +A + VR A T + + E
Sbjct: 8 VLVFAVLAIGFGAYWASQTKERAGDAPEIMEKVRLAVPK---GIITAPVLLAQSRGLFAE 64
Query: 51 EILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGA 110
L + F ++ D+ + P + + + +G
Sbjct: 65 AGLDVAYEDAYSSGKTAFEAMLRGEADVSVVATAPVVANSFSRDDF-FIFCTFTTSYEGV 123
Query: 111 KYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
K I K +L K G PG +Q LD + L
Sbjct: 124 KV------------IARQDLGVKNASDLKGKTVGFVPG-TISQLFLDSLLAYNRILPQEV 170
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
+ + + S + + WEPH + + S S+ T
Sbjct: 171 NAQPIKPQNASAL---LNSGEMQAVSIWEPHAYTALKDNQGSAVKVPSSSVYRISICTAS 227
Query: 231 RSDYLDKCPNI-SRLLKNIKFSVALENEMMKLILNN 265
D+ K PN+ +++ +K + A N+
Sbjct: 228 TKDFAAKSPNVLKKIILALKRTTAFMNDQPAQAQKE 263
>gi|24376191|ref|NP_720235.1| hypothetical protein SO_4719 [Shewanella oneidensis MR-1]
gi|24351242|gb|AAN57678.1|AE015904_1 conserved hypothetical protein [Shewanella oneidensis MR-1]
Length = 274
Score = 41.7 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 39/96 (40%), Gaps = 9/96 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYKT 57
M +L + + + ++ A+ A+ ++ A T T+ + + +L E GYK
Sbjct: 8 MKSLLGLVVAASMLTVLPAQSAE---VIKLATTTSTEN---SGLLQELLPKFESASGYKV 61
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP 93
+ + + +D+ M + + KF+A
Sbjct: 62 QVIATGTGKALKLGEQGDVDLVMTHAPSAEAKFVAD 97
>gi|183601455|ref|ZP_02962825.1| extracellular solute-binding protein family 3 [Bifidobacterium
animalis subsp. lactis HN019]
gi|219683509|ref|YP_002469892.1| extracellular solute-binding protein, family 3 precursor
[Bifidobacterium animalis subsp. lactis AD011]
gi|241191045|ref|YP_002968439.1| extracellular solute-binding protein [Bifidobacterium animalis
subsp. lactis Bl-04]
gi|241196451|ref|YP_002970006.1| extracellular solute-binding protein [Bifidobacterium animalis
subsp. lactis DSM 10140]
gi|183219061|gb|EDT89702.1| extracellular solute-binding protein family 3 [Bifidobacterium
animalis subsp. lactis HN019]
gi|219621159|gb|ACL29316.1| extracellular solute-binding protein, family 3 precursor
[Bifidobacterium animalis subsp. lactis AD011]
gi|240249437|gb|ACS46377.1| extracellular solute-binding protein [Bifidobacterium animalis
subsp. lactis Bl-04]
gi|240251005|gb|ACS47944.1| extracellular solute-binding protein [Bifidobacterium animalis
subsp. lactis DSM 10140]
gi|295794034|gb|ADG33569.1| extracellular solute-binding protein [Bifidobacterium animalis
subsp. lactis V9]
Length = 321
Score = 41.7 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 32/286 (11%), Positives = 76/286 (26%), Gaps = 37/286 (12%)
Query: 1 MYKIL-AVCLFLTTFSISYARDADSCT---PVRFADTGWTDIAATTAMTSVIL-EEILGY 55
M + A C L + S S + ++ +R A T TT L E +
Sbjct: 6 MLRFTSAACAALLSLSCSACGEPNAADSSTTMRVAYLS-TANYLTTVRGEDFLDETMQHT 64
Query: 56 KTNIK-LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
+ ++ + D + + + E G +
Sbjct: 65 NVKFTGPYNPTDAYSAVLSGNADATSTGTGSYINFV---AQGQPWVAFAIEYYTGDSQGI 121
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
G+ S +D+ + + G G+ + ++ + ++E
Sbjct: 122 V---ASPKSGVNSLEDLYGRNVAIIKR------GGTGDYVLHKAFEHDGLDVGRVNIVEM 172
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYT-VVRSD 233
S + + S++ + + + +G +V +V D
Sbjct: 173 SPSNFQA----AFTSGQIDALSSFDQNLAAAMATPGAKLL-VNATEYGNKNVSIHMVSKD 227
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQ---FVGRTM 276
+ K P + A+ +++ + R
Sbjct: 228 FATKHPEAVK---------AMYRALVRESDVAQATPSIITDAYREF 264
>gi|322831903|ref|YP_004211930.1| lipoprotein, YaeC family [Rahnella sp. Y9602]
gi|321167104|gb|ADW72803.1| lipoprotein, YaeC family [Rahnella sp. Y9602]
Length = 272
Score = 41.7 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 19/256 (7%), Positives = 57/256 (22%), Gaps = 21/256 (8%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
+ + ++ + + + ++ G + + + +
Sbjct: 26 QKSGDAKHIKVGVINGAEQDV-AEVAKKVAKDKYGLDVELVGFSGSLL--------PNDA 76
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
+ F + K +L G++ IK+ +
Sbjct: 77 TEHGDLDANVFQHRPFLDQDNKAHDYHLVVVGNTFVFPMAGYSKKIKTVDQLKDGATVAI 136
Query: 140 AKIYGIEPGNEGNQRILDMI---NNNKFSLKGFRLIEASELASFSQIRRD-----QRNNI 191
+ +I + E + ++ +
Sbjct: 137 PNDPTNLGRALLLLQKEKLITLKEGKGLLPTALDITENPHHLNIMELEGAQLPRVLDDPK 196
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFS 251
V + + + L+ + E V +V N+ LK+ +
Sbjct: 197 VDVAIISTTYIQQTGLSPVHDSVFIEDKNSP--YVNILVSRPDNKDAENVQEFLKSYQ-- 252
Query: 252 VALENEMMKLILNNKQ 267
+ + I N
Sbjct: 253 SPEVAKAAEKIFNGGA 268
>gi|150018161|ref|YP_001310415.1| aliphatic sulfonate ABC transporter periplasmic protein
[Clostridium beijerinckii NCIMB 8052]
gi|149904626|gb|ABR35459.1| aliphatic sulfonates family ABC transporter, periplsmic
ligand-binding protein [Clostridium beijerinckii NCIMB
8052]
Length = 346
Score = 41.7 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 28/239 (11%), Positives = 63/239 (26%), Gaps = 22/239 (9%)
Query: 10 FLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL-GYKTNIKLLAVPV-T 67
+T + A D+ +R + +LE+ G V
Sbjct: 28 TASTTGNTQASDSALPKEIRLGYFQSPNGELLAK-GEKLLEKKFPGISIKYVQFDVGRDV 86
Query: 68 FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKS 127
++ + IDI P + + Y L +
Sbjct: 87 NAAMASGSIDIATIGTPPGTTGIVNDLPYKI-------------YYLHDIIGSSEALVAK 133
Query: 128 YQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQ 187
++ K G+ + +L + N S +++ S +
Sbjct: 134 NTSGINSMADVKGKKIATPFGSTSHYSLLAALKQNNISENDVTILDMSAQDIIA----AW 189
Query: 188 RNNIPAVFLSWEP-HPINSDLNIHYLPGGEEISGFGEASVYT-VVRSDYLDKCPNISRL 244
W+P + E+++ G + +V +D+ K P++ +
Sbjct: 190 SRGEIDGAYIWQPAQSKLVSDGGKVILSSEDVAKGGAVTGEFGIVNNDFAAKYPDVVKA 248
>gi|261343476|ref|ZP_05971121.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Providencia rustigianii DSM 4541]
gi|282568624|gb|EFB74159.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Providencia rustigianii DSM 4541]
Length = 256
Score = 41.7 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 28/262 (10%), Positives = 64/262 (24%), Gaps = 15/262 (5%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVR-FADTGWTDIAATTAMTSVILEEILGYKTNI 59
M K L + T ++S ++ + + FA T A +++ ++ +
Sbjct: 1 MKKGLISLVAGATLTLSMVGNSFAAEKITVFAAASLT--NALNEISAQY-KKETNVEVVA 57
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ R ++ F + L G + +L
Sbjct: 58 SYASSSTLARQIEQGAPANMFISADQQWMDFAIDKNL--MVNDTRYTLLGNELVLIAPKD 115
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
++ + +KK L + + I + +
Sbjct: 116 SKIDKVEINKQT-DWKKLLDGGRLAVGDPDHVPVGIYAKEALTYLGAWETVNPLLARTNN 174
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV------VRSD 233
+ + + + S + E + V D
Sbjct: 175 VRSGMALVERQEAPLGIVYGSDAVASQKVKVVGIFPADTHKPVEYPMGIVKDQDNKATRD 234
Query: 234 YLD--KCPNISRLLKNIKFSVA 253
Y + K P S + K F+
Sbjct: 235 YYEYLKTPVASEVFKRYGFTTK 256
>gi|217957872|ref|YP_002336416.1| putative ABC transporter, substrate-binding protein [Bacillus
cereus AH187]
gi|229137139|ref|ZP_04265758.1| hypothetical protein bcere0013_2760 [Bacillus cereus BDRD-ST26]
gi|217067307|gb|ACJ81557.1| putative ABC transporter, substrate-binding protein [Bacillus
cereus AH187]
gi|228646311|gb|EEL02526.1| hypothetical protein bcere0013_2760 [Bacillus cereus BDRD-ST26]
Length = 280
Score = 41.7 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 42/276 (15%), Positives = 79/276 (28%), Gaps = 22/276 (7%)
Query: 1 MYKILAVCL--FLTTFSISYARDADSC-TPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M KILA L + ++S DA + VR TG A + E+ G K
Sbjct: 1 MKKILAFALSAIVGVSALSGCSDAGTKEKTVRIGVTGTDGNAW--EIVKEKAEKE-GIKV 57
Query: 58 NIKLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ + T ++L + I++ LE+F + + + + Y
Sbjct: 58 KLVEFSDYTTPNKALADGDIELNSFQHIAFLEQFKKEHKLDITAVGTTQIAPMGLYSEKH 117
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPG------NEGNQRILDMINNNKFSLKGFR 170
+ A G + G I N LK
Sbjct: 118 KKANEIPDGSEIAIPNDPTNQARALKLLDAAGLLKLKKDFGLFGDPSGIAENPKKLKITP 177
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
+I + NN A +P + +L + + +++
Sbjct: 178 VIAQQTPRVLKDVAASVINNGVAGQAGLDP-----AKDPIFLEDPKNENAKPYINIFAAR 232
Query: 231 RSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNK 266
D P + ++++ E +K N+
Sbjct: 233 TKD--KDDPTLKKVIELYH--SKEVTEAIKKETNDG 264
>gi|299069766|emb|CBJ41045.1| alkanesulfonate transporter subunit; periplasmic-binding component
of ABC superfamily [Ralstonia solanacearum CMR15]
Length = 311
Score = 41.4 bits (95), Expect = 0.16, Method: Composition-based stats.
Identities = 34/254 (13%), Positives = 76/254 (29%), Gaps = 25/254 (9%)
Query: 8 CLFLTTFSISYARDADSCTPVRFADTG---WTDIAATTAMTSVILEEILGYKTNIKLLAV 64
A AD VR + A A+ + + E LGY+ K
Sbjct: 2 LGAGLVLCGGMAAAADPAGTVRIGFQKAGLLAVLKAQGALDTPLAE--LGYRIEWKEFPA 59
Query: 65 PVTFRSLKN-KGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
N ID + + A + + AE A L V D A
Sbjct: 60 GPQLLEALNAGSIDF---GYTGAPPAVFAQAAGARFVYVGAEPGANANEALFVLDGSPAR 116
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
G+ + K ++ G+ N ++ ++ +++ + I ++
Sbjct: 117 GVADLKG----------KRIALQKGSSSNYLLVQLLKRAGLTVQDIQPIYLPP----AEA 162
Query: 184 RRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP-NIS 242
R + ++ W+P+ + + + + + ++ P ++
Sbjct: 163 RAAFESGAVDAWVVWDPYYALAQTALKVRTLADYTGLPSPFN-FYEATPGFVQAHPLAVN 221
Query: 243 RLLKNIKFSVALEN 256
+L ++ + N
Sbjct: 222 AILAQLRTTGLWVN 235
>gi|299134755|ref|ZP_07027947.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic
ligand-binding protein [Afipia sp. 1NLS2]
gi|298590565|gb|EFI50768.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic
ligand-binding protein [Afipia sp. 1NLS2]
Length = 340
Score = 41.4 bits (95), Expect = 0.16, Method: Composition-based stats.
Identities = 32/291 (10%), Positives = 75/291 (25%), Gaps = 32/291 (10%)
Query: 2 YKILAVCLFLTTFSISYARDA-DSCTPVRFADTGWTDIAATTAMTSV-ILE-----EILG 54
+ A+ L S +A A VR A T M +LE E LG
Sbjct: 7 KTMAAIGLVAGLTSAGFASGAHAEVNTVRIAKQYGVSYLPLTMMEEQHLLEKHAKAEGLG 66
Query: 55 -YKTN-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKY 112
K ++ + +L + +D G P L + + + K+ +
Sbjct: 67 DLKVEWLRFSSGSGMNEALLSGNLDFAGGGVGPMLTIWGK---TQNNYKVKGVAAINSMP 123
Query: 113 MLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ V + + I + ++ + ++ + + +L
Sbjct: 124 LYLVTT------NPNVKTIKDFTEKDKIGLPAVKVSIQAITLQMAAEKAFGVGQSH-KLD 176
Query: 173 EASELASFSQIRRDQRNNI--PAVFLSWEPHPINSDLNIHY--LPGGEEISGFGEASVYT 228
+ S P+ + + ++ G
Sbjct: 177 ALTVSMSHPDAMTAMLGGHSEVDAHFGSPPYQNLELKDPKAHLVLNSYDVLGGPHTFNSV 236
Query: 229 VVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+ + + P + + + + + N K D ++
Sbjct: 237 WATTKFAESNPKVMKAF---------LGALDEAMANIKADPAKAAAIWVKA 278
>gi|170022519|ref|YP_001719024.1| taurine transporter substrate binding subunit [Yersinia
pseudotuberculosis YPIII]
gi|169749053|gb|ACA66571.1| taurine ABC transporter, periplasmic binding protein [Yersinia
pseudotuberculosis YPIII]
Length = 353
Score = 41.4 bits (95), Expect = 0.16, Method: Composition-based stats.
Identities = 10/65 (15%), Positives = 18/65 (27%), Gaps = 1/65 (1%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I + W P L ++ +G ++ VVR D+ P
Sbjct: 179 AIAAAWQRGDIDGAYVWAPAVSELAKTGTVLTDSAQVGQWGAPTLDVWVVRKDFAKAHPE 238
Query: 241 ISRLL 245
+
Sbjct: 239 VVTAF 243
>gi|293393335|ref|ZP_06637648.1| taurine ABC superfamily ATP binding cassette transporter, binding
protein [Serratia odorifera DSM 4582]
gi|291424155|gb|EFE97371.1| taurine ABC superfamily ATP binding cassette transporter, binding
protein [Serratia odorifera DSM 4582]
Length = 331
Score = 41.4 bits (95), Expect = 0.16, Method: Composition-based stats.
Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 1/65 (1%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I + W P L E++ +G ++ VVR D+ ++ P
Sbjct: 163 AIAAAWQRGDIDGAYVWAPVVSELAKQGRVLADSEQVGQWGSPTLDVWVVRKDFAEQHPE 222
Query: 241 ISRLL 245
+
Sbjct: 223 VVTAF 227
>gi|261253005|ref|ZP_05945578.1| ABC-type tungstate transport system binding protein [Vibrio
orientalis CIP 102891]
gi|260936396|gb|EEX92385.1| ABC-type tungstate transport system binding protein [Vibrio
orientalis CIP 102891]
Length = 272
Score = 41.4 bits (95), Expect = 0.16, Method: Composition-based stats.
Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 7/97 (7%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTP-VRFADTGWTDIAATTAMTSVIL---EEILGYK 56
M I + +SY+ A VR A T + + +L E+ GYK
Sbjct: 1 MKAITFTLATASLALVSYSASAAGDNTHVRLAT---TTSTYHSGLLDYLLPEFEKDTGYK 57
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP 93
++ + + +N +D+ M + + F+
Sbjct: 58 VDVIAAGTGKSLKMGQNGDVDLVMTHAPKAEANFVEK 94
>gi|228921580|ref|ZP_04084901.1| aliphatic sulfonates-binding protein [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228838097|gb|EEM83417.1| aliphatic sulfonates-binding protein [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
Length = 328
Score = 41.4 bits (95), Expect = 0.16, Method: Composition-based stats.
Identities = 33/285 (11%), Positives = 76/285 (26%), Gaps = 32/285 (11%)
Query: 2 YKILAVCLFLTTFSISY----ARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL---G 54
+K+L+ L ++ + A ++ EE G
Sbjct: 5 FKVLSFALAISVCLLGCEKSTASSKKEDVTIQIGIQQGLSPLLLAK-KKGWFEEEFKKEG 63
Query: 55 YKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
K P F ++ + +D P + A ++ +
Sbjct: 64 VKVKWTEFQSGPPYFEAIASNRLDFGEVGNSPVISAQAAGIGF---TEIANTSYARKGTG 120
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+ V +K EL K + G+ + ++ K +I+
Sbjct: 121 ILVQKDSKIASVK----------ELKGKKIAVAKGSSAFNLLYRALDKEGIDAKDVNVIQ 170
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+ + + + W+P LN + + + + + R+
Sbjct: 171 LQPD----EAQPVFESGSVDAWAIWDPFISLHTLNKGAKVIADGETLNVSSPEFLITRTK 226
Query: 234 YLDKCPNISRLL-----KNIKFSVALENEMM-KLILNNKQDRQFV 272
+ + P + K + A +E + K D + V
Sbjct: 227 FAKEHPELVEKFLKVYEKARVWQDANLDEAIKVYTSVKKIDAEIV 271
>gi|218779350|ref|YP_002430668.1| hypothetical protein Dalk_1500 [Desulfatibacillum alkenivorans
AK-01]
gi|218760734|gb|ACL03200.1| conserved hypothetical protein [Desulfatibacillum alkenivorans
AK-01]
Length = 294
Score = 41.4 bits (95), Expect = 0.16, Method: Composition-based stats.
Identities = 12/107 (11%), Positives = 31/107 (28%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M +I + + ++ + T T + + LE+ G + +
Sbjct: 1 MKRIATLFVIALLCLCLAPSAFAGDKVIKMSTTTSTQASGLLDILLPALEKDTGIQVKVI 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL 107
R + +D+ + E F+A ++ +
Sbjct: 61 AKGTGAAIRDGMDGNVDVIFVHAKSREEAFVAEGYGTKRYAVMHNDF 107
>gi|226307496|ref|YP_002767456.1| ABC transporter substrate-binding protein [Rhodococcus erythropolis
PR4]
gi|226186613|dbj|BAH34717.1| putative ABC transporter substrate-binding protein [Rhodococcus
erythropolis PR4]
Length = 342
Score = 41.4 bits (95), Expect = 0.16, Method: Composition-based stats.
Identities = 31/279 (11%), Positives = 61/279 (21%), Gaps = 39/279 (13%)
Query: 11 LTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILE---EILGYKTNIKLLAVPVT 67
T + A S +RFA WT T + + E E G +I
Sbjct: 20 FTVLTGCAADTGSSDGTIRFA-LDWTPNTNHTGLYVALQEGYFEDAGLDVSILPYNNTSP 78
Query: 68 FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKS 127
+ + + + + V LQ + V +
Sbjct: 79 DTLVDAGN----AEFGISTQSQATFARAAGAATTSVIAPLQHRATGIGVKADRADITRPR 134
Query: 128 YQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR-- 185
D Y N + + + +
Sbjct: 135 DLDGKTYAGFGDPGEVETLQQIIRNDGGTGNFTTVTLGTSAYEAVYSGQADFTVSYFAWE 194
Query: 186 ---DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+RN P + + + S+ +L P+
Sbjct: 195 GLEAERNGTPMRYFQYT-----------------DYGFPDAYSIVINGNQQWLKDHPD-- 235
Query: 243 RLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHP 281
+ KF A++ N + ++ +P
Sbjct: 236 ---EARKFVKAVQRGYQTAADN----PDQAAQDLIDANP 267
>gi|238763750|ref|ZP_04624709.1| Taurine-binding periplasmic protein [Yersinia kristensenii ATCC
33638]
gi|238698052|gb|EEP90810.1| Taurine-binding periplasmic protein [Yersinia kristensenii ATCC
33638]
Length = 347
Score = 41.4 bits (95), Expect = 0.17, Method: Composition-based stats.
Identities = 10/67 (14%), Positives = 19/67 (28%), Gaps = 1/67 (1%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I + W P L ++ +G ++ VVR D+ + P
Sbjct: 179 AIAAAWQRGDIDGAYVWAPAVNELAKTGTVLTDSAQVGQWGAPTLDVWVVRKDFAEAHPE 238
Query: 241 ISRLLKN 247
+
Sbjct: 239 VVTAFAR 245
>gi|260596619|ref|YP_003209190.1| DL-methionine transporter substrate-binding subunit [Cronobacter
turicensis z3032]
gi|260215796|emb|CBA28235.1| D-methionine-binding lipoprotein metQ [Cronobacter turicensis
z3032]
Length = 252
Score = 41.4 bits (95), Expect = 0.17, Method: Composition-based stats.
Identities = 24/263 (9%), Positives = 65/263 (24%), Gaps = 12/263 (4%)
Query: 15 SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVT-FRSLKN 73
++ ++ + + + +E G + V +L
Sbjct: 1 MAGCGQEEKDPNHIKVGVIVGAEQQV-AEVAKKVAKEKYGLDVELVTFNDYVLPNEALSK 59
Query: 74 KGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAK 133
ID P L++ I + A Y + +
Sbjct: 60 GDIDANAFQHKPYLDQQIKDRGYKLVSVGNTFVYPIAGYSRKIKSLDDLQPGAQVAVPND 119
Query: 134 YKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPA 193
+ + + G + + ++ + Q+ R ++ A
Sbjct: 120 PTNLGRSLLLLQKVGLIKLKDDIGLLPT-VLDITENPKNLKIVELEAPQLPRSLDDDQIA 178
Query: 194 VFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVA 253
+ + + S +N+ G + V +V + N+ + ++ +
Sbjct: 179 LAVINTTYA--SQINLTPAKDGIFVEDKDSPYVNMIVTREDNKDAENVKKFVQAYQ--SD 234
Query: 254 LENEMMKLILNNKQDRQFVGRTM 276
NE + N +
Sbjct: 235 EVNEAANKVFNGG-----AVKGW 252
>gi|153948232|ref|YP_001402886.1| taurine transporter substrate binding subunit [Yersinia
pseudotuberculosis IP 31758]
gi|152959727|gb|ABS47188.1| taurine ABC transporter, periplasmic taurine-binding protein
[Yersinia pseudotuberculosis IP 31758]
Length = 347
Score = 41.4 bits (95), Expect = 0.17, Method: Composition-based stats.
Identities = 10/65 (15%), Positives = 18/65 (27%), Gaps = 1/65 (1%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I + W P L ++ +G ++ VVR D+ P
Sbjct: 179 AIAAAWQRGDIDGAYVWAPAVSELAKTGTVLTDSAQVGQWGAPTLDVWVVRKDFAKAHPE 238
Query: 241 ISRLL 245
+
Sbjct: 239 VVTAF 243
>gi|163800933|ref|ZP_02194833.1| hypothetical protein 1103602000593_AND4_01683 [Vibrio sp. AND4]
gi|159175282|gb|EDP60079.1| hypothetical protein AND4_01683 [Vibrio sp. AND4]
Length = 275
Score = 41.4 bits (95), Expect = 0.17, Method: Composition-based stats.
Identities = 29/282 (10%), Positives = 61/282 (21%), Gaps = 23/282 (8%)
Query: 1 MYKILAVCLFLTTFSISYAR-DADSCTPVRFADTGWTDIAATTAMTSVI---LEEILGYK 56
M KI L+ SY A +R A T + + + E+ GYK
Sbjct: 1 MKKIAQAFTVLSITLASYPTLSAQEGEHIRLAT---TTSTYHSGLLDYLVPQFEKETGYK 57
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGY-------WYPSLEKFIAPYLEEGSIKLVAENLQG 109
+I + +N +D+ M + + + + L +V
Sbjct: 58 VDIIAAGTGKALKMGENGDVDLVMTHAPKAEGLFVENGYGVLPRKLMYNDFVIVGPKSDP 117
Query: 110 AKYM-----LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKF 164
A+ L V + E N +
Sbjct: 118 AQVKDDTSVLEVFKEIANKDAMFISRGDDSGTHKKELGIWAQTKMEPNFGGYRSVGQGMG 177
Query: 165 SLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEA 224
+ +N + + + ++ + E
Sbjct: 178 PTLNMASEMQGYTMTDRGTWLAYQNKL-DLAVLFQGDEKL-FNPYQVILVNPERYPNINY 235
Query: 225 SVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNK 266
++ L+ + +K
Sbjct: 236 QGAKTFSDWLVNTHGQ--ELINRFLLNGKQLFVANAESKESK 275
>gi|22127833|ref|NP_671256.1| taurine transporter substrate binding subunit [Yersinia pestis KIM
10]
gi|51598012|ref|YP_072203.1| taurine transporter substrate binding subunit [Yersinia
pseudotuberculosis IP 32953]
gi|108814045|ref|YP_649812.1| taurine transporter substrate binding subunit [Yersinia pestis
Nepal516]
gi|145597428|ref|YP_001161503.1| taurine transporter substrate binding subunit [Yersinia pestis
Pestoides F]
gi|150260767|ref|ZP_01917495.1| putative taurine-binding periplasmic protein precursor [Yersinia
pestis CA88-4125]
gi|165927905|ref|ZP_02223737.1| taurine ABC transporter, periplasmic taurine-binding protein
[Yersinia pestis biovar Orientalis str. F1991016]
gi|165939996|ref|ZP_02228532.1| taurine ABC transporter, periplasmic taurine-binding protein
[Yersinia pestis biovar Orientalis str. IP275]
gi|166010427|ref|ZP_02231325.1| taurine ABC transporter, periplasmic taurine-binding protein
[Yersinia pestis biovar Antiqua str. E1979001]
gi|166213167|ref|ZP_02239202.1| taurine ABC transporter, periplasmic taurine-binding protein
[Yersinia pestis biovar Antiqua str. B42003004]
gi|167419055|ref|ZP_02310808.1| taurine ABC transporter, periplasmic taurine-binding protein
[Yersinia pestis biovar Orientalis str. MG05-1020]
gi|167425670|ref|ZP_02317423.1| taurine ABC transporter, periplasmic taurine-binding protein
[Yersinia pestis biovar Mediaevalis str. K1973002]
gi|167468836|ref|ZP_02333540.1| taurine transporter substrate binding subunit [Yersinia pestis
FV-1]
gi|218927391|ref|YP_002345266.1| taurine transporter substrate binding subunit [Yersinia pestis
CO92]
gi|229836336|ref|ZP_04456503.1| putative taurine-binding periplasmic protein precursor [Yersinia
pestis Pestoides A]
gi|229840040|ref|ZP_04460199.1| putative taurine-binding periplasmic protein precursor [Yersinia
pestis biovar Orientalis str. PEXU2]
gi|229842122|ref|ZP_04462277.1| putative taurine-binding periplasmic protein precursor [Yersinia
pestis biovar Orientalis str. India 195]
gi|229904578|ref|ZP_04519689.1| putative taurine-binding periplasmic protein precursor [Yersinia
pestis Nepal516]
gi|270488208|ref|ZP_06205282.1| taurine ABC transporter, periplasmic binding protein [Yersinia
pestis KIM D27]
gi|294502267|ref|YP_003566329.1| putative taurine-binding periplasmic protein precursor [Yersinia
pestis Z176003]
gi|21960966|gb|AAM87507.1|AE014000_11 taurine-binding periplasmic protein of taurine ABC transport system
[Yersinia pestis KIM 10]
gi|51591294|emb|CAH22960.1| ABC transporter, periplasmic taurine-binding protein [Yersinia
pseudotuberculosis IP 32953]
gi|108777693|gb|ABG20212.1| taurine-binding periplasmic protein precursor [Yersinia pestis
Nepal516]
gi|115346002|emb|CAL18867.1| putative taurine-binding periplasmic protein precursor [Yersinia
pestis CO92]
gi|145209124|gb|ABP38531.1| taurine-binding periplasmic protein precursor [Yersinia pestis
Pestoides F]
gi|149290175|gb|EDM40252.1| putative taurine-binding periplasmic protein precursor [Yersinia
pestis CA88-4125]
gi|165912036|gb|EDR30677.1| taurine ABC transporter, periplasmic taurine-binding protein
[Yersinia pestis biovar Orientalis str. IP275]
gi|165920181|gb|EDR37482.1| taurine ABC transporter, periplasmic taurine-binding protein
[Yersinia pestis biovar Orientalis str. F1991016]
gi|165990517|gb|EDR42818.1| taurine ABC transporter, periplasmic taurine-binding protein
[Yersinia pestis biovar Antiqua str. E1979001]
gi|166205465|gb|EDR49945.1| taurine ABC transporter, periplasmic taurine-binding protein
[Yersinia pestis biovar Antiqua str. B42003004]
gi|166963049|gb|EDR59070.1| taurine ABC transporter, periplasmic taurine-binding protein
[Yersinia pestis biovar Orientalis str. MG05-1020]
gi|167055360|gb|EDR65154.1| taurine ABC transporter, periplasmic taurine-binding protein
[Yersinia pestis biovar Mediaevalis str. K1973002]
gi|229678696|gb|EEO74801.1| putative taurine-binding periplasmic protein precursor [Yersinia
pestis Nepal516]
gi|229690432|gb|EEO82486.1| putative taurine-binding periplasmic protein precursor [Yersinia
pestis biovar Orientalis str. India 195]
gi|229696406|gb|EEO86453.1| putative taurine-binding periplasmic protein precursor [Yersinia
pestis biovar Orientalis str. PEXU2]
gi|229706404|gb|EEO92411.1| putative taurine-binding periplasmic protein precursor [Yersinia
pestis Pestoides A]
gi|262360347|gb|ACY57068.1| putative taurine-binding periplasmic protein precursor [Yersinia
pestis D106004]
gi|262364298|gb|ACY60855.1| putative taurine-binding periplasmic protein precursor [Yersinia
pestis D182038]
gi|270336712|gb|EFA47489.1| taurine ABC transporter, periplasmic binding protein [Yersinia
pestis KIM D27]
gi|294352726|gb|ADE63067.1| putative taurine-binding periplasmic protein precursor [Yersinia
pestis Z176003]
gi|320013317|gb|ADV96888.1| putative taurine-binding periplasmic protein precursor [Yersinia
pestis biovar Medievalis str. Harbin 35]
Length = 353
Score = 41.4 bits (95), Expect = 0.17, Method: Composition-based stats.
Identities = 10/65 (15%), Positives = 18/65 (27%), Gaps = 1/65 (1%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I + W P L ++ +G ++ VVR D+ P
Sbjct: 179 AIAAAWQRGDIDGAYVWAPAVSELAKTGTVLTDSAQVGQWGAPTLDVWVVRKDFAKAHPE 238
Query: 241 ISRLL 245
+
Sbjct: 239 VVTAF 243
>gi|186897208|ref|YP_001874320.1| taurine transporter substrate binding subunit [Yersinia
pseudotuberculosis PB1/+]
gi|186700234|gb|ACC90863.1| taurine ABC transporter, periplasmic binding protein [Yersinia
pseudotuberculosis PB1/+]
Length = 347
Score = 41.4 bits (95), Expect = 0.18, Method: Composition-based stats.
Identities = 10/65 (15%), Positives = 18/65 (27%), Gaps = 1/65 (1%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I + W P L ++ +G ++ VVR D+ P
Sbjct: 179 AIAAAWQRGDIDGAYVWAPAVSELAKTGTVLTDSAQVGQWGAPTLDVWVVRKDFAKAHPE 238
Query: 241 ISRLL 245
+
Sbjct: 239 VVTAF 243
>gi|51244309|ref|YP_064193.1| molybdenum ABC transporter, substrate binding periplasmic protein
(ModA) [Desulfotalea psychrophila LSv54]
gi|50875346|emb|CAG35186.1| probable molybdenum ABC transporter, substrate binding periplasmic
protein (ModA) [Desulfotalea psychrophila LSv54]
Length = 251
Score = 41.4 bits (95), Expect = 0.18, Method: Composition-based stats.
Identities = 25/250 (10%), Positives = 62/250 (24%), Gaps = 22/250 (8%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADT-GWTDIAATTAMTSVILEEILGYKTNI 59
M + + + S + S +R A +T A + S + +K +
Sbjct: 1 MKRGVCFFCSIIVLSFLLVAGSASAEQIRVAVASNFTG--AIKEIASS-FQAKTSHKVVL 57
Query: 60 KLLAVPVTFRSLKNK---GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ + +KN P LEE + + A L +
Sbjct: 58 LFGSTGKHYAQIKNGAPFDAFFAADVRRP-------KLLEEEGLAVAGTRFTYAMGTLVL 110
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ A + + + ++ N L +
Sbjct: 111 --WSADPQLLDDSATALKEGRFHHLAFANPKLAPYGKASQQVLEN--LGLWKQLQPKFVR 166
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
+ SQ + ++ + + ++ ++ + V L
Sbjct: 167 GENISQALQFIKSGNAELGFIALSQLKSGKADLQGSLWKVPVALYSPIEQQAV----LLR 222
Query: 237 KCPNISRLLK 246
++ L+
Sbjct: 223 DNKVAAQFLE 232
>gi|260555331|ref|ZP_05827552.1| taurine ABC transporter, periplasmic binding protein [Acinetobacter
baumannii ATCC 19606]
gi|260411873|gb|EEX05170.1| taurine ABC transporter, periplasmic binding protein [Acinetobacter
baumannii ATCC 19606]
Length = 346
Score = 41.4 bits (95), Expect = 0.18, Method: Composition-based stats.
Identities = 14/95 (14%), Positives = 32/95 (33%), Gaps = 10/95 (10%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY-TVVRSDYLDKCPN 240
+I WEP + + L +++ +G + VVR D+ +K P+
Sbjct: 185 EISAAWERGDIDAAYVWEPVLSKAKASGTVLTDSKQVGEWGAPTYDLWVVRKDFAEKNPD 244
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRT 275
+ ++ ++ + QD +
Sbjct: 245 FLKAF--VQTTLEQLEKYN-------QDPAAYVKD 270
>gi|238792916|ref|ZP_04636546.1| Taurine-binding periplasmic protein [Yersinia intermedia ATCC
29909]
gi|238727770|gb|EEQ19294.1| Taurine-binding periplasmic protein [Yersinia intermedia ATCC
29909]
Length = 342
Score = 41.4 bits (95), Expect = 0.18, Method: Composition-based stats.
Identities = 10/67 (14%), Positives = 18/67 (26%), Gaps = 1/67 (1%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I + W P L ++ +G ++ VVR D+ P
Sbjct: 174 AIAAAWQRGDIDGAYVWAPAVNELAKTGTVLTDSAQVGQWGAPTLDVWVVRKDFAKAHPE 233
Query: 241 ISRLLKN 247
+
Sbjct: 234 VVTAFAR 240
>gi|330503652|ref|YP_004380521.1| ABC transporter periplasmic substrate-binding protein [Pseudomonas
mendocina NK-01]
gi|328917938|gb|AEB58769.1| ABC transporter, periplasmic substrate-binding protein [Pseudomonas
mendocina NK-01]
Length = 334
Score = 41.4 bits (95), Expect = 0.19, Method: Composition-based stats.
Identities = 25/256 (9%), Positives = 60/256 (23%), Gaps = 20/256 (7%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTS--VILEEI---LG- 54
M K V +++ A + + A T + ++E+ LG
Sbjct: 1 MKKSSIVTALGLLSALTLPLAAQAEGKISIAQQFGTGYLVL-HVVKDQHLIEKHAKALGL 59
Query: 55 --YKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKY 112
+ ++ G + P + ++K VA Y
Sbjct: 60 DKIDVEWRTISGATAMNEALLAGAIDVVSAGVPPMLTVWDRSHGRQNVKAVAALGSLPGY 119
Query: 113 MLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+L + + + ++ + G + ++
Sbjct: 120 VL--------SNREGVKTLDDLTEKDRLAVPAAGVGFQSRTLQIEAAKRYGKDDFQRFDA 171
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEP---HPINSDLNIHYLPGGEEISGFGEASVYTV 229
+ L + P + + +H L +I G
Sbjct: 172 ISISLPHPDATAALIKGGSEITAHFSSPPFQYQALENPKVHKLISSYDILGGPATFNVLY 231
Query: 230 VRSDYLDKCPNISRLL 245
+ D+ P +
Sbjct: 232 ATEKFHDENPKTYKAF 247
>gi|30018556|ref|NP_830187.1| ABC transporter substrate-binding protein [Bacillus cereus ATCC
14579]
gi|229125799|ref|ZP_04254825.1| hypothetical protein bcere0015_2640 [Bacillus cereus BDRD-Cer4]
gi|29894097|gb|AAP07388.1| ABC transporter substrate-binding protein [Bacillus cereus ATCC
14579]
gi|228657656|gb|EEL13468.1| hypothetical protein bcere0015_2640 [Bacillus cereus BDRD-Cer4]
Length = 283
Score = 41.4 bits (95), Expect = 0.19, Method: Composition-based stats.
Identities = 39/256 (15%), Positives = 74/256 (28%), Gaps = 20/256 (7%)
Query: 1 MYKILAVCL--FLTTFSISYARDADSC-TPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M KILA L + ++S DA + VR TG A + E+ G K
Sbjct: 4 MKKILAFALSAIVGISALSGCSDAGAKEKTVRIGVTGTDGNAW--EIVKRKAEKE-GIKV 60
Query: 58 NIKLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ + T ++L + I++ LE+F + + + + Y
Sbjct: 61 KLIEFSDYTTPNKALADGDIELNSFQHIAFLEQFKKEHKLDITAVGTTQIAPMGLYSEKY 120
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPG------NEGNQRILDMINNNKFSLKGFR 170
+ A G + G I N LK
Sbjct: 121 KKSNEIPDGSEIAIPNDPTNQARALKLLDAAGLLKLKKDFGLFGDPSGIAENPKKLKITP 180
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
+I + NN A +P + +L + + +++
Sbjct: 181 VIAQQTPRVLKDVAASVINNGVAGQAGLDP-----AKDPIFLEDPKNENAKPYINIFAAR 235
Query: 231 RSDYLDKCPNISRLLK 246
D P + ++++
Sbjct: 236 TKD--KDDPTLKKVIE 249
>gi|162451029|ref|YP_001613396.1| ABC transporter, substrate binding protein [Sorangium cellulosum
'So ce 56']
gi|161161611|emb|CAN92916.1| ABC transporter, substrate binding protein [Sorangium cellulosum
'So ce 56']
Length = 479
Score = 41.4 bits (95), Expect = 0.20, Method: Composition-based stats.
Identities = 40/297 (13%), Positives = 86/297 (28%), Gaps = 43/297 (14%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVR--FADTGWTDIAATTAMTSV---ILEEILGYKT 57
+ L L + ++ +R T AT + +LE+ L
Sbjct: 6 RALVFLTLLAAVVAGLSCKPEAKQTIRIAIGTQDTTINCATGGLLIRELKLLEKHLPKDG 65
Query: 58 NIKLLAVPVTFRSLKNK----------GIDIFMGYWYP---SLEKFIAPYLEEGSIKLVA 104
K + + ++ + +DI +P + F I ++
Sbjct: 66 KYKDVTYEIEWKDFTSGPPLTTEMVAEKLDIGAMADFPGVLNGVAFQKQGSRSRFIATLS 125
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKF 164
+ G+ + V A G+K + K + G+ + +L I + +
Sbjct: 126 GSALGSGNGIVVPSDSPAQGLKDLKG----------KQISVPFGSSAHGMLLRAIRDLGW 175
Query: 165 S-LKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
K L+ S S ++ ++ + E P Y G ++
Sbjct: 176 DPDKDVTLVSQSPEVGGSSLKANKIDAHADFVPFAELFPFRGFARKIYDGSGVKV----P 231
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNIKFSVALE--------NEMMKLILNNKQDRQFV 272
+ +VR Y +K P I +E+++ + D +
Sbjct: 232 TAHGVLVREAYAEKYPEIVVAFLKAALEADRLFAEEPEKYSELIEKVT--GVDAEVA 286
>gi|226952052|ref|ZP_03822516.1| ABC taurine transport system, periplasmic component [Acinetobacter
sp. ATCC 27244]
gi|226837209|gb|EEH69592.1| ABC taurine transport system, periplasmic component [Acinetobacter
sp. ATCC 27244]
Length = 340
Score = 41.0 bits (94), Expect = 0.20, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 40/118 (33%), Gaps = 16/118 (13%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY-TVVRSDYLDKCPN 240
+I WEP + H L +++ +G + VVR D+ +K P
Sbjct: 179 EITAAWERGDIDATYVWEPALSKVKASGHVLTDSKQVGEWGAPTYDLWVVRKDFAEKNPE 238
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
+ +K I + QD + + D ++ + +T D +D
Sbjct: 239 FLKAF---------VQTSLKQIESYNQDPKA-----FEKNADNIQK-IAQLTGSDAKD 281
>gi|327439247|dbj|BAK15612.1| ABC-type nitrate/sulfonate/bicarbonate transport systems,
periplasmic component [Solibacillus silvestris StLB046]
Length = 312
Score = 41.0 bits (94), Expect = 0.21, Method: Composition-based stats.
Identities = 31/215 (14%), Positives = 61/215 (28%), Gaps = 27/215 (12%)
Query: 1 MYKILAV--CLFLTTFSISYARDADSCTPVRFAD-TGWTDIAATTAMTSVILE---EILG 54
M K+L++ L L+ + A VR T + + LE + LG
Sbjct: 1 MKKLLSIFFLLTLSVILVGCASSNAENKKVRIGYQKNGTTLLLKSN---GELESRLKELG 57
Query: 55 YKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
Y +L + ID PS+ + + E+
Sbjct: 58 YSVEWSEFNTGSSILEALNSGAIDFANASDAPSMMALSKGMNFKY---IAGEDSSPQMEG 114
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+ V + G I ++L K + ++ + +L +
Sbjct: 115 ILVKNDGSIQSI----------EQLKGKKIAYNKASISEYLLVTALATVNLTLDDVESVI 164
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLN 208
S + N ++ W+P+ S+
Sbjct: 165 LSP----ADANIAFENGDVDAWVIWDPYMTVSESK 195
>gi|256074232|ref|XP_002573430.1| tyrosine kinase [Schistosoma mansoni]
gi|238658609|emb|CAZ29662.1| tyrosine kinase [Schistosoma mansoni]
Length = 1560
Score = 41.0 bits (94), Expect = 0.21, Method: Composition-based stats.
Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 8/81 (9%)
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLIL----NNKQD----R 269
F + + P I +L+ + FS + +++K N+ QD
Sbjct: 297 FCQFESQQATKLSWAKLKSTVPLIYQLVDRMHFSQSEYEDLLKSANHLDPNSGQDLRSQY 356
Query: 270 QFVGRTMLRTHPDLLKNWLIG 290
+ + LR P +W G
Sbjct: 357 RDIACKWLRLSPTRWVSWTKG 377
>gi|18369833|gb|AAL67949.1| receptor tyrosine kinase [Schistosoma mansoni]
Length = 1559
Score = 41.0 bits (94), Expect = 0.21, Method: Composition-based stats.
Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 8/81 (9%)
Query: 218 ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLIL----NNKQD----R 269
F + + P I +L+ + FS + +++K N+ QD
Sbjct: 297 FCQFESQQATKLSWAKLKSTVPLIYQLVDRMHFSQSEYEDLLKSANHLDPNSGQDLRSQY 356
Query: 270 QFVGRTMLRTHPDLLKNWLIG 290
+ + LR P +W G
Sbjct: 357 RDIACKWLRLSPTRWVSWTKG 377
>gi|329926375|ref|ZP_08280851.1| ABC transporter, substrate-binding protein, aliphatic sulfonates
family [Paenibacillus sp. HGF5]
gi|328939296|gb|EGG35656.1| ABC transporter, substrate-binding protein, aliphatic sulfonates
family [Paenibacillus sp. HGF5]
Length = 339
Score = 41.0 bits (94), Expect = 0.21, Method: Composition-based stats.
Identities = 36/291 (12%), Positives = 85/291 (29%), Gaps = 36/291 (12%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCT-----------PVRFADTGWTD--IAATTAMTSV 47
+ +L + +F + + + ++ A VR G A
Sbjct: 10 IMLLLILSVFASGCAGANSQPAAGAVKKGADGKYTDLTVRLGVQGSGGLFGKAREERWFE 69
Query: 48 ILEEILGYKTNI-KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAEN 106
LG K + + P ++ + +D P + A + + +
Sbjct: 70 EEFGKLGVKVEWAEFQSGPPMTEAMASNRLDFAGLGNMPIIAAQAADIPFKVISQSLHGQ 129
Query: 107 LQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSL 166
A + V A + + + G N + + D +
Sbjct: 130 KNVA---IIVPPDSPAQTLSDLKGKKVAVTK------GSNAFNFLYRGLADQ----GLKV 176
Query: 167 KGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV 226
+I+ + + + + +W+P+ + L + +
Sbjct: 177 SDIEIIQLQPD----EAQPAFESGGVDAWATWDPYITLNTLTGKGKVLADGEQLGVLSPS 232
Query: 227 YTVVRSDYLDKCPNISRL----LKN-IKFSVALENEMMKLILNNKQDRQFV 272
+ +VR D+ D+ P++ L L + + E E +K + + Q V
Sbjct: 233 FNIVRKDFADQYPDLVTLYLTVLNKTLAWEKENEAEAIKRYADERGIPQEV 283
>gi|296133750|ref|YP_003640997.1| aliphatic sulfonates family ABC transporter, periplasmic
ligand-binding protein [Thermincola sp. JR]
gi|296032328|gb|ADG83096.1| aliphatic sulfonates family ABC transporter, periplasmic
ligand-binding protein [Thermincola potens JR]
Length = 349
Score = 41.0 bits (94), Expect = 0.21, Method: Composition-based stats.
Identities = 39/307 (12%), Positives = 86/307 (28%), Gaps = 58/307 (18%)
Query: 4 ILAVCLFLTTFSISYARDA-----DSCTPVRFAD-TGWTDIAATTAMTSVILEEILGYKT 57
+L + + + D D +R T A ++ +G +
Sbjct: 11 VLILSVLAIVALAGCSGDKTEKTQDGKQVIRVGYFPNLTHAQALAGFGDGTFQKAMGSEV 70
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
I+ F + + + G + K + GA AV
Sbjct: 71 TIQ----EHIFNAGPTEIEALLAGEIDLGYIGPVPAINGFVKSKGGLRIISGAADAGAVL 126
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
GI+ +D+ + + GN + + ++++
Sbjct: 127 IARKGAGIEKVKDLDGKRVAVPQL------GNTQDISLRNLLSQ---------------- 164
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDK 237
+ ++ + V + P + G + + E +V+
Sbjct: 165 ---ANLKDASKGGTVTVIPAENPDIL-----TLISKGEVDAALVPEPWGSRIVKETGARV 216
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIG---VTTF 294
+ + ++ K+S A+ L+ HPDL++ WL +T
Sbjct: 217 VLDAKEVWRDGKYSTAVVI---------------ASSKFLKEHPDLVEKWLKAHVEITER 261
Query: 295 DGQDPSR 301
G+DP
Sbjct: 262 IGKDPKA 268
>gi|317486039|ref|ZP_07944893.1| hypothetical protein HMPREF0179_02248 [Bilophila wadsworthia 3_1_6]
gi|316922717|gb|EFV43949.1| hypothetical protein HMPREF0179_02248 [Bilophila wadsworthia 3_1_6]
Length = 354
Score = 41.0 bits (94), Expect = 0.22, Method: Composition-based stats.
Identities = 27/250 (10%), Positives = 65/250 (26%), Gaps = 13/250 (5%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
+ + + S A A + +R A + ++ G + L +
Sbjct: 2 LTGSLAVVLFITFSCAAFAAAPVKLRTAWLDEHEAFLVWYAKEKGWDKEEGLDIEMLLFS 61
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF-- 121
+ N + L G+ + N + L +
Sbjct: 62 SGMA---QLNALPAGEWVLAGTGAVPGMMGALRYGTYTIAVTNDESYTNALLLRPDSPIL 118
Query: 122 --ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
K Y ++ + ++ K + I + + + + + +
Sbjct: 119 KTKGYNKDYPEVYGHPDDVRGKTFLITTMSSPHFTLSHWLRVLGLKESDVTIKNIDQAQG 178
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+ + I W PH + G G G +V + + D P
Sbjct: 179 LA----AFDSGIGDGVCLWAPHMFFGIDKGWKVAGTPNTCGVGLPTVL-MGDKKFCDANP 233
Query: 240 N-ISRLLKNI 248
+++ L+
Sbjct: 234 ELVAKFLRVF 243
>gi|91776211|ref|YP_545967.1| ABC transport system substrate-binding protein [Methylobacillus
flagellatus KT]
gi|91710198|gb|ABE50126.1| ABC transport system substrate-binding protein [Methylobacillus
flagellatus KT]
Length = 330
Score = 41.0 bits (94), Expect = 0.22, Method: Composition-based stats.
Identities = 29/257 (11%), Positives = 72/257 (28%), Gaps = 35/257 (13%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL----GYK 56
+ +++ L + + +A P+R + W A V +E+ G
Sbjct: 10 LKQVVGATLLGASLLFAAVAEAA---PLRIGHSDWPGWVA----WQVAVEKGWFKEAGVD 62
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ + ID + + + ++ ++ + M+
Sbjct: 63 VKFDWFDYSASMNAFTAGKIDA---VTVTNGDALVTGASGAKNVMIIVTDYSNGNDMIV- 118
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
GIKS ++ K G+E G + +L+ + L+
Sbjct: 119 ----AKPGIKSLAELK-------GKKIGLETGFVIHLLLLNGLEKAGLKESDVTLVN--- 164
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPH-----PINSDLNIHYLPGGEEISGFGEASVYTVVR 231
++ + + +W+P+ Y E + +V V
Sbjct: 165 -TLTNETPQALASGDLDAIGAWQPNSGEAMKRVPGARPIYTSADEPGLIYDVLTVNPVSL 223
Query: 232 SDYLDKCPNISRLLKNI 248
S + ++ +
Sbjct: 224 SARRADWEKVVKVWDRV 240
>gi|33599082|ref|NP_886642.1| periplasmic solute-binding protein [Bordetella bronchiseptica RB50]
gi|33575128|emb|CAE30591.1| periplasmic solute-binding protein [Bordetella bronchiseptica RB50]
Length = 333
Score = 41.0 bits (94), Expect = 0.22, Method: Composition-based stats.
Identities = 32/255 (12%), Positives = 70/255 (27%), Gaps = 23/255 (9%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL 62
K +A+ ++ A VR+ + W L GY K
Sbjct: 10 KGMAIGAAALALPVAGRSWAAQAEAVRYGGSAWLGH------YPAWLAIQAGY---FKAE 60
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
+ V + S + A + + + ++ V +
Sbjct: 61 NLEVGWESFGTTSARVSALLSGNIDMAVTAAPAALAVMSRGSRHFA----IIGVPENFGR 116
Query: 123 LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ + ++L K G+ + + +L++++ + +
Sbjct: 117 VEGLIVRSQVARLEDLKGKKVGVTFASSAHLLVLNLLDQAGLKAGKDVTVLNVPAP---E 173
Query: 183 IRRDQRNNIPAVFLSWEPHP--INSDLNIHYLPGGEEISGFGEASVYT-----VVRSDYL 235
+ ++ +W P I + + L S + E V V R +L
Sbjct: 174 LPAAFQSGQIDAAAAWTPQFNAIRAMPDAKVLVDDTSFSLYKEYGVTPGPDVLVARRAFL 233
Query: 236 DKCPNISRLLKNIKF 250
DK P + F
Sbjct: 234 DKNPEAVKRFLKAYF 248
>gi|326383731|ref|ZP_08205416.1| Substrate-binding region of ABC-type glycine betaine transporter
[Gordonia neofelifaecis NRRL B-59395]
gi|326197495|gb|EGD54684.1| Substrate-binding region of ABC-type glycine betaine transporter
[Gordonia neofelifaecis NRRL B-59395]
Length = 349
Score = 41.0 bits (94), Expect = 0.22, Method: Composition-based stats.
Identities = 28/248 (11%), Positives = 64/248 (25%), Gaps = 27/248 (10%)
Query: 9 LFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTS--VILEEIL-GYKTN-IKLLAV 64
+ A S +R A + + LE+ L G IK +
Sbjct: 21 VVAAAGCAVGDGSASSGDEIRIAYQSFPSGDL---VVKNQHWLEDALPGKTVKWIKFDSG 77
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA-- 122
+ +D P AP + V + + ++A N G
Sbjct: 78 ADVNTAFVAGQVDFGAIGSAPVARGLSAPLNIGYQVAFVLDVAGDNEALVARNGTGIDSV 137
Query: 123 LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
G++ + + + + + +I+
Sbjct: 138 AGLRGRRVATAFASTAHYSLLAALKEAGVDPGEVKLID-----------------LQPQA 180
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYT-VVRSDYLDKCPNI 241
+W P + L E++ G+ ++ VV + + + P +
Sbjct: 181 SLAAWERGDVDAVYTWLPTLDELKKSGKVLVTSRELAERGQPTLDLGVVSTAFAEAEPAV 240
Query: 242 SRLLKNIK 249
+ ++
Sbjct: 241 VDAWRKVQ 248
>gi|239627743|ref|ZP_04670774.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239517889|gb|EEQ57755.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 386
Score = 41.0 bits (94), Expect = 0.22, Method: Composition-based stats.
Identities = 33/316 (10%), Positives = 63/316 (19%), Gaps = 51/316 (16%)
Query: 1 MYK----ILAVCLFLTTFSISYARDADSCTP----------------------------V 28
M K I+ L A TP +
Sbjct: 17 MKKRWISIVMAAAMLAGTLAGCAPKPVEATPAPTKATEASGDTKEAGTQAAPDTEDLPVL 76
Query: 29 RFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLE 88
+ A + + M L+ G+K A S
Sbjct: 77 KVAVMPFLNSIPIKYMIDQGLDTKNGFKIETVYFANGGAMNEALAAD---QWEVGTLSAA 133
Query: 89 KFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPG 148
+ + + +G Y L D A + + +
Sbjct: 134 AVNSLAIYGAYCIADIGHSEGGLYTLCKPDSPIAKVKGNNPSYPDVYGDAETLKGAVIAT 193
Query: 149 NEGNQRILDMIN-NNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDL 207
N G L++I K L + + + V P ++
Sbjct: 194 NTGTISHLNVIKWLEKLGLTTEDVEIVHMDFPSA--YQALMTGNCDVAALNPPTSYQAEG 251
Query: 208 NIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQ 267
+ G + V + DK + +K + +
Sbjct: 252 EGMVITSSLTNLGVPQFDSIIVSNKAFTDKRDVLVNYVKAFFEATDAL----------QA 301
Query: 268 DRQFVGR---TMLRTH 280
D + +
Sbjct: 302 DPDMAAQLLLDWYTEN 317
>gi|229826023|ref|ZP_04452092.1| hypothetical protein GCWU000182_01387 [Abiotrophia defectiva ATCC
49176]
gi|229789765|gb|EEP25879.1| hypothetical protein GCWU000182_01387 [Abiotrophia defectiva ATCC
49176]
Length = 277
Score = 41.0 bits (94), Expect = 0.22, Method: Composition-based stats.
Identities = 27/212 (12%), Positives = 59/212 (27%), Gaps = 14/212 (6%)
Query: 1 MYKI--LAVCLFLTTFSISYARDADSC---TPVRFADTGWTDIAATTAMTSVILEEILGY 55
+ K+ L + L + + T A LE+ GY
Sbjct: 6 IKKLGALVLSGILAVSLAGCGATGGAKSDDKEISIGVTPVPHQEIVKAAVVPALEKE-GY 64
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA-----ENLQGA 110
K + + + ++ Y+ + + + VA +
Sbjct: 65 KVKVVEFNDY-VQPNTAVQEGELDANYYQTTRYMENENKERKLDLVAVAEIHLEPMGLYS 123
Query: 111 KYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM--INNNKFSLKG 168
K + V ++ I D + + L + + + ++ I N + K
Sbjct: 124 KTLKDVKELKDGATIAIPNDGSNESRALALLADNGLIKLKETEELYNLTSIEENPHNFKF 183
Query: 169 FRLIEASELASFSQIRRDQRNNIPAVFLSWEP 200
+ AS + S + N A+ + P
Sbjct: 184 SEIEAASLPVTLSDVDAAVINGNYALGAGFNP 215
>gi|127514611|ref|YP_001095808.1| extracellular solute-binding protein [Shewanella loihica PV-4]
gi|126639906|gb|ABO25549.1| extracellular solute-binding protein, family 1 [Shewanella
loihica PV-4]
Length = 270
Score = 41.0 bits (94), Expect = 0.22, Method: Composition-based stats.
Identities = 16/96 (16%), Positives = 35/96 (36%), Gaps = 6/96 (6%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYKT 57
M K+ ++ S A + ++ A T T+ + + +L E+ GYK
Sbjct: 1 MLKLKSILSLAIVASALTLTSAQAEEIIKLATTTSTEN---SGLLKHLLPKFEQESGYKV 57
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP 93
+ + + +D+ M + + KF+
Sbjct: 58 QVIATGTGKALKLARQGDVDVVMTHAPAAEAKFVNE 93
>gi|289191522|ref|YP_003457463.1| molybdenum ABC transporter, periplasmic molybdate-binding protein
[Methanocaldococcus sp. FS406-22]
gi|288937972|gb|ADC68727.1| molybdenum ABC transporter, periplasmic molybdate-binding protein
[Methanocaldococcus sp. FS406-22]
Length = 262
Score = 41.0 bits (94), Expect = 0.23, Method: Composition-based stats.
Identities = 28/244 (11%), Positives = 64/244 (26%), Gaps = 14/244 (5%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP 65
+ + + +++ V A G + + EE G K
Sbjct: 11 LLIIIAIVLGCGCTQKSETKEEVIHAYVGAGMQKPMDEIGK-MFEEKYGIKVEYDYAGSG 69
Query: 66 VTFRSL-KNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
+ + K DIFM Y F LE+ L +N ++ V
Sbjct: 70 YLYSKILATKEGDIFMPGAY-----FYVGELEKKGYILKYKNFTKHIPVIVVQKE----N 120
Query: 125 IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
K+ + K G + G + K+ I + + + ++
Sbjct: 121 PKNITCLEDLGKPGIRVALGDDNIAIGRTFKKILQKAEKYDPGISEKINKNVVVKGATVK 180
Query: 185 R---DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNI 241
+ + W I + + +P + + + + + +
Sbjct: 181 QVLLYVIEGDADAAVVWRADAIENKDKVDIIPINSKYNVIKTVPIAILKTTKNKENAEKF 240
Query: 242 SRLL 245
+
Sbjct: 241 YNFV 244
>gi|260778720|ref|ZP_05887612.1| ABC-type tungstate transport system binding protein [Vibrio
coralliilyticus ATCC BAA-450]
gi|260604884|gb|EEX31179.1| ABC-type tungstate transport system binding protein [Vibrio
coralliilyticus ATCC BAA-450]
Length = 272
Score = 41.0 bits (94), Expect = 0.23, Method: Composition-based stats.
Identities = 22/140 (15%), Positives = 44/140 (31%), Gaps = 14/140 (10%)
Query: 1 MY-KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYK 56
M + F S A AD +R A T + + +L E+ GY+
Sbjct: 1 MKATTFTIAAASLAFISSSAFAADDSHHIRLAT---TTSTYHSGLLDYLLPQFEKETGYQ 57
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGY-------WYPSLEKFIAPYLEEGSIKLVAENLQG 109
++ + + +N +D+ M + + + + L +V +
Sbjct: 58 VDVIAAGTGKSLKMGENGDVDLVMTHAPKAEANFVQNGYGVLPRKLMYNDFVIVGPDADP 117
Query: 110 AKYMLAVNDVGFALGIKSYQ 129
AK + N I +
Sbjct: 118 AKVHDSHNVAEAFKHIANMN 137
>gi|209885893|ref|YP_002289750.1| ABC transporter substrate-binding protein [Oligotropha
carboxidovorans OM5]
gi|209874089|gb|ACI93885.1| ABC transporter substrate-binding protein [Oligotropha
carboxidovorans OM5]
Length = 362
Score = 41.0 bits (94), Expect = 0.23, Method: Composition-based stats.
Identities = 23/227 (10%), Positives = 52/227 (22%), Gaps = 12/227 (5%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
+ + + A + FA G + + A E+ G K
Sbjct: 18 LAVGGALAVLSGVGSSAQAADEKELVFAGFGGSLQKSLQATVIPAFEKKYGVKVVYVTGT 77
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+K + + + + E+ KL + + D
Sbjct: 78 SNQILAKVKAQRNSPQIDVIWANDTTHYQGKAEKLYAKLDPAKVPNLSQLY---DFAKDR 134
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN-NNKFSLKGFRLIEASELASFSQ 182
+ E G D+ + K + + + F++
Sbjct: 135 DGIGIVMGVQALGIEYNTKVFKEKGWAPPTSWADLWDPKYKGHVVFYNMPIGYTNLLFAK 194
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV 229
I ++ + +W + L A V +
Sbjct: 195 IADMNGGSVTNLEPAW--------NKMKELQPNVLAFVDPPAQVDAL 233
>gi|302388783|ref|YP_003824604.1| extracellular solute-binding protein [Thermosediminibacter oceani
DSM 16646]
gi|302199411|gb|ADL06981.1| extracellular solute-binding protein [Thermosediminibacter oceani
DSM 16646]
Length = 305
Score = 41.0 bits (94), Expect = 0.23, Method: Composition-based stats.
Identities = 27/252 (10%), Positives = 66/252 (26%), Gaps = 13/252 (5%)
Query: 4 ILAVCLFLTTFSISYARDA---------DSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
+L + L L F + + A V A T T + + I E+ G
Sbjct: 12 LLVLSLTLGVFLAACGQKAPSEGNLGKNSESGEVILATTTSTQDSGLLDVLIPIFEQKTG 71
Query: 55 YKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
YK I + + D+ + + + + ++ +
Sbjct: 72 YKVKIIPVGTGQALAMGEKGNADVMLVHAPEDEIELVEKGAAINRRLVMHNDFVIVGPA- 130
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
D K + K E A + +++ LD+ + ++
Sbjct: 131 --EDPAGIKNAKDAAEAFKLIAEKEALFISRGDNSGTHKKELDIWKKAGIENPSGKWYQS 188
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDY 234
+ + + + + + D + ++ S V
Sbjct: 189 TGQGMGATLDVASEKSGYTLTDR-ATYLAKKDKLHLVILKEKDGSLINIYHVMQANPDYV 247
Query: 235 LDKCPNISRLLK 246
P+ + ++
Sbjct: 248 KQSNPDAAGMIN 259
>gi|152980102|ref|YP_001354309.1| sulfonate/nitrate transport system substrate-binding protein
[Janthinobacterium sp. Marseille]
gi|151280179|gb|ABR88589.1| sulfonate/nitrate transport system substrate-binding protein
[Janthinobacterium sp. Marseille]
Length = 317
Score = 41.0 bits (94), Expect = 0.23, Method: Composition-based stats.
Identities = 33/260 (12%), Positives = 69/260 (26%), Gaps = 23/260 (8%)
Query: 14 FSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKN 73
A + VR + T T LE+ LG L V V++ +
Sbjct: 20 LFALPAHAQKAGDTVRIGYQK-SSTLITVLKTRGTLEQRLG------ALGVKVSWHEFAS 72
Query: 74 KGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAK 133
+ A + + A Q + K
Sbjct: 73 GLP--LLEALNVGAIDVSADVADTVPVFAQAAGAQLTYIAQESPSPSAQAIVVKADSNIK 130
Query: 134 YKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPA 193
+L K G + ++ + SLK +L + +
Sbjct: 131 TLADLRGKRVGFAKAAGAHYLLIAALEKAGLSLKDIQLAYLAPADGRA----AFEREAID 186
Query: 194 VFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVA 253
++ W+P + + + + G + Y + + + P++ +++ V
Sbjct: 187 AWVIWDP-FLAAVQRQSQVRVLTDGRGLADYQRYYLSSTPFAKARPDVVKVI------VD 239
Query: 254 LENEMMKLILNNKQDRQFVG 273
E K + KQ +
Sbjct: 240 ALQETGKWV---KQSPKDAA 256
>gi|303327002|ref|ZP_07357444.1| putative alkanesulfonates-binding protein [Desulfovibrio sp.
3_1_syn3]
gi|302862990|gb|EFL85922.1| putative alkanesulfonates-binding protein [Desulfovibrio sp.
3_1_syn3]
Length = 357
Score = 41.0 bits (94), Expect = 0.24, Method: Composition-based stats.
Identities = 31/295 (10%), Positives = 67/295 (22%), Gaps = 26/295 (8%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
I + + A A + P++ A G + A + + +G ++
Sbjct: 9 IFCLAVLTLFCGSRAALAAAAPVPMKTAWLGENEAFAVWYVKKHGWDREVGLDVSMLRFG 68
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+ + + L + + N + L V L
Sbjct: 69 SGKA---IVEGILAYDWAVAGCGAVPALTAALNDRLDIIAVANDESLANALYVRADSPIL 125
Query: 124 GIKS----YQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+K + +I + + K+ + + + S K R+ +
Sbjct: 126 KVKGANPAFPEIYGDRASVAKKLILCPKATSAHYLMTAWLKALGLSEKDVRVRYMDPTPA 185
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+ W P + V V Y DK P
Sbjct: 186 LG----AFFGGLGDAVALWAP-LTYEAEQKGFKAAALSNHCGVSQPVLLVANRAYADKYP 240
Query: 240 NISRLLKNIKFSVALENEM----MKLILNN---------KQDRQFVGRTMLRTHP 281
+ F + + + + L+ HP
Sbjct: 241 QRIEAFLKMYFRAVDMLRATPPENLAADYSRFFKEWTGLELTPEQAVQD-LKAHP 294
>gi|169795974|ref|YP_001713767.1| molybdate ABC transporter periplasmic substrate-binding protein
[Acinetobacter baumannii AYE]
gi|213157291|ref|YP_002319336.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Acinetobacter baumannii AB0057]
gi|215483430|ref|YP_002325647.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Acinetobacter baumannii AB307-0294]
gi|301345119|ref|ZP_07225860.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Acinetobacter baumannii AB056]
gi|301511408|ref|ZP_07236645.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Acinetobacter baumannii AB058]
gi|301596025|ref|ZP_07241033.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Acinetobacter baumannii AB059]
gi|169148901|emb|CAM86774.1| molybdate transport protein (ABC superfamily, peri_bind)
[Acinetobacter baumannii AYE]
gi|213056451|gb|ACJ41353.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Acinetobacter baumannii AB0057]
gi|213988771|gb|ACJ59070.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Acinetobacter baumannii AB307-0294]
Length = 261
Score = 41.0 bits (94), Expect = 0.24, Method: Composition-based stats.
Identities = 24/260 (9%), Positives = 48/260 (18%), Gaps = 21/260 (8%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAM--TSVILEEILGYKTN 58
+ + C L+ + V + + T A+ I EE +
Sbjct: 7 IKNLALACSVLSIGLVFNISAKAESVTV------YAAASLTNAINDLEKIYEEQHKVEVK 60
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ ++ ++ + NL G + +L
Sbjct: 61 TSYAGSSTLAKQVEAGAPADIFISADTQWMDYLQNK--KRVAANDRINLLGNRLVLITPK 118
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
K KI + + E
Sbjct: 119 GQSLNIKLDKAT--DPNKVFTGKICTGDTK-SVPVGKYAKQAFTNLGWWNRIEPKLVETE 175
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS---GFGEASVYTVVRS--- 232
V + + S E + + S
Sbjct: 176 DVRAALNFVARGECQVGIVYATDAAISKDVKVAGIFPENTHSPIIYPVGMIKKNSNSAKF 235
Query: 233 -DYLDKCPNISRLLKNIKFS 251
+L + K FS
Sbjct: 236 YQFLQSN-QAKAVFKKYGFS 254
>gi|254502741|ref|ZP_05114892.1| NLPA lipoprotein, putative [Labrenzia alexandrii DFL-11]
gi|222438812|gb|EEE45491.1| NLPA lipoprotein, putative [Labrenzia alexandrii DFL-11]
Length = 313
Score = 41.0 bits (94), Expect = 0.25, Method: Composition-based stats.
Identities = 39/276 (14%), Positives = 67/276 (24%), Gaps = 35/276 (12%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIA-ATTAMTSVILEEILGYKTNI 59
M K L F T S A V D A TA E G +
Sbjct: 1 MKKTLLSAAFAATLFASAPVQAAEKLTVLMDWFTNPDHAPLITAQAMGFFEAE-GLDVEL 59
Query: 60 KLLAVPVTFRS-LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
A P + DI + Y + + LV L L V
Sbjct: 60 IEPADPAMPPKLVAAGQADIAISYQPTLHAQIEEGLPLKWIGTLVETPL----NSLIVLK 115
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM-INNNKFSLKGFRLIEASEL 177
G +K + G + + R +D+ +++ + F L +
Sbjct: 116 DGPIKELKDLKGKKIGFSVSGFE----DAMLGQMLRSVDLSVDDVELINVNFALSPSLMS 171
Query: 178 ASFSQIRRDQRN----------NIPAVFLSWEP-----HPINSDLNIHYLPGGEEISGFG 222
+ RN F E + ++
Sbjct: 172 GQVDAVIGAYRNFELTQIEIEGKEGKAFYPEENGVPIFDELIYVVHKDKTDDPRYAKFMA 231
Query: 223 EASVYTV--------VRSDYLDKCPNISRLLKNIKF 250
T+ + +++ PN++ L +
Sbjct: 232 AIEAATIFLTNHPDEAWNAFIEAYPNLNDELNKRAW 267
>gi|330874198|gb|EGH08347.1| taurine ABC transporter, periplasmic binding protein [Pseudomonas
syringae pv. morsprunorum str. M302280PT]
Length = 325
Score = 41.0 bits (94), Expect = 0.26, Method: Composition-based stats.
Identities = 29/251 (11%), Positives = 67/251 (26%), Gaps = 18/251 (7%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
K+ LT S++ A A D + + + Y+ K
Sbjct: 1 MKLHFSLRLLTALSLTGATFLAQAADFTVAYQTTVDP-------AKVAQADNAYE---KA 50
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+ +R N I ++ + L +++A
Sbjct: 51 TDSKIAWRKFDNGADVITAIASGDVQIGYLGSSPFTAAATRK---LPVETFLIATQIGAA 107
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
+ ++L K + + G+ +L + + ++ +
Sbjct: 108 EALVARNGSGINAPQDLIGKKIAVPFVSTGHYSLLAALKHWNIDPTRVTILNLAPP---- 163
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I + W+P + L E++ G + +VR D+ K P
Sbjct: 164 AIAASWKRGDIDATYVWDPALGVAKETGKVLITSGELAKVGAPTFDAWIVRKDFASKHPE 223
Query: 241 ISRLLKNIKFS 251
+ + +
Sbjct: 224 VVKAFAKVTLD 234
>gi|52144935|ref|YP_081895.1| lipoprotein ABC transporter substrate-binding protein [Bacillus
cereus E33L]
gi|51978404|gb|AAU19954.1| ABC transporter, substrate-binding protein; probable NLPA
lipoprotein [Bacillus cereus E33L]
Length = 280
Score = 41.0 bits (94), Expect = 0.26, Method: Composition-based stats.
Identities = 39/256 (15%), Positives = 74/256 (28%), Gaps = 20/256 (7%)
Query: 1 MYKILAVCL--FLTTFSISYARDADSC-TPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M KILA L + ++S DA + VR TG A + E+ G K
Sbjct: 1 MKKILAFALSAIVGISALSGCSDAGTKEKTVRIGVTGTDGNAW--EIVKEKAEKE-GIKV 57
Query: 58 NIKLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ + T ++L + I++ LE+F + + + + Y
Sbjct: 58 KLVEFSDYTTPNKALADGDIELNSFQHIAFLEQFKKEHKLDITAVGTTQIAPMGLYSEKH 117
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPG------NEGNQRILDMINNNKFSLKGFR 170
+ A G + G I N LK
Sbjct: 118 KKANEIPDGSEIAIPNDPTNQARALKLLDAAGLLKLKKDFGLFGDPSGIAENPKKLKITP 177
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
+I + NN A +P + +L + + +++
Sbjct: 178 VIAQQTPRVLKDVAASVINNGVAGQAGLDP-----AKDPIFLEDPKNENAKPYINIFAAR 232
Query: 231 RSDYLDKCPNISRLLK 246
D P + ++++
Sbjct: 233 TKD--KDDPTLKKVIE 246
>gi|311894738|dbj|BAJ27146.1| putative taurine ABC transporter substrate-binding protein
[Kitasatospora setae KM-6054]
Length = 347
Score = 41.0 bits (94), Expect = 0.26, Method: Composition-based stats.
Identities = 30/251 (11%), Positives = 68/251 (27%), Gaps = 30/251 (11%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEIL-GYKTN-IKLLAVPVTFRSLKNKGIDIFMGYWY 84
VR A + +LE+ L +K + ++ +D+ +
Sbjct: 41 TVRIAYQEIPNADLVVK-DKRLLEQALPDADIKWVKFDSGGDVNTAVLAGSVDLGLAGSS 99
Query: 85 PSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYG 144
P + AP + L V+D+ + +L K
Sbjct: 100 PVTKGLSAPLNIPYKV-------------LWVHDLIGENEALVARGGITGVGQLVGKKVA 146
Query: 145 IEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPIN 204
G+ + +L + +I+ + + + +W P
Sbjct: 147 TPFGSTSHYSLLAALQAAGVDPAKVNVIDLQPQDALA----AWKRGDIDAAYTWTPTLTE 202
Query: 205 SDLNIHYLPGGEEISGFGEASVYT-VVRSDYLDKCPNISRLLKNIKFSVALENEMMKLIL 263
+ + L +++ G+ + VV + + P I A + +
Sbjct: 203 LEKDGKVLVTSRQLAEQGKRTADLGVVTNAFAQAHPEIV---------TAWLKAEDQAVK 253
Query: 264 NNKQDRQFVGR 274
K D +
Sbjct: 254 LAKSDPEQAAA 264
>gi|120405432|ref|YP_955261.1| glycine betaine ABC transporter substrate-binding protein
[Mycobacterium vanbaalenii PYR-1]
gi|119958250|gb|ABM15255.1| Substrate-binding region of ABC-type glycine betaine transport
system [Mycobacterium vanbaalenii PYR-1]
Length = 273
Score = 40.6 bits (93), Expect = 0.26, Method: Composition-based stats.
Identities = 33/261 (12%), Positives = 70/261 (26%), Gaps = 17/261 (6%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPS 86
+ + + + L G ++++ P+ L I + G+
Sbjct: 19 SIPVGAPADPESQLIAHLYAAAL-RFYGNPAHVQVTDAPL--DLLDAGEIRVVPGFTGQL 75
Query: 87 LEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE 146
L++F +++ L +A D A K + + + I
Sbjct: 76 LQRFAPDASARADVQVYRALLSVLPEGVAAGDYTTAAEDKPAVAVTERTADEWGGRDVIA 135
Query: 147 PGNEGNQRILDMI--NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPIN 204
+ + + + S+ RL EA A + R V +W
Sbjct: 136 VTRRCDDVSVGAVGSTAHPLSVGTCRLPEARRFADAEAMFEALRAGQLDV--AWTTTAAP 193
Query: 205 SDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC----PNISRLLKNIKFSVALENEMMK 260
+ + + E V R++ + I+ +L A +
Sbjct: 194 DVPSEVVVLSDKTALIRAENLVPLYRRNELTESQVLALNEIAGVLDAGSL--ADMRRQVA 251
Query: 261 LILNNKQDRQFVGRTMLRTHP 281
+ V L HP
Sbjct: 252 ----EGVEPGLVAGQWLDEHP 268
>gi|332163283|ref|YP_004299860.1| taurine transporter substrate binding subunit [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|318607768|emb|CBY29266.1| taurine-binding periplasmic protein TauA [Yersinia enterocolitica
subsp. palearctica Y11]
gi|325667513|gb|ADZ44157.1| taurine transporter substrate binding subunit [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|330861880|emb|CBX72050.1| taurine-binding periplasmic protein [Yersinia enterocolitica
W22703]
Length = 342
Score = 40.6 bits (93), Expect = 0.27, Method: Composition-based stats.
Identities = 10/67 (14%), Positives = 18/67 (26%), Gaps = 1/67 (1%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I + W P L ++ +G ++ VVR D+ P
Sbjct: 174 AIAAAWQRGDIDGAYVWAPAVNELAKTGTVLTDSAQVGQWGAPTLDVWVVRKDFAQAHPE 233
Query: 241 ISRLLKN 247
+
Sbjct: 234 VVTAFAR 240
>gi|240140150|ref|YP_002964627.1| alkanesulfonate transport protein, periplasmic-binding subunit, ABC
superfamily [Methylobacterium extorquens AM1]
gi|240010124|gb|ACS41350.1| alkanesulfonate transport protein, periplasmic-binding subunit, ABC
superfamily [Methylobacterium extorquens AM1]
Length = 320
Score = 40.6 bits (93), Expect = 0.27, Method: Composition-based stats.
Identities = 35/280 (12%), Positives = 76/280 (27%), Gaps = 39/280 (13%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
L + + ++ A + +R ++A+ S++ E+ +T +K L V
Sbjct: 9 LVLAGLTLSLALGCNPAAAEESTLRIGYQR------SSALISLLREDAT-LETALKPLGV 61
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
V++ + M A + + A N +
Sbjct: 62 TVSWHEFTSGLP--IMEALNVGRIDVSADVADTVPVFAQAANAKITYIAQEAASPEAQAI 119
Query: 125 IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
+ K +L + + G + +L + K + R
Sbjct: 120 LVPGDSPLKTVADLKGRKVAVTKGAGSHYLLLAALKAEGLPFKSINPAYLTPADG----R 175
Query: 185 RDQRNNIPAVFLSWEP--HPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+++W+P L G +S + + Y +K ++
Sbjct: 176 SALSGGSVDAWVAWDPFLSAAQIQAGARILRDGTGLSAYKRYY---LASDAYAEKRADVL 232
Query: 243 RLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPD 282
LL V E T ++ +PD
Sbjct: 233 TLL------VTKLRE---------------AGTWVKANPD 251
>gi|237747577|ref|ZP_04578057.1| ABC-type molybdate transport system substrate-binding protein
[Oxalobacter formigenes OXCC13]
gi|229378939|gb|EEO29030.1| ABC-type molybdate transport system substrate-binding protein
[Oxalobacter formigenes OXCC13]
Length = 253
Score = 40.6 bits (93), Expect = 0.27, Method: Composition-based stats.
Identities = 20/201 (9%), Positives = 48/201 (23%), Gaps = 18/201 (8%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFAD-TGWTDIAATTAMTSVILEEILGYKTNI 59
M K + + F + S V A + + +++ E+ G K +
Sbjct: 1 MKKCFRLPSLIFGFLLLSVSAFVSAETVHVAVAANFVEP--LKNISAQ-FEKTTGNKVMV 57
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND- 118
A + +KN P A ++ + G+++ A+
Sbjct: 58 TSGATGKLYAQIKNG---------APYDILLAADAKTPAKLESEDAIVPGSRFTYAIGKL 108
Query: 119 --VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
G + K+ + L + +
Sbjct: 109 ALWSAKPGYVDNKGEILKKQPFNHIAIASPKLAPYGLAAQQTLEK--MGLWQTMQAKIVQ 166
Query: 177 LASFSQIRRDQRNNIPAVFLS 197
+ Q + + +
Sbjct: 167 GENIGQTYQFVASGNAELGFV 187
>gi|218531650|ref|YP_002422466.1| aliphatic sulfonates family ABC transporter periplsmic
ligand-binding protein [Methylobacterium
chloromethanicum CM4]
gi|218523953|gb|ACK84538.1| aliphatic sulfonates family ABC transporter, periplsmic
ligand-binding protein [Methylobacterium
chloromethanicum CM4]
Length = 320
Score = 40.6 bits (93), Expect = 0.28, Method: Composition-based stats.
Identities = 36/280 (12%), Positives = 76/280 (27%), Gaps = 39/280 (13%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
L + + ++ A + +R ++A+ S++ E+ +T +K L V
Sbjct: 9 LVLAGLTLSLALGCNPAAAEESTLRIGYQR------SSALISLLREDAT-LETALKPLGV 61
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
V++ + M A + + A N +
Sbjct: 62 TVSWHEFTSGLP--IMEALNVGRIDVSADVADTVPVFAQAANAKITYIAQEAASPEAQAI 119
Query: 125 IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
+ K +L + + G + +L + K + R
Sbjct: 120 LVPGDSPLKTVADLKGRKVAVTKGAGSHYLLLAALKAEGLPFKSITPAYLTPADG----R 175
Query: 185 RDQRNNIPAVFLSWEP--HPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+L+W+P L G +S + + Y +K ++
Sbjct: 176 SALSGGSVDAWLAWDPFLSAAQIQAGARILRDGTGLSAYKRYY---LASDAYAEKRADVL 232
Query: 243 RLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPD 282
LL V E T ++ +PD
Sbjct: 233 TLL------VTKLRE---------------AGTWVKANPD 251
>gi|206974339|ref|ZP_03235256.1| putative ABC transporter, substrate-binding protein [Bacillus
cereus H3081.97]
gi|206747579|gb|EDZ58969.1| putative ABC transporter, substrate-binding protein [Bacillus
cereus H3081.97]
Length = 280
Score = 40.6 bits (93), Expect = 0.28, Method: Composition-based stats.
Identities = 39/256 (15%), Positives = 74/256 (28%), Gaps = 20/256 (7%)
Query: 1 MYKILAVCL--FLTTFSISYARDADSC-TPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M KILA L + ++S DA + VR TG A + E+ G K
Sbjct: 1 MKKILAFALSAIVGISALSGCSDAGTKEKTVRIGVTGTDGNAW--EIVKEKAEKE-GIKV 57
Query: 58 NIKLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ + T ++L + I++ LE+F + + + + Y
Sbjct: 58 KLVEFSDYTTPNKALADGDIELNSFQHIAFLEQFKKEHKLDITAVGTTQIAPMGLYSEKH 117
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPG------NEGNQRILDMINNNKFSLKGFR 170
+ A G + G I N LK
Sbjct: 118 KKANEIPDGSEIAIPNDPTNQARALKLLDAAGLLKLKKDFGLFGDPSGIAENPKKLKITP 177
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
+I + NN A +P + +L + + +++
Sbjct: 178 VIAQQTPRVLKDVAASVINNGVAGQAGLDP-----AKDPIFLEDPKNENAKPYINIFAAR 232
Query: 231 RSDYLDKCPNISRLLK 246
D P + ++++
Sbjct: 233 TKD--KDDPTLKKVIE 246
>gi|163757525|ref|ZP_02164614.1| taurine ABC transporter, periplasmic taurine-binding protein
[Hoeflea phototrophica DFL-43]
gi|162285027|gb|EDQ35309.1| taurine ABC transporter, periplasmic taurine-binding protein
[Hoeflea phototrophica DFL-43]
Length = 330
Score = 40.6 bits (93), Expect = 0.28, Method: Composition-based stats.
Identities = 42/313 (13%), Positives = 84/313 (26%), Gaps = 43/313 (13%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFAD-----TGWTDIAATTAMTSVILEEILGY 55
M + L ++ A + + AT + +E LG
Sbjct: 1 MKIASRMSSLLAGIAMVAVASAAKAEEITVGYFLEWPMPFQFAKATG-----LYDEALGM 55
Query: 56 KTNIKLLAVPVTFR-SLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
K N K ++ + + I + P ++LQ A +
Sbjct: 56 KVNWKSFDAGTAMSAAMASGDVQISVSQGVP----------PFVVATSAGQDLQIADIAV 105
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
ND + + + + KEL K G+ G + L + + +++
Sbjct: 106 VYNDNDNCVVKEELEITKENAKELEGKKAGVPIGTAAHYGFLKQMEYFGVDVSTMEVVDM 165
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSD 233
+ + + W + + L G E G + T V +
Sbjct: 166 APPDGAA----AFAQGSLDMVCGWGGSLRRMVEHGNVLLTGAEKDEIGISVYDVTSVPAS 221
Query: 234 YLDKCPNISRLLKNIKFSVALEN--------EMMKLILNN-KQDRQFVGR-----TMLRT 279
+ + ++ + A N EM+ +I + +
Sbjct: 222 FAAENSDVLAKFLKV---TADMNAKWLTDSAEMLPVIAKDAGMSEEDTAATLAGFQFPTV 278
Query: 280 HPDLLKNWLIGVT 292
L WL G T
Sbjct: 279 EDQLSDKWLGGAT 291
>gi|170728963|ref|YP_001762989.1| NMT1/THI5-like domain-containing protein [Shewanella woodyi ATCC
51908]
gi|169814310|gb|ACA88894.1| NMT1/THI5 like domain protein [Shewanella woodyi ATCC 51908]
Length = 318
Score = 40.6 bits (93), Expect = 0.28, Method: Composition-based stats.
Identities = 23/300 (7%), Positives = 69/300 (23%), Gaps = 41/300 (13%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M + + A W S + +G +
Sbjct: 1 MLRFTVSLFISLLLV--ACSPKPVTKTITIAINPWPGYELLYLAESKGFFKQVGLDIKLS 58
Query: 61 LLAVPVTFRSLK-NKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
A + + +D F +++ + + ++ + ++
Sbjct: 59 QTATLSDAQRAYISGRVDGFASTIVEAVQA--QEFGGDPLNIVLLADYSNGGDLIV---- 112
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+ K +L + G E + G + + SL ++ + +
Sbjct: 113 --------SHEDFKTLNQLKGQKVGCEVSSLGIYILARALAVYDMSLDDVEIVNMEQGNA 164
Query: 180 FSQIRRDQRNNIPAVFLSWEP-------------HPINSDLNIHYLPGGEEISGFGEASV 226
+ + +++ P H + + I
Sbjct: 165 L----QALNSGHIDAMVTYPPYSFEILNSTSQKSHKVFTTAEIPNEILDTVSFSQNVIKA 220
Query: 227 YTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKL---ILNNKQDRQFVGRTMLRTHPDL 283
+ L+ ++M I ++ + + L ++P+
Sbjct: 221 NPDLVPKLQQAWQLAYDYLEQ---HPDEAIQLMAERELISVDEFSQS-LADIYLLSNPEQ 276
>gi|323164737|gb|EFZ50532.1| D-methionine-binding lipoprotein metQ [Shigella sonnei 53G]
Length = 255
Score = 40.6 bits (93), Expect = 0.28, Method: Composition-based stats.
Identities = 20/238 (8%), Positives = 56/238 (23%), Gaps = 19/238 (7%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
+ + ++ + + + +E G + + + N
Sbjct: 26 QSSSDAKHIKVGVINGAEQDV-AEVAKKVAKEKYGLDVELVGFSGSLLPNDATN---HGE 81
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
+ F+ + KLVA G++ IK+ I +
Sbjct: 82 LDANVFQHRPFLEQDNQAHGYKLVAV-----GNTFVFPMAGYSKKIKTVAQIKEGATVAI 136
Query: 140 AKIYGIEPGNEGNQRILDMI---NNNKFSLKGFRLIEASELASFSQIRRD-----QRNNI 191
+ +I + + ++ +
Sbjct: 137 PNDPTNLGRALLLLQKEKLITLKEGKGLLPTALDITDNPRHLQIMELEGAQLPRVLDDPK 196
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
V + + + L+ + E V +V + N+ L++ +
Sbjct: 197 VDVAIISTTYIQQTGLSPVHDSVFIEDKNSP--YVNILVAREDNKNAENVKEFLQSYQ 252
>gi|123444123|ref|YP_001008093.1| taurine transporter substrate binding subunit [Yersinia
enterocolitica subsp. enterocolitica 8081]
gi|122091084|emb|CAL13967.1| putative taurine-binding periplasmic protein precursor [Yersinia
enterocolitica subsp. enterocolitica 8081]
Length = 318
Score = 40.6 bits (93), Expect = 0.28, Method: Composition-based stats.
Identities = 10/67 (14%), Positives = 18/67 (26%), Gaps = 1/67 (1%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I + W P L ++ +G ++ VVR D+ P
Sbjct: 150 AIAAAWQRGDIDGAYVWAPAVNELAKTGTVLTDSAQVGQWGAPTLDVWVVRKDFAQAHPE 209
Query: 241 ISRLLKN 247
+
Sbjct: 210 VVTAFAR 216
>gi|82779516|ref|YP_405865.1| cytoplasmic membrane lipoprotein-28 [Shigella dysenteriae Sd197]
gi|309787571|ref|ZP_07682183.1| D-methionine-binding lipoprotein metQ [Shigella dysenteriae 1617]
gi|81243664|gb|ABB64374.1| lipoprotein-28 [Shigella dysenteriae Sd197]
gi|308925149|gb|EFP70644.1| D-methionine-binding lipoprotein metQ [Shigella dysenteriae 1617]
Length = 272
Score = 40.6 bits (93), Expect = 0.28, Method: Composition-based stats.
Identities = 20/238 (8%), Positives = 55/238 (23%), Gaps = 19/238 (7%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
+ + ++ + + + +E G + + + N
Sbjct: 26 QSSSDAKHIKVGVINGAEQDV-AEVAKKVAKEKYGLDVELVGFSGSLLPNDATN---HGE 81
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
F+ + KLVA G++ IK+ I +
Sbjct: 82 PDANVFQHRPFLEQDNQAHGYKLVAV-----GNTFVFPMAGYSKKIKTVAQIKEGATVAI 136
Query: 140 AKIYGIEPGNEGNQRILDMI---NNNKFSLKGFRLIEASELASFSQIRRD-----QRNNI 191
+ +I + + ++ +
Sbjct: 137 PNDPTNLGRALLLLQKEKLITLKEGKGLLPTALDITDNPRHLQIMELEGAQLPRVLDDPK 196
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
V + + + L+ + E V +V + N+ L++ +
Sbjct: 197 VDVAIISTTYIQQTGLSPVHDSVFIEDKNSP--YVNILVAREDNKNAENVKEFLQSYQ 252
>gi|238783147|ref|ZP_04627173.1| Taurine-binding periplasmic protein [Yersinia bercovieri ATCC
43970]
gi|238715943|gb|EEQ07929.1| Taurine-binding periplasmic protein [Yersinia bercovieri ATCC
43970]
Length = 342
Score = 40.6 bits (93), Expect = 0.28, Method: Composition-based stats.
Identities = 10/67 (14%), Positives = 18/67 (26%), Gaps = 1/67 (1%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I + W P L ++ +G ++ VVR D+ P
Sbjct: 174 AIAAAWQRGDIDGAYVWAPAVNELAKTGTVLTDSAQVGQWGAPTLDVWVVRKDFAQAHPE 233
Query: 241 ISRLLKN 247
+
Sbjct: 234 VVTAFAR 240
>gi|325290613|ref|YP_004266794.1| aliphatic sulfonates family ABC transporter, periplasmic
ligand-binding protein [Syntrophobotulus glycolicus DSM
8271]
gi|324966014|gb|ADY56793.1| aliphatic sulfonates family ABC transporter, periplasmic
ligand-binding protein [Syntrophobotulus glycolicus DSM
8271]
Length = 336
Score = 40.6 bits (93), Expect = 0.29, Method: Composition-based stats.
Identities = 36/291 (12%), Positives = 74/291 (25%), Gaps = 44/291 (15%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTP----------------VRFADTGWTDIAATTAM 44
M KI+ L + A V+F M
Sbjct: 1 MKKIIIGLLLSMLILSAVATGCAKKETPENSAGQTVNLPAPKVVKFGVQPSLQPPHIANM 60
Query: 45 TSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA 104
E Y T +L I G + + +
Sbjct: 61 KGFFTEIETKYNTKFEL--------------ISFASGGPENNALAANEISWAQYGMAPAI 106
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKF 164
++ A ML D+ I S + I G + G++ +L +
Sbjct: 107 VGMEKAGGMLVAIDILEQTAIISDKSINTVADLKGKTVAFPGKGSQQYPLMLKALEGAGL 166
Query: 165 SLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEA 224
L++ + + +++W+PH + + +
Sbjct: 167 KEDDVVLLKMDASN----MSTALEKGEISAYIAWDPHTTKAISSGAGKILVKAEEVMPLK 222
Query: 225 SVY-----TVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQ 270
+ VVR D+ D+ P+++ + A+ ++ N +
Sbjct: 223 EGHYLGEGVVVRKDFADEYPDLTEDIVK-----AIMKANDYIVDNLSETPA 268
>gi|226360716|ref|YP_002778494.1| hypothetical protein ROP_13020 [Rhodococcus opacus B4]
gi|226239201|dbj|BAH49549.1| hypothetical protein [Rhodococcus opacus B4]
Length = 342
Score = 40.6 bits (93), Expect = 0.29, Method: Composition-based stats.
Identities = 29/282 (10%), Positives = 68/282 (24%), Gaps = 35/282 (12%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILE---EILGYKTNIKLL 62
+ + + A D+ S +RFA WT T + E E G +
Sbjct: 15 VIVVSALSVLTGCAGDSQSDDTIRFA-LDWTPNTNHTGLFVAQQEGWFEDAGLDVQVLPY 73
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
+ + + + + A + + G +AV
Sbjct: 74 NDTSPDTLVDAGNAEFGVSFQSSATFSKAAGAQTTSVMAPLQHWATG----IAVKADRAD 129
Query: 123 LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ ++L KIY +G + + +I N+ + + +
Sbjct: 130 IT---------RPRDLDGKIYAGFADPDGEETLKQIIRNDGGKGEFTTVTLG------TS 174
Query: 183 IRRDQRNNIPAV---FLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+ F WE + ++ ++ P
Sbjct: 175 AYEAVYSGTADFTVSFFGWEGIEAEHRGTPMRYFHYTDFGFPDAYALVIEGNEQWMADHP 234
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHP 281
+R + + + ++ +P
Sbjct: 235 EQARKF---------VQALQRGYQFAADRPDEAAQMLIDANP 267
>gi|239814867|ref|YP_002943777.1| NMT1/THI5 like domain protein [Variovorax paradoxus S110]
gi|239801444|gb|ACS18511.1| NMT1/THI5 like domain protein [Variovorax paradoxus S110]
Length = 339
Score = 40.6 bits (93), Expect = 0.29, Method: Composition-based stats.
Identities = 31/294 (10%), Positives = 75/294 (25%), Gaps = 37/294 (12%)
Query: 1 MYKILAVCLFLTTFSI----------SYARDADSCTPVRFADTGWTDIAATTAMTSVILE 50
M K+L L ++ + + A V W + L
Sbjct: 1 MKKLLPSLLAISVLAALASFAIAPAQAQADKPKDKDKVTL-MLNW---YLYSEHAPFFLG 56
Query: 51 EILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGA 110
G+ + + +G + F Y++ ++ A
Sbjct: 57 REKGF-----YADEGIELEIQEGRGSAVTAQAVAAKSATF--GYIDVTTMIKAAAKGAPL 109
Query: 111 KYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
K + V + + K K++ K + PG+ +Q + N + +
Sbjct: 110 KSTGVLFQVSPMSVMGFSEKNIKVPKDIIGKTVAVTPGDSMSQMWPLFLKVNNIKPEQVK 169
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIH-YLPGGEEISGFGEASVY-- 227
++ N + L + + + G +
Sbjct: 170 IVSGDGQTKL----NAVINGQADLLLGYVMDQAIKLQDATGKPVTPIRFADSGVNQISSG 225
Query: 228 TVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHP 281
+ + L + P++ + K ++ + ML+ +P
Sbjct: 226 IIANKNLLAENPDLVKRF---------MRASTKAAEAAEKSPEAAVDAMLKANP 270
>gi|163852824|ref|YP_001640867.1| aliphatic sulfonate ABC transporter periplasmic ligand-binding
protein [Methylobacterium extorquens PA1]
gi|163664429|gb|ABY31796.1| aliphatic sulfonates family ABC transporter, periplsmic
ligand-binding protein [Methylobacterium extorquens PA1]
Length = 320
Score = 40.6 bits (93), Expect = 0.30, Method: Composition-based stats.
Identities = 35/280 (12%), Positives = 76/280 (27%), Gaps = 39/280 (13%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
L + + ++ A + +R ++A+ S++ E+ +T +K L V
Sbjct: 9 LVLAGLTLSLALGCNPAAAEESTLRIGYQR------SSALISLLREDAT-LETALKPLGV 61
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
V++ + M A + + A N +
Sbjct: 62 TVSWHEFTSGLP--IMEALNVGRIDVSADVADTVPVFAQAANAKITYIAQEAASPEAQAI 119
Query: 125 IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
+ K +L + + G + +L + K + R
Sbjct: 120 LVPGDSPLKTVADLKGRKVAVTKGAGSHYLLLAALKAEGLPFKSINPAYLTPADG----R 175
Query: 185 RDQRNNIPAVFLSWEP--HPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+++W+P L G +S + + Y +K ++
Sbjct: 176 SALSGGSVDAWVAWDPFLSAAQIQAGARILRDGTGLSAYKRYY---LASDAYAEKRADVL 232
Query: 243 RLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPD 282
LL V E T ++ +PD
Sbjct: 233 TLL------VTKLRE---------------AGTWVKANPD 251
>gi|238797258|ref|ZP_04640759.1| Taurine-binding periplasmic protein [Yersinia mollaretii ATCC
43969]
gi|238718895|gb|EEQ10710.1| Taurine-binding periplasmic protein [Yersinia mollaretii ATCC
43969]
Length = 342
Score = 40.6 bits (93), Expect = 0.30, Method: Composition-based stats.
Identities = 10/67 (14%), Positives = 18/67 (26%), Gaps = 1/67 (1%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I + W P L ++ +G ++ VVR D+ P
Sbjct: 174 AIAAAWQRGDIDGAYVWAPAVNELAKTGTVLTDSAQVGQWGAPTLDVWVVRKDFAQAHPE 233
Query: 241 ISRLLKN 247
+
Sbjct: 234 VVTAFAR 240
>gi|74313980|ref|YP_312399.1| lipoprotein-28 [Shigella sonnei Ss046]
gi|73857457|gb|AAZ90164.1| lipoprotein-28 [Shigella sonnei Ss046]
Length = 255
Score = 40.6 bits (93), Expect = 0.30, Method: Composition-based stats.
Identities = 20/238 (8%), Positives = 56/238 (23%), Gaps = 19/238 (7%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
+ + ++ + + + +E G + + + N
Sbjct: 26 QSSSDAKHIKVGVINGAEQDV-AEVAKKVAKEKYGLDVELVGFSGSLLPNDATN---HGE 81
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
+ F+ + KLVA G++ IK+ I +
Sbjct: 82 LDANVFQHRPFLEQDNQAHGYKLVA-----LGNTFVFPMAGYSKKIKTVAQIKEGATVAI 136
Query: 140 AKIYGIEPGNEGNQRILDMI---NNNKFSLKGFRLIEASELASFSQIRRD-----QRNNI 191
+ +I + + ++ +
Sbjct: 137 PNDPTNLGRALLLLQKEKLITLKEGKGLLPTALDITDNPRHLQIMELEGAQLPRVLDDPK 196
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
V + + + L+ + E V +V + N+ L++ +
Sbjct: 197 VDVAIISTTYIQQTGLSPVHDSVFIEDKNSP--YVNILVAREDNKNAENVKEFLQSYQ 252
>gi|229821152|ref|YP_002882678.1| Substrate-binding region of ABC-type glycine betaine transport
system [Beutenbergia cavernae DSM 12333]
gi|229567065|gb|ACQ80916.1| Substrate-binding region of ABC-type glycine betaine transport
system [Beutenbergia cavernae DSM 12333]
Length = 336
Score = 40.6 bits (93), Expect = 0.31, Method: Composition-based stats.
Identities = 9/90 (10%), Positives = 24/90 (26%), Gaps = 13/90 (14%)
Query: 208 NIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK--FSVALENEMMKLILNN 265
+ + ++ ++ + +D + P + L + E+ K + +
Sbjct: 55 DQALVVLEDDQGLQTADNIVPAIHADSAE--PALVAALDAVSAALDTEQLIELNKAVDID 112
Query: 266 KQDRQFVGRTMLRTHPDLLKNWLIGVTTFD 295
+Q GV D
Sbjct: 113 RQTSAQAAEAW-------WDA--SGVEITD 133
>gi|270260858|ref|ZP_06189131.1| lipoprotein 28 family protein [Serratia odorifera 4Rx13]
gi|270044342|gb|EFA17433.1| lipoprotein 28 family protein [Serratia odorifera 4Rx13]
Length = 270
Score = 40.6 bits (93), Expect = 0.31, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 38/130 (29%), Gaps = 9/130 (6%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
+ F T ++ ++ + + + +E G + + +
Sbjct: 8 TAVMAAFAATLALQGCDKPVDQNLIKVGVINGAEQDV-AEVAKQVAKEKYGLEVELVGFS 66
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+ +KG + F+ ++ KLVA G++
Sbjct: 67 GSLLPNDATDKG---ELDANVFQHRPFLEQQNKDHGYKLVAV-----GNTFVFPMAGYSK 118
Query: 124 GIKSYQDIAK 133
IKS +++
Sbjct: 119 KIKSLKELQD 128
>gi|317487165|ref|ZP_07945966.1| hypothetical protein HMPREF0179_03327 [Bilophila wadsworthia 3_1_6]
gi|316921566|gb|EFV42851.1| hypothetical protein HMPREF0179_03327 [Bilophila wadsworthia 3_1_6]
Length = 358
Score = 40.6 bits (93), Expect = 0.32, Method: Composition-based stats.
Identities = 35/284 (12%), Positives = 67/284 (23%), Gaps = 20/284 (7%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMT---SVILEEILGYKTN 58
+ L + A S V+ W D T M ++ G
Sbjct: 3 KRFLGIMAAALCVLNLTVGSAFSADLVKVPTA-WLDEHETFLMWYAKEKGWDKEAGLDIE 61
Query: 59 IKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+KL P +L P + SI A N + V
Sbjct: 62 MKLFNSGPDILNALPAGEWRFAAVGALP---AMLGNLRYGTSIIAQANNEAALCTSVVVR 118
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
+K + + G ++ L +
Sbjct: 119 ADSPIAKVKGWNKDYPEVYGSPETVRGKTFLATTLTSSHYALSTWLNVLGLKDSDVVIKN 178
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDK 237
SQ+ NNI W PH + G+ + + + + Y +
Sbjct: 179 MDQSQVVGAFENNIGDGIAIWAPHTFIVQEKGGVVFAGDIVHCKKSNPIVLIADTKYAEA 238
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHP 281
P+++ + M+ + K + + +
Sbjct: 239 HPDVAAKF---------LSVYMRAVDLMKNTPP---KQFVEEYQ 270
>gi|227494341|ref|ZP_03924657.1| aliphatic sulfonate ABC superfamily ATP binding cassette
transporter substrate-binding protein [Actinomyces
coleocanis DSM 15436]
gi|226832075|gb|EEH64458.1| aliphatic sulfonate ABC superfamily ATP binding cassette
transporter substrate-binding protein [Actinomyces
coleocanis DSM 15436]
Length = 339
Score = 40.6 bits (93), Expect = 0.32, Method: Composition-based stats.
Identities = 32/285 (11%), Positives = 68/285 (23%), Gaps = 42/285 (14%)
Query: 5 LAVCLFLTTFSISYARDADSCTP----------VRFADTGWTDIAATTAMTS-VILEEIL 53
A L+ + V F + A A+ + L E
Sbjct: 9 FAAVAALSMGMAACGGTDAPADKAAEKPMEVMDVNFGYIPDLNGTALIAIANDQGLWEKH 68
Query: 54 GYKTNIKLLAVPVTF-RSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKY 112
G N+K ++L K +D I + A+
Sbjct: 69 GLNVNLKTFTNGPLQIQALGTKDLDYGYIGNGAFWLPASGKADMACLIATSQADRVIAQP 128
Query: 113 MLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ K K+L K G+ G G+ + + ++ +
Sbjct: 129 GI------------------KDIKDLKGKKVGVPEGTSGDTILTLALEKAGMTIDDIERV 170
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEP---HPINSDLNIHYLPGGEEISGFGEASVYTV 229
+ W P ++ L ++ V
Sbjct: 171 PMDPG----TVVSAFSAGQIDAAGLWYPMVDTIKKQVPDLVELAEDKDFEDQLAFPSAIV 226
Query: 230 VRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGR 274
+R + P +++ + + + A + N + + V
Sbjct: 227 MRKGLDKENPELAKRV-QMVLTEA----LDFRAENGDKTVELVAA 266
>gi|229028154|ref|ZP_04184296.1| hypothetical protein bcere0028_2850 [Bacillus cereus AH1271]
gi|228733172|gb|EEL84012.1| hypothetical protein bcere0028_2850 [Bacillus cereus AH1271]
Length = 280
Score = 40.6 bits (93), Expect = 0.34, Method: Composition-based stats.
Identities = 39/256 (15%), Positives = 74/256 (28%), Gaps = 20/256 (7%)
Query: 1 MYKILAVCL--FLTTFSISYARDADSC-TPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M KILA L + ++S DA + VR TG A + E+ G K
Sbjct: 1 MKKILAFALSTIVGISALSGCSDAGAKEKTVRIGVTGTDGNAW--EIVKGKAEKE-GIKV 57
Query: 58 NIKLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ + T ++L + I++ LE+F + + + + Y
Sbjct: 58 KLIEFSDYTTPNKALADGDIELNSFQHVAFLEQFKKEHKLDITAVGTTQIAPMGLYSEKH 117
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPG------NEGNQRILDMINNNKFSLKGFR 170
+ A G + G I N LK
Sbjct: 118 KKASEIPDGSEIAIPNDPTNQARALKLLDAAGLLKLKKDFGLFGDPSGIAENPKKLKITP 177
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
+I + NN A +P + +L + + +++
Sbjct: 178 VIAQQTPRVLKDVAASVINNGVAGQAGLDP-----AKDPIFLEDPKNENAKPYINIFAAR 232
Query: 231 RSDYLDKCPNISRLLK 246
D P + ++++
Sbjct: 233 TKD--KDDPTLKKVIE 246
>gi|188492546|ref|ZP_02999816.1| lipoprotein NlpA [Escherichia coli 53638]
gi|188487745|gb|EDU62848.1| lipoprotein NlpA [Escherichia coli 53638]
gi|332084846|gb|EGI90029.1| D-methionine-binding lipoprotein metQ [Shigella boydii 5216-82]
Length = 272
Score = 40.6 bits (93), Expect = 0.34, Method: Composition-based stats.
Identities = 20/241 (8%), Positives = 56/241 (23%), Gaps = 19/241 (7%)
Query: 17 SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGI 76
+ + ++ + + + +E G + + + N
Sbjct: 23 GCDQSSSDAKHIKVGVINGAEQDV-AEVAKKVAKEKYGLDVELVGFSGSLLPNDATN--- 78
Query: 77 DIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKK 136
+ F+ + KLVA G++ IK+ I +
Sbjct: 79 HGELDANVFQHRPFLEQDNQAHGYKLVAV-----GNTFVFPMAGYSKKIKTVAQIKEGAT 133
Query: 137 ELGAKIYGIEPGNEGNQRILDMI---NNNKFSLKGFRLIEASELASFSQIRRD-----QR 188
+ +I + + ++
Sbjct: 134 VAIPNDPTNLGRALLLLQKEKLITLKEGKGLLPTALDITDNPRHLQIMELEGAQLPRVLD 193
Query: 189 NNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI 248
+ V + + + L+ + E V +V + N+ L++
Sbjct: 194 DPKVDVAIISTTYIQQTGLSPVHDSVFIEDKNSP--YVNILVAREDNKNAENVKEFLQSY 251
Query: 249 K 249
+
Sbjct: 252 Q 252
>gi|22536321|ref|NP_687172.1| amino acid ABC transporter amino acid-binding protein/permease
[Streptococcus agalactiae 2603V/R]
gi|25010207|ref|NP_734602.1| hypothetical protein gbs0132 [Streptococcus agalactiae NEM316]
gi|76798972|ref|ZP_00781172.1| amino acid ABC transporter, amino acid-binding/permease protein
[Streptococcus agalactiae 18RS21]
gi|77409056|ref|ZP_00785774.1| amino acid ABC transporter, amino acid-binding protein/permease
protein [Streptococcus agalactiae COH1]
gi|77411816|ref|ZP_00788151.1| amino acid ABC transporter, amino acid-binding protein/permease
protein [Streptococcus agalactiae CJB111]
gi|77414941|ref|ZP_00791039.1| amino acid ABC transporter, amino acid-binding protein/permease
protein [Streptococcus agalactiae 515]
gi|22533144|gb|AAM99044.1|AE014197_12 amino acid ABC transporter, amino acid-binding protein/permease
protein [Streptococcus agalactiae 2603V/R]
gi|23094559|emb|CAD45777.1| Unknown [Streptococcus agalactiae NEM316]
gi|76585667|gb|EAO62225.1| amino acid ABC transporter, amino acid-binding/permease protein
[Streptococcus agalactiae 18RS21]
gi|77159009|gb|EAO70222.1| amino acid ABC transporter, amino acid-binding protein/permease
protein [Streptococcus agalactiae 515]
gi|77162151|gb|EAO73127.1| amino acid ABC transporter, amino acid-binding protein/permease
protein [Streptococcus agalactiae CJB111]
gi|77172350|gb|EAO75501.1| amino acid ABC transporter, amino acid-binding protein/permease
protein [Streptococcus agalactiae COH1]
gi|319744066|gb|EFV96443.1| amino acid ABC superfamily ATP binding cassette transporter,
membrane protein [Streptococcus agalactiae ATCC 13813]
Length = 516
Score = 40.6 bits (93), Expect = 0.34, Method: Composition-based stats.
Identities = 28/283 (9%), Positives = 76/283 (26%), Gaps = 26/283 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFAD------TGWTDIAATTAMTSVILEEIL- 53
M KIL + + +R WT T + +
Sbjct: 1 MKKILLSLFTALLITFGGMTSIQADEYLRVGMEAAYAPFNWTQNDNTNGAVPIEGTDQYA 60
Query: 54 -GYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPS-LEKFIAPYLEEGSIKLVAENLQGAK 111
GY + + + + P+ + + S +
Sbjct: 61 NGYDVQVAKKLAKKLNKKVVV--VKTKWEGLVPALTSGKLDMIIAGMSPTEERKKEINFS 118
Query: 112 YMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
+++ + + AK + + G + + +
Sbjct: 119 KPYYISEPTLVVNAEGKYTNAKNISDFKNAKVTAQQG----------VYLYNLIDQINGV 168
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVR 231
+ + F+Q+R+ + + ++S P ++ L E GF + T +
Sbjct: 169 KKEVAMGDFNQLRQAVESGVVDAYVSERPDATSAQTANPKLKMIELHQGFKTSDADTNIS 228
Query: 232 SDYLD---KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQF 271
+ ++++L+ S + +M ++ + +
Sbjct: 229 VGMRKGDNRINQVNQVLE--SISRDKQIALMDKMIKEQPSVKK 269
>gi|73661767|ref|YP_300548.1| nitrate/sulfonate/bicarbinate ABC transporter periplasmic protein
[Staphylococcus saprophyticus subsp. saprophyticus ATCC
15305]
gi|72494282|dbj|BAE17603.1| putative ABC-type nitrate sulfonate taurine bicarbonate transport
system periplasmic component [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
Length = 316
Score = 40.2 bits (92), Expect = 0.34, Method: Composition-based stats.
Identities = 24/284 (8%), Positives = 70/284 (24%), Gaps = 32/284 (11%)
Query: 1 MYKILAVCLFLTTFSISYARD-----ADSCTPVRFADTGWT-DIAATTAMTSVILEEILG 54
M K+L + L + + +D ++ T +
Sbjct: 1 MKKLLILSLIFLVLLSACTQSNSQKQSDKKETIKIGYLPITHSANLMMTQQIQQQTKNAN 60
Query: 55 YKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
Y + P +L + ID +++ + +
Sbjct: 61 YNLELVRFNNWPDLMDALNSGKIDGASTLIELAMKS--KEKGSNIKAVALGHHEGNVIMG 118
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
++ + I+ + + + +M F
Sbjct: 119 ------------QNNETISDFHNHEDYSFAIPHRYSTHYLLLEEMRKQLHLDSDTF---- 162
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV-RS 232
+ + +++ N + + EP + +A +V R
Sbjct: 163 SYHEMAPAEMPAALSENRISGYSVAEPFGALGEKLGKGHTLKHGSDVIPDAYCCALVLRE 222
Query: 233 DYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
D +++ + ++ + + + N KQ + + +
Sbjct: 223 DLINQHHHTAQAF------MTDYKKAGYKMNNKKQSVEVMSKHF 260
>gi|240172275|ref|ZP_04750934.1| lipoprotein [Mycobacterium kansasii ATCC 12478]
Length = 283
Score = 40.2 bits (92), Expect = 0.35, Method: Composition-based stats.
Identities = 14/102 (13%), Positives = 30/102 (29%), Gaps = 7/102 (6%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNI 241
+ R + W ++ + + + +V + R + L +
Sbjct: 184 AMLTALRAGQ--LTAGWTTTANPANPADLVVLNDGKDALIQAENVVPLYRRNTLTDRQRL 241
Query: 242 SRLLKNIK--FSVALENEMMKLILNNKQDRQFVGRTMLRTHP 281
+ + + A EM + + D Q V L HP
Sbjct: 242 A--INEVAGVLDTAALVEMRRQVA-GGADPQAVAAAWLGEHP 280
>gi|296390762|ref|ZP_06880237.1| C4-dicarboxylate-binding periplasmic protein [Pseudomonas
aeruginosa PAb1]
Length = 331
Score = 40.2 bits (92), Expect = 0.36, Method: Composition-based stats.
Identities = 31/289 (10%), Positives = 81/289 (28%), Gaps = 27/289 (9%)
Query: 1 MYKILA-VCLFLTTFSISYARDADSCTPVRFADT---GWTDIAATTAMTSVILEEILGYK 56
M+K + L S +A ++F+ + ++E+ LG +
Sbjct: 1 MFKTMVRALLCALAIGGSCLANAAQPIVIKFSHVVAENTPKGQ-GALLFKKLVEQRLGGR 59
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLE-KFIAPYLEEGSIKLVAENLQGAK---- 111
+ + F K + + Y + I + +
Sbjct: 60 VEVDVYPNSSLFGDGKEMEALLLGDVQMLAPSLAKFEQYTRKVQIFDLPFLFDDIQAVDR 119
Query: 112 -----YMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSL 166
A+ GI K+L A +EP + + ++ +
Sbjct: 120 FQRSPQGRALLTSMQGKGILGLAYWHNGMKQLSANRPLLEPE-DARGLKFRVQASDVLNE 178
Query: 167 KGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV 226
+ +L S SF+++ + + + S+ + ++ +
Sbjct: 179 QFRQLRAISRKMSFAEVYQGLQTGVVN-----GTENTWSNYESQKVNEVQKYFTESNHGL 233
Query: 227 Y---TVVRSDYLDKCP-NISRLLKNIKFSVALENEMMKLILNNKQDRQF 271
+ + + + P +I L+ I + ++ +D +
Sbjct: 234 VDYMVITNAKFWNGLPADIREALQRIM--DEVTVQVNLEAERLNRDARQ 280
>gi|154149100|ref|YP_001406627.1| D-methionine-binding lipoprotein MetQ [Campylobacter hominis ATCC
BAA-381]
gi|153805109|gb|ABS52116.1| D-methionine-binding lipoprotein MetQ [Campylobacter hominis ATCC
BAA-381]
Length = 261
Score = 40.2 bits (92), Expect = 0.37, Method: Composition-based stats.
Identities = 38/253 (15%), Positives = 79/253 (31%), Gaps = 16/253 (6%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K L + + A++ + T + + + +GY+ IK
Sbjct: 1 MKKFLNFVACIAFVLGFSSSFANATEKITVGATPVPHAEILEFVKPEL--KKMGYELEIK 58
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ V + + + + ++ + + KLV +
Sbjct: 59 VFNDYVIPNVATD---EGQLDANFFQHIPYLNDFNAQKGTKLVKAAAVHLE-----PMGV 110
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK-GFRLIEASELAS 179
++ IK+ ++ K E + +I N +L+ +IE S+
Sbjct: 111 YSKKIKNLDELKDGDKVGIPNDPTNESRALDVLVNVGLIKVNDNALRTPKDIIENSKNLK 170
Query: 180 FSQIRRDQ---RNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
F +I Q A+ + +N+ LN E A++ V D +
Sbjct: 171 FIEIEAAQVPRTLGDTAISVINTNFAMNAGLNPVKDALAIESKDSPYANILVV--KDGNE 228
Query: 237 KCPNISRLLKNIK 249
P I L+K +
Sbjct: 229 NTPKIKALVKALN 241
>gi|295705438|ref|YP_003598513.1| putative taurine ABC transporter taurine-binding protein [Bacillus
megaterium DSM 319]
gi|294803097|gb|ADF40163.1| putative taurine ABC transporter, taurine-binding protein [Bacillus
megaterium DSM 319]
Length = 333
Score = 40.2 bits (92), Expect = 0.39, Method: Composition-based stats.
Identities = 40/285 (14%), Positives = 79/285 (27%), Gaps = 37/285 (12%)
Query: 1 MYK-ILAVCLFLTTFSISYAR-----DADSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
M K IL + L + + D +R + LE+
Sbjct: 1 MKKGILGLLLCFIVVVSGCSSTTSGSENDLPKEIRLGYQASPNGELLAK-ARGSLEKKYP 59
Query: 55 YKTNIK---LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAK 111
+T IK + ++ ID + P + ++ G
Sbjct: 60 -ETQIKWIKFESGRDINNAIAGGSIDFGLVGTPPGAIGVANKLPYK---VYYLHDIIGES 115
Query: 112 YMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
L V GIKS D+ K + + +L + N LK +
Sbjct: 116 EALVVKK---DAGIKSLHDLK-------GKKIATTFSSTAHYSLLSALKNKNIDLKKDNI 165
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDL-NIHYLPGGEEISGFGEASVYT-V 229
+ I W+P N + + L +E++ G + +
Sbjct: 166 TLLDMQSPD--ILAAWNRGDIDGAYVWQPLQTNLIHADGNVLISSKEVAKQGSITGEFGI 223
Query: 230 VRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGR 274
V D+ K PN+ + + + + + ++ +
Sbjct: 224 VHEDFAKKYPNVVK---------GYISILNESVNYYHKNPEKSAE 259
>gi|283836072|ref|ZP_06355813.1| hypothetical protein CIT292_10491 [Citrobacter youngae ATCC 29220]
gi|291068259|gb|EFE06368.1| hypothetical protein CIT292_10491 [Citrobacter youngae ATCC 29220]
Length = 272
Score = 40.2 bits (92), Expect = 0.39, Method: Composition-based stats.
Identities = 20/231 (8%), Positives = 57/231 (24%), Gaps = 7/231 (3%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKN-KGIDIF 79
++ ++ + + + +E G + + + N +D
Sbjct: 27 QSNDAKHIKVGVINGAEQDV-AEVAKKVAKEKYGLDVELVGFSGSLLPNDATNHGELDAN 85
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
+ P LE+ + + A Y + V +
Sbjct: 86 VFQHRPFLEQDNKAHNYKLVAVGNTFVFPMAGYSKKIKTVAELKDGATIAIPNDPTNLGR 145
Query: 140 AKIYGIEPG-NEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
A + + + + + L +Q+ R + +
Sbjct: 146 ALLLLQKEKLITLKEGTGLLPTALDITDNPRHLNIMELEG--AQLPRVLDDPKVDAAIIS 203
Query: 199 EPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
+ + L+ + E V +V + N+ L++ +
Sbjct: 204 TTYIQQTGLSPVHDSVFIEDKNSP--YVNILVTREDNKDAGNVKEFLQSYQ 252
>gi|330445934|ref|ZP_08309586.1| putative uncharacterized protein VP1501 [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
gi|328490125|dbj|GAA04083.1| putative uncharacterized protein VP1501 [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
Length = 273
Score = 40.2 bits (92), Expect = 0.39, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 6/93 (6%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYKTNI 59
K V L L T S+ +A D + +R A T + + +L ++ GY +
Sbjct: 5 KTSLVILGLATASLCHAADNNDNKTIRLAT---TTSTYHSGLLDYLLPAFKKDTGYTVEV 61
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIA 92
R +N +D+ M + + KF+
Sbjct: 62 LAAGTGKALRMGENGDVDLVMTHAPKAEAKFVD 94
>gi|76788643|ref|YP_328867.1| His/Glu/Gln/Arg/opine amino acid ABC transporter amino acid-binding
protein/permease [Streptococcus agalactiae A909]
gi|76563700|gb|ABA46284.1| amino acid ABC transporter, amino acid-binding/permease protein,
His/Glu/Gln/Arg/opine family [Streptococcus agalactiae
A909]
Length = 516
Score = 40.2 bits (92), Expect = 0.39, Method: Composition-based stats.
Identities = 28/283 (9%), Positives = 76/283 (26%), Gaps = 26/283 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFAD------TGWTDIAATTAMTSVILEEIL- 53
M KIL + + +R WT T + +
Sbjct: 1 MKKILLSLFTALLITSGGMTSIQADEYLRVGMEAAYAPFNWTQNDNTNGAVPIEGTDQYA 60
Query: 54 -GYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPS-LEKFIAPYLEEGSIKLVAENLQGAK 111
GY + + + + P+ + + S +
Sbjct: 61 NGYDVQVAKKLAKKLNKKVVV--VKTKWEGLVPALTSGKLDMIIAGMSPTEERKKEINFS 118
Query: 112 YMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
+++ + + AK + + G + + +
Sbjct: 119 KPYYISEPTLVVNAEGKYTNAKNISDFKNAKVTAQQG----------VYLYNLIDQINGV 168
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVR 231
+ + F+Q+R+ + + ++S P ++ L E GF + T +
Sbjct: 169 KKEVAMGDFNQLRQAVESGVVDAYVSERPDATSAQTANPKLKMIELHQGFKTSDADTNIS 228
Query: 232 SDYLD---KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQF 271
+ ++++L+ S + +M ++ + +
Sbjct: 229 VGMRKGDNRINQVNQVLE--SISRDKQIALMDKMIKEQPSVKK 269
>gi|294651141|ref|ZP_06728476.1| taurine ABC superfamily ATP binding cassette transporter,
substrate-binding protein [Acinetobacter haemolyticus
ATCC 19194]
gi|292822973|gb|EFF81841.1| taurine ABC superfamily ATP binding cassette transporter,
substrate-binding protein [Acinetobacter haemolyticus
ATCC 19194]
Length = 346
Score = 40.2 bits (92), Expect = 0.39, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 3/79 (3%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY-TVVRSDYLDKCPN 240
+I WEP + H L +++ +G + VVR D+ +K P
Sbjct: 185 EITAAWERGDIDATYVWEPALSKVKASGHVLTDSKQVGEWGAPTYDLWVVRKDFAEKNPE 244
Query: 241 ISRLLKNIKFSVALENEMM 259
+ ++ S+
Sbjct: 245 FLKAF--VQTSLKQIESYN 261
>gi|222094072|ref|YP_002528129.1| ABC transporter , substrate-binding protein; nlpa lipoprotein
[Bacillus cereus Q1]
gi|221238127|gb|ACM10837.1| ABC transporter, substrate-binding protein; probable NLPA
lipoprotein [Bacillus cereus Q1]
Length = 280
Score = 40.2 bits (92), Expect = 0.39, Method: Composition-based stats.
Identities = 39/256 (15%), Positives = 74/256 (28%), Gaps = 20/256 (7%)
Query: 1 MYKILAVCL--FLTTFSISYARDADSC-TPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M KILA L + ++S DA + VR TG A + E+ G K
Sbjct: 1 MKKILAFALSAIVGISALSGCSDAGTKEKTVRIGVTGTDGNAW--EIVKEKAEKE-GIKV 57
Query: 58 NIKLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ + T ++L + I++ LE+F + + + + Y
Sbjct: 58 KLVEFSDYTTPNKALADGDIELNSFQHIAFLEQFKKEHKLDITAVGTTQIAPMGLYSEKH 117
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPG------NEGNQRILDMINNNKFSLKGFR 170
+ A G + G I N LK
Sbjct: 118 KKANEIPDGSEIAIPNDLTNQARALKLLDAAGLLKLKKDFGLFGDPSGIAENPKKLKITP 177
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
+I + NN A +P + +L + + +++
Sbjct: 178 VIAQQTPRVLKDVAASVINNGVAGQAGLDP-----AKDPIFLEDPKNENAKPYINIFAAR 232
Query: 231 RSDYLDKCPNISRLLK 246
D P + ++++
Sbjct: 233 TKD--KDDPTLKKVIE 246
>gi|226939067|ref|YP_002794138.1| pyruvate dehydrogenase subunit E1 [Laribacter hongkongensis HLHK9]
gi|226713991|gb|ACO73129.1| AceE [Laribacter hongkongensis HLHK9]
Length = 885
Score = 40.2 bits (92), Expect = 0.40, Method: Composition-based stats.
Identities = 12/76 (15%), Positives = 30/76 (39%)
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDL 283
A+V++ + L + + + + A + ++ L +Q +R + +
Sbjct: 751 ANVWSATSFNLLARDGRAAERHNRLHPTAAPQQGWVEQQLAGQQGPFIAATDYIRAYAEQ 810
Query: 284 LKNWLIGVTTFDGQDP 299
++ W+ G T G D
Sbjct: 811 IREWVPGRYTVLGTDG 826
>gi|299770775|ref|YP_003732801.1| Substrate-binding region of ABC-type glycine betaine transport
system [Acinetobacter sp. DR1]
gi|298700863|gb|ADI91428.1| Substrate-binding region of ABC-type glycine betaine transport
system [Acinetobacter sp. DR1]
Length = 359
Score = 40.2 bits (92), Expect = 0.40, Method: Composition-based stats.
Identities = 21/166 (12%), Positives = 43/166 (25%), Gaps = 16/166 (9%)
Query: 142 IYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPH 201
+ G + N + K + ++I W P
Sbjct: 149 LVGKKVAFPANSTAQYALEQALALNKIDKSKIKLIPLKPAEIVSAWTRGDIDAAYVWGPF 208
Query: 202 PINSDLNIHYLPGGEEISGFGEASVYT--VVRSDYLDKCPN-ISRLLKNIKFSVALENEM 258
+ VY VR ++ +K P+ + + LK +
Sbjct: 209 TQQLEKEGGKEIYRTTTLNEKGILVYNNFAVRKEFAEKHPDLVIKFLKAYQ--------- 259
Query: 259 MKLILNNKQDRQFVGR---TMLRTHPDLLKNWLIGVTTFDGQDPSR 301
+ K+D + L D ++ L G+ +D +
Sbjct: 260 -DQVDEYKRDPKAASEKISKYLSLPYDQVETTLAGIEYIPLKDQAS 304
>gi|288554814|ref|YP_003426749.1| putative ABC solute binding periplasmic lipoprotein [Bacillus
pseudofirmus OF4]
gi|288545974|gb|ADC49857.1| putative ABC solute binding periplasmic lipoprotein [Bacillus
pseudofirmus OF4]
Length = 276
Score = 40.2 bits (92), Expect = 0.41, Method: Composition-based stats.
Identities = 13/73 (17%), Positives = 22/73 (30%), Gaps = 11/73 (15%)
Query: 1 MYKILAVCLFLTTFSISYA----------RDADSCTPVRFADTGWTDIAATTAMTSVILE 50
M K+ V L A A+ + + F T + +LE
Sbjct: 1 MKKLKTVLLSALLVGALAACGSGETEETSAAAEDKSKITFGSTAGPYSDMVSNAIKPVLE 60
Query: 51 EILGYKTNIKLLA 63
E GY+ + +
Sbjct: 61 EK-GYEVEVVEFS 72
>gi|218783021|ref|YP_002434339.1| hypothetical protein Dalk_5201 [Desulfatibacillum alkenivorans
AK-01]
gi|218764405|gb|ACL06871.1| conserved hypothetical protein [Desulfatibacillum alkenivorans
AK-01]
Length = 322
Score = 40.2 bits (92), Expect = 0.41, Method: Composition-based stats.
Identities = 20/140 (14%), Positives = 39/140 (27%), Gaps = 20/140 (14%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTG-------WTDIAATTAMTSVILEEIL 53
M +C + I ++ A+ P+ W+D +E+++
Sbjct: 3 MKGACVLCALVIFLGIGFSAAAEEGDPISVVVVNSYHWGYPWSDGIVQG------IEDVM 56
Query: 54 -GYKTNIKLLA------VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAEN 106
GY + L F+ K + ++ P L + + I +N
Sbjct: 57 IGYNIALTHLQMDTKRNTSEEFKKQAAKKVQAWIQANKPELIIAVDDNASKYLIAPYYKN 116
Query: 107 LQGAKYMLAVNDVGFALGIK 126
VN G
Sbjct: 117 SYPPVVFCGVNWEASEYGFP 136
>gi|126699088|ref|YP_001087985.1| putative aliphatic sulfonates ABC transporter substrate-binding
lipoprotein [Clostridium difficile 630]
gi|254975039|ref|ZP_05271511.1| putative aliphatic sulfonates ABC transporter,substrate-binding
lipoprotein [Clostridium difficile QCD-66c26]
gi|255092428|ref|ZP_05321906.1| putative aliphatic sulfonates ABC transporter,substrate-binding
lipoprotein [Clostridium difficile CIP 107932]
gi|255100510|ref|ZP_05329487.1| putative aliphatic sulfonates ABC transporter,substrate-binding
lipoprotein [Clostridium difficile QCD-63q42]
gi|255306452|ref|ZP_05350623.1| putative aliphatic sulfonates ABC transporter,substrate-binding
lipoprotein [Clostridium difficile ATCC 43255]
gi|255314167|ref|ZP_05355750.1| putative aliphatic sulfonates ABC transporter,substrate-binding
lipoprotein [Clostridium difficile QCD-76w55]
gi|255516846|ref|ZP_05384522.1| putative aliphatic sulfonates ABC transporter,substrate-binding
lipoprotein [Clostridium difficile QCD-97b34]
gi|255649946|ref|ZP_05396848.1| putative aliphatic sulfonates ABC transporter,substrate-binding
lipoprotein [Clostridium difficile QCD-37x79]
gi|306520029|ref|ZP_07406376.1| putative aliphatic sulfonates ABC transporter,substrate-binding
lipoprotein [Clostridium difficile QCD-32g58]
gi|115250525|emb|CAJ68349.1| ABC-type transport system,alkanesulfonates-family extracellular
solute-binding protein [Clostridium difficile]
Length = 330
Score = 40.2 bits (92), Expect = 0.41, Method: Composition-based stats.
Identities = 42/283 (14%), Positives = 80/283 (28%), Gaps = 24/283 (8%)
Query: 2 YKILAV---CLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAM-----TSVILEEIL 53
KILAV + + ++ + D + T + ILE+
Sbjct: 6 KKILAVMTSLIMVLVGTVGCSTTNDKKDEPAKKEASLPKEINLTYVKSPLNVPSILEKKD 65
Query: 54 G-YKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKY 112
+ K + V F L E L S + A N G K
Sbjct: 66 DLFGKEFKKDNIKVNFHELTTGPEQTQALAAG---ELDFLHALGGTSAIIAASNGVGLKI 122
Query: 113 MLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ + + D K K+L K G +Q ++ + +++ +
Sbjct: 123 TNIYSRSPKGYMLITNNDNIKSIKDLKGKKIVGPKGTILHQLLIAALAKEGYTIDDVEYV 182
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRS 232
+ V + P + + + + E G + T V
Sbjct: 183 NMD----IPSAASALESKSADVAMLAGPVALKTINSGAKMIVNGEGLVSGI--IVTAVSD 236
Query: 233 DYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRT 275
D+ +K P + + + E +K + NK + V
Sbjct: 237 DFAEKYPELVKRFMKVH------EETLKYMNENKDEVMDVVSK 273
>gi|229824304|ref|ZP_04450373.1| hypothetical protein GCWU000282_01609 [Catonella morbi ATCC
51271]
gi|229786277|gb|EEP22391.1| hypothetical protein GCWU000282_01609 [Catonella morbi ATCC
51271]
Length = 341
Score = 40.2 bits (92), Expect = 0.41, Method: Composition-based stats.
Identities = 13/96 (13%), Positives = 29/96 (30%), Gaps = 14/96 (14%)
Query: 1 MYK--------ILAVCLFLTTFSISYARDADSCTPVRFADTGW---TDIAATTAMTSVIL 49
M K L + A+ A+ ++ +I +T +L
Sbjct: 1 MKKSLKLFAIFTLIATFVAGLIAPFTAKAAEKIDTIKIGFVPSRNPDEIVTSTEPLKQLL 60
Query: 50 EEIL---GYKTNIKLLAVPVTFRSLKNKGIDIFMGY 82
++ L G++ + V F ++ + Y
Sbjct: 61 KDELAKNGFEVENVEITVGTNFEAVGEGLASGTLDY 96
>gi|237728977|ref|ZP_04559458.1| cytoplasmic membrane lipoprotein-28 [Citrobacter sp. 30_2]
gi|226909599|gb|EEH95517.1| cytoplasmic membrane lipoprotein-28 [Citrobacter sp. 30_2]
Length = 272
Score = 40.2 bits (92), Expect = 0.41, Method: Composition-based stats.
Identities = 21/232 (9%), Positives = 60/232 (25%), Gaps = 7/232 (3%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKN-KGIDI 78
+ + ++ + + + +E G + + + + N +D
Sbjct: 26 QQSSDAKHIKVGVINGAEQDV-AEVAKKVAKEKYGLEVELVGFSGSLLPNDATNHGELDA 84
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL 138
+ P LE+ + + A Y + V +
Sbjct: 85 NVFQHRPFLEQDNKAHDYKLVAVGNTFVFPMAGYSKKIKTVAELKDGATIAIPNDPTNLG 144
Query: 139 GAKIYGIEPGNEGNQRILDMI-NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLS 197
A + + + ++ + L +Q+ R + V +
Sbjct: 145 RALLLLQKEKLITLKADTGLLPTALDITDNPRHLKIMELEG--AQLPRVLDDQKVDVAII 202
Query: 198 WEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
+ + L+ + E V +V + N+ L++ +
Sbjct: 203 STTYIQQTGLSPVHDSVFIEDKNSP--YVNILVAREDNKDAENVKEFLQSYQ 252
>gi|315647777|ref|ZP_07900878.1| aliphatic sulfonates family ABC transporter, periplasmic
ligand-binding protein [Paenibacillus vortex V453]
gi|315276423|gb|EFU39766.1| aliphatic sulfonates family ABC transporter, periplasmic
ligand-binding protein [Paenibacillus vortex V453]
Length = 339
Score = 40.2 bits (92), Expect = 0.42, Method: Composition-based stats.
Identities = 33/294 (11%), Positives = 83/294 (28%), Gaps = 40/294 (13%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP---------------VRFADTGWTD--IAATTAM 44
+ + ++ + A VR G A
Sbjct: 7 KVVFILLFIISVLASGCASTDSQSKTRAVEKGADGQYGDLIVRLGVQGSGGLFGKAREEG 66
Query: 45 TSVILEEILGYKTNI-KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLV 103
LG K + + P ++ + +D P + A + + +
Sbjct: 67 WFEEEFGKLGVKVEWAEFQSGPPMTEAMASNRLDFAGLGNMPIIAAQAADIPFKVISQSL 126
Query: 104 AENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK 163
+ Q ++ D ++ K + A G N + + D
Sbjct: 127 --HGQKNVAIIVPPDSTAQ-------SLSDLKGKKVAVTKGSNAFNFLYRGLADA----G 173
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+ +I+ + + + + +W+P+ + L +
Sbjct: 174 VKVSDIEIIQLQPD----EAQPAFESGGVEAWATWDPYITLNTLTGKGKVLADGEQLGVL 229
Query: 224 ASVYTVVRSDYLDKCPNIS----RLLKN-IKFSVALENEMMKLILNNKQDRQFV 272
+ + +VR D+ ++ P++ ++L + + E E +K + + Q V
Sbjct: 230 SPSFNIVRKDFAEQYPDLVTLYLKVLNQTLAWEKENEAEALKRYADERGVPQEV 283
>gi|238796283|ref|ZP_04639793.1| Taurine-binding periplasmic protein [Yersinia mollaretii ATCC
43969]
gi|238719976|gb|EEQ11782.1| Taurine-binding periplasmic protein [Yersinia mollaretii ATCC
43969]
Length = 303
Score = 40.2 bits (92), Expect = 0.42, Method: Composition-based stats.
Identities = 11/74 (14%), Positives = 22/74 (29%), Gaps = 1/74 (1%)
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLD 236
+ I + W P L E++ +G ++ VVR D+ +
Sbjct: 132 MQPAAISAAWQRGDIDGAYVWAPVVNELAKTGKILTDSEQVGLWGAPTLDVWVVRKDFAE 191
Query: 237 KCPNISRLLKNIKF 250
P++
Sbjct: 192 SHPDVVTAFVRSTL 205
>gi|300694346|ref|YP_003750319.1| alkanesulfonate transporter subunit; periplasmic-binding component
of ABC superfamily [Ralstonia solanacearum PSI07]
gi|299076383|emb|CBJ35697.1| alkanesulfonate transporter subunit; periplasmic-binding component
of ABC superfamily [Ralstonia solanacearum PSI07]
Length = 333
Score = 40.2 bits (92), Expect = 0.43, Method: Composition-based stats.
Identities = 34/266 (12%), Positives = 75/266 (28%), Gaps = 36/266 (13%)
Query: 2 YKILAVCLFLTTFSISY-ARDADSCTPVRFADTGWTDIAATTAMTSVILEEI-------- 52
+ LA L A AD VR + +V+ +
Sbjct: 17 RRWLATLLGAGLALCGGMALAADPAGTVRIGFQ-------KAGLLAVLKAQGSLDKPLAD 69
Query: 53 LGYKTNIKLLAVPVTFRSLKN-KGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAK 111
LGY+ K N ID + + A + + AE
Sbjct: 70 LGYRIEWKEFPAGPQLLEALNAGSIDF---GYTGAPPAVFAQAAGAQFVYVGAEPGAITN 126
Query: 112 YMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
L V D A G+ + K ++ G+ N ++ ++ +++ +
Sbjct: 127 EALFVLDSSPARGVADLKG----------KRIALQKGSSSNYLLVQLLKRANLTVQDIQP 176
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVR 231
I ++ R + ++ W+P+ + + + + +
Sbjct: 177 IYLPP----AEARAAFESGAVDAWVVWDPYYALAQKALKVRTLADYTGLPSPFN-FYEAT 231
Query: 232 SDYLDKCPNIS-RLLKNIKFSVALEN 256
++ P +L ++ + N
Sbjct: 232 PGFVQAHPRAVNAILAQLRTTGLWVN 257
>gi|299134550|ref|ZP_07027742.1| extracellular solute-binding protein family 1 [Afipia sp. 1NLS2]
gi|298590360|gb|EFI50563.1| extracellular solute-binding protein family 1 [Afipia sp. 1NLS2]
Length = 362
Score = 40.2 bits (92), Expect = 0.43, Method: Composition-based stats.
Identities = 26/227 (11%), Positives = 54/227 (23%), Gaps = 12/227 (5%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
+ A I + A + FA G + + A E+ G K
Sbjct: 18 LAAGGFLAVLSGIGSSAQAADEKELVFAGFGGSLQKSLQATVIPAFEKKYGVKVVYVTGT 77
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
+K + + + + +E+ KL + V D
Sbjct: 78 SNQILAKVKAQKNSPQIDVIWANDTTHYQGKMEKLYAKLDPAKVPNLSQ---VYDFAKDR 134
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN-NNKFSLKGFRLIEASELASFSQ 182
+ E G +D + K + + + F++
Sbjct: 135 DGIGIVMGIQALGIEYNTQVFKEKGWAPPSSWMDFWDPKYKGHVVFYNMPIGYANLLFAK 194
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV 229
I ++ + +W + L A V +
Sbjct: 195 IADLNGGSVTNLEPAW--------NKMKELKPNVLAFIDPPAQVDAL 233
>gi|213648171|ref|ZP_03378224.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Typhi str. J185]
Length = 258
Score = 40.2 bits (92), Expect = 0.43, Method: Composition-based stats.
Identities = 23/274 (8%), Positives = 67/274 (24%), Gaps = 22/274 (8%)
Query: 9 LFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVT- 67
+ + +D ++ + + + +E G + V
Sbjct: 1 MIGSLALAGCGQDEKDPNHIKVGVIVGAEQQV-AEVAQKVAKEKYGLDVELVTFNDYVLP 59
Query: 68 FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKS 127
+L ID P L++ I + A Y + +
Sbjct: 60 NEALSKGDIDANAFQHKPYLDQQIKDRGYKLVSVGKTFVYPIAGYSKKIKSLDELKDGSQ 119
Query: 128 YQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR--- 184
+ + + G ++ + + ++E + ++
Sbjct: 120 VAVPNDPTNLGRSLLLLQKVG------LIKLKDGVSLLPTSLDIVENPKNLKIVELEAPQ 173
Query: 185 --RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
R + A+ + + S + + G + V +V + N+
Sbjct: 174 LPRSLDDAQIALAVINTTYA--SQIGLTPAKDGIFVEDKDSPYVNLIVTREDNKDAENVK 231
Query: 243 RLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
+ ++ + E + N +
Sbjct: 232 KFVQAYQ--SDEVYEAANKVFNGG-----AVKGW 258
>gi|260870391|ref|YP_003236793.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli O111:H- str.
11128]
gi|257766747|dbj|BAI38242.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli O111:H- str.
11128]
Length = 272
Score = 40.2 bits (92), Expect = 0.43, Method: Composition-based stats.
Identities = 20/238 (8%), Positives = 56/238 (23%), Gaps = 19/238 (7%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
+ + ++ + + + +E G + + + N
Sbjct: 26 QSSSDAKHIKVGVINGAEQDV-AEVAKKVAKEKYGLDVELVGFSGSLLPNDATN---HGE 81
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
+ F+ + KLVA G++ IK+ I +
Sbjct: 82 LDANVFQHRPFLEQDNQAHGYKLVAV-----GNTFVFPMAGYSKKIKTVAQIKEGATVAI 136
Query: 140 AKIYGIEPGNEGNQRILDMI---NNNKFSLKGFRLIEASELASFSQIRRD-----QRNNI 191
+ +I + + ++ +
Sbjct: 137 PNDPTNLGRALLLLQKEKLITLKEGKGLLPTALDITDNPRHLQIMELEGAQLPRVLDDPK 196
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
V + + + L+ + E V +V + N+ L++ +
Sbjct: 197 VDVAIISTTYIQQTGLSPVHDSVFIEDKNSP--YVNILVAREDNKNAENVKEFLQSYQ 252
>gi|148254015|ref|YP_001238600.1| putative taurine ABC transporter substrate binding protein
[Bradyrhizobium sp. BTAi1]
gi|146406188|gb|ABQ34694.1| Putative Taurine ABC transporter, substrate binding protein
[Bradyrhizobium sp. BTAi1]
Length = 330
Score = 40.2 bits (92), Expect = 0.43, Method: Composition-based stats.
Identities = 31/230 (13%), Positives = 63/230 (27%), Gaps = 20/230 (8%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-IKLLAVPVTFRSLKNKGIDIFMGY 82
+ P+R A + + E+ G K + +L + +DI
Sbjct: 21 AADPIRIAYQTPPSPSQVAIVDGAY-EKATGATIEWRKFESGASVIAALASGAVDIGYAG 79
Query: 83 WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKI 142
P + + +L G L V + K K +
Sbjct: 80 SSPLAAGVTRGLPIK---AFLIADLIGDAEALVVRNGAGIAEPKDLAG-KKVAVPFVSTT 135
Query: 143 YGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP 202
+ + I D N +L+ +I W+P
Sbjct: 136 HYSLLFALKHWNI-DPAKVNILNLQPP------------EIAAAFARGDIDATYVWDPAL 182
Query: 203 INSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISRLLKNIKFS 251
++ L E++ G + +VR+D+ K P++ + +
Sbjct: 183 ASAKKTGKVLITSSEVAKLGGPTFDAWIVRNDFAAKHPDVVKAFARVTLD 232
>gi|262373176|ref|ZP_06066455.1| taurine ABC transporter, periplasmic binding protein [Acinetobacter
junii SH205]
gi|262313201|gb|EEY94286.1| taurine ABC transporter, periplasmic binding protein [Acinetobacter
junii SH205]
Length = 346
Score = 40.2 bits (92), Expect = 0.44, Method: Composition-based stats.
Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 1/70 (1%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY-TVVRSDYLDKCPN 240
+I WEP H L +++ +G + VVR D+ +K P
Sbjct: 185 EITAAWERGDIDATYVWEPALSKVKATGHVLTDSKQVGEWGAPTYDLWVVRKDFAEKNPE 244
Query: 241 ISRLLKNIKF 250
+
Sbjct: 245 FLKAFVRTSL 254
>gi|322392587|ref|ZP_08066047.1| Fe3+ ABC superfamily ATP binding cassette transporter, binding
protein [Streptococcus peroris ATCC 700780]
gi|321144579|gb|EFX39980.1| Fe3+ ABC superfamily ATP binding cassette transporter, binding
protein [Streptococcus peroris ATCC 700780]
Length = 353
Score = 40.2 bits (92), Expect = 0.45, Method: Composition-based stats.
Identities = 34/285 (11%), Positives = 78/285 (27%), Gaps = 43/285 (15%)
Query: 1 MYKIL---AVCLFLTTFSISYARDADSC---------TPVRFADTGWTDIAATTAMTSVI 48
M K A C + + D S + ++ + +
Sbjct: 6 MKKKWMYYAACGLALLGLTACSSDNASGENASDNGGSDSLVIYSPN-SEGLIGATIPAF- 63
Query: 49 LEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP--------------- 93
EE G K + F+ L+++ + A
Sbjct: 64 -EEKYGIKVELIQAGTGELFKKLESEKEAPVADVIFGGSYTQYATHGELFENYVSPENEN 122
Query: 94 --YLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEG 151
+ + ++ D+ + I+ Y D+ K + + +
Sbjct: 123 VIKEYQNTTGYSTPYTLDGSVLIVNPDLTKGMNIEGYSDLIKPEIKGKIATADPANSSSA 182
Query: 152 NQRILDMINNNK---------FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWE--P 200
++ +M+ + F LI+ +S S + + + AV LS+E
Sbjct: 183 FAQLTNMLQAEGGYTDEKAWTYVKDLFTLIDGKIGSSSSGVYKAVADGEMAVGLSYEDPA 242
Query: 201 HPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
+ +D + +E + F AS + + + +
Sbjct: 243 VKLLNDGANVKVVYPKEGTVFLPASAAIIKNAKNKENAKKFIDFI 287
>gi|294341797|emb|CAZ90226.1| putative ABC-type transport system, periplasmic component
[Thiomonas sp. 3As]
Length = 336
Score = 40.2 bits (92), Expect = 0.45, Method: Composition-based stats.
Identities = 33/252 (13%), Positives = 62/252 (24%), Gaps = 31/252 (12%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAAT-TAMTSVILEEILGYKTN-IKLL 62
L L S A +R + + ++ G + +K
Sbjct: 20 LKAGLAAGLVSGFPALARAQDNTIRIGYWPIAAGIPLYAGVNHDVFKQA-GLQVEAVKFA 78
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
+ ++ I + + E G K++A N AK +L V
Sbjct: 79 SAQQVVEAMIAGRIHGSANGTASAALG-LGDIAEPGLCKIIAANPSNAKLVLDEVLVAEK 137
Query: 123 LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
K+ + K G PG + + N + Q
Sbjct: 138 SDYKTIASLK-------GKRIGCGPGIQNVTLAKIIFEKNGYPEVK------PIEMPVGQ 184
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLN-----------IHYLPGGEEISGFGEASVYTVVR 231
+ EP L Y+ G +G ++ T
Sbjct: 185 HVAALAAGQVDAVYTLEPTGTVGRLKGLTKILETGVISKYVLGNPMAPWYGGSASLTAA- 243
Query: 232 SDYLDKCPNISR 243
+L P +++
Sbjct: 244 --FLKAQPELAK 253
>gi|315648360|ref|ZP_07901460.1| extracellular solute-binding protein family 1 [Paenibacillus vortex
V453]
gi|315276295|gb|EFU39639.1| extracellular solute-binding protein family 1 [Paenibacillus vortex
V453]
Length = 537
Score = 39.8 bits (91), Expect = 0.45, Method: Composition-based stats.
Identities = 30/280 (10%), Positives = 68/280 (24%), Gaps = 53/280 (18%)
Query: 1 MYK---ILAVCLFLTTFSISYARDADSCT-----------PVRFADTGWTDIAATTAMTS 46
M K ILA L +TT S + + P+ A T +
Sbjct: 1 MKKLKLILAAALVMTTLSACGGNEKAASGGDSGTEGDSSAPITLTWFDQNTGDAFTNPVA 60
Query: 47 VILEEILGYKTNIKLLAVPVTFR---SLKNKG-------------------------IDI 78
++ E G I+ + L + ++
Sbjct: 61 QVITEKTGVTVEIQQPTGNPVEKLNLMLASGDLPDVILMSRGSDIMNKYITSGAVIPLND 120
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA-VNDVGFALGIKSYQDIAKYKKE 137
+ P+++K L + + Y L GF + +++ K
Sbjct: 121 LIEEHGPNIQKMYGDTLTKTRSEDGNNYYFSNWYGLEQYPVFGFMMRKDIMKELGVGDKM 180
Query: 138 LGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLS 197
+ + E ++ + + + + + + +
Sbjct: 181 DNGEPFTAEEF---EALLVKFKEKYPTIDGKESIPMSLNGENIGSVSGSFK-GMYGIMPY 236
Query: 198 WEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDK 237
+E + + ++ R LDK
Sbjct: 237 YETNGELKKDIRDPRYLEMVKF------LNSLYRKGLLDK 270
>gi|261407643|ref|YP_003243884.1| aliphatic sulfonates family ABC transporter periplasmic
ligand-binding protein [Paenibacillus sp. Y412MC10]
gi|261284106|gb|ACX66077.1| aliphatic sulfonates family ABC transporter, periplasmic
ligand-binding protein [Paenibacillus sp. Y412MC10]
Length = 339
Score = 39.8 bits (91), Expect = 0.45, Method: Composition-based stats.
Identities = 37/291 (12%), Positives = 88/291 (30%), Gaps = 36/291 (12%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCT-----------PVRFADTGWTD--IAATTAMTSV 47
+ +L + +F + + + ++ A VR G A
Sbjct: 10 IMLLLILSVFASGCAGANSQPAAGAVKKGADGKYTDLTVRLGVQGSGGLFGKAREERWFE 69
Query: 48 ILEEILGYKTNI-KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAEN 106
LG K + + P ++ + +D P + A + + + +
Sbjct: 70 EEFGKLGVKVEWAEFQSGPPMTEAMASNRLDFAGLGNMPIIAAQAADIPFKVISQSL--H 127
Query: 107 LQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSL 166
Q ++ D ++ K + A G N + + D +
Sbjct: 128 GQKNVAIIVPPDSTAQ-------TLSDLKGKKVAVTKGSNAFNFLYRGLADQ----GLKV 176
Query: 167 KGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV 226
+I+ + + + + +W+P+ + L + +
Sbjct: 177 SDIEIIQLQPD----EAQPAFESGGVDAWATWDPYITLNTLTGKGNVLADGEQLGVLSPS 232
Query: 227 YTVVRSDYLDKCPNISRL----LKN-IKFSVALENEMMKLILNNKQDRQFV 272
+ +VR D+ D+ P++ L L + + E E +K + + Q V
Sbjct: 233 FNIVRKDFADQYPDLVTLYLTVLNKTLAWEKENEAEAIKRYADERGIPQEV 283
>gi|220920371|ref|YP_002495672.1| NMT1/THI5 like domain-containing protein [Methylobacterium nodulans
ORS 2060]
gi|219944977|gb|ACL55369.1| NMT1/THI5 like domain protein [Methylobacterium nodulans ORS 2060]
Length = 313
Score = 39.8 bits (91), Expect = 0.45, Method: Composition-based stats.
Identities = 33/281 (11%), Positives = 75/281 (26%), Gaps = 26/281 (9%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP 65
A + + ++ A T V +GWT A T + + G IK +
Sbjct: 3 AAAIGMGLAALLAAPAFAQGTKVTIGMSGWTGFAPLTLAKEAGIFQKNGLDVTIKKIPQA 62
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
++++ + + + +L L V + A+
Sbjct: 63 SRHLAIRSGDVQCAATTVETWVVWNANGVPAKQIFQLDKSYGAD---GLVVRNDIAAIKD 119
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
+ +A G P M+ N SLK +++ +
Sbjct: 120 LKGKTVAASVP-------GTAPYFTLAW----MLKQNGLSLKDVKVVNLEPGP----AAQ 164
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR-- 243
+++EP+ + + D+L++ P ++
Sbjct: 165 AFIAGQNDAAVTYEPYLSSVRAAPQAGKIIATTLDYPMIMDTFGCTPDFLNQNPKAAKAL 224
Query: 244 ---LLKNIKFSVALEN---EMMKLILNNKQDRQFVGRTMLR 278
+ + + E+M + + LR
Sbjct: 225 ADSYFEALDLIAKDQAKSFEIMGADVKQTGEAFAASAKFLR 265
>gi|213586563|ref|ZP_03368389.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Typhi str. E98-0664]
Length = 105
Score = 39.8 bits (91), Expect = 0.46, Method: Composition-based stats.
Identities = 14/99 (14%), Positives = 26/99 (26%), Gaps = 4/99 (4%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K A L D P ++ + + + +E G +
Sbjct: 5 FKTFAAVGALIGSLALAGCGQDEKDPNHIKVGVIVGAEQQV-AEVAQKVAKEKYGLDVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEE 97
V +L ID P L++ I +
Sbjct: 64 VTFNDYVLPNEALSKGDIDANAFQHKPYLDQQIKDRGYK 102
>gi|77405093|ref|ZP_00782192.1| amino acid ABC transporter, amino acid-binding protein/permease
protein [Streptococcus agalactiae H36B]
gi|77176236|gb|EAO79006.1| amino acid ABC transporter, amino acid-binding protein/permease
protein [Streptococcus agalactiae H36B]
Length = 431
Score = 39.8 bits (91), Expect = 0.46, Method: Composition-based stats.
Identities = 28/283 (9%), Positives = 76/283 (26%), Gaps = 26/283 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFAD------TGWTDIAATTAMTSVILEEIL- 53
M KIL + + +R WT T + +
Sbjct: 1 MKKILLSLFTALLITSGGMTSIQADEYLRVGMEAAYAPFNWTQNDNTNGAVPIEGTDQYA 60
Query: 54 -GYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPS-LEKFIAPYLEEGSIKLVAENLQGAK 111
GY + + + + P+ + + S +
Sbjct: 61 NGYDVQVAKKLAKKLNKKVVV--VKTKWEGLVPALTSGKLDMIIAGMSPTEERKKEINFS 118
Query: 112 YMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
+++ + + AK + + G + + +
Sbjct: 119 KPYYISEPTLVVNAEGKYTNAKNISDFKNAKVTAQQG----------VYLYNLIDQINGV 168
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVR 231
+ + F+Q+R+ + + ++S P ++ L E GF + T +
Sbjct: 169 KKEVAMGDFNQLRQAVESGVVDAYVSERPDATSAQTANPKLKMIELHQGFKTSDADTNIS 228
Query: 232 SDYLD---KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQF 271
+ ++++L+ S + +M ++ + +
Sbjct: 229 VGMRKGDNRINQVNQVLE--SISRDKQIALMDKMIKEQPSVKK 269
>gi|320166446|gb|EFW43345.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 108
Score = 39.8 bits (91), Expect = 0.46, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 26 TPVRFADTGWTDIAATTAMTSVILEEILGY---KTNIKLLAVPVTFRSLKNKGIDIFMGY 82
P+R A GW + +++L+E LG N+ L+ L +D ++
Sbjct: 24 EPIRLASGGWDGAIVDNVLATILLQEKLGIPATTVNVDNLSDEEVVEMLNRGEVDAYLEL 83
Query: 83 WY 84
W
Sbjct: 84 WG 85
>gi|238005558|tpg|DAA06502.1| TPA_inf: venus kinase receptor [Nasonia vitripennis]
Length = 1262
Score = 39.8 bits (91), Expect = 0.46, Method: Composition-based stats.
Identities = 20/166 (12%), Positives = 46/166 (27%), Gaps = 27/166 (16%)
Query: 150 EGNQRILDMINNNKF-------SLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP 202
E + I D I+N K ++I++ + + V L W P
Sbjct: 199 EATKFIKDHIDNWKLYVRVAWVGPNLKQIIKSLTKEYLQLTQNSALADRSLVILHWTPSN 258
Query: 203 INSDLNIHYLPGGEEI--------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVAL 254
I + + + + +V + + ++++ ++
Sbjct: 259 IIPNEREFVSVEFPRCGSRGTSMGCQYETSKLEKLVWNGLESIAKLAFEAINRVQYTDSM 318
Query: 255 ENEMMKLILNN---------KQDR--QFVGRTMLRTH-PDLLKNWL 288
++ K Q V L+ + L NW+
Sbjct: 319 YENLISKYNEKLINKYNSYSKLSAMEQEVACDWLKENLNYTLDNWM 364
>gi|156553278|ref|XP_001599868.1| PREDICTED: similar to tyrosine protein kinase [Nasonia vitripennis]
Length = 1264
Score = 39.8 bits (91), Expect = 0.46, Method: Composition-based stats.
Identities = 20/166 (12%), Positives = 46/166 (27%), Gaps = 27/166 (16%)
Query: 150 EGNQRILDMINNNKF-------SLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP 202
E + I D I+N K ++I++ + + V L W P
Sbjct: 202 EATKFIKDHIDNWKLYVRVAWVGPNLKQIIKSLTKEYLQLTQNSALADRSLVILHWTPSN 261
Query: 203 INSDLNIHYLPGGEEI--------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVAL 254
I + + + + +V + + ++++ ++
Sbjct: 262 IIPNEREFVSVEFPRCGSRGTSMGCQYETSKLEKLVWNGLESIAKLAFEAINRVQYTDSM 321
Query: 255 ENEMMKLILNN---------KQDR--QFVGRTMLRTH-PDLLKNWL 288
++ K Q V L+ + L NW+
Sbjct: 322 YENLISKYNEKLINKYNSYSKLSAMEQEVACDWLKENLNYTLDNWM 367
>gi|312880995|ref|ZP_07740795.1| amino acid/amide ABC transporter substrate-binding protein, HAAT
family [Aminomonas paucivorans DSM 12260]
gi|310784286|gb|EFQ24684.1| amino acid/amide ABC transporter substrate-binding protein, HAAT
family [Aminomonas paucivorans DSM 12260]
Length = 391
Score = 39.8 bits (91), Expect = 0.47, Method: Composition-based stats.
Identities = 32/295 (10%), Positives = 76/295 (25%), Gaps = 47/295 (15%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFA--------DTGWTDIAATTAMTSVILEE- 51
M K L L + ++S A A +P++ W + A+ +V EE
Sbjct: 1 MKKALGFTLLAASLAVSCAAFAADKSPIKIGKLAALTGDGATWGEHHRNAAIMAV--EEV 58
Query: 52 -----ILGYKTNIKLLAV--------PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEG 98
I G+K + + T R ++ + G + I P ++G
Sbjct: 59 NAKGGIAGHKVELVVYDTKGRAEDAVNATRRLIEMDKVVAISGTNTSGQQIAIRPLSQKG 118
Query: 99 SIKLVAE----------NLQGAKYMLAVNDVGFALGIKSY-----QDIAKYKKELGAKIY 143
+ +++ G Y + + + +K +
Sbjct: 119 QVPIMSTAATNPVVTQDPKTGKPYPYSFRICFTDPYVSTCVAELAYRYLGKRKAVLFTDV 178
Query: 144 GIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPI 203
G + + + + ++ +QI + + VF+ +
Sbjct: 179 GSDYAEGMKVFFVKQFEKLGGKIATIQGYRGGDVDFRAQITAAKASGGDVVFVPGVYKDM 238
Query: 204 NSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISR---LLKNIKFSVALE 255
+ G+ + + N+ +
Sbjct: 239 ALIIKQCAEMDWHPAFIGGDGY-----SPAMYEIAGAAMEGTYWVSNVDWDDPNL 288
>gi|139473094|ref|YP_001127809.1| glutamine ABC transporter, glutamine-binding protein/permease
protein [Streptococcus pyogenes str. Manfredo]
gi|134271340|emb|CAM29558.1| glutamine ABC transporter, glutamine-binding protein/permease
protein [Streptococcus pyogenes str. Manfredo]
Length = 522
Score = 39.8 bits (91), Expect = 0.47, Method: Composition-based stats.
Identities = 31/291 (10%), Positives = 69/291 (23%), Gaps = 27/291 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFAD------TGWTDIAATTAMTSVILEE--- 51
M K++ CL A + +R WT A+ +V +E
Sbjct: 1 MKKLILSCLVALALLFGGMSRAQANQYLRVGMEAAYAPFNWTQDDASNG--AVPIEGTSQ 58
Query: 52 -ILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGA 110
GY + + L + G I S N
Sbjct: 59 YANGYDVQVAKKVAKAMNKELLV-VKTSWTGLIPALTSGKIDMIAAGMSPTKERRNEISF 117
Query: 111 KYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
+ + AK K+ + G + +
Sbjct: 118 SNSYYTSQPVLVVTANGKYAEAKSLKDFSGAKVTAQQGVWHVNLLTQLKGAK--LQTPMG 175
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
A S + + P + + + + E+ V
Sbjct: 176 DFSQMRQALTSGVIDAYISERPEAMTAEAADSRLKMITLK------KGFAVAESDAAIAV 229
Query: 231 -RSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNK---QDRQFVGRTML 277
D+ ++++L+ + + +M ++ + + + + L
Sbjct: 230 GMKKNDDRMATVNQVLEGFSQTDRM--ALMDDMVTKQPVEKKAEDAKASFL 278
>gi|300939309|ref|ZP_07153983.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 21-1]
gi|300455816|gb|EFK19309.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 21-1]
Length = 272
Score = 39.8 bits (91), Expect = 0.47, Method: Composition-based stats.
Identities = 22/258 (8%), Positives = 61/258 (23%), Gaps = 21/258 (8%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
+ + ++ + + + +E G + + + N
Sbjct: 26 QSSSDAKHIKVGVINGAEQDV-AEVAKKVAKEKYGLDVELVGFSGSLLPNDATN---HGE 81
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
+ F+ + KLVA G++ IK+ I +
Sbjct: 82 LDANVFQHRPFLEQDNQAHGYKLVAV-----GNTFVFPMAGYSKKIKTVAQIKEGATVAI 136
Query: 140 AKIYGIEPGNEGNQRILDMI---NNNKFSLKGFRLIEASELASFSQIRRD-----QRNNI 191
+ +I + + ++ +
Sbjct: 137 PNDPTNLGRALLLLQKEKLITLKEGKGLLPTALDITDNPRHLQIMELEGAQLPRVLDDPK 196
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFS 251
V + + + L+ + E V +V + N+ L++ +
Sbjct: 197 VDVAIISTTYIQQTGLSPVHDSVFIEDKNSP--YVNILVAREDNKNAENVKEFLQSYQ-- 252
Query: 252 VALENEMMKLILNNKQDR 269
+ + + I N
Sbjct: 253 SSEVAKAAETIFNGGALP 270
>gi|157369602|ref|YP_001477591.1| YaeC family lipoprotein [Serratia proteamaculans 568]
gi|157321366|gb|ABV40463.1| lipoprotein, YaeC family [Serratia proteamaculans 568]
Length = 270
Score = 39.8 bits (91), Expect = 0.47, Method: Composition-based stats.
Identities = 26/255 (10%), Positives = 65/255 (25%), Gaps = 22/255 (8%)
Query: 28 VRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSL 87
++ + + + +E G + + + + +KG +
Sbjct: 32 IKVGVINGAEQDV-AEVAKQVAKEKYGLEVELVGFSGSLLPNDATDKG---ELDANVFQH 87
Query: 88 EKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAK---YKKELGAKIYG 144
F+ ++ KLVA G++ IKS +++ L G
Sbjct: 88 RPFLEQQNKDHGYKLVAV-----GNTFVFPMAGYSKKIKSLKELQDGAVIAIPLDPTNLG 142
Query: 145 IEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRD---QRNNIPAVFLSWEPH 201
++ + + ++ Q + P V ++
Sbjct: 143 RALLLLEKTGLITLKPGKGLLPTSLDISANPHNYKIMELEGAQLPQVLDDPKVTIAVIST 202
Query: 202 PINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKL 261
+ + G I +V + PN+ +K + + +
Sbjct: 203 TYINQTGLTPTKDGIFIEDKNSPYTNIIVTREDNKDAPNVQNFIKAYE--SDEVAKAAEK 260
Query: 262 ILNNKQDRQFVGRTM 276
I N +
Sbjct: 261 IFNGG-----AVKGW 270
>gi|317485699|ref|ZP_07944570.1| hypothetical protein HMPREF0179_01923 [Bilophila wadsworthia 3_1_6]
gi|316923064|gb|EFV44279.1| hypothetical protein HMPREF0179_01923 [Bilophila wadsworthia 3_1_6]
Length = 359
Score = 39.8 bits (91), Expect = 0.47, Method: Composition-based stats.
Identities = 29/251 (11%), Positives = 71/251 (28%), Gaps = 14/251 (5%)
Query: 2 YKILAVCLFLTTF-SISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
K+++ L S++ A+ T V A + ++ G +I+
Sbjct: 4 KKLISAFLAAAFCVSLAGMAFAEKLTKVPTAWMDEHETFLIWYAKEKGWDKEAGLDIDIQ 63
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ + N + + L G+ + N + + V
Sbjct: 64 YFGSGM---DILNALPSGSWVFAGMGGVPAMMGNLRYGTSVIAIGNDESMTNSVLVRPDS 120
Query: 121 FAL----GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
K + ++ + K + + + + + + K + +
Sbjct: 121 PIAKVKGYNKDFPEVLGSPDTVKGKTFLTTTVSSAHYGLSSWLKVLGLTDKDITIKNMDQ 180
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
+Q N I W PH + + + G+ + + + Y +
Sbjct: 181 ----AQALAAFDNGIGDGVALWAPH-MYAGQEKGWKIAGDLHMCKVGNPIVLIADTAYAE 235
Query: 237 KCPNI-SRLLK 246
K P I ++ L
Sbjct: 236 KNPEITAKFLS 246
>gi|33594537|ref|NP_882181.1| periplasmic solute-binding protein [Bordetella pertussis Tohama I]
gi|33564613|emb|CAE43931.1| periplasmic solute-binding protein [Bordetella pertussis Tohama I]
gi|332383948|gb|AEE68795.1| periplasmic solute-binding protein [Bordetella pertussis CS]
Length = 322
Score = 39.8 bits (91), Expect = 0.47, Method: Composition-based stats.
Identities = 31/253 (12%), Positives = 69/253 (27%), Gaps = 23/253 (9%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
+A+ ++ A VR+ + W L GY K +
Sbjct: 1 MAIGAAALALPVAGRSWAAQAEAVRYGGSAWLGH------YPAWLAIQAGY---FKAENL 51
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
V + S + A + + + ++ V + +
Sbjct: 52 EVGWESFGTTSARVSALLSGNIDMAVTAAPAALAVMSRGSRHFA----IIGVPENFGRVE 107
Query: 125 IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
+ ++L K G+ + + +L++++ + ++
Sbjct: 108 GLIVRSQVARLEDLKGKKVGVTFASSAHLLVLNLLDQAGLKAGKDVTVLNVPAP---ELP 164
Query: 185 RDQRNNIPAVFLSWEPHP--INSDLNIHYLPGGEEISGFGEASVYT-----VVRSDYLDK 237
++ +W P I + + L S + E V V R +LDK
Sbjct: 165 AAFQSGQIDAAAAWTPQFNAIRAMPDAKVLVDDTSFSLYKEYGVTPGPDVLVARRAFLDK 224
Query: 238 CPNISRLLKNIKF 250
P + F
Sbjct: 225 NPEAVKRFLKAYF 237
>gi|300955348|ref|ZP_07167728.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 175-1]
gi|300317746|gb|EFJ67530.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 175-1]
Length = 272
Score = 39.8 bits (91), Expect = 0.49, Method: Composition-based stats.
Identities = 20/238 (8%), Positives = 57/238 (23%), Gaps = 19/238 (7%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
+ ++ ++ + + + +E G + + + N
Sbjct: 26 QSSNDAKHIKVGVINGAEQDV-AEVAKKVAKEKYGLDVELVGFSGSLLPNDATN---HGE 81
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
+ F+ + KLVA G++ IK+ I +
Sbjct: 82 LDANVFQHRPFLEQDNQAHGYKLVAV-----GNTFVFPMAGYSKKIKTVAQIKEGATVAI 136
Query: 140 AKIYGIEPGNEGNQRILDMI---NNNKFSLKGFRLIEASELASFSQIRRD-----QRNNI 191
+ +I + + ++ +
Sbjct: 137 PNDPTNLGRALLLLQKEKLITLKEGKGLLPTALDITDNPRHLQIMELEGAQLPRVLDDPK 196
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
V + + + L+ + E V +V + N+ L++ +
Sbjct: 197 VDVAIISTTYIQQTGLSPVHDSVFIEDKNSP--YVNILVAREDNKNAENVKEFLQSYQ 252
>gi|300724769|ref|YP_003714094.1| D-methionine ABC transporter periplasmic-binding protein
[Xenorhabdus nematophila ATCC 19061]
gi|297631311|emb|CBJ92006.1| D-methionine transport protein (ABC superfamily, peri_bind)
[Xenorhabdus nematophila ATCC 19061]
Length = 271
Score = 39.8 bits (91), Expect = 0.49, Method: Composition-based stats.
Identities = 28/270 (10%), Positives = 73/270 (27%), Gaps = 22/270 (8%)
Query: 1 MYKILAVCLFLTTFSI-SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+ I + L+T ++ ++ ++ ++ + + ++ G +
Sbjct: 5 LKSIAVIGTLLSTLALVGCGQEQRDPNHIKVGVIVGPELKV-AEVAKQVAKDQYGLDVEL 63
Query: 60 KLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
V SL ID+ + P L + + + +I
Sbjct: 64 TTFNDYVLPNESLSKGDIDVNVFQHKPYLNQQVKERNYKLAIV---------GNSFIFPM 114
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKF-SLKGFRLIEASEL 177
++ IKS ++ + + + + +I + L L S
Sbjct: 115 AAYSKKIKSLDELKEGSQIAIPNDPTNQGRALLLLQKHGLIRLKEGVGLLPTILDITSNP 174
Query: 178 ASF-------SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
Q+ R + A L + + + G + V +V
Sbjct: 175 KQLDIVQLEAPQLPRSLDDQKIAFALI--NNSYAGQIGLTPEQDGIFVEDKDSPYVNIIV 232
Query: 231 RSDYLDKCPNISRLLKNIKFSVALENEMMK 260
+ N+ + +K + +
Sbjct: 233 SREDNKDAENVQKFVKAYQSPEVEQEAQNV 262
>gi|295098969|emb|CBK88058.1| ABC-type metal ion transport system, periplasmic component/surface
antigen [Eubacterium cylindroides T2-87]
Length = 279
Score = 39.8 bits (91), Expect = 0.49, Method: Composition-based stats.
Identities = 32/255 (12%), Positives = 69/255 (27%), Gaps = 12/255 (4%)
Query: 2 YKILAVCLF---LTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN 58
+LA L LT S DA + + + + E LGY
Sbjct: 7 KGLLACALVAAPLTGCSSGSGDDAAEDKTITIGASVTPHAEIINNIVPDL--EELGYTVE 64
Query: 59 IK-LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+ ++L +D P LE ++A + + A + + +
Sbjct: 65 VVEFSDYVKPNQALYEGELDCNYFQHTPYLEDWVANNCKNEDDLVSAAKIHFEPLGIYSS 124
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
+ IA Q I+ + ++E
Sbjct: 125 KHTDVSDVPDGAQIAVPND---TTNEARALQLLQAQGIITLAEGKGLEATKADIVENPHN 181
Query: 178 ASFSQIRRDQ---RNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDY 234
++ + + N ++ + +N+D+ + L S + +
Sbjct: 182 VEIIELAAEVVPTKLNEVDFAIANGNNALNADITDYLLVTESTDSEAADQYANVIAVRKG 241
Query: 235 LDKCPNISRLLKNIK 249
+ I LL ++
Sbjct: 242 DEDSQKIQDLLSVLE 256
>gi|49479066|ref|YP_034633.1| lipoprotein ABC transporter substrate-binding protein [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|49330622|gb|AAT61268.1| ABC transporter, substrate-binding protein; probable NLPA
lipoprotein [Bacillus thuringiensis serovar konkukian
str. 97-27]
Length = 280
Score = 39.8 bits (91), Expect = 0.49, Method: Composition-based stats.
Identities = 37/256 (14%), Positives = 72/256 (28%), Gaps = 20/256 (7%)
Query: 1 MYKILAVCLFLTTFSISYARDADSC---TPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M KILA L + + +D+ VR TG A + E+ G K
Sbjct: 1 MKKILAFALSAIVGISALSGCSDTGTKEKTVRIGVTGTDGNAW--EIVKEKAEKE-GIKV 57
Query: 58 NIKLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ + T ++L + I++ LE+F + + + + Y
Sbjct: 58 KLVEFSDYTTPNKALADGDIELNSFQHIAFLEQFKKEHKLDITAVGTTQIAPMGLYSEKH 117
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPG------NEGNQRILDMINNNKFSLKGFR 170
+ A G + G I N LK
Sbjct: 118 KKANEIPDGSEIAIPNDPTNQARALKLLDAAGLLKLKKDFGLFGDPSGIAENPKKLKITP 177
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
+I + NN A +P + +L + + +++
Sbjct: 178 VIAQQTPRVLKDVAASVINNGVAGQAGLDP-----AKDPIFLEDPKNENAKPYINIFAAR 232
Query: 231 RSDYLDKCPNISRLLK 246
D P + ++++
Sbjct: 233 TKD--KDDPTLKKVIE 246
>gi|218702495|ref|YP_002410124.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli IAI39]
gi|218372481|emb|CAR20357.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli IAI39]
Length = 272
Score = 39.8 bits (91), Expect = 0.50, Method: Composition-based stats.
Identities = 20/238 (8%), Positives = 56/238 (23%), Gaps = 19/238 (7%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
+ + ++ + + + +E G + + + N
Sbjct: 26 QSSSDAKHIKVGVINGAEQDV-AEVAKKVAKEKYGLDVELVGFSGSLLPNDATN---HGE 81
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
+ F+ + KLVA G++ IK+ I +
Sbjct: 82 LDANVFQHRPFLEQDNQAHGYKLVAV-----GNTFVFPMAGYSKKIKTVAQIKEGATVAI 136
Query: 140 AKIYGIEPGNEGNQRILDMI---NNNKFSLKGFRLIEASELASFSQIRRD-----QRNNI 191
+ +I + + ++ +
Sbjct: 137 PNDPTNLGRALLLLQKEKLIILKEGKGLLPTALDITDNPRHLQIMELEGAQLPRVLDDPK 196
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
V + + + L+ + E V +V + N+ L++ +
Sbjct: 197 VDVAIISTTYIQQTGLSPVHDSVFIEDKNSP--YVNILVAREDNKNAENVKEFLQSYQ 252
>gi|150389208|ref|YP_001319257.1| NMT1/THI5 like protein [Alkaliphilus metalliredigens QYMF]
gi|149949070|gb|ABR47598.1| NMT1/THI5 like protein [Alkaliphilus metalliredigens QYMF]
Length = 333
Score = 39.8 bits (91), Expect = 0.51, Method: Composition-based stats.
Identities = 30/280 (10%), Positives = 81/280 (28%), Gaps = 30/280 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMT-SVILEEILGYKTNI 59
++ ++ V L ++ ++ + + T ++ + + A + S E G +
Sbjct: 6 IFSVIIVLLMVSAIVLTGCQGSSDLTKIQVMEVTHSVFYAPQYVALSEGFFEEEGLDVEL 65
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ + +G+ P ++ + A+ Q + +
Sbjct: 66 IDGQGADKVMAALLSN-QVEIGFMGPEASVYVYNQGMDDHAVNFAQLTQRDGSFIVAREP 124
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKF---SLKGFRLIEASE 176
++ + G E + +M L +
Sbjct: 125 NPNFTLEDLR--------------GKEILGGRRGGMPNMTLEYVLKNNGLIPGEDLNVRT 170
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNI--HYLPGGEEISGFGEASVYTVVRSDY 234
F + +EP + + + + E SG+ +VY+ R Y
Sbjct: 171 DIQFGVMAGAFAGGEGDYTTLFEPTASQMEKDGLGYVVASVGEESGYIPYTVYS-ARKSY 229
Query: 235 LDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGR 274
++K P I + N + M + ++ + + +
Sbjct: 230 MEKNPEIIQSFSN------AIYKGMLWVESH--SAEEIAK 261
>gi|260683100|ref|YP_003214385.1| putative aliphatic sulfonates ABC transporter substrate-binding
lipoprotein [Clostridium difficile CD196]
gi|260686698|ref|YP_003217831.1| putative aliphatic sulfonates ABC transporter substrate-binding
lipoprotein [Clostridium difficile R20291]
gi|260209263|emb|CBA62580.1| putative aliphatic sulfonates ABC transporter, substrate-binding
lipoprotein [Clostridium difficile CD196]
gi|260212714|emb|CBE03811.1| putative aliphatic sulfonates ABC transporter, substrate-binding
lipoprotein [Clostridium difficile R20291]
Length = 319
Score = 39.8 bits (91), Expect = 0.51, Method: Composition-based stats.
Identities = 24/170 (14%), Positives = 51/170 (30%), Gaps = 12/170 (7%)
Query: 106 NLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFS 165
N G K + + + D K K+L K G +Q ++ + ++
Sbjct: 105 NGVGLKITNIYSRSPKGYMLITNNDNIKSIKDLKGKKIVGPKGTILHQLLIAALAKEGYT 164
Query: 166 LKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEAS 225
+ + + V + P + + + + E G
Sbjct: 165 IDDVEYVNMD----IPSAASALESKSADVAMLAGPVALKTINSGAKMIVNGEGLVSGI-- 218
Query: 226 VYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRT 275
+ T V D+ +K P + + + E +K + NK + V
Sbjct: 219 IVTAVSDDFAEKYPELVKRFMKVH------EETLKYMNENKDEVMDVVSK 262
>gi|170680545|ref|YP_001745979.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli SMS-3-5]
gi|170518263|gb|ACB16441.1| lipoprotein NlpA [Escherichia coli SMS-3-5]
Length = 272
Score = 39.8 bits (91), Expect = 0.51, Method: Composition-based stats.
Identities = 20/238 (8%), Positives = 56/238 (23%), Gaps = 19/238 (7%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
+ + ++ + + + +E G + + + N
Sbjct: 26 QSSSDAKHIKVGVINGAEQDV-AEVAKKVAKEKYGLDVELVGFSGSLLPNDATN---HGE 81
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
+ F+ + KLVA G++ IK+ I +
Sbjct: 82 LDANVFQHRPFLEQDNQAHGYKLVAV-----GNTFVFPMAGYSKKIKTVAQIKEGATVAI 136
Query: 140 AKIYGIEPGNEGNQRILDMI---NNNKFSLKGFRLIEASELASFSQIRRD-----QRNNI 191
+ +I + + ++ +
Sbjct: 137 PNDPTNLGRALLLLQKEKLITLKEGKGLLPTALDITDNPRHLQIMELEGAQLPRVLDDPK 196
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
V + + + L+ + E V +V + N+ L++ +
Sbjct: 197 VDVAIISTTYIQQTGLSPVHDSVFIEDKNSP--YVNILVAREDNKNAENVKEFLQSYQ 252
>gi|296451486|ref|ZP_06893222.1| sulfonate ABC superfamily ATP binding cassette transporter, binding
protein [Clostridium difficile NAP08]
gi|296880163|ref|ZP_06904130.1| sulfonate ABC superfamily ATP binding cassette transporter, binding
protein [Clostridium difficile NAP07]
gi|296259661|gb|EFH06520.1| sulfonate ABC superfamily ATP binding cassette transporter, binding
protein [Clostridium difficile NAP08]
gi|296428888|gb|EFH14768.1| sulfonate ABC superfamily ATP binding cassette transporter, binding
protein [Clostridium difficile NAP07]
Length = 330
Score = 39.8 bits (91), Expect = 0.52, Method: Composition-based stats.
Identities = 41/283 (14%), Positives = 79/283 (27%), Gaps = 24/283 (8%)
Query: 2 YKILAV---CLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAM-----TSVILEEIL 53
KILAV + + ++ + D + T + ILE+
Sbjct: 6 KKILAVMTSLIMVLVGTVGCSTTNDKKDEPAKKEASLPKEINLTYVKSPLNVPSILEKKD 65
Query: 54 G-YKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKY 112
+ K + V F L E L S + A N G K
Sbjct: 66 DLFGKEFKKDNIKVNFHELTTGPEQTQALAAG---ELDFLHALGGTSAIIAASNGVGLKI 122
Query: 113 MLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ + + + K K+L K G +Q ++ + +++ +
Sbjct: 123 TNIYSRSPKGYMLITNNENIKSIKDLKGKKIVGPKGTILHQLLIAALAKEGYTIDDVEYV 182
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRS 232
+ V + P + + + + E G + T V
Sbjct: 183 NMD----IPSAASALESKSADVAMLAGPVALKTINSGAKMIVNGEGLVSGI--IVTAVSD 236
Query: 233 DYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRT 275
D+ +K P + + + E +K + NK V
Sbjct: 237 DFAEKYPELVKRFMKVH------EETLKYMNENKDKVMDVVSK 273
>gi|293417121|ref|ZP_06659748.1| metQ [Escherichia coli B185]
gi|331665294|ref|ZP_08366195.1| lipoprotein 28 [Escherichia coli TA143]
gi|291431152|gb|EFF04145.1| metQ [Escherichia coli B185]
gi|331057804|gb|EGI29790.1| lipoprotein 28 [Escherichia coli TA143]
Length = 272
Score = 39.8 bits (91), Expect = 0.52, Method: Composition-based stats.
Identities = 20/238 (8%), Positives = 56/238 (23%), Gaps = 19/238 (7%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
+ + ++ + + + +E G + + + N
Sbjct: 26 QSSSDAKHIKVGVINGAEQDV-AEVAKKVAKEKYGLDVELVGFSGSLLPNDATN---HGE 81
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
+ F+ + KLVA G++ IK+ I +
Sbjct: 82 LDANVFQHRPFLEQDNQAHGYKLVAV-----GNTFVFPMAGYSKKIKTVAQIKEGATVAI 136
Query: 140 AKIYGIEPGNEGNQRILDMI---NNNKFSLKGFRLIEASELASFSQIRRD-----QRNNI 191
+ +I + + ++ +
Sbjct: 137 PNDPTNLGRALLLLQKEKLITLKEGKGLLPTALDITDNPRHLQIMELEGAQLPRVLDDPK 196
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
V + + + L+ + E V +V + N+ L++ +
Sbjct: 197 VDVAIISTTYIQQTGLSPVHDSVFIEDKNSP--YVNILVAREDNKNAENVKEFLQSYQ 252
>gi|16131531|ref|NP_418117.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli str. K-12
substr. MG1655]
gi|89110352|ref|AP_004132.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli str. K-12
substr. W3110]
gi|157155413|ref|YP_001465144.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli E24377A]
gi|170083167|ref|YP_001732487.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli str. K-12
substr. DH10B]
gi|191165846|ref|ZP_03027684.1| lipoprotein NlpA [Escherichia coli B7A]
gi|193063858|ref|ZP_03044945.1| lipoprotein NlpA [Escherichia coli E22]
gi|194428085|ref|ZP_03060629.1| lipoprotein NlpA [Escherichia coli B171]
gi|209921135|ref|YP_002295219.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli SE11]
gi|218556225|ref|YP_002389138.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli IAI1]
gi|218697382|ref|YP_002405049.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli 55989]
gi|238902751|ref|YP_002928547.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli BW2952]
gi|256021323|ref|ZP_05435188.1| cytoplasmic membrane lipoprotein-28 [Shigella sp. D9]
gi|256025608|ref|ZP_05439473.1| cytoplasmic membrane lipoprotein-28 [Escherichia sp. 4_1_40B]
gi|260846554|ref|YP_003224332.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli O103:H2 str.
12009]
gi|260857928|ref|YP_003231819.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli O26:H11 str.
11368]
gi|293463985|ref|ZP_06664399.1| metQ [Escherichia coli B088]
gi|300822433|ref|ZP_07102573.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 119-7]
gi|300917519|ref|ZP_07134177.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 115-1]
gi|300950007|ref|ZP_07163957.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 116-1]
gi|301028440|ref|ZP_07191686.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 196-1]
gi|301644328|ref|ZP_07244330.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 146-1]
gi|307140360|ref|ZP_07499716.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli H736]
gi|307313270|ref|ZP_07592895.1| lipoprotein, YaeC family [Escherichia coli W]
gi|309795797|ref|ZP_07690212.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 145-7]
gi|331644380|ref|ZP_08345509.1| lipoprotein 28 [Escherichia coli H736]
gi|331670503|ref|ZP_08371342.1| lipoprotein 28 [Escherichia coli TA271]
gi|331679755|ref|ZP_08380425.1| lipoprotein 28 [Escherichia coli H591]
gi|332282555|ref|ZP_08394968.1| cytoplasmic membrane lipoprotein-28 [Shigella sp. D9]
gi|128372|sp|P04846|NLPA_ECOLI RecName: Full=Lipoprotein 28; Flags: Precursor
gi|146649|gb|AAA24080.1| lipoprotein-28 precursor [Escherichia coli]
gi|290510|gb|AAA62013.1| lipoprotein-28 [Escherichia coli]
gi|1790093|gb|AAC76684.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli str. K-12
substr. MG1655]
gi|85676383|dbj|BAE77633.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli str. K12
substr. W3110]
gi|157077443|gb|ABV17151.1| lipoprotein NlpA [Escherichia coli E24377A]
gi|169891002|gb|ACB04709.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli str. K-12
substr. DH10B]
gi|190904170|gb|EDV63881.1| lipoprotein NlpA [Escherichia coli B7A]
gi|192930573|gb|EDV83180.1| lipoprotein NlpA [Escherichia coli E22]
gi|194413843|gb|EDX30121.1| lipoprotein NlpA [Escherichia coli B171]
gi|209914394|dbj|BAG79468.1| putative lipoprotein [Escherichia coli SE11]
gi|218354114|emb|CAV00682.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli 55989]
gi|218362993|emb|CAR00631.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli IAI1]
gi|238860715|gb|ACR62713.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli BW2952]
gi|257756577|dbj|BAI28079.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli O26:H11 str.
11368]
gi|257761701|dbj|BAI33198.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli O103:H2 str.
12009]
gi|260447320|gb|ACX37742.1| lipoprotein, YaeC family [Escherichia coli DH1]
gi|291321617|gb|EFE61053.1| metQ [Escherichia coli B088]
gi|299878551|gb|EFI86762.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 196-1]
gi|300415255|gb|EFJ98565.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 115-1]
gi|300450621|gb|EFK14241.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 116-1]
gi|300525080|gb|EFK46149.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 119-7]
gi|301077366|gb|EFK92172.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 146-1]
gi|306906953|gb|EFN37462.1| lipoprotein, YaeC family [Escherichia coli W]
gi|308120676|gb|EFO57938.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 145-7]
gi|309704111|emb|CBJ03458.1| lipoprotein-28 [Escherichia coli ETEC H10407]
gi|315062967|gb|ADT77294.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli W]
gi|315138242|dbj|BAJ45401.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli DH1]
gi|315618635|gb|EFU99221.1| D-methionine-binding lipoprotein metQ [Escherichia coli 3431]
gi|320201312|gb|EFW75893.1| Methionine ABC transporter substrate-binding protein [Escherichia
coli EC4100B]
gi|323155332|gb|EFZ41515.1| D-methionine-binding lipoprotein metQ [Escherichia coli EPECa14]
gi|323160896|gb|EFZ46820.1| D-methionine-binding lipoprotein metQ [Escherichia coli E128010]
gi|323376439|gb|ADX48707.1| lipoprotein, YaeC family [Escherichia coli KO11]
gi|323934794|gb|EGB31176.1| YaeC family lipoprotein [Escherichia coli E1520]
gi|323939155|gb|EGB35369.1| YaeC family lipoprotein [Escherichia coli E482]
gi|323944129|gb|EGB40209.1| YaeC family lipoprotein [Escherichia coli H120]
gi|324019701|gb|EGB88920.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 117-3]
gi|331036674|gb|EGI08900.1| lipoprotein 28 [Escherichia coli H736]
gi|331062565|gb|EGI34485.1| lipoprotein 28 [Escherichia coli TA271]
gi|331072927|gb|EGI44252.1| lipoprotein 28 [Escherichia coli H591]
gi|332104907|gb|EGJ08253.1| cytoplasmic membrane lipoprotein-28 [Shigella sp. D9]
gi|332345649|gb|AEE58983.1| D-methionine-binding lipoprotein MetQ [Escherichia coli UMNK88]
Length = 272
Score = 39.8 bits (91), Expect = 0.52, Method: Composition-based stats.
Identities = 20/238 (8%), Positives = 56/238 (23%), Gaps = 19/238 (7%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
+ + ++ + + + +E G + + + N
Sbjct: 26 QSSSDAKHIKVGVINGAEQDV-AEVAKKVAKEKYGLDVELVGFSGSLLPNDATN---HGE 81
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
+ F+ + KLVA G++ IK+ I +
Sbjct: 82 LDANVFQHRPFLEQDNQAHGYKLVAV-----GNTFVFPMAGYSKKIKTVAQIKEGATVAI 136
Query: 140 AKIYGIEPGNEGNQRILDMI---NNNKFSLKGFRLIEASELASFSQIRRD-----QRNNI 191
+ +I + + ++ +
Sbjct: 137 PNDPTNLGRALLLLQKEKLITLKEGKGLLPTALDITDNPRHLQIMELEGAQLPRVLDDPK 196
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
V + + + L+ + E V +V + N+ L++ +
Sbjct: 197 VDVAIISTTYIQQTGLSPVHDSVFIEDKNSP--YVNILVAREDNKNAENVKEFLQSYQ 252
>gi|157163142|ref|YP_001460460.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli HS]
gi|170018099|ref|YP_001723053.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli ATCC 8739]
gi|331655315|ref|ZP_08356314.1| lipoprotein 28 [Escherichia coli M718]
gi|157068822|gb|ABV08077.1| lipoprotein NlpA [Escherichia coli HS]
gi|169753027|gb|ACA75726.1| lipoprotein, YaeC family [Escherichia coli ATCC 8739]
gi|331047330|gb|EGI19408.1| lipoprotein 28 [Escherichia coli M718]
Length = 272
Score = 39.8 bits (91), Expect = 0.52, Method: Composition-based stats.
Identities = 20/238 (8%), Positives = 56/238 (23%), Gaps = 19/238 (7%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
+ + ++ + + + +E G + + + N
Sbjct: 26 QSSSDAKHIKVGVINGAEQDV-AEVAKKVAKEKYGLDVELVGFSGSLLPNDATN---HGE 81
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
+ F+ + KLVA G++ IK+ I +
Sbjct: 82 LDANVFQHRPFLEQDNQAHGYKLVAV-----GNTFVFPMAGYSKKIKTVAQIKEGATVAI 136
Query: 140 AKIYGIEPGNEGNQRILDMI---NNNKFSLKGFRLIEASELASFSQIRRD-----QRNNI 191
+ +I + + ++ +
Sbjct: 137 PNDPTNLGRALLLLQKEKLITLKEGKGLLPTALDITDNPRHLQIMELEGAQLPRVLDDPK 196
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
V + + + L+ + E V +V + N+ L++ +
Sbjct: 197 VDVAIISTTYIQQTGLSPVHDSVFIEDKNSP--YVNILVAREDNKNAENVKEFLQSYQ 252
>gi|306828815|ref|ZP_07462007.1| Fe3+ ABC superfamily ATP binding cassette transporter, binding
protein [Streptococcus mitis ATCC 6249]
gi|304428993|gb|EFM32081.1| Fe3+ ABC superfamily ATP binding cassette transporter, binding
protein [Streptococcus mitis ATCC 6249]
Length = 360
Score = 39.8 bits (91), Expect = 0.53, Method: Composition-based stats.
Identities = 35/283 (12%), Positives = 83/283 (29%), Gaps = 41/283 (14%)
Query: 1 MYKILAVC----LFLTTFSISYARDA------DSCTPVRFADTGWTDIAATTAMTSVILE 50
M K L++ +FL S +A D+ + + + + E
Sbjct: 15 MKKKLSLLSFSWIFLLLSGCSSTTEAETSIENDTDKTLVVYSPN-PEDLIEETIPAF--E 71
Query: 51 EILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFI-----------APYLEEGS 99
E G K ++ + F+ + + + +P ++
Sbjct: 72 EKYGIKVDLVQASTGELFKKAEAEKEAPVADVIFGGSYALFSSNEKLFEPYTSPENDQII 131
Query: 100 IKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNE--------- 150
+ + Y L V+ + + I Y L K+ G +
Sbjct: 132 PEYQNKTGFYTPYTLDVSVLIVNSALTKDIKIEGYDDLLNPKLKGKIATADPSNSSSAFA 191
Query: 151 ------GNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWE--PHP 202
+Q + + F L++ +S S + + + AV L++E
Sbjct: 192 QLTNMLVDQGGYENEQAWTYVKNLFSLVDGKIASSSSNVYKSVADGEMAVGLTYEDPALK 251
Query: 203 INSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
+ +D + +E + F + + + +++ L
Sbjct: 252 LLNDGVDVKVIYPKEGTVFLPGNAAIIKNAKHMENAKKFIDFL 294
>gi|257455632|ref|ZP_05620861.1| putative aliphatic sulfonates-binding protein [Enhydrobacter
aerosaccus SK60]
gi|257446915|gb|EEV21929.1| putative aliphatic sulfonates-binding protein [Enhydrobacter
aerosaccus SK60]
Length = 338
Score = 39.8 bits (91), Expect = 0.53, Method: Composition-based stats.
Identities = 39/273 (14%), Positives = 77/273 (28%), Gaps = 50/273 (18%)
Query: 1 MYKILAVCLFLTTFSI------------SYARDADSCTP-------------VRFADTGW 35
M K+ A+ + + S+ + A + + VR
Sbjct: 1 MKKVSALLISGFSISLLLAGCQQNTTKSANAANTNEAKTNDSKSGDAKPLEEVRIGLQ-- 58
Query: 36 TDIAATTAM-TSVILEEIL---GYKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKF 90
A + S +LE+ L G K N P +L ID P +
Sbjct: 59 -SSGALVYLRESKLLEKSLEKSGIKVNWVQFQSGPPMLEALNTNNIDFGTTGDTPPIFA- 116
Query: 91 IAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNE 150
+ NL Y I K EL K + G+
Sbjct: 117 ----------QAAGSNLVYVAYEK--PSPQSEAVIVPANSTLKSVAELKGKSVAVTKGSS 164
Query: 151 GNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIH 210
N +L + +K S + + + + + WEP+ ++ + +
Sbjct: 165 ANYTLLKALERDKLSFADIDVKYLQPSDARA----AFESGKLDAWTVWEPYLSSAKIELK 220
Query: 211 YLPGGEEISGFGEASVYTVVRSDYLDKCPNISR 243
+ + + + +D+ K P++ +
Sbjct: 221 ARVLTDATGLKPNNTSFYLASTDFAQKHPDVVK 253
>gi|218677394|ref|ZP_03525291.1| Substrate-binding region of ABC-type glycine betaine transport
system [Rhizobium etli CIAT 894]
Length = 120
Score = 39.8 bits (91), Expect = 0.53, Method: Composition-based stats.
Identities = 16/120 (13%), Positives = 31/120 (25%), Gaps = 10/120 (8%)
Query: 71 LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL-QGAKYMLAVNDVGFALG----- 124
++ D+ W L + + ++EG I A L G +
Sbjct: 1 MEKSEPDVSSETWVDLLPEIVPRGVKEGKIVFGAPALPDGGIQGWWIPKYVADAHPEIKT 60
Query: 125 ----IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ + ++ G + K + KGF L+ A
Sbjct: 61 VEDALAHPDLFPDQEDPSKGVVFNGAEGWGATVVTTQLFKAYKAADKGFTLMNPGSAAGL 120
>gi|116048808|ref|YP_792392.1| C4-dicarboxylate-binding periplasmic protein [Pseudomonas
aeruginosa UCBPP-PA14]
gi|115584029|gb|ABJ10044.1| probable C4-dicarboxylate-binding periplasmic protein [Pseudomonas
aeruginosa UCBPP-PA14]
Length = 331
Score = 39.8 bits (91), Expect = 0.53, Method: Composition-based stats.
Identities = 31/283 (10%), Positives = 79/283 (27%), Gaps = 31/283 (10%)
Query: 1 MYKILA-VCLFLTTFSISYARDADSCTPVRFADT---GWTDIAATTAMTSVILEEILGYK 56
M+K + L S +A ++F+ + ++E+ LG +
Sbjct: 1 MFKTMVRALLCALAIGGSCLANAAQPIVIKFSHVVAENTPKGQ-GALLFKKLVEQRLGGR 59
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLE-KFIAPYLEEGSIKLVAENLQGAK---- 111
+ + F K + + Y + I + +
Sbjct: 60 VEVDVYPNSSLFGDGKEMEALLLGDVQMLAPSLAKFEQYTRKVQIFDLPFLFDDIQAVDR 119
Query: 112 -----YMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSL 166
A+ GI K+L A +EP + + ++ +
Sbjct: 120 FQRSPQGRALLTSMQGKGILGLAYWHNGMKQLSANRPLLEPE-DARGLKFRVQASDVLNE 178
Query: 167 KGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV 226
+ +L S SF+++ + + + S+ + ++ +
Sbjct: 179 QFRQLRAISRKMSFAEVYQGLQTGVVN-----GTENTWSNYESQKVNEVQKYFTESNHGL 233
Query: 227 Y---TVVRSDYLDKCP-NISRLLKNIKFSVALENEMMKLILNN 265
+ + + + P +I L+ I +E+ +
Sbjct: 234 VDYMVITNAKFWNGLPADIREALQRI------MDEVTVQVNIE 270
>gi|323975121|gb|EGB70226.1| YaeC family lipoprotein [Escherichia coli TW10509]
gi|327250789|gb|EGE62491.1| D-methionine-binding lipoprotein metQ [Escherichia coli STEC_7v]
Length = 272
Score = 39.8 bits (91), Expect = 0.53, Method: Composition-based stats.
Identities = 21/238 (8%), Positives = 56/238 (23%), Gaps = 19/238 (7%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
+ + ++ + + + +E G + + + N
Sbjct: 26 QSSSDEKHIKVGVINGAEQDV-AEVAKKVAKEKYGLDVELVGFSGSLLPNDATN---HGE 81
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
+ F+ + KLVA G++ IK+ I +
Sbjct: 82 LDANVFQHRPFLEQDNQAHGYKLVAV-----GNTFVFPMAGYSKKIKTVAQIKEGATVAI 136
Query: 140 AKIYGIEPGNEGNQRILDMI---NNNKFSLKGFRLIEASELASFSQIRRD-----QRNNI 191
+ +I + E ++ +
Sbjct: 137 PNDPTNLGRALLLLQKEKLITLKEGKGLLPTALDITENPRHLQIMELEGAQLPRVLDDPK 196
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
V + + + L+ + E V +V + N+ L++ +
Sbjct: 197 VDVAIISTTYIQQTGLSPVHDSVFIEDKNSP--YVNILVAREDNKNAENVKEFLQSYQ 252
>gi|94987869|ref|YP_595970.1| ABC transporter amino acid-binding protein [Streptococcus pyogenes
MGAS9429]
gi|94541377|gb|ABF31426.1| ABC transporter amino acid-binding protein [Streptococcus pyogenes
MGAS9429]
Length = 528
Score = 39.8 bits (91), Expect = 0.53, Method: Composition-based stats.
Identities = 31/291 (10%), Positives = 69/291 (23%), Gaps = 27/291 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFAD------TGWTDIAATTAMTSVILEE--- 51
M K++ CL A + +R WT A+ +V +E
Sbjct: 7 MKKLILSCLVALALLFGGMSRAQANQYLRVGMEAAYAPFNWTQDDASNG--AVPIEGTSQ 64
Query: 52 -ILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGA 110
GY + + L + G I S N
Sbjct: 65 YANGYDVQVAKKVAKAMNKELLV-VKTSWTGLIPALTSGKIDMIAAGMSPTKERRNEISF 123
Query: 111 KYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
+ + AK K+ + G + +
Sbjct: 124 SNSYYTSQPVLVVTANGKYAEAKSLKDFSGAKVTAQQGVWHVNLLTQLKGAK--LQTPMG 181
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
A S + + P + + + + E+ V
Sbjct: 182 DFSQMRQALTSGVIDAYISERPEAMTAEAADSRLKMITLK------KGFAVAESDAAIAV 235
Query: 231 -RSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNK---QDRQFVGRTML 277
D+ ++++L+ + + +M ++ + + + + L
Sbjct: 236 GMKKNDDRMATVNQVLEGFSQTDRM--ALMDDMVTKQPVEKKAEDAKASFL 284
>gi|34498313|ref|NP_902528.1| taurine transport system substrate-binding protein [Chromobacterium
violaceum ATCC 12472]
gi|34104167|gb|AAQ60526.1| taurine transport system substrate-binding protein [Chromobacterium
violaceum ATCC 12472]
Length = 329
Score = 39.8 bits (91), Expect = 0.55, Method: Composition-based stats.
Identities = 11/72 (15%), Positives = 20/72 (27%), Gaps = 1/72 (1%)
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYT-VVRSDYLDKCP 239
+I + W+P L E++ +G + VVR D+ P
Sbjct: 165 GEIAAAWQRGDIDAAYVWDPALGKIKPGGAVLTSSAEVAKWGAPTYDIWVVRKDFAAAHP 224
Query: 240 NISRLLKNIKFS 251
+
Sbjct: 225 EFVSRFAKVSLD 236
>gi|319794602|ref|YP_004156242.1| sulfonate/nitrate transport system substrate-binding protein
[Variovorax paradoxus EPS]
gi|315597065|gb|ADU38131.1| putative sulfonate/nitrate transport system substrate-binding
protein [Variovorax paradoxus EPS]
Length = 336
Score = 39.8 bits (91), Expect = 0.55, Method: Composition-based stats.
Identities = 30/291 (10%), Positives = 74/291 (25%), Gaps = 34/291 (11%)
Query: 1 MYKIL-------AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL 53
M K+L L + ++A+ V W + L +
Sbjct: 1 MKKLLPSMLAVAVTALATFAIAPAHAQAEKPKDKVTL-MLNW---YLYSEHAPFFLGKEK 56
Query: 54 GYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
G+ +G + + + Y++ ++ A K
Sbjct: 57 GFYAE-------EGIDLDIQEGRGSAVTAQAVAAKSATFGYIDVTTMIKAAAKGAPLKST 109
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+ V + + K K++ K + PG+ +Q + N +++
Sbjct: 110 GVLFQVSPMSVMGFSEKNIKTPKDIIGKTVAVTPGDSMSQMWPLFLKVNDIKPDQVKIVS 169
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIH-YLPGGEEISGFGEASVY--TVV 230
N + L + + + G + +
Sbjct: 170 GDGQTKL----NAVTNGQADLLLGYVMDQAIKLQDATGKPVTPIRFADSGVNQISSGIIT 225
Query: 231 RSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHP 281
+ L + P++ + K ++ + ML+ +P
Sbjct: 226 NKNLLTENPDLVKRF---------MRASTKAAEAAEKSPESAVDAMLKANP 267
>gi|309389668|gb|ADO77548.1| Substrate-binding region of ABC-type glycine betaine transport
system [Halanaerobium praevalens DSM 2228]
Length = 355
Score = 39.8 bits (91), Expect = 0.55, Method: Composition-based stats.
Identities = 32/288 (11%), Positives = 79/288 (27%), Gaps = 43/288 (14%)
Query: 2 YKILAVCLFLTTFSISYARDADSC----------TPVRFADTGWTDIAATTAMTSVILEE 51
K L + + + I A + + F + + ++
Sbjct: 7 KKTLLLFVIIGLAFILTACGNNQAENTEESKNLPDEINFGILRVPNDQTIA-IAQGFFDD 65
Query: 52 IL---GYKT-NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL 107
G K + ++L + ID ++ + + + E L
Sbjct: 66 YFTERGIKVNTRVFDSGVEANQALASGSIDFATMGNTNAITALAREL--KVELIWIHEVL 123
Query: 108 QGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
LAV D K K+L K + + + +L+++ +
Sbjct: 124 GEN-EALAVKD----------GSGIKKVKDLAGKRVAVPFASTSHYILLNVLKEAGIEKE 172
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
L ++I +W+P + L ++++ G +
Sbjct: 173 VQLL-----DMQTAEIVAAWERGDVQAAYTWQPTLAQLLKSGSTLTNSKKMADKGYITAN 227
Query: 228 T-VVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGR 274
VVR ++ K P + + + + + + + +
Sbjct: 228 IDVVRKEFSQKYPELVA---------DFISALSQAGDIYRNNPEKAAK 266
>gi|282901008|ref|ZP_06308941.1| ABC transporter, substrate-binding protein, aliphatic sulphonates
[Cylindrospermopsis raciborskii CS-505]
gi|281194099|gb|EFA69063.1| ABC transporter, substrate-binding protein, aliphatic sulphonates
[Cylindrospermopsis raciborskii CS-505]
Length = 365
Score = 39.8 bits (91), Expect = 0.55, Method: Composition-based stats.
Identities = 35/246 (14%), Positives = 62/246 (25%), Gaps = 39/246 (15%)
Query: 51 EILGYKTNI-KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQG 109
E LGYK + LA P +L G+DI P + + L A + G
Sbjct: 91 EPLGYKVEWPEFLAGPQQLEALNAGGLDIAATAESP---PVFSQSAGVPLVYLAANSSDG 147
Query: 110 AKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
A L V A K + K G + L L
Sbjct: 148 ASISLLVPTNSSAKNFKD---LKGKKIAFQKASIG-------HYLTLRAAEKEGLKLSDV 197
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV 229
+ + + + WEP + + +G + + +
Sbjct: 198 ESVFLPPPDANA----AFSQGKVDGWFVWEPFATRNVQKKVGRVLLDGSNGLRDTNNFYS 253
Query: 230 VRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+ + ++ + + + + HP + L
Sbjct: 254 TNRKFYQENREAIKIF------LEELQK---------------AQIWSKNHPKEIAQLLA 292
Query: 290 GVTTFD 295
VT D
Sbjct: 293 DVTQLD 298
>gi|327400484|ref|YP_004341323.1| ABC transporter periplasmic subunit family 3 [Archaeoglobus
veneficus SNP6]
gi|327315992|gb|AEA46608.1| ABC-type transporter, periplasmic subunit family 3 [Archaeoglobus
veneficus SNP6]
Length = 320
Score = 39.8 bits (91), Expect = 0.57, Method: Composition-based stats.
Identities = 34/290 (11%), Positives = 67/290 (23%), Gaps = 35/290 (12%)
Query: 1 MY-KILAVCLFLTTFSISY---------ARDADSCTPVRFADTGWTDIAATTAMTSVILE 50
M K++ L + + A +R D T L
Sbjct: 1 MRWKLIIALLAIAVLFAGCQTEKPESVTSEKATEKVKIRIGLLPIEDTFPVTVAKEGGLF 60
Query: 51 EILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGA 110
E G + I R + +I P + + I +
Sbjct: 61 EKYGVEVEIVPFQSA-LERDAALQAGEIDACIADPLAVILLRNAGYDVRIVSLCLG---- 115
Query: 111 KYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
A + G + + K+L + I M+ +
Sbjct: 116 ----ATPEEGVFAILAAPNSSINSVKDLEGRKIAISSNTIIEYVTDIMLKSYGVENVEKV 171
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
I+ + + + EP + L + + + V
Sbjct: 172 EIKQIPVRMQTLLA-----GQVDAATLPEPLASLAAFRGAKLVLSDAMMDRSISQTVIVF 226
Query: 231 RSDYLDKCPNIS-RLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
R + +D P+ LK E + I N + + +
Sbjct: 227 RGELVDSKPDAVNAFLKAY-------GEAAEKINANPESYRE---EFIEK 266
>gi|293413094|ref|ZP_06655762.1| metQ [Escherichia coli B354]
gi|291468741|gb|EFF11234.1| metQ [Escherichia coli B354]
Length = 270
Score = 39.8 bits (91), Expect = 0.57, Method: Composition-based stats.
Identities = 21/238 (8%), Positives = 56/238 (23%), Gaps = 19/238 (7%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
+ + ++ + + + +E G + + + N
Sbjct: 24 QSSSDEKHIKVGVINGAEQDV-AEVAKKVAKEKYGLDVELVGFSGSLLPNDATN---HGE 79
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
+ F+ + KLVA G++ IK+ I +
Sbjct: 80 LDANVFQHRPFLEQDNQAHGYKLVAV-----GNTFVFPMAGYSKKIKTVAQIKEGATVAI 134
Query: 140 AKIYGIEPGNEGNQRILDMI---NNNKFSLKGFRLIEASELASFSQIRRD-----QRNNI 191
+ +I + E ++ +
Sbjct: 135 PNDPTNLGRALLLLQKEKLITLKEGKGLLPTALDITENPRHLQIMELEGAQLPRVLDDPK 194
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
V + + + L+ + E V +V + N+ L++ +
Sbjct: 195 VDVAIISTTYIQQTGLSPVHDSVFIEDKNSP--YVNILVAREDNKNAENVKEFLQSYQ 250
>gi|269102734|ref|ZP_06155431.1| ABC-type tungstate transport system binding protein
[Photobacterium damselae subsp. damselae CIP 102761]
gi|268162632|gb|EEZ41128.1| ABC-type tungstate transport system binding protein
[Photobacterium damselae subsp. damselae CIP 102761]
Length = 274
Score = 39.8 bits (91), Expect = 0.57, Method: Composition-based stats.
Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 9/99 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDAD---SCTPVRFADTGWTDIAATTAMTSVIL---EEILG 54
M + + L + S A AD +R A T + + +L ++ G
Sbjct: 1 MKLLKTALVILGFAATSMAHAADTTKENKTIRLAT---TTSTYHSGLLDYLLPEFKKDTG 57
Query: 55 YKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP 93
Y ++ R +N +D+ M + + F+
Sbjct: 58 YSVDVLAAGTGKALRMGENGDVDLVMTHAPKAEATFVDK 96
>gi|229823381|ref|ZP_04449450.1| hypothetical protein GCWU000282_00679 [Catonella morbi ATCC 51271]
gi|229787156|gb|EEP23270.1| hypothetical protein GCWU000282_00679 [Catonella morbi ATCC 51271]
Length = 339
Score = 39.8 bits (91), Expect = 0.57, Method: Composition-based stats.
Identities = 38/292 (13%), Positives = 80/292 (27%), Gaps = 38/292 (13%)
Query: 9 LFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT-NIKLLAVPVT 67
+ + +A++ V+ G T T + +E + + + P T
Sbjct: 19 FTSLSATPVHAQNEFEGKTVKIGVVGSTMKDIMTYVAEKAAKEGITLEVTELNDYNTPNT 78
Query: 68 FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKS 127
+L + ID+ F + K LQ Y AV ++ KS
Sbjct: 79 --ALLDGDIDM---------NAFQHQVFLDDWNKAHNAELQNIGYTFAVPLRLYSSKYKS 127
Query: 128 YQDIAKYKKELGAKIYGIEPGN----------------EGNQRILDMINNNKFSLKGFRL 171
++ + K + + D I +N ++ L
Sbjct: 128 LDELPEKAKIAISSDPVGSAYAIKVLATDAKLFTLKDPDMESPTKDDIADNPKGIELVEL 187
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVR 231
A S + + ++P + +++ VR
Sbjct: 188 DAAQIPTSMPDVDAGIIQDSFLKATEFKPTDAIYIYG-----DKADTLNLKRTNIF-AVR 241
Query: 232 SDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQ-FVGRTMLRTHPD 282
+ DK + + + + F + + I + + L HPD
Sbjct: 242 KE--DKDNKLYQRIVQL-FQEEDVAKKITEISEGGLIPAWDLVKEYLEKHPD 290
>gi|86748608|ref|YP_485104.1| ABC transporter substrate-binding protein [Rhodopseudomonas
palustris HaA2]
gi|86571636|gb|ABD06193.1| ABC transporter substrate-binding protein [Rhodopseudomonas
palustris HaA2]
Length = 330
Score = 39.8 bits (91), Expect = 0.57, Method: Composition-based stats.
Identities = 25/170 (14%), Positives = 45/170 (26%), Gaps = 25/170 (14%)
Query: 113 MLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
LA + + + + K K L K G L ++ L+
Sbjct: 102 FLARMEYSDLKTVVATKAGIKDKAGLKGKKIAFTAGTGSEVYTLALLKAAGLKKDDVTLV 161
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRS 232
+ F +WEPH N+ + + G + VV
Sbjct: 162 NLRPQEMLPALLS----GSIDAFDTWEPHIANAKKTLGADVAELDTKGIYSETFNIVVMR 217
Query: 233 DYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPD 282
DYL+K + M+ T ++ +P+
Sbjct: 218 DYLEKNGPLMEKF---------MAAMI------------AAETWMKANPE 246
>gi|242240063|ref|YP_002988244.1| substrate-binding region of ABC-type glycine betaine transporter
[Dickeya dadantii Ech703]
gi|242132120|gb|ACS86422.1| Substrate-binding region of ABC-type glycine betaine transport
system [Dickeya dadantii Ech703]
Length = 320
Score = 39.8 bits (91), Expect = 0.58, Method: Composition-based stats.
Identities = 34/248 (13%), Positives = 68/248 (27%), Gaps = 18/248 (7%)
Query: 8 CLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVT 67
+ + TPV +GW A T + + G K ++K++
Sbjct: 12 LSLIAVCLSAAPWVHAEETPVAIGISGWIGFAPLTLADKAGIFQKHGLKVDLKMIPQKDR 71
Query: 68 FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKS 127
++ + I + A + ++L LAV +
Sbjct: 72 HLAVASGAIQCAATTVETYVSWAAAGVRLKQIVQLDKSYGAD---GLAVRNDV------- 121
Query: 128 YQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQ 187
+ G I PG + +++ N S+K ++ S AS +
Sbjct: 122 ----KSVRDLKGKTIGVDAPGTSPYFALAWILDKNGMSIKDVKVATLSPQAS----AQAF 173
Query: 188 RNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKN 247
+S+EP+ + D+L + P + + L
Sbjct: 174 VAGQNDAAMSYEPYLSTIRQQPDKGKIIATTLDYPMVMDTLGCTPDFLKQHPQVGKALVE 233
Query: 248 IKFSVALE 255
F
Sbjct: 234 SYFDALDM 241
>gi|163793718|ref|ZP_02187692.1| possible TrapT family, dctP subunit, C4-dicarboxylate periplasmic
binding protein [alpha proteobacterium BAL199]
gi|159180829|gb|EDP65346.1| possible TrapT family, dctP subunit, C4-dicarboxylate periplasmic
binding protein [alpha proteobacterium BAL199]
Length = 341
Score = 39.8 bits (91), Expect = 0.58, Method: Composition-based stats.
Identities = 44/338 (13%), Positives = 97/338 (28%), Gaps = 39/338 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTA-MTSVILEEILGYKTNI 59
M ++ + L+T SI+ A A++ +R+ + +EE + I
Sbjct: 5 MRMLVQAAVVLSTVSIATAAQAEAEFKLRWGHYLGNSKFLKPEQDFAKAIEERTKGRVTI 64
Query: 60 KLLAVPVTFRSLK----NKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKY--- 112
++ + + I M P + + I V + + A
Sbjct: 65 EIAYAGALGKGNEVLTLAGRGAIDMASVVPGYYADQLRFWKAFQIPFVFSSPKQAIEVSI 124
Query: 113 --MLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL-DMINNNKFSLKGF 169
+ L + + + ++ + G + + + + +
Sbjct: 125 ASYKELPPFKAELDKMNVRFLF-HQPLGQYYLTGPSADCDSVDGLKGKKVRSFGADIPQV 183
Query: 170 RLIEASELASFS--QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
+ + + I + +P N + N Y PG + +
Sbjct: 184 QGAIGAVPVTIGVGDIYEALQRGSLDYSFL---NPGNIEANKLYEPGKYSCGPIMSIAGH 240
Query: 228 TVV-----RSDYLDKCPNISRLLKN--------IKFSVALENEMMKLILNNKQ-----DR 269
+V +I L I F A+E E M+ I
Sbjct: 241 LIVIGNRTWDRLPKDIQDI--FLDQAAKSQAEYIPFLDAIEGEAMEKIKAGGGIFKPFPA 298
Query: 270 QFVGRTMLRTHPDLLKNWLIGVTTFD-GQDPSRQLERF 306
+ + + PDLL W+ G+ G + + +R+
Sbjct: 299 AEMAK-WRKASPDLLAAWVKGMEADGRGAEAAAVAKRW 335
>gi|227535298|ref|ZP_03965347.1| Fe3+ ABC superfamily ATP binding cassette transporter, binding
protein [Lactobacillus paracasei subsp. paracasei ATCC
25302]
gi|227187032|gb|EEI67099.1| Fe3+ ABC superfamily ATP binding cassette transporter, binding
protein [Lactobacillus paracasei subsp. paracasei ATCC
25302]
Length = 352
Score = 39.4 bits (90), Expect = 0.59, Method: Composition-based stats.
Identities = 40/289 (13%), Positives = 82/289 (28%), Gaps = 46/289 (15%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVR----------------FADTGWTDIAATTAM 44
M K+ A L ++ A ++S + ++ +
Sbjct: 1 MKKVWAGLAVLGIAALGLAACSNSTKKTSDSSPTTSKTAKKTDKLVVYSPNSEGLINATI 60
Query: 45 TSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFI---------APYL 95
+ EE G K ++ F+ L+++ +
Sbjct: 61 PAF--EEKYGVKVDLIQAGTGELFKKLESEKGAPVADVIFGGSYTQYATSGDLFQKYTAK 118
Query: 96 EEGSIKLVAENLQGAKYML------AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGN 149
+ ++ N G V + G+ K+L KI +P N
Sbjct: 119 DNNKVEKAYRNTTGYSTPYTLDGSVIVVNPTLTKGMNIKGYGDLLNKDLKGKIATADPAN 178
Query: 150 EGN-----------QRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
+ + + + F L++ +S S + + + AV LS+
Sbjct: 179 SSSAFAQLTNMLAAEGGYTSKKSWNYVKDLFTLVDGKISSSSSNVYKTVSDGEMAVGLSY 238
Query: 199 E--PHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
E + +D + EE + F AS V ++ +D L
Sbjct: 239 EDPTVQLLNDGAKVKIVYPEEGTVFLPASAAIVKKAKNMDNAKKFIDFL 287
>gi|156340231|ref|XP_001620390.1| hypothetical protein NEMVEDRAFT_v1g223166 [Nematostella vectensis]
gi|156205250|gb|EDO28290.1| predicted protein [Nematostella vectensis]
Length = 472
Score = 39.4 bits (90), Expect = 0.62, Method: Composition-based stats.
Identities = 35/263 (13%), Positives = 74/263 (28%), Gaps = 19/263 (7%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRF----ADTGWTDIAATTAMTSVILEEILGYK 56
M+K+ A L S+S A A + P+ T A+ + EE LG K
Sbjct: 207 MFKLTAKALACA-LSLSIAGMAQAADPIVIKFSHVVADHTPKGQGAALFKKLAEERLGDK 265
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLE-KFIAPYLEEGSIKLVAENLQGA----- 110
+++ F K + + Y ++ + + +
Sbjct: 266 VKVEVYPNSSLFGDGKEMEALLLGDVQLIAPSLAKFEQYTKQIQVFDLPFLFKDMAAVDR 325
Query: 111 ----KYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSL 166
A+ I K+L A EP + + +
Sbjct: 326 FQLSPEGQALLKSMEDKNITGLAYWHNGLKQLSANKALREPK-DARGLKFRVQASAVLEE 384
Query: 167 KGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV 226
+ + SF+++ + + + P+ +H + S G
Sbjct: 385 QFKAVKANPRKMSFAEVYQGLQTGVVNGAE--NPYSNIYSQKMHEVQKFITESNHGVLDY 442
Query: 227 YTVVRSDYLDKCP-NISRLLKNI 248
+ + + + P ++ L I
Sbjct: 443 MLITNTKFWNSLPADVRSELDKI 465
>gi|315639814|ref|ZP_07894950.1| Fe3+ ABC superfamily ATP binding cassette transporter, binding
protein [Enterococcus italicus DSM 15952]
gi|315484450|gb|EFU74910.1| Fe3+ ABC superfamily ATP binding cassette transporter, binding
protein [Enterococcus italicus DSM 15952]
Length = 370
Score = 39.4 bits (90), Expect = 0.63, Method: Composition-based stats.
Identities = 35/285 (12%), Positives = 72/285 (25%), Gaps = 43/285 (15%)
Query: 1 MYKILAVCLFLTTFSISYARDADSC------------TPVRFADTGWTDIAATTAMTSVI 48
M K + ++ S + ++ + S
Sbjct: 24 MKKKWLSIAMVGVATLGLTACGSSKEKNSGDKSDSKSDTLVVYSPN-SEGLIKATIPSF- 81
Query: 49 LEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFI-----------APYLEE 97
EE G K + F+ L+++ + + A ++
Sbjct: 82 -EEKYGIKVELIQAGTGELFKKLESEKENPVADVVFGGSYTQYAQSGALFEKYVAKENDK 140
Query: 98 GSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNE------- 150
+ Y L + + + I Y L + G +
Sbjct: 141 VVKEYQNTTGYSTPYTLDGSVLIVNPDLTKGMTIEGYSDLLNDDLKGKIATADPANSSSA 200
Query: 151 --------GNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWE-PH 201
+ D + F LI+ +S S + + + AV LS+E P
Sbjct: 201 FSQLTNMLAAEGGYDNDKAWSYVKDLFTLIDGKISSSSSNVYKTVADGEMAVGLSYEDPS 260
Query: 202 PINSDLNIHYLPG-GEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
+ + +E + F AS + + +D L
Sbjct: 261 VQLLNDGANVKVVYPKEGTVFLPASAAIIKNAKNMDNAKKFIDYL 305
>gi|295399448|ref|ZP_06809430.1| aliphatic sulfonates family ABC transporter, periplasmic
ligand-binding protein [Geobacillus thermoglucosidasius
C56-YS93]
gi|294978914|gb|EFG54510.1| aliphatic sulfonates family ABC transporter, periplasmic
ligand-binding protein [Geobacillus thermoglucosidasius
C56-YS93]
Length = 341
Score = 39.4 bits (90), Expect = 0.63, Method: Composition-based stats.
Identities = 32/239 (13%), Positives = 74/239 (30%), Gaps = 23/239 (9%)
Query: 51 EILGYKTN-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQG 109
E G K I+ + P F ++ + +D P + A + K
Sbjct: 64 EKEGVKVKWIEFQSGPPHFEAMASNNLDFGGVGNSPVISAQAAGIEFKEISKAADGVKGD 123
Query: 110 AKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
A + V +K + K + G+ G + + +
Sbjct: 124 A---IIVPQGSEIQSLKDLKG----------KKIAVAKGSSGFNFLYKALEHAGLKASDV 170
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV 229
+I+ + + + WEP + + + + V
Sbjct: 171 EMIQLQPD----EAQAAFDTRKVDAWAIWEPFISYEVIKKKARIIADGEDLKAYSPSFIV 226
Query: 230 VRSDYLDKCPNI-SRLL----KNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDL 283
R+ ++++ P++ + L K ++ +E +++ K+ + V LR +P L
Sbjct: 227 ARTGFIEEHPDLTVQFLKIYEKARRWQNDHFDEAIEIYAKAKKIDKEVVVRALRNNPSL 285
>gi|288800977|ref|ZP_06406433.1| conserved hypothetical protein [Prevotella sp. oral taxon 299 str.
F0039]
gi|288331911|gb|EFC70393.1| conserved hypothetical protein [Prevotella sp. oral taxon 299 str.
F0039]
Length = 667
Score = 39.4 bits (90), Expect = 0.63, Method: Composition-based stats.
Identities = 28/201 (13%), Positives = 53/201 (26%), Gaps = 6/201 (2%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M KILA + L T I++ + A T+I + V+ L Y N K
Sbjct: 1 MKKILACSILLLTSLIAFCAPVGTWKNY-LAYHNTTEIEHVGEIYYVLASSSL-YSYNTK 58
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
++ ++ I W S K + Y L + +
Sbjct: 59 DGSIYTYDKTNGLSDTGIKAIQWNKSSRKLVIVYKNNNIDLLSENGKIENLPDYYLKAMT 118
Query: 121 FALGIKSYQD---IAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
I S + A G + + L+ + K
Sbjct: 119 EDKTIHSIYNNGVFAYLSTAFGILKINTKNAEFSDTYFLNESVEYAYIAKNQLYAAIPTR 178
Query: 178 ASFS-QIRRDQRNNIPAVFLS 197
+ + + ++ +
Sbjct: 179 GLMACSLASNPQDKSNWSVVG 199
>gi|306825868|ref|ZP_07459207.1| amino acid ABC superfamily ATP binding cassette transporter,
membrane protein [Streptococcus sp. oral taxon 071 str.
73H25AP]
gi|304432229|gb|EFM35206.1| amino acid ABC superfamily ATP binding cassette transporter,
membrane protein [Streptococcus sp. oral taxon 071 str.
73H25AP]
Length = 522
Score = 39.4 bits (90), Expect = 0.63, Method: Composition-based stats.
Identities = 32/290 (11%), Positives = 78/290 (26%), Gaps = 33/290 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFAD------TGWTDIAATTAMTSVILEEIL- 53
M K+ L ++ A + +R WT + +
Sbjct: 1 MKKLCLSILASLALTLGLASQVQADEYLRIGMEAAYAPFNWTQDDDSNGAVKIDGTNQYA 60
Query: 54 -GYKTNI------KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAEN 106
GY I L P+ ++ + + ++P E + +
Sbjct: 61 NGYDVQIAKKIAKDLGKEPLVVKTKWEGLVPALTSGKIDMIIAGMSPTAERKQEIAFSSS 120
Query: 107 LQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSL 166
++ +L V KS E + +
Sbjct: 121 YYTSEPVLLVKKDSAYANAKSL-----------------EDFSGAKITSQQGVYLYDLIS 163
Query: 167 KGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV 226
+ + + + + F+Q+R+ + ++S P + ++ + GF
Sbjct: 164 QIPGVKKETAMGDFAQMRQALEAGVIDAYVSERPEALTAEAANSKFKMVQVEPGFKTGEE 223
Query: 227 YTVVRSDYLDKCPNISRLLKNI-KFSVALENEMMKLILNNKQDRQFVGRT 275
T + IS++ +I S + +M ++ + +
Sbjct: 224 DTAIAIGLRKDDSRISQINASIETISKDEQVALMDRMIQEQ-PAEATATE 272
>gi|94500068|ref|ZP_01306603.1| probable 3-hydroxyacyl-CoA dehydrogenase [Oceanobacter sp. RED65]
gi|94427926|gb|EAT12901.1| probable 3-hydroxyacyl-CoA dehydrogenase [Oceanobacter sp. RED65]
Length = 715
Score = 39.4 bits (90), Expect = 0.67, Method: Composition-based stats.
Identities = 7/53 (13%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 256 NEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW-LIGVTTFDGQDPSRQLERFM 307
++ I N+ D + ++ +P + W + G G + + +
Sbjct: 182 AGLIHEIAENQDDLMVKAKAWIKANPKSTQPWDVKGYKLPGGAPSHPAVAQKL 234
>gi|331685388|ref|ZP_08385974.1| lipoprotein 28 [Escherichia coli H299]
gi|331077759|gb|EGI48971.1| lipoprotein 28 [Escherichia coli H299]
Length = 272
Score = 39.4 bits (90), Expect = 0.67, Method: Composition-based stats.
Identities = 20/238 (8%), Positives = 56/238 (23%), Gaps = 19/238 (7%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
+ + ++ + + + +E G + + + N
Sbjct: 26 QSSSDEKHIKVGVINGAEQDV-AEVAKKVAKEKYGLDVELVGFSGSLLPNDATN---HGE 81
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
+ F+ + KLVA G++ IK+ I +
Sbjct: 82 LDANVFQHRPFLEQDNQAHGYKLVAV-----GNTFVFPMAGYSKKIKTVAQIKEGATVAI 136
Query: 140 AKIYGIEPGNEGNQRILDMI---NNNKFSLKGFRLIEASELASFSQIRRD-----QRNNI 191
+ +I + + ++ +
Sbjct: 137 PNDPTNLGRALLLLQKEKLITLKEGKGLLPTALDITDNPRHLQIMELEGAQLPRVLDDPK 196
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
V + + + L+ + E V +V + N+ L++ +
Sbjct: 197 VDVAIISTTYIQQTGLSPVHDSVFIEDKNSP--YVNILVAREDNKNAENVKEFLQSYQ 252
>gi|260430179|ref|ZP_05784154.1| hypothetical protein CSE45_4610 [Citreicella sp. SE45]
gi|260419102|gb|EEX12357.1| hypothetical protein CSE45_4610 [Citreicella sp. SE45]
Length = 41
Score = 39.4 bits (90), Expect = 0.68, Method: Composition-based stats.
Identities = 5/28 (17%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 266 KQDRQFVGRTMLRTHPDLLKN-WLIGVT 292
+ + V + H + ++ WL G+
Sbjct: 14 GRSVEDVAEEWIEAHEETIEQVWLAGIE 41
>gi|117617549|ref|YP_857440.1| taurine ABC transporter, periplasmic binding protein [Aeromonas
hydrophila subsp. hydrophila ATCC 7966]
gi|117558956|gb|ABK35904.1| taurine ABC transporter, periplasmic binding protein [Aeromonas
hydrophila subsp. hydrophila ATCC 7966]
Length = 324
Score = 39.4 bits (90), Expect = 0.68, Method: Composition-based stats.
Identities = 9/65 (13%), Positives = 19/65 (29%), Gaps = 1/65 (1%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I + W P L ++ +G ++ VVR ++ P
Sbjct: 160 AIIAAWQRGDIDGAYVWAPALNELTKGGKVLTDSAQVGEWGAPTLDVWVVRKEFAKAHPE 219
Query: 241 ISRLL 245
+ +
Sbjct: 220 LVQAF 224
>gi|262067153|ref|ZP_06026765.1| NMT1/THI5 like protein [Fusobacterium periodonticum ATCC 33693]
gi|291379111|gb|EFE86629.1| NMT1/THI5 like protein [Fusobacterium periodonticum ATCC 33693]
Length = 346
Score = 39.4 bits (90), Expect = 0.69, Method: Composition-based stats.
Identities = 33/296 (11%), Positives = 77/296 (26%), Gaps = 46/296 (15%)
Query: 3 KILAVCLFLTTFSISYARDADSC------------TPVRFADTGWTDIAATTAMTSVILE 50
KIL + L + + D V G ++ +V
Sbjct: 9 KILIGLIALIVLAFGPFKANDKKSNTNTNTAEVNLKKVIIGLPGISNQTLEATGIAV--- 65
Query: 51 EILGYKTN-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQG 109
GY +K + F + G + + + I ++ N
Sbjct: 66 -NKGYMVEELKKVGYEPEFIYFQQAGPAVN-EALATNKIDV--AMYGDFPITILKSNGGD 121
Query: 110 AKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
K N + D K K+L K G + +++
Sbjct: 122 VKVFAVDNSRFMYGVLVQNDDNIKSIKDLEGKKVLYRKGTVEQKFFKEILKKYNLDE--D 179
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV 229
+ + + + Q + + + S + + G S+ V
Sbjct: 180 KFVSVNAGGADGQSIFSAKEAEAIFTFYYTALYMESKGLGKVIDSTLDKPEVGTQSLA-V 238
Query: 230 VRSDYLDKCPNIS-RLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLL 284
R+ +L++ P+ + ++K + + + +P+ +
Sbjct: 239 GRTKFLEENPDAAVAIIKAL----------------------ERAKDFAKENPEEV 272
>gi|328542601|ref|YP_004302710.1| Zinc/manganese/iron ABC transporter periplasmic
zinc/manganese/iron-binding protein [polymorphum gilvum
SL003B-26A1]
gi|326412347|gb|ADZ69410.1| Zinc/manganese/iron ABC transporter, periplasmic
zinc/manganese/iron-binding protein [Polymorphum gilvum
SL003B-26A1]
Length = 331
Score = 39.4 bits (90), Expect = 0.73, Method: Composition-based stats.
Identities = 20/173 (11%), Positives = 41/173 (23%), Gaps = 6/173 (3%)
Query: 112 YMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEG-NQRILDMINNNKFSLKGFR 170
L V + + Q + G++P + + + L
Sbjct: 37 EPLKVVATTAMIADAARQVGGDLVEVRALMGPGVDPHAFRQTRTDIVAMTKADLVLWHGL 96
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE--ASVYT 228
+EA + ++ + AV + + + A V T
Sbjct: 97 YLEAQMEGFLQGL--AEKRPVVAVAGALPKDHRLITHEDYADKFDPHVWMDPALWAEVVT 154
Query: 229 VVRSDYLDKCPNISRLLK-NIKFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
VR P + N + + + R +L H
Sbjct: 155 AVRDALATARPEAAEFFTANAQAHLKDIAALDAYSRQVLASVPEGARVLLTAH 207
>gi|222081385|ref|YP_002540748.1| sulfate ester transport system substrate [Agrobacterium radiobacter
K84]
gi|221726064|gb|ACM29153.1| sulfate ester transport system substrate [Agrobacterium radiobacter
K84]
Length = 358
Score = 39.4 bits (90), Expect = 0.73, Method: Composition-based stats.
Identities = 29/266 (10%), Positives = 74/266 (27%), Gaps = 30/266 (11%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADT-------GWTDIA-ATTAMTSVILEEILGYK 56
LA + L + + A+ + +++ A TA LE+
Sbjct: 9 LAAGVALALGMFAASAQAEEPLVIHIGYAAIGVDNRPYSEGTSAATARAGEYLEK----- 63
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ + + F Y + + KY+LA
Sbjct: 64 -EFANDPNVKIEWTFFKGAGPAVNEGFANNQLDF--AYQGDLPALIGRATGLKTKYLLAS 120
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ K ++L + ++ G G+ + ++ + + ++I
Sbjct: 121 GARKPLYLAVAKDSGIKKIEDLKGRKIALQRGTNGHLAAIKILEAHGLKERDLQVINLDS 180
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDL---NIHYLPGGEEISGFGEASVYTVVRSD 233
+ + + + ++ Y G++ + V R
Sbjct: 181 AGTVAALVS----KDIDAAFGDTQLINLAAKGSADVIYTTKGDDPHF--GRNAGIVAREA 234
Query: 234 YLDKCPNISR-----LLKNIKFSVAL 254
++D P I++ +K ++S
Sbjct: 235 FIDAHPEITQRVVDAFVKAAQWSSEE 260
>gi|209558800|ref|YP_002285272.1| Putative glutamine-binding periplasmic protein [Streptococcus
pyogenes NZ131]
gi|209540001|gb|ACI60577.1| Putative glutamine-binding periplasmic protein [Streptococcus
pyogenes NZ131]
Length = 498
Score = 39.4 bits (90), Expect = 0.74, Method: Composition-based stats.
Identities = 28/289 (9%), Positives = 68/289 (23%), Gaps = 24/289 (8%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFAD------TGWTDIAATTAMTSVILEE--- 51
M K++ CL A + +R WT A+ +V +E
Sbjct: 1 MKKLILSCLVALALLFGGMSRAQANQYLRVGMEAAYAPFNWTQDDASNG--AVPIEGTSQ 58
Query: 52 -ILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGA 110
GY + + L + G I S N
Sbjct: 59 YANGYDVQVAKKVAKAMNKELLV-VKTSWTGLIPALTSGKIDMIAAGMSPTKERRNEISF 117
Query: 111 KYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
+ + A K+ + G + +
Sbjct: 118 SNSYYTSQPVLVVTANGKYADATSLKDFSGAKVTAQQGVWHVNLLTQLKGAK--LQTPMG 175
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
A S + + P + + + + + + V
Sbjct: 176 DFSQMRQALTSGVIDAYISERPEAMTAEAADSRLKMITLK-----KGFAVAESYAAIAVG 230
Query: 231 RSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNK--QDRQFVGRTML 277
D+ ++++L+ + + +M ++ + + + + +
Sbjct: 231 MKKNDDRMATVNQVLEGFSQTDRM--ALMDDMVTKQPVEKKAEHAKAYI 277
>gi|323699654|ref|ZP_08111566.1| phosphonate ABC transporter, periplasmic phosphonate binding
protein [Desulfovibrio sp. ND132]
gi|323459586|gb|EGB15451.1| phosphonate ABC transporter, periplasmic phosphonate binding
protein [Desulfovibrio desulfuricans ND132]
Length = 294
Score = 39.4 bits (90), Expect = 0.75, Method: Composition-based stats.
Identities = 38/269 (14%), Positives = 75/269 (27%), Gaps = 38/269 (14%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTA-----MTSVILEEILGYKTN 58
+ A+ L + ++ A ++ T ++ T+ AA +A + + LE+ LG K
Sbjct: 11 MAALVLTVALPGLANAGPSEWPTTLKLGFIP-TEGAADSAKRAKPIAAQ-LEKDLGVKVE 68
Query: 59 I-KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
I ++ NK ID+ Y S + E + + ++ Q + +
Sbjct: 69 IFTASDYNGILTAMANKHIDLAY-YGPKSYVEATEKANAEAIVMELNKDGQPGYTGIIIT 127
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE- 176
I K G +P + + ++I + +
Sbjct: 128 RK--------DSGITDMDKAKGKTFAFTDPNSTSGYLVPNVIFARDMKIDPEKYFAEVRF 179
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI----SGFGEASVYTVVRS 232
S +N V + I A + VR
Sbjct: 180 SGSHGASILAVKNGSIQVAATNNIDMDRMIEKGAASLDDFNIIKRSDMIPGAPI--AVRK 237
Query: 233 DYLD--------------KCPNISRLLKN 247
D + P +L+N
Sbjct: 238 DLPESLKCAIAGSLLKINDDPEALEILQN 266
>gi|294500074|ref|YP_003563774.1| putative taurine ABC transporter taurine-binding protein [Bacillus
megaterium QM B1551]
gi|294350011|gb|ADE70340.1| putative taurine ABC transporter, taurine-binding protein [Bacillus
megaterium QM B1551]
Length = 333
Score = 39.4 bits (90), Expect = 0.75, Method: Composition-based stats.
Identities = 37/285 (12%), Positives = 77/285 (27%), Gaps = 37/285 (12%)
Query: 1 MYK-ILAVCLFLTTFSISYAR-----DADSCTPVRFADTGWTDIAATTAMTSVILEEILG 54
M K IL + L + + D +R + LE+
Sbjct: 1 MKKGILGLLLCFILVVSGCSSTTSGSENDVPKEIRLGYQASPNGELLAK-ARGSLEKKYP 59
Query: 55 YKTNIK---LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAK 111
+T IK + ++ ID + P + ++ G
Sbjct: 60 -ETQIKWIKFESGRDINNAIAGGSIDFGLVGTPPGAIGVANKLPYK---VYYLHDIIGES 115
Query: 112 YMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
L V + ++L K + + +L + N LK +
Sbjct: 116 EALVVKKGADIKSL----------EDLKGKKIATTFSSTAHYSLLSALKNKNIDLKKENI 165
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDL-NIHYLPGGEEISGFGEASVYT-V 229
+ I W+P N + + L +E++ G + +
Sbjct: 166 TLLDMQSPD--ILAAWNRGDIDGAYVWQPLQTNLIHADGNVLISSKEVAKQGSITGEFGI 223
Query: 230 VRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGR 274
V D+ K PNI + + + + + ++ +
Sbjct: 224 VHEDFAKKYPNIVK---------GYISILNESVNYYHKNPEKSAE 259
>gi|227328111|ref|ZP_03832135.1| putative phosphotransferase [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 616
Score = 39.4 bits (90), Expect = 0.75, Method: Composition-based stats.
Identities = 9/71 (12%), Positives = 23/71 (32%), Gaps = 15/71 (21%)
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENE---------------MMKL 261
+ ++T R ++ ++CP +LL +I + + + L
Sbjct: 22 KHFHAAGWRIFTASRQNWAEECPWAEKLLNHIHLDLEDIDSLQQALPLIKEKLGGRLDAL 81
Query: 262 ILNNKQDRQFV 272
+ N +
Sbjct: 82 VDNAGISPKGA 92
>gi|227355513|ref|ZP_03839908.1| TTT family tricarboxylate transporter, receptor protein [Proteus
mirabilis ATCC 29906]
gi|227164309|gb|EEI49198.1| TTT family tricarboxylate transporter, receptor protein [Proteus
mirabilis ATCC 29906]
Length = 314
Score = 39.4 bits (90), Expect = 0.75, Method: Composition-based stats.
Identities = 26/204 (12%), Positives = 53/204 (25%), Gaps = 12/204 (5%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDI---AATTAMTSVILEEILGYKT 57
M K L ++ A P+ W + + L+E LG
Sbjct: 1 MKKTLLALTLCSSVFTVPAFAQWPEKPITI-IVPWAAGGNTDTVARLAAKGLQEELGVTV 59
Query: 58 NIKL---LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
N+ + V ++KN D + + + +
Sbjct: 60 NVVNKTGGSGVVGHDAIKNAKPDGYTLGIATVEIAMMHHQGMTNLTYQDYTPITRLAVIY 119
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPG--NEGNQRILDMINNNKFSLKGFRLI 172
V + + Q+I Y K K+ G + + + M+ R I
Sbjct: 120 GGLQVAKSSPFNNAQEIIDYAKANPGKLKASGSGLNSIWHLNNIGMLRAAGLPDNAIRFI 179
Query: 173 EASELASFSQIRRDQRNNIPAVFL 196
+ S ++ + +
Sbjct: 180 PSQGA---SAALQELASGGVDIVT 200
>gi|227111923|ref|ZP_03825579.1| short-chain dehydrogenase [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 244
Score = 39.4 bits (90), Expect = 0.75, Method: Composition-based stats.
Identities = 9/71 (12%), Positives = 23/71 (32%), Gaps = 15/71 (21%)
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENE---------------MMKL 261
+ ++T R ++ ++CP +LL +I + + + L
Sbjct: 22 KHFHAAGWRIFTASRQNWAEECPWAEKLLNHIHLDLEDIDSLQQTLPLIKEKLGGRLDAL 81
Query: 262 ILNNKQDRQFV 272
+ N +
Sbjct: 82 VDNAGISPKGA 92
>gi|50120986|ref|YP_050153.1| short-chain dehydrogenase [Pectobacterium atrosepticum SCRI1043]
gi|49611512|emb|CAG74960.1| probable short-chain dehydrogenase [Pectobacterium atrosepticum
SCRI1043]
Length = 244
Score = 39.4 bits (90), Expect = 0.75, Method: Composition-based stats.
Identities = 9/71 (12%), Positives = 23/71 (32%), Gaps = 15/71 (21%)
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENE---------------MMKL 261
+ ++T R ++ ++CP +LL +I + + + L
Sbjct: 22 KHFHAAGWRIFTASRQNWAEECPWAEKLLNHIHLDLEDIDSLQQTLPLIKEKLGGRLDAL 81
Query: 262 ILNNKQDRQFV 272
+ N +
Sbjct: 82 VDNAGISPKGA 92
>gi|162419924|ref|YP_001608014.1| taurine transporter substrate-binding subunit [Yersinia pestis
Angola]
gi|162352739|gb|ABX86687.1| taurine ABC transporter, periplasmic binding protein [Yersinia
pestis Angola]
Length = 327
Score = 39.0 bits (89), Expect = 0.77, Method: Composition-based stats.
Identities = 9/62 (14%), Positives = 17/62 (27%), Gaps = 1/62 (1%)
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISR 243
+ W P L ++ +G ++ VVR D+ P +
Sbjct: 162 AAWQRGDIDGAYVWAPAVSELAKTGTVLTDSAQVGQWGAPTLDVWVVRKDFAKAHPEVVT 221
Query: 244 LL 245
Sbjct: 222 AF 223
>gi|227819734|ref|YP_002823705.1| D-ribose-binding periplasmic protein precursor [Sinorhizobium
fredii NGR234]
gi|227338733|gb|ACP22952.1| D-ribose-binding periplasmic protein precursor [Sinorhizobium
fredii NGR234]
Length = 317
Score = 39.0 bits (89), Expect = 0.78, Method: Composition-based stats.
Identities = 15/109 (13%), Positives = 27/109 (24%), Gaps = 10/109 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFA------DTGWTDIAATTA--MTSVILEEI 52
M L +++ A V D GWT A + +++E
Sbjct: 1 MRSKLFGLTLAAMTALAGVSHAQEEKKVTIGVSIPAADHGWTAGVVFHAERVAKILMERN 60
Query: 53 LGYK--TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS 99
G + DI P+ + ++E
Sbjct: 61 PGLNVIVKTSPDPASQANAVQDLETQDIDALVILPTDPDPLVNAIKEVK 109
>gi|255655495|ref|ZP_05400904.1| putative aliphatic sulfonates ABC transporter,substrate-binding
lipoprotein [Clostridium difficile QCD-23m63]
Length = 302
Score = 39.0 bits (89), Expect = 0.79, Method: Composition-based stats.
Identities = 23/170 (13%), Positives = 50/170 (29%), Gaps = 12/170 (7%)
Query: 106 NLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFS 165
N G K + + + + K K+L K G +Q ++ + ++
Sbjct: 88 NGVGLKITNIYSRSPKGYMLITNNENIKSIKDLKGKKIVGPKGTILHQLLIAALAKEGYT 147
Query: 166 LKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEAS 225
+ + + V + P + + + + E G
Sbjct: 148 IDDVEYVNMD----IPSAASALESKSADVAMLAGPVALKTINSGAKMIVNGEGLVSGI-- 201
Query: 226 VYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRT 275
+ T V D+ +K P + + + E +K + NK V
Sbjct: 202 IVTAVSDDFAEKYPELVKRFMKVH------EETLKYMNENKDKVMDVVSK 245
>gi|171777495|ref|ZP_02919217.1| hypothetical protein STRINF_00044 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171283205|gb|EDT48629.1| hypothetical protein STRINF_00044 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 523
Score = 39.0 bits (89), Expect = 0.79, Method: Composition-based stats.
Identities = 40/285 (14%), Positives = 82/285 (28%), Gaps = 26/285 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFAD------TGWT-DIAATTAM-TSVILEEI 52
M K+L C A++ +R WT D + A+ +
Sbjct: 1 MKKLLLSCFAALLLLFGGMTSANADEYLRVGMEAAYAPFNWTQDDDSNGAVPIEGTSQYA 60
Query: 53 LGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKY 112
GY I + + + L + + ++ + K
Sbjct: 61 NGYDVQIAKKIADSL------GKELLVVKTTWTGLIPALTSGKIDMIAAGMSPTAERKKE 114
Query: 113 MLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ SY I KK A+ ++ + +
Sbjct: 115 I-----AFSDSYYTSYPVIVVSKKGDFAQATSLKDFAGAKLTSQQGVYLYNLIDQIKGAS 169
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPI-----NSDLNIHYLPGGEE-ISGFGEASV 226
+ + + F+Q+R+ + I ++S P I NSD + G+ + + ++
Sbjct: 170 KETAMGDFNQMRQALESGIIDGYVSERPDAISAENANSDFKMIAFEDGKGFATSKADTAI 229
Query: 227 YTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQF 271
+R D D ++ +L I M +I D+
Sbjct: 230 AVGLRKDDTDTLAKVNAVLAGIS-DNDRLQLMDDMIEKQPADKSE 273
>gi|300903069|ref|ZP_07121009.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 84-1]
gi|301307279|ref|ZP_07213295.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 124-1]
gi|300404900|gb|EFJ88438.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 84-1]
gi|300837537|gb|EFK65297.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 124-1]
gi|315254655|gb|EFU34623.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 85-1]
gi|323182451|gb|EFZ67855.1| D-methionine-binding lipoprotein metQ [Escherichia coli 1357]
Length = 272
Score = 39.0 bits (89), Expect = 0.81, Method: Composition-based stats.
Identities = 19/238 (7%), Positives = 55/238 (23%), Gaps = 19/238 (7%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
+ + ++ + + + +E G + + + N
Sbjct: 26 QSSSDAKHIKVGVINGAEQDV-AEVAKKVAKEKYGLDVELVGFSGSLLPNDATN---HGE 81
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
+ F+ + KLVA G++ I + I +
Sbjct: 82 LDANVFQHRPFLEQDNQAHGYKLVAV-----GNTFVFPMAGYSKKITTVAQIKEGATVAI 136
Query: 140 AKIYGIEPGNEGNQRILDMI---NNNKFSLKGFRLIEASELASFSQIRRD-----QRNNI 191
+ +I + + ++ +
Sbjct: 137 PNDPTNLGRALLLLQKEKLITLKEGKGLLPTALDITDNPRHLQIMELEGAQLPRVLDDPK 196
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
V + + + L+ + E V +V + N+ L++ +
Sbjct: 197 VDVAIISTTYIQQTGLSPVHDSVFIEDKNSP--YVNILVAREDNKNAENVKEFLQSYQ 252
>gi|121610568|ref|YP_998375.1| extracellular solute-binding protein [Verminephrobacter eiseniae
EF01-2]
gi|121555208|gb|ABM59357.1| extracellular solute-binding protein, family 3 [Verminephrobacter
eiseniae EF01-2]
Length = 319
Score = 39.0 bits (89), Expect = 0.83, Method: Composition-based stats.
Identities = 35/256 (13%), Positives = 68/256 (26%), Gaps = 21/256 (8%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP-VRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
++ + A A + + +GWT A T L G IK
Sbjct: 3 RSVVKWLVLAAACVPGLAAQAQAQNTKLVLGMSGWTGFAPLTLADKAGLFSKHGLDVEIK 62
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
++A +L K I +++ + LAV
Sbjct: 63 MIAQKDRHLALAAKSIQ---CAATTVETHVAWNANGVPIVQIFQTDKSYGADGLAVRGDI 119
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ I G P M++ N +LK +L S
Sbjct: 120 KGFADLRGKTIGVDAP-------GTAPFFGLAW----MLSKNGMTLKDVKLTTLSP---- 164
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV-RSDYLDKCP 239
+ +++EP +++ + + + TV +L P
Sbjct: 165 QAAAQAFVTGQGDAAMTYEP-YLSTVRDNPAAGKILATTLDYPMVIDTVGCDPAWLKANP 223
Query: 240 NISRLLKNIKFSVALE 255
++ L + F+
Sbjct: 224 RAAQALADSYFAALDM 239
>gi|146294960|ref|YP_001185384.1| extracellular solute-binding protein [Shewanella putrefaciens
CN-32]
gi|145566650|gb|ABP77585.1| extracellular solute-binding protein, family 1 [Shewanella
putrefaciens CN-32]
Length = 274
Score = 39.0 bits (89), Expect = 0.83, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 38/96 (39%), Gaps = 9/96 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYKT 57
M +L + + + ++ A+ S ++ A T T+ + + +L E GYK
Sbjct: 8 MKSLLGLVVAASLLTVLPAQ---STEIIKLATTTSTEN---SGLLQDLLPKFESESGYKV 61
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP 93
+ + + +D+ M + + KF+A
Sbjct: 62 QVIATGTGKALKLGEQGDVDLVMTHAPSAEAKFVAD 97
>gi|300925476|ref|ZP_07141354.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 182-1]
gi|301325348|ref|ZP_07218853.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 78-1]
gi|300418404|gb|EFK01715.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 182-1]
gi|300847807|gb|EFK75567.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 78-1]
Length = 272
Score = 39.0 bits (89), Expect = 0.84, Method: Composition-based stats.
Identities = 20/238 (8%), Positives = 55/238 (23%), Gaps = 19/238 (7%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
+ ++ + + + +E G + + + N
Sbjct: 26 QSGSDTKHIKVGVINGAEQDV-AEVAKKVAKEKYGLDVELVGFSGSLLPNDATN---HGE 81
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
+ F+ + KLVA G++ IK+ I +
Sbjct: 82 LDANVFQHRPFLEQDNQAHGYKLVAV-----GNTFVFPMAGYSKKIKTVAQIKEGATVAI 136
Query: 140 AKIYGIEPGNEGNQRILDMI---NNNKFSLKGFRLIEASELASFSQIRRD-----QRNNI 191
+ +I + + ++ +
Sbjct: 137 PNDPTNLGRALLLLQKEKLITLKEGKGLLPTALDITDNPRHLQIMELEGAQLPRVLDDPK 196
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
V + + + L+ + E V +V + N+ L++ +
Sbjct: 197 VDVAIISTTYIQQTGLSPVHDSVFIEDKNSP--YVNILVAREDNKNAENVKEFLQSYQ 252
>gi|254168258|ref|ZP_04875104.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Aciduliprofundum boonei T469]
gi|197622767|gb|EDY35336.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Aciduliprofundum boonei T469]
Length = 264
Score = 39.0 bits (89), Expect = 0.85, Method: Composition-based stats.
Identities = 38/296 (12%), Positives = 80/296 (27%), Gaps = 49/296 (16%)
Query: 1 MYKILAVCLFLTTFSISYA------RDADSCTPVRF-ADTGWTDIAATTAMTSVILEEIL 53
M KI + + L F A + +S + A G + + E
Sbjct: 1 MKKIWVLVIVLVIFGAIGAGWILYSSNTNSEKTLSICAGAGL--MKPMNELV-QAFENKT 57
Query: 54 GYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
G K + F L+ G D+F+ Y E+ + + +N+ +
Sbjct: 58 GVKVEVHYGGSAEIFGILETTGCDVFIPGAYYYTEEGVKR---GYIVPSTVKNITYHIPV 114
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
+AV K+ ++ K+ + G G + ++ N
Sbjct: 115 IAVPK----GNPKNITSLSDLAKKGVRVVLGDPKGPAIGKVAKKILENAHL-WDNVSKNV 169
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWE--PHPINSDLNIHYLPGGEEISGFGEASVYTVVR 231
+ + +Q+ + WE + I + + ++ T V
Sbjct: 170 VTFAPTVNQLLIYLTTGQADAAIIWEDLTTWSQAKGKIQVIQIPPNENIIK--TIPTAVT 227
Query: 232 SDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNW 287
+ Y K I + + H ++ + W
Sbjct: 228 T-YAKKDG-------------------NYQIAVEFNN-------FVYEHKEIWEKW 256
>gi|120611632|ref|YP_971310.1| glycine betaine ABC transporter substrate-binding protein
[Acidovorax citrulli AAC00-1]
gi|120590096|gb|ABM33536.1| Substrate-binding region of ABC-type glycine betaine transport
system [Acidovorax citrulli AAC00-1]
Length = 321
Score = 39.0 bits (89), Expect = 0.86, Method: Composition-based stats.
Identities = 31/249 (12%), Positives = 67/249 (26%), Gaps = 19/249 (7%)
Query: 7 VCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPV 66
+ ++ A A + +GWT A T + G +K++
Sbjct: 12 LAAAAGMVGLAMAAQAQETK-IALGMSGWTGFAPLTLADKAGIFRKNGLDVELKMIPQKD 70
Query: 67 TFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIK 126
+L +K I +++ + +AV +K
Sbjct: 71 RHLALASKAIQ---CAATTVETHVAWNTNGVPIVQIFQMDKSYGADGIAVR-----NDVK 122
Query: 127 SYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRD 186
S+ D+ + A G P M++ N +LK + + +
Sbjct: 123 SFADLKGKTVAVSAP--GTAPYFGLAW----MLSKNGMTLKDVKTVSLEPQP----AAQA 172
Query: 187 QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLK 246
+ +++EP+ N + ++L P ++ L
Sbjct: 173 FVSGQNDAAMTYEPYLSTIRANPQAGRILATTIDYPMVMDTVGCAPEWLKANPKAAQALT 232
Query: 247 NIKFSVALE 255
F
Sbjct: 233 QSYFDALEM 241
>gi|300815098|ref|ZP_07095323.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 107-1]
gi|300531990|gb|EFK53052.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 107-1]
gi|324115988|gb|EGC09914.1| YaeC family lipoprotein [Escherichia coli E1167]
Length = 272
Score = 39.0 bits (89), Expect = 0.86, Method: Composition-based stats.
Identities = 21/238 (8%), Positives = 55/238 (23%), Gaps = 19/238 (7%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
+ ++ + + + +E G + + + N
Sbjct: 26 QSGSDTKHIKVGVINGAEQDV-AEVAKKVAKEKYGLDVELVGFSGSLLPNDATN---HGE 81
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
+ F+ + KLVA G++ IKS I +
Sbjct: 82 LDANVFQHRPFLEQDNQAHGYKLVAV-----GNTFVFPMAGYSKKIKSVAQIKEGATVAI 136
Query: 140 AKIYGIEPGNEGNQRILDMI---NNNKFSLKGFRLIEASELASFSQIRRD-----QRNNI 191
+ +I + + ++ +
Sbjct: 137 PNDPTNLGRALLLLQKEKLITLKEGKGLLPTALDITDNPRHLQIMELEGAQLPRVLDDPK 196
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
V + + + L+ + E V +V + N+ L++ +
Sbjct: 197 VDVAIISTTYIQQTGLSPVHDSVFIEDKNSP--YVNILVAREDNKNAENVKEFLQSYQ 252
>gi|301018991|ref|ZP_07183214.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 69-1]
gi|300399485|gb|EFJ83023.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 69-1]
Length = 272
Score = 39.0 bits (89), Expect = 0.86, Method: Composition-based stats.
Identities = 21/238 (8%), Positives = 55/238 (23%), Gaps = 19/238 (7%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
+ ++ + + + +E G + + + N
Sbjct: 26 QSNSDEKHIKVGVINGAEQDV-AEVAKKVAKEKYGLDVELVGFSGSLLPNDATN---HGE 81
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
+ F+ + KLVA G++ IK+ I +
Sbjct: 82 LDANVFQHRPFLEQDNQAHGYKLVAV-----GNTFVFPMAGYSKKIKTVAQIKEGATVAI 136
Query: 140 AKIYGIEPGNEGNQRILDMI---NNNKFSLKGFRLIEASELASFSQIRRD-----QRNNI 191
+ +I + E ++ +
Sbjct: 137 PNDPTNLGRALLLLQKEKLITLKEGKGLLPTALDITENPRHLQIMELEGAQLPRVLDDPK 196
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
V + + + L+ + E V +V + N+ L++ +
Sbjct: 197 VDVAIISTTYIQQTGLSPVHDSVFIEDKNSP--YVNILVAREDNKNAENVKEFLQSYQ 252
>gi|332288731|ref|YP_004419583.1| DL-methionine transporter substrate-binding subunit [Gallibacterium
anatis UMN179]
gi|330431627|gb|AEC16686.1| DL-methionine transporter substrate-binding subunit [Gallibacterium
anatis UMN179]
Length = 266
Score = 39.0 bits (89), Expect = 0.88, Method: Composition-based stats.
Identities = 13/134 (9%), Positives = 36/134 (26%), Gaps = 11/134 (8%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+ IL + + S + A ++ +++ I ++ G + +
Sbjct: 3 LKNILTISALSVAIAFSSSAFAKDGK-IKVGIQVGPEMSV-AETAKQIAKDKYGLEVELV 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAE-NLQGAKYMLAVNDV 119
VT + + F + +K +L
Sbjct: 61 PFTDYVT--------PNAALENKLIDANAFQHKPYLDSQMKDRGWTDLVIVGNTFVYPIA 112
Query: 120 GFALGIKSYQDIAK 133
++ IK +++
Sbjct: 113 AYSKKIKDVKELKD 126
>gi|218707294|ref|YP_002414813.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli UMN026]
gi|218434391|emb|CAR15319.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli UMN026]
gi|284923734|emb|CBG36831.1| lipoprotein-28 [Escherichia coli 042]
Length = 272
Score = 39.0 bits (89), Expect = 0.88, Method: Composition-based stats.
Identities = 21/238 (8%), Positives = 55/238 (23%), Gaps = 19/238 (7%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
+ ++ + + + +E G + + + N
Sbjct: 26 QSNSDEKHIKVGVINGAEQDV-AEVAKKVAKEKYGLDVELVGFSGSLLPNDATN---HGE 81
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
+ F+ + KLVA G++ IK+ I +
Sbjct: 82 LDANVFQHRPFLEQDNQAHGYKLVAV-----GNTFVFPMAGYSKKIKTVAQIKEGATVAI 136
Query: 140 AKIYGIEPGNEGNQRILDMI---NNNKFSLKGFRLIEASELASFSQIRRD-----QRNNI 191
+ +I + E ++ +
Sbjct: 137 PNDPTNLGRALLLLQKEKLITLKEGKGLLPTALDITENPRHLQIMELEGAQLPRVLDDPK 196
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
V + + + L+ + E V +V + N+ L++ +
Sbjct: 197 VDVAIISTTYIQQTGLSPVHDSVFIEDKNSP--YVNILVAREDNKNAENVKEFLQSYQ 252
>gi|83310959|ref|YP_421223.1| ABC-type nitrate/sulfonate/bicarbonate transport systems
[Magnetospirillum magneticum AMB-1]
gi|82945800|dbj|BAE50664.1| ABC-type nitrate/sulfonate/bicarbonate transport systems
[Magnetospirillum magneticum AMB-1]
Length = 469
Score = 39.0 bits (89), Expect = 0.88, Method: Composition-based stats.
Identities = 33/290 (11%), Positives = 72/290 (24%), Gaps = 42/290 (14%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL----------- 53
L L ++ A + + T +VI E L
Sbjct: 3 LRTALLTGAAILALTAPAQAGQTLTIGIGTQDTTTNTVTAGAVIRELKLLDKYLPKTGKY 62
Query: 54 -GYKTNI---KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFI----APYLEEGSIKLVAE 105
+ + P + + YP + P + I + A
Sbjct: 63 ADITVKLDWQNFTSGPPVTNGMMAGKLQFGAMGDYPLVVNGYTFQSNPDAKSQLISVAAY 122
Query: 106 NLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFS 165
N+ G+ L V+ + + K+ + G+ + +L + + +
Sbjct: 123 NINGSGNGLVVHKDSPYYELSDLKG----------KVVSVPFGSAAHGMLLKTMQDKGWG 172
Query: 166 LKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEAS 225
++L+ S + + + + P + +
Sbjct: 173 ADYWKLVSQSPEVGATNL----QEKKIDAHADFVPFAELLPFRGFARKIYDGVESGAATW 228
Query: 226 VYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRT 275
VVR+D+ +K P I + K D +
Sbjct: 229 HGVVVRTDFAEKYPEIVVAYLKAQIEAEQWI---------KADPKRAAEQ 269
>gi|302418298|ref|XP_003006980.1| spherulin-1A [Verticillium albo-atrum VaMs.102]
gi|261354582|gb|EEY17010.1| spherulin-1A [Verticillium albo-atrum VaMs.102]
Length = 261
Score = 39.0 bits (89), Expect = 0.89, Method: Composition-based stats.
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 270 QFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSR 301
+ V + +P+++ L GVTT DG+D +
Sbjct: 196 EQVAQAFFSLNPEVVSATLGGVTTLDGKDIAS 227
>gi|293407286|ref|ZP_06651210.1| metQ [Escherichia coli FVEC1412]
gi|298383032|ref|ZP_06992627.1| metQ [Escherichia coli FVEC1302]
gi|291426097|gb|EFE99131.1| metQ [Escherichia coli FVEC1412]
gi|298276868|gb|EFI18386.1| metQ [Escherichia coli FVEC1302]
Length = 270
Score = 39.0 bits (89), Expect = 0.91, Method: Composition-based stats.
Identities = 21/238 (8%), Positives = 55/238 (23%), Gaps = 19/238 (7%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
+ ++ + + + +E G + + + N
Sbjct: 24 QSNSDEKHIKVGVINGAEQDV-AEVAKKVAKEKYGLDVELVGFSGSLLPNDATN---HGE 79
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
+ F+ + KLVA G++ IK+ I +
Sbjct: 80 LDANVFQHRPFLEQDNQAHGYKLVAV-----GNTFVFPMAGYSKKIKTVAQIKEGATVAI 134
Query: 140 AKIYGIEPGNEGNQRILDMI---NNNKFSLKGFRLIEASELASFSQIRRD-----QRNNI 191
+ +I + E ++ +
Sbjct: 135 PNDPTNLGRALLLLQKEKLITLKEGKGLLPTALDITENPRHLQIMELEGAQLPRVLDDPK 194
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
V + + + L+ + E V +V + N+ L++ +
Sbjct: 195 VDVAIISTTYIQQTGLSPVHDSVFIEDKNSP--YVNILVAREDNKNAENVKEFLQSYQ 250
>gi|220936238|ref|YP_002515137.1| NMT1/THI5 like domain protein [Thioalkalivibrio sp. HL-EbGR7]
gi|219997548|gb|ACL74150.1| NMT1/THI5 like domain protein [Thioalkalivibrio sp. HL-EbGR7]
Length = 326
Score = 39.0 bits (89), Expect = 0.93, Method: Composition-based stats.
Identities = 25/206 (12%), Positives = 61/206 (29%), Gaps = 32/206 (15%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL----GYK 56
+ ++ + +T +S ++ P++ + W A V +E+ G
Sbjct: 5 LKRLFGALVGITMLGMSAQALSE---PLKIGYSDWPGWVA----WEVAIEKDWFKEEGVD 57
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKY-MLA 115
+ + + +D + + GA+ M+
Sbjct: 58 VKFEWFDYVASMDAFAAGQLDAVAMTNGDA----------------LVTGATGARNVMII 101
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
+ND + + +L + G+E G + +L+ + N S LI
Sbjct: 102 INDYSNGNDMIIARRGISSVADLKGRKIGVEIGFVSHLLLLNALEKNGMSESDVELINVP 161
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPH 201
+ + ++W+P
Sbjct: 162 TNETPQVLAS----GNVDAIVAWQPS 183
>gi|169335559|ref|ZP_02862752.1| hypothetical protein ANASTE_01974 [Anaerofustis stercorihominis DSM
17244]
gi|169258297|gb|EDS72263.1| hypothetical protein ANASTE_01974 [Anaerofustis stercorihominis DSM
17244]
Length = 290
Score = 39.0 bits (89), Expect = 0.94, Method: Composition-based stats.
Identities = 22/188 (11%), Positives = 51/188 (27%), Gaps = 10/188 (5%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
+LAVCL A + A G T + + + +++
Sbjct: 30 LLAVCLAALCLIGFAGCGASGSGTITMA--GSTSMESVAKAWGEAYQLNNDVTIDVQGGG 87
Query: 64 VPVTFRSLKNKGIDIFM---GYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
S+K++ + M ++ + Y + N L +
Sbjct: 88 SSAGVTSVKDESAQVGMLSRELKDEEKQEGLTEYQVAIDGIAIVVNKDNKVEELTSKQIA 147
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMIN-----NNKFSLKGFRLIEAS 175
K + + G E G+ +++ K L ++++
Sbjct: 148 DIYTGKITNWKDVGGADEEIVVVGREAGSGTRDGFESILDVEEKCKYKAELNETGQVKST 207
Query: 176 ELASFSQI 183
++ I
Sbjct: 208 VASTKGAI 215
>gi|310780170|ref|YP_003968502.1| NMT1/THI5 like domain protein [Ilyobacter polytropus DSM 2926]
gi|309749493|gb|ADO84154.1| NMT1/THI5 like domain protein [Ilyobacter polytropus DSM 2926]
Length = 322
Score = 39.0 bits (89), Expect = 0.95, Method: Composition-based stats.
Identities = 40/287 (13%), Positives = 81/287 (28%), Gaps = 48/287 (16%)
Query: 1 MY-KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL--GYKT 57
M K + I +A P+R A W + + E+
Sbjct: 1 MKIKNILFPFIFGFTIILFASCFKEKKPIRIAANNWPS----CELWYIAEEQGYFEDVPV 56
Query: 58 NIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
I + SL D+ ++ ++ + A E+ I L+ E + G L V
Sbjct: 57 EIVRFTKWSDSMASLYLGKTDLVHSTYFNAV--YHAGKGEKSKIILMTETIFGN-QGLVV 113
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
N + +L K +E + + + + N S L+ S
Sbjct: 114 NKEI------------QSASDLKGKKIAVEIDRDEHYLLYKFLRKNNMSENDIELVSVSS 161
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
S++ + +++EP+ + ++ + V + R LD
Sbjct: 162 FEEASKL---FIDGKVDAAVTYEPYVSTAVDKVNGNLLMQSNRKLMSTDV-ILAREKSLD 217
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDL 283
K P L + ++ +P+
Sbjct: 218 KRPEDYSKLVK------------AWYK---------AQEFVKNNPEK 243
>gi|193075944|gb|ABO10524.2| ABC-type nitrate/sulfonate/bicarbonate transport system
[Acinetobacter baumannii ATCC 17978]
Length = 327
Score = 39.0 bits (89), Expect = 0.95, Method: Composition-based stats.
Identities = 28/275 (10%), Positives = 76/275 (27%), Gaps = 31/275 (11%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSV--ILEEIL-GYKTN 58
+ AV + T + + +R + + A+ + E+ K
Sbjct: 17 KRFSAVAVLGLTIAAPAWAIDPTVKELRIG---FQKSSINFAIAKQQKLFEQEFPNAKIT 73
Query: 59 IKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
P +L +D+ + P A + + E + + V
Sbjct: 74 WNEFPAGPQILEALAVGSLDVGVTGDTP---PVYAQAAGKPLYYIAYEAAKPLASAILVP 130
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
K K+L K ++ G+ + ++ + I +
Sbjct: 131 K----------NSQLKQLKDLKGKRIALQKGSSSHYLLVQAVRKAGLKWSDITPIWLTP- 179
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDK 237
+ R + + W+P+ ++ L + + + +++ +
Sbjct: 180 ---ADARAAFQKGAVDAWAIWDPYYASAQLEDQARVLASGKGLSPNYT-FYLAAPNFVKQ 235
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
P L + N+ K + +++ +
Sbjct: 236 YPKAVPGL------IKQINQADKWVQSHQAETASA 264
>gi|254361825|ref|ZP_04977960.1| ABC superfamily ATP binding cassette transporter, binding protein
[Mannheimia haemolytica PHL213]
gi|261491613|ref|ZP_05988196.1| lipoprotein 1 [Mannheimia haemolytica serotype A2 str. BOVINE]
gi|261494972|ref|ZP_05991441.1| lipoprotein 1 [Mannheimia haemolytica serotype A2 str. OVINE]
gi|1170786|sp|Q08868|PLPA_PASHA RecName: Full=Outer membrane lipoprotein 1; AltName: Full=PLP1;
Flags: Precursor
gi|150508|gb|AAA25541.1| lipoprotein [Mannheimia haemolytica]
gi|349530|gb|AAA25538.1| lipoprotein [Mannheimia haemolytica]
gi|153093360|gb|EDN74356.1| ABC superfamily ATP binding cassette transporter, binding protein
[Mannheimia haemolytica PHL213]
gi|261309381|gb|EEY10615.1| lipoprotein 1 [Mannheimia haemolytica serotype A2 str. OVINE]
gi|261312739|gb|EEY13859.1| lipoprotein 1 [Mannheimia haemolytica serotype A2 str. BOVINE]
Length = 277
Score = 39.0 bits (89), Expect = 0.95, Method: Composition-based stats.
Identities = 26/262 (9%), Positives = 62/262 (23%), Gaps = 22/262 (8%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP----------VRFADTGWTDIAATTAMTSVILEE 51
KIL V L + + + + ++ + + I +E
Sbjct: 4 KKILGVALVSALALTACKEEKKAESTAAPAAQAPAKIKVGVMSGPEHTV-AERAAQIAKE 62
Query: 52 ILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAK 111
G + L + +K + PYL++ S NL
Sbjct: 63 KYGLEVEFVLFNDYALPNTAVSK-------GDLDANAFQHKPYLDKDSQSKGLNNLVIVG 115
Query: 112 YMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK---FSLKG 168
G++ +K+ ++A+ +I
Sbjct: 116 NTFVYPLAGYSKKVKNVSELAEGAVIAVPNDPSNLARALILLEKQGLIKLKDNTNLFSTS 175
Query: 169 FRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEA-SVY 227
+IE + ++ + + ++ V
Sbjct: 176 VDIIENPKNLKIKEVDTSIAAKALDDVDLAVVNNTYAGQVGLNTQDHGVFVESKDSPYVN 235
Query: 228 TVVRSDYLDKCPNISRLLKNIK 249
+V N+ +K+ +
Sbjct: 236 IIVARQDNKDAANVQNFIKSYQ 257
>gi|15596081|ref|NP_249575.1| C4-dicarboxylate-binding periplasmic protein [Pseudomonas
aeruginosa PAO1]
gi|107100342|ref|ZP_01364260.1| hypothetical protein PaerPA_01001367 [Pseudomonas aeruginosa PACS2]
gi|254239237|ref|ZP_04932560.1| hypothetical protein PACG_05428 [Pseudomonas aeruginosa C3719]
gi|254245171|ref|ZP_04938493.1| hypothetical protein PA2G_06059 [Pseudomonas aeruginosa 2192]
gi|9946784|gb|AAG04273.1|AE004523_1 probable C4-dicarboxylate-binding periplasmic protein [Pseudomonas
aeruginosa PAO1]
gi|126171168|gb|EAZ56679.1| hypothetical protein PACG_05428 [Pseudomonas aeruginosa C3719]
gi|126198549|gb|EAZ62612.1| hypothetical protein PA2G_06059 [Pseudomonas aeruginosa 2192]
Length = 331
Score = 39.0 bits (89), Expect = 0.95, Method: Composition-based stats.
Identities = 31/289 (10%), Positives = 81/289 (28%), Gaps = 27/289 (9%)
Query: 1 MYKILA-VCLFLTTFSISYARDADSCTPVRFADT---GWTDIAATTAMTSVILEEILGYK 56
M+K + L S +A ++F+ + ++E+ LG +
Sbjct: 1 MFKTMVRALLCALAIGGSCLANAAQPIVIKFSHVVAENTPKGQ-GALLFKKLVEQRLGGR 59
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLE-KFIAPYLEEGSIKLVAENLQGAK---- 111
+ + F K + + Y + I + +
Sbjct: 60 VEVDVYPNSSLFGDGKEMEALLLGDVQMLAPSLAKFEQYTRKVQIFDLPFLFDDIQAVDR 119
Query: 112 -----YMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSL 166
A+ GI K+L A +EP + + ++ +
Sbjct: 120 FQRSPQGRALLTSMQGKGILGLAYWHNGMKQLSANRPLLEPE-DARGLKFRVQASDVLNE 178
Query: 167 KGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV 226
+ +L S SF+++ + + + S+ + ++ +
Sbjct: 179 QFRQLRAISRKMSFAEVYQGLQTGVVN-----GTENTWSNYESQKVNEVQKYFTESNHGL 233
Query: 227 Y---TVVRSDYLDKCP-NISRLLKNIKFSVALENEMMKLILNNKQDRQF 271
+ + + + P +I L+ I + ++ +D +
Sbjct: 234 VDYMVITNAKFWNGLPADIREELQRIM--DEVTVQVNLEAERLNRDARQ 280
>gi|184156370|ref|YP_001844709.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein
[Acinetobacter baumannii ACICU]
gi|183207964|gb|ACC55362.1| ABC-type nitrate/sulfonate/bicarbonate transport system protein,
periplasmic component [Acinetobacter baumannii ACICU]
Length = 327
Score = 39.0 bits (89), Expect = 0.95, Method: Composition-based stats.
Identities = 28/275 (10%), Positives = 76/275 (27%), Gaps = 31/275 (11%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSV--ILEEIL-GYKTN 58
+ AV + T + + +R + + A+ + E+ K
Sbjct: 17 KRFSAVAVLGLTIAAPAWAIDPTVKELRIG---FQKSSINFAIAKQQKLFEQEFPNAKIT 73
Query: 59 IKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
P +L +D+ + P A + + E + + V
Sbjct: 74 WNEFPAGPQILEALAVGSLDVGVTGDTP---PVYAQAAGKPLYYIAYEAAKPLASAILVP 130
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
K K+L K ++ G+ + ++ + I +
Sbjct: 131 K----------NSQLKQLKDLKGKRIALQKGSSSHYLLVQAVRKAGLKWSDITPIWLTP- 179
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDK 237
+ R + + W+P+ ++ L + + + +++ +
Sbjct: 180 ---ADARAAFQKGAVDAWAIWDPYYASAQLEDQARVLASGKGLSPNYT-FYLAAPNFVKQ 235
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
P L + N+ K + +++ +
Sbjct: 236 YPKAVPGL------IKQINQADKWVQSHQAETASA 264
>gi|170740516|ref|YP_001769171.1| NMT1/THI5-like domain-containing protein [Methylobacterium sp.
4-46]
gi|168194790|gb|ACA16737.1| NMT1/THI5 like domain protein [Methylobacterium sp. 4-46]
Length = 313
Score = 39.0 bits (89), Expect = 0.95, Method: Composition-based stats.
Identities = 38/286 (13%), Positives = 73/286 (25%), Gaps = 29/286 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M + + + A T V +GWT A T L G IK
Sbjct: 1 MRR---AAIGFCLAAAIAAPAYAQETKVTIGISGWTGFAPLTLAKEAGLFRKNGLDVTIK 57
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ ++++ + N K + ++
Sbjct: 58 KIPQGSRHLAIRSGDVQCAATTVETW--------------VAWNANGVPTKQIFQLDKSY 103
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
A G+ +I K G + PG + M+ N SLK +++
Sbjct: 104 GADGMAVRGEIGSIKDLKGKTVAASVPGTSPYFALAWMLKANGLSLKDVKVVNLEPGP-- 161
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ +++EP+ + + D+L + P
Sbjct: 162 --AAQAFIAGQNDAAMTYEPYLSSVRAAPQAGKIIATTLDYPIVMDTFGCTPDFLAQNPK 219
Query: 241 ISRLLKNIKFSVALEN--------EMMKLILNNKQDRQFVGRTMLR 278
++ L F E+M + + LR
Sbjct: 220 AAKALAESYFEALDLIAKDPAKAYEIMGADVKQTGEAFAASAKFLR 265
>gi|45440042|ref|NP_991581.1| taurine transporter substrate binding subunit [Yersinia pestis
biovar Microtus str. 91001]
gi|45434897|gb|AAS60458.1| putative taurine-binding periplasmic protein precursor [Yersinia
pestis biovar Microtus str. 91001]
Length = 352
Score = 39.0 bits (89), Expect = 0.97, Method: Composition-based stats.
Identities = 9/62 (14%), Positives = 17/62 (27%), Gaps = 1/62 (1%)
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISR 243
+ W P L ++ +G ++ VVR D+ P +
Sbjct: 181 AAWQRGDIDGAYVWAPAVSELAKTGTVLTDSAQVGQWGAPTLDVWVVRKDFAKAHPEVVT 240
Query: 244 LL 245
Sbjct: 241 AF 242
>gi|307704098|ref|ZP_07641026.1| bacterial extracellular solute-binding family protein
[Streptococcus mitis SK597]
gi|307622320|gb|EFO01329.1| bacterial extracellular solute-binding family protein
[Streptococcus mitis SK597]
Length = 348
Score = 39.0 bits (89), Expect = 0.98, Method: Composition-based stats.
Identities = 39/301 (12%), Positives = 86/301 (28%), Gaps = 53/301 (17%)
Query: 1 MYK--ILAVCLFLTTFSISYARDADS----------CTPVRFADTGWTDIAATTAMTSVI 48
M K + L F ++ +S + ++ + +
Sbjct: 1 MKKKWMYYAACGLALFGLAACSSNESADGDSSDKGDGGSLVVYSPN-SEGLIGATIPAF- 58
Query: 49 LEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP--------------- 93
EE G K + F+ L+++ + A
Sbjct: 59 -EEKYGIKVELIQAGTGELFKKLESEKEAPVADVIFGGSYTQYATHGELFENYTSKENDN 117
Query: 94 --YLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEG 151
+ + ++ D+ + I+ Y D+ K EL KI +P N
Sbjct: 118 VIKEYQNTTGYSTPYTLDGSVLIVNPDLTKGMNIEGYSDLLK--PELKGKIATADPANSS 175
Query: 152 N-----------QRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEP 200
+ Q + F LI+ +S S + + + AV LS+E
Sbjct: 176 SAFAQLTNMLQAQGGYKDDKAWGYVKDLFTLIDGKIGSSSSGVYKAVADGEMAVGLSYE- 234
Query: 201 HPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP---NISRLLKNIKFSVALENE 257
+ + + ++ E +V+ + + K N + + S +++
Sbjct: 235 ---DPAVKLLNDGANIKVVYPKEGTVFLPASAAIVKKAKNMENAKKFID-FIISQEVQDT 290
Query: 258 M 258
+
Sbjct: 291 L 291
>gi|323493147|ref|ZP_08098278.1| ABC-type amino acid transport/signal transduction system,
periplasmic component [Vibrio brasiliensis LMG 20546]
gi|323312618|gb|EGA65751.1| ABC-type amino acid transport/signal transduction system,
periplasmic component [Vibrio brasiliensis LMG 20546]
Length = 248
Score = 39.0 bits (89), Expect = 0.99, Method: Composition-based stats.
Identities = 20/176 (11%), Positives = 44/176 (25%), Gaps = 18/176 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWT---------DIAATTAMTSVILEE 51
M ++ + L ++A VRFA W + T +
Sbjct: 1 MGRLQVLASALLLSISAHA----EEKLVRFAIGEWPPYTSASNRPEQTVTQQIVVEAFVS 56
Query: 52 ILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAK 111
GY+ + ++ D + S + Y + + V
Sbjct: 57 Q-GYQVKLDYFPWSRAYKLASEGKYDGSFPWIQNSQRDELFLYSDAIFTQTVVFFYHQDS 115
Query: 112 YMLAVNDVGFALGI----KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK 163
+ + YQ + + + I+ ++ I I+
Sbjct: 116 EFSWQQIKDLNQYVIGGTQDYQTVFFLDQYGIEQTISIDEETSFSKLIKKRIDAYP 171
>gi|222444973|ref|ZP_03607488.1| hypothetical protein METSMIALI_00589 [Methanobrevibacter smithii
DSM 2375]
gi|222434538|gb|EEE41703.1| hypothetical protein METSMIALI_00589 [Methanobrevibacter smithii
DSM 2375]
Length = 316
Score = 39.0 bits (89), Expect = 0.99, Method: Composition-based stats.
Identities = 40/297 (13%), Positives = 81/297 (27%), Gaps = 39/297 (13%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV-PVTFRSLKNKGIDIF 79
V AA + + + G T + ++ + +D+
Sbjct: 27 SNQDDGTVTIGYLPSDHDAALFIADAQDMYQKEGINTKLVQFNNGGDLMTAMASGEVDVG 86
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
P L + V G + + + I + G
Sbjct: 87 YVGITPVLSSIEKGVPVKVIS--------------GVQTEGSGIVVSNSSGITSVQDLEG 132
Query: 140 AKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE-ASELASFSQIRRDQRNNIPAVFLSW 198
I G I M+ + + + + ++N L++
Sbjct: 133 KSIAT-----PGEASIQYMLLKYYLNQNNIDIKDLKVSAMKVPSMNDALKSNQIDGMLTY 187
Query: 199 EPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEM 258
EP + N + G D+L + P+ ++ + I A
Sbjct: 188 EPFVTTAVENGNTELVDSSEIIPGHPCCVVAASDDFLKEHPDEAKKIVEIH-DNAT---- 242
Query: 259 MKLILNNKQD-----RQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPS--RQLERFMN 308
K + N D + + +PD+ K L G+ G D + +++ FMN
Sbjct: 243 -KYVQENPDDSVSQLPKDIV-----ANPDIEKKSLSGINFVSGLDDAYKQKVLDFMN 293
>gi|332873540|ref|ZP_08441489.1| ABC transporter, substrate-binding protein, aliphatic sulfonates
family [Acinetobacter baumannii 6014059]
gi|332738237|gb|EGJ69115.1| ABC transporter, substrate-binding protein, aliphatic sulfonates
family [Acinetobacter baumannii 6014059]
Length = 327
Score = 39.0 bits (89), Expect = 0.99, Method: Composition-based stats.
Identities = 28/275 (10%), Positives = 76/275 (27%), Gaps = 31/275 (11%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSV--ILEEIL-GYKTN 58
+ AV + T + + +R + + A+ + E+ K
Sbjct: 17 KRFSAVAVLGFTIAAPAWAIDPTVKELRIG---FQKSSINFAIAKQQKLFEQEFPNAKIT 73
Query: 59 IKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
P +L +D+ + P A + + E + + V
Sbjct: 74 WNEFPAGPQILEALAVGSLDVGVTGDTP---PVYAQAAGKPLYYIAYEAAKPLASAILVP 130
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
K K+L K ++ G+ + ++ + I +
Sbjct: 131 K----------NSQLKQLKDLKGKRIALQKGSSSHYLLVQAVRKAGLKWSDITPIWLTP- 179
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDK 237
+ R + + W+P+ ++ L + + + +++ +
Sbjct: 180 ---ADARAAFQKGAVDAWAIWDPYYASAQLEDQARVLAPGKGLSPNYT-FYLAAPNFVKQ 235
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
P L + N+ K + +++ +
Sbjct: 236 YPKAVPGL------IKQINQADKWVQSHQAETASA 264
>gi|56965156|ref|YP_176888.1| nitrate/sulfonate/bicarbonate ABC transporter substrate-binding
protein [Bacillus clausii KSM-K16]
gi|56911400|dbj|BAD65927.1| nitrate/sulfonate/bicarbonate ABC transporter substrate-binding
protein [Bacillus clausii KSM-K16]
Length = 319
Score = 39.0 bits (89), Expect = 0.99, Method: Composition-based stats.
Identities = 29/281 (10%), Positives = 69/281 (24%), Gaps = 40/281 (14%)
Query: 1 MYKILAVCLFLTTFSISYA-----RDADSCTPVRFADTGWT------DIAATTAMTSVIL 49
M K+ L + A A+ V + A +
Sbjct: 1 MRKMAVFGLSFGVAVVLAACNDPGAAAEKGETVTIGYQKGALTLSLKEDEAFARTMA--- 57
Query: 50 EEILGYKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQ 108
LGY T +L + D+ PS+ +
Sbjct: 58 --DLGYSLEWAEFNTGSSTLEALGSGSTDLANAGDTPSIYAIANRQPIDYIAATDNAPYS 115
Query: 109 GAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
+ V GI +D+ + + +++ +
Sbjct: 116 ---EGILVRP---DSGIDRVEDLDGKRIAFNRASIS-------QYLLYKALDSVGLTFAD 162
Query: 169 FRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYT 228
+ + +++W+P+ S+ +++ + G +
Sbjct: 163 IEPVYLGP----ADANLAFEQGNVDAWVTWDPYLAVSEEKGNHVIATAD--GLASYRSFY 216
Query: 229 VVRSDYLDKCPNI----SRLLKNIKFSVALENEMMKLILNN 265
SD+ D+ P L+ + ++ + I+
Sbjct: 217 FANSDFADQHPEAVLAYVEALQRVGTTIESDASEAAAIMEK 257
>gi|27365872|ref|NP_761400.1| tungstate ABC transporter periplasmic binding protein [Vibrio
vulnificus CMCP6]
gi|37679897|ref|NP_934506.1| ABC-type tungstate transport system, permease component [Vibrio
vulnificus YJ016]
gi|320156328|ref|YP_004188707.1| tungstate ABC transporter periplasmic binding protein [Vibrio
vulnificus MO6-24/O]
gi|27362021|gb|AAO10927.1| ABC-type tungstate transport system, periplasmic binding protein
[Vibrio vulnificus CMCP6]
gi|37198643|dbj|BAC94477.1| ABC-type tungstate transport system, permease component [Vibrio
vulnificus YJ016]
gi|319931640|gb|ADV86504.1| ABC-type tungstate transport system periplasmic binding protein
[Vibrio vulnificus MO6-24/O]
Length = 272
Score = 39.0 bits (89), Expect = 0.99, Method: Composition-based stats.
Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 7/97 (7%)
Query: 1 MYKI-LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYK 56
M K+ L + T + AD VR A T + + +L E+ GYK
Sbjct: 1 MNKVALTLAATSITLVSFSSFSADDVHRVRLAT---TTSTYHSGLLDYLLPEFEKDTGYK 57
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP 93
++ + + +N +D+ M + + F+
Sbjct: 58 VDVLAAGTGKSLKMGENGDVDLVMTHAPKAEATFVEK 94
>gi|254038878|ref|ZP_04872930.1| lipoprotein NlpA [Escherichia sp. 1_1_43]
gi|226838843|gb|EEH70870.1| lipoprotein NlpA [Escherichia sp. 1_1_43]
Length = 272
Score = 38.7 bits (88), Expect = 1.0, Method: Composition-based stats.
Identities = 20/238 (8%), Positives = 56/238 (23%), Gaps = 19/238 (7%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
+ + ++ + + + +E G + + + N
Sbjct: 26 QSSRDAKHIKVGVINGAEQDV-AEVAKKVAKEKYGLDVELVGFSGSLLPNDATN---HGE 81
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
+ F+ + KLVA G++ IK+ I +
Sbjct: 82 LDANVFQHRPFLEQDNQAHGYKLVAV-----GNTFVFPMAGYSKKIKTVAQIKEGATVAI 136
Query: 140 AKIYGIEPGNEGNQRILDMI---NNNKFSLKGFRLIEASELASFSQIRRD-----QRNNI 191
+ +I + + ++ +
Sbjct: 137 PNDPTNLGRALLLLQKEKLITLKEGKGLLPTALDITDNPRHLQIMELEGAQLPRVLDDPK 196
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
V + + + L+ + E V +V + N+ L++ +
Sbjct: 197 VDVAIISTTYIQQTGLSPVHDSVFIEDKNSP--YVNILVAREDNKNAENVKEFLQSYQ 252
>gi|312109993|ref|YP_003988309.1| aliphatic sulfonate ABC transporter periplasmic protein
[Geobacillus sp. Y4.1MC1]
gi|311215094|gb|ADP73698.1| aliphatic sulfonates family ABC transporter, periplasmic
ligand-binding protein [Geobacillus sp. Y4.1MC1]
Length = 341
Score = 38.7 bits (88), Expect = 1.0, Method: Composition-based stats.
Identities = 32/239 (13%), Positives = 74/239 (30%), Gaps = 23/239 (9%)
Query: 51 EILGYKTN-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQG 109
E G K I+ + P F ++ + +D P + A + K
Sbjct: 64 EKEGVKVKWIEFQSGPPHFEAMASNNLDFGGVGNSPVISAQAAGIEFKEISKAADGVKGD 123
Query: 110 AKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
A + V +K + K + G+ G + + +
Sbjct: 124 A---IIVPQGSEIQSLKDLKG----------KKIAVAKGSSGFNFLYKALEHAGLKASDV 170
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV 229
+I+ + + + WEP + + + + V
Sbjct: 171 EMIQLQPD----EAQAAFDTRKVDAWAIWEPFISYEVIKKEARIIADGEDLKAYSPSFIV 226
Query: 230 VRSDYLDKCPNI-SRLL----KNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDL 283
R+ ++++ P++ + L K ++ +E +++ K+ + V LR +P L
Sbjct: 227 ARTGFIEEHPDLTVQFLKIYEKARRWQNDHFDEAVEIYAKAKKIDKEVVVRALRNNPSL 285
>gi|296138935|ref|YP_003646178.1| substrate-binding region of ABC-type glycine betaine transporter
[Tsukamurella paurometabola DSM 20162]
gi|296027069|gb|ADG77839.1| Substrate-binding region of ABC-type glycine betaine transport
system [Tsukamurella paurometabola DSM 20162]
Length = 299
Score = 38.7 bits (88), Expect = 1.0, Method: Composition-based stats.
Identities = 29/270 (10%), Positives = 69/270 (25%), Gaps = 17/270 (6%)
Query: 23 DSCTPVRFADTGWTDIAATTAMTSVILEE-ILGYKTNIKLLAVPVTFRSLKNKGIDIFMG 81
S V A + + L + + + +++ + +
Sbjct: 34 ASTGTVTLATADDIASRIEGVIYANALRGIGTPVEVRLGIGPGDAAVAAVERGEVTVAPA 93
Query: 82 YWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQD-IAKYKKELGA 140
+++ + + K ++ + V D + +
Sbjct: 94 LTGALWDRYRPGVPQPAAEKKETKDAKAQWDAQFVAVSAVLPEGLGLGDPTLALDQPMLY 153
Query: 141 KIYGIEP-------GNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPA 193
G EP G G + + G + + + + R+ +
Sbjct: 154 TRTGGEPASLRDCEGLAGPVAVPRGSPADIAGRYGCAVGPVTVVDDDAAAAREVTDGRAG 213
Query: 194 VFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI--KFS 251
+ LN P G +V + R D L N + L I + +
Sbjct: 214 LAQLGTLSAAAQKLNQVADPDGA----VPSRAVVPLFRRDGLTSQQN--KRLSAIAGELT 267
Query: 252 VALENEMMKLILNNKQDRQFVGRTMLRTHP 281
M++ + + ++ V HP
Sbjct: 268 TIDLAAMVEKVRSGEKTVDEVTGQWAADHP 297
>gi|317154924|ref|YP_004122972.1| hypothetical protein Daes_3237 [Desulfovibrio aespoeensis Aspo-2]
gi|316945175|gb|ADU64226.1| hypothetical protein Daes_3237 [Desulfovibrio aespoeensis Aspo-2]
Length = 312
Score = 38.7 bits (88), Expect = 1.0, Method: Composition-based stats.
Identities = 29/292 (9%), Positives = 65/292 (22%), Gaps = 40/292 (13%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTD--IAATTAMTSVILEEILGYKTN 58
M+ L LF+ I+ + +R D EE G
Sbjct: 1 MFTRLLTALFMVIMMIAL-TIPANAETIRVGFIPVGDCLQLYVAEEMGYFAEE--GITVE 57
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
L + + + + E ++A + +
Sbjct: 58 KTPLKGGSLIAMAVE---AGELDAGWSNTVSLVMAEDREFDFAILAPGAFETESHREHSL 114
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ + K K + I I + N +L+E
Sbjct: 115 LVAKGSTITRFTDLKGKTVAINALGNINEIA-----ITALAEENGMDSSTIKLVEVPFPQ 169
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV--YTVVRSDYLD 236
+ L+ EP + + + +G+ + + ++
Sbjct: 170 MLG----ALESGAVDAVLTLEPFVTLGKSSGARILEPAALKSYGDRFLIAAWFAKRTWMQ 225
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
+ P I+ + + T+P + L
Sbjct: 226 EHPVIAEGFRRAVLK---------------------ASEFIETNPAKAREML 256
>gi|108809281|ref|YP_653197.1| taurine transporter substrate binding subunit [Yersinia pestis
Antiqua]
gi|167398679|ref|ZP_02304203.1| taurine ABC transporter, periplasmic taurine-binding protein
[Yersinia pestis biovar Antiqua str. UG05-0454]
gi|108781194|gb|ABG15252.1| putative taurine-binding periplasmic protein precursor [Yersinia
pestis Antiqua]
gi|167051183|gb|EDR62591.1| taurine ABC transporter, periplasmic taurine-binding protein
[Yersinia pestis biovar Antiqua str. UG05-0454]
Length = 346
Score = 38.7 bits (88), Expect = 1.0, Method: Composition-based stats.
Identities = 9/62 (14%), Positives = 17/62 (27%), Gaps = 1/62 (1%)
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPNISR 243
+ W P L ++ +G ++ VVR D+ P +
Sbjct: 181 AAWQRGDIDGAYVWAPAVSELAKTGTVLTDSAQVGQWGAPTLDVWVVRKDFAKAHPEVVT 240
Query: 244 LL 245
Sbjct: 241 AF 242
>gi|120596907|ref|YP_961481.1| extracellular solute-binding protein [Shewanella sp. W3-18-1]
gi|120557000|gb|ABM22927.1| extracellular solute-binding protein, family 1 [Shewanella sp.
W3-18-1]
gi|319424492|gb|ADV52566.1| ABC tungstate transporter, periplasmic ligand-binding subunit,
TupA [Shewanella putrefaciens 200]
Length = 274
Score = 38.7 bits (88), Expect = 1.0, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 38/96 (39%), Gaps = 9/96 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYKT 57
M +L + + + ++ A+ S ++ A T T+ + + +L E GYK
Sbjct: 8 MKSLLGLVVTASLLTVLPAQ---STEIIKLATTTSTEN---SGLLQDLLPKFESESGYKV 61
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP 93
+ + + +D+ M + + KF+A
Sbjct: 62 QVIATGTGKALKLGEQGDVDLVMTHAPSAEAKFVAD 97
>gi|169797762|ref|YP_001715555.1| alkanesulfonate ABC transporter periplasmic-binding protein
[Acinetobacter baumannii AYE]
gi|213155438|ref|YP_002317483.1| aliphatic sulfonates-binding protein [Acinetobacter baumannii
AB0057]
gi|215485113|ref|YP_002327354.1| Putative aliphatic sulfonates-binding protein precursor
[Acinetobacter baumannii AB307-0294]
gi|301347646|ref|ZP_07228387.1| Putative aliphatic sulfonates-binding protein precursor
[Acinetobacter baumannii AB056]
gi|301513526|ref|ZP_07238763.1| Putative aliphatic sulfonates-binding protein precursor
[Acinetobacter baumannii AB058]
gi|301595706|ref|ZP_07240714.1| Putative aliphatic sulfonates-binding protein precursor
[Acinetobacter baumannii AB059]
gi|169150689|emb|CAM88599.1| alkanesulfonate transport protein (ABC superfamily, peri_bind)
[Acinetobacter baumannii AYE]
gi|213054598|gb|ACJ39500.1| aliphatic sulfonates-binding protein [Acinetobacter baumannii
AB0057]
gi|213988609|gb|ACJ58908.1| Putative aliphatic sulfonates-binding protein precursor
[Acinetobacter baumannii AB307-0294]
Length = 327
Score = 38.7 bits (88), Expect = 1.0, Method: Composition-based stats.
Identities = 28/275 (10%), Positives = 76/275 (27%), Gaps = 31/275 (11%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSV--ILEEIL-GYKTN 58
+ AV + T + + +R + + A+ + E+ K
Sbjct: 17 KRFSAVAVLGLTIAAPAWAIDPTVKELRIG---FQKSSINFAIAKQQKLFEQEFPNAKIT 73
Query: 59 IKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
P +L +D+ + P A + + E + + V
Sbjct: 74 WNEFPAGPQILEALAVGSLDVGVTGDTP---PVYAQAAGKPLYYIAYEAAKPLASAILVP 130
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
K K+L K ++ G+ + ++ + I +
Sbjct: 131 K----------NSQLKQLKDLKGKRIALQKGSSSHYLLVQAVRKAGLKWSDITPIWLTP- 179
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDK 237
+ R + + W+P+ ++ L + + + +++ +
Sbjct: 180 ---ADARAAFQKGAVDAWAIWDPYYASAQLEDQARVLASGKGLSPNYT-FYLAAPNFVKQ 235
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
P L + N+ K + +++ +
Sbjct: 236 YPKAVPGL------IKQINQADKWVQSHQAETASA 264
>gi|148976159|ref|ZP_01812902.1| hypothetical protein VSWAT3_07636 [Vibrionales bacterium SWAT-3]
gi|145964554|gb|EDK29808.1| hypothetical protein VSWAT3_07636 [Vibrionales bacterium SWAT-3]
Length = 268
Score = 38.7 bits (88), Expect = 1.0, Method: Composition-based stats.
Identities = 36/271 (13%), Positives = 75/271 (27%), Gaps = 26/271 (9%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYKTN 58
K + + + + A A+ T ++ A T + + +L E+ G K +
Sbjct: 1 MKAIPLTIAALSIVSYSASSAEDTTHIKLAT---TTSTYHSGLLDYLLPEFEKDSGIKVD 57
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKF-------IAPYLEEGSIKLVAENLQGAK 111
+ + R +N +D+ M + + F + L +V AK
Sbjct: 58 VLAAGTGKSLRMGENGDVDLVMTHAPKAEANFVEKGYGVLPRKLMYNDFVIVGPESDPAK 117
Query: 112 YM--LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
AV DV A+ + +++ K + + G
Sbjct: 118 VESQKAVADVFKAIATNNVTFVSRGDDSGTHKKEMGIWAQTKMEPNFG-----GYRSVGQ 172
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEA---SV 226
+ +AS Q + + L ++ S+
Sbjct: 173 GMGPTLNMASEMQGYTMTDRGT-WLAYQNKLDLKILFQGDENLFNPYQVILVNPERYPSI 231
Query: 227 YTVVRSDYLDK--CPNISRLLKNIKFSVALE 255
+ + D P +L+ N K
Sbjct: 232 HYQAAKTFSDWLVNPKGQKLINNFKLHGKQL 262
>gi|261350453|ref|ZP_05975870.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Methanobrevibacter smithii
DSM 2374]
gi|288861236|gb|EFC93534.1| ABC transporter, quaternary amine uptake transporter family,
substrate-binding protein [Methanobrevibacter smithii
DSM 2374]
Length = 316
Score = 38.7 bits (88), Expect = 1.0, Method: Composition-based stats.
Identities = 40/297 (13%), Positives = 81/297 (27%), Gaps = 39/297 (13%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV-PVTFRSLKNKGIDIF 79
V AA + + + G T + ++ + +D+
Sbjct: 27 SNQDDGTVTIGYLPSDHDAALFIADAQDMYQKEGINTKLVQFNNGGDLMTAMASGEVDVG 86
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
P L + V G + + + I + G
Sbjct: 87 YVGITPVLSSIEKGVPVKVIS--------------GVQTEGSGIVVSNSSGITSVQDLEG 132
Query: 140 AKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE-ASELASFSQIRRDQRNNIPAVFLSW 198
I G I M+ + + + + ++N L++
Sbjct: 133 KSIAT-----SGEASIQYMLLKYYLNQNNIDIKDLKVSAMKVPSMNDALKSNQIDGMLTY 187
Query: 199 EPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEM 258
EP + N + G D+L + P+ ++ + I A
Sbjct: 188 EPFVTTAVENGNTELVDSSEIIPGHPCCVVAASDDFLKEHPDEAKKIVEIH-DNAT---- 242
Query: 259 MKLILNNKQD-----RQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPS--RQLERFMN 308
K + N D + + +PD+ K L G+ G D + +++ FMN
Sbjct: 243 -KYVQENPDDSVSQLPKDIV-----ANPDIEKKSLSGINFVSGLDDAYKQKVLDFMN 293
>gi|225165792|ref|ZP_03727578.1| ABC-type nitrate/sulfonate/bicarbonate transport systems
periplasmic components-like protein [Opitutaceae
bacterium TAV2]
gi|224799968|gb|EEG18411.1| ABC-type nitrate/sulfonate/bicarbonate transport systems
periplasmic components-like protein [Opitutaceae
bacterium TAV2]
Length = 394
Score = 38.7 bits (88), Expect = 1.0, Method: Composition-based stats.
Identities = 33/290 (11%), Positives = 66/290 (22%), Gaps = 50/290 (17%)
Query: 1 MYKILAVCLFLTTFSISYARDADSC-TPVRFADTGWTDIAATTAMTSVILEEIL----GY 55
M +I+ + A + TG + A + E+ G
Sbjct: 1 MKRIILFGFSFAALFAASTTHAQQALKKITIGHTG-SSCQAPVYVAK---EKGFFAEEGL 56
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
+ + L I + F+ P + ++ A QG Y+ A
Sbjct: 57 DVDFVVGDWNFLREGLAFGKIQ----AAQGLVMNFLKPIEQGLDVRFTAGIHQGCIYIFA 112
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
+KS ++ K K+ I + I+
Sbjct: 113 P----KDSPLKSVAEL-KGKRIGVPGIGSAPWILATRAVAAEGIDVKSGVEW-------- 159
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPH---PINSDLNIHYLPGGEEISGFGEASVYTVVRS 232
+++ V + +P +N+ L G+ E VV
Sbjct: 160 RAYPPGELKLALDRGDVDVIATLDPAARVILNTGTVKTILDQGKTEPFKDEYCCVVVVNG 219
Query: 233 DYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPD 282
+ + L + +P
Sbjct: 220 KVARDDQDTAARLTRAILK---------------------ASKWVAANPQ 248
>gi|146309713|ref|YP_001174787.1| cytoplasmic membrane lipoprotein-28 [Enterobacter sp. 638]
gi|145316589|gb|ABP58736.1| lipoprotein, YaeC family [Enterobacter sp. 638]
Length = 266
Score = 38.7 bits (88), Expect = 1.0, Method: Composition-based stats.
Identities = 26/275 (9%), Positives = 65/275 (23%), Gaps = 21/275 (7%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M L + + ++ + + + +E G + +
Sbjct: 1 MKLKFGALLLAGLLLAGCDQSGSNAKHIKVGVINGAEQDV-AEVAKKVAKEKYGLEVELV 59
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ + N + F+A + + KLVA G
Sbjct: 60 GFSGSLLPNDATN---QGELDANVFQHRPFLAEDNKAHNYKLVAVA-----NTFVFPMAG 111
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK--------FSLKGFRLI 172
++ +KS ++ + +I +
Sbjct: 112 YSRKVKSVSELKDGATIAIPNDPTNLGRALLLLQNQKLITLKPDTGLLPTALDITANPKK 171
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRS 232
+Q+ R + V + + + + G I V VV
Sbjct: 172 LKIMELEGAQLPRVLDDPKVDVAIISTTY--LQQTGLSPVHDGVFIEDKNSPYVNIVVTR 229
Query: 233 DYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQ 267
+ N+ +++ + + + I N
Sbjct: 230 EDNKDAENVKEFIQSYQ--SPEVAKAAEKIFNGGA 262
>gi|322419783|ref|YP_004199006.1| ABC-type phosphate/phosphonate transport system periplasmic
component-like protein [Geobacter sp. M18]
gi|320126170|gb|ADW13730.1| ABC-type phosphate/phosphonate transport system periplasmic
component-like protein [Geobacter sp. M18]
Length = 274
Score = 38.7 bits (88), Expect = 1.0, Method: Composition-based stats.
Identities = 14/73 (19%), Positives = 22/73 (30%), Gaps = 4/73 (5%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTS---VILEEILGYKT 57
M K+L +C L + TP+ + LE+ LGY+
Sbjct: 1 MKKLLCICCTLAATGFLTSS-PSLATPLTVGIAPQGNARIVLETYQPLRQYLEKTLGYQV 59
Query: 58 NIKLLAVPVTFRS 70
+I F
Sbjct: 60 DIVTAPDVDEFAR 72
>gi|254501556|ref|ZP_05113707.1| hypothetical protein SADFL11_1593 [Labrenzia alexandrii DFL-11]
gi|222437627|gb|EEE44306.1| hypothetical protein SADFL11_1593 [Labrenzia alexandrii DFL-11]
Length = 232
Score = 38.7 bits (88), Expect = 1.0, Method: Composition-based stats.
Identities = 16/119 (13%), Positives = 32/119 (26%), Gaps = 15/119 (12%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWT--------DIAATTAMTSVILEEI 52
M I + + +F ++ A AD V+ W D T +L+
Sbjct: 1 MKLIKTLSAVVVSFGLTAAAQAD---TVKIGVGEWAPYIGESLPDQGLHTKRVLDVLKAA 57
Query: 53 LGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEK---FIAPYLEEGSIKLVAENLQ 108
GY ++ T + + + E ++ N +
Sbjct: 58 -GYDVELEFSPWKRTLEVARRGDTAATFSWSHSEDRAADFIYPKVPLEEQTDVIFYNKE 115
>gi|169826143|ref|YP_001696301.1| polysaccharide deacetylase pdaA [Lysinibacillus sphaericus C3-41]
gi|168990631|gb|ACA38171.1| Probable polysaccharide deacetylase pdaA precursor [Lysinibacillus
sphaericus C3-41]
Length = 464
Score = 38.7 bits (88), Expect = 1.0, Method: Composition-based stats.
Identities = 26/259 (10%), Positives = 74/259 (28%), Gaps = 19/259 (7%)
Query: 31 ADTGWTDIAATTA--------MTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGY 82
+ D+ A +T+ I EE LGYK +++ + M
Sbjct: 100 GTLSFPDVTALNYDQTYEEIYLTNQIFEEHLGYKPKFVRSRSGDITDNMRLAAAALDMKA 159
Query: 83 WYPSLEKFIAPYLE-EGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAK 141
+ ++ + + ++ +N I + +A+ ++
Sbjct: 160 VIGLSINPLDRKMQSAQDLIDYIDKYIDRGSIIHLNTYINPAIIDAIPLLAQLAEKHDYT 219
Query: 142 IYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPH 201
I + + + + L + + + I F W
Sbjct: 220 ITTLSDVIDERYLTKSLEEIAGYDAVKPNLNYENVEPHLYYRKETSKKEIAITFDDWAHE 279
Query: 202 PINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKL 261
+ + + F ++ S +K P +++L+ ++ + +
Sbjct: 280 QQVKAVLDVLKKYNIKSTFF-------LIGSGV-EKNPQLAKLI--LEEGHEVASHSYYH 329
Query: 262 ILNNKQDRQFVGRTMLRTH 280
+ K + + +++ H
Sbjct: 330 LDVTKMTPEEIQDDLVKAH 348
>gi|325507514|gb|ADZ19150.1| ABC-type probable sulfate transporter, periplasmic binding protein
[Clostridium acetobutylicum EA 2018]
Length = 342
Score = 38.7 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 46/278 (16%), Positives = 86/278 (30%), Gaps = 25/278 (8%)
Query: 1 MYKI-----LAVCLFLTTFSISYARDADSCTPVRFADT-GWTDIAATTAMTSVILEEILG 54
M KI L+ +F ++ + V+ A T A L++ LG
Sbjct: 1 MKKIKIGVLLSTIIFTIGILSGCETKSEKLSQVKIAYFGNITHSQALLQRDDGSLQKALG 60
Query: 55 YKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
T IK + ++ +I P G ++
Sbjct: 61 SNTKIK-------WEKFSAGSAEVESLLAGEVDIGYIGPGPA----INAYTKSNGDIQVI 109
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILD-MINNNKFSLKGFRLIE 173
A A+ + K K+L K I L ++ N +
Sbjct: 110 AGAADAGAILVSKKGADIKSVKDLKNKRVAIPQYGNTQDLTLRILLYENGLKDRAKGGNV 169
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEP--HPINSDLNIHYLPGGEEISGFGEASVYTVV- 230
A S I+ L EP + +++ + E+I G+ VV
Sbjct: 170 EIVEAENSDIKTLLGKGSIDAALVPEPWGTRLVNEVKAKVVLNYEDIWRKGQYPTAIVVA 229
Query: 231 RSDYLDKCPNIS-RLLKNIKFSVALENEMMKLILNNKQ 267
R +++ P+I + +KN+ V N++ N+++
Sbjct: 230 RKEFVKAHPDIVEKFVKNL---VEETNKVNSNRDNSEK 264
>gi|330874194|gb|EGH08343.1| sulfonate ABC transporter periplasmic sulfonate-binding protein
SsuA [Pseudomonas syringae pv. morsprunorum str.
M302280PT]
Length = 321
Score = 38.7 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 25/268 (9%), Positives = 69/268 (25%), Gaps = 45/268 (16%)
Query: 23 DSCTPVRFADTGWTDIA---ATTAMTSVILEEILGYKTNIKLLAV-PVTFRSLKNKGIDI 78
+R + + A ++ + E+ G K P L ID
Sbjct: 26 AQAEDLRIGYQKYGTLVLLKAKGSLEKRLAEQ--GVKVQWTEFPGGPQLLEGLNVGSIDF 83
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL 138
+ P A + + E + V +K +
Sbjct: 84 GVTGETP---PVFAQAAGADLLYVAYEPPAPTSEAILVPKDSPITSVKDLKG-------- 132
Query: 139 GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
K + G+ + ++ + + + + + R ++ W
Sbjct: 133 --KKVVLNKGSNVHYLLVKALEDAGLKYTDIQTVFLPP----ADARAAFERGSVDAWVIW 186
Query: 199 EPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEM 258
+P+ ++ + ++ +G + + + Y K P + +
Sbjct: 187 DPYQAAAEKQLQVRTL-KDGTGIVDNHQFYLATKPYAQKNPKV-------------IQAL 232
Query: 259 MKLILNNKQDRQFVGRTMLRTHPDLLKN 286
++ + + +PD +
Sbjct: 233 IEEVR--------AVGEWSKANPDEVTK 252
>gi|260777894|ref|ZP_05886787.1| amino acid ABC transporter amino acid-binding protein [Vibrio
coralliilyticus ATCC BAA-450]
gi|260605907|gb|EEX32192.1| amino acid ABC transporter amino acid-binding protein [Vibrio
coralliilyticus ATCC BAA-450]
Length = 249
Score = 38.7 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 15/102 (14%), Positives = 28/102 (27%), Gaps = 11/102 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWT--------DIAATTAMTSVILEEI 52
M ++ L LT + + V+ A+ W + T + E
Sbjct: 1 MRSLIKTFLCLTVSLLFASL--AQANTVKLANGEWAPYQSKSLKNGGFMTQIVREAFEAE 58
Query: 53 LGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPY 94
GY+ + F K D + + + Y
Sbjct: 59 -GYQVEFTYMPWKRGFEESKAGNFDGSLIWSKNPDREQFFHY 99
>gi|167622090|ref|YP_001672384.1| extracellular solute-binding protein [Shewanella halifaxensis
HAW-EB4]
gi|167352112|gb|ABZ74725.1| extracellular solute-binding protein family 1 [Shewanella
halifaxensis HAW-EB4]
Length = 270
Score = 38.7 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 13/96 (13%), Positives = 36/96 (37%), Gaps = 9/96 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYKT 57
+ +++ + + A+ + ++ A T T+ + + +L E+ GYK
Sbjct: 4 LKRVIGLAVTAALVVGMPAQANE---VIKLATTTSTEN---SGLLKNLLPTFEKETGYKV 57
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP 93
+ + + +D+ M + + KF+
Sbjct: 58 QVIATGTGKALKLARQGDVDVVMTHAPGAEAKFVEE 93
>gi|212637656|ref|YP_002314181.1| sulfate transport system substrate-binding protein [Shewanella
piezotolerans WP3]
gi|212559140|gb|ACJ31594.1| Sulfate transport system substrate-binding protein, putative
[Shewanella piezotolerans WP3]
Length = 270
Score = 38.7 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 23/274 (8%), Positives = 70/274 (25%), Gaps = 23/274 (8%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYKT 57
+ +++ + + F + + ++ A T T+ + + +L E GYK
Sbjct: 4 LKRVIGLAVTAALFVGMPVQANE---VIKLATTTSTEN---SGLLKNLLPTFEAETGYKV 57
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKF----IAPYLEEGSIKLVAENLQGAKYM 113
+ + + +D+ M + + KF
Sbjct: 58 QVIATGTGKALKLARQGDVDVVMTHAPAAEAKFVSEGYGRLPRGIMENDFVILGPKNDPA 117
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
++ IAK ++ + F+
Sbjct: 118 KIRPSDSAEA---AFAKIAKSGAPFISRGDNSGTNMKELILWNKADVKPDFAGYTSVGQG 174
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+ + + + F+++ +++ G + + +
Sbjct: 175 MGKTLLMANELQGYTLSDRGTFVAYS-----GKIDLAVDFDGGKALANP-YQIMLINAEK 228
Query: 234 YLDKCPNISRLLKNIKFSVALENEM-MKLILNNK 266
Y D ++ L + S + + + +
Sbjct: 229 YPDLNHKGAKALSDWLISAEAQGMINNYKVQGEQ 262
>gi|78221950|ref|YP_383697.1| succinyl-CoA synthetase (ADP-forming) subunit alpha [Geobacter
metallireducens GS-15]
gi|78193205|gb|ABB30972.1| succinyl-CoA synthetase (ADP-forming) alpha subunit [Geobacter
metallireducens GS-15]
Length = 291
Score = 38.7 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 8/58 (13%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 242 SRLLKNIKFSVAL-ENEMMKLILNNKQDRQFVGRTMLRTHPDL-LKNWLIGVTTFDGQ 297
+ + +K + E + +I + +R + + ++ GVT G+
Sbjct: 186 MQFIDVLKLFNEDKQTEAVFMIGEIGGSAEEDAAEWIRENMKKPVAAFIAGVTAPPGK 243
>gi|257469609|ref|ZP_05633701.1| molybdenum ABC transporter (molybdate-binding protein)
[Fusobacterium ulcerans ATCC 49185]
gi|317063845|ref|ZP_07928330.1| molybdenum ABC transporter [Fusobacterium ulcerans ATCC 49185]
gi|313689521|gb|EFS26356.1| molybdenum ABC transporter [Fusobacterium ulcerans ATCC 49185]
Length = 249
Score = 38.7 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 22/251 (8%), Positives = 58/251 (23%), Gaps = 24/251 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILE----EILGYK 56
M KI + + + + A + + A+ + S I E E
Sbjct: 1 MKKIFTTMVAVVSIFLLAACGKTEKKEITI-----SAAASLNEVLSQIAENYQKENKNIT 55
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
NI A + ++ F+ + + + + ++ + + + V
Sbjct: 56 VNINFGASGALKKQIEGGAPVDFVFFASKKDLEDLK----KQNLVSEKFSKDILENTMVV 111
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ D G + ++ N + S+
Sbjct: 112 AGRKKIDDLSEMLDHK--------VAIGDPDIVPAGRYAKQVLENAGLWDRMQENFVLSK 163
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
+ + ++ + S + D
Sbjct: 164 DVRSAMQY--VDLYEVDYAMIYKTDSRVMKNAEIVYEVPNTLHTPIIYSCGIL-NDKERD 220
Query: 237 KCPNISRLLKN 247
+ + + L N
Sbjct: 221 EVKDFYKFLTN 231
>gi|294163293|gb|ADE61838.1| Sip11 [Streptococcus iniae]
Length = 344
Score = 38.7 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 40/277 (14%), Positives = 82/277 (29%), Gaps = 46/277 (16%)
Query: 1 MYKILAVCLFLTTFSISYAR---------DADSCTPVRFADTGWTDIAATTAMTSVILEE 51
M L +T +S A + + ++ + + EE
Sbjct: 1 MRNKFFSLLVASTTVLSLAACGSKQEAKKEDKGSDKLVVYSPN-SEGLINATIPAF--EE 57
Query: 52 ILGYKTNIKLLAVPVTFRSLKNK------GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAE 105
G K + F+ ++++ I Y + + V +
Sbjct: 58 KYGVKVELIQAGTGELFKKVESEASKPVADIVFGGSYTQYAQHPSLFEKYTAKDNDKVIK 117
Query: 106 NLQGAKYM-----------LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQ- 153
+ Q + D+ + IK Y+D+ EL KI +P N +
Sbjct: 118 DYQNTTGYSTPYTLDGSVLIVNPDLTKGMKIKGYKDLLN--PELKGKIATADPANSSSAF 175
Query: 154 ----------RILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPI 203
D + + F L++ +S S + + + AV LS+E
Sbjct: 176 AQLTNILLANGGYDKDQSWSYVKDLFTLVDGKINSSSSNVYKSVADGEMAVGLSYE---- 231
Query: 204 NSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ + + ++ E SV+ + + PN
Sbjct: 232 DPSVKLLNDGANIKVIYPEEGSVFLPASAAIIKNAPN 268
>gi|238751323|ref|ZP_04612816.1| ABC transporter, substrate-binding protein [Yersinia rohdei ATCC
43380]
gi|238710381|gb|EEQ02606.1| ABC transporter, substrate-binding protein [Yersinia rohdei ATCC
43380]
Length = 317
Score = 38.7 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 36/282 (12%), Positives = 73/282 (25%), Gaps = 35/282 (12%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M + L + A+ + A M S+I+ E +
Sbjct: 1 MQHFIKSILLVVALITQMPAFANDADTLNITYV-----TAPFNMPSIIMREKGFLDNEMA 55
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ V + + IA L S L N + + A +
Sbjct: 56 VYNKKVNNSVITSGAKQTQAMAAGKI---DIASVLGSSSAILAKANGAPIEIIAAFSRGP 112
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
A + + K +L K G NQ ++ + + +L I A+
Sbjct: 113 KAYTLMTMDKNIKSISDLKGKKVAGPKGTVLNQLLVAALKSQGLTLNDIEYINMDIPAAS 172
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ + H I+++ + L + + RSD++ P
Sbjct: 173 AALLS----GKVDAATLAGAHVIDAEKSGAVLLADGKGLISP--TTVIAARSDWVKNNPE 226
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPD 282
+ + + ++ HPD
Sbjct: 227 LVKAYFSAHLK---------------------AIDFIKQHPD 247
>gi|323698394|ref|ZP_08110306.1| molybdenum ABC transporter, periplasmic molybdate-binding protein
[Desulfovibrio sp. ND132]
gi|323458326|gb|EGB14191.1| molybdenum ABC transporter, periplasmic molybdate-binding protein
[Desulfovibrio desulfuricans ND132]
Length = 244
Score = 38.7 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 30/263 (11%), Positives = 66/263 (25%), Gaps = 34/263 (12%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADT-GWTDIAATTAMTSVIL---EEILGYK 56
M +I ++ L L S A AD + A +T + I+ E+ G K
Sbjct: 1 MKRICSLILVLCLLVPSGAFAAD----LFIAQAANFT------PVLKEIIPLFEKSTGLK 50
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ + + N + + + + +L
Sbjct: 51 VEATYASTGKLYGQIVNNAPYDMLMAADEKRPAKL----FADGLAEEPFVYAKGQVVLWS 106
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
ND F G + K + P + + + + + +
Sbjct: 107 NDKNFCGGDWKATVVNPAVKRVSIANTETAPYGTSSMKAMQAV-----GIWDKVQPKLVF 161
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD-YL 235
S SQ + V + + G++ V+++ L
Sbjct: 162 GQSISQAFQFASTGSADVG--------FCAYSSVFTDEGKKGCFTVVDEAPPVIQAACVL 213
Query: 236 DK--CPNISRLLKNIKFSVALEN 256
P + + ++
Sbjct: 214 KSAPHPEAAAKFVKFLATPEVQA 236
>gi|283833892|ref|ZP_06353633.1| outer membrane protein X [Citrobacter youngae ATCC 29220]
gi|291070563|gb|EFE08672.1| outer membrane protein X [Citrobacter youngae ATCC 29220]
Length = 171
Score = 38.7 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 19/130 (14%), Positives = 30/130 (23%), Gaps = 2/130 (1%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M KI + + S + + V A M L Y+ +
Sbjct: 1 MKKIACLSALAAVLAFSAGTAVAATSTVTGGYAQSDAQGAANKMNGFNL--KYRYEQDNN 58
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
L V +F + D Y A + + G Y N
Sbjct: 59 PLGVIGSFTYTEKDRTDASGDYNKTQYYGITAGPAYRLNDWASIYGVVGVGYGKFQNAAT 118
Query: 121 FALGIKSYQD 130
A +
Sbjct: 119 PADNHTTSDY 128
>gi|167577391|ref|ZP_02370265.1| taurine ABC transporter, periplasmic binding protein [Burkholderia
thailandensis TXDOH]
Length = 336
Score = 38.7 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 32/252 (12%), Positives = 66/252 (26%), Gaps = 21/252 (8%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-I 59
+ +IL F + A V A D A E+ G+K N
Sbjct: 3 LKRILVAAAFAVAAFSTVQSPAAWAETVNVAYQYGADPAKLAQ-AGAAYEKATGWKINWR 61
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ + +L + + I P + + + G L V
Sbjct: 62 RFDSGADVVAALASGDVQIGDVGQSPFTAAVSRGVPIQAVVLNA---ITGVSEALVVRG- 117
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+L K + + +L + + + +++
Sbjct: 118 ---------GAHIDKPADLVGKTIATPYASNCHYALLAALKHWGIDARRVKIVNLGP--- 165
Query: 180 FSQIRRDQRNNIPAVFLSWEPH-PINSDLNIHYLPGGEEISGFGEASVY-TVVRSDYLDK 237
++I + +W+P L E+ +G + VR D+
Sbjct: 166 -TEIVAAWERGVIDAAYTWDPALGRAKASGGKVLVDSAEVGKWGAPTFDLWAVRRDFAQA 224
Query: 238 CPNISRLLKNIK 249
P+ N+
Sbjct: 225 HPDFVSKFVNVT 236
>gi|182436786|ref|YP_001824505.1| putative ABC transporter substrate-binding protein [Streptomyces
griseus subsp. griseus NBRC 13350]
gi|178465302|dbj|BAG19822.1| putative ABC transporter substrate-binding protein [Streptomyces
griseus subsp. griseus NBRC 13350]
Length = 350
Score = 38.7 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 25/225 (11%), Positives = 56/225 (24%), Gaps = 19/225 (8%)
Query: 26 TPVRFADTGWTDIAATTAMTSVILEEIL-GYKTN-IKLLAVPVTFRSLKNKGIDIFMGYW 83
+R A + LE+ L GY K + + +D+
Sbjct: 40 RTIRIAYQSFPSGDLIVK-EKGWLEKALPGYDVKWTKFDSGASINTAFVAGSVDLAAIGS 98
Query: 84 YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIY 143
P AP + V + + K+L K
Sbjct: 99 SPVARGLSAPLNIPYEVTWVLDVAGDN-----------EALVARNGAKISSVKDLVGKKV 147
Query: 144 GIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPI 203
+ + +L ++ +L++ + W P
Sbjct: 148 ATPFSSTSHYSLLAALDRAGVDASKVQLLDLEPQDILA----AWTRGDIDATYVWLPTLE 203
Query: 204 NSDLNIHYLPGGEEISGFGEASVYT-VVRSDYLDKCPNISRLLKN 247
+ E++ G+ ++ V + +L P++ +
Sbjct: 204 ELKKTGEVIVSSRELAADGKPTLDLGVAATRFLKAHPDVLPAWRK 248
>gi|261821801|ref|YP_003259907.1| short-chain dehydrogenase/reductase SDR [Pectobacterium wasabiae
WPP163]
gi|261605814|gb|ACX88300.1| short-chain dehydrogenase/reductase SDR [Pectobacterium wasabiae
WPP163]
Length = 244
Score = 38.7 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 7/42 (16%), Positives = 19/42 (45%)
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEM 258
+ ++T R ++ ++CP +LL +I + + +
Sbjct: 22 KHFHAAGWRIFTASRQNWAEECPWAEKLLNHIHLDLEDIDSL 63
>gi|253688611|ref|YP_003017801.1| short-chain dehydrogenase/reductase SDR [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|251755189|gb|ACT13265.1| short-chain dehydrogenase/reductase SDR [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 244
Score = 38.7 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 7/42 (16%), Positives = 19/42 (45%)
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEM 258
+ ++T R ++ ++CP +LL +I + + +
Sbjct: 22 KHFHAAGWRIFTASRQNWAEECPWAEKLLNHIHLDLEDIDSL 63
>gi|330957669|gb|EGH57929.1| short chain dehydrogenase/reductase family oxidoreductase
[Pseudomonas syringae pv. maculicola str. ES4326]
Length = 244
Score = 38.7 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 9/47 (19%), Positives = 19/47 (40%)
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLIL 263
+ V+T R +++D CP LL +I + + + +
Sbjct: 22 KHFNAAGWEVFTASRKNWVDDCPWAEGLLNHIHLDLEDIDSVSASMA 68
>gi|147676570|ref|YP_001210785.1| ABC-type nitrate/sulfonate/bicarbonate transport system,
periplasmic components [Pelotomaculum thermopropionicum
SI]
gi|146272667|dbj|BAF58416.1| ABC-type nitrate/sulfonate/bicarbonate transport system,
periplasmic components [Pelotomaculum thermopropionicum
SI]
Length = 348
Score = 38.7 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 13/109 (11%), Positives = 33/109 (30%), Gaps = 20/109 (18%)
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ ++ + + + P + G + + E +V+ +
Sbjct: 164 AGLKDAAKGGTVTIVPADNPDIL-----TLISRGEVDAALVPEPWGSRIVKQAGASIVLD 218
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+ + K++ A+ L+ HPDL++ WL
Sbjct: 219 AGEVWRGGKYTTAVVIASN---------------KFLKEHPDLVQKWLE 252
>gi|322506240|gb|ADX01694.1| ssuA [Acinetobacter baumannii 1656-2]
Length = 327
Score = 38.7 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 27/275 (9%), Positives = 76/275 (27%), Gaps = 31/275 (11%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSV--ILEEIL-GYKTN 58
+ AV + T + + +R + + A+ + E+ K
Sbjct: 17 KRFSAVAVLGLTIAAPAWAIDPTVKELRIG---FQKSSINFAIAKQQKLFEQEFPNAKIT 73
Query: 59 IKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
P +L +D+ + P A + + E + + V
Sbjct: 74 WNEFPAGPQILEALAVGSLDVGVTGDTP---PVYAQAAGKPLYYIAYEAAKPLASAILVP 130
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
K K++ K ++ G+ + ++ + I +
Sbjct: 131 K----------NSQLKQLKDIKGKRIALQKGSSSHYLLVQAVRKAGLKWSDITPIWLTP- 179
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDK 237
+ R + + W+P+ ++ L + + + +++ +
Sbjct: 180 ---ADARAAFQKGAVDAWAIWDPYYASAQLEDQARVLASGKGLSPNYT-FYLAAPNFVKQ 235
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
P L + N+ K + +++ +
Sbjct: 236 YPKAVPGL------IKQINQADKWVQSHQAETASA 264
>gi|148243574|ref|YP_001228731.1| ABC-type nitrate/sulfonate/bicarbonate transport system,
periplasmic component [Synechococcus sp. RCC307]
gi|147851884|emb|CAK29378.1| ABC-type nitrate/sulfonate/bicarbonate transport system,
periplasmic component [Synechococcus sp. RCC307]
Length = 332
Score = 38.7 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 26/281 (9%), Positives = 70/281 (24%), Gaps = 40/281 (14%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK-LL 62
+ A + + S + P+ + W L E G +K
Sbjct: 9 LFAGLAVVLAVACSKPSTSIGGEPIVLGYSNWAGWWPWAIAVEEKLFEKNGVNVEMKWFD 68
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
+ + ID F+ + LV +N G ++
Sbjct: 69 GYVQSMETFAAGKIDGN-SQTLNDTISFLPGENGGEVVVLVNDNSAGNDQII------AD 121
Query: 123 LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
I++ D+ + + + +L + + + +I+ +
Sbjct: 122 KAIETITDLKGKTVAVEEGVV--------DDFLLSLALRDVGLSRDDVIIKGMPTDQAAT 173
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ + F + + + ++ + + T V D + + P
Sbjct: 174 AFAAGKVDAVGAFPPYTGTAM--QRDGAHVIASSKEYPGAIPDLLT-VSGDLIKERPEDV 230
Query: 243 RLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDL 283
+ + + R + +P+
Sbjct: 231 QKIVKTWWD---------------------VREFMAANPEK 250
>gi|72389148|ref|XP_844869.1| hypothetical protein [Trypanosoma brucei TREU927]
gi|62358644|gb|AAX79102.1| hypothetical protein, conserved [Trypanosoma brucei]
gi|70801403|gb|AAZ11310.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 611
Score = 38.7 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 6/30 (20%), Positives = 9/30 (30%)
Query: 271 FVGRTMLRTHPDLLKNWLIGVTTFDGQDPS 300
+ L WL V G+D +
Sbjct: 244 AAAKEWLEAQQSKYNRWLEKVHRLQGKDTA 273
>gi|71910050|ref|YP_281600.1| amino acid ABC transporter permease [Streptococcus pyogenes
MGAS5005]
gi|71852832|gb|AAZ50855.1| ABC transporter amino acid-binding protein/amino acid ABC
transporter permease protein [Streptococcus pyogenes
MGAS5005]
Length = 522
Score = 38.7 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 30/291 (10%), Positives = 68/291 (23%), Gaps = 27/291 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFAD------TGWTDIAATTAMTSVILEE--- 51
M K++ CL A + +R WT A+ +V +E
Sbjct: 1 MKKLILSCLVALALLFGGMSRAQANQYLRVGMEAAYAPFNWTQDDASNG--AVPIEGTSQ 58
Query: 52 -ILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGA 110
GY + + L + G I S N
Sbjct: 59 YANGYDVQVAKKVAKAMNKELLV-VKTSWTGLIPALTSGKIDMIAAGMSPTKERRNEISF 117
Query: 111 KYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
+ + A K+ + G + +
Sbjct: 118 SNSYYTSQPVLVVTANGKYADATSLKDFSGAKVTAQQGVWHVNLLTQLKGAK--LQTPMG 175
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
A S + + P + + + + E+ V
Sbjct: 176 DFSQMRQALTSGVIDAYISERPEAMTAEAADSRLKMITLK------KGFAVAESDAAIAV 229
Query: 231 -RSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNK---QDRQFVGRTML 277
D+ ++++L+ + + +M ++ + + + + L
Sbjct: 230 GMKKNDDRMATVNQVLEGFSQTDRM--ALMDDMVTKQPVEKKAEDAKASFL 278
>gi|327481587|gb|AEA84897.1| ABC transporter sulfonate/nitrate transport system
substrate-binding protein [Pseudomonas stutzeri DSM
4166]
Length = 456
Score = 38.7 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 32/296 (10%), Positives = 70/296 (23%), Gaps = 46/296 (15%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSV---ILEEIL----- 53
L L + + A + + + +L + L
Sbjct: 4 RNSLLATSLLGSVLLFSGPLAAETIRIGIGHQSMVTNTVSGGIVLEKLDLLNKHLPRTGK 63
Query: 54 ----GYKTN-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGS----IKLVA 104
Y+ + P + +D + YP + I +
Sbjct: 64 YADADYRIEFRDYDSGPPITNQMLAGKLDFGVMGDYPLIVNGAKFQATGKQQTRFIAVTG 123
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKF 164
NL+G + V Q +A + + G + + +
Sbjct: 124 YNLKGTGNGIVVPKDSP------VQSLADLAGKSLSTPVGSAA-----WGMTLKVLRDAG 172
Query: 165 SLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEA 224
L+ S + I + + W + + +I EA
Sbjct: 173 LSDKVTLVNQSPPVGAANIAAGKLDAHADFCP-WS-------EIMEFRGTARKIYDGSEA 224
Query: 225 SVYT----VVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
+ T VVR D+ + P + + + I ++ +
Sbjct: 225 GIPTFHGIVVRDDFAKQYPEVVEGVLKATLAAQQ------WISDDPRRAAEKVAEW 274
>gi|218694181|ref|YP_002401848.1| molybdate transporter periplasmic protein [Escherichia coli 55989]
gi|331682186|ref|ZP_08382808.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli H299]
gi|218350913|emb|CAU96611.1| molybdate transporter subunit ; periplasmic-binding component of
ABC superfamily [Escherichia coli 55989]
gi|324116186|gb|EGC10108.1| molybdate ABC transporter [Escherichia coli E1167]
gi|331080610|gb|EGI51786.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli H299]
Length = 257
Score = 38.7 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 26/264 (9%), Positives = 64/264 (24%), Gaps = 18/264 (6%)
Query: 1 MYKILAVCLFLTTFSISYARDA-DSCTPVRFADTGWTDIAATTAM--TSVILEEILGYKT 57
M + S + A +A + + + T AM + ++ G
Sbjct: 1 MARKWLNLFAGAALSFAVAGNALADEGKITV----FAAASLTNAMQDIATQYKKEKGVDV 56
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+ R ++ + + +K++ +++ +I + ++ V
Sbjct: 57 VSSFASSSTLARQIEAGAP---ADLFISADQKWMDYAVDKKAIDTASRQTLLGNSLVVVA 113
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
+ + L + I K + +
Sbjct: 114 PKASEQKDFTIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPA 173
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV------VR 231
N + + + + S E+ E V V
Sbjct: 174 EDVRGALALVERNEAPLGIVYGSDAVASKGVKVVATFPEDSHKKVEYPVAVVEGHNNATV 233
Query: 232 SDYLD--KCPNISRLLKNIKFSVA 253
+ D K P + + K F+
Sbjct: 234 KAFYDYLKGPQAAEIFKRYGFTTK 257
>gi|323516116|gb|ADX90497.1| ABC-type nitrate/sulfonate/bicarbonate transport system protein,
periplasmic component [Acinetobacter baumannii
TCDC-AB0715]
Length = 327
Score = 38.7 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 28/275 (10%), Positives = 76/275 (27%), Gaps = 31/275 (11%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSV--ILEEIL-GYKTN 58
+ AV + T + + +R + + A+ + E+ K
Sbjct: 17 KRFSAVAVLGFTIAAPAWAIDPTVKELRIG---FQKSSINFAIAKQQKLFEQEFPNAKIT 73
Query: 59 IKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
P +L +D+ + P A + + E + + V
Sbjct: 74 WNEFPAGPQILEALAVGSLDVGVTGDTP---PVYAQAAGKPLYYIAYEAAKPLASAILVP 130
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
K K+L K ++ G+ + ++ + I +
Sbjct: 131 K----------NSQLKQLKDLKGKRIALQKGSSSHYLLVQAVRKAGLKWSDITPIWLTP- 179
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDK 237
+ R + + W+P+ ++ L + + + +++ +
Sbjct: 180 ---ADARAAFQKGAVDAWAIWDPYYASAQLEDQARVLASGKGLSPNYT-FYLAAPNFVKQ 235
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
P L + N+ K + +++ +
Sbjct: 236 YPKAVPGL------IKQINQADKWVQSHQAETASA 264
>gi|71902896|ref|YP_279699.1| ABC transporter amino acid-binding protein [Streptococcus pyogenes
MGAS6180]
gi|71801991|gb|AAX71344.1| ABC transporter amino acid-binding protein [Streptococcus pyogenes
MGAS6180]
Length = 528
Score = 38.7 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 30/291 (10%), Positives = 68/291 (23%), Gaps = 27/291 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFAD------TGWTDIAATTAMTSVILEE--- 51
M K++ CL A + +R WT A+ +V +E
Sbjct: 7 MKKLILSCLVALALLFGGMSRAQANQYLRVGMEAAYAPFNWTQDDASNG--AVPIEGTSQ 64
Query: 52 -ILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGA 110
GY + + L + G I S N
Sbjct: 65 YANGYDVQVAKKVAKAMNKELLV-VKTSWTGLIPALTSGKIDMIAAGMSPTKERRNEISF 123
Query: 111 KYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
+ + A K+ + G + +
Sbjct: 124 SNSYYTSQPVLVVTANGKYADATSLKDFSGAKVTAQQGVWHVNLLTQLKGAK--LQTPMG 181
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
A S + + P + + + + E+ V
Sbjct: 182 DFSQMRQALTSGVIDAYISERPEAMTAEAADSRLKMITLK------KGFAVAESDAAIAV 235
Query: 231 -RSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNK---QDRQFVGRTML 277
D+ ++++L+ + + +M ++ + + + + L
Sbjct: 236 GMKKNDDRMATVNQVLEGFSQTDRM--ALMDDMVTKQPVEKKAEDAKASFL 284
>gi|193069573|ref|ZP_03050526.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli E110019]
gi|192957120|gb|EDV87570.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli E110019]
Length = 257
Score = 38.7 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 26/264 (9%), Positives = 63/264 (23%), Gaps = 18/264 (6%)
Query: 1 MYKILAVCLFLTTFSISYARDA-DSCTPVRFADTGWTDIAATTAM--TSVILEEILGYKT 57
M + S + A +A + + + T AM + ++ G
Sbjct: 1 MARKWLNLFAGAALSFAVAGNALADEGKITV----FAAASLTNAMQDIATQFKKEKGVDV 56
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+ R ++ + + +K++ +++ +I ++ V
Sbjct: 57 VSSFASSSTLARQIEAGAP---ADLFISADQKWMDYAVDKKAIDTATRQTLLGNSLVVVA 113
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
+ + L + I K + +
Sbjct: 114 PKASVQKDFTIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPA 173
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV------VR 231
N + + + + S E+ E V V
Sbjct: 174 EDVRGALALVERNEAPLGIVYGSDAVASKGVKVVATFPEDSHKKVEYPVAVVEGHNNATV 233
Query: 232 SDYLD--KCPNISRLLKNIKFSVA 253
+ D K P + + K F+
Sbjct: 234 KAFYDYLKGPQAAEIFKRYGFTTK 257
>gi|222833287|gb|EEE71764.1| predicted protein [Populus trichocarpa]
Length = 52
Score = 38.7 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 4/45 (8%), Positives = 13/45 (28%), Gaps = 3/45 (6%)
Query: 248 IKFSVALENEMMKLILNNKQDRQFV---GRTMLRTHPDLLKNWLI 289
++ V + ++ + + ++ H WL
Sbjct: 1 MQLPVGDISAQNHMMSQGQNKPSDINRHVDGWIKAHQKTFDGWLE 45
>gi|148263823|ref|YP_001230529.1| hypothetical protein Gura_1765 [Geobacter uraniireducens Rf4]
gi|146397323|gb|ABQ25956.1| hypothetical protein Gura_1765 [Geobacter uraniireducens Rf4]
Length = 192
Score = 38.7 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 12/113 (10%), Positives = 31/113 (27%), Gaps = 1/113 (0%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-I 59
M + + L L ++ A + + M + ++ E G I
Sbjct: 1 MRRSFFLLLMLLVLVLNQTAHACVGKILNIGIPNSANEQLLAEMIATLVTERTGTTVKII 60
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKY 112
++++K + I + +++ P + K
Sbjct: 61 VYKDERELYKAVKKGDVGILIENTDHAMKMVAKPRESNAKTAYETAKSEYRKN 113
>gi|329667484|gb|AEB93432.1| CRISPR-associated protein Cas1 [Lactobacillus johnsonii DPC 6026]
Length = 311
Score = 38.7 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 40/151 (26%), Gaps = 16/151 (10%)
Query: 155 ILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPG 214
D +N LI S+ S + V + + S+ +Y
Sbjct: 34 TRDGVNQIPIDDINLVLISTSQAVITSALISKLAEKQSKVIFVDDKYQPISETVDYYPGS 93
Query: 215 GE-----EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDR 269
+ E + K N +L+N K E + I N
Sbjct: 94 RNLAKLENQFRWNEKRKELLWTKIVTRKIQNQIAVLQNYKLDGEDIQEELDRIEINDSTN 153
Query: 270 QFV-----------GRTMLRTHPDLLKNWLI 289
+ G+ +R + D++ L
Sbjct: 154 REALAARKYFMKMFGKDFIRRNSDVINAALD 184
>gi|15800472|ref|NP_286484.1| molybdate transporter periplasmic protein [Escherichia coli O157:H7
EDL933]
gi|15830045|ref|NP_308818.1| molybdate transporter periplasmic protein [Escherichia coli O157:H7
str. Sakai]
gi|24111968|ref|NP_706478.1| molybdate transporter periplasmic protein [Shigella flexneri 2a
str. 301]
gi|30062081|ref|NP_836252.1| molybdate transporter periplasmic protein [Shigella flexneri 2a
str. 2457T]
gi|110804618|ref|YP_688138.1| molybdate transporter periplasmic protein [Shigella flexneri 5 str.
8401]
gi|168750256|ref|ZP_02775278.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli O157:H7 str. EC4113]
gi|168757053|ref|ZP_02782060.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli O157:H7 str. EC4401]
gi|168763354|ref|ZP_02788361.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli O157:H7 str. EC4501]
gi|168767209|ref|ZP_02792216.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli O157:H7 str. EC4486]
gi|168776491|ref|ZP_02801498.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli O157:H7 str. EC4196]
gi|168779252|ref|ZP_02804259.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli O157:H7 str. EC4076]
gi|168786923|ref|ZP_02811930.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli O157:H7 str. EC869]
gi|168800804|ref|ZP_02825811.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli O157:H7 str. EC508]
gi|195936752|ref|ZP_03082134.1| molybdate transporter periplasmic protein [Escherichia coli O157:H7
str. EC4024]
gi|208808745|ref|ZP_03251082.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli O157:H7 str. EC4206]
gi|208815045|ref|ZP_03256224.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli O157:H7 str. EC4045]
gi|208822273|ref|ZP_03262592.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli O157:H7 str. EC4042]
gi|209399552|ref|YP_002269391.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli O157:H7 str. EC4115]
gi|217325958|ref|ZP_03442042.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli O157:H7 str. TW14588]
gi|218553283|ref|YP_002386196.1| molybdate transporter periplasmic protein [Escherichia coli IAI1]
gi|218704084|ref|YP_002411603.1| molybdate transporter periplasmic protein [Escherichia coli UMN026]
gi|254791914|ref|YP_003076751.1| molybdate transporter periplasmic protein [Escherichia coli O157:H7
str. TW14359]
gi|261224467|ref|ZP_05938748.1| molybdate transporter subunit; periplasmic-binding component of ABC
superfamily protein [Escherichia coli O157:H7 str.
FRIK2000]
gi|261254541|ref|ZP_05947074.1| molybdate transporter subunit; periplasmic-binding component of ABC
superfamily protein [Escherichia coli O157:H7 str.
FRIK966]
gi|291281699|ref|YP_003498517.1| Molybdate ABC transporter periplasmic molybdate-binding protein
[Escherichia coli O55:H7 str. CB9615]
gi|293404010|ref|ZP_06648004.1| modA [Escherichia coli FVEC1412]
gi|293414043|ref|ZP_06656692.1| molybdate ABC transporter [Escherichia coli B185]
gi|293433024|ref|ZP_06661452.1| molybdate ABC transporter [Escherichia coli B088]
gi|298379790|ref|ZP_06989395.1| modA [Escherichia coli FVEC1302]
gi|300816407|ref|ZP_07096629.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli MS 107-1]
gi|300898251|ref|ZP_07116602.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli MS 198-1]
gi|300926161|ref|ZP_07141973.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli MS 182-1]
gi|301020766|ref|ZP_07184832.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli MS 69-1]
gi|301327955|ref|ZP_07221120.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli MS 78-1]
gi|331651765|ref|ZP_08352784.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli M718]
gi|331662116|ref|ZP_08363039.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli TA143]
gi|12513695|gb|AAG55092.1|AE005254_4 molybdate-binding periplasmic protein; permease [Escherichia coli
O157:H7 str. EDL933]
gi|13360250|dbj|BAB34214.1| molybdate-binding periplasmic permease protein [Escherichia coli
O157:H7 str. Sakai]
gi|24050779|gb|AAN42185.1| molybdate-binding periplasmic protein; permease [Shigella flexneri
2a str. 301]
gi|30040325|gb|AAP16058.1| molybdate-binding periplasmic protein; permease [Shigella flexneri
2a str. 2457T]
gi|110614166|gb|ABF02833.1| Molybdate-binding periplasmic protein precursor [Shigella flexneri
5 str. 8401]
gi|187768124|gb|EDU31968.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli O157:H7 str. EC4196]
gi|188015535|gb|EDU53657.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli O157:H7 str. EC4113]
gi|189003052|gb|EDU72038.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli O157:H7 str. EC4076]
gi|189355871|gb|EDU74290.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli O157:H7 str. EC4401]
gi|189363392|gb|EDU81811.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli O157:H7 str. EC4486]
gi|189366438|gb|EDU84854.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli O157:H7 str. EC4501]
gi|189373173|gb|EDU91589.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli O157:H7 str. EC869]
gi|189376982|gb|EDU95398.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli O157:H7 str. EC508]
gi|208728546|gb|EDZ78147.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli O157:H7 str. EC4206]
gi|208731693|gb|EDZ80381.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli O157:H7 str. EC4045]
gi|208737758|gb|EDZ85441.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli O157:H7 str. EC4042]
gi|209160952|gb|ACI38385.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli O157:H7 str. EC4115]
gi|209776238|gb|ACI86431.1| molybdate-binding periplasmic permease protein [Escherichia coli]
gi|209776240|gb|ACI86432.1| molybdate-binding periplasmic permease protein [Escherichia coli]
gi|209776242|gb|ACI86433.1| molybdate-binding periplasmic permease protein [Escherichia coli]
gi|209776244|gb|ACI86434.1| molybdate-binding periplasmic permease protein [Escherichia coli]
gi|209776246|gb|ACI86435.1| molybdate-binding periplasmic permease protein [Escherichia coli]
gi|217322179|gb|EEC30603.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli O157:H7 str. TW14588]
gi|218360051|emb|CAQ97598.1| molybdate transporter subunit ; periplasmic-binding component of
ABC superfamily [Escherichia coli IAI1]
gi|218431181|emb|CAR12057.1| molybdate transporter subunit ; periplasmic-binding component of
ABC superfamily [Escherichia coli UMN026]
gi|254591314|gb|ACT70675.1| molybdate transporter subunit; periplasmic-binding component of ABC
superfamily [Escherichia coli O157:H7 str. TW14359]
gi|281599928|gb|ADA72912.1| Molybdate-binding periplasmic protein; permease [Shigella flexneri
2002017]
gi|284920543|emb|CBG33605.1| molybdate ABC transporter, substrate-binding protein [Escherichia
coli 042]
gi|290761572|gb|ADD55533.1| Molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli O55:H7 str. CB9615]
gi|291323843|gb|EFE63265.1| molybdate ABC transporter [Escherichia coli B088]
gi|291428596|gb|EFF01621.1| modA [Escherichia coli FVEC1412]
gi|291434101|gb|EFF07074.1| molybdate ABC transporter [Escherichia coli B185]
gi|298279488|gb|EFI20996.1| modA [Escherichia coli FVEC1302]
gi|300358040|gb|EFJ73910.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli MS 198-1]
gi|300398491|gb|EFJ82029.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli MS 69-1]
gi|300417796|gb|EFK01107.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli MS 182-1]
gi|300531097|gb|EFK52159.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli MS 107-1]
gi|300845520|gb|EFK73280.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli MS 78-1]
gi|313649601|gb|EFS14025.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Shigella flexneri 2a str. 2457T]
gi|320193162|gb|EFW67802.1| Molybdenum ABC transporter, periplasmic molybdenum-binding protein
ModA [Escherichia coli O157:H7 str. EC1212]
gi|320637930|gb|EFX07703.1| molybdate transporter periplasmic protein [Escherichia coli O157:H7
str. G5101]
gi|320643328|gb|EFX12514.1| molybdate transporter periplasmic protein [Escherichia coli O157:H-
str. 493-89]
gi|320648671|gb|EFX17309.1| molybdate transporter periplasmic protein [Escherichia coli O157:H-
str. H 2687]
gi|320654264|gb|EFX22319.1| molybdate transporter periplasmic protein [Escherichia coli O55:H7
str. 3256-97 TW 07815]
gi|320659974|gb|EFX27516.1| molybdate transporter periplasmic protein [Escherichia coli O55:H7
str. USDA 5905]
gi|320664800|gb|EFX31938.1| molybdate transporter periplasmic protein [Escherichia coli O157:H7
str. LSU-61]
gi|326341773|gb|EGD65557.1| Molybdenum ABC transporter, periplasmic molybdenum-binding protein
ModA [Escherichia coli O157:H7 str. 1044]
gi|326345713|gb|EGD69452.1| Molybdenum ABC transporter, periplasmic molybdenum-binding protein
ModA [Escherichia coli O157:H7 str. 1125]
gi|331050043|gb|EGI22101.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli M718]
gi|331060538|gb|EGI32502.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli TA143]
gi|332760875|gb|EGJ91163.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Shigella flexneri 4343-70]
gi|332761168|gb|EGJ91454.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Shigella flexneri 2747-71]
gi|332763923|gb|EGJ94161.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Shigella flexneri K-671]
gi|333007333|gb|EGK26813.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Shigella flexneri VA-6]
gi|333007994|gb|EGK27470.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Shigella flexneri K-218]
gi|333010125|gb|EGK29560.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Shigella flexneri K-272]
gi|333021436|gb|EGK40686.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Shigella flexneri K-304]
Length = 257
Score = 38.7 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 26/264 (9%), Positives = 63/264 (23%), Gaps = 18/264 (6%)
Query: 1 MYKILAVCLFLTTFSISYARDA-DSCTPVRFADTGWTDIAATTAM--TSVILEEILGYKT 57
M + S + A +A + + + T AM + ++ G
Sbjct: 1 MARKWLNLFAGAALSFAVAGNALADEGKITV----FAAASLTNAMQDIATQYKKEKGVDV 56
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+ R ++ + + +K++ +++ +I ++ V
Sbjct: 57 VSSFASSSTLARQIEAGAP---ADLFISADQKWMDYAVDKKAIDTATRQTLLGNSLVVVA 113
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
+ + L + I K + +
Sbjct: 114 PKASEQKDFTIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPA 173
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV------VR 231
N + + + + S E+ E V V
Sbjct: 174 EDVRGALALVERNEAPLGIVYGSDAVASKGVKVVATFPEDSHKKVEYPVAVVEGHNNATV 233
Query: 232 SDYLD--KCPNISRLLKNIKFSVA 253
+ D K P + + K F+
Sbjct: 234 KAFYDYLKGPQAAEIFKRYGFTTK 257
>gi|82546067|ref|YP_410014.1| cytoplasmic membrane lipoprotein-28 [Shigella boydii Sb227]
gi|81247478|gb|ABB68186.1| lipoprotein 28 [Shigella boydii Sb227]
gi|320183358|gb|EFW58211.1| Methionine ABC transporter substrate-binding protein [Shigella
flexneri CDC 796-83]
gi|332089388|gb|EGI94492.1| D-methionine-binding lipoprotein metQ [Shigella boydii 3594-74]
Length = 272
Score = 38.7 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 19/238 (7%), Positives = 55/238 (23%), Gaps = 19/238 (7%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
+ + ++ + + + +E G + + + N
Sbjct: 26 QSSSDAKHIKVGVINGAEQDV-AEVAKKVAKEKYGLDVELVGFSGSLLPNDATN---HGE 81
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
+ F+ + KLVA G++ I + I +
Sbjct: 82 LDANVFQHRPFLEQDNQAHGYKLVAV-----GNTFVFPMAGYSKKITTVAQIKEGATVAI 136
Query: 140 AKIYGIEPGNEGNQRILDMI---NNNKFSLKGFRLIEASELASFSQIRRD-----QRNNI 191
+ +I + + ++ +
Sbjct: 137 PNDPTNLGRALLLLQKEKLITLKEGKGLLHTALDITDNPRHLQIMELEGAQLPRVLDDPK 196
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
V + + + L+ + E V +V + N+ L++ +
Sbjct: 197 VDVAIISTTYIQQTGLSPVHDSVFIEDKNSP--YVNILVAREDNKNAENVKEFLQSYQ 252
>gi|15606329|ref|NP_213708.1| LysR family transcriptional regulator [Aquifex aeolicus VF5]
gi|2983535|gb|AAC07110.1| transcriptional regulator (LysR family) [Aquifex aeolicus VF5]
Length = 306
Score = 38.7 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 11/86 (12%), Positives = 26/86 (30%), Gaps = 1/86 (1%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGY-KTNIKLLAVPVTFRSLKNKGIDIF 79
+ +R + + +E GY +++ + + N +D+
Sbjct: 98 SGKNGGVIRIGASSIPGNYLLPQLLGEFIENFKGYVNVELRVSDSQDIYEKVINGDVDLG 157
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAE 105
+ + P K A I +V
Sbjct: 158 IIGYLPRTNKVDAIKFYTDRILIVGN 183
>gi|17549602|ref|NP_522942.1| putative alkanesulfonates binding protein precursor [Ralstonia
solanacearum GMI1000]
gi|17431856|emb|CAD18534.1| putative alkanesulfonates binding protein precursor [Ralstonia
solanacearum GMI1000]
Length = 334
Score = 38.7 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 34/244 (13%), Positives = 74/244 (30%), Gaps = 25/244 (10%)
Query: 18 YARDADSCTPVRFADTG---WTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKN- 73
A AD VR + A A+ + + E LGY+ K N
Sbjct: 34 MAAAADPAGTVRIGFQKAGLLAVLKAQGALDTPLAE--LGYRIEWKEFPAGPQLLEALNA 91
Query: 74 KGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAK 133
ID + + A + + AE A L V D A G+ +
Sbjct: 92 GSIDF---GYTGAPPAVFAQAAGARFVYVGAEPGASANEALFVRDGSPARGVADLKG--- 145
Query: 134 YKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPA 193
K ++ G+ N ++ ++ +++ + I ++ R +
Sbjct: 146 -------KRIALQKGSSSNYLLVQLLKRAGLTVQDIQPIYLPP----AEARAAFESGAVD 194
Query: 194 VFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS-RLLKNIKFSV 252
++ W+P+ + + + + + ++ P +L ++ +
Sbjct: 195 AWVVWDPYYALAQTALKVRTLADYTGLPSPFN-FYEATPGFVQAHPRAVNAILAQLRTTG 253
Query: 253 ALEN 256
N
Sbjct: 254 LWVN 257
>gi|23100782|ref|NP_694249.1| hypothetical protein OB3327 [Oceanobacillus iheyensis HTE831]
gi|22779016|dbj|BAC15283.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 273
Score = 38.7 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 28/219 (12%), Positives = 56/219 (25%), Gaps = 19/219 (8%)
Query: 1 MYKILAVCLFLTTFSISYARDADSC----------TPVRFADTGWTDIAATTAMTSVILE 50
M K L + ++ A ++ + T +T + E
Sbjct: 1 MKKGLLTAIVFLAVALLAACGSEESSGASEGLYDDEKLVIGVTAGPHEEILEKVTELAEE 60
Query: 51 EILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGA 110
E + +T + V + +D+ + P +
Sbjct: 61 EGINIETEVFTDYVMPNVALDE-GELDLNIFQTEPYFNAIREDRNLDLVKSFDTVTFPMG 119
Query: 111 KYMLAVNDVGFALGIKSYQDIAKYKKEL-------GAKIYGIEPGNEGNQRILDMINNNK 163
Y L V DV + + A + ++P N + D I N
Sbjct: 120 IYSLDVGDVSELPEGATIGLPSDPTNSGRALLLFEQAGLIELDPETGINSTVRD-IEKNN 178
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHP 202
+ + L A ++ N A+ + P
Sbjct: 179 GNYEFVELDSAQIARQLEELDAAAINTNFAIEAGFTPTE 217
>gi|300907015|ref|ZP_07124684.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli MS 84-1]
gi|301304014|ref|ZP_07210131.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli MS 124-1]
gi|300401236|gb|EFJ84774.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli MS 84-1]
gi|300840621|gb|EFK68381.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli MS 124-1]
gi|315257676|gb|EFU37644.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli MS 85-1]
Length = 257
Score = 38.7 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 26/264 (9%), Positives = 63/264 (23%), Gaps = 18/264 (6%)
Query: 1 MYKILAVCLFLTTFSISYARDA-DSCTPVRFADTGWTDIAATTAM--TSVILEEILGYKT 57
M + S + A +A + + + T AM + ++ G
Sbjct: 1 MARKWLNLFAGAALSFAVAGNALADEGKITV----FAAASLTNAMQDIATQYKKEKGVDV 56
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+ R ++ + + +K++ +++ +I ++ V
Sbjct: 57 VSSFASSSTLARQIEAGAP---ADLFISADQKWMDYAVDKKAIDTATRQTLLGNSLVVVA 113
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
+ + L + I K + +
Sbjct: 114 PKASEQKDFTIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPA 173
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV------VR 231
N + + + + S E+ E V V
Sbjct: 174 EDVRGALALVERNEAPLGIVYGSDAVASKGVKVVAIFPEDSHKKVEYPVAVVEGHNNATV 233
Query: 232 SDYLD--KCPNISRLLKNIKFSVA 253
+ D K P + + K F+
Sbjct: 234 KAFYDYLKGPQAAEIFKRYGFTTK 257
>gi|94993627|ref|YP_601725.1| amino acid ABC transporter permease/substrate-binding protein
[Streptococcus pyogenes MGAS10750]
gi|94547135|gb|ABF37181.1| ABC transporter amino acid-binding protein / Amino acid ABC
transporter permease protein [Streptococcus pyogenes
MGAS10750]
Length = 528
Score = 38.7 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 30/291 (10%), Positives = 68/291 (23%), Gaps = 27/291 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFAD------TGWTDIAATTAMTSVILEE--- 51
M K++ CL A + +R WT A+ +V +E
Sbjct: 7 MKKLILSCLVALALLFGGMSRAQANQYLRVGMEAAYAPFNWTQDDASNG--AVPIEGTSQ 64
Query: 52 -ILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGA 110
GY + + L + G I S N
Sbjct: 65 YANGYDVQVAKKVAKAMNKELLV-VKTSWTGLIPALTSGKIDMIAAGMSSTKERRNEISF 123
Query: 111 KYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
+ + A K+ + G + +
Sbjct: 124 SNSYYTSQPVLVVTANGKYADATSLKDFSGAKVTAQQGVWHVNLLTQLKGAK--LQTPMG 181
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
A S + + P + + + + E+ V
Sbjct: 182 DFSQMRQALTSGVIDAYISERPEAMTAEAADSRLKMITLK------KGFAVAESDAAIAV 235
Query: 231 -RSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNK---QDRQFVGRTML 277
D+ ++++L+ + + +M ++ + + + + L
Sbjct: 236 GMKKNDDRMATVNQVLEGFSQTDRM--ALMDDMVTKQPVEKKAEDAKASFL 284
>gi|300895804|ref|ZP_07114389.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 198-1]
gi|300360275|gb|EFJ76145.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 198-1]
Length = 263
Score = 38.3 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 21/238 (8%), Positives = 55/238 (23%), Gaps = 19/238 (7%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
+ ++ + + + +E G + + + N
Sbjct: 17 QSNSDEKHIKVGVINGAEQDV-AEVAKKVAKEKYGLDVELVGFSGSLLPNDATN---HGE 72
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
+ F+ + KLVA G++ IK+ I +
Sbjct: 73 LDANVFQHRPFLEQDNQAHGYKLVAV-----GNTFVFPMAGYSKKIKTVAQIKEGATVAI 127
Query: 140 AKIYGIEPGNEGNQRILDMI---NNNKFSLKGFRLIEASELASFSQIRRD-----QRNNI 191
+ +I + E ++ +
Sbjct: 128 PNDPTNLGRALLLLQKEKLITLKEGKGLLPTALDITENPRHLQIMELEGAQLPRVLDDPK 187
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
V + + + L+ + E V +V + N+ L++ +
Sbjct: 188 VDVAIISTTYIQQTGLSPVHDSVFIEDKNSP--YVNILVAREDNKNAENVKEFLQSYQ 243
>gi|315505675|ref|YP_004084562.1| wgr domain-containing protein [Micromonospora sp. L5]
gi|315412294|gb|ADU10411.1| WGR domain-containing protein [Micromonospora sp. L5]
Length = 1227
Score = 38.3 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 9/99 (9%)
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN-ISR 243
R + SW P G A+++ P +
Sbjct: 590 RATEELARPLLPSWRPDESWGADEWMSRLAGRYELDALPAALH------LARTAPKSVGE 643
Query: 244 LLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPD 282
+L + ++ ++M L+ + + V R LR HP+
Sbjct: 644 VL--LPYTDGEVADLMADWLDRLKTGRPVARAWLRRHPE 680
>gi|302867920|ref|YP_003836557.1| WGR domain-containing protein [Micromonospora aurantiaca ATCC
27029]
gi|302570779|gb|ADL46981.1| WGR domain-containing protein [Micromonospora aurantiaca ATCC
27029]
Length = 1227
Score = 38.3 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 9/99 (9%)
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN-ISR 243
R + SW P G A+++ P +
Sbjct: 590 RATEELARPLLPSWRPDESWGADEWMSRLAGRYELDALPAALH------LARTAPKSVGE 643
Query: 244 LLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPD 282
+L + ++ ++M L+ + + V R LR HP+
Sbjct: 644 VL--LPYTDGEVADLMADWLDRLKTGRPVARAWLRRHPE 680
>gi|312113169|ref|YP_004010765.1| aliphatic sulfonates family ABC transporter periplasmic
ligand-binding protein [Rhodomicrobium vannielii ATCC
17100]
gi|311218298|gb|ADP69666.1| aliphatic sulfonates family ABC transporter, periplasmic
ligand-binding protein [Rhodomicrobium vannielii ATCC
17100]
Length = 318
Score = 38.3 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 28/297 (9%), Positives = 75/297 (25%), Gaps = 41/297 (13%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
+L + + A D VR T +L+ ++ +
Sbjct: 7 LLLAASCVVFGWQAPAAAEDKPDTVRIGFQ--KSSTLIT-----VLKTQGKLDAALQKIG 59
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFAL 123
V V + + + A + I A +
Sbjct: 60 VSVKWNEFTSGPP--MLEALNIGAIDLTADVADTVPIFAQAAGAKMIYVAQEAPSPTAQA 117
Query: 124 GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQI 183
+ K EL K + G G+ +L + + K + + + +
Sbjct: 118 ILIPATSELKSPAELKGKRVALTKGTGGHYLLLATLAKAGLTFKDIQPVYLGQADCRA-- 175
Query: 184 RRDQRNNIPAVFLSWEPHPINSDL--NIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNI 241
+++W+P+ ++ L G++++ + + + + P++
Sbjct: 176 --AFERGSVDAWVTWDPYLSAGEIQAGARVLADGKDVALYQRYY---LAATAFATARPDV 230
Query: 242 SR-LLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQ 297
+ + ++ +P L + D +
Sbjct: 231 LAVIFDELH----------------------AAGKWVKDNPQAAAELLKPIWGLDTK 265
>gi|71734445|ref|YP_276995.1| sulfonate ABC transporter periplasmic sulfonate-binding protein
SsuA [Pseudomonas syringae pv. phaseolicola 1448A]
gi|298489303|ref|ZP_07007319.1| Alkanesulfonates-binding protein [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|71554998|gb|AAZ34209.1| sulfonate ABC transporter, periplasmic sulfonate-binding protein
SsuA [Pseudomonas syringae pv. phaseolicola 1448A]
gi|298156202|gb|EFH97306.1| Alkanesulfonates-binding protein [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|320326459|gb|EFW82511.1| sulfonate ABC transporter, periplasmic sulfonate-binding protein
SsuA [Pseudomonas syringae pv. glycinea str. B076]
gi|320331752|gb|EFW87690.1| sulfonate ABC transporter, periplasmic sulfonate-binding protein
SsuA [Pseudomonas syringae pv. glycinea str. race 4]
gi|330872578|gb|EGH06727.1| sulfonate ABC transporter periplasmic sulfonate-binding protein
SsuA [Pseudomonas syringae pv. glycinea str. race 4]
gi|330987200|gb|EGH85303.1| sulfonate ABC transporter periplasmic sulfonate-binding protein
SsuA [Pseudomonas syringae pv. lachrymans str. M301315]
Length = 321
Score = 38.3 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 26/268 (9%), Positives = 69/268 (25%), Gaps = 45/268 (16%)
Query: 23 DSCTPVRFADTGWTDIA---ATTAMTSVILEEILGYKTNIKLLAV-PVTFRSLKNKGIDI 78
+R + + A ++ + E+ G K P L ID
Sbjct: 26 AQAEDLRIGYQKYGTLVLLKAKGSLEKRLAEQ--GVKVQWTEFPGGPQLLEGLNVGSIDF 83
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL 138
+ P A + + E + V +K +
Sbjct: 84 GVTGETP---PVFAQAAGADLLYVAYEPPAPTSEAILVPKDSPITSVKDLKG-------- 132
Query: 139 GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
K + G+ + ++ + + + + + R ++ W
Sbjct: 133 --KKVVLNKGSNVHYLLVKALEDAGLKYTDIQTVFLPP----ADARAAFERGSVDAWVIW 186
Query: 199 EPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEM 258
+P+ ++ + ++ +G + + + Y K P + +
Sbjct: 187 DPYQAAAEKQLQARTL-KDGTGIVDNHQFYLATKPYAQKNPKV-------------IQAL 232
Query: 259 MKLILNNKQDRQFVGRTMLRTHPDLLKN 286
++ + + HPD +
Sbjct: 233 IEEVR--------AVGEWSKAHPDEVTK 252
>gi|289626098|ref|ZP_06459052.1| sulfonate ABC transporter, periplasmic sulfonate-binding protein,
putative [Pseudomonas syringae pv. aesculi str.
NCPPB3681]
gi|289651126|ref|ZP_06482469.1| sulfonate ABC transporter, periplasmic sulfonate-binding protein,
putative [Pseudomonas syringae pv. aesculi str. 2250]
gi|330868943|gb|EGH03652.1| sulfonate ABC transporter periplasmic sulfonate-binding protein
[Pseudomonas syringae pv. aesculi str. 0893_23]
Length = 321
Score = 38.3 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 26/268 (9%), Positives = 69/268 (25%), Gaps = 45/268 (16%)
Query: 23 DSCTPVRFADTGWTDIA---ATTAMTSVILEEILGYKTNIKLLAV-PVTFRSLKNKGIDI 78
+R + + A ++ + E+ G K P L ID
Sbjct: 26 AQAEDLRIGYQKYGTLVLLKAKGSLEKRLAEQ--GVKVQWTEFPGGPQLLEGLNVGSIDF 83
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL 138
+ P A + + E + V +K +
Sbjct: 84 GVTGETP---PVFAQAAGADLLYVAYEPPAPTSEAILVPKDSPITSVKDLKG-------- 132
Query: 139 GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
K + G+ + ++ + + + + + R ++ W
Sbjct: 133 --KKVVLNKGSNVHYLLVKALEDAGLKYTDIQTVFLPP----ADARAAFERGSVDAWVIW 186
Query: 199 EPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEM 258
+P+ ++ + ++ +G + + + Y K P + +
Sbjct: 187 DPYQAAAEKQLQARTL-KDGTGIVDNHQFYLATKPYAQKNPKV-------------IQAL 232
Query: 259 MKLILNNKQDRQFVGRTMLRTHPDLLKN 286
++ + + HPD +
Sbjct: 233 IEEVR--------AVGEWSKAHPDEVTK 252
>gi|237802224|ref|ZP_04590685.1| sulfonate ABC transporter periplasmic sulfonate-binding protein
SsuA [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331025081|gb|EGI05137.1| sulfonate ABC transporter periplasmic sulfonate-binding protein
SsuA [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 321
Score = 38.3 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 26/268 (9%), Positives = 68/268 (25%), Gaps = 45/268 (16%)
Query: 23 DSCTPVRFADTGWTDIA---ATTAMTSVILEEILGYKTNIKLLAV-PVTFRSLKNKGIDI 78
+R + + A ++ + E+ G K P L ID
Sbjct: 26 AQAEDLRIGYQKYGTLVLLKAKGSLEKRLAEQ--GVKVQWTEFPGGPQLLEGLNVGSIDF 83
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL 138
+ P A + + E + V +K +
Sbjct: 84 GVTGETP---PVFAQAAGADLLYVAYEPPAPTSEAILVPKDSPITSVKDLKG-------- 132
Query: 139 GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
K + G+ + ++ + + + + + R ++ W
Sbjct: 133 --KKVVLNKGSNVHYLLVKALEDAGLKYTDIQTVFLPP----ADARAAFERGSVDAWVIW 186
Query: 199 EPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEM 258
+P+ ++ + + +G + + + Y K P + +
Sbjct: 187 DPYQAAAEKQLQARTL-RDGTGIVDNHQFYLATKPYAKKNPKV-------------IQAL 232
Query: 259 MKLILNNKQDRQFVGRTMLRTHPDLLKN 286
++ + + HPD +
Sbjct: 233 IEEVR--------AVGEWSKAHPDEVTT 252
>gi|157963905|ref|YP_001503939.1| extracellular solute-binding protein [Shewanella pealeana ATCC
700345]
gi|157848905|gb|ABV89404.1| extracellular solute-binding protein, family 1 [Shewanella
pealeana ATCC 700345]
Length = 270
Score = 38.3 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 14/96 (14%), Positives = 36/96 (37%), Gaps = 9/96 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYKT 57
+ +++ + + F A+ + ++ A T T+ + + +L E GYK
Sbjct: 4 LKRVVGLAVTAALFVGMPAQANE---VIKLATTTSTEN---SGLLKNLLPKFEAESGYKV 57
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP 93
+ + + +D+ M + + KF+
Sbjct: 58 QVIATGTGKALKLARQGDVDVVMTHAPGAEAKFVEE 93
>gi|331649485|ref|ZP_08350571.1| lipoprotein 28 [Escherichia coli M605]
gi|330907985|gb|EGH36504.1| methionine ABC transporter substrate-binding protein [Escherichia
coli AA86]
gi|331041983|gb|EGI14127.1| lipoprotein 28 [Escherichia coli M605]
Length = 272
Score = 38.3 bits (87), Expect = 1.4, Method: Composition-based stats.
Identities = 19/238 (7%), Positives = 54/238 (22%), Gaps = 19/238 (7%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
+ + ++ + + + +E G + + + N
Sbjct: 26 QSSSDEKHIKVGVINGAEQDV-AEVAKKVAKEKYGLDVELVGFSGSLLPNDATN---HGE 81
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
+ F+ + KLVA G++ IK+ I +
Sbjct: 82 LDANVFQHRPFLEQDNQAHGYKLVAV-----GNTFVFPMAGYSKKIKTVAQIKEGATVAI 136
Query: 140 AKIYGIEPGNEGNQRILDMI---NNNKFSLKGFRLIEASELASFSQIRRD-----QRNNI 191
+ +I + + ++ +
Sbjct: 137 PNDPTNLGRALLLLQKEKLITLKEGKGLLPTALDITDNPRHLQIMELEGAQLPRVLDDPK 196
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
V + + + + I V +V + N+ L++ +
Sbjct: 197 VDVAIISTTY--IQQTGLSPVNDSVFIEDKSSPYVNILVAREDNKNAENVKEFLQSYQ 252
>gi|26246730|ref|NP_752770.1| molybdate transporter periplasmic protein [Escherichia coli CFT073]
gi|91209792|ref|YP_539778.1| molybdate transporter periplasmic protein [Escherichia coli UTI89]
gi|110640965|ref|YP_668693.1| molybdate transporter periplasmic protein [Escherichia coli 536]
gi|117622946|ref|YP_851859.1| molybdate transporter periplasmic protein [Escherichia coli APEC
O1]
gi|170683313|ref|YP_001742866.1| molybdate transporter periplasmic protein [Escherichia coli
SMS-3-5]
gi|191174199|ref|ZP_03035711.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli F11]
gi|218557669|ref|YP_002390582.1| molybdate transporter periplasmic protein [Escherichia coli S88]
gi|218688548|ref|YP_002396760.1| molybdate transporter periplasmic protein [Escherichia coli ED1a]
gi|227884276|ref|ZP_04002081.1| molybdenum (Mo2+) ABC superfamily ATP binding cassette transporter,
binding protein [Escherichia coli 83972]
gi|237707280|ref|ZP_04537761.1| molybdate-binding periplasmic protein [Escherichia sp. 3_2_53FAA]
gi|300939794|ref|ZP_07154432.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli MS 21-1]
gi|300992229|ref|ZP_07179838.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli MS 200-1]
gi|300993237|ref|ZP_07180284.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli MS 45-1]
gi|301051322|ref|ZP_07198147.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli MS 185-1]
gi|306812837|ref|ZP_07447030.1| molybdate transporter periplasmic protein [Escherichia coli NC101]
gi|331645907|ref|ZP_08347010.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli M605]
gi|331656775|ref|ZP_08357737.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli TA206]
gi|26107129|gb|AAN79313.1|AE016757_217 Molybdate-binding periplasmic protein precursor [Escherichia coli
CFT073]
gi|91071366|gb|ABE06247.1| molybdate-binding periplasmic protein precursor [Escherichia coli
UTI89]
gi|110342557|gb|ABG68794.1| molybdate-binding periplasmic protein precursor [Escherichia coli
536]
gi|115512070|gb|ABJ00145.1| molybdate-binding periplasmic protein precursor [Escherichia coli
APEC O1]
gi|170521031|gb|ACB19209.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli SMS-3-5]
gi|190905544|gb|EDV65171.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli F11]
gi|218364438|emb|CAR02118.1| molybdate transporter subunit ; periplasmic-binding component of
ABC superfamily [Escherichia coli S88]
gi|218426112|emb|CAR06930.1| molybdate transporter subunit ; periplasmic-binding component of
ABC superfamily [Escherichia coli ED1a]
gi|222032492|emb|CAP75231.1| Molybdate-binding periplasmic protein [Escherichia coli LF82]
gi|226898490|gb|EEH84749.1| molybdate-binding periplasmic protein [Escherichia sp. 3_2_53FAA]
gi|227839028|gb|EEJ49494.1| molybdenum (Mo2+) ABC superfamily ATP binding cassette transporter,
binding protein [Escherichia coli 83972]
gi|281177899|dbj|BAI54229.1| molybdate ABC transporter substrate binding component [Escherichia
coli SE15]
gi|294492980|gb|ADE91736.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli IHE3034]
gi|300297029|gb|EFJ53414.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli MS 185-1]
gi|300305392|gb|EFJ59912.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli MS 200-1]
gi|300406645|gb|EFJ90183.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli MS 45-1]
gi|300455326|gb|EFK18819.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli MS 21-1]
gi|305853600|gb|EFM54039.1| molybdate transporter periplasmic protein [Escherichia coli NC101]
gi|307552607|gb|ADN45382.1| molybdate-binding periplasmic protein precursor [Escherichia coli
ABU 83972]
gi|307627829|gb|ADN72133.1| molybdate transporter periplasmic protein [Escherichia coli UM146]
gi|312945280|gb|ADR26107.1| molybdate transporter periplasmic protein [Escherichia coli O83:H1
str. NRG 857C]
gi|315287214|gb|EFU46626.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli MS 110-3]
gi|315292619|gb|EFU51971.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli MS 153-1]
gi|315299308|gb|EFU58560.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli MS 16-3]
gi|320196743|gb|EFW71366.1| Molybdenum ABC transporter, periplasmic molybdenum-binding protein
ModA [Escherichia coli WV_060327]
gi|323191101|gb|EFZ76366.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli RN587/1]
gi|323953575|gb|EGB49441.1| molybdate ABC transporter [Escherichia coli H252]
gi|323958301|gb|EGB54009.1| molybdate ABC transporter [Escherichia coli H263]
gi|324009652|gb|EGB78871.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli MS 57-2]
gi|324011093|gb|EGB80312.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli MS 60-1]
gi|330910507|gb|EGH39017.1| molybdenum ABC transporter, periplasmic molybdenum-binding protein
ModA [Escherichia coli AA86]
gi|331044659|gb|EGI16786.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli M605]
gi|331055023|gb|EGI27032.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli TA206]
Length = 257
Score = 38.3 bits (87), Expect = 1.4, Method: Composition-based stats.
Identities = 26/264 (9%), Positives = 64/264 (24%), Gaps = 18/264 (6%)
Query: 1 MYKILAVCLFLTTFSISYARDA-DSCTPVRFADTGWTDIAATTAM--TSVILEEILGYKT 57
M + S + A +A + + + T AM + ++ G
Sbjct: 1 MARKWLNLFTGAALSFAVAGNALADEGKITV----FAAASLTNAMQDIATQYKKEKGVDV 56
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+ R ++ + + +K++ +++ +I + ++ V
Sbjct: 57 VSSFASSSTLARQIEAGAP---ADLFISADQKWMDYAVDKKAIDTASRQTLLGNSLVVVA 113
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
+ + L + I K + +
Sbjct: 114 PKASEQKDFTIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPA 173
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV------VR 231
N + + + + S E+ E V V
Sbjct: 174 EDVRGALALVERNEAPLGIVYGSDAVASKGVKVVATFPEDSHKKVEYPVAVVEGHNNATV 233
Query: 232 SDYLD--KCPNISRLLKNIKFSVA 253
+ D K P + + K F+
Sbjct: 234 KAFYDYLKGPQAAEIFKRYGFTTK 257
>gi|254437507|ref|ZP_05051001.1| hypothetical protein OA307_2377 [Octadecabacter antarcticus 307]
gi|198252953|gb|EDY77267.1| hypothetical protein OA307_2377 [Octadecabacter antarcticus 307]
Length = 333
Score = 38.3 bits (87), Expect = 1.4, Method: Composition-based stats.
Identities = 30/284 (10%), Positives = 79/284 (27%), Gaps = 26/284 (9%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADT-GWTDIAATTAMTSVILEEILGYKTNIK 60
K + ++S + W + EE LG + N
Sbjct: 3 KKTTGAIVLSAIAALSGTTAIADGHSITVGYFLEWPMPFQFAKVNGTY-EEALGMEVNWV 61
Query: 61 LLAVPVTFR-SLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
++ + + + + P F+ ++++ + A V
Sbjct: 62 SFDTGTAMSAAMASGDVQLSVSQGVP---PFVVATSAGQDLQMLDVAVSYADNDNCVVRS 118
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+ S D+A + G + L +++ + +++ S
Sbjct: 119 DLEITAMSAADLA-------GSKVAVPLGTAAHYGFLRQMDHFGVDVASLDVVDMSPPDG 171
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG--EASVYTVVRSDYLDK 237
+ + W + + L G+E + G V + + +
Sbjct: 172 AA----ALAQGAVDMACGWGGSLRRMKESGNTLLTGDEKTELGILVFDVTSAPTAWVAEN 227
Query: 238 CPNISRLL-----KNIKFS-VALENEMMKLILNN-KQDRQFVGR 274
+++ L N +++ + +EM+ +I + D
Sbjct: 228 EVTVAKFLAVTAEANAQWNAGDMMDEMLPVIAQDAGMDVDATAE 271
>gi|94989745|ref|YP_597845.1| amino acid ABC transporter permease [Streptococcus pyogenes
MGAS10270]
gi|94543253|gb|ABF33301.1| ABC transporter amino acid-binding protein / Amino acid ABC
transporter permease protein [Streptococcus pyogenes
MGAS10270]
Length = 528
Score = 38.3 bits (87), Expect = 1.4, Method: Composition-based stats.
Identities = 30/291 (10%), Positives = 68/291 (23%), Gaps = 27/291 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFAD------TGWTDIAATTAMTSVILEE--- 51
M K++ CL A + +R WT A+ +V +E
Sbjct: 7 MKKLILSCLVALALLFGGMSRAQANQYLRVGMEAAYAPFNWTQDDASNG--AVPIEGTSQ 64
Query: 52 -ILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGA 110
GY + + L + G I S N
Sbjct: 65 YANGYDVQVAKKVAKAMNKELLV-VKTSWTGLIPALTSGKIDMIAAGMSPTKERRNEISF 123
Query: 111 KYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
+ + A K+ + G + +
Sbjct: 124 SNSYYTSQPVLVVTANGKYADATSLKDFSGAKVTAQQGVWHVNLLTQLKGAK--LQTPMG 181
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
A S + + P + + + + E+ V
Sbjct: 182 DFSQMRQALTSGVIDAYISERPEAMTAEAADSRLKTITLK------KGFAVAESDAAIAV 235
Query: 231 -RSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNK---QDRQFVGRTML 277
D+ ++++L+ + + +M ++ + + + + L
Sbjct: 236 GMKKNDDRMATVNQVLEGFSQTDRM--ALMDDMVTKQPVEKKAEDAKASFL 284
>gi|307243265|ref|ZP_07525436.1| NLPA lipoprotein [Peptostreptococcus stomatis DSM 17678]
gi|306493393|gb|EFM65375.1| NLPA lipoprotein [Peptostreptococcus stomatis DSM 17678]
Length = 274
Score = 38.3 bits (87), Expect = 1.4, Method: Composition-based stats.
Identities = 15/114 (13%), Positives = 30/114 (26%), Gaps = 14/114 (12%)
Query: 2 YKILAVCLFLTTFSISYARDAD----------SCTPVRFADTGWTDIAATTAMTSVILEE 51
K L + A A+ + T + ILE+
Sbjct: 4 KKFLTLAAVAVLSLGLVACGANKEADKGGSSGDDKTIVVGATPNPHAQILNEVVKPILEK 63
Query: 52 ILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAE 105
GYK ++K+ + + + Y ++ Y + +V
Sbjct: 64 E-GYKLDVKVFND---YVLPNKGLTEKSLDANYFQHVPYLDEYNAKNKTDIVYT 113
>gi|326317134|ref|YP_004234806.1| extracellular solute-binding protein [Acidovorax avenae subsp.
avenae ATCC 19860]
gi|323373970|gb|ADX46239.1| extracellular solute-binding protein, family 3 [Acidovorax avenae
subsp. avenae ATCC 19860]
Length = 321
Score = 38.3 bits (87), Expect = 1.4, Method: Composition-based stats.
Identities = 31/274 (11%), Positives = 70/274 (25%), Gaps = 25/274 (9%)
Query: 7 VCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPV 66
+ ++ A A + +GWT A T + + G +K++
Sbjct: 12 IAAAAGMVGLAMAAQAQETK-IALGMSGWTGFAPLTLADKAGIFKKNGLDVELKMIPQKD 70
Query: 67 TFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIK 126
+L +K I +++ + +AV +
Sbjct: 71 RHLALASKAIQ---CAATTVETHVAWNTNGVPIVQIFQMDKSYGADGIAVRNDVKGFADL 127
Query: 127 SYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRD 186
+ +A G P M++ N +LK + + +
Sbjct: 128 KGKTVAVSAP-------GTAPYFGLAW----MLSKNGMTLKDVKTVSLEPQP----AAQA 172
Query: 187 QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLK 246
+ +++EP+ N + ++L P ++ L
Sbjct: 173 FVSGQNDAAMTYEPYLSTIRANPQAGRILATTIDYPMVMDTVGCAPEWLKANPKAAQALT 232
Query: 247 NIKFSVALENEMMKLILNN------KQDRQFVGR 274
F + N KQ + +
Sbjct: 233 QSYFDALEMIKADPAKANEIMGAAVKQTGEAFAK 266
>gi|13475578|ref|NP_107142.1| hypothetical protein mlr6684 [Mesorhizobium loti MAFF303099]
gi|14026330|dbj|BAB52928.1| mlr6684 [Mesorhizobium loti MAFF303099]
Length = 259
Score = 38.3 bits (87), Expect = 1.4, Method: Composition-based stats.
Identities = 25/230 (10%), Positives = 54/230 (23%), Gaps = 8/230 (3%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M ++A + A + + D ++ + ILE+ GY
Sbjct: 1 MKPLIAGLALAGMAFATMASAQSDKPTIVLVHGAFADASSWNGVV-PILEKD-GYPV--- 55
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ + + + I A+ K ++ V
Sbjct: 56 VAVANPLRSVKADGDYVRSFLNTIKTPIVLVGHSYGGMVISQAADGKANVKALVYVAGFA 115
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
G + K+ L +P + +KF +
Sbjct: 116 PEAGESAGALDTKFPGALLGPDTLAQPVPLLAGGNDLYVRQDKFHEAFAPDLPEDAARLA 175
Query: 181 SQIRRDQRN---NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
+ +R + PA +W+ P + F +
Sbjct: 176 AATQRPITDIAFGEPATTSAWKTIPSWFIYGDGDTAIPPKAQAFMAERAH 225
>gi|293409141|ref|ZP_06652717.1| molybdate ABC transporter [Escherichia coli B354]
gi|331672275|ref|ZP_08373066.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli TA280]
gi|291469609|gb|EFF12093.1| molybdate ABC transporter [Escherichia coli B354]
gi|331070470|gb|EGI41834.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli TA280]
Length = 257
Score = 38.3 bits (87), Expect = 1.4, Method: Composition-based stats.
Identities = 26/264 (9%), Positives = 63/264 (23%), Gaps = 18/264 (6%)
Query: 1 MYKILAVCLFLTTFSISYARDA-DSCTPVRFADTGWTDIAATTAM--TSVILEEILGYKT 57
M + S + A +A + + + T AM + ++ G
Sbjct: 1 MARKWLNLFAGAALSFAVAGNAVADEGKITV----FAAASLTNAMQDIATQYKKEKGVDV 56
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+ R ++ + + +K++ +++ +I ++ V
Sbjct: 57 VSSFASSSTLARQIEAGAP---ADLFISADQKWMDYAVDKKAIDTATRQTLLGNSLVVVA 113
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
+ + L + I K + +
Sbjct: 114 PKASEQKDFTIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPA 173
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV------VR 231
N + + + + S E+ E V V
Sbjct: 174 EDVRGALALVERNEAPLGIVYGSDAVASKGVKVVATFPEDSHKKVEYPVAVVEGHNNATV 233
Query: 232 SDYLD--KCPNISRLLKNIKFSVA 253
+ D K P + + K F+
Sbjct: 234 KAFYDYLKGPQAAEIFKRYGFTTK 257
>gi|170769024|ref|ZP_02903477.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia albertii TW07627]
gi|170122096|gb|EDS91027.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia albertii TW07627]
Length = 257
Score = 38.3 bits (87), Expect = 1.4, Method: Composition-based stats.
Identities = 27/256 (10%), Positives = 63/256 (24%), Gaps = 14/256 (5%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP 65
+F+++ AD FA T A + + ++ G +
Sbjct: 8 LFAGAALSFTVAGNALADEGKITVFAAASLT--NAMQDIATQY-KKEKGVDVVSSFASSS 64
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
R ++ + + +K++ +++ I ++ V A
Sbjct: 65 TLARQIEAGAP---ADLFISADQKWMDYAVDKKGIDTTTRQTLLGNSLVVVAPKTSAQKD 121
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
+ + + L + I K + +
Sbjct: 122 FTIDNKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPAEDVRGALA 181
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV------VRSDYLD--K 237
N + + + + S E+ E V V + D K
Sbjct: 182 LVERNEAPLGIVYGSDAVASKGVKVVATFPEDSHKKVEYPVAVVEGHNNATVKAFYDYLK 241
Query: 238 CPNISRLLKNIKFSVA 253
P + + K F+
Sbjct: 242 GPQAAEIFKRYGFTTK 257
>gi|26250403|ref|NP_756443.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli CFT073]
gi|91213187|ref|YP_543173.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli UTI89]
gi|110644008|ref|YP_671738.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli 536]
gi|117625941|ref|YP_859264.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli APEC O1]
gi|191170472|ref|ZP_03032025.1| lipoprotein NlpA [Escherichia coli F11]
gi|218560741|ref|YP_002393654.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli S88]
gi|218691952|ref|YP_002400164.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli ED1a]
gi|227883882|ref|ZP_04001687.1| ABC superfamily ATP binding cassette transporter, binding protein
[Escherichia coli 83972]
gi|237703464|ref|ZP_04533945.1| lipoprotein-28 [Escherichia sp. 3_2_53FAA]
gi|300984854|ref|ZP_07177142.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 45-1]
gi|300988779|ref|ZP_07178821.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 200-1]
gi|301047475|ref|ZP_07194552.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 185-1]
gi|306815982|ref|ZP_07450120.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli NC101]
gi|331660006|ref|ZP_08360944.1| lipoprotein 28 [Escherichia coli TA206]
gi|26110833|gb|AAN83017.1|AE016769_132 Lipoprotein-28 precursor [Escherichia coli CFT073]
gi|57545675|gb|AAW51766.1| NlpA [Escherichia coli]
gi|91074761|gb|ABE09642.1| lipoprotein-28 precursor [Escherichia coli UTI89]
gi|110345600|gb|ABG71837.1| putative lipoprotein [Escherichia coli 536]
gi|115515065|gb|ABJ03140.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli APEC O1]
gi|190909280|gb|EDV68866.1| lipoprotein NlpA [Escherichia coli F11]
gi|218367510|emb|CAR05292.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli S88]
gi|218429516|emb|CAR10339.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli ED1a]
gi|222035378|emb|CAP78123.1| Lipoprotein 28 [Escherichia coli LF82]
gi|226902728|gb|EEH88987.1| lipoprotein-28 [Escherichia sp. 3_2_53FAA]
gi|227839160|gb|EEJ49626.1| ABC superfamily ATP binding cassette transporter, binding protein
[Escherichia coli 83972]
gi|281180715|dbj|BAI57045.1| putative lipoprotein [Escherichia coli SE15]
gi|294492615|gb|ADE91371.1| lipoprotein NlpA [Escherichia coli IHE3034]
gi|300300590|gb|EFJ56975.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 185-1]
gi|300305847|gb|EFJ60367.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 200-1]
gi|300408283|gb|EFJ91821.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 45-1]
gi|305850378|gb|EFM50835.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli NC101]
gi|307555804|gb|ADN48579.1| lipoprotein-28 precursor [Escherichia coli ABU 83972]
gi|307628742|gb|ADN73046.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli UM146]
gi|312948231|gb|ADR29058.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli O83:H1 str.
NRG 857C]
gi|315285401|gb|EFU44846.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 110-3]
gi|315292905|gb|EFU52257.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 153-1]
gi|315296951|gb|EFU56231.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 16-3]
gi|323949907|gb|EGB45791.1| YaeC family lipoprotein [Escherichia coli H252]
gi|323955042|gb|EGB50820.1| YaeC family lipoprotein [Escherichia coli H263]
gi|324008093|gb|EGB77312.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 57-2]
gi|324012677|gb|EGB81896.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 60-1]
gi|331053221|gb|EGI25254.1| lipoprotein 28 [Escherichia coli TA206]
Length = 272
Score = 38.3 bits (87), Expect = 1.4, Method: Composition-based stats.
Identities = 20/238 (8%), Positives = 55/238 (23%), Gaps = 19/238 (7%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
+ + ++ + + + +E G + + + N
Sbjct: 26 QSSSDEKHIKVGVINGAEQDV-AEVAKKVAKEKYGLDVELVGFSGSLLPNDATN---HGE 81
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
+ F+ + KLVA G++ IK+ I +
Sbjct: 82 LDANVFQHRPFLEQDNQAHGYKLVAV-----GNTFVFPMAGYSKKIKTVAQIKEGATVAI 136
Query: 140 AKIYGIEPGNEGNQRILDMI---NNNKFSLKGFRLIEASELASFSQIRRD-----QRNNI 191
+ +I + + ++ +
Sbjct: 137 PNDPTNLGRALLLLQKEKLITLKEGKGLLPTALDITDNPRHLQIMELEGAQLPRVLDDPK 196
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
V + + + L+ E V +V + N+ L++ +
Sbjct: 197 VDVAIISTTYIQQTGLSPVNDSVFIEDKNSP--YVNILVAREDNKNAENVKEFLQSYQ 252
>gi|332523619|ref|ZP_08399871.1| ABC transporter, solute-binding protein [Streptococcus porcinus
str. Jelinkova 176]
gi|332314883|gb|EGJ27868.1| ABC transporter, solute-binding protein [Streptococcus porcinus
str. Jelinkova 176]
Length = 344
Score = 38.3 bits (87), Expect = 1.4, Method: Composition-based stats.
Identities = 34/273 (12%), Positives = 78/273 (28%), Gaps = 41/273 (15%)
Query: 2 YKILAVCLFLTTFSISYAR--------DADSCTPVRFADTGWTDIAATTAMTSVILEEIL 53
K L V + A +A + ++ + + EE
Sbjct: 3 KKSLTVLMASVALIGLSACGSKAENKKEAKESDKLVVYSPN-SEGLINATIPAF--EEKY 59
Query: 54 GYKTNIKLLAVPVTFRSLKNK------GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL 107
G K + F+ ++++ + Y + + V +
Sbjct: 60 GIKVELIQAGTGELFKKVESEANKPVADVVFGGSYTQYAQHPELFEKYTAKDNDKVIRDY 119
Query: 108 QGAKYM-----------LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRIL 156
Q + D+ + IK Y+D+ + + + ++
Sbjct: 120 QNTTGYSTPYTLDGSVLIVNPDLTKGMKIKGYKDLLNPELKGKIATADPANSSSAFAQLT 179
Query: 157 DMINNNKFSLKG---------FRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDL 207
+M+ K F L++ +S S + + + AV LS+E + +
Sbjct: 180 NMLKATGGYDKNTSWDYVKDLFTLVDGKINSSSSNVYKSVADGEMAVGLSYE----DPSV 235
Query: 208 NIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ ++ E SV+ + + PN
Sbjct: 236 KLLNDGANVKVIYPEEGSVFLPASAAIIKNAPN 268
>gi|269839253|ref|YP_003323945.1| aliphatic sulfonates family ABC transporter periplasmic
ligand-binding protein [Thermobaculum terrenum ATCC
BAA-798]
gi|269790983|gb|ACZ43123.1| aliphatic sulfonates family ABC transporter, periplasmic
ligand-binding protein [Thermobaculum terrenum ATCC
BAA-798]
Length = 327
Score = 38.3 bits (87), Expect = 1.4, Method: Composition-based stats.
Identities = 32/313 (10%), Positives = 67/313 (21%), Gaps = 59/313 (18%)
Query: 1 MYKI----LAVCLFLTTFSISYARDA--------DSCTPVRFADTGWTDIAA----TTAM 44
M +I L L L A VR + +
Sbjct: 1 MSRIIYSWLLFPLILGLVLAGCGESALSSDSGSSGGGKVVRIGYQKGSSSLLVLKSQGTL 60
Query: 45 TSVILEEILGYKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLV 103
+ + LGY P +L ID P A + +
Sbjct: 61 EKDL--KQLGYTLQWTEFQAGPPLLEALGAGSIDFGTTGAPP---PIFAQAAGADLVYVA 115
Query: 104 AENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK 163
A + V K +L K ++ G+ + ++ +
Sbjct: 116 ATKPSPKTQAILVPKT----------SDIKSVADLKGKKVAVQKGSSAHALLVQALEKAG 165
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+ + + + + + W+P+ + S
Sbjct: 166 LKYSDIQPVYLAPSDAKA----AFEGGSVDAWSIWDPYYAMEVAETGARVIADGESAGLA 221
Query: 224 ASVYTVVRSDYLDKCPNISR-LLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPD 282
+ + + + + +LK + H D
Sbjct: 222 NRSFYLASRKFATEHKDAVDAILKAL----------------------EGAEGWSEAHRD 259
Query: 283 LLKNWLIGVTTFD 295
+ + T D
Sbjct: 260 EVAKLVSSQTGVD 272
>gi|332855714|ref|ZP_08436010.1| ABC transporter, substrate-binding protein, aliphatic sulfonates
family [Acinetobacter baumannii 6013150]
gi|332866686|ref|ZP_08437148.1| ABC transporter, substrate-binding protein, aliphatic sulfonates
family [Acinetobacter baumannii 6013113]
gi|332727300|gb|EGJ58740.1| ABC transporter, substrate-binding protein, aliphatic sulfonates
family [Acinetobacter baumannii 6013150]
gi|332734455|gb|EGJ65570.1| ABC transporter, substrate-binding protein, aliphatic sulfonates
family [Acinetobacter baumannii 6013113]
Length = 327
Score = 38.3 bits (87), Expect = 1.5, Method: Composition-based stats.
Identities = 28/276 (10%), Positives = 76/276 (27%), Gaps = 31/276 (11%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSV--ILEEIL-GYKTN 58
+ AV + T + + +R + + A+ + E+ K
Sbjct: 17 KRFSAVAVLGFTIAAPAWAIDPTVKELRIG---FQKSSINFAIAKQQKLFEQEFPNAKIT 73
Query: 59 IKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
P +L +D+ + P A + + E + + V
Sbjct: 74 WNEFPAGPQILEALAVGSLDVGVTGDTP---PVYAQAAGKPLYYIAYEAAKPLASAILVP 130
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
K K+L K ++ G+ + ++ + I +
Sbjct: 131 K----------NSQLKQLKDLKGKRIALQKGSSSHYLLVQAVRKVGLKWSDITPIWLTP- 179
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDK 237
+ R + + W+P+ ++ L + + + +++ +
Sbjct: 180 ---ADARAAFQKGAVDAWAIWDPYYASAQLEDQARVLASGKGLSPNYT-FYLAAPNFVKQ 235
Query: 238 CPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVG 273
P L + N+ K + +++ +
Sbjct: 236 YPKAVPGL------IKQINQADKWVQSHQAETASAV 265
>gi|194435670|ref|ZP_03067773.1| lipoprotein NlpA [Escherichia coli 101-1]
gi|253771478|ref|YP_003034309.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254163613|ref|YP_003046721.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli B str.
REL606]
gi|297519514|ref|ZP_06937900.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli OP50]
gi|300932282|ref|ZP_07147554.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 187-1]
gi|194425213|gb|EDX41197.1| lipoprotein NlpA [Escherichia coli 101-1]
gi|242379199|emb|CAQ34003.1| lipoprotein-28 [Escherichia coli BL21(DE3)]
gi|253322522|gb|ACT27124.1| lipoprotein, YaeC family [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|253975514|gb|ACT41185.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli B str.
REL606]
gi|253979670|gb|ACT45340.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli BL21(DE3)]
gi|300459969|gb|EFK23462.1| D-methionine-binding lipoprotein MetQ [Escherichia coli MS 187-1]
gi|323959726|gb|EGB55376.1| YaeC family lipoprotein [Escherichia coli H489]
gi|323971138|gb|EGB66384.1| YaeC family lipoprotein [Escherichia coli TA007]
Length = 272
Score = 38.3 bits (87), Expect = 1.5, Method: Composition-based stats.
Identities = 20/238 (8%), Positives = 55/238 (23%), Gaps = 19/238 (7%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
+ ++ + + + +E G + + + N
Sbjct: 26 QSISDAKHIKVGVINGAEQDV-AEVAKKVAKEKYGLDVELVGFSGSLLPNDATN---HGE 81
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
+ F+ + KLVA G++ IK+ I +
Sbjct: 82 LDANVFQHRPFLEQDNQAHGYKLVAV-----GNTFVFPMAGYSKKIKTVAQIKEGATVAI 136
Query: 140 AKIYGIEPGNEGNQRILDMI---NNNKFSLKGFRLIEASELASFSQIRRD-----QRNNI 191
+ +I + + ++ +
Sbjct: 137 PNDPTNLGRALLLLQKEKLITLKEGKGLLPTALDITDNPRHLQIMELEGAQLPRVLDDPK 196
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
V + + + L+ + E V +V + N+ L++ +
Sbjct: 197 VDVAIISTTYIQQTGLSPVHDSVFIEDKNSP--YVNILVAREDNKNAENVKEFLQSYQ 252
>gi|260467173|ref|ZP_05813350.1| taurine ABC transporter, periplasmic binding protein [Mesorhizobium
opportunistum WSM2075]
gi|259029026|gb|EEW30325.1| taurine ABC transporter, periplasmic binding protein [Mesorhizobium
opportunistum WSM2075]
Length = 337
Score = 38.3 bits (87), Expect = 1.5, Method: Composition-based stats.
Identities = 10/69 (14%), Positives = 24/69 (34%), Gaps = 1/69 (1%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
+I W+P + + +++ +G + +VR+D+ +K P
Sbjct: 169 EIAAAFARGDIDAAYVWDPALGQIKTSGKVVVDSSQVAAWGAPTFDAWIVRTDFAEKNPE 228
Query: 241 ISRLLKNIK 249
R +
Sbjct: 229 AVRDFVKVT 237
>gi|306828018|ref|ZP_07461284.1| amino acid ABC superfamily ATP binding cassette transporter,
membrane protein [Streptococcus pyogenes ATCC 10782]
gi|304429799|gb|EFM32842.1| amino acid ABC superfamily ATP binding cassette transporter,
membrane protein [Streptococcus pyogenes ATCC 10782]
Length = 522
Score = 38.3 bits (87), Expect = 1.5, Method: Composition-based stats.
Identities = 30/291 (10%), Positives = 68/291 (23%), Gaps = 27/291 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFAD------TGWTDIAATTAMTSVILEE--- 51
M K++ CL A + +R WT A+ +V +E
Sbjct: 1 MKKLILSCLVALALLFGGMSRAQANQYLRVGMEAAYAPFNWTQDDASNG--AVPIEGTSQ 58
Query: 52 -ILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGA 110
GY + + L + G I S N
Sbjct: 59 YANGYDVQVAKKIAKAMNKELLV-VKTSWTGLIPALTSGKIDMIAAGMSPTKERRNEISF 117
Query: 111 KYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
+ + A K+ + G + +
Sbjct: 118 SNSYYTSQPVLVVTANGKYADATSLKDFSGAKVTAQQGVWHVNLLTQLKGAK--LQTPMG 175
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
A S + + P + + + + E+ V
Sbjct: 176 DFSQMRQALTSGVIDAYISERPEAMTAEAADSRLKMITLK------KGFAVAESDAAIAV 229
Query: 231 -RSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNK---QDRQFVGRTML 277
D+ ++++L+ + + +M ++ + + + + L
Sbjct: 230 GMKKNDDRMATVNQVLEGFSQTDRM--ALMDDMVTKQPVEKKAEDAKASFL 278
>gi|257053300|ref|YP_003131133.1| extracellular solute-binding protein family 5 [Halorhabdus
utahensis DSM 12940]
gi|256692063|gb|ACV12400.1| extracellular solute-binding protein family 5 [Halorhabdus
utahensis DSM 12940]
Length = 735
Score = 38.3 bits (87), Expect = 1.5, Method: Composition-based stats.
Identities = 25/185 (13%), Positives = 52/185 (28%), Gaps = 2/185 (1%)
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
I+ VTFR + D+ G+W P PY+ + ++
Sbjct: 429 IEADVREVTFRDIFAGDFDVVSGWWLPGSIDSTHPYVAYRFGFGMGMVQPDLLEYPGLDS 488
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ I ++ + E + + L L + +
Sbjct: 489 TVTVPADGNNGSIDVTPQDELEALATTVDRGEAESIVQRLAKVYNADLPMLPLYRSQYTS 548
Query: 179 S-FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLD 236
+ P ++W PH + ++H E + +V T +D
Sbjct: 549 FIDTSAVDAPAEGSPKFQITWPPHWLVRTGDLHSPGWAENEASTPTETVTNTPTATDTER 608
Query: 237 KCPNI 241
+ P+
Sbjct: 609 ETPSA 613
>gi|218699128|ref|YP_002406757.1| molybdate transporter periplasmic protein [Escherichia coli IAI39]
gi|218369114|emb|CAR16868.1| molybdate transporter subunit ; periplasmic-binding component of
ABC superfamily [Escherichia coli IAI39]
Length = 257
Score = 38.3 bits (87), Expect = 1.5, Method: Composition-based stats.
Identities = 26/264 (9%), Positives = 64/264 (24%), Gaps = 18/264 (6%)
Query: 1 MYKILAVCLFLTTFSISYARDA-DSCTPVRFADTGWTDIAATTAM--TSVILEEILGYKT 57
M + S + A +A + + + T AM + ++ G
Sbjct: 1 MARKWLNLFTGAALSFAVAGNALADEGKITV----FAAASLTNAMQDIATQYKKEKGVDV 56
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+ R ++ + + +K++ +++ +I + ++ V
Sbjct: 57 VSSFASSSTLARQIEAGAP---ADLFISADQKWMDYAVDKKAIDTASRQTLLGNSLVVVA 113
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
+ + L + I K + +
Sbjct: 114 PKVSEQKDFTIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPA 173
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV------VR 231
N + + + + S E+ E V V
Sbjct: 174 EDVRGALALVERNEAPLGIVYGSDAVASKGVKVVATFPEDSHKKVEYPVAVVEGHNNATV 233
Query: 232 SDYLD--KCPNISRLLKNIKFSVA 253
+ D K P + + K F+
Sbjct: 234 KAFYDYLKGPQAAEIFKRYGFTTK 257
>gi|237730793|ref|ZP_04561274.1| outer membrane protein X [Citrobacter sp. 30_2]
gi|226906332|gb|EEH92250.1| outer membrane protein X [Citrobacter sp. 30_2]
Length = 171
Score = 38.3 bits (87), Expect = 1.5, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 29/130 (22%), Gaps = 2/130 (1%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M KI + + S + + V A M L Y+ +
Sbjct: 1 MKKIACLSALAAVLAFSAGTAVAATSTVTGGYAQSDAQGAANKMNGFNL--KYRYEQDNN 58
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
L V +F + D Y A + + G Y N
Sbjct: 59 PLGVIGSFTYTEKDRTDASGDYNKTQYYGITAGPAYRLNDWASIYGVVGVGYGKFQNVES 118
Query: 121 FALGIKSYQD 130
+
Sbjct: 119 STYNHSTSDY 128
>gi|21909739|ref|NP_664007.1| putative glutamine-binding periplasmic protein [Streptococcus
pyogenes MGAS315]
gi|28895121|ref|NP_801471.1| glutamine-binding periplasmic protein [Streptococcus pyogenes
SSI-1]
gi|21903923|gb|AAM78810.1| putative glutamine-binding periplasmic protein [Streptococcus
pyogenes MGAS315]
gi|28810366|dbj|BAC63304.1| putative glutamine-binding periplasmic protein [Streptococcus
pyogenes SSI-1]
Length = 522
Score = 38.3 bits (87), Expect = 1.5, Method: Composition-based stats.
Identities = 30/291 (10%), Positives = 68/291 (23%), Gaps = 27/291 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFAD------TGWTDIAATTAMTSVILEE--- 51
M K++ CL A + +R WT A+ +V +E
Sbjct: 1 MKKLILSCLVALALLFGGMSRAQANQYLRVGMEAAYAPFNWTQDDASNG--AVPIEGTSQ 58
Query: 52 -ILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGA 110
GY + + L + G I S N
Sbjct: 59 YANGYDVQVAKKIAKAMNKELLV-VKTSWTGLIPALTSGKIDMIAAGMSPTKERRNEISF 117
Query: 111 KYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
+ + A K+ + G + +
Sbjct: 118 SNSYYTSQPVLVVTANGKYADATSLKDFSGAKVTAQQGVWHVNLLTQLKGAK--LQTPMG 175
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
A S + + P + + + + E+ V
Sbjct: 176 DFSQMRQALTSGVIDAYISERPEAMTAEAADSRLKMITLK------KGFAVAESDAAIAV 229
Query: 231 -RSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNK---QDRQFVGRTML 277
D+ ++++L+ + + +M ++ + + + + L
Sbjct: 230 GMKKNDDRMATVNQVLEGFSQTDRM--ALMDDMVTKQPVEKKAEDAKASFL 278
>gi|78485432|ref|YP_391357.1| ABC-type nitrate/sulfonate/bicarbonate transport systems
periplasmic components-like [Thiomicrospira crunogena
XCL-2]
gi|78363718|gb|ABB41683.1| ABC transporter substrate-binding protein homolog [Thiomicrospira
crunogena XCL-2]
Length = 329
Score = 38.3 bits (87), Expect = 1.5, Method: Composition-based stats.
Identities = 37/259 (14%), Positives = 77/259 (29%), Gaps = 36/259 (13%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGY--KTNIKLLAV-PVTFRSLKNKGI 76
+ +R + W +L E LGY K IK+L T K
Sbjct: 27 CASKPQQELRISSLLWPGYEPL------VLAEKLGYFQKAPIKILDYLSNTDAIAAFKNH 80
Query: 77 DIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKK 136
+ G + + + I L+ + G +L I+S D+ +
Sbjct: 81 SLEAGAFTLDETLQLLSDGVDIQIVLIMDTSDGGDVIL------ANPDIQSISDLKGHPV 134
Query: 137 ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFL 196
+ + G + + N +L +I + ++ +N +
Sbjct: 135 AVESSAVGA-------YVLQRALELNGLTLDDIDVISTHAMEQ----QQAFKNGEVVAAV 183
Query: 197 SWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALEN 256
+++P+ + + + V VVR+D ++ P + R L
Sbjct: 184 TFDPYRTELIQDGKHSIFNSKSIPNEIIDVL-VVRTDVVENNPKVIRQL---------IQ 233
Query: 257 EMMKLILNNKQDRQFVGRT 275
K + K + +
Sbjct: 234 GWFKALAFQKANPKKAAEY 252
>gi|298290640|ref|YP_003692579.1| phosphonate ABC transporter periplasmic phosphonate binding protein
[Starkeya novella DSM 506]
gi|296927151|gb|ADH87960.1| phosphonate ABC transporter, periplasmic phosphonate binding
protein [Starkeya novella DSM 506]
Length = 333
Score = 38.3 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 27/207 (13%), Positives = 51/207 (24%), Gaps = 18/207 (8%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTA----MTSVILEEILGYK 56
M +ILA L L + A + F A M LE+ +G
Sbjct: 1 MKRILAAGLVLAGLTAPLAAQ--EVKELNFGIISTESSAGLAKSFEPMLKD-LEKAVGVP 57
Query: 57 TNIKLLA-VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
++ K +D+ WY + A G I + G K +
Sbjct: 58 VKAFFAQDYAGVIEGMRFKKVDL---AWYGNKSAMEAVDRAGGEIFVQTTKPDGTKGYYS 114
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN---KFSLKGFRLI 172
+ + + G GN + + R++
Sbjct: 115 LIITNADNNAVNNLKDVVDCSKGLTFGNGDPNSTSGNLVPSYYVFALNKVDPNKCYKRVV 174
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWE 199
++ + N + +
Sbjct: 175 VSNHEGN----ALAVANKQVDIATNNT 197
>gi|298505175|gb|ADI83898.1| succinyl-CoA synthetase, alpha subunit [Geobacter sulfurreducens
KN400]
Length = 291
Score = 38.3 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 8/58 (13%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 242 SRLLKNIKFSVALEN-EMMKLILNNKQDRQFVGRTMLRTHPDL-LKNWLIGVTTFDGQ 297
+ +K +N E + +I + ++ + + +++ GVT G+
Sbjct: 186 MNFIDVLKLFNEDKNTEAVFMIGEIGGTAEEEAAYWIKENMKKPVASFIAGVTAPPGK 243
>gi|312111381|ref|YP_003989697.1| aliphatic sulfonate ABC transporter periplasmic protein
[Geobacillus sp. Y4.1MC1]
gi|311216482|gb|ADP75086.1| aliphatic sulfonates family ABC transporter, periplasmic
ligand-binding protein [Geobacillus sp. Y4.1MC1]
Length = 353
Score = 38.3 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 28/258 (10%), Positives = 67/258 (25%), Gaps = 35/258 (13%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEIL-GYKTN-IKLLAVPVTFRSLKNKGIDIFMG 81
+ +R + +LE+ K N IK + ++ + ID +
Sbjct: 47 APKEIRLGYQVSPNGELLAKALG-LLEKKYPNIKINWIKFDSGRDVNNAMASGSIDFGLV 105
Query: 82 YWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAK 141
P + ++ G L V +K + K +
Sbjct: 106 GTPPGSIGIANKLPYK---VYYLHDMIGESEALVVKKDSGIQSLKDLKG-KKIATTFSST 161
Query: 142 IYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPH 201
+ G ++I + I + + W+P
Sbjct: 162 SHFSLLGALKAEKINPEKDGITLLDMQPP-----------DIYAAWKRDDIDGAYIWQPT 210
Query: 202 PI-NSDLNIHYLPGGEEISGFGEASVYT----VVRSDYLDKCPNISRLLKNIKFSVALEN 256
+ + +++S G + T +V ++ K P I + +
Sbjct: 211 QTKLINEGGRVIVTSKDLSKKG---IVTGEFGIVNKEFARKYPEIVK---------GYIS 258
Query: 257 EMMKLILNNKQDRQFVGR 274
+ K + + + +
Sbjct: 259 VLDKAVHYYRNKPKEAAQ 276
>gi|39996161|ref|NP_952112.1| succinyl-CoA synthase subunit alpha [Geobacter sulfurreducens PCA]
gi|39982926|gb|AAR34385.1| succinyl-CoA synthase, alpha subunit [Geobacter sulfurreducens PCA]
Length = 291
Score = 38.3 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 8/58 (13%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 242 SRLLKNIKFSVALEN-EMMKLILNNKQDRQFVGRTMLRTHPDL-LKNWLIGVTTFDGQ 297
+ +K +N E + +I + ++ + + +++ GVT G+
Sbjct: 186 MNFIDVLKLFNEDKNTEAVFMIGEIGGTAEEEAAYWIKENMKKPVASFIAGVTAPPGK 243
>gi|19745409|ref|NP_606545.1| glutamine-binding periplasmic protein [Streptococcus pyogenes
MGAS8232]
gi|19747518|gb|AAL97044.1| putative glutamine-binding periplasmic protein [Streptococcus
pyogenes MGAS8232]
Length = 522
Score = 38.3 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 30/291 (10%), Positives = 68/291 (23%), Gaps = 27/291 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFAD------TGWTDIAATTAMTSVILEE--- 51
M K++ CL A + +R WT A+ +V +E
Sbjct: 1 MKKLILSCLVALALLFGGMSRAQANQYLRVGMEAAYAPFNWTQDDASNG--AVPIEGTSQ 58
Query: 52 -ILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGA 110
GY + + L + G I S N
Sbjct: 59 YANGYDVQVAKKIAKAMNKELLV-VKTSWTGLIPALTSGKIDMIAAGMSPTKERRNEISF 117
Query: 111 KYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
+ + A K+ + G + +
Sbjct: 118 SNSYYTSQPVLVVTANGKYADATSLKDFSGAKVTAQQGVWHVNLLTQLKGAK--LQTPMG 175
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
A S + + P + + + + E+ V
Sbjct: 176 DFSQMRQALTSGVIDAYISERPEAMTAEAADSRLKMITLK------KGFAVAESDAAIAV 229
Query: 231 -RSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNK---QDRQFVGRTML 277
D+ ++++L+ + + +M ++ + + + + L
Sbjct: 230 GMKKNDDRMATVNQVLEGFSQTDRM--ALMDDMVTKQPVEKKAEDAKASFL 278
>gi|215485778|ref|YP_002328209.1| molybdate transporter periplasmic protein [Escherichia coli O127:H6
str. E2348/69]
gi|312965192|ref|ZP_07779429.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli 2362-75]
gi|215263850|emb|CAS08188.1| molybdate transporter subunit [Escherichia coli O127:H6 str.
E2348/69]
gi|312290283|gb|EFR18166.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli 2362-75]
Length = 257
Score = 38.3 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 26/264 (9%), Positives = 64/264 (24%), Gaps = 18/264 (6%)
Query: 1 MYKILAVCLFLTTFSISYARDA-DSCTPVRFADTGWTDIAATTAM--TSVILEEILGYKT 57
M + S + A +A + + + T AM + ++ G
Sbjct: 1 MARKWLNLFTGAALSFAVAGNALADEGKITV----FAAASLTNAMQDIATQYKKEKGVDV 56
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+ R ++ + + +K++ +++ +I + ++ V
Sbjct: 57 VSSFASSSTLARQIEAGAP---ADLFISADQKWMDYAVDKKAIDTASRQTLLGNSLVVVA 113
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
+ + L + I K + +
Sbjct: 114 PKASEQKDFTIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPA 173
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV------VR 231
N + + + + S E+ E V V
Sbjct: 174 EDVRGALALVERNEAPLGIVYGSDAVASKGVKVVATFPEDPHKKVEYPVAVVEGHNNATV 233
Query: 232 SDYLD--KCPNISRLLKNIKFSVA 253
+ D K P + + K F+
Sbjct: 234 KAFYDYLKGPQAAEIFKRYGFTTK 257
>gi|330828765|ref|YP_004391717.1| molybdate ABC transporter periplasmic-binding protein [Aeromonas
veronii B565]
gi|328803901|gb|AEB49100.1| ABC-type molybdate transporter, periplasmic-binding protein
[Aeromonas veronii B565]
Length = 276
Score = 38.3 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 2/91 (2%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIA-ATTAMTSVILEEILGYKTNIKL 61
K A+ L + A + P+R A T T+ + + + GY +
Sbjct: 8 KRFALSLAASLLIAGAAHADTTKAPIRLATTTSTEQSGLLGWLLPQ-FTKETGYPVQVMA 66
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIA 92
+ + +N D+ M + + +KF+
Sbjct: 67 AGTGQSLKMGENGDADLVMTHAPSAEKKFVD 97
>gi|294782867|ref|ZP_06748193.1| TRAP dicarboxylate transporter DctP subunit [Fusobacterium sp.
1_1_41FAA]
gi|294481508|gb|EFG29283.1| TRAP dicarboxylate transporter DctP subunit [Fusobacterium sp.
1_1_41FAA]
Length = 341
Score = 38.3 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 42/305 (13%), Positives = 89/305 (29%), Gaps = 44/305 (14%)
Query: 28 VRFADTGWTDIAATTAMTSV----ILEEILG--YKTNIKL----LAVPVTFRSLKNKGID 77
++ T + +T + SV ILEE ++ + P +K +
Sbjct: 37 IKIGHTDSSSR--STNIWSVELGKILEEKAPGKFQVEVYPDGQLGDTPDLVAGVKLGTVT 94
Query: 78 IFMG-------------------YWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ Y YP+ E ++ E G ++L E L+ Y
Sbjct: 95 MMFDLSAAITAAAGPESACIDLPYLYPTYEDWVKGTFENGGLELFNEYLKKQGYYCIDMY 154
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ S + +L + I NE N + + N + +I +
Sbjct: 155 YNGMRQVASVKRNYHNSNDLKGQKIRI-AQNELNVDMWQAMGANPTPMSWGEVITSLSQG 213
Query: 179 SFSQIRRDQR-----NNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFG-----EASVYT 228
+ + + + +S I E S++
Sbjct: 214 TIDALDHSLGVFNDFSLHKIAPYITLTNHASSPFPIVCSLDWINSLPEDLRKILEESIHE 273
Query: 229 VVRSDYLDKCPNISRLLKNIKFSVALENEM-MKLILNNKQDRQFVGRTMLRT-HPDLLKN 286
V + ++ N + ++ K A E+ + ++ + V + D++
Sbjct: 274 VAKKQREEERANELKYIERFKSEGATVQELTSDEVKAFQESVKPVYDKWRKKVGDDVVDK 333
Query: 287 WLIGV 291
WL V
Sbjct: 334 WLETV 338
>gi|322835421|ref|YP_004215447.1| short-chain dehydrogenase/reductase SDR [Rahnella sp. Y9602]
gi|321170622|gb|ADW76320.1| short-chain dehydrogenase/reductase SDR [Rahnella sp. Y9602]
Length = 247
Score = 38.3 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 9/69 (13%), Positives = 22/69 (31%), Gaps = 15/69 (21%)
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENE---------------MMKL 261
+ ++T R +++D+CP L +I + + + L
Sbjct: 25 KHFYAAGWQIFTASRQNWVDECPWAEGFLNHIHLDLEDIDSVQKALPMIKERLGGRLDAL 84
Query: 262 ILNNKQDRQ 270
+ N +
Sbjct: 85 VDNAGISPK 93
>gi|187732119|ref|YP_001882376.1| cytoplasmic membrane lipoprotein-28 [Shigella boydii CDC 3083-94]
gi|187429111|gb|ACD08385.1| lipoprotein NlpA [Shigella boydii CDC 3083-94]
Length = 272
Score = 38.3 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 18/238 (7%), Positives = 54/238 (22%), Gaps = 19/238 (7%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
+ + ++ + + + +E G + + + N
Sbjct: 26 QSSSDAKHIKVGVINGAEQDV-AEVAKKVAKEKYGLDVELVGFSGSLLPNDATN---HGE 81
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
+ F+ + K VA G++ I + I +
Sbjct: 82 LDANVFQHRPFLEQDNQAHGYKQVAV-----GNTFVFPMAGYSKKITTVAQIKEGATVAI 136
Query: 140 AKIYGIEPGNEGNQRILDMI---NNNKFSLKGFRLIEASELASFSQIRRD-----QRNNI 191
+ +I + + ++ +
Sbjct: 137 PNDPTNLGRALLLLQKEKLITLKEGKGLLHTALDITDNPRHLQIMELEGAQLPRVLDDPK 196
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
V + + + L+ + E V +V + N+ L++ +
Sbjct: 197 VDVAIISTTYIQQTGLSPVHDSVFIEDKNSP--YVNILVAREDNKNAENVKEFLQSYQ 252
>gi|332768144|gb|EGJ98329.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Shigella flexneri 2930-71]
Length = 250
Score = 38.3 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 26/254 (10%), Positives = 62/254 (24%), Gaps = 14/254 (5%)
Query: 8 CLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVT 67
+F+++ AD FA T A + + ++ G +
Sbjct: 3 AGAALSFAVAGNALADEGKITVFAAASLT--NAMQDIATQY-KKEKGVDVVSSFASSSTL 59
Query: 68 FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKS 127
R ++ + + +K++ +++ +I ++ V +
Sbjct: 60 ARQIEAGAP---ADLFISADQKWMDYAVDKKAIDTATRQTLLGNSLVVVAPKASEQKDFT 116
Query: 128 YQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQ 187
+ L + I K + +
Sbjct: 117 IDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPAEDVRGALALV 176
Query: 188 RNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV------VRSDYLD--KCP 239
N + + + + S E+ E V V + D K P
Sbjct: 177 ERNEAPLGIVYGSDAVASKGVKVVATFPEDSHKKVEYPVAVVEGHNNATVKAFYDYLKGP 236
Query: 240 NISRLLKNIKFSVA 253
+ + K F+
Sbjct: 237 QAAEIFKRYGFTTK 250
>gi|319780585|ref|YP_004140061.1| taurine ABC transporter periplasmic binding protein [Mesorhizobium
ciceri biovar biserrulae WSM1271]
gi|317166473|gb|ADV10011.1| taurine ABC transporter, periplasmic binding protein [Mesorhizobium
ciceri biovar biserrulae WSM1271]
Length = 337
Score = 38.3 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 10/69 (14%), Positives = 23/69 (33%), Gaps = 1/69 (1%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
+I W+P + +++ +G + +VR+D+ +K P
Sbjct: 169 EIAAAFSRGDIDAAYVWDPALGQIKTTGKVVVDSSQVAAWGAPTFDAWIVRTDFAEKNPE 228
Query: 241 ISRLLKNIK 249
R +
Sbjct: 229 AVRDFVKVT 237
>gi|188582842|ref|YP_001926287.1| aliphatic sulfonates family ABC transporter, periplsmic
ligand-binding protein [Methylobacterium populi BJ001]
gi|179346340|gb|ACB81752.1| aliphatic sulfonates family ABC transporter, periplsmic
ligand-binding protein [Methylobacterium populi BJ001]
Length = 319
Score = 38.3 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 37/282 (13%), Positives = 79/282 (28%), Gaps = 41/282 (14%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL 62
+++ L+ S A D+ +R ++A+ S++ E+ +T +K L
Sbjct: 8 RLVLAGFALSLLGRSPAAAEDA--TLRIGYQR------SSALISLLREDAT-LETALKPL 58
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
V V++ + M A + + A +
Sbjct: 59 GVSVSWHEFTSGLP--IMEALNVGRIDVSADVADTVPVFAQAAGAKITYIAQEAASPQAQ 116
Query: 123 LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ K EL + + G + +L + K +
Sbjct: 117 AILVPGDSPLKSVAELKGRKVAVTKGAGSHYLLLAALKAEGLPFKSITPAYLTPADG--- 173
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDL--NIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
R +++W+P + + L G +S + + Y +K +
Sbjct: 174 -RSALAGGSVDAWVAWDPFLSAAQIQAGARILKDGTGLSAYKRYY---LASDAYAEKRAD 229
Query: 241 ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPD 282
+ LL VA E ++ +PD
Sbjct: 230 VLTLL------VAKLRE---------------AGAWVKANPD 250
>gi|50913614|ref|YP_059586.1| ABC transporter amino acid-binding protein [Streptococcus pyogenes
MGAS10394]
gi|50902688|gb|AAT86403.1| ABC transporter amino acid-binding protein [Streptococcus pyogenes
MGAS10394]
Length = 528
Score = 38.3 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 30/291 (10%), Positives = 68/291 (23%), Gaps = 27/291 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFAD------TGWTDIAATTAMTSVILEE--- 51
M K++ CL A + +R WT A+ +V +E
Sbjct: 7 MKKLILSCLVALALLFGGMSRAQANQYLRVGMEAAYAPFNWTQDDASNG--AVPIEGTSQ 64
Query: 52 -ILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGA 110
GY + + L + G I S N
Sbjct: 65 YANGYDVQVAKKIAKAMNKELLV-VKTSWTGLIPALTSGKIDMITAGMSPTKERRNEISF 123
Query: 111 KYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
+ + A K+ + G + +
Sbjct: 124 SNSYYTSQPVLVVTANGKYAEATSLKDFSGAKVTAQQGVWHVNLLTQLKGAK--LQTPMG 181
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
A S + + P + + + + E+ V
Sbjct: 182 DFSQMRQALTSGVIDAYISERPEAMTAEAADSRLKMITLK------KGFAVAESDAAIAV 235
Query: 231 -RSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNK---QDRQFVGRTML 277
D+ ++++L+ + + +M ++ + + + + L
Sbjct: 236 GMKKNDDRMATVNQVLEGFSQTDRM--ALMDDMVTKQPVEKKAEDAKASFL 284
>gi|257483757|ref|ZP_05637798.1| sulfonate ABC transporter, periplasmic sulfonate-binding protein,
putative [Pseudomonas syringae pv. tabaci ATCC 11528]
Length = 321
Score = 38.3 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 25/268 (9%), Positives = 66/268 (24%), Gaps = 45/268 (16%)
Query: 23 DSCTPVRFADTGWTDIA---ATTAMTSVILEEILGYKTNIKLLAV-PVTFRSLKNKGIDI 78
+R + + A ++ + E+ G K P L ID
Sbjct: 26 AQAEDLRIGYQKYGTLVLLKAKGSLEKRLAEQ--GVKVQWTEFPGGPQLLEGLNVGSIDF 83
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL 138
+ P + A + K+L
Sbjct: 84 GVTGETPPVFAQAAGADL-------------LYVAYEPPAPTSEAILVHKDSPITSVKDL 130
Query: 139 GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
K + G+ + ++ + + + + + R ++ W
Sbjct: 131 KGKKVVLNKGSNVHYLLVKALEDAGLKYTDIQTVFLPP----ADARAAFERGSVDAWVIW 186
Query: 199 EPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEM 258
+P+ ++ + ++ +G + + + Y K P + +
Sbjct: 187 DPYQAAAEKQLQARTL-KDGTGIVDNHQFYLATKPYAQKNPKV-------------IQAL 232
Query: 259 MKLILNNKQDRQFVGRTMLRTHPDLLKN 286
++ + + HPD +
Sbjct: 233 IEEVR--------AVGEWSKAHPDEVTK 252
>gi|289812607|ref|ZP_06543236.1| DL-methionine transporter substrate-binding subunit [Salmonella
enterica subsp. enterica serovar Typhi str. AG3]
Length = 85
Score = 38.3 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 7/64 (10%), Positives = 15/64 (23%), Gaps = 3/64 (4%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTP--VRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+K A L D P ++ + + + +E G +
Sbjct: 5 FKTFAAVGALIGSLALAGCGQDEKDPNHIKVGVIVGAEQQV-AEVAQKVAKEKYGLDVEL 63
Query: 60 KLLA 63
Sbjct: 64 VTFN 67
>gi|92114224|ref|YP_574152.1| lipoprotein YaeC [Chromohalobacter salexigens DSM 3043]
gi|91797314|gb|ABE59453.1| Lipoprotein YaeC [Chromohalobacter salexigens DSM 3043]
Length = 275
Score = 38.3 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 26/234 (11%), Positives = 60/234 (25%), Gaps = 10/234 (4%)
Query: 18 YARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVT-FRSLKNKGI 76
D ++ + + I ++ G I V+ +L + +
Sbjct: 29 CGGDDAETQSIKVGTVAGPETDVM-QVAKQIAKDEYGLDVEIVEFTDYVSPNAALADGSL 87
Query: 77 DIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKK 136
D P L + + +I Y +D+ S
Sbjct: 88 DANAFQHEPYLNSMVEDRGYDFAIAGKTFVYPIGAYSERYDDIADLPDGASIALPNDPSN 147
Query: 137 ELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRD-QRNNIPAVF 195
E + I N+ ++++ + + F +I +P V
Sbjct: 148 EGRSLIL------MHNEGLIELNDPENLEATPIDISNNPHDYEFREIEAAQLPRVLPDVD 201
Query: 196 LSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
L++ + + + V +V + I L+K +
Sbjct: 202 LAFINNTFAQPAGLSLDDALIKEGPESPY-VNLIVTREGKQDDEAIQNLVKAYQ 254
>gi|309389676|gb|ADO77556.1| ABC transporter substrate-binding protein [Halanaerobium praevalens
DSM 2228]
Length = 336
Score = 38.3 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 13/108 (12%), Positives = 29/108 (26%), Gaps = 16/108 (14%)
Query: 1 MYKILAVCLFLT---TFSISYARDADSCTPVRFADTGWTDIAATTA----MTSVI--LEE 51
M K +++ L L+ + + + + A + + + LE+
Sbjct: 1 MKKYISIFLILSCGLFLLAGCSTQSKTKKTITIA-----EQYGLAYAPVQIIKELNFLEQ 55
Query: 52 -ILGYKTNIKL-LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEE 97
+ K S+ +DI P L +
Sbjct: 56 IDPDLEVEWKQLSNTTAIRESMLAGEVDIAFMAVPPFLIAKDKGMEWK 103
>gi|298482164|ref|ZP_07000352.1| conserved hypothetical protein [Bacteroides sp. D22]
gi|298271721|gb|EFI13294.1| conserved hypothetical protein [Bacteroides sp. D22]
Length = 413
Score = 38.3 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 11/59 (18%), Positives = 17/59 (28%), Gaps = 1/59 (1%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRF-ADTGWTDIAATTAMTSVILEEILGYKTN 58
M K L + FL A+ + W A + + E G+K
Sbjct: 1 MKKNLFIFTFLLGVFSLSAQAQKQEKTITIEVQNNWNQAKADAPVVINLHELHAGFKVK 59
>gi|331012091|gb|EGH92147.1| sulfonate ABC transporter periplasmic sulfonate-binding protein
SsuA [Pseudomonas syringae pv. tabaci ATCC 11528]
Length = 321
Score = 37.9 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 25/268 (9%), Positives = 66/268 (24%), Gaps = 45/268 (16%)
Query: 23 DSCTPVRFADTGWTDIA---ATTAMTSVILEEILGYKTNIKLLAV-PVTFRSLKNKGIDI 78
+R + + A ++ + E+ G K P L ID
Sbjct: 26 AQAEDLRIGYQKYGTLVLLKAKGSLEKRLAEQ--GVKVQWTEFPGGPQLLEGLNVGSIDF 83
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL 138
+ P + A + K+L
Sbjct: 84 GVTGETPPVFAQAAGADL-------------LYVAYEPPAPTSEAILVHKDSPITSVKDL 130
Query: 139 GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
K + G+ + ++ + + + + + R ++ W
Sbjct: 131 KGKKVVLNKGSNVHYLLVKALEDAGLKYTDIQTVFLPP----ADARAAFERGSVDAWVIW 186
Query: 199 EPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEM 258
+P+ ++ + ++ +G + + + Y K P + +
Sbjct: 187 DPYQAAAEKQLQARTL-KDGTGIVDNHQFYLATKPYAQKNPKV-------------IQAL 232
Query: 259 MKLILNNKQDRQFVGRTMLRTHPDLLKN 286
++ + + HPD +
Sbjct: 233 IEEVR--------AVGEWSKAHPDEVTK 252
>gi|323343730|ref|ZP_08083957.1| phosphodiesterase/nucleotide pyrophosphatase family protein
[Prevotella oralis ATCC 33269]
gi|323095549|gb|EFZ38123.1| phosphodiesterase/nucleotide pyrophosphatase family protein
[Prevotella oralis ATCC 33269]
Length = 298
Score = 37.9 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 27/204 (13%), Positives = 49/204 (24%), Gaps = 32/204 (15%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M +I+ L+ + A + + A GW A +
Sbjct: 1 MKRIIICLFLLSAVMPNLAAKPKAKHVLMIAIDGWASWAFQ------------------Q 42
Query: 61 LLAVPVTFRSLKNK-----GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
VP ++N + + E + + +
Sbjct: 43 ADHVPNMHNLMENGCYTMKKRSMLPSASAINWATTFMGISTEMHGYTQWNSRKPEIPPVE 102
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
VN G I S K E G I +I++ S + L +
Sbjct: 103 VNSRGICPTIYSIIREQKPTVE-----TGCICDW---DVIPYLIDSTTVSYHEYTLSPGN 154
Query: 176 ELASFSQ-IRRDQRNNIPAVFLSW 198
+Q + P F +
Sbjct: 155 ACEPLTQKAISYIKAKKPDFFTVY 178
>gi|92114206|ref|YP_574134.1| molybdate-binding protein [Chromohalobacter salexigens DSM 3043]
gi|91797296|gb|ABE59435.1| molybdate-binding protein [Chromohalobacter salexigens DSM 3043]
Length = 281
Score = 37.9 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 31/288 (10%), Positives = 69/288 (23%), Gaps = 21/288 (7%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYKT 57
M K + S A + VR A T + + +L E Y+
Sbjct: 1 MLKRRLSLIAALALSCLLVPVAQAADTVRLAT---TTSTYNSGLLDYLLPKFEADHPYQI 57
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+ + R ++ +D+ + + + + F+ ++ + +
Sbjct: 58 QVIPVGTGKALRLGRDGDVDLVLTHAPAAEKAFVDA---GYGVEPHGVMYNDFVIVGPTD 114
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
D G E A + +++ + + A +
Sbjct: 115 DPAGIAGGDDATQAFATLAEDDALFVSRGDDSGTDKKEKILWEQAGVTPDFDGFRAAGQG 174
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDK 237
++ R D + + F V V Y D
Sbjct: 175 --MGEVLRMASELQGYTLTDRGTWLAMQDKLDLEIMVEGDTQLFNPYQVILVNPERYDDL 232
Query: 238 CPNISRLLKNIKFSVALEN-----EMMKLI-----LNNKQDRQFVGRT 275
+R L S ++ + + D + V
Sbjct: 233 NTEGARALAEWLISDEGQSLIDGFRLNGKVLFHASAGEDVDPESVANQ 280
>gi|330954781|gb|EGH55041.1| ABC transporter, substrate-binding protein, aliphatic sulfonate
[Pseudomonas syringae Cit 7]
Length = 321
Score = 37.9 bits (86), Expect = 1.8, Method: Composition-based stats.
Identities = 25/268 (9%), Positives = 69/268 (25%), Gaps = 45/268 (16%)
Query: 23 DSCTPVRFADTGWTDIA---ATTAMTSVILEEILGYKTNIKLLAV-PVTFRSLKNKGIDI 78
+R + + A ++ + E+ G K P L ID
Sbjct: 26 AQAEDLRIGYQKYGTLVLLKAKGSLEKRLAEQ--GVKVQWTEFPGGPQLLEGLNVGSIDF 83
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL 138
+ P A + + E + V +K +
Sbjct: 84 GVTGETP---PVFAQAAGADLLYVAYEPPAPTSEAILVPKDSPITSVKDLKG-------- 132
Query: 139 GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
K + G+ + ++ + + + + + R ++ W
Sbjct: 133 --KKVVLNKGSNVHYLLVKALEDAGLKYTDIQTVFLPP----ADARAAFERGSVDAWVIW 186
Query: 199 EPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEM 258
+P+ ++ + ++ +G + + + Y K P + +
Sbjct: 187 DPYQAAAEKQLQARTL-KDGTGIVDNHQFYLATKPYAQKNPKV-------------IQAL 232
Query: 259 MKLILNNKQDRQFVGRTMLRTHPDLLKN 286
++ + + +PD +
Sbjct: 233 IEEVR--------AVGEWSKANPDEVTQ 252
>gi|238788931|ref|ZP_04632721.1| Taurine-binding periplasmic protein [Yersinia frederiksenii ATCC
33641]
gi|238722958|gb|EEQ14608.1| Taurine-binding periplasmic protein [Yersinia frederiksenii ATCC
33641]
Length = 318
Score = 37.9 bits (86), Expect = 1.8, Method: Composition-based stats.
Identities = 10/67 (14%), Positives = 17/67 (25%), Gaps = 1/67 (1%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
I W P L ++ +G ++ VVR D+ P
Sbjct: 150 AIAAAWLRGDIDGAYVWAPAVNELAKTGTVLTDSAQVGQWGAPTLDVWVVRKDFATAHPE 209
Query: 241 ISRLLKN 247
+
Sbjct: 210 VVTAFAR 216
>gi|253998657|ref|YP_003050720.1| NMT1/THI5 like domain-containing protein [Methylovorus sp. SIP3-4]
gi|253985336|gb|ACT50193.1| NMT1/THI5 like domain protein [Methylovorus sp. SIP3-4]
Length = 331
Score = 37.9 bits (86), Expect = 1.8, Method: Composition-based stats.
Identities = 29/205 (14%), Positives = 58/205 (28%), Gaps = 29/205 (14%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL----GYK 56
+ I + + F + A +A + P++ + W A V +E+ G
Sbjct: 10 IKNIARMAVLAAGFCFTMAAEAAA--PLKIGYSDWPGWVA----WQVAIEKGWFKEAGVD 63
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ + ID +L I N
Sbjct: 64 VKFDWFDYSASMNAFSAGKIDAVTVTNGDALVTAAGGAKNVMIIVTDYSNGNDMIVG--- 120
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
GIKS +D+ K G+E G + +L+ + L+
Sbjct: 121 -----KPGIKSLKDLK-------GKKIGLELGLVEHLLLLNGLQKAGLKESDVTLVNTP- 167
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPH 201
++ + + A +W+P+
Sbjct: 168 ---TNETPQALASGDLAAIGAWQPN 189
>gi|253701138|ref|YP_003022327.1| tungstate ABC transporter permease [Geobacter sp. M21]
gi|251775988|gb|ACT18569.1| ABC-type tungstate transport system permease component-like protein
[Geobacter sp. M21]
Length = 282
Score = 37.9 bits (86), Expect = 1.8, Method: Composition-based stats.
Identities = 21/195 (10%), Positives = 54/195 (27%), Gaps = 4/195 (2%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M + A LT + + A V A T T + + + ++ GY
Sbjct: 7 MMSLFAALFVLTAVASVPSGWAAE-KTVILATTTSTQDSGLLDVLIPMFQKQTGYFVKTI 65
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ + + D+ + + + + F+A ++ + D
Sbjct: 66 SVGSGQAMKMGERGEADVLLVHSPEAEKAFMAGEFGVNRKLVMHNDFILLGPAG---DPA 122
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
G K+ D K + + + + + + +G + + + L
Sbjct: 123 KIRGAKTAADALKAIAASNSLFLSRGDNSGTHAKEKGLFKAAGMNPEGQKWFQQTGLGMG 182
Query: 181 SQIRRDQRNNIPAVF 195
+ +
Sbjct: 183 ETMNVAAEKKGYLLA 197
>gi|295102749|emb|CBL00294.1| ABC-type nitrate/sulfonate/bicarbonate transport systems,
periplasmic components [Faecalibacterium prausnitzii
L2-6]
Length = 339
Score = 37.9 bits (86), Expect = 1.8, Method: Composition-based stats.
Identities = 32/239 (13%), Positives = 71/239 (29%), Gaps = 27/239 (11%)
Query: 17 SYARDADSCTPVRFADTGWTDIAATTAMTSVILEEI----LGYKTNIKLLAVPVTFRSLK 72
+ A + T VR A + S +E+ L Y + A L
Sbjct: 19 ACGASAKTSTKVRIAGLKGPTTMGLVNLLS--MEKDGTASLDYDLQL-YGAADEIVPKLI 75
Query: 73 NKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIA 132
+D+ + + + G ++AVN +G ++ +
Sbjct: 76 KGELDMAA--------------IPANLAATLYQKTNGGIQVMAVNTLGVLYVVEKGNTVH 121
Query: 133 KYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE--ASELASFSQIRRDQRNN 190
+ G I G + ++ N IE + +Q+ +++
Sbjct: 122 SFADLRGRTILSTGKGTTPEYVLRYLLRKNGLDPDKDVKIEYYSEASEVTAQMAAARKDA 181
Query: 191 IPAVFLSWEPHPINSDLNIHYLPG----GEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
I + + D + + ++ + TVVR++Y + P++
Sbjct: 182 IAVLPQPYVTAAQMKDSGLRVVLDLTREWNKVCDTQLITGVTVVRTEYAKQNPDVIAAF 240
>gi|215489006|ref|YP_002331437.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli O127:H6 str.
E2348/69]
gi|312967925|ref|ZP_07782137.1| D-methionine-binding lipoprotein metQ [Escherichia coli 2362-75]
gi|215267078|emb|CAS11523.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli O127:H6 str.
E2348/69]
gi|312287486|gb|EFR15394.1| D-methionine-binding lipoprotein metQ [Escherichia coli 2362-75]
gi|323189600|gb|EFZ74880.1| D-methionine-binding lipoprotein metQ [Escherichia coli RN587/1]
Length = 272
Score = 37.9 bits (86), Expect = 1.8, Method: Composition-based stats.
Identities = 20/238 (8%), Positives = 55/238 (23%), Gaps = 19/238 (7%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
+ + ++ + + + +E G + + + N
Sbjct: 26 QSSSDEKHIKVGVINGAEQDV-AEVAKKVAKEKYGLDVELVGFSGSLLPNDATN---HGE 81
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
+ F+ + KLVA G++ IK+ I +
Sbjct: 82 LDANVFQHRPFLEQDNQTHGYKLVAV-----GNTFVFPMAGYSKKIKTVAQIKEGATVAI 136
Query: 140 AKIYGIEPGNEGNQRILDMI---NNNKFSLKGFRLIEASELASFSQIRRD-----QRNNI 191
+ +I + + ++ +
Sbjct: 137 PNDPTNLGRALLLLQKEKLITLKEGKGLLPTALDITDNPRHLQIMELEGAQLPRVLDDPK 196
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
V + + + L+ E V +V + N+ L++ +
Sbjct: 197 VDVAIISTTYIQQTGLSPVNDSVFIEDKNSP--YVNILVAREDNKNAENVKEFLQSYQ 252
>gi|295703711|ref|YP_003596786.1| putative methionine import ABC transporter methionine-binding
protein Met [Bacillus megaterium DSM 319]
gi|294801370|gb|ADF38436.1| putative methionine import ABC transporter, methionine-binding
protein Met [Bacillus megaterium DSM 319]
Length = 272
Score = 37.9 bits (86), Expect = 1.9, Method: Composition-based stats.
Identities = 24/261 (9%), Positives = 61/261 (23%), Gaps = 24/261 (9%)
Query: 1 MYKI---LAVCLFLTTFSISYA-----RDADSCTPVRFADTGWTDIAATTAMTSVILEEI 52
M K+ + + L + +S A A + TG + + ++
Sbjct: 1 MKKVTKAIGLTLVAASLLVSAACSKTEAQALDSKKITIGVTGGPHQQIADQVKKLAKKDG 60
Query: 53 LGYKTNI-----KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL 107
+ + N + + + + + +
Sbjct: 61 IDITVKVFNDYNTPNTALDQHDLDSNNYQTLPFLKQQVEDKNYKITDVFKTVAFPMGIYA 120
Query: 108 QGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK 167
K + + + + K + + I NK L+
Sbjct: 121 NSLKNVSELKKGDKIAVPNDPSNEYRALKLFESAGVIKLKDDVKTTATKKDIAENKLDLQ 180
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
L + + ++ N A+ S + + + + V
Sbjct: 181 IVELEASQLPSQLDEVAAAAINTNFAMGAG------LSINDDAIYHEKIKNNPYPNYFV- 233
Query: 228 TVVRSDYLDKCPNISRLLKNI 248
VR++ I L+
Sbjct: 234 --VRTENKQD--KIIDKLEKY 250
>gi|289672262|ref|ZP_06493152.1| ABC transporter, substrate-binding protein, aliphatic sulphonates
[Pseudomonas syringae pv. syringae FF5]
gi|330939257|gb|EGH42658.1| ABC transporter, substrate-binding protein, aliphatic sulfonate
[Pseudomonas syringae pv. pisi str. 1704B]
Length = 321
Score = 37.9 bits (86), Expect = 1.9, Method: Composition-based stats.
Identities = 26/268 (9%), Positives = 68/268 (25%), Gaps = 45/268 (16%)
Query: 23 DSCTPVRFADTGWTDIA---ATTAMTSVILEEILGYKTNIKLLAV-PVTFRSLKNKGIDI 78
+R + + A ++ + E+ G K P L ID
Sbjct: 26 AQAEDLRIGYQKYGTLVLLKAKGSLEKRLAEQ--GVKVQWTEFPGGPQLLEGLNVGSIDF 83
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL 138
+ P A + + E + V +K +
Sbjct: 84 GVTGETP---PVFAQAAGADLLYVAYEPPAPTSEAILVPKDSPITSVKDLKG-------- 132
Query: 139 GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
K + G+ + ++ + + + + + R ++ W
Sbjct: 133 --KKVVLNKGSNVHYLLVKALEDAGLKYTDIQTVFLPP----ADARAAFERGSVDAWVIW 186
Query: 199 EPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEM 258
+P+ ++ + ++ +G + + + Y K P + + L
Sbjct: 187 DPYQAAAEKQLQARTL-KDGTGIVDNHQFYLATKPYAQKNPKVIQAL------------- 232
Query: 259 MKLILNNKQDRQFVGRTMLRTHPDLLKN 286
+ + +PD +
Sbjct: 233 --------VEEVRAVGEWSKANPDEVTQ 252
>gi|319790872|ref|YP_004152512.1| extracellular solute-binding protein, family 3 [Variovorax
paradoxus EPS]
gi|315593335|gb|ADU34401.1| extracellular solute-binding protein, family 3 [Variovorax
paradoxus EPS]
Length = 348
Score = 37.9 bits (86), Expect = 1.9, Method: Composition-based stats.
Identities = 31/278 (11%), Positives = 68/278 (24%), Gaps = 24/278 (8%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL 62
K+ ++ + A T + +GWT A + + + G +K++
Sbjct: 34 KVASLLAAGACAAGMAGTAAAQDTKIALGMSGWTGFAPLSLADKAGIFKKNGLDVELKMI 93
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
+L + I +++ + +AV +
Sbjct: 94 PQKDRHLALASGAIQ---CAATTVETHVAWNANGVPIVQIFQMDKSYGADGIAVRNDVKT 150
Query: 123 LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ I G P M++ N SLK +++
Sbjct: 151 FADLKGKSIGVSAP-------GTAPYFGLAW----MLSKNGMSLKDVKVVSLEPQP---- 195
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ +++EP+ N + +L P +
Sbjct: 196 AAQAFVAGQNDAAMTYEPYLSTVRANPAAGKILATTLDYPMVMDTVGCAPTWLKANPKAA 255
Query: 243 RLLKNIKFSVALENEMMKLILNN------KQDRQFVGR 274
L F + N KQ + +
Sbjct: 256 AALTKSYFDALDMIKADPAKSNELMGSAVKQSGEQFAK 293
>gi|73540634|ref|YP_295154.1| signal peptide protein [Ralstonia eutropha JMP134]
gi|72118047|gb|AAZ60310.1| probable signal peptide protein [Ralstonia eutropha JMP134]
Length = 273
Score = 37.9 bits (86), Expect = 1.9, Method: Composition-based stats.
Identities = 28/273 (10%), Positives = 69/273 (25%), Gaps = 35/273 (12%)
Query: 10 FLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYKTNIKLLAVPV 66
L + + A ++ A T T+ + + +L E+ G + +
Sbjct: 11 VLGSITCLMALSVAQAGELKLATTTSTEN---SGLLKYLLPKFEQKSGVNVKVIAVGSGK 67
Query: 67 TFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL------------QGAKYML 114
+ + +D+ + + ++F+A ++ + +G K +L
Sbjct: 68 AMKMGEMGDVDVLLVHARKMEDEFVAAGYGVNRRDVMYNDFIVVGPASDPAGIKGGKDVL 127
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLK-GFRLIE 173
A G K ++ K Y + G E + +
Sbjct: 128 AGFRKLAGSGSKFISRGDNSGTDVMEKDYWKQLGIEPKGQPWYVNAGLGMGEVLTMAAQM 187
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+ S R + + +G +V
Sbjct: 188 PAYTLSDRATYGAYRAKTGLAI--------------AVQGDPKMFNPYGVIAVNPARHPG 233
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNK 266
P+ +L++ I + +
Sbjct: 234 T--NYPDAMKLVEWITSPEGQRAIAGYKVEGEQ 264
>gi|330970747|gb|EGH70813.1| ABC transporter, substrate-binding protein, aliphatic sulfonate
[Pseudomonas syringae pv. aceris str. M302273PT]
Length = 321
Score = 37.9 bits (86), Expect = 1.9, Method: Composition-based stats.
Identities = 26/268 (9%), Positives = 68/268 (25%), Gaps = 45/268 (16%)
Query: 23 DSCTPVRFADTGWTDIA---ATTAMTSVILEEILGYKTNIKLLAV-PVTFRSLKNKGIDI 78
+R + + A ++ + E+ G K P L ID
Sbjct: 26 AQAEDLRIGYQKYGTLVLLKAKGSLEKRLAEQ--GVKVQWTEFPGGPQLLEGLNVGSIDF 83
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL 138
+ P A + + E + V +K +
Sbjct: 84 GVTGETP---PVFAQAAGADLLYVAYEPPAPTSEAILVPKDSPITSVKDLKG-------- 132
Query: 139 GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
K + G+ + ++ + + + + + R ++ W
Sbjct: 133 --KKVVLNKGSNVHYLLVKALEDAGLKYTDIQTVFLPP----ADARAAFERGSVDAWVIW 186
Query: 199 EPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEM 258
+P+ ++ + ++ +G + + + Y K P + + L
Sbjct: 187 DPYQAAAEKQLQARTL-KDGTGIVDNHQFYLATKPYAQKNPKVIQAL------------- 232
Query: 259 MKLILNNKQDRQFVGRTMLRTHPDLLKN 286
+ + +PD +
Sbjct: 233 --------VEEVRAVGEWSKANPDEVTQ 252
>gi|302188524|ref|ZP_07265197.1| ABC transporter, substrate-binding protein, aliphatic sulphonates
[Pseudomonas syringae pv. syringae 642]
Length = 321
Score = 37.9 bits (86), Expect = 1.9, Method: Composition-based stats.
Identities = 26/267 (9%), Positives = 69/267 (25%), Gaps = 45/267 (16%)
Query: 23 DSCTPVRFADTGWTDIA---ATTAMTSVILEEILGYKTNIKLLAV-PVTFRSLKNKGIDI 78
+R + + A ++ + E+ G K P L ID
Sbjct: 26 AQAEDLRIGYQKYGTLVLLKAKGSLEKRLAEQ--GVKVQWTEFPGGPQLLEGLNVGSIDF 83
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL 138
+ P A + + E + V +K +
Sbjct: 84 GVTGETP---PVFAQAAGADLLYVAYEPPAPTSEAILVPKDSPITSVKDLKG-------- 132
Query: 139 GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
K + G+ + ++ + + + + + R ++ W
Sbjct: 133 --KKVVLNKGSNVHYLLVKALEDAGLKYTDIQTVFLPP----ADARAAFERGSVDAWVIW 186
Query: 199 EPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEM 258
+P+ ++ + ++ SG + + + Y K P + +
Sbjct: 187 DPYQAAAEKQLQARTL-KDGSGIVDNHQFYLATKPYAQKNPKV-------------IQAL 232
Query: 259 MKLILNNKQDRQFVGRTMLRTHPDLLK 285
++ + + +PD +
Sbjct: 233 IEEVR--------AVGEWSKANPDEVT 251
>gi|194290582|ref|YP_002006489.1| ABC transporter periplasmic protein [Cupriavidus taiwanensis LMG
19424]
gi|193224417|emb|CAQ70428.1| putative ABC-type transporter, periplasmic binding component
[Cupriavidus taiwanensis LMG 19424]
Length = 322
Score = 37.9 bits (86), Expect = 2.0, Method: Composition-based stats.
Identities = 31/219 (14%), Positives = 55/219 (25%), Gaps = 18/219 (8%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPS 86
PV +GWT A T + + G IK++ +L + I
Sbjct: 33 PVTLGMSGWTGFAPLTLADKAGIFKKNGVDVEIKMIPQKDRHLALASGAIQCAATTVETH 92
Query: 87 LEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE 146
+ ++L + A L K+ A G
Sbjct: 93 VAWNANGVPITQIVQLDKSYGADGLAVRADVKSFADLKGKTIGVDAP----------GTA 142
Query: 147 PGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSD 206
P M+ N SLK + S + +++EP+
Sbjct: 143 PYFGLAW----MLKKNGMSLKDVKTTTLSP----QAAAQAFVAGQNDGAMTYEPYLSTVR 194
Query: 207 LNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLL 245
N + + +L P ++ L
Sbjct: 195 QNPDKGKILATTLDYPMVTDTLGCAPKWLKDNPKAAQAL 233
>gi|126664795|ref|ZP_01735779.1| ABC-type tungstate transport system, permease component
[Marinobacter sp. ELB17]
gi|126631121|gb|EBA01735.1| ABC-type tungstate transport system, permease component
[Marinobacter sp. ELB17]
Length = 268
Score = 37.9 bits (86), Expect = 2.0, Method: Composition-based stats.
Identities = 13/107 (12%), Positives = 32/107 (29%), Gaps = 1/107 (0%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K L + L ++ A A + + A T T+ + +E + +
Sbjct: 1 MRKTLTLVL-AGLTTMGLAAGAYADDYITLASTTSTENSGLFNAILPQFKEATDIEVRVV 59
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL 107
+ F + D + + +F+ ++ +
Sbjct: 60 AVGTGQAFEIARRGDADSLLVHDTAGELRFVENGYATERADVMYNDF 106
>gi|153002813|ref|YP_001368494.1| extracellular solute-binding protein [Shewanella baltica OS185]
gi|160877558|ref|YP_001556874.1| extracellular solute-binding protein [Shewanella baltica OS195]
gi|217975400|ref|YP_002360151.1| extracellular solute-binding protein [Shewanella baltica OS223]
gi|304412002|ref|ZP_07393612.1| extracellular solute-binding protein family 1 [Shewanella baltica
OS183]
gi|307305897|ref|ZP_07585643.1| extracellular solute-binding protein family 1 [Shewanella baltica
BA175]
gi|151367431|gb|ABS10431.1| extracellular solute-binding protein, family 1 [Shewanella baltica
OS185]
gi|160863080|gb|ABX51614.1| extracellular solute-binding protein, family 1 [Shewanella baltica
OS195]
gi|217500535|gb|ACK48728.1| extracellular solute-binding protein [Shewanella baltica OS223]
gi|304349552|gb|EFM13960.1| extracellular solute-binding protein family 1 [Shewanella baltica
OS183]
gi|306911390|gb|EFN41816.1| extracellular solute-binding protein family 1 [Shewanella baltica
BA175]
gi|315269756|gb|ADT96609.1| extracellular solute-binding protein family 1 [Shewanella baltica
OS678]
Length = 274
Score = 37.9 bits (86), Expect = 2.0, Method: Composition-based stats.
Identities = 32/276 (11%), Positives = 87/276 (31%), Gaps = 27/276 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYKT 57
+ +L + + + F++ A S ++ A T T+ + + +L E GYK
Sbjct: 8 IKSLLGLVVAASMFTVLPA---HSTEVIKLATTTSTEN---SGLLKELLPKFESESGYKV 61
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP--YLEEGSIKLVAENLQGAKYMLA 115
+ + + +D+ M + + KF+A +E I + G K
Sbjct: 62 QVIATGTGKALKLGEQGDVDLVMTHAPSAEAKFVADGFGVEPRGIMENDFVVLGPKN--- 118
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
D K+ ++ + G + + + L++ +
Sbjct: 119 --DPAKIRDSKNAEEAFAKIAKSGVPFISRGDNSGTHIKELEVWKAASVTPDFKGYTSVG 176
Query: 176 ELASFSQIRRDQRNNIPA----VFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVR 231
+ + + ++ F++++ L++ G + V +
Sbjct: 177 QGMGKTLLMANEMQGYTLSDRGTFVAYKT-----KLDLGVDFDGGKTLANP-YQVILINS 230
Query: 232 SDYLDKCPNISRLLKNIKFSVALENEMMK-LILNNK 266
+ Y D ++ + S ++ + + +
Sbjct: 231 AKYPDLNHKGAKAFSDWLISKEGQSMINNFKVDGEQ 266
>gi|307266186|ref|ZP_07547729.1| extracellular solute-binding protein family 1 [Thermoanaerobacter
wiegelii Rt8.B1]
gi|306918790|gb|EFN49021.1| extracellular solute-binding protein family 1 [Thermoanaerobacter
wiegelii Rt8.B1]
Length = 292
Score = 37.9 bits (86), Expect = 2.0, Method: Composition-based stats.
Identities = 26/207 (12%), Positives = 57/207 (27%), Gaps = 34/207 (16%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTG----WTDIAATTAMTSVIL---EEILGYK 56
+L L + FS++ + + + + T + + +L E+ GYK
Sbjct: 12 LLYSILLFSLFSLNGCTGSKTSEKISPGNRDVILATTTSTQDSGLLDYLLPIFEKETGYK 71
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPY-------LEEGSIKLVAENLQG 109
+ + K D+ + + + ++ + + +V +
Sbjct: 72 VKVVAVGTGQALEMGKRGEADVLLTHAPAAEKELVDNKDVINYQLVMHNDFIVVGPSEDP 131
Query: 110 AKYMLAVNDVGFALGIKSYQDIA---------KYKKELGAKIYGIEP-----------GN 149
A+ AV+ I K+ K GI+P G
Sbjct: 132 AQVKNAVSVEAAFQAIAEKGVPFVSRGDDSGTHKKELSLWKAAGIDPKGKSWYIESGTGM 191
Query: 150 EGNQRILDMINNNKFSLKGFRLIEASE 176
I + + +G L
Sbjct: 192 GQTLLIANEKRAYTLTDRGTYLAYRDR 218
>gi|261328151|emb|CBH11128.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 611
Score = 37.9 bits (86), Expect = 2.0, Method: Composition-based stats.
Identities = 6/30 (20%), Positives = 9/30 (30%)
Query: 271 FVGRTMLRTHPDLLKNWLIGVTTFDGQDPS 300
+ L WL V G+D +
Sbjct: 244 AAAKEWLEAQQGKYNRWLEKVHRLQGKDTA 273
>gi|320198124|gb|EFW72728.1| Molybdenum ABC transporter, periplasmic molybdenum-binding protein
ModA [Escherichia coli EC4100B]
Length = 257
Score = 37.9 bits (86), Expect = 2.0, Method: Composition-based stats.
Identities = 26/256 (10%), Positives = 61/256 (23%), Gaps = 14/256 (5%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP 65
+F+++ AD FA T A + + ++ G +
Sbjct: 8 LFAGAALSFAVAGNTLADEGKITVFAAASLT--NAMQDIATQY-KKEKGVDVVSSFASSS 64
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
R ++ + + +K++ + + +I ++ V
Sbjct: 65 TLARQIEAGAP---ADLFISADQKWMDYAVYKKAIDTATRQTLLGNSLVVVAPKASEQKD 121
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
+ + L + I K + +
Sbjct: 122 FTIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPAEDVRGALA 181
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV------VRSDYLD--K 237
N + + + + S E+ E V V + D K
Sbjct: 182 LVERNEAPLGIVYGSDAVASKGVKVVATFPEDSHKKVEYPVAVVEGHNNATVKAFYDYLK 241
Query: 238 CPNISRLLKNIKFSVA 253
P + + K F+
Sbjct: 242 GPQAAEIFKRYGFTTK 257
>gi|225026337|ref|ZP_03715529.1| hypothetical protein EUBHAL_00579 [Eubacterium hallii DSM 3353]
gi|224956347|gb|EEG37556.1| hypothetical protein EUBHAL_00579 [Eubacterium hallii DSM 3353]
Length = 335
Score = 37.9 bits (86), Expect = 2.0, Method: Composition-based stats.
Identities = 42/286 (14%), Positives = 79/286 (27%), Gaps = 35/286 (12%)
Query: 1 MYKILAVCLFLTTFSISYAR-----DADSCTPVRFADTGWTDIAATTAMTSV-ILEEILG 54
+ KI + + DAD T + A M + L++
Sbjct: 10 LKKIFVIAGVAAMVAGLAGCGGTKKDADKTTEINVGYFNNVTHAQALYMKAQGTLDKAFD 69
Query: 55 YKTNIK---LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAK 111
K +K A P +L + IDI + K + GA
Sbjct: 70 GKAKVKWTSFNAGPSEVEALFSGDIDI-------GYIGPVPAISANVKSKGDVSIISGAS 122
Query: 112 YMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
A I+S +D+ + GN + +L ++++N
Sbjct: 123 QAGAELVKAPGSEIESAKDLDGKTVAIPQI------GNTQHLCLLKLLSDNGLKTVEEGG 176
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEP-HPINSDLNIHYLPGGEEISGFGEASV-YTV 229
+ I+ L EP + + G V V
Sbjct: 177 TVTVTAVENADIQNMMDQGNIDAALVPEPWGSTLVKNGAEIVLDYNGVYMEGNYPVAVVV 236
Query: 230 VRSDYLDKCPN-ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGR 274
VR+++L + P+ + LK + + N+ + +
Sbjct: 237 VRNEFLKEHPDLVKEFLKQHEAATDEINQ----------NADEAAK 272
>gi|119947138|ref|YP_944818.1| DL-methionine transporter substrate-binding subunit [Psychromonas
ingrahamii 37]
gi|119865742|gb|ABM05219.1| lipoprotein, YaeC family protein [Psychromonas ingrahamii 37]
Length = 271
Score = 37.9 bits (86), Expect = 2.0, Method: Composition-based stats.
Identities = 36/284 (12%), Positives = 78/284 (27%), Gaps = 25/284 (8%)
Query: 1 MYKILAVCLFLTTFSISYARDADSC---TPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
+ I AV +T +S D D+ ++ + + +E G +
Sbjct: 5 LKNIFAVVGLASTLILSGCGDKDAAVDNNKIKVGVMAGAEAQVAEVAAK-VAKEKYGLEV 63
Query: 58 NIKLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ + +T +L ID+ F + IK A
Sbjct: 64 ELITFSDYITPNAALAEGSIDV---------NAFQHKPYLDQQIKDRGYKFAVAGNTFVY 114
Query: 117 NDVGFALGIKSYQDIAKYK---KELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
G++ IKS ++ + G Q +L + +
Sbjct: 115 PIAGYSSKIKSLDELKEGDLIAVPSDPSNLGRSLMLLERQGLLVLKEGAGLGATVLDIAS 174
Query: 174 ASELASFSQIRRD-QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRS 232
+ + ++ ++ V L+ S +++ G + G V +V
Sbjct: 175 SPKNLEIVELEAAQLPRSLEDVSLAIINTTYASSIDLSPEKDGLFVEGKDSLYVNLLVAR 234
Query: 233 DYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
+ N+ LK + + I + V +
Sbjct: 235 EDNVDAENVQNFLKAYQ--TETVYDAAMKIFKDG-----VVKGW 271
>gi|27380913|ref|NP_772442.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum
USDA 110]
gi|27354079|dbj|BAC51067.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum
USDA 110]
Length = 378
Score = 37.9 bits (86), Expect = 2.0, Method: Composition-based stats.
Identities = 42/278 (15%), Positives = 70/278 (25%), Gaps = 44/278 (15%)
Query: 7 VCLFLTTFSISYARDADSCTPVRFADTGWT-DIAATTAMTSVILEE-ILGYKTNIKLLAV 64
L A A+ R A A A + I E+ L + +
Sbjct: 61 AALCCVAIGPGCASAAELLKA-RLAQNLGPISGLAIVAKSKGIFEKNGLDITVS-NFTSG 118
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
++ G DI P +A G +Y V G
Sbjct: 119 KQCLDTVIGGGADIATTAEAPVTASAMANQPIAFV--------AGMEYSDLKTVVAAKAG 170
Query: 125 IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
+K+ D+ K G G ++ + + K L+ +
Sbjct: 171 VKTKPDL-------RGKRIGFTAGTGSEVYTATLLKSAGLTPKDVTLVNLRPQEMLPALA 223
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRL 244
+WEPH N+ + + +G + VV YLD P +
Sbjct: 224 A----GSIDAIDTWEPHIANAKKALGEAVAELDTTGTYSETFNIVVMRTYLDANPAVVEK 279
Query: 245 LKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPD 282
+ LI ++ H D
Sbjct: 280 F------------IAALID---------AEVWVKAHQD 296
>gi|325521519|gb|EGD00327.1| YaeC family lipoprotein [Burkholderia sp. TJI49]
Length = 63
Score = 37.9 bits (86), Expect = 2.1, Method: Composition-based stats.
Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 1 MYKILAVCLFLTTFSISYAR-DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
M + + L +++A A + ++ D T +T V E L K
Sbjct: 1 MRRSILTSLAALGAVLAFAAPGAHADPTLKIGTMSGPDAQIWTEVTKVAAREGLAIKV 58
>gi|153008073|ref|YP_001369288.1| YaeC family lipoprotein [Ochrobactrum anthropi ATCC 49188]
gi|151559961|gb|ABS13459.1| lipoprotein, YaeC family [Ochrobactrum anthropi ATCC 49188]
Length = 259
Score = 37.9 bits (86), Expect = 2.1, Method: Composition-based stats.
Identities = 29/251 (11%), Positives = 69/251 (27%), Gaps = 14/251 (5%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K+L L F+ A VR T + + E+ G + +I+
Sbjct: 1 MRKLLVAATILAVFTAGSAFA----KTVRIGVTPGPHAQIMEKV-KEVAEKN-GLEIDIQ 54
Query: 61 LLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ V +L + ++ P L+ +A + N Y + ++
Sbjct: 55 EFSDYVIPNMALADGALEANSFQHKPYLDNQVADRGFDIVSVAETVNFPMGLYSKKLKNI 114
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+ A + E G I+ + + ++E +
Sbjct: 115 SELADGATIAIPNDPTNGGRALLVLAENG------IIKIDPAKGLKVSALDIVENPKNLK 168
Query: 180 FSQIRRD-QRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKC 238
F ++ ++ V + + ++ G + +V
Sbjct: 169 FVELDAAQLPRSMEDVDAAVINTNYAMEAGLNPATDPLVREGEKAPYINILVVRTADKDA 228
Query: 239 PNISRLLKNIK 249
+ L+ +
Sbjct: 229 DWVKTLISSYH 239
>gi|198245355|ref|YP_002214797.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|197939871|gb|ACH77204.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
Length = 171
Score = 37.9 bits (86), Expect = 2.1, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 28/130 (21%), Gaps = 2/130 (1%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M KI + + S + + V M+ L Y+ +
Sbjct: 1 MKKIACLSALAAVLAFSAGTAVAATSTVTGGYAQSDAQGVANKMSGFNL--KYRYEQDDN 58
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
L V +F + + Y A + + G Y
Sbjct: 59 PLGVIGSFTYTEKDRTNGAGDYNKGQYYGITAGPAYRLNDWASIYGVVGVGYGKFQTTDY 118
Query: 121 FALGIKSYQD 130
+
Sbjct: 119 PTYKHDTSDY 128
>gi|121607759|ref|YP_995566.1| ABC-type nitrate/sulfonate/bicarbonate transport systems
periplasmic components-like protein [Verminephrobacter
eiseniae EF01-2]
gi|121552399|gb|ABM56548.1| ABC-type nitrate/sulfonate/bicarbonate transport systems
periplasmic components-like protein [Verminephrobacter
eiseniae EF01-2]
Length = 396
Score = 37.9 bits (86), Expect = 2.1, Method: Composition-based stats.
Identities = 17/142 (11%), Positives = 37/142 (26%), Gaps = 12/142 (8%)
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKF 164
N + A L V+ A + + L + G +
Sbjct: 149 TNDESAANALMVSKAAAAQMSANPAAMKGRTILLTSNSTGDYAVQSC-------LKKYGL 201
Query: 165 SLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEA 224
S + + + ++I + + W P+
Sbjct: 202 SKQDVSIKNMGQ----AEIISALASGAANLAGLWAPNTYAVQEKAGAAELCSGKDSGAMV 257
Query: 225 SVYTVVRSDYLDKCP-NISRLL 245
V RS+Y ++ P +++ L
Sbjct: 258 PGALVARSEYAERHPEEVAKFL 279
>gi|28871225|ref|NP_793844.1| short chain dehydrogenase/reductase family oxidoreductase
[Pseudomonas syringae pv. tomato str. DC3000]
gi|28854475|gb|AAO57539.1| oxidoreductase, short chain dehydrogenase/reductase family
[Pseudomonas syringae pv. tomato str. DC3000]
gi|330878917|gb|EGH13066.1| short chain dehydrogenase/reductase family oxidoreductase
[Pseudomonas syringae pv. morsprunorum str. M302280PT]
gi|331015754|gb|EGH95810.1| oxidoreductase, short chain dehydrogenase/reductase family protein
[Pseudomonas syringae pv. lachrymans str. M302278PT]
Length = 244
Score = 37.9 bits (86), Expect = 2.1, Method: Composition-based stats.
Identities = 9/47 (19%), Positives = 19/47 (40%)
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLIL 263
+ V+T R +++D CP LL +I + + + +
Sbjct: 22 KHFNAAGWEVFTASRQNWVDDCPWAEGLLNHIHLDLEDIDSVSASMA 68
>gi|218677132|ref|YP_002395951.1| ABC transporter: Substrate-binding protein precursor [Vibrio
splendidus LGP32]
gi|218325400|emb|CAV27507.1| ABC transporter: Substrate-binding protein precursor [Vibrio
splendidus LGP32]
Length = 415
Score = 37.9 bits (86), Expect = 2.1, Method: Composition-based stats.
Identities = 33/298 (11%), Positives = 71/298 (23%), Gaps = 31/298 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRF-ADTGWTDIAATTAMTSVIL---EEILGYK 56
M + + +RF + V+L E+ G K
Sbjct: 1 MKFKTLALSCAVALGLGTTAANAADKEIRFDGFPDFDSS------LKVLLPDFEKETGIK 54
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ + L I +E+ + + L
Sbjct: 55 VDYLMNNHGDHHTKLTTN------LATGSGAGDVIVVDVEKIGPFVGSGGLVNLSENYGA 108
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ Y + ++ G D+ +E +
Sbjct: 109 DKY--EERFAPYAWAQGKGADGDMYGIPVDLGPGVMYYRTDVFEKAGID------VEEAI 160
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
S I ++ V L + + +P GE + + + VV S+
Sbjct: 161 KDWDSYIAAGEKLKEQNVQLIASAADVAQAIIFTTVPEGEGLYFDKDGN--PVVTSERFV 218
Query: 237 KCPNISRLLKNIKFSVALENEMMKLIL--NNKQDRQFVGRTMLRTHPDLLKNWLIGVT 292
+++ +++ + + N + L H L NW+ T
Sbjct: 219 HAFEVAKEIRDKGLDGRILAWSNEWYEGFRNGTFATQLSGAWLLGH---LNNWIAPET 273
>gi|330891648|gb|EGH24309.1| sulfonate ABC transporter periplasmic sulfonate-binding protein
SsuA [Pseudomonas syringae pv. mori str. 301020]
Length = 321
Score = 37.9 bits (86), Expect = 2.1, Method: Composition-based stats.
Identities = 26/268 (9%), Positives = 69/268 (25%), Gaps = 45/268 (16%)
Query: 23 DSCTPVRFADTGWTDIA---ATTAMTSVILEEILGYKTNIKLLAV-PVTFRSLKNKGIDI 78
+R + + A ++ + E+ G K P L ID
Sbjct: 26 AQAEDLRIGYQKYGTLVLLKAKGSLEKRLAEQ--GVKVQWTEFPGGPQLLEGLNVGSIDF 83
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL 138
+ P A + + E + V +K +
Sbjct: 84 GVTGETP---PVFAQAAGADLLYVAYEPPAPTSEAILVPKDSPITSVKDLKG-------- 132
Query: 139 GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
K + G+ + ++ + + + + + R ++ W
Sbjct: 133 --KKVVLNKGSNVHYLLVKALEDAGLKYTDIQTVSLPP----ADARAAFERGSVDAWVIW 186
Query: 199 EPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEM 258
+P+ ++ + ++ +G + + + Y K P + +
Sbjct: 187 DPYQAAAEKQLQARTL-KDGTGIVDNHQFYLATKPYAQKNPKV-------------IQAL 232
Query: 259 MKLILNNKQDRQFVGRTMLRTHPDLLKN 286
++ + + HPD +
Sbjct: 233 IEEVR--------AVGEWSKAHPDEVTK 252
>gi|301057591|ref|ZP_07198671.1| bacterial extracellular solute-binding protein, family 7 [delta
proteobacterium NaphS2]
gi|300448315|gb|EFK12000.1| bacterial extracellular solute-binding protein, family 7 [delta
proteobacterium NaphS2]
Length = 336
Score = 37.9 bits (86), Expect = 2.1, Method: Composition-based stats.
Identities = 27/303 (8%), Positives = 63/303 (20%), Gaps = 45/303 (14%)
Query: 1 MYKILAVCLFLTTFSISY---ARDADSCTPVRFADTGW---TDIAATTAM-TSVILEEIL 53
M K +++ ++ I + P++ + + T A AM + +E+
Sbjct: 1 MRKSVSILFWIAIVGIGFMNIGSSNAQAEPIKLTYSIFFPPTHAQAIAAMDYAKEVEKRT 60
Query: 54 GYKTNIK--LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAK 111
K I + + ++ S + + + K
Sbjct: 61 NGKVQITTFPGGTLTKAPMVYDGVVNGISD-IGNSCFAYTRGRFPVMEVVDLPMGYPSGK 119
Query: 112 YMLAVNDVGFA---LGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
V D + ++ +P I S K
Sbjct: 120 VATCVADTFAKSVNPKELQDVKVLYVHAHGPGLLHTKKPVRTLEDLKGMKIRATGLSAKV 179
Query: 169 FRLIEA-SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNI----HYLPGGEEISGFGE 223
+ + + P + Y ++
Sbjct: 180 VEALGGVPVAMPQGDTYEALQKGVVEGTFG--PIEVLKGWKQGEVVKYTTDCSDVGYTTA 237
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDL 283
V V+ D + L + K+ + + H
Sbjct: 238 MFV--VMNKD-----------------------KWNALPDDVKKVFEETAEEWVTVHGKA 272
Query: 284 LKN 286
Sbjct: 273 WDA 275
>gi|213972193|ref|ZP_03400277.1| oxidoreductase, short chain dehydrogenase/reductase family
[Pseudomonas syringae pv. tomato T1]
gi|301385398|ref|ZP_07233816.1| oxidoreductase, short chain dehydrogenase/reductase family protein
[Pseudomonas syringae pv. tomato Max13]
gi|302060440|ref|ZP_07251981.1| oxidoreductase, short chain dehydrogenase/reductase family protein
[Pseudomonas syringae pv. tomato K40]
gi|302130941|ref|ZP_07256931.1| oxidoreductase, short chain dehydrogenase/reductase family protein
[Pseudomonas syringae pv. tomato NCPPB 1108]
gi|213923053|gb|EEB56664.1| oxidoreductase, short chain dehydrogenase/reductase family
[Pseudomonas syringae pv. tomato T1]
Length = 244
Score = 37.9 bits (86), Expect = 2.1, Method: Composition-based stats.
Identities = 9/47 (19%), Positives = 19/47 (40%)
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLIL 263
+ V+T R +++D CP LL +I + + + +
Sbjct: 22 KHFNAAGWEVFTASRQNWVDDCPWAEGLLNHIHLDLEDIDSVSASMA 68
>gi|205352088|ref|YP_002225889.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205271869|emb|CAR36706.1| outer membrane protein X precursor [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|326627130|gb|EGE33473.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9]
Length = 171
Score = 37.9 bits (86), Expect = 2.2, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 28/130 (21%), Gaps = 2/130 (1%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M KI + + S + + V M+ L Y+ +
Sbjct: 1 MKKIACLSALAAVLAFSAGTAVAATSTVTGGYAQSDAQGVANKMSGFNL--KYRYEQDDN 58
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
L V +F + + Y A + + G Y
Sbjct: 59 PLGVIGSFTYTEKDRTNGAGDYNKGQYYGITAGPAYRLNDWASIYGVVGVGYGKFQTTDY 118
Query: 121 FALGIKSYQD 130
+
Sbjct: 119 PTYKHDTSNY 128
>gi|39934484|ref|NP_946760.1| taurine transport system protein [Rhodopseudomonas palustris
CGA009]
gi|39648333|emb|CAE26853.1| possible taurine transport system protein [Rhodopseudomonas
palustris CGA009]
Length = 356
Score = 37.9 bits (86), Expect = 2.2, Method: Composition-based stats.
Identities = 30/271 (11%), Positives = 65/271 (23%), Gaps = 32/271 (11%)
Query: 1 MYKI-----LAVCLFLTTFSISYARDADSCT-----PVRFADTGWTDIAATTAMTSVILE 50
M K L + + S++ A A + W AA T +
Sbjct: 1 MRKTRFLSSLILAGSIVALSVAGASAAPKKDFKVAWSIYVGWMPW-GYAADTGIVKKWA- 58
Query: 51 EILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGA 110
+ G +K ++ L G
Sbjct: 59 DKYGITIEVKQFND--------------YVESINQYTAGSYDAVTITNMDALSIPAAGGV 104
Query: 111 KYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
+ K + + + + + + + +NK S K +
Sbjct: 105 DTTAVIVGDFSNGNDAVILKDKKDFAAIKGQKVNLVEFSVSHYLLARALESNKLSEKDVK 164
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
++ S + + + ++W P + + GE V
Sbjct: 165 VVNTS----DADLAAAYKTADVTAVVTWNPIVSEILASPDAHKVFDSSQIPGEIMDLMVA 220
Query: 231 RSDYLDKCPNISRLLKNIKFSVALENEMMKL 261
+ + PN ++ L I + +M
Sbjct: 221 NTAVVKDNPNFAKALVGIWY--ETMAKMTAE 249
>gi|194431166|ref|ZP_03063459.1| lipoprotein 28 [Shigella dysenteriae 1012]
gi|194420621|gb|EDX36697.1| lipoprotein 28 [Shigella dysenteriae 1012]
Length = 159
Score = 37.9 bits (86), Expect = 2.2, Method: Composition-based stats.
Identities = 12/114 (10%), Positives = 30/114 (26%), Gaps = 9/114 (7%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
+ + ++ + + + +E G + + + N
Sbjct: 26 QSSSDAKHIKVGVINGAEQDV-AEVAKKVAKEKYGLDVELVGFSGSLLPNDATN---HGE 81
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAK 133
+ F+ + KLVA G++ IK+ I +
Sbjct: 82 LDANVFQHRPFLEQDNQAHGYKLVAV-----GNTFVFPMAGYSKKIKTVAQIKE 130
>gi|323965926|gb|EGB61374.1| YaeC family lipoprotein [Escherichia coli M863]
Length = 272
Score = 37.9 bits (86), Expect = 2.2, Method: Composition-based stats.
Identities = 21/241 (8%), Positives = 58/241 (24%), Gaps = 25/241 (10%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
+ + ++ + + + +E G + + + N
Sbjct: 26 QSSSDEKHIKVGVINGAEQDV-AEVAKKVAKEKYGLDVELVGFSGSLLPNDATN---HGE 81
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
+ F+ + KLVA G++ IK+ I +
Sbjct: 82 LDANVFQHRPFLEQDNQAHGYKLVAV-----GNTFVFPMAGYSKKIKTVAQIKEGATVAI 136
Query: 140 AKIYGIEPGNEGNQRILDMI---NNNKFSLKGFRLIEASELASFSQIRRDQ--------R 188
+ +I + E ++ Q +
Sbjct: 137 PNDPTNLGRALLLLQKEKLITLKEGKGLLPTALDITENPRHLQIMELEGAQLPRVLDDPK 196
Query: 189 NNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI 248
++ + S+ S ++ + V +V + N+ L++
Sbjct: 197 VDVAIISTSYIQQTGLSPVHDSVFIEDKN-----SPYVNILVAREDNKNAENVKEFLQSY 251
Query: 249 K 249
+
Sbjct: 252 Q 252
>gi|304436310|ref|ZP_07396288.1| NLPA lipoprotein [Selenomonas sp. oral taxon 149 str. 67H29BP]
gi|304370715|gb|EFM24362.1| NLPA lipoprotein [Selenomonas sp. oral taxon 149 str. 67H29BP]
Length = 313
Score = 37.9 bits (86), Expect = 2.2, Method: Composition-based stats.
Identities = 14/73 (19%), Positives = 20/73 (27%), Gaps = 9/73 (12%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCT-----PVRFADTGWTDIA--ATTAMTSVILEEIL 53
M KILA LT F + + TD A EE
Sbjct: 1 MRKILACLFCLTLFLVGGCGAPVQEKSEPLPKLTIGLMPDTDSIPFIIAAERGYFAEE-- 58
Query: 54 GYKTNIKLLAVPV 66
G + ++ +
Sbjct: 59 GVEVELQPFKSAM 71
>gi|288555331|ref|YP_003427266.1| nitrate, sulfonate bicarbonate ABC transporter substrate-binding
protein [Bacillus pseudofirmus OF4]
gi|288546491|gb|ADC50374.1| ABC transporter (substrate-binding protein) nitrate, sulfonate
bicarbonate type (NSB) [Bacillus pseudofirmus OF4]
Length = 335
Score = 37.9 bits (86), Expect = 2.2, Method: Composition-based stats.
Identities = 36/321 (11%), Positives = 82/321 (25%), Gaps = 51/321 (15%)
Query: 1 MYKILAVCLFLTTFSISYARDADS------CTPVRFADTGWTDIAATTAMTSVILEEILG 54
M K L T + A A S + D + I+ + G
Sbjct: 1 MKKWLKASGIALTIAALTACGAGSTTGDGPAENINVGYFPNLDH------AAAIVGKEKG 54
Query: 55 YKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
+ + +L V ++ N + + + +
Sbjct: 55 F-FDEELGEVTADYQHYPNG----------NDFIEALETGNLDIGYVGPGPAINYFLTGG 103
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYG----IEPGNEGNQRILDMINNNKFSLKGFR 170
+ +G A + + +G PGN + + + L+ R
Sbjct: 104 DIVVLGAAANGATLIVARDGSGIETLEDFGGKSFCTPGNGCTHNVQLEMMLKELGLESNR 163
Query: 171 L---IEASELASFSQIRRDQRNNIPAVFLS---WEPHPINSDLNIHYLPGGEEISGFGEA 224
+ +E + + + + W + + + G
Sbjct: 164 VGGTVEHQSRIAPANMVAMFEQGQIDAAAAPEPWGTYLVEELGANVITEWDQVFLGETLP 223
Query: 225 SVYTVVRSDYLDKCPNISRLL------------KNIKFSVALENEMMKLILNNKQDRQFV 272
SV V +L++ P +N + ++ N+ + + + +
Sbjct: 224 SVVIVTSKQFLEQNPETVDAFLRGHKTAVEYTQENTEGTLETINDSLFNLTQQRLPETVL 283
Query: 273 GRTM------LRTHPDLLKNW 287
THP+ L+ W
Sbjct: 284 SEAWERMVVTTETHPEALQAW 304
>gi|330889635|gb|EGH22296.1| short chain dehydrogenase/reductase family oxidoreductase
[Pseudomonas syringae pv. mori str. 301020]
Length = 244
Score = 37.9 bits (86), Expect = 2.2, Method: Composition-based stats.
Identities = 9/47 (19%), Positives = 19/47 (40%)
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLIL 263
+ V+T R +++D CP LL +I + + + +
Sbjct: 22 KHFNAAGWEVFTASRQNWVDDCPWAEGLLNHIHLDLEDIDSVSASMA 68
>gi|322385853|ref|ZP_08059496.1| peptidyl-prolyl cis-trans isomerase [Streptococcus cristatus ATCC
51100]
gi|321270138|gb|EFX53055.1| peptidyl-prolyl cis-trans isomerase [Streptococcus cristatus ATCC
51100]
Length = 376
Score = 37.5 bits (85), Expect = 2.2, Method: Composition-based stats.
Identities = 24/224 (10%), Positives = 52/224 (23%), Gaps = 27/224 (12%)
Query: 1 MYKIL---AVCLFLTTFSISYARDADSCTPVRF-------------ADTGWTDIAATTAM 44
M K + AV LF + ++ A V + M
Sbjct: 19 MKKKILTGAVTLFSVVALAACSQTAKDKDIVTMKGETITVSEFYDQVKNNGSSQQVLLQM 78
Query: 45 T-SVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLV 103
+ EE G K K + + E + +
Sbjct: 79 AIKQVFEEKYGKKVTDKEVEEAFEKMKSAYGSAFQNVLAQSGMTEDAYRDQIRANKLVEY 138
Query: 104 AEN------LQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILD 157
A L Y + + + ++ K + + E + G +
Sbjct: 139 AVKKAAEKELTDDNYKAFFETYTPEVTAQIIKVDSEEKAKEVLEKAKAEGADFGQLAKEN 198
Query: 158 MINNNKFSLKGFRLIEASELASFSQIRRDQ----RNNIPAVFLS 197
+ + G +++ +++ N + V
Sbjct: 199 STDKDTKDKGGEVKFDSTSTTVADAVKKATFALEENGVSDVITV 242
>gi|83312143|ref|YP_422407.1| ABC-type tungstate transport system, permease component
[Magnetospirillum magneticum AMB-1]
gi|82946984|dbj|BAE51848.1| ABC-type tungstate transport system, permease component
[Magnetospirillum magneticum AMB-1]
Length = 269
Score = 37.5 bits (85), Expect = 2.3, Method: Composition-based stats.
Identities = 14/96 (14%), Positives = 35/96 (36%), Gaps = 8/96 (8%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYKT 57
M ++L + L FS++ + + A T T+ + + +L + G +
Sbjct: 1 MKRLLLAAMAL--FSLAASPLGAQERFITLASTTSTEQ---SGLFGHLLPLFKAETGIEV 55
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP 93
+ + + + D + + +KF+A
Sbjct: 56 RVVAVGTGQALKLGERGDADALLVHDRAGEDKFVAD 91
>gi|150388352|ref|YP_001318401.1| phosphonate ABC transporter, periplasmic phosphonate-binding
protein [Alkaliphilus metalliredigens QYMF]
gi|149948214|gb|ABR46742.1| phosphonate ABC transporter, periplasmic phosphonate-binding
protein [Alkaliphilus metalliredigens QYMF]
Length = 290
Score = 37.5 bits (85), Expect = 2.3, Method: Composition-based stats.
Identities = 25/202 (12%), Positives = 52/202 (25%), Gaps = 14/202 (6%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMT---SVILEEILGYKT 57
M K L + L + S + +R D + +L E +G K
Sbjct: 1 MNKKLMIILMIVLISAVAGCTSAKEETIRMGFVPMMDGDKLIESVEPLAEMLSEEIGVKV 60
Query: 58 N-IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
L + +D + P +A + L A N G
Sbjct: 61 EAFTATNYVGVVEGLGSGQVDF---GFIPPFAYVLANSESNAQVVLTALNSSGE------ 111
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ ++S DI ++ + ++P + + +
Sbjct: 112 SSYRSQFLVRSDSDINDFQDIHNKTVAFVDPSSTSGYLFPGAHLMAEGVELEQDIEYIYS 171
Query: 177 LASFSQIRRDQRNNIPAVFLSW 198
+ + N V ++
Sbjct: 172 GGHDKAL-QLLLNGDVDVATTF 192
>gi|16759751|ref|NP_455368.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|16764195|ref|NP_459810.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|29142476|ref|NP_805818.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56414068|ref|YP_151143.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|62179399|ref|YP_215816.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|161614912|ref|YP_001588877.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Paratyphi B str. SPB7]
gi|167550472|ref|ZP_02344229.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|167992072|ref|ZP_02573170.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|168230738|ref|ZP_02655796.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|168236768|ref|ZP_02661826.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|168240704|ref|ZP_02665636.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|168263661|ref|ZP_02685634.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|168466437|ref|ZP_02700299.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|168820014|ref|ZP_02832014.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|194443706|ref|YP_002040071.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194447519|ref|YP_002044863.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194472347|ref|ZP_03078331.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194734266|ref|YP_002113926.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|197250125|ref|YP_002145791.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197265131|ref|ZP_03165205.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|197362991|ref|YP_002142628.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|200390627|ref|ZP_03217238.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|204929987|ref|ZP_03221008.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|207856269|ref|YP_002242920.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|213022642|ref|ZP_03337089.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Typhi str. 404ty]
gi|213163834|ref|ZP_03349544.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
gi|213423461|ref|ZP_03356443.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Typhi str. E01-6750]
gi|213424774|ref|ZP_03357524.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Typhi str. E02-1180]
gi|213622110|ref|ZP_03374893.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Typhi str. E98-2068]
gi|213650503|ref|ZP_03380556.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
gi|213850151|ref|ZP_03381049.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
gi|238913899|ref|ZP_04657736.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
gi|289823688|ref|ZP_06543300.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Typhi str. E98-3139]
gi|25301837|pir||AF0601 outer membrane protein x precursor ompX [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16419339|gb|AAL19769.1| outer membrane protease, receptor for phage OX2 [Salmonella
enterica subsp. enterica serovar Typhimurium str. LT2]
gi|16502044|emb|CAD05280.1| outer membrane protein X precursor [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29138107|gb|AAO69678.1| outer membrane protein x precursor [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|56128325|gb|AAV77831.1| outer membrane protein x precursor [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|62127032|gb|AAX64735.1| outer membrane protease, receptor for phage OX2 [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SC-B67]
gi|161364276|gb|ABX68044.1| hypothetical protein SPAB_02666 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194402369|gb|ACF62591.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194405823|gb|ACF66042.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194458711|gb|EDX47550.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194709768|gb|ACF88989.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|195630888|gb|EDX49474.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|197094468|emb|CAR59984.1| outer membrane protein x precursor [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|197213828|gb|ACH51225.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197243386|gb|EDY26006.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|197290143|gb|EDY29500.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|199603072|gb|EDZ01618.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|204320981|gb|EDZ06182.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|205324576|gb|EDZ12415.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|205329585|gb|EDZ16349.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|205334871|gb|EDZ21635.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|205340064|gb|EDZ26828.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|205343079|gb|EDZ29843.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|205347791|gb|EDZ34422.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|206708072|emb|CAR32363.1| outer membrane protein X precursor [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|261246090|emb|CBG23892.1| outer membrane protein x precursor [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267992583|gb|ACY87468.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|301157417|emb|CBW16906.1| outer membrane protein x precursor [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312911856|dbj|BAJ35830.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|320085107|emb|CBY94894.1| Outer membrane protein X Flags: Precursor [Salmonella enterica
subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
gi|321226408|gb|EFX51459.1| Outer membrane protein X precursor [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|322616308|gb|EFY13217.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322619558|gb|EFY16433.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322622746|gb|EFY19591.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322628658|gb|EFY25445.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322631595|gb|EFY28351.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322637122|gb|EFY33825.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322641679|gb|EFY38315.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|322644527|gb|EFY41067.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322648461|gb|EFY44913.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322654196|gb|EFY50519.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322658111|gb|EFY54378.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322663585|gb|EFY59787.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322670321|gb|EFY66461.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322671557|gb|EFY67679.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322676913|gb|EFY72980.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322682838|gb|EFY78857.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322686517|gb|EFY82499.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|322713870|gb|EFZ05441.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Choleraesuis str. A50]
gi|323194586|gb|EFZ79779.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323196824|gb|EFZ81968.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323204835|gb|EFZ89830.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323208936|gb|EFZ93873.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|323213921|gb|EFZ98691.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323215227|gb|EFZ99972.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323220853|gb|EGA05291.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323227287|gb|EGA11455.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323229905|gb|EGA14028.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323233130|gb|EGA17226.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323240865|gb|EGA24907.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323243182|gb|EGA27202.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323248721|gb|EGA32649.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323251725|gb|EGA35592.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323257537|gb|EGA41225.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323261460|gb|EGA45041.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323267891|gb|EGA51370.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323272042|gb|EGA55457.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|332987763|gb|AEF06746.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
Length = 171
Score = 37.5 bits (85), Expect = 2.3, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 28/130 (21%), Gaps = 2/130 (1%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M KI + + S + + V M+ L Y+ +
Sbjct: 1 MKKIACLSALAAVLAFSAGTAVAATSTVTGGYAQSDAQGVANKMSGFNL--KYRYEQDDN 58
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
L V +F + + Y A + + G Y
Sbjct: 59 PLGVIGSFTYTEKDRTNGAGDYNKGQYYGITAGPAYRLNDWASIYGVVGVGYGKFQTTDY 118
Query: 121 FALGIKSYQD 130
+
Sbjct: 119 PTYKHDTSDY 128
>gi|84386764|ref|ZP_00989789.1| ABC-type sugar transport system, periplasmic component [Vibrio
splendidus 12B01]
gi|84378292|gb|EAP95150.1| ABC-type sugar transport system, periplasmic component [Vibrio
splendidus 12B01]
Length = 415
Score = 37.5 bits (85), Expect = 2.3, Method: Composition-based stats.
Identities = 33/298 (11%), Positives = 71/298 (23%), Gaps = 31/298 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRF-ADTGWTDIAATTAMTSVIL---EEILGYK 56
M + + +RF + V+L E+ G K
Sbjct: 1 MKFKTLALSCAVALGLGTTAANAADKEIRFDGFPDFDSS------LKVLLPDFEKETGIK 54
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ + L I +E+ + + L
Sbjct: 55 VDYLMNNHGDHHTKLTTN------LATGSGAGDVIVVDVEKIGPFVGSGGLVNLSENYGA 108
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ Y + ++ G D+ +E +
Sbjct: 109 DKY--EERFAPYAWAQGKGADGDMYGIPVDLGPGVMYYRTDVFEKAGID------VEEAI 160
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
S I ++ V L + + +P GE + + + VV S+
Sbjct: 161 KDWDSYIAAGEKLKEQNVQLIASAADVAQAIIFTTVPEGEGLYFDKDGN--PVVTSERFV 218
Query: 237 KCPNISRLLKNIKFSVALENEMMKLIL--NNKQDRQFVGRTMLRTHPDLLKNWLIGVT 292
+++ +++ + + N + L H L NW+ T
Sbjct: 219 HAFEVAKEIRDKGLDGRILAWSNEWYEGFRNGTFATQLSGAWLLGH---LNNWIAPET 273
>gi|302553444|ref|ZP_07305786.1| ABC transporter substrate-binding protein [Streptomyces
viridochromogenes DSM 40736]
gi|302471062|gb|EFL34155.1| ABC transporter substrate-binding protein [Streptomyces
viridochromogenes DSM 40736]
Length = 448
Score = 37.5 bits (85), Expect = 2.3, Method: Composition-based stats.
Identities = 35/293 (11%), Positives = 75/293 (25%), Gaps = 34/293 (11%)
Query: 1 MYKILAV--CLFLTTFSISYARDADSCT----PVRFADTGWTDIAATTAMT--------S 46
M + + L + DA++ + V T T
Sbjct: 1 MKRTAVAMSAVVLLLPLSACGGDAEAGSGSTVTVTVGYQSRTINTVTAGTLLRSLGSFEK 60
Query: 47 VI--LEEILGYKTNIK-LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLV 103
+ L + + YK + + + IDI +P L +LV
Sbjct: 61 QLNSLHDGVHYKVDWQDYATGAPITAQMTAGKIDIGSMGDFPLLINAARGKQLNSPTRLV 120
Query: 104 AENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK 163
+ + L + S +D+ K++ + G I+ N
Sbjct: 121 SVTGYNLRGGLNTVVTAPGSQLASLKDLKG--KKVSTSVGSAADGTLVRALQRAGIDPNT 178
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
K + A + F++W + + +
Sbjct: 179 GIQKLNQQPSVGASALAAGSADALSQ-----FVAWP--GLLAYQDKAKAIYDGARLDLPT 231
Query: 224 ASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQF-VGRT 275
T R D+ + P + + + E + + ++ D V +
Sbjct: 232 FHGVT-AREDFAKERPAVLDAF------LKAQAEATEYLDDHPVDAAEKVAKA 277
>gi|52079352|ref|YP_078143.1| aliphatic sulfonate ABC transporter binding lipoprotein [Bacillus
licheniformis ATCC 14580]
gi|52784715|ref|YP_090544.1| SsuA [Bacillus licheniformis ATCC 14580]
gi|319646863|ref|ZP_08001092.1| SsuA protein [Bacillus sp. BT1B_CT2]
gi|52002563|gb|AAU22505.1| aliphatic sulfonate ABC transporter (binding lipoprotein) [Bacillus
licheniformis ATCC 14580]
gi|52347217|gb|AAU39851.1| SsuA [Bacillus licheniformis ATCC 14580]
gi|317391451|gb|EFV72249.1| SsuA protein [Bacillus sp. BT1B_CT2]
Length = 329
Score = 37.5 bits (85), Expect = 2.3, Method: Composition-based stats.
Identities = 27/198 (13%), Positives = 55/198 (27%), Gaps = 19/198 (9%)
Query: 51 EILGYKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQG 109
G K P F L +D P + A +
Sbjct: 58 AKEGIKVKWTEFQSGPPQFEGLAADKLDFSQVGNSPVIAGQAAGIDFK------------ 105
Query: 110 AKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
+ L+ + + + K+L K + G+ G + +I+
Sbjct: 106 -EIGLSQDGLKANGILVKKGSGIDDIKDLKGKKVAVAKGSSGFDFLYKVIDKAGLKPTDV 164
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV 229
+I+ + + + WEP + + + +T+
Sbjct: 165 NIIQLQPDEAMP----AFDSGAIDAWSIWEPFLSLKTIKSDADILVDGEQIDKYSPGFTL 220
Query: 230 VRSDYLDKCP-NISRLLK 246
VRS + ++ P + R LK
Sbjct: 221 VRSKFAEQHPDEVIRFLK 238
>gi|289191692|ref|YP_003457633.1| phosphate binding protein [Methanocaldococcus sp. FS406-22]
gi|288938142|gb|ADC68897.1| phosphate binding protein [Methanocaldococcus sp. FS406-22]
Length = 273
Score = 37.5 bits (85), Expect = 2.3, Method: Composition-based stats.
Identities = 22/207 (10%), Positives = 54/207 (26%), Gaps = 11/207 (5%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMT----SVILEEILGYK 56
M K L + + + + V+ A + +++ K
Sbjct: 1 MRKFLGIFIGILVVLCLCGCINSNKETVKEEKITLAGGTALVPIMEEAGKEFMKKHPNVK 60
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWY-----PSLEKFIAPYLEEGSIKLVAENLQGAK 111
+ + + +DI M + Y + N +
Sbjct: 61 VIVSGGGSGFGIKQVGEGYVDIGMAGRDLKPEEKEKYPNLKVYRIGYDGVAIVVNPKNPI 120
Query: 112 YMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
L V + K+ IY +P + ++ + ++ +
Sbjct: 121 DGLTKEQVKKIFAGEITNWKEVGGKDAPINIYTRDPESGTRDTFWRLVLDKG-NITKKAI 179
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSW 198
+ AS ++I N I + + +
Sbjct: 180 VVASNGEMKAKI-AMDENGIGYLSVGY 205
>gi|226366242|ref|YP_002784025.1| ABC transporter substrate-binding protein [Rhodococcus opacus B4]
gi|226244732|dbj|BAH55080.1| putative ABC transporter substrate-binding protein [Rhodococcus
opacus B4]
Length = 476
Score = 37.5 bits (85), Expect = 2.3, Method: Composition-based stats.
Identities = 35/260 (13%), Positives = 65/260 (25%), Gaps = 32/260 (12%)
Query: 13 TFSISYARDADSCTPVRFADTGWTDIAATTAM---TSVILEEIL---------GYKTNIK 60
+ S+ + V T T LE+ L Y +
Sbjct: 21 SCSLEPSAGNGDAVTVVIGYQSKTINTVTAGTLLRAQGYLEQRLQDVTERTGTKYSVEWQ 80
Query: 61 LLAV------PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
+ + + + S + E + + N +GA M+
Sbjct: 81 DYDTGAPITAQMVAEKIDIGSMGDYPMLINGSRTQANPRSKTEI-VSVTGYNPEGALNMV 139
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
V A + K +G+ +G I + + A
Sbjct: 140 VVPPNSPATTLGDLAG-RKVSASVGSAGHGTLVQALDRAGIDPATGVEVLNQQPQVGSSA 198
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDY 234
E + + + F++W P + L G E+ V VVR Y
Sbjct: 199 LESGQVAALSQ---------FVAW-PGLLVFQDKAKLLYDGAELHTPTLHGV--VVRDVY 246
Query: 235 LDKCPNISRLLKNIKFSVAL 254
D+ P + +
Sbjct: 247 ADEHPEVLDAFLRAQLDATD 266
>gi|126172337|ref|YP_001048486.1| extracellular solute-binding protein [Shewanella baltica OS155]
gi|125995542|gb|ABN59617.1| extracellular solute-binding protein, family 1 [Shewanella baltica
OS155]
Length = 274
Score = 37.5 bits (85), Expect = 2.3, Method: Composition-based stats.
Identities = 32/276 (11%), Positives = 87/276 (31%), Gaps = 27/276 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYKT 57
+ +L + + + F++ A S ++ A T T+ + + +L E GYK
Sbjct: 8 IKSLLGLIVAASMFTVLPA---HSTEVIKLATTTSTEN---SGLLKELLPKFESESGYKV 61
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP--YLEEGSIKLVAENLQGAKYMLA 115
+ + + +D+ M + + KF+A +E I + G K
Sbjct: 62 QVIATGTGKALKLGEQGDVDLVMTHAPSAEAKFVADGFGVEPRGIMENDFVVLGPKN--- 118
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
D K+ ++ + G + + + L++ +
Sbjct: 119 --DPAKIRDSKNAEEAFAKIAKSGVPFISRGDNSGNHIKELEVWKAASVTPDFKGYTSVG 176
Query: 176 ELASFSQIRRDQRNNIPA----VFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVR 231
+ + + ++ F++++ L++ G + V +
Sbjct: 177 QGMGKTLLMANEMQGYTLSDRGTFVAYKT-----KLDLGVDFDGGKTLANP-YQVILINS 230
Query: 232 SDYLDKCPNISRLLKNIKFSVALENEMMK-LILNNK 266
+ Y D ++ + S ++ + + +
Sbjct: 231 AKYPDLNHKGAKAFSDWLISKEGQSMINNFKVDGEQ 266
>gi|192289992|ref|YP_001990597.1| urea ABC transporter periplasmic protein [Rhodopseudomonas
palustris TIE-1]
gi|192283741|gb|ACF00122.1| ABC transporter periplasmic binding protein, urea carboxylase
region [Rhodopseudomonas palustris TIE-1]
Length = 356
Score = 37.5 bits (85), Expect = 2.3, Method: Composition-based stats.
Identities = 30/271 (11%), Positives = 65/271 (23%), Gaps = 32/271 (11%)
Query: 1 MYKI-----LAVCLFLTTFSISYARDADSCT-----PVRFADTGWTDIAATTAMTSVILE 50
M K L + + S++ A A + W AA T +
Sbjct: 1 MRKTRFLSSLILAGSIVALSVAGASAAPKKDFKVAWSIYVGWMPW-GYAADTGIVKKWA- 58
Query: 51 EILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGA 110
+ G +K ++ L G
Sbjct: 59 DKYGITIEVKQFND--------------YVESINQYTAGSYDAVTITNMDALSIPAAGGV 104
Query: 111 KYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
+ K + + + + + + + +NK S K +
Sbjct: 105 DTTAVIVGDFSNGNDAVILKDKKDFAAIKGQKVNLVEFSVSHYLLARALESNKLSEKDVK 164
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
++ S + + + ++W P + + GE V
Sbjct: 165 VVNTS----DADLAAAYKTADVTAVVTWNPIVSEILASPDAHKVFDSSQIPGEIMDLMVA 220
Query: 231 RSDYLDKCPNISRLLKNIKFSVALENEMMKL 261
+ + PN ++ L I + +M
Sbjct: 221 NTAVVKDNPNFAKALVGIWY--ETMAKMTAE 249
>gi|291278839|ref|YP_003495674.1| two-component system, chemotaxis family, sensor kinase CheA
[Deferribacter desulfuricans SSM1]
gi|290753541|dbj|BAI79918.1| two-component system, chemotaxis family, sensor kinase CheA
[Deferribacter desulfuricans SSM1]
Length = 694
Score = 37.5 bits (85), Expect = 2.4, Method: Composition-based stats.
Identities = 8/55 (14%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 251 SVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSRQLER 305
+ N+M +++++ + + + +L WL V +G+D ++
Sbjct: 566 TNEFTNKMNVMVVDDSATDRKIMKRLLNN-----TGWLNVVEITNGKDALAAIKN 615
>gi|296162613|ref|ZP_06845401.1| conserved hypothetical protein [Burkholderia sp. Ch1-1]
gi|295887162|gb|EFG66992.1| conserved hypothetical protein [Burkholderia sp. Ch1-1]
Length = 325
Score = 37.5 bits (85), Expect = 2.4, Method: Composition-based stats.
Identities = 20/195 (10%), Positives = 42/195 (21%), Gaps = 10/195 (5%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIA--ATTAMTSVILEEILGYKTNIK 60
++L V + A+DA +R + + L E L ++
Sbjct: 9 RLLFVVVLTGGSVGVGAQDAFPSKTIRIVVPFTPGGVNDVVARVLAAGLSEQLHQPVIVE 68
Query: 61 LLA-------VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
R + + + + + L + G ++M
Sbjct: 69 NRPGAGGDVGTMYVMRQPADGYVLLMTSNAVDISTAVKKKPAFDSTKDLQPISFVGTQWM 128
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
V+ F K PG + + +
Sbjct: 129 TLVSAPSFPPKNIQQLVAVAKSKPGNITCATPGPGTPHQLA-MQFFKHYAGIDLLMVPFQ 187
Query: 174 ASELASFSQIRRDQR 188
S A +
Sbjct: 188 GSAPALTDVMAGRVS 202
>gi|254447449|ref|ZP_05060915.1| succinyl-CoA synthetase alpha chain [gamma proteobacterium
HTCC5015]
gi|198262792|gb|EDY87071.1| succinyl-CoA synthetase alpha chain [gamma proteobacterium
HTCC5015]
Length = 290
Score = 37.5 bits (85), Expect = 2.4, Method: Composition-based stats.
Identities = 8/56 (14%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 244 LLKNIK-FSVALENEMMKLILNNKQDRQFVGRTMLRTHPDL-LKNWLIGVTTFDGQ 297
+ ++ F + E + ++ + ++ H D + +++ GVT G+
Sbjct: 188 FIDALQLFQDDPQTEAIVMVGEIGGTAEEEAAEFIKEHVDKPVVSYIAGVTAPKGK 243
>gi|83716789|ref|YP_438997.1| taurine ABC transporter periplasmic binding protein [Burkholderia
thailandensis E264]
gi|167615542|ref|ZP_02384177.1| taurine ABC transporter, periplasmic binding protein [Burkholderia
thailandensis Bt4]
gi|257142103|ref|ZP_05590365.1| taurine ABC transporter, periplasmic binding protein [Burkholderia
thailandensis E264]
gi|83650614|gb|ABC34678.1| taurine ABC transporter, periplasmic binding protein [Burkholderia
thailandensis E264]
Length = 336
Score = 37.5 bits (85), Expect = 2.4, Method: Composition-based stats.
Identities = 32/252 (12%), Positives = 66/252 (26%), Gaps = 21/252 (8%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-I 59
+ +IL F + A V A D A E+ G+K N
Sbjct: 3 LKRILVAAAFAVAAFSAVQSPAAWAETVNVAYQYGADPAKLAQ-AGAAYEKATGWKINWR 61
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ + +L + + I P + + + G L V
Sbjct: 62 RFDSGADVVAALASGDVQIGDVGQSPFTAAVSRGVPIQAVVLNA---ITGVSEALVVRG- 117
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+L K + + +L + + + +++
Sbjct: 118 ---------GAHIDKPADLVGKTIATPYASNCHYALLAALKHWGIDARRVKIVNLGP--- 165
Query: 180 FSQIRRDQRNNIPAVFLSWEPH-PINSDLNIHYLPGGEEISGFGEASVY-TVVRSDYLDK 237
++I + +W+P L E+ +G + VR D+
Sbjct: 166 -TEIVAAWERGVIDAAYTWDPALGRAKASGGKVLVDSAEVGKWGAPTFDLWAVRRDFAQA 224
Query: 238 CPNISRLLKNIK 249
P+ N+
Sbjct: 225 HPDFVSKFVNVT 236
>gi|237715511|ref|ZP_04545992.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262408521|ref|ZP_06085067.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294646519|ref|ZP_06724156.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
gi|294807548|ref|ZP_06766345.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC
1b]
gi|229444220|gb|EEO50011.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262353386|gb|EEZ02480.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|292638138|gb|EFF56519.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
gi|294445249|gb|EFG13919.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC
1b]
Length = 413
Score = 37.5 bits (85), Expect = 2.4, Method: Composition-based stats.
Identities = 11/59 (18%), Positives = 18/59 (30%), Gaps = 1/59 (1%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRF-ADTGWTDIAATTAMTSVILEEILGYKTN 58
M K L + FL A+ + W + A + + E G+K
Sbjct: 1 MKKNLFIFTFLLGAFSLSAQAQKQEKTITIEVQNNWNQVKADAPVVINLHELHAGFKVK 59
>gi|167037269|ref|YP_001664847.1| extracellular solute-binding protein [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|167040026|ref|YP_001663011.1| extracellular solute-binding protein [Thermoanaerobacter sp. X514]
gi|300914114|ref|ZP_07131430.1| extracellular solute-binding protein family 1 [Thermoanaerobacter
sp. X561]
gi|307724650|ref|YP_003904401.1| family 1 extracellular solute-binding protein [Thermoanaerobacter
sp. X513]
gi|320115686|ref|YP_004185845.1| family 1 extracellular solute-binding protein [Thermoanaerobacter
brockii subsp. finnii Ako-1]
gi|166854266|gb|ABY92675.1| extracellular solute-binding protein, family 1 [Thermoanaerobacter
sp. X514]
gi|166856103|gb|ABY94511.1| extracellular solute-binding protein, family 1 [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|300889049|gb|EFK84195.1| extracellular solute-binding protein family 1 [Thermoanaerobacter
sp. X561]
gi|307581711|gb|ADN55110.1| extracellular solute-binding protein family 1 [Thermoanaerobacter
sp. X513]
gi|319928777|gb|ADV79462.1| extracellular solute-binding protein family 1 [Thermoanaerobacter
brockii subsp. finnii Ako-1]
Length = 294
Score = 37.5 bits (85), Expect = 2.4, Method: Composition-based stats.
Identities = 26/207 (12%), Positives = 58/207 (28%), Gaps = 34/207 (16%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTG----WTDIAATTAMTSVIL---EEILGYK 56
+L L + FS++ + + + + T + + +L E+ GYK
Sbjct: 12 LLYSILLFSLFSLNGCTGSKTSEKISPGNRDVILATTTSTQDSGLLDYLLPIFEKETGYK 71
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPY-------LEEGSIKLVAENLQG 109
+ + K D+ + + + ++ + + +V +
Sbjct: 72 VKVVAVGTGQALEMGKRGEADVLLTHAPAAEKELVDNKDVINYQLVMHNDFIVVGPSEDP 131
Query: 110 AKYMLAVNDVGFALGIKSYQDIA---------KYKKELGAKIYGIEP-----------GN 149
A+ AV+ I K+ K GI+P G
Sbjct: 132 AQVKNAVSVEAAFQAIAEKGVPFVSRGDDSGTHKKELSLWKAAGIDPKGKSWYIESGTGM 191
Query: 150 EGNQRILDMINNNKFSLKGFRLIEASE 176
I + + +G L +
Sbjct: 192 GQTLLIANEKRAYTLTDRGTYLAYRDK 218
>gi|161504000|ref|YP_001571112.1| outer membrane protein X [Salmonella enterica subsp. arizonae
serovar 62:z4,z23:-- str. RSK2980]
gi|160865347|gb|ABX21970.1| hypothetical protein SARI_02093 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 171
Score = 37.5 bits (85), Expect = 2.4, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 27/130 (20%), Gaps = 2/130 (1%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M KI + + S + + V M L Y+ +
Sbjct: 1 MKKIACLSALAAVLAFSAGSAVAATSTVTGGYAQSDAQGVANKMNGFNL--KYRYEQDDN 58
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
L V +F + + Y A + + G Y
Sbjct: 59 PLGVIGSFTYTEKDRTNGAGDYNKGQYYGITAGPAYRLNDWASIYGVVGVGYGKFQTTDY 118
Query: 121 FALGIKSYQD 130
+
Sbjct: 119 PTYKHDTSDY 128
>gi|323691786|ref|ZP_08106043.1| extracellular solute-binding protein family 5 [Clostridium
symbiosum WAL-14673]
gi|323504152|gb|EGB19957.1| extracellular solute-binding protein family 5 [Clostridium
symbiosum WAL-14673]
Length = 567
Score = 37.5 bits (85), Expect = 2.5, Method: Composition-based stats.
Identities = 19/151 (12%), Positives = 44/151 (29%), Gaps = 18/151 (11%)
Query: 14 FSISYARDADSCTPVRFADTGWTDIAA----------------TTAMTSVILEEILGYKT 57
F +S + + V A+ G+ D +LE+ LG K
Sbjct: 383 FGLSSTANPEEAKKV-LAEAGYPDGEGFPTLQLSFYSDDNVKKIAEAIKEMLEQNLGIKV 441
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYL-EEGSIKLVAENLQGAKYMLAV 116
+ V + +++ ++ W ++ N +Y V
Sbjct: 442 EVSSADWAVFYSDVQSGNYEVAAMGWSADYVNPMSFLPLMYTDDVTNNGNYSNKEYDAIV 501
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEP 147
+ + + ++ K + + Y + P
Sbjct: 502 DQIKVEKDPVKFGELVKQADNIASSEYAVLP 532
>gi|317406384|gb|EFV86607.1| hypothetical protein HMPREF0005_05671 [Achromobacter xylosoxidans
C54]
Length = 337
Score = 37.5 bits (85), Expect = 2.5, Method: Composition-based stats.
Identities = 36/282 (12%), Positives = 77/282 (27%), Gaps = 38/282 (13%)
Query: 1 MYKILA----VCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYK 56
M + T + + A + VRFA G + ++ LG
Sbjct: 1 MKSLTTKLLFGLAAATLAATASADTTAAPAEVRFAWAGAPRVWVLGKADKS-FDQALGVP 59
Query: 57 TNIKLLAVP-VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
+K IDI P++ + E ++
Sbjct: 60 VKWVQFNTGADVLALFASKQIDIARFGSNPAVSGYAQGLPIEL---------------IS 104
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
V ++ + K K + + P + + +++ +L+
Sbjct: 105 VPEIITTAEQLVVRADIKDVKGIEGRTIAYPPNSTAQYALEALLDRGHADRAKVKLVPLK 164
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYT--VVRSD 233
++I + +W+P + ++ +Y VV D
Sbjct: 165 P----AEIVAAWKRGDIDGAYAWDPAKAQLVADGAHVVFSTGDLRKDGVLIYNNFVVSKD 220
Query: 234 YLDKCPN-ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGR 274
+ K P ++ LKN + K + +QD +
Sbjct: 221 FAAKYPQLVAAFLKNYQ----------KKVEEYRQDPERAAA 252
>gi|330824289|ref|YP_004387592.1| glycine betaine ABC transporter substrate-binding protein
[Alicycliphilus denitrificans K601]
gi|329309661|gb|AEB84076.1| substrate-binding region of ABC-type glycine betaine transport
system [Alicycliphilus denitrificans K601]
Length = 321
Score = 37.5 bits (85), Expect = 2.5, Method: Composition-based stats.
Identities = 35/254 (13%), Positives = 72/254 (28%), Gaps = 20/254 (7%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL 62
K+ + + + A T V +GWT A T + + G +K++
Sbjct: 7 KMAPLAAAVACVAGLAAPAHAQETKVALGMSGWTGFAPLTLADKAGIFKKNGLDVELKMI 66
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
+L +K I +++ + LAV +
Sbjct: 67 PQKDRHLALASKAIQ---CAATTVETHVAWNTNGVPIVQIFQMDKSYGADGLAVRNDV-- 121
Query: 123 LGIKSYQDIAKYKKELGAKIYG-IEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
K +L K G PG + + M++ N SLK +++
Sbjct: 122 ----------KGFADLKGKTVGVSAPGTAPHFGLAWMLSKNGMSLKDVKIVSLEPQP--- 168
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNI 241
+ + +++EP+ + N + +L P
Sbjct: 169 -AAQAFISGQNDAAMTYEPYLSSVRANPQAGKILATTLDYPMVMDTVGCDPAWLKANPKA 227
Query: 242 SRLLKNIKFSVALE 255
++ + N F
Sbjct: 228 AQAMANSYFQALEM 241
>gi|313200730|ref|YP_004039388.1| nmt1/thi5 like domain-containing protein [Methylovorus sp. MP688]
gi|312440046|gb|ADQ84152.1| NMT1/THI5 like domain protein [Methylovorus sp. MP688]
Length = 335
Score = 37.5 bits (85), Expect = 2.5, Method: Composition-based stats.
Identities = 30/201 (14%), Positives = 59/201 (29%), Gaps = 27/201 (13%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL----GYKTNIK 60
+AV F++S+ A++ P++ + W A V +E+ G
Sbjct: 16 MAVLAAGFCFTLSFTMAAEAAAPLKIGYSDWPGWVA----WQVAIEKGWFKEAGVDVKFD 71
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ + ID +L I N
Sbjct: 72 WFDYSASMNAFSAGKIDAVTVTNGDALVTAAGGAKNVMIIVTDYSNGNDMIVG------- 124
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
GIKS +D+ K G+E G + +L+ + L+
Sbjct: 125 -KPGIKSLKDLK-------GKKIGLELGLVEHLLLLNGLQKAGLKESDVTLVNTP----T 172
Query: 181 SQIRRDQRNNIPAVFLSWEPH 201
++ + + A +W+P+
Sbjct: 173 NETPQALASGDLAAIGAWQPN 193
>gi|94313711|ref|YP_586920.1| DL-methionine ABC transporter periplasmic-binding protein
[Cupriavidus metallidurans CH34]
gi|93357563|gb|ABF11651.1| DL-methionine transporter subunit ; periplasmic-binding component
of ABC superfamily [Cupriavidus metallidurans CH34]
Length = 270
Score = 37.5 bits (85), Expect = 2.5, Method: Composition-based stats.
Identities = 30/270 (11%), Positives = 65/270 (24%), Gaps = 24/270 (8%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+ K LA + A +R D + + ++ G +
Sbjct: 6 ISKTLAAATVALGIVAAGNAAAQE-QTIRVGTVSGPDAEVW-QVVQKVAKKN-GLNVKVV 62
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
V + + F + IK + Y
Sbjct: 63 EFNDYV--------QPNAALDAGDLDANSFQHQPYLDSQIKQRGYKMTSVGYTYISPLGI 114
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKF------SLKGFRLIEA 174
++ +KS +D+ + K E I + + E
Sbjct: 115 YSKNLKSSKDLPQGAKVAVPNDPSNENRALLLLAAQGAIKLKPGVGTNGVNATPLDVAEN 174
Query: 175 SELASFSQIRRD-QRNNIPAVFLS--WEPHPINSDLNIHYLPGGEEISGFGEASVYTVVR 231
+ ++ +P V + + + + L E A++ V
Sbjct: 175 PKKLKIVELDAAQLARALPDVAAAVINTNYALAAGLQPTKDAIALEDIHSPYANIIVVRT 234
Query: 232 SDYLDKCPNISRLLKNIKFSVALENEMMKL 261
D P + +L+ + + MK
Sbjct: 235 QD--KDKPWVKKLVAAYQ--SEEVRQFMKA 260
>gi|224582645|ref|YP_002636443.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|224467172|gb|ACN45002.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|323129139|gb|ADX16569.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Typhimurium str. 4/74]
gi|326622550|gb|EGE28895.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Dublin str. 3246]
Length = 173
Score = 37.5 bits (85), Expect = 2.5, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 28/130 (21%), Gaps = 2/130 (1%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M KI + + S + + V M+ L Y+ +
Sbjct: 3 MKKIACLSALAAVLAFSAGTAVAATSTVTGGYAQSDAQGVANKMSGFNL--KYRYEQDDN 60
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
L V +F + + Y A + + G Y
Sbjct: 61 PLGVIGSFTYTEKDRTNGAGDYNKGQYYGITAGPAYRLNDWASIYGVVGVGYGKFQTTDY 120
Query: 121 FALGIKSYQD 130
+
Sbjct: 121 PTYKHDTSDY 130
>gi|194435030|ref|ZP_03067270.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Shigella dysenteriae 1012]
gi|194416726|gb|EDX32855.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Shigella dysenteriae 1012]
gi|332093818|gb|EGI98872.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Shigella boydii 5216-82]
gi|332096521|gb|EGJ01517.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Shigella dysenteriae 155-74]
Length = 257
Score = 37.5 bits (85), Expect = 2.5, Method: Composition-based stats.
Identities = 26/264 (9%), Positives = 63/264 (23%), Gaps = 18/264 (6%)
Query: 1 MYKILAVCLFLTTFSISYARDA-DSCTPVRFADTGWTDIAATTAM--TSVILEEILGYKT 57
M + S + A +A + + + T AM + ++ G
Sbjct: 1 MARKWLNLFAGAALSFAVAGNALADEGKITV----FAAASLTNAMQDIATQYKKEKGVDV 56
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+ R ++ + + +K++ +++ +I + ++ V
Sbjct: 57 VSSFASSSTLARQIEAGAP---ADLFISADQKWMDYAVDKKAIDTASRQTLLGNSLVVVA 113
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
+ L + I K + +
Sbjct: 114 PKASEQKDFIIDSTTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPA 173
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV------VR 231
N + + + + S E+ E V V
Sbjct: 174 EDVRGALALVERNEAPLGIVYGSDAVASKGVKVVATFPEDSHKKVEYPVAVVEGHNNATV 233
Query: 232 SDYLD--KCPNISRLLKNIKFSVA 253
+ D K P + + K F+
Sbjct: 234 KAFYDYLKGPQAAEIFKRYGFTTK 257
>gi|323484718|ref|ZP_08090077.1| hypothetical protein HMPREF9474_01828 [Clostridium symbiosum
WAL-14163]
gi|323401955|gb|EGA94294.1| hypothetical protein HMPREF9474_01828 [Clostridium symbiosum
WAL-14163]
Length = 567
Score = 37.5 bits (85), Expect = 2.6, Method: Composition-based stats.
Identities = 16/136 (11%), Positives = 44/136 (32%), Gaps = 3/136 (2%)
Query: 15 SISYARDADSCT--PVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLK 72
+++ A D ++ + ++ + E+ LG K + V + ++
Sbjct: 397 ALAEAGYPDGEGFPTIQLSFYSDDNVKKIAEAVKEMWEQNLGIKVEVSSADWAVFYSDVQ 456
Query: 73 NKGIDIFMGYWYPSLEKFIAPYL-EEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDI 131
++ W ++ N +Y V+ + + + ++
Sbjct: 457 AGNYEVAAMGWGADYINPMSFLPLMYTDDITNNANYSNPEYDAIVDQIKVEKDPEKFGEL 516
Query: 132 AKYKKELGAKIYGIEP 147
K E+ + YG+ P
Sbjct: 517 VKQADEIVSSEYGVLP 532
>gi|260853991|ref|YP_003227882.1| molybdate-binding periplasmic protein ModA [Escherichia coli
O26:H11 str. 11368]
gi|257752640|dbj|BAI24142.1| molybdate-binding periplasmic protein ModA [Escherichia coli
O26:H11 str. 11368]
Length = 257
Score = 37.5 bits (85), Expect = 2.6, Method: Composition-based stats.
Identities = 26/256 (10%), Positives = 63/256 (24%), Gaps = 14/256 (5%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP 65
+F+++ AD FA T A + + ++ G +
Sbjct: 8 LFAGAALSFAVAGNTLADEGKITVFAAASLT--NAMQDIATQY-KKEKGVDVVSSFASSS 64
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
R ++ + + +K++ +++ +I + ++ V
Sbjct: 65 TLARQIEAGAP---ADLFISADQKWMDYAVDKKAIDTASRQTLLGNSLVVVAPKASEQKD 121
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
+ + L + I K + +
Sbjct: 122 FTIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPAEDVRGALA 181
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV------VRSDYLD--K 237
N + + + + S E+ E V V + D K
Sbjct: 182 LVERNEAPLGIVYGSDAVASKGVKVVATFPEDSHKKVEYPVAVVEEHNNATVKAFYDYLK 241
Query: 238 CPNISRLLKNIKFSVA 253
P + + K F+
Sbjct: 242 GPQAAEIFKRYGFTTK 257
>gi|148254136|ref|YP_001238721.1| putative ABC transporter substrate binding protein [Bradyrhizobium
sp. BTAi1]
gi|146406309|gb|ABQ34815.1| putative ABC transporter, substrate binding protein [Bradyrhizobium
sp. BTAi1]
Length = 326
Score = 37.5 bits (85), Expect = 2.6, Method: Composition-based stats.
Identities = 41/283 (14%), Positives = 78/283 (27%), Gaps = 43/283 (15%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWT--DIAATTAMTSVILE-EILG--Y 55
M K + + + + + A + +R WT + M E LG Y
Sbjct: 2 MRKQVMLAVLASMALATSAGPTFAQQTIRVG---WTIPAEESKYWMMKRPTEFPDLGKTY 58
Query: 56 KTNIKLLA-VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSI-KLVAENLQGAKYM 113
++L +D + L+ + + V E G
Sbjct: 59 TIEWTQFQGTAPMTQALAAGALDCATQAPLSLSNGVVGGGLKAYIVAQHVYEKPGGFSVY 118
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
AV D I + K GI G Q +++ +
Sbjct: 119 WAVKDDSPIKTIADLKG----------KTVGISVIGGGTQGPFNLLLKQAGLDPAKDIKL 168
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV--- 230
+ ++ R +P G ++ EA V
Sbjct: 169 VEVGFAVAE--DALRQGRVDAVNMNQP----FAARAEAKGGTRKLFQLSEAMPNIVHILE 222
Query: 231 --RSDYLDKCPNIS------------RLLKNIKFSVALENEMM 259
R+D++DK P++ + L N ++ + +E+M
Sbjct: 223 ACRADFVDKNPDLVKAYVRDITAGMKKALANRDETLKVVSEVM 265
>gi|160932166|ref|ZP_02079557.1| hypothetical protein CLOLEP_01001 [Clostridium leptum DSM 753]
gi|156868768|gb|EDO62140.1| hypothetical protein CLOLEP_01001 [Clostridium leptum DSM 753]
Length = 354
Score = 37.5 bits (85), Expect = 2.6, Method: Composition-based stats.
Identities = 27/310 (8%), Positives = 73/310 (23%), Gaps = 67/310 (21%)
Query: 10 FLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGY------KTNIKLLA 63
+ + D + F WT T + + LGY + +I+
Sbjct: 42 AAGASEKTSSTDGQQLQTITF-VLDWTPNTNHTGIYVA---DKLGYFKEAGIQIDIQQPP 97
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQG----AKYMLAVNDV 119
+ + + +++ L+ N G + +
Sbjct: 98 EDGATALVATGKAQFGVDFQDYLAPAYVSDLPVTAVAALIQHNTSGIISLKEKGIQSPKD 157
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
++ + + +++ N+ L +
Sbjct: 158 LEGKTYATWDLPVEQ------------------ATMQNVVENDGGDWSKVNLASVTVTDV 199
Query: 180 FSQIRRDQRNNIPAVFLSW---EPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
S ++ + ++ +W D N Y + + + V +DYL+
Sbjct: 200 ISALQTNIDA--VWIYYAWDGIATQVKGLDTNYFYFKDINPVFDY--YTPVLVANNDYLE 255
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGR------------------TMLR 278
+ P ++ + K ++ + L
Sbjct: 256 QNPETAKAF---------LAAVAKGYEYAIENPEEAAEILCEADPTLDSEIVLSSQQWLA 306
Query: 279 T-HPDLLKNW 287
+ + W
Sbjct: 307 DQYKAEVDRW 316
>gi|291285082|ref|YP_003501900.1| Lipoprotein 28 precursor [Escherichia coli O55:H7 str. CB9615]
gi|209754448|gb|ACI75531.1| putative transport protein [Escherichia coli]
gi|209754454|gb|ACI75534.1| putative transport protein [Escherichia coli]
gi|290764955|gb|ADD58916.1| Lipoprotein 28 precursor [Escherichia coli O55:H7 str. CB9615]
gi|320639384|gb|EFX08999.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli O157:H7 str.
G5101]
gi|320655439|gb|EFX23374.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320661065|gb|EFX28501.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli O55:H7 str.
USDA 5905]
Length = 272
Score = 37.5 bits (85), Expect = 2.6, Method: Composition-based stats.
Identities = 21/231 (9%), Positives = 60/231 (25%), Gaps = 5/231 (2%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVT-FRSLKNKGIDI 78
+ + ++ + + + +E G + + + + N +D
Sbjct: 26 QSSSDEKHIKVGVINGAEQDV-AEVAKKVAKEKYGLDVELVGFSGSLLPNDATNNGELDA 84
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL 138
+ P LE+ + + A Y + + + I L
Sbjct: 85 NVFQHRPFLEQDNQTHGYKLVAVGNTFVFPMAGYSKKI-KTVAQIKEGATVAIPNDPTNL 143
Query: 139 GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
G + ++ + + + +Q+ R + V +
Sbjct: 144 GRALLLLQKEKLITLKEGKGLLPTALDITDNPRHLQIMELEGAQLPRVLDDPKVDVAIIS 203
Query: 199 EPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
+ + L+ E V +V + N+ L++ +
Sbjct: 204 TTYIQQTGLSPVNDSVFIEDKNSP--YVNILVAREDNKNAENVKEFLQSYQ 252
>gi|90021855|ref|YP_527682.1| ribonuclease III [Saccharophagus degradans 2-40]
gi|89951455|gb|ABD81470.1| flagellar basal body FlaE [Saccharophagus degradans 2-40]
Length = 804
Score = 37.5 bits (85), Expect = 2.6, Method: Composition-based stats.
Identities = 20/232 (8%), Positives = 45/232 (19%), Gaps = 25/232 (10%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
AV + + G TD ++LEE GY + +
Sbjct: 448 FAVSGGAGDAITVQGSTLSAAQTITAGGNGDTDAIVVGGAIDMVLEE--GYSLENAVPQL 505
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
F+ + + ++ +I N D
Sbjct: 506 TGIFQPFTANEFTPIVINAFDPTDQSTYNSATSMTIYDSLGNSHVMTQYFVKQDYDA--- 562
Query: 125 IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
+ + I++ L +
Sbjct: 563 -------------------TDPTSVPNHWVMYARIDDADVGDPDTTLPPPANTQPTLASY 603
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
N ++ + S+ G G ++ ++
Sbjct: 604 DVYFNEDGSLNTLLTSDMLISNW-TPVDADGNPNGALGPQNILAGGTQTVVE 654
>gi|289621543|emb|CBI52326.1| unnamed protein product [Sordaria macrospora]
Length = 329
Score = 37.5 bits (85), Expect = 2.7, Method: Composition-based stats.
Identities = 24/258 (9%), Positives = 59/258 (22%), Gaps = 37/258 (14%)
Query: 53 LGYKTNIKLLAVPVTFRSLKN-----------KGIDIFMGYWYPSLEKFIAPYLEEGSIK 101
+G+ T F++++ + L E + K
Sbjct: 17 MGFCTKNPPTPQEQAFKAMRAALESGANFWNAGEFYGSPDWNTQKLLAAYFKQYPEDAEK 76
Query: 102 LVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGN-QRILDMIN 160
+V K + + + I+ + +
Sbjct: 77 VV----LSVKGAFLFPQMIPDCSPAGLKRSIDACLADLDGTHKIDIFEPARVDPKVPLEE 132
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRNNIPAV---------FLSWEPHPI-------- 203
KF + S++ + W H +
Sbjct: 133 TLKFLEDEYVSKGVIGGIGLSEVSAATIRKAVKITKIAAVEVEISLWATHTLENGVAEAC 192
Query: 204 --NSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKL 261
I Y P G+ + ++ + D+ P +N ++ L +E+ +L
Sbjct: 193 AEFGIPLIAYSPIGQGMLTGQIKTLDDLAADDFRRHYPRFYP--ENFHLNIQLVSELNEL 250
Query: 262 ILNNKQDRQFVGRTMLRT 279
+ ++
Sbjct: 251 AKKKGFTPAQLAINWVKA 268
>gi|322386833|ref|ZP_08060457.1| amino acid ABC superfamily ATP binding cassette transporter,
membrane protein [Streptococcus cristatus ATCC 51100]
gi|321269115|gb|EFX52051.1| amino acid ABC superfamily ATP binding cassette transporter,
membrane protein [Streptococcus cristatus ATCC 51100]
Length = 542
Score = 37.5 bits (85), Expect = 2.7, Method: Composition-based stats.
Identities = 38/288 (13%), Positives = 86/288 (29%), Gaps = 46/288 (15%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFAD------TGWTDIAATTAMTSVILEEIL- 53
M K + L + A + +R WT + +
Sbjct: 22 MKKFILTLLTALLVCLGTLTVAQADDYLRIGMEAAYAPFNWTQDDDSNGAVKIEGTNQYA 81
Query: 54 -GYKTNI------KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAEN 106
GY + ++ P+ ++ N I + ++P E + +
Sbjct: 82 NGYDVQVAKKIAQEMGKEPLVVKTSWNGLIPALTSGKIDMIIAGMSPTAERKKEIAFSNS 141
Query: 107 LQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSL 166
++ ++ V G K+ +D K +Y
Sbjct: 142 YYTSEPVMLVRKDGNYANAKTLKDFKDAKITSQQGVY-----------------LYNLIS 184
Query: 167 KGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPI-----NSDLNIHYLPGGEEISGF 221
+ + + + F+Q+R+ + + ++S P + NS + G E+
Sbjct: 185 QLPGAKQETAMGDFAQMRQALESGVIDGYISERPEALTAEAANSKFKMIQFKEGFEVGEE 244
Query: 222 GEASVYTVVRSD---YLDKCPNISRLLKNIKFSVALENEMMKLILNNK 266
+AS+ +R D I+ K S + ++M ++ N+
Sbjct: 245 -DASIAVGMRKDDSRIEQANAAIA------KLSTDDQVQLMDQMIKNQ 285
>gi|229171147|ref|ZP_04298741.1| hypothetical protein bcere0006_2770 [Bacillus cereus MM3]
gi|228612325|gb|EEK69553.1| hypothetical protein bcere0006_2770 [Bacillus cereus MM3]
Length = 284
Score = 37.5 bits (85), Expect = 2.8, Method: Composition-based stats.
Identities = 38/260 (14%), Positives = 70/260 (26%), Gaps = 24/260 (9%)
Query: 1 MYKILAVCL-------FLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL 53
M KILA L L+ S VR TG A + E+
Sbjct: 1 MKKILAFALSAIVGISALSGCSSGDTGAGAKEKVVRIGVTGTDGNAW--EIVKGKAEKE- 57
Query: 54 GYKTNIKLLAVPVT-FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKY 112
G K + + T ++L + I++ LE+F + + + + Y
Sbjct: 58 GIKVKLIEFSDYTTPNKALADGDIELNSFQHVAFLEQFKKEHKLDITAVGTTQIAPMGLY 117
Query: 113 MLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPG------NEGNQRILDMINNNKFSL 166
+ A G + G I N L
Sbjct: 118 SEKYKKANEIPDGSEIAIPNDPTNQARALKLLDAAGLLKLKKDFGLFGDPSGIAENPKKL 177
Query: 167 KGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV 226
K +I + NN A +P + +L + + ++
Sbjct: 178 KITPVIAQQTPRVLKDVAASVINNGVAGQAGLDP-----AKDPIFLEDPKNENAKPYINI 232
Query: 227 YTVVRSDYLDKCPNISRLLK 246
+ D P + ++++
Sbjct: 233 FAARTKD--KDDPTLKKVIE 250
>gi|66048100|ref|YP_237941.1| ABC transporter, substrate-binding protein, aliphatic sulphonates
[Pseudomonas syringae pv. syringae B728a]
gi|63258807|gb|AAY39903.1| ABC transporter, substrate-binding protein, aliphatic sulphonates
[Pseudomonas syringae pv. syringae B728a]
Length = 321
Score = 37.5 bits (85), Expect = 2.8, Method: Composition-based stats.
Identities = 26/267 (9%), Positives = 68/267 (25%), Gaps = 45/267 (16%)
Query: 23 DSCTPVRFADTGWTDIA---ATTAMTSVILEEILGYKTNIKLLAV-PVTFRSLKNKGIDI 78
+R + + A ++ + E+ G K P L ID
Sbjct: 26 AQAEDLRIGYQKYGTLVLLKAKGSLEKRLAEQ--GVKVQWTEFPGGPQLLEGLNVGSIDF 83
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL 138
+ P A + + E + V +K +
Sbjct: 84 GVTGETP---PVFAQAAGADLLYVAYEPPAPTSEAILVPKDSPITSVKDLKG-------- 132
Query: 139 GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
K + G+ + ++ + + + + + R ++ W
Sbjct: 133 --KKVVLNKGSNVHYLLVKALEDAGLKYTDIQTVFLPP----ADARAAFERGSVDAWVIW 186
Query: 199 EPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEM 258
+P+ ++ + ++ +G + + + Y K P + + L
Sbjct: 187 DPYQAAAEKQLQARTL-KDGTGIVDNHQFYLATKPYAQKNPKVIQAL------------- 232
Query: 259 MKLILNNKQDRQFVGRTMLRTHPDLLK 285
+ + +PD +
Sbjct: 233 --------VEEVRAVGEWSKANPDEVT 251
>gi|152975751|ref|YP_001375268.1| aliphatic sulfonate ABC transporter periplasmic ligand-binding
protein [Bacillus cereus subsp. cytotoxis NVH 391-98]
gi|152024503|gb|ABS22273.1| aliphatic sulfonates family ABC transporter, periplsmic
ligand-binding protein [Bacillus cytotoxicus NVH 391-98]
Length = 331
Score = 37.5 bits (85), Expect = 2.8, Method: Composition-based stats.
Identities = 27/229 (11%), Positives = 61/229 (26%), Gaps = 24/229 (10%)
Query: 51 EILGYKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQG 109
E +G K P F ++ + +D P + A ++ +
Sbjct: 63 EKVGVKVKWTEFQSGPPYFEAIASNRLDFGEVGNSPVISAQAANIEF---TEIANTSYAR 119
Query: 110 AKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
+ V IK + K + G+ + + K
Sbjct: 120 KGTGILVKKDSKITSIKDLKG----------KKVAVAKGSSAFNLLYRALEKEGLDAKDV 169
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV 229
+I+ + + + + W+P L + + + + V
Sbjct: 170 GVIQLQPD----EAQPAFESGSVDAWAIWDPFISLHTLKKGAKVIVDGDTLNIPSPEFIV 225
Query: 230 VRSDYLDKCPN-ISRLL----KNIKFSVAL-ENEMMKLILNNKQDRQFV 272
R+ + + P + L K + + E + K D + V
Sbjct: 226 ARTKFAKEHPELVVTFLKVYEKARVWQESHFEEAVNIYASAKKIDPEIV 274
>gi|85119285|ref|XP_965612.1| hypothetical protein NCU02930 [Neurospora crassa OR74A]
gi|28927423|gb|EAA36376.1| hypothetical protein NCU02930 [Neurospora crassa OR74A]
Length = 329
Score = 37.5 bits (85), Expect = 2.8, Method: Composition-based stats.
Identities = 23/257 (8%), Positives = 59/257 (22%), Gaps = 37/257 (14%)
Query: 53 LGYKTNIKLLAVPVTFRSLKN-----------KGIDIFMGYWYPSLEKFIAPYLEEGSIK 101
+G+ T F++++ + L E + K
Sbjct: 17 MGFCTKNPPTPKEQAFKAMRAALESGANFWNAGEFYGSPDWNTQKLLAAYFKQYPEDAEK 76
Query: 102 LVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGN-QRILDMIN 160
+V K + + + I+ + +
Sbjct: 77 VV----LSVKGAFLFPQMIPDCSPAGLKRSIDACLADLDGTHKIDIFEPARIDPKVPLEE 132
Query: 161 NNKFSLKGFRLIEASELASFSQIRRDQRNNIPAV---------FLSWEPHPI-------- 203
K+ + S++ + W H +
Sbjct: 133 TLKYLEDEYVSKGIIGGIGLSEVSAATIRKAVKITKIAAVEVEISLWATHTLENGVAEAC 192
Query: 204 --NSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKL 261
I Y P G+ + ++ + D+ P +N ++ L +E+ +L
Sbjct: 193 AEFGIPLIAYSPIGQGMLTGQIKTLDDLAADDFRRHYPRFYP--ENFHLNIQLVSELNEL 250
Query: 262 ILNNKQDRQFVGRTMLR 278
+ ++
Sbjct: 251 AKKKGYTPAQLAINWVK 267
>gi|330961884|gb|EGH62144.1| sulfonate ABC transporter periplasmic sulfonate-binding protein
SsuA [Pseudomonas syringae pv. maculicola str. ES4326]
Length = 321
Score = 37.5 bits (85), Expect = 2.8, Method: Composition-based stats.
Identities = 24/268 (8%), Positives = 68/268 (25%), Gaps = 45/268 (16%)
Query: 23 DSCTPVRFADTGWTDIA---ATTAMTSVILEEILGYKTNIKLLAV-PVTFRSLKNKGIDI 78
+R + + A ++ + E+ G P L ID
Sbjct: 26 AQAEDLRIGYQKYGTLVLLKAKGSLEKRLAEQ--GVNVQWTEFPGGPQLLEGLNVGSIDF 83
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL 138
+ P A + + E + V +K +
Sbjct: 84 GVTGETP---PVFAQAAGADLLYVAYEPPAPTSEAILVPKDSPITSVKDLKG-------- 132
Query: 139 GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
K + G+ + ++ + + + + + R ++ W
Sbjct: 133 --KKVVLNKGSNVHYLLVKALEDAGLKYTDIQTVFLPP----ADARAAFERGSVDAWVIW 186
Query: 199 EPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEM 258
+P+ ++ + ++ +G + + + Y K P + +
Sbjct: 187 DPYQAAAEQQLKARTL-KDGTGIVDNHQFYLATKPYAQKNPKV-------------IQAL 232
Query: 259 MKLILNNKQDRQFVGRTMLRTHPDLLKN 286
++ + + HP+ +
Sbjct: 233 IEEVR--------AVGEWSKAHPEEVTK 252
>gi|311697024|gb|ADP99897.1| sulfate/tungstate uptake family ABC transporter, periplasmic
substrate-binding protein [marine bacterium HP15]
Length = 278
Score = 37.5 bits (85), Expect = 2.8, Method: Composition-based stats.
Identities = 17/110 (15%), Positives = 38/110 (34%), Gaps = 7/110 (6%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYKT 57
M K L + L T ++ A A + + A T T+ + + IL E+ G +
Sbjct: 11 MKKTLNLVLAAVT-TMGLAFSAHAEDYITLASTTSTES---SGLFDSILPKFEDATGIEV 66
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENL 107
+ + F + D + + ++F+ ++ +
Sbjct: 67 RVVAVGTGQAFEIARRGDADSLLVHDTAGEKRFVENGYATERADVMYNDF 116
>gi|317133320|ref|YP_004092634.1| aliphatic sulfonates family ABC transporter, periplasmic
ligand-binding protein [Ethanoligenens harbinense
YUAN-3]
gi|315471299|gb|ADU27903.1| aliphatic sulfonates family ABC transporter, periplasmic
ligand-binding protein [Ethanoligenens harbinense
YUAN-3]
Length = 350
Score = 37.5 bits (85), Expect = 2.8, Method: Composition-based stats.
Identities = 25/273 (9%), Positives = 65/273 (23%), Gaps = 14/273 (5%)
Query: 1 MYK----ILAVCLFLTTFSISYARDA---DSCTPVRFADTGWTDIAATTAMTS-VILEEI 52
M K ++ L LT A + + + + + + L +
Sbjct: 1 MKKKVIAVITALLMLTAIFSGCASQSPKSSAGQTITIGTSPYP-AWYVWYIAQDEGLFKK 59
Query: 53 LGYKTNIKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAK 111
G +K V + ++ +D+ ++ + + + N
Sbjct: 60 YGLNVTLKYFPVYSDSLQAFNTGKLDMLNIATCDTVAPYNQGVGFKIVMINDNSNGADGL 119
Query: 112 YMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
L K+ + G + + N
Sbjct: 120 VAKNQYKTIKDLKGKTVVTEYGTIEHFFLLKALESAGMTQDDVKYTNMTVNDSGTAMLAG 179
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVR 231
+ + + + S P + + + ++ V
Sbjct: 180 KVDAACVWEPSLSMALGSKDNHLLYSSADTPGLIPDLLVASNKLIKNNPNNVQNLINVWY 239
Query: 232 S--DYLDKCPN--ISRLLKNIKFSVALENEMMK 260
D+ +K P+ + + K S ++M
Sbjct: 240 DALDFYNKNPDKAAADMAKQANVSTTEMKKIMA 272
>gi|94988534|ref|YP_596635.1| iron(III)-binding protein [Streptococcus pyogenes MGAS9429]
gi|94992357|ref|YP_600456.1| Iron(III)-binding protein [Streptococcus pyogenes MGAS2096]
gi|94542042|gb|ABF32091.1| iron(III)-binding protein [Streptococcus pyogenes MGAS9429]
gi|94545865|gb|ABF35912.1| Iron(III)-binding protein [Streptococcus pyogenes MGAS2096]
Length = 348
Score = 37.5 bits (85), Expect = 2.8, Method: Composition-based stats.
Identities = 11/91 (12%), Positives = 21/91 (23%), Gaps = 3/91 (3%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLA 63
I+ + + I + DS + T EE G K +
Sbjct: 16 IIILAIVNVAMCIFSSSKKDSAKELVILTPN--SQTILTGTIPA-FEEKYGVKVRLIQGG 72
Query: 64 VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPY 94
L K + ++ +
Sbjct: 73 TGQLIDQLGRKDKPLNADIFFGGNYTQFESH 103
>gi|251781764|ref|YP_002996066.1| ABC transporter amino acid-binding protein [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
gi|242390393|dbj|BAH80852.1| ABC transporter amino acid-binding protein [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
Length = 528
Score = 37.5 bits (85), Expect = 2.8, Method: Composition-based stats.
Identities = 34/299 (11%), Positives = 87/299 (29%), Gaps = 43/299 (14%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFAD------TGWTDIAATTAMTSVILEE--- 51
M K++ CL A + +R WT A+ +V +E
Sbjct: 7 MKKLILSCLVALALLFGGMSQAQADQYLRVGMEAAYAPFNWTQDDASNG--AVPIEGTSQ 64
Query: 52 -ILGYKTNIKLLAVPVTFRSLK------NKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA 104
GY + + L I + ++P E +
Sbjct: 65 YANGYDVQVAKKIAKAMNKELLVVKTSWTGLIPALTSGKIDMIAAGMSPTDERRKEITFS 124
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKF 164
+ ++ +L V G G S + + G + + +
Sbjct: 125 NSYYTSEPVLVVAADGKYAGATSL-------DDFANAKVTAQQGVWHVNLLTQLKDAK-- 175
Query: 165 SLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPI---NSDLNIHYLPGGEEISGF 221
+ + FSQ+R+ + + ++S P + +D + + + +
Sbjct: 176 --------LQTPMGDFSQMRQALSSGVIDAYISERPEAMTAEAADSHFKMITLKKGFTVS 227
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNK---QDRQFVGRTML 277
+ V ++ ++++L+ + + +M ++ + + + + L
Sbjct: 228 ESDAAIAVGMKKNDNRIATVNQVLEGFSQTDRM--ALMDDMVTKQPMEKKAEDAKASFL 284
>gi|167042345|gb|ABZ07073.1| putative NLPA lipoprotein [uncultured marine crenarchaeote
HF4000_ANIW97M7]
Length = 344
Score = 37.5 bits (85), Expect = 2.8, Method: Composition-based stats.
Identities = 38/280 (13%), Positives = 81/280 (28%), Gaps = 45/280 (16%)
Query: 14 FSISYARDADSCTPVRFADTGWTDIAA-TTAMTSVILEEILGYKTNIK---LLAVPVTFR 69
S+ + D + +R A A + + I E +G + I+ + P
Sbjct: 21 TSLGNSSDQSNQNKIRVAFFPSISHAVPIVGLENGIFENGIGEQIQIETKLFDSGPQVIE 80
Query: 70 SLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQ 129
S+ + ID+ P++ F+ + ++ I L GA A + G++S +
Sbjct: 81 SIFARSIDVAYVGPGPTINGFLKSHGKDIRI------LAGAASGGASFIIQPDSGLESIE 134
Query: 130 DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRN 189
+ + + D+ G + +
Sbjct: 135 NFDGKRIASPQISNSQDVSLRYYLASNDL---KPIEKGGTVFVLNISNPDIYTLFAKGDI 191
Query: 190 NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
+ + W + I + ASV + R+DYL+ P I
Sbjct: 192 DGAWIPEPWATMLVQELDGIRLFNEEKLWPNEQFASVLLIARTDYLENNPEII------- 244
Query: 250 FSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLI 289
+ L++H + + +W+
Sbjct: 245 ------------------------QNWLKSHEETV-SWIN 259
>gi|323185083|gb|EFZ70449.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli 1357]
Length = 250
Score = 37.5 bits (85), Expect = 2.8, Method: Composition-based stats.
Identities = 26/254 (10%), Positives = 62/254 (24%), Gaps = 14/254 (5%)
Query: 8 CLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVT 67
+F+++ AD FA T A + + ++ G +
Sbjct: 3 AGAALSFAVAGNTLADEGKITVFAAASLT--NAMQDIATQY-KKEKGVDVVSSFASSSTL 59
Query: 68 FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKS 127
R ++ + + +K++ +++ +I ++ V +
Sbjct: 60 ARQIEAGAP---ADLFISADQKWMDYAVDKKAIDTATRQTLLGNSLVVVAPKASEQKDFT 116
Query: 128 YQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQ 187
+ L + I K + +
Sbjct: 117 IDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPAEDVRGALALV 176
Query: 188 RNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV------VRSDYLD--KCP 239
N + + + + S E+ E V V + D K P
Sbjct: 177 ERNEAPLGIVYGSDAVASKGVKVVATFPEDSHKKVEYPVAVVEGHNNATVKAFYDYLKGP 236
Query: 240 NISRLLKNIKFSVA 253
+ + K F+
Sbjct: 237 QAAEIFKRYGFTTK 250
>gi|323126570|gb|ADX23867.1| putative glutamine-binding periplasmic protein [Streptococcus
dysgalactiae subsp. equisimilis ATCC 12394]
Length = 522
Score = 37.5 bits (85), Expect = 2.8, Method: Composition-based stats.
Identities = 34/299 (11%), Positives = 87/299 (29%), Gaps = 43/299 (14%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFAD------TGWTDIAATTAMTSVILEE--- 51
M K++ CL A + +R WT A+ +V +E
Sbjct: 1 MKKLILSCLVALALLFGGMSQAQADQYLRVGMEAAYAPFNWTQDDASNG--AVPIEGTSQ 58
Query: 52 -ILGYKTNIKLLAVPVTFRSLK------NKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVA 104
GY + + L I + ++P E +
Sbjct: 59 YANGYDVQVAKKIAKAMNKELLVVKTSWTGLIPALTSGKIDMIAAGMSPTDERRKEITFS 118
Query: 105 ENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKF 164
+ ++ +L V G G S + + G + + +
Sbjct: 119 NSYYTSEPVLVVAADGKYAGATSL-------DDFANAKVTAQQGVWHVNLLTQLKDAK-- 169
Query: 165 SLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPI---NSDLNIHYLPGGEEISGF 221
+ + FSQ+R+ + + ++S P + +D + + + +
Sbjct: 170 --------LQTPMGDFSQMRQALSSGVIDAYISERPEAMTAEAADSHFKMITLKKGFTVS 221
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNK---QDRQFVGRTML 277
+ V ++ ++++L+ + + +M ++ + + + + L
Sbjct: 222 ESDAAIAVGMKKNDNRIATVNQVLEGFSQTDRM--ALMDDMITKQPMEKKAEDAKASFL 278
>gi|238023725|ref|YP_002907957.1| hypothetical protein bglu_2g02530 [Burkholderia glumae BGR1]
gi|237878390|gb|ACR30722.1| Hypothetical protein bglu_2g02530 [Burkholderia glumae BGR1]
Length = 630
Score = 37.5 bits (85), Expect = 2.8, Method: Composition-based stats.
Identities = 12/81 (14%), Positives = 24/81 (29%), Gaps = 7/81 (8%)
Query: 209 IHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNI-------KFSVALENEMMKL 261
+ L G G + +++ P++ L+N N M
Sbjct: 156 MQILSGKAGPDGQPPSDAQKAAAMQFVNDNPSLKTALQNTGALKSDGTIDTKKMNAFMGQ 215
Query: 262 ILNNKQDRQFVGRTMLRTHPD 282
+ N + ++ HPD
Sbjct: 216 VSTNLDQADSDIKDYMKKHPD 236
>gi|28872428|ref|NP_795047.1| sulfonate ABC transporter periplasmic sulfonate-binding protein
[Pseudomonas syringae pv. tomato str. DC3000]
gi|28855683|gb|AAO58742.1| sulfonate ABC transporter, periplasmic sulfonate-binding protein,
putative [Pseudomonas syringae pv. tomato str. DC3000]
gi|331017057|gb|EGH97113.1| sulfonate ABC transporter, periplasmic sulfonate-binding protein,
putative [Pseudomonas syringae pv. lachrymans str.
M302278PT]
Length = 321
Score = 37.5 bits (85), Expect = 2.8, Method: Composition-based stats.
Identities = 26/268 (9%), Positives = 69/268 (25%), Gaps = 45/268 (16%)
Query: 23 DSCTPVRFADTGWTDIA---ATTAMTSVILEEILGYKTNIKLLAV-PVTFRSLKNKGIDI 78
+R + + A ++ + E+ G K P L ID
Sbjct: 26 AQAEDLRIGYQKYGTLVLLKAKGSLEKRLAEQ--GVKVQWTEFPGGPQLLEGLNVGSIDF 83
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL 138
+ P A + + E + V +K +
Sbjct: 84 GVTGETP---PVFAQAAGADLLYVAYEPPAPTSEAILVPKDSPITSVKDLKG-------- 132
Query: 139 GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
K + G+ + ++ + + + + + R ++ W
Sbjct: 133 --KKVVLNKGSNVHYLLVKALEDAGLKYTDIQTVFLPP----ADARAAFERGSVDAWVIW 186
Query: 199 EPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEM 258
+P+ ++ + ++ +G + + + Y K P + +
Sbjct: 187 DPYQAAAEKQLQARTL-KDGTGIVDNHQFYLATKPYAQKNPKV-------------IQAV 232
Query: 259 MKLILNNKQDRQFVGRTMLRTHPDLLKN 286
++ + + HPD +
Sbjct: 233 IEEVR--------AVGEWSKAHPDEVTK 252
>gi|86144919|ref|ZP_01063251.1| ABC-type sugar transport system, periplasmic component [Vibrio sp.
MED222]
gi|85837818|gb|EAQ55930.1| ABC-type sugar transport system, periplasmic component [Vibrio sp.
MED222]
Length = 415
Score = 37.5 bits (85), Expect = 2.9, Method: Composition-based stats.
Identities = 33/298 (11%), Positives = 72/298 (24%), Gaps = 31/298 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRF-ADTGWTDIAATTAMTSVIL---EEILGYK 56
M + + +RF + V+L E+ G K
Sbjct: 1 MKFKTLALSCAVALGLGTTAANAADKEIRFDGFPDFDSS------LKVLLPDFEKETGIK 54
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ + L I +E+ + + L
Sbjct: 55 VDYLMNNHGDHHTKLTTN------LATGSGAGDVIVVDVEKIGPFVGSGGLVNLSENYGA 108
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ Y + ++ G D+ + +E +
Sbjct: 109 DKY--EERFAPYAWAQGKGADGDMYGIPVDLGPGVMYYRTDVFEKAGIN------VEDAI 160
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
S I ++ V L + + +P GE + + + VV S+
Sbjct: 161 KDWDSYIAAGEKLKEQNVQLIASAADVAQAIIFTTVPEGEGLYFDKDGN--PVVTSERFV 218
Query: 237 KCPNISRLLKNIKFSVALENEMMKLIL--NNKQDRQFVGRTMLRTHPDLLKNWLIGVT 292
+++ +++ + + N + L H L NW+ T
Sbjct: 219 HAFEVAKEIRDKGLDGRILAWSNEWYEGFRNGTFATQLSGAWLLGH---LNNWIAPET 273
>gi|330967524|gb|EGH67784.1| sulfonate ABC transporter periplasmic sulfonate-binding protein
[Pseudomonas syringae pv. actinidiae str. M302091]
Length = 321
Score = 37.1 bits (84), Expect = 2.9, Method: Composition-based stats.
Identities = 24/268 (8%), Positives = 69/268 (25%), Gaps = 45/268 (16%)
Query: 23 DSCTPVRFADTGWTDIA---ATTAMTSVILEEILGYKTNIKLLAV-PVTFRSLKNKGIDI 78
+R + + A ++ + E+ G K P L ID
Sbjct: 26 AQAEDLRIGYQKYGTLVLLKAKGSLEKRLAEQ--GVKVQWTEFPGGPQLLEGLNVGSIDF 83
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL 138
+ P A + + E + V +K +
Sbjct: 84 GVTGETP---PVFAQAAGADLLYVAYEPPAPTSEAILVPKDSPITSVKDLKG-------- 132
Query: 139 GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
K + G+ + ++ + + + + + R ++ W
Sbjct: 133 --KKVVLNKGSNVHYLLVKALEDAGLKYTDIQTVFLPP----ADARAAFERGSVDAWVIW 186
Query: 199 EPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEM 258
+P+ ++ + ++ +G + + + Y K P + +
Sbjct: 187 DPYQAAAEKQLQARTL-KDGTGIVDNHQFYLATKPYAQKNPKV-------------IQAL 232
Query: 259 MKLILNNKQDRQFVGRTMLRTHPDLLKN 286
++ + + +P+ +
Sbjct: 233 IEEVR--------AVGEWSKANPEEVTK 252
>gi|52079386|ref|YP_078177.1| ABC transport system protein [Bacillus licheniformis ATCC 14580]
gi|52784746|ref|YP_090575.1| YhcJ [Bacillus licheniformis ATCC 14580]
gi|319646833|ref|ZP_08001062.1| YhcJ protein [Bacillus sp. BT1B_CT2]
gi|52002597|gb|AAU22539.1| ABC transport system protein [Bacillus licheniformis ATCC 14580]
gi|52347248|gb|AAU39882.1| YhcJ [Bacillus licheniformis ATCC 14580]
gi|317391421|gb|EFV72219.1| YhcJ protein [Bacillus sp. BT1B_CT2]
Length = 272
Score = 37.1 bits (84), Expect = 2.9, Method: Composition-based stats.
Identities = 38/218 (17%), Positives = 59/218 (27%), Gaps = 31/218 (14%)
Query: 1 MYKILAVCLFLTTFSISYARDADS-CTPVRFADTGWTDIAATTAMTSVILE--EILGYKT 57
M K V +FL ++ ADS ++ +G T + + + E G K
Sbjct: 1 MKKFACVVIFLLLAAVIAGCAADSDAKTIKIGISGTD-----TRIWDFVKKKAEKEGLKL 55
Query: 58 NI-KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEE--------------GSIKL 102
I K ++L + ID F E S K
Sbjct: 56 EIVKYSDYVQPNQALASGDIDANAFQTISYFNAFKKERNLELSPVGTTIIAPMGIYSEKY 115
Query: 103 VAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN 162
+ +AV +G + +L G LD I N
Sbjct: 116 DSPGDIPNGAEIAVPSEATNMGRALLLLESAGLLQLKDGFDG--------NGTLDAIKEN 167
Query: 163 KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEP 200
LK + + + NN AV + P
Sbjct: 168 PKKLKITTVAAEQTPRVLADVAASVINNGIAVDAGFHP 205
>gi|298290860|ref|YP_003692799.1| taurine ABC transporter periplasmic protein [Starkeya novella DSM
506]
gi|296927371|gb|ADH88180.1| taurine ABC transporter, periplasmic binding protein [Starkeya
novella DSM 506]
Length = 339
Score = 37.1 bits (84), Expect = 3.0, Method: Composition-based stats.
Identities = 9/69 (13%), Positives = 19/69 (27%), Gaps = 1/69 (1%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
+I W+P +++ +G + +VR D+ P
Sbjct: 171 EIAAAFTRGDIDAAYVWDPALGKIKETGTVFASSADVAKWGAPTFDAWIVRKDFAKAHPE 230
Query: 241 ISRLLKNIK 249
I +
Sbjct: 231 IVAEFVKVT 239
>gi|229845544|ref|ZP_04465672.1| hypothetical protein CGSHi6P18H1_07903 [Haemophilus influenzae
6P18H1]
gi|229811560|gb|EEP47261.1| hypothetical protein CGSHi6P18H1_07903 [Haemophilus influenzae
6P18H1]
Length = 284
Score = 37.1 bits (84), Expect = 3.0, Method: Composition-based stats.
Identities = 16/175 (9%), Positives = 43/175 (24%), Gaps = 9/175 (5%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K L L + ++ +D D+ ++ T + T L++ +
Sbjct: 1 MKKTLVAALISSVILLTGCQDKDTEAKIK--QLNQTVAQLSAENTK--LKDQIEKTVPAI 56
Query: 61 LLAVPVTFRSLK-----NKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
+ F + D + L+ + L +
Sbjct: 57 FVENDEIFNQSEIIKHPKSKEDYQPEETKIEYSISTIKTNIDWLNDLLWKKLTENEETKN 116
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
++ F ++ + K + + + + S +
Sbjct: 117 ISREQFIARYQTAFEEDKKEAKETPSFGISHSMWTNFIGQKEKLATFAISFYDYE 171
>gi|15804253|ref|NP_290292.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli O157:H7
EDL933]
gi|15833849|ref|NP_312622.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli O157:H7 str.
Sakai]
gi|168748628|ref|ZP_02773650.1| lipoprotein NlpA [Escherichia coli O157:H7 str. EC4113]
gi|168753545|ref|ZP_02778552.1| lipoprotein NlpA [Escherichia coli O157:H7 str. EC4401]
gi|168759842|ref|ZP_02784849.1| lipoprotein NlpA [Escherichia coli O157:H7 str. EC4501]
gi|168766142|ref|ZP_02791149.1| lipoprotein NlpA [Escherichia coli O157:H7 str. EC4486]
gi|168772309|ref|ZP_02797316.1| lipoprotein NlpA [Escherichia coli O157:H7 str. EC4196]
gi|168779877|ref|ZP_02804884.1| lipoprotein NlpA [Escherichia coli O157:H7 str. EC4076]
gi|168785610|ref|ZP_02810617.1| lipoprotein NlpA [Escherichia coli O157:H7 str. EC869]
gi|168798691|ref|ZP_02823698.1| lipoprotein NlpA [Escherichia coli O157:H7 str. EC508]
gi|195936278|ref|ZP_03081660.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli O157:H7 str.
EC4024]
gi|208808331|ref|ZP_03250668.1| lipoprotein NlpA [Escherichia coli O157:H7 str. EC4206]
gi|208812171|ref|ZP_03253500.1| lipoprotein NlpA [Escherichia coli O157:H7 str. EC4045]
gi|208821318|ref|ZP_03261638.1| lipoprotein NlpA [Escherichia coli O157:H7 str. EC4042]
gi|209399316|ref|YP_002273190.1| lipoprotein NlpA [Escherichia coli O157:H7 str. EC4115]
gi|217325371|ref|ZP_03441455.1| lipoprotein NlpA [Escherichia coli O157:H7 str. TW14588]
gi|254795667|ref|YP_003080504.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli O157:H7 str.
TW14359]
gi|261225813|ref|ZP_05940094.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli O157:H7 str.
FRIK2000]
gi|261258858|ref|ZP_05951391.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli O157:H7 str.
FRIK966]
gi|23396773|sp|Q8XC50|NLPA_ECO57 RecName: Full=Lipoprotein 28; Flags: Precursor
gi|12518486|gb|AAG58856.1|AE005597_14 lipoprotein-28 [Escherichia coli O157:H7 str. EDL933]
gi|13364070|dbj|BAB38018.1| lipoprotein-28 [Escherichia coli O157:H7 str. Sakai]
gi|187771562|gb|EDU35406.1| lipoprotein NlpA [Escherichia coli O157:H7 str. EC4196]
gi|188016949|gb|EDU55071.1| lipoprotein NlpA [Escherichia coli O157:H7 str. EC4113]
gi|189002489|gb|EDU71475.1| lipoprotein NlpA [Escherichia coli O157:H7 str. EC4076]
gi|189359188|gb|EDU77607.1| lipoprotein NlpA [Escherichia coli O157:H7 str. EC4401]
gi|189364348|gb|EDU82767.1| lipoprotein NlpA [Escherichia coli O157:H7 str. EC4486]
gi|189369622|gb|EDU88038.1| lipoprotein NlpA [Escherichia coli O157:H7 str. EC4501]
gi|189374440|gb|EDU92856.1| lipoprotein NlpA [Escherichia coli O157:H7 str. EC869]
gi|189378712|gb|EDU97128.1| lipoprotein NlpA [Escherichia coli O157:H7 str. EC508]
gi|208728132|gb|EDZ77733.1| lipoprotein NlpA [Escherichia coli O157:H7 str. EC4206]
gi|208733448|gb|EDZ82135.1| lipoprotein NlpA [Escherichia coli O157:H7 str. EC4045]
gi|208741441|gb|EDZ89123.1| lipoprotein NlpA [Escherichia coli O157:H7 str. EC4042]
gi|209160716|gb|ACI38149.1| lipoprotein NlpA [Escherichia coli O157:H7 str. EC4115]
gi|209754450|gb|ACI75532.1| putative transport protein [Escherichia coli]
gi|209754452|gb|ACI75533.1| putative transport protein [Escherichia coli]
gi|209754456|gb|ACI75535.1| putative transport protein [Escherichia coli]
gi|217321592|gb|EEC30016.1| lipoprotein NlpA [Escherichia coli O157:H7 str. TW14588]
gi|254595067|gb|ACT74428.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli O157:H7 str.
TW14359]
gi|320191237|gb|EFW65887.1| Methionine ABC transporter substrate-binding protein [Escherichia
coli O157:H7 str. EC1212]
gi|326337288|gb|EGD61123.1| Methionine ABC transporter substrate-binding protein [Escherichia
coli O157:H7 str. 1044]
gi|326341660|gb|EGD65449.1| Methionine ABC transporter substrate-binding protein [Escherichia
coli O157:H7 str. 1125]
Length = 272
Score = 37.1 bits (84), Expect = 3.0, Method: Composition-based stats.
Identities = 20/231 (8%), Positives = 59/231 (25%), Gaps = 5/231 (2%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVT-FRSLKNKGIDI 78
+ + ++ + + + +E G + + + + N +D
Sbjct: 26 QSSSDEKHIKVGVINGAEQDV-AEVAKKVAKEKYGLDVELVGFSGSLLPNDATNNGELDA 84
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL 138
+ P LE+ + + A Y + + + I L
Sbjct: 85 NVFQHRPFLEQDNQTHGYKLVAVGNTFVFPMAGYSKKI-KTVAQIKEGATVAIPNDPTNL 143
Query: 139 GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
G + ++ + + + +Q+ R + V +
Sbjct: 144 GRALLLLQKEKLITLKEGKGLLPTALDITDNPRHLQIMELEGAQLPRVLDDPKVDVAIIS 203
Query: 199 EPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
+ + + I V +V + N+ L++ +
Sbjct: 204 TTY--IEQTGLSPVNDSVFIEDKNSPYVNILVAREDNKNAENVKEFLQSYQ 252
>gi|296132806|ref|YP_003640053.1| ABC transporter substrate-binding protein [Thermincola sp. JR]
gi|296031384|gb|ADG82152.1| ABC transporter substrate-binding protein [Thermincola potens JR]
Length = 346
Score = 37.1 bits (84), Expect = 3.0, Method: Composition-based stats.
Identities = 39/290 (13%), Positives = 79/290 (27%), Gaps = 43/290 (14%)
Query: 2 YKILAVCLFLTTFSISYARDADSCT-----------PVRFA---DTGWTDIAATTAMTSV 47
K +A L L F ++ A + +R + G+ +
Sbjct: 3 KKAIASVLVLFMFILAGCSTARNRDAGIGGNAKIPPKIRISLQYGIGYAPLQIMKE--KK 60
Query: 48 ILEEIL-GYKTNIKLLAVP-VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAE 105
+LE+ L G K K + V +L +D+ P L + + +I
Sbjct: 61 LLEKYLPGVKVEWKQMGTGGVIREALVKGDLDVGFMGIPPYLVAWDKGVDWKIAI----- 115
Query: 106 NLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFS 165
LA + G K+ + + +L M +
Sbjct: 116 -------ALASSPQGLQTNKKTVNSLKD---LGKNDKIAVPIPGSVQHILLAMAAEKELG 165
Query: 166 LKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSD---LNIHYLPGGEEISGFG 222
L + + + P + + NI + E+ G
Sbjct: 166 DAK-ALDKNLISMTHPDGATALISEAAISAHFTSPPYLFKELEAKNIKQIVDAEKAFGGE 224
Query: 223 EASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
+ + V + D+ P A N+ + + NN ++ +
Sbjct: 225 HSFLVGVTTKKFHDEYPLAYAAF------CAAVNDAIYFVNNNTREAAKI 268
>gi|13473799|ref|NP_105367.1| taurine transport system periplasmic protein [Mesorhizobium loti
MAFF303099]
gi|14024550|dbj|BAB51153.1| taurine transport system periplasmic protein [Mesorhizobium loti
MAFF303099]
Length = 337
Score = 37.1 bits (84), Expect = 3.0, Method: Composition-based stats.
Identities = 10/69 (14%), Positives = 22/69 (31%), Gaps = 1/69 (1%)
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV-YTVVRSDYLDKCPN 240
+I W+P + +++ +G + +VR+D+ K P
Sbjct: 169 EIAAAFARGDIDAAYVWDPALGQIKTTGKVVLDSSQVAAWGAPTFDAWIVRTDFAQKNPE 228
Query: 241 ISRLLKNIK 249
R +
Sbjct: 229 AVRDFVKVT 237
>gi|74311281|ref|YP_309700.1| molybdate transporter periplasmic protein [Shigella sonnei Ss046]
gi|82543183|ref|YP_407130.1| molybdate transporter periplasmic protein [Shigella boydii Sb227]
gi|187734069|ref|YP_001879413.1| molybdate transporter periplasmic protein [Shigella boydii CDC
3083-94]
gi|73854758|gb|AAZ87465.1| molybdate-binding periplasmic protein [Shigella sonnei Ss046]
gi|81244594|gb|ABB65302.1| molybdate-binding periplasmic protein [Shigella boydii Sb227]
gi|187431061|gb|ACD10335.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Shigella boydii CDC 3083-94]
gi|320175564|gb|EFW50659.1| Molybdenum ABC transporter, periplasmic molybdenum-binding protein
ModA [Shigella dysenteriae CDC 74-1112]
gi|320183998|gb|EFW58822.1| Molybdenum ABC transporter, periplasmic molybdenum-binding protein
ModA [Shigella flexneri CDC 796-83]
Length = 257
Score = 37.1 bits (84), Expect = 3.0, Method: Composition-based stats.
Identities = 27/256 (10%), Positives = 62/256 (24%), Gaps = 14/256 (5%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP 65
+F+++ AD FA T A + + +E G +
Sbjct: 8 LFAGAALSFAVAGNTLADEGKITVFAAASLT--NAMQDIATQYKKEK-GVDVVSSFASSS 64
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
R ++ + + +K++ +++ +I + ++ V
Sbjct: 65 TLARQIEAGAP---ADLFISADQKWMDYAVDKKAIDTASRQTLLGNSLVVVAPKASEQKD 121
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
+ L + I K + +
Sbjct: 122 FIIDSTTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPAEDVRGALA 181
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV------VRSDYLD--K 237
N + + + + S E+ E V V + D K
Sbjct: 182 LVERNEAPLGIVYGSDAVVSKGVKVVATFPEDSHKKVEYPVAVVEGHNNATVKAFYDYLK 241
Query: 238 CPNISRLLKNIKFSVA 253
P + + K F+
Sbjct: 242 GPQAAEIFKRYGFTTK 257
>gi|257486709|ref|ZP_05640750.1| short chain dehydrogenase/reductase family oxidoreductase
[Pseudomonas syringae pv. tabaci ATCC 11528]
gi|331010179|gb|EGH90235.1| short chain dehydrogenase/reductase family oxidoreductase
[Pseudomonas syringae pv. tabaci ATCC 11528]
Length = 244
Score = 37.1 bits (84), Expect = 3.1, Method: Composition-based stats.
Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 15/71 (21%)
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENE---------------MMKL 261
+ V+T R +++D CP LL +I + + + L
Sbjct: 22 KHFNAAGWEVFTASRQNWVDDCPWAEGLLNHIHLDLEDIDSVSESMAAIKDKLGGRLDAL 81
Query: 262 ILNNKQDRQFV 272
+ N +
Sbjct: 82 VNNAGVSPKTA 92
>gi|163732634|ref|ZP_02140079.1| taurine ABC transporter, periplasmic binding protein [Roseobacter
litoralis Och 149]
gi|161393994|gb|EDQ18318.1| taurine ABC transporter, periplasmic binding protein [Roseobacter
litoralis Och 149]
Length = 332
Score = 37.1 bits (84), Expect = 3.1, Method: Composition-based stats.
Identities = 21/200 (10%), Positives = 55/200 (27%), Gaps = 17/200 (8%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADT-GWTDIAATTAMTSVILEEILGYKTNI 59
+ K + ++S + + W + A S +E LG N
Sbjct: 2 IKKTACAFVAGAVMALSAQTATAADGEITVGYFLEWP-MPFLAAKASGAYDEALGMTVNW 60
Query: 60 KLLAVPVTFR-SLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
++ + + I + P F+ I+++ + ++ V
Sbjct: 61 VSFETGTAMSAAMASGDVQISVSQGVP---PFVVATSGGQDIQVIDVAVSYSENDNCVVA 117
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ S ++A K + G + L +++ L ++++ +
Sbjct: 118 EALEIDKDSAGELA-------GKKVAVPLGTAAHYGFLRQMDHFGVDLASLQVVDMAPPE 170
Query: 179 SFSQIRRDQRNNIPAVFLSW 198
+ W
Sbjct: 171 GAA----ALSQGAVDFACGW 186
>gi|330964541|gb|EGH64801.1| ABC transporter periplasmic substrate-binding protein [Pseudomonas
syringae pv. actinidiae str. M302091]
Length = 355
Score = 37.1 bits (84), Expect = 3.1, Method: Composition-based stats.
Identities = 30/280 (10%), Positives = 71/280 (25%), Gaps = 29/280 (10%)
Query: 3 KILAVCLFLTTFSISYARDADSCT------PVRFADTGWTDIAATTAMTSVILEEILGYK 56
++ + ++S + +A + W + + + G K
Sbjct: 5 RLFGLLTAGLLVALSLSANAAQKDHFNVCWTIYAGWMPWEYAGSQGIVDKWA--KKYGIK 62
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM-LA 115
++ L ++ L G + L
Sbjct: 63 IDVTQLND--------------YVESINQYTAGQFDGCTMTNMDALTIPAAGGVESTALI 108
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
V+D + K +L + + + + +++ K S K +++ S
Sbjct: 109 VSDFSNGNDGIVLKGTGKKVADLKGMNVNLVELSVSHYLLARALDSAKLSEKDLKVVNTS 168
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYL 235
+ I + +W P + GE VV + L
Sbjct: 169 ----DADISAAFNTDDVQAVTTWNPMLSDIKTKPGVTEVFNSSQIPGEIMDMMVVNTQTL 224
Query: 236 DKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRT 275
P + + L F + M +K + + +
Sbjct: 225 KDNPALGKALTGAWF--EVVALMNAKNAQSKAALEHMAKA 262
>gi|256752719|ref|ZP_05493568.1| extracellular solute-binding protein family 1 [Thermoanaerobacter
ethanolicus CCSD1]
gi|256748394|gb|EEU61449.1| extracellular solute-binding protein family 1 [Thermoanaerobacter
ethanolicus CCSD1]
Length = 294
Score = 37.1 bits (84), Expect = 3.1, Method: Composition-based stats.
Identities = 17/136 (12%), Positives = 43/136 (31%), Gaps = 14/136 (10%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFADTG----WTDIAATTAMTSVIL---EEILGYK 56
+L L + FS++ + + + + T + + +L E+ GYK
Sbjct: 12 LLYSILLFSLFSLNGCTGSKTSEKISPGNRDVILATTTSTQDSGLLDYLLPIFEKETGYK 71
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPY-------LEEGSIKLVAENLQG 109
+ + K D+ + + + ++ + + +V +
Sbjct: 72 VKVVAVGTGQALEMGKRGEADVLLTHAPAAEKELVDNKDVINYQLVMHNDFIVVGPSEDP 131
Query: 110 AKYMLAVNDVGFALGI 125
A+ AV+ I
Sbjct: 132 AQVKNAVSVEAAFQAI 147
>gi|262193562|ref|YP_003264771.1| hypothetical protein Hoch_0237 [Haliangium ochraceum DSM 14365]
gi|262076909|gb|ACY12878.1| Tetratricopeptide TPR_2 repeat protein [Haliangium ochraceum DSM
14365]
Length = 984
Score = 37.1 bits (84), Expect = 3.1, Method: Composition-based stats.
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 3/65 (4%)
Query: 230 VRSDYLDKCPNISRL-LKNIKFSVALEN-EMMKLILNNKQDRQFVGRTMLRTHP-DLLKN 286
R + ++ + + I ++A + E D + L HP D
Sbjct: 460 ARKELTEEDAAWADIVFAEIASTLATLSDEAAGAPQERLGDARKTADAWLEKHPDDAWVR 519
Query: 287 WLIGV 291
WL GV
Sbjct: 520 WLSGV 524
>gi|157146543|ref|YP_001453862.1| outer membrane protein X [Citrobacter koseri ATCC BAA-895]
gi|157083748|gb|ABV13426.1| hypothetical protein CKO_02304 [Citrobacter koseri ATCC BAA-895]
Length = 171
Score = 37.1 bits (84), Expect = 3.1, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 30/130 (23%), Gaps = 2/130 (1%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M KI + +IS + + V A M L Y+ +
Sbjct: 1 MKKIACLSALAAVLAISAGTAVAATSTVTGGYAQSDAQGAANKMNGFNL--KYRYEQDNN 58
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
L V +F + + Y A + + G Y
Sbjct: 59 PLGVIGSFTYTEKDRTNGAGDYNKTQYYGLTAGPAYRLNDWASIYGVVGVGYGKFQTAAT 118
Query: 121 FALGIKSYQD 130
A +
Sbjct: 119 PADKHDTSDY 128
>gi|15594984|ref|NP_212773.1| spermidine/putrescine ABC transporter,
spermidine/putrescine-binding periplasmic protein (potD)
[Borrelia burgdorferi B31]
gi|216264916|ref|ZP_03436908.1| spermidine/putrescine ABC transporter,
spermidine/putrescine-binding periplasmic protein
[Borrelia burgdorferi 156a]
gi|221217986|ref|ZP_03589453.1| spermidine/putrescine ABC transporter,
spermidine/putrescine-binding periplasmic protein
[Borrelia burgdorferi 72a]
gi|225549909|ref|ZP_03770870.1| spermidine/putrescine ABC transporter,
spermidine/putrescine-binding periplasmic protein
[Borrelia burgdorferi 118a]
gi|2688565|gb|AAB91528.1| spermidine/putrescine ABC transporter,
spermidine/putrescine-binding periplasmic protein (potD)
[Borrelia burgdorferi B31]
gi|215981389|gb|EEC22196.1| spermidine/putrescine ABC transporter,
spermidine/putrescine-binding periplasmic protein
[Borrelia burgdorferi 156a]
gi|221192292|gb|EEE18512.1| spermidine/putrescine ABC transporter,
spermidine/putrescine-binding periplasmic protein
[Borrelia burgdorferi 72a]
gi|225369368|gb|EEG98820.1| spermidine/putrescine ABC transporter,
spermidine/putrescine-binding periplasmic protein
[Borrelia burgdorferi 118a]
gi|312147739|gb|ADQ30398.1| spermidine/putrescine ABC transporter,
spermidine/putrescine-binding periplasmic protein
[Borrelia burgdorferi JD1]
Length = 348
Score = 37.1 bits (84), Expect = 3.2, Method: Composition-based stats.
Identities = 21/194 (10%), Positives = 52/194 (26%), Gaps = 23/194 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M KI + + LTTF+ + + + W + T + E + I
Sbjct: 1 MKKIFILIVILTTFACT------NKDTITLNVFNWAEYIDKTLLDQFEKENNIKINYEIF 54
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ + K + +++ I E N+
Sbjct: 55 HNNEEMMAKFNNTKNYYDIIVPSEYLIQELIDEGKIEKLDYSKLPNVT------------ 102
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
K+ + +Y + + + + ++GF ++ +
Sbjct: 103 -----KNITQNLTNLEHDPGNLYSVPAYWGLMGILYNKTKIDLNDMQGFDILFNKKYKKE 157
Query: 181 SQIRRDQRNNIPAV 194
+ ++NI
Sbjct: 158 ITMLDSPKDNIGVA 171
>gi|312144497|ref|YP_003995943.1| extracellular solute-binding protein family 1 [Halanaerobium sp.
'sapolanicus']
gi|311905148|gb|ADQ15589.1| extracellular solute-binding protein family 1 [Halanaerobium sp.
'sapolanicus']
Length = 276
Score = 37.1 bits (84), Expect = 3.2, Method: Composition-based stats.
Identities = 15/95 (15%), Positives = 35/95 (36%), Gaps = 6/95 (6%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYKT 57
M +I + F+++ + + + FA T T+ + + ++ EE G +
Sbjct: 1 MKRIYLPIFLILIFTLALTASSVAQDRLIFATTTSTEN---SGLLDELIPPFEETFGIRV 57
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIA 92
++ + N DI + + +FI
Sbjct: 58 DVISVGTGAAIELGANGDADIIFVHAPEAEAEFIE 92
>gi|322373784|ref|ZP_08048319.1| amino acid ABC transporter, amino acid-binding protein/permease
protein [Streptococcus sp. C150]
gi|321277156|gb|EFX54226.1| amino acid ABC transporter, amino acid-binding protein/permease
protein [Streptococcus sp. C150]
Length = 516
Score = 37.1 bits (84), Expect = 3.2, Method: Composition-based stats.
Identities = 31/281 (11%), Positives = 70/281 (24%), Gaps = 37/281 (13%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFAD------TGWT-DIAATTAMTSVILEE-I 52
M KI+ C A + +R WT D + A+ ++
Sbjct: 1 MKKIIVACFAALLLVFGGVSSAQADEYLRVGMEAAYAPFNWTQDDNSNGAVPIEGTKQYA 60
Query: 53 LGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQ---- 108
GY I + + + L + + + ++ +
Sbjct: 61 NGYDVQIAKKIAE------AQGKKPLVVKTAWTGLIPALTSSKIDMIVAGMSTTAERRKE 114
Query: 109 -GAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN----- 162
++ + K AK + + GN I + N +
Sbjct: 115 INFSDSYYTSEPVVVVDAKGKYANAKTIDDFKGAKITAQQGNYLVDLITQIPNVDKQTPM 174
Query: 163 -KFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
F L S+ + + + + +
Sbjct: 175 SDFGAMRQALSSGIIDGYISERPEALTAEA-----ASSTYKMIALKKGDGFKVSND---- 225
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLI 262
+ S+ +R D + ++++L S ++M I
Sbjct: 226 -DISIAVGLRKDDTETLTQVNKVLA--TISQDDRAKLMNHI 263
>gi|291534261|emb|CBL07374.1| ABC-type metal ion transport system, periplasmic component/surface
antigen [Megamonas hypermegale ART12/1]
Length = 264
Score = 37.1 bits (84), Expect = 3.3, Method: Composition-based stats.
Identities = 27/286 (9%), Positives = 67/286 (23%), Gaps = 37/286 (12%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K L + +R T + ++ L K ++
Sbjct: 1 MKKYTFFALLFIFSLFITGCGISTQKEIRIGATSGPHAEIAEIVAKEANKQGLNVKV-VE 59
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+L + +++ + E + + + +
Sbjct: 60 FSDYITPDLALSDGEVELAA-----YQHEPFLNNFNENKGTDLTSIGK----TIIMPMGI 110
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG---FRLIEASEL 177
++ I + DI+ +I +I+ +
Sbjct: 111 YSNKIHNMIDISNGATVSIPNDPTNAGRALMLLEKAGLIKLKNGLEFKSTVKDIIDNPKN 170
Query: 178 ASFSQIRRDQ---RNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDY 234
F ++ Q + + + +++ LN+ E A V R +
Sbjct: 171 LKFQELEAAQLPRSLEDVDIAVITMNYVMSAGLNVEKQGIFFEDKNEPLAVVILATRKE- 229
Query: 235 LDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
P+ ++L V +T + H
Sbjct: 230 DKDNPDYKKILDIYH--------------------SDVVKTFINEH 255
>gi|111115472|ref|YP_710090.1| spermidine/putrescine ABC transporter, binding periplasmic protein
[Borrelia afzelii PKo]
gi|216263536|ref|ZP_03435531.1| spermidine/putrescine ABC transporter,
spermidine/putrescine-binding periplasmic protein
[Borrelia afzelii ACA-1]
gi|110890746|gb|ABH01914.1| spermidine/putrescine ABC transporter, binding periplasmic protein
[Borrelia afzelii PKo]
gi|215980380|gb|EEC21201.1| spermidine/putrescine ABC transporter,
spermidine/putrescine-binding periplasmic protein
[Borrelia afzelii ACA-1]
Length = 348
Score = 37.1 bits (84), Expect = 3.3, Method: Composition-based stats.
Identities = 21/194 (10%), Positives = 50/194 (25%), Gaps = 23/194 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M KI + LTTF+ + + W + T + E + I
Sbjct: 1 MKKIFILIAILTTFACT------QKDTITLNVFNWAEYIDETLLDQFEKENNIKINYEIF 54
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ + K + +++ I E N+
Sbjct: 55 HNNEEMIAKFNTTKNYYDIIVPSEYLIQELIDEDKIEKLDYSKLPNVT------------ 102
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
K+ + +Y + + + + ++GF ++ +
Sbjct: 103 -----KNITQNLTNLEHDPGNLYSVPAYWGLMGILYNKTKIDLNDMQGFDILFNKKYNKE 157
Query: 181 SQIRRDQRNNIPAV 194
+ ++NI
Sbjct: 158 ITMLDSPKDNIGVA 171
>gi|311277389|ref|YP_003939620.1| lipoprotein, YaeC family [Enterobacter cloacae SCF1]
gi|308746584|gb|ADO46336.1| lipoprotein, YaeC family [Enterobacter cloacae SCF1]
Length = 272
Score = 37.1 bits (84), Expect = 3.3, Method: Composition-based stats.
Identities = 18/230 (7%), Positives = 55/230 (23%), Gaps = 5/230 (2%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKN-KGIDIF 79
+ ++ + + + +E G + + + N +D
Sbjct: 27 QSSDSKHIKVGVINGAEQDV-AEVAKKVAKEKYGLDVELVGFSGSLLPNDATNAGELDAN 85
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
+ P LE+ + + A Y + V +
Sbjct: 86 VFQHRPFLEQDNKAHNYQLVAVGNTFVFPMAGYSRKIKAVSELKDGATIAIPNDPTNLGR 145
Query: 140 AKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWE 199
A + + + + + +Q+ R + V +
Sbjct: 146 ALLLLQKEKL-ITLKPGKGLLPTSLDISDNPHKLNIMEMEGAQLPRVLDDPKVDVAIIST 204
Query: 200 PHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
+ + + + I V +V + N+ +++ +
Sbjct: 205 TY--IQQIGLSPVHDSVFIEDKNSPYVNIIVTRENNKDAENVKAFIQSYQ 252
>gi|220927503|ref|YP_002504412.1| extracellular solute-binding protein family 5 [Clostridium
cellulolyticum H10]
gi|219997831|gb|ACL74432.1| extracellular solute-binding protein family 5 [Clostridium
cellulolyticum H10]
Length = 538
Score = 37.1 bits (84), Expect = 3.3, Method: Composition-based stats.
Identities = 23/142 (16%), Positives = 38/142 (26%), Gaps = 3/142 (2%)
Query: 15 SISYARDADSCT--PVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLK 72
++ A D + F + A L+ LG + I+ V S K
Sbjct: 370 LLAEAGYPDGKGFPKITFGLNTGSGHEAVAEAIQQQLKTNLGIEVEIQAQEWNVFQESRK 429
Query: 73 NKGIDIFMGYW-YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDI 131
N DI W ++ L + A Y A+ D +
Sbjct: 430 NGLFDIARDGWIGDYMDPSTFMDLITSNNPQNNSKYNNAAYDKAIADARKETDPAKRMQL 489
Query: 132 AKYKKELGAKIYGIEPGNEGNQ 153
+ L + G+ P
Sbjct: 490 YHDAENLLMEEAGVAPLFFYTD 511
>gi|237749282|ref|ZP_04579762.1| phosphonate transport system substrate-binding protein
[Oxalobacter formigenes OXCC13]
gi|229380644|gb|EEO30735.1| phosphonate transport system substrate-binding protein
[Oxalobacter formigenes OXCC13]
Length = 285
Score = 37.1 bits (84), Expect = 3.3, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 6/84 (7%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAM-----TSVILEEILGY 55
M K+ ++C +S +A + P D A T + LE+ LG
Sbjct: 1 MKKLFSICCIAVIALLSAFANAANPDPSTLKVALLPDENAATIIKKNKALQDYLEKKLGK 60
Query: 56 KTN-IKLLAVPVTFRSLKNKGIDI 78
K I ++++ +D+
Sbjct: 61 KVQLIVTTDYSSMIEAMRHGRLDL 84
>gi|326780795|ref|ZP_08240060.1| aliphatic sulfonates family ABC transporter, periplasmic
ligand-binding protein [Streptomyces cf. griseus
XylebKG-1]
gi|326661128|gb|EGE45974.1| aliphatic sulfonates family ABC transporter, periplasmic
ligand-binding protein [Streptomyces cf. griseus
XylebKG-1]
Length = 342
Score = 37.1 bits (84), Expect = 3.3, Method: Composition-based stats.
Identities = 30/258 (11%), Positives = 69/258 (26%), Gaps = 44/258 (17%)
Query: 51 EILGYKTNI-KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQG 109
+ LGY+ + P ++ +DI P A + + A +
Sbjct: 60 DDLGYRVTWSTFTSGPPLLEAVSAGAVDIGGVGNTP---PVFAAGADSNITVVGATHGSS 116
Query: 110 AKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
A ++ V + K +L + G+ + +++ + ++
Sbjct: 117 AGEVIVVPEDSP----------LKTPAQLKGASIAVAQGSSAHFQLVASLRKAGLGIEDV 166
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPH--PINSDLNIHYLPGGEEISGFGEASVY 227
+L + + + W+P+ + + L GE + V
Sbjct: 167 KLNYLQPADALA----AFSRGKVDAWAIWDPYTSQVLRTTDARVLTTGEGVVNGLGFQVT 222
Query: 228 TVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKN- 286
+ V K I LL + + + HP+
Sbjct: 223 SPVSLGDRKKSRAIGDLLVRL----------------------ERAQKWVFEHPEEWAKV 260
Query: 287 WLIGVTTFDGQDPSRQLE 304
W T + ++
Sbjct: 261 W-AKETGLPYEVALDAVK 277
>gi|153832688|ref|ZP_01985355.1| ABC-type sugar transport system, periplasmic component [Vibrio
harveyi HY01]
gi|148871033|gb|EDL69917.1| ABC-type sugar transport system, periplasmic component [Vibrio
harveyi HY01]
Length = 415
Score = 37.1 bits (84), Expect = 3.3, Method: Composition-based stats.
Identities = 33/299 (11%), Positives = 75/299 (25%), Gaps = 31/299 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRF-ADTGWTDIAATTAMTSVIL---EEILGYK 56
M ++ +A T +RF + V+L E+ G K
Sbjct: 1 MKLKTLTLAMTAALGVAATVNAADETKIRFDGFPDFDSS------LKVLLPDFEKETGIK 54
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ + L I +E+ + + L
Sbjct: 55 VDYLMNNHGDHHTKLTTN------LATGSGAGDVIVVDVEKIGPFVASGGLVNLSENYGA 108
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ + ++ ++ + G D+ + +
Sbjct: 109 DKYAESFAPYAWAQGKGADGDVYGMPV--DLGPGVMYYRTDIFEKAGID------VNEAI 160
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
S I ++ V L + + +P GE + + + VV S+
Sbjct: 161 KDWDSYIAAGEKLKQQNVQLIASAADVAQAIIFTTVPEGEGLYFDKDGN--PVVTSERFV 218
Query: 237 KCPNISRLLKNIKFSVALENEMMKLIL--NNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
+++ +++ + + N + L H L NW+ T
Sbjct: 219 HAFEVAKEIRDKGLDGRILAWSNEWYEGFRNGTFATQLSGAWLLGH---LNNWIAPETA 274
>gi|296332332|ref|ZP_06874793.1| putative ABC transporter (binding lipoprotein) [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|305673611|ref|YP_003865283.1| putative ABC transporter binding lipoprotein [Bacillus subtilis
subsp. spizizenii str. W23]
gi|296150250|gb|EFG91138.1| putative ABC transporter (binding lipoprotein) [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|305411855|gb|ADM36974.1| putative ABC transporter (binding lipoprotein) [Bacillus subtilis
subsp. spizizenii str. W23]
Length = 276
Score = 37.1 bits (84), Expect = 3.4, Method: Composition-based stats.
Identities = 16/98 (16%), Positives = 30/98 (30%), Gaps = 3/98 (3%)
Query: 1 MYK-ILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M K +L + + S + + ++ +D A + E L + I
Sbjct: 1 MKKWLLCSFVVVLLVSFTACSPSAEHETIKIGIAE-SDEAIWNYIAKKAEEAGLDIQL-I 58
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEE 97
+ +L NK ID + F Y +
Sbjct: 59 PFSDYAESDIALANKEIDANAFQNISYFQSFTQKYKLK 96
>gi|291333812|gb|ADD93495.1| putative transcriptional regulator [uncultured marine bacterium
MedDCM-OCT-S04-C13]
Length = 313
Score = 37.1 bits (84), Expect = 3.4, Method: Composition-based stats.
Identities = 17/203 (8%), Positives = 61/203 (30%), Gaps = 11/203 (5%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M + + + + S R + +T+ + + ++ G + +I
Sbjct: 72 MVRSVLSAAEQAILPTAEFDPSSSSRIFRITASDYTESTLLPRLLQELFKQAPGIRLDIM 131
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
++F ++ +D+ + + + F +L + S + ++ ++
Sbjct: 132 T-PSDISFHDVERGKVDLVINRFDNLPQSFHKVHLWDDSFSCMVSAGNPVRHNWNLDSYL 190
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ K G+ P + +D + + + +
Sbjct: 191 AGKHVW-------VSKTGMGVGVGMTPDDVQRLGWVDEALTKQGAKRDISVFTRHYQ--- 240
Query: 181 SQIRRDQRNNIPAVFLSWEPHPI 203
+ + +++N+ S +
Sbjct: 241 AALLLAEQDNLIVTMPSMAAQMM 263
>gi|182440127|ref|YP_001827846.1| putative sulfonate-binding protein precursor [Streptomyces griseus
subsp. griseus NBRC 13350]
gi|178468643|dbj|BAG23163.1| putative sulfonate-binding protein precursor [Streptomyces griseus
subsp. griseus NBRC 13350]
Length = 342
Score = 37.1 bits (84), Expect = 3.4, Method: Composition-based stats.
Identities = 30/258 (11%), Positives = 69/258 (26%), Gaps = 44/258 (17%)
Query: 51 EILGYKTNI-KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQG 109
+ LGY+ + P ++ +DI P A + + A +
Sbjct: 60 DDLGYRVTWSTFTSGPPLLEAVSAGAVDIGGVGNTP---PVFAAGADSNITVVGATHGSS 116
Query: 110 AKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGF 169
A ++ V + K +L + G+ + +++ + ++
Sbjct: 117 AGEVIVVPEDSP----------LKTPAQLKGASIAVAQGSSAHFQLVASLRKAGLGIEDV 166
Query: 170 RLIEASELASFSQIRRDQRNNIPAVFLSWEPH--PINSDLNIHYLPGGEEISGFGEASVY 227
+L + + + W+P+ + + L GE + V
Sbjct: 167 KLNYLQPADALA----AFSRGKVDAWAIWDPYTSQVLRTTDARVLTTGEGVVNGLGFQVA 222
Query: 228 TVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKN- 286
+ V K I LL + + + HP+
Sbjct: 223 SPVSLGDRKKSRAIGDLLVRL----------------------ERAQKWVFEHPEEWAKV 260
Query: 287 WLIGVTTFDGQDPSRQLE 304
W T + ++
Sbjct: 261 W-AKETGLPYEVALDAVK 277
>gi|312137868|ref|YP_004005204.1| 3-hydroxyacyl-CoA dehydrogenase [Rhodococcus equi 103S]
gi|311887207|emb|CBH46516.1| 3-hydroxyacyl-CoA dehydrogenase [Rhodococcus equi 103S]
Length = 713
Score = 37.1 bits (84), Expect = 3.4, Method: Composition-based stats.
Identities = 4/38 (10%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 272 VGRTMLRTHPDL-LKNW-LIGVTTFDGQDPSRQLERFM 307
+ ++ +P+ ++ W + G G + +
Sbjct: 201 AAKAWIKDNPESGVQPWDVKGYKIPGGTPATPAFAANL 238
>gi|325673366|ref|ZP_08153058.1| 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase /
3-hydroxybutyryl-CoA epimerase [Rhodococcus equi ATCC
33707]
gi|325555956|gb|EGD25626.1| 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase /
3-hydroxybutyryl-CoA epimerase [Rhodococcus equi ATCC
33707]
Length = 713
Score = 37.1 bits (84), Expect = 3.4, Method: Composition-based stats.
Identities = 4/38 (10%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 272 VGRTMLRTHPDL-LKNW-LIGVTTFDGQDPSRQLERFM 307
+ ++ +P+ ++ W + G G + +
Sbjct: 201 AAKAWIKDNPESGVQPWDVKGYKIPGGTPATPAFAANL 238
>gi|222086914|ref|YP_002545448.1| taurine ABC transporter, periplasmic binding protein [Agrobacterium
radiobacter K84]
gi|221724362|gb|ACM27518.1| taurine ABC transporter, periplasmic binding protein [Agrobacterium
radiobacter K84]
Length = 335
Score = 37.1 bits (84), Expect = 3.5, Method: Composition-based stats.
Identities = 24/250 (9%), Positives = 55/250 (22%), Gaps = 23/250 (9%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI-K 60
+L + + + + + + + E+ G K + K
Sbjct: 6 RNLLTTTAVTVFVATFGSYASAADVTLNIGYQPIVEPSRVPQADGDY-EKATGAKISWHK 64
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
++ + IDI P E + + A LAV +
Sbjct: 65 FDGGADVVAAIASGSIDIGYVGSSPLAAAASRELPIEAIYVVGNISDAEA---LAVKGID 121
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+K + + + + + + ++
Sbjct: 122 KPEDLKGKKIATPFVSTSHYSLLTALKHWNIDPKTVQIL-----------------NLRP 164
Query: 181 SQIRRDQRNNIPAVFLSWEP-HPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+I W+P G+ G +V + D P
Sbjct: 165 PEIAAAWERGDLDGAYVWDPVLSQIKKNGKILATSGDVAKWGGPTFDAWIVSKKFADAHP 224
Query: 240 NISRLLKNIK 249
I +
Sbjct: 225 EIVTSFVQVT 234
>gi|221635737|ref|YP_002523613.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Thermomicrobium roseum DSM
5159]
gi|221158009|gb|ACM07127.1| ABC transporter, quaternary amine uptake transporter (QAT) family,
substrate-binding protein [Thermomicrobium roseum DSM
5159]
Length = 370
Score = 37.1 bits (84), Expect = 3.5, Method: Composition-based stats.
Identities = 27/149 (18%), Positives = 48/149 (32%), Gaps = 10/149 (6%)
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
AV +G L DI+ G K+ G+ G + L
Sbjct: 148 AVGTLGAILVRADLNDISSVPDLRGRKVAGVPGGTTTQDINAMVRKLYNMDLFTDTQFVQ 207
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPHPI------NSDLNIHYLPGGEEISGFGEASVYT 228
+ + N L WEP + + + +++SG V+
Sbjct: 208 ASAPPD--VANLIINKNVDAVLIWEPTTSRLTESGVAKILVTQQELWKQVSGSPNPQVHV 265
Query: 229 V--VRSDYLDKCPNISRLLKNIKFSVALE 255
V R D L+K P +++ + + +VA
Sbjct: 266 VYLARPDLLEKYPKLAKDIIEAQQTVADM 294
>gi|170724457|ref|YP_001758483.1| extracellular solute-binding protein [Shewanella woodyi ATCC
51908]
gi|169809804|gb|ACA84388.1| extracellular solute-binding protein, family 1 [Shewanella woodyi
ATCC 51908]
Length = 270
Score = 37.1 bits (84), Expect = 3.6, Method: Composition-based stats.
Identities = 15/96 (15%), Positives = 35/96 (36%), Gaps = 6/96 (6%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYKT 57
M + ++ ++ A A + ++ A T T+ + + +L E GYK
Sbjct: 1 MLNLKSIFSLALAATLVTAMPATAEEIIKLATTTSTEN---SGLLKNLLPKFEAETGYKV 57
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP 93
+ + + +D+ M + + KF+
Sbjct: 58 QVIATGTGKALKLARQGDVDLVMTHAPAAEAKFVNE 93
>gi|171059166|ref|YP_001791515.1| hypothetical protein Lcho_2485 [Leptothrix cholodnii SP-6]
gi|170776611|gb|ACB34750.1| conserved hypothetical protein [Leptothrix cholodnii SP-6]
Length = 320
Score = 37.1 bits (84), Expect = 3.7, Method: Composition-based stats.
Identities = 28/162 (17%), Positives = 43/162 (26%), Gaps = 10/162 (6%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVI---LEEILG--- 54
M K L L + A PV + +T A+ I L+E LG
Sbjct: 1 MKKTLITLLTALVTATGAQAQAWPNKPVTL-LVPFPAGGSTDAIARAISPKLQERLGATF 59
Query: 55 ---YKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAK 111
K + G IF+ P + + + A
Sbjct: 60 VVENKAGAGGTVGAAQAKRAAPDGYTIFVSSLGPFVIGPHLIKSAAYDPLKDFDYITVAV 119
Query: 112 YMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQ 153
V V K+ D+ + K K+ GN +
Sbjct: 120 QAPNVLAVPANSPHKTLADVIAFHKANPGKMSFASSGNGSSD 161
>gi|82776037|ref|YP_402384.1| molybdate transporter periplasmic protein [Shigella dysenteriae
Sd197]
gi|193065595|ref|ZP_03046662.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli E22]
gi|194429711|ref|ZP_03062228.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli B171]
gi|260842962|ref|YP_003220740.1| molybdate-binding periplasmic protein ModA [Escherichia coli
O103:H2 str. 12009]
gi|300822954|ref|ZP_07103089.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli MS 119-7]
gi|307313827|ref|ZP_07593444.1| molybdenum ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli W]
gi|309786439|ref|ZP_07681065.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Shigella dysenteriae 1617]
gi|331667123|ref|ZP_08367988.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli TA271]
gi|331676438|ref|ZP_08377135.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli H591]
gi|81240185|gb|ABB60895.1| molybdate-binding periplasmic protein [Shigella dysenteriae Sd197]
gi|192926780|gb|EDV81407.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli E22]
gi|194412270|gb|EDX28575.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli B171]
gi|257758109|dbj|BAI29606.1| molybdate-binding periplasmic protein ModA [Escherichia coli
O103:H2 str. 12009]
gi|300524495|gb|EFK45564.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli MS 119-7]
gi|306906467|gb|EFN36981.1| molybdenum ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli W]
gi|308925833|gb|EFP71314.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Shigella dysenteriae 1617]
gi|315059999|gb|ADT74326.1| molybdate transporter subunit [Escherichia coli W]
gi|323158808|gb|EFZ44821.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli E128010]
gi|323379442|gb|ADX51710.1| molybdenum ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli KO11]
gi|331065479|gb|EGI37372.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli TA271]
gi|331075931|gb|EGI47228.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli H591]
Length = 257
Score = 37.1 bits (84), Expect = 3.7, Method: Composition-based stats.
Identities = 26/264 (9%), Positives = 62/264 (23%), Gaps = 18/264 (6%)
Query: 1 MYKILAVCLFLTTFSISYARDA-DSCTPVRFADTGWTDIAATTAM--TSVILEEILGYKT 57
M + S + A +A + + + T AM + ++ G
Sbjct: 1 MARKWLNLFAGAALSFAVAGNALADEGKITV----FAAASLTNAMQDIATQYKKEKGVDV 56
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+ R ++ + + +K++ +++ +I ++ V
Sbjct: 57 VSSFASSSTLARQIEAGAP---ADLFISADQKWMDYAVDKKAIDTATRQTLLGNSLVVVA 113
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
+ L + I K + +
Sbjct: 114 PKASEQKDFIIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPA 173
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV------VR 231
N + + + + S E+ E V V
Sbjct: 174 EDVRGALALVERNEAPLGIVYGSDAVASKGVKVVATFPEDSHKKVEYPVAVVEGHNNATV 233
Query: 232 SDYLD--KCPNISRLLKNIKFSVA 253
+ D K P + + K F+
Sbjct: 234 KAFYDYLKGPQAAEIFKRYGFTTK 257
>gi|330830686|ref|YP_004393638.1| amino acid ABC transporter periplasmic-binding protein [Aeromonas
veronii B565]
gi|328805822|gb|AEB51021.1| ABC-type amino acid transporter, periplasmic-binding protein
[Aeromonas veronii B565]
Length = 254
Score = 37.1 bits (84), Expect = 3.7, Method: Composition-based stats.
Identities = 26/234 (11%), Positives = 65/234 (27%), Gaps = 28/234 (11%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWT-----DIAATTAM---TSVILEE-- 51
K ++ CL L ++ A P++ W + + + + +L
Sbjct: 1 MKWISCCLLLGLWAPMALAKALCPEPIQVGYDNWPPYHYYEADSPQEVRGYAAEVLTAVL 60
Query: 52 -ILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGA 110
+ K N L +++ ID+ M A +++
Sbjct: 61 TSMHCKVNYVELPWKRVLHEMEHGEIDMAMEANINDERARYA---------WFSDSYNPG 111
Query: 111 KYMLAVND--VGFALGIKSYQDIAKYKKELGAKIYGIEPG---NEGNQRILDMINNNKFS 165
+ +L + + S+ YG E +++ + + +
Sbjct: 112 RTLLWIRKGSHYPEQDLTSWLASGYSLGVTKEYFYGEEVMSLLARYAKQVSAVSDQQNYE 171
Query: 166 LKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEIS 219
I+ + + + +F S HP+ + + G+
Sbjct: 172 KLARGRIDGFLGDMLATPSALNKEGMSGLFTS---HPMVVSESPSFFMLGKRSF 222
>gi|332286297|ref|YP_004418208.1| putative ABC transporter periplasmic substrate-binding protein
[Pusillimonas sp. T7-7]
gi|330430250|gb|AEC21584.1| putative ABC transporter periplasmic substrate-binding protein
[Pusillimonas sp. T7-7]
Length = 336
Score = 37.1 bits (84), Expect = 3.8, Method: Composition-based stats.
Identities = 30/291 (10%), Positives = 70/291 (24%), Gaps = 33/291 (11%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVR------FADTGWTDIAATTAMTSVILEEIL-G 54
K + + V T + + + E L
Sbjct: 4 KKFMHYAAGALCAIMMAGAAHAETDEVTLARQFGIGYLPLTVMNINGLVQKQLKEAGLTD 63
Query: 55 YKTNI-KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
K + + +L + ++ G P++ + L M
Sbjct: 64 TKVTWSRFGSGSAANDALLSGQLNFAAGGTGPAI--ILWDKTRTNVKVHGVAALSSMPNM 121
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR-LI 172
L A IKS +D KI G+ L M K+ L ++ L
Sbjct: 122 LV----SIAPEIKSIEDFTD-----KDKIAMAGAGSSVQTVYLQMAAAKKWGLDNYKKLN 172
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEP----HPINSDLNIHYLPGGEEISGFGEASVYT 228
+ + + ++ + + +H + +I G +
Sbjct: 173 PLMVNLPHPEGLNAVLSGSAGIRSTFTSPPFQYMALENEGVHVVLNSYDIMGGPTTFLMV 232
Query: 229 VVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRT 279
+ + P + A+ + + + + ++
Sbjct: 233 WGTDKFRTENPKTYK---------AVLAALNEATDWINANPREAAELYVKD 274
>gi|317484001|ref|ZP_07942936.1| hypothetical protein HMPREF0179_00286 [Bilophila wadsworthia 3_1_6]
gi|316924728|gb|EFV45879.1| hypothetical protein HMPREF0179_00286 [Bilophila wadsworthia 3_1_6]
Length = 359
Score = 37.1 bits (84), Expect = 3.8, Method: Composition-based stats.
Identities = 31/263 (11%), Positives = 60/263 (22%), Gaps = 12/263 (4%)
Query: 1 MYKILAVCLFLTT-FSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
+ K + C+ L +IS + T VR A + ++ G I
Sbjct: 3 LRKFFSCCIALLLCLAISAPAFSAPLTKVRTAWMDEFEAFPIWYAKEKGWDKEAGLDLEI 62
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ + N Y + L + + + + + V
Sbjct: 63 LYFTSGMA---ILNALPSGEWQYAAIGAVPAMMGALRYNTYVIANADEEFLINRVLVRPD 119
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+K + + G ++ L +
Sbjct: 120 SPIAKVKGWNKDYPEVLGSPETVKGKTFLTTTVSSAHYALSVWLRVLGLTEKDIVLKNMD 179
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+Q + I W PH + + + V Y D P
Sbjct: 180 QAQALSAYEDGIGDGVCLWAPHAYVGEAKG-WKLVANPKLCGRSSPCVIVADRKYADANP 238
Query: 240 NI-SRLLKNIKFSVALENEMMKL 261
+ +R L M L
Sbjct: 239 EVTARFLSVY------MRAMNML 255
>gi|260219639|emb|CBA26484.1| hypothetical protein Csp_E35720 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 156
Score = 37.1 bits (84), Expect = 3.8, Method: Composition-based stats.
Identities = 14/96 (14%), Positives = 24/96 (25%), Gaps = 3/96 (3%)
Query: 12 TTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN--IKLLAVPVTFR 69
+ + VR T+ + + LE G KT + L V
Sbjct: 1 MATGLFAIGSTHAQNAVRVGSKIDTEGKLLGNIVVLALEAN-GNKTENKVSLGNTKVVRT 59
Query: 70 SLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAE 105
+L ID++ Y +
Sbjct: 60 ALLAGEIDLYPEYTGNGAFMLGDENSKAWKDLRAGY 95
>gi|309751690|gb|ADO81674.1| Hypothetical protein R2866_1763 [Haemophilus influenzae R2866]
Length = 284
Score = 37.1 bits (84), Expect = 3.8, Method: Composition-based stats.
Identities = 17/175 (9%), Positives = 43/175 (24%), Gaps = 9/175 (5%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K L L + ++ +D D+ ++ T + T L+E +
Sbjct: 1 MKKTLVAALISSVILLTGCQDKDTEAKIK--QLNQTVAQLSAENTK--LKEQIEKTVPAI 56
Query: 61 LLAVPVTFRSLK-----NKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
+ F + D + L+ + L +
Sbjct: 57 FVENDEIFNQSEIIKHPKSKEDYQPEETKIEYSISTIKTNIDWLNDLLWKKLTENEETKT 116
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
++ F ++ + K + + + + S +
Sbjct: 117 ISREQFVARYQTTFEEDKKEAKETPSFGISHSIWTNFIGQKEKLATFAISFYDYE 171
>gi|323705929|ref|ZP_08117500.1| NMT1/THI5 like domain protein [Thermoanaerobacterium xylanolyticum
LX-11]
gi|323534727|gb|EGB24507.1| NMT1/THI5 like domain protein [Thermoanaerobacterium xylanolyticum
LX-11]
Length = 338
Score = 36.7 bits (83), Expect = 3.8, Method: Composition-based stats.
Identities = 35/282 (12%), Positives = 67/282 (23%), Gaps = 29/282 (10%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTD---IAATT----AMTSVILEEILG 54
K+L L L S+ + + + A+ +E G
Sbjct: 4 RKLLIFTLILIFVLTSFLFTGCKAKEQKLTKINFIETVHSIFYAPYYVAVNKGFFKEE-G 62
Query: 55 YKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYML 114
+ I + E + Y E LV K
Sbjct: 63 LQLEITTAQGS---DKAATAVVSGQADIGLQGPETTVYVYKEGKQDYLVNFAQLTKKDGS 119
Query: 115 AVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEA 174
+ K++ G KI G PG + ++ + + +
Sbjct: 120 FLVGKKPEPNF-------KWENLKGKKIIGGRPGGMPEMTLEYILKEHGID--PKKDVNL 170
Query: 175 SELASFSQIRRDQRNNIPAVFLSWEPH-PINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
F+ + +EP Y+ +G R
Sbjct: 171 VTNLQFTATAGAFMRSDADYVALFEPTASQVESEKGGYIVASVGAAGHDVPYTTFNARKS 230
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRT 275
Y+ + P+I + F+ A+ M+ + V
Sbjct: 231 YIKEHPDIIQ-----HFTNAVYKGMLY---VQSHSSKQVAED 264
>gi|86132485|ref|ZP_01051079.1| FeS assembly protein SufB [Dokdonia donghaensis MED134]
gi|85817046|gb|EAQ38230.1| FeS assembly protein SufB [Dokdonia donghaensis MED134]
Length = 481
Score = 36.7 bits (83), Expect = 3.9, Method: Composition-based stats.
Identities = 17/158 (10%), Positives = 36/158 (22%), Gaps = 35/158 (22%)
Query: 160 NNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI- 218
++ E + I R W + +
Sbjct: 15 KEYEYGFFTDIETETFPVGLNEDIIRAISKKKEE--PQWMTDWRLEAYKVWQSMEEPDWA 72
Query: 219 -------------SGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNN 265
SV D P++ + K + S+ + M + ++
Sbjct: 73 NVNYEKPDFQSIAYYSAPKSVDP--NKTLDDVDPDLLAMYKKLGISIDEQKRMNNVAMDI 130
Query: 266 KQDRQFVGRTM-----------------LRTHPDLLKN 286
D V T ++ HP+L++
Sbjct: 131 VVDSVSVATTFKKTLAEKGIIFMSISEAIKEHPELVRK 168
>gi|213583694|ref|ZP_03365520.1| outer membrane protein X [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
Length = 134
Score = 36.7 bits (83), Expect = 3.9, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 28/130 (21%), Gaps = 2/130 (1%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M KI + + S + + V M+ L Y+ +
Sbjct: 1 MKKIACLSALAAVLAFSAGTAVAATSTVTGGYAQSDAQGVANKMSGFNL--KYRYEQDDN 58
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
L V +F + + Y A + + G Y
Sbjct: 59 PLGVIGSFTYTEKDRTNGAGDYNKGQYYGITAGPAYRLNDWASIYGVVGVGYGKFQTTDY 118
Query: 121 FALGIKSYQD 130
+
Sbjct: 119 PTYKHDTSDY 128
>gi|316932509|ref|YP_004107491.1| ABC transporter periplasmic-binding protein [Rhodopseudomonas
palustris DX-1]
gi|315600223|gb|ADU42758.1| ABC transporter periplasmic binding protein, urea carboxylase
region [Rhodopseudomonas palustris DX-1]
Length = 356
Score = 36.7 bits (83), Expect = 4.0, Method: Composition-based stats.
Identities = 29/268 (10%), Positives = 65/268 (24%), Gaps = 32/268 (11%)
Query: 1 MYKI-----LAVCLFLTTFSISYARDADSCT-----PVRFADTGWTDIAATTAMTSVILE 50
M K L + + S++ A A + W AA T +
Sbjct: 1 MRKTRLLSSLILAGSIVALSVAGASAAPKKDFKVAWSIYVGWMPW-GYAADTGIVKKWA- 58
Query: 51 EILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGA 110
+ G +K ++ L G
Sbjct: 59 DKYGITIEVKQFND--------------YVESINQYTAGSFDAVTITNMDALSIPAAGGV 104
Query: 111 KYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
+ K + + + + + + + +NK + K +
Sbjct: 105 DTTAVIVGDFSNGNDAVILKDKKDLAAIKGQKVNLVEFSVSHYLLARALESNKLTEKDIK 164
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
++ S + + + ++W P + + GE V
Sbjct: 165 VVNTS----DADLAAAYKTADVTAVVTWNPIVSEILSSPDAHKVFDSSQIPGEIMDLMVA 220
Query: 231 RSDYLDKCPNISRLLKNIKFSVALENEM 258
+ + PN ++ L I + +M
Sbjct: 221 NTAVVKDNPNFAKALVGIWY--ETMAKM 246
>gi|21673501|ref|NP_661566.1| ABC transporter, periplasmic substrate-binding protein [Chlorobium
tepidum TLS]
gi|21646608|gb|AAM71908.1| ABC transporter, periplasmic substrate-binding protein [Chlorobium
tepidum TLS]
Length = 285
Score = 36.7 bits (83), Expect = 4.1, Method: Composition-based stats.
Identities = 27/247 (10%), Positives = 55/247 (22%), Gaps = 20/247 (8%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRF----ADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
L + A A + + A T+ AA EE G K ++
Sbjct: 7 IFALVVGFCLWVSAFSAQAAERLLIYAGAASKPPTEEAAKAY------EEKTGVKVDVIF 60
Query: 62 LAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGF 121
+K ++P ++ EG V + L
Sbjct: 61 GGSGYVLSQMKLAKQG---DLYFPGSSDYMDKAKREG---DVFPETEKVIVYLVPAINVQ 114
Query: 122 ALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNN--KFSLKGFRLIEASELAS 179
+ + K G ++++ N L F+ + S
Sbjct: 115 KGNPHNIHTLKDLTKPGLRVAIANPEGVCVGAYAVEIVEKNFSPKELAAFKKNLVNYTGS 174
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+ + W I + +E+ + S +
Sbjct: 175 CEKTATAISLKQADAVIGWRVFQYWDPERIETIKLPKELIPRVGY--IPIAVSKFTHDRA 232
Query: 240 NISRLLK 246
+
Sbjct: 233 AAQAFID 239
>gi|89092821|ref|ZP_01165773.1| molybdate-binding protein [Oceanospirillum sp. MED92]
gi|89082846|gb|EAR62066.1| molybdate-binding protein [Oceanospirillum sp. MED92]
Length = 275
Score = 36.7 bits (83), Expect = 4.1, Method: Composition-based stats.
Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 4/95 (4%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSV--ILEEILGYKTN 58
M K +A + T + S +R A T T + + + + E+ K
Sbjct: 1 MKKWIAAAISTTILATSSVTAVAEEQIIRLATT--TSTYNSGLLDKLLPVFEKKHDAKVQ 58
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP 93
+ + R + +D+ M + S +KF+A
Sbjct: 59 VIAVGTGKALRMGQAGDVDVVMTHAPKSEQKFVAK 93
>gi|256021168|ref|ZP_05435033.1| molybdate transporter periplasmic protein [Shigella sp. D9]
gi|332282395|ref|ZP_08394808.1| molybdate transporter periplasmic protein [Shigella sp. D9]
gi|332104747|gb|EGJ08093.1| molybdate transporter periplasmic protein [Shigella sp. D9]
Length = 257
Score = 36.7 bits (83), Expect = 4.1, Method: Composition-based stats.
Identities = 27/256 (10%), Positives = 62/256 (24%), Gaps = 14/256 (5%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP 65
+F+++ AD FA T A + + +E G +
Sbjct: 8 LFAGAALSFAVAGNTLADEGKITVFAAASLT--NAMQDIATQYKKEK-GVDVVSSFASSS 64
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
R ++ + + +K++ +++ +I + ++ V
Sbjct: 65 TLARQIEAGAP---ADLFISADQKWMDYAVDKKAIDTASRQTLLGNSLVVVAPKASEQKD 121
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
+ L + I K + +
Sbjct: 122 FIIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPAEDVRGALA 181
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV------VRSDYLD--K 237
N + + + + S E+ E V V + D K
Sbjct: 182 LVERNEAPLGIVYGSDAVVSKGVTVVATFPEDSHKKVEYPVAVVEGHNNATVKAFYDYLK 241
Query: 238 CPNISRLLKNIKFSVA 253
P + + K F+
Sbjct: 242 GPQAAEIFKRYGFTTK 257
>gi|251789979|ref|YP_003004700.1| cationic amino acid ABC transporter periplasmic binding protein
[Dickeya zeae Ech1591]
gi|247538600|gb|ACT07221.1| cationic amino acid ABC transporter, periplasmic binding protein
[Dickeya zeae Ech1591]
Length = 249
Score = 36.7 bits (83), Expect = 4.1, Method: Composition-based stats.
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 4/51 (7%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFA----DTGWTDIAATTAMTSV 47
M K++ L T S +A + +RFA + + A +
Sbjct: 1 MKKLILAALLAGTAFSSMTFNAMAAETIRFAASATYPPFESLDAGNQIVGF 51
>gi|310780091|ref|YP_003968423.1| NMT1/THI5 like domain protein [Ilyobacter polytropus DSM 2926]
gi|309749414|gb|ADO84075.1| NMT1/THI5 like domain protein [Ilyobacter polytropus DSM 2926]
Length = 315
Score = 36.7 bits (83), Expect = 4.2, Method: Composition-based stats.
Identities = 36/287 (12%), Positives = 80/287 (27%), Gaps = 55/287 (19%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL--GYKTN 58
M K + + FL P+R + GW + + E+
Sbjct: 1 MKKTVLLFCFLIVLFTGC---KAYKEPIRISINGWP----PCELWYIAQEQGYFEDIPVE 53
Query: 59 IKLLAV-PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
I + + SL D+ + ++ E ++ + L V
Sbjct: 54 IIRFSTWSDSIASLYAGKTDLTHSTYLNTMR---NHNKGENGKIILTTSRIDGADGLVVK 110
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
+ KEL K +E + + + + S K ++I +
Sbjct: 111 NYI------------NDLKELKGKEIAVEVATDEHFLLYKALEKIGISDKDVKIISTTSE 158
Query: 178 ASFSQIRRDQRNNIPAVFLSWEP--HPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYL 235
+ +++P + + N E+I G+ +A + ++ L
Sbjct: 159 KAMKLFVA----GEVDACFTYDPFMNQAAKNGNGRVAITTEDIDGYNDA---IIAKTKTL 211
Query: 236 DKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPD 282
+K P ++L + + + +PD
Sbjct: 212 EKRPEDYKVL------------INAWYK---------AQEYVINNPD 237
>gi|303240320|ref|ZP_07326839.1| tetratricopeptide TPR_2 [Acetivibrio cellulolyticus CD2]
gi|302592230|gb|EFL61959.1| tetratricopeptide TPR_2 [Acetivibrio cellulolyticus CD2]
Length = 351
Score = 36.7 bits (83), Expect = 4.3, Method: Composition-based stats.
Identities = 7/54 (12%), Positives = 20/54 (37%)
Query: 231 RSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLL 284
+ ++ I ++ + + +M+ N+ + L+ HPD +
Sbjct: 145 NTTLVNNVNEIVDKIEKYYYPSKDLSSLMEANQNDNASLEKNLDEYLKEHPDDV 198
>gi|157157330|ref|YP_001461917.1| molybdate transporter periplasmic protein [Escherichia coli
E24377A]
gi|209918007|ref|YP_002292091.1| molybdate transporter periplasmic protein [Escherichia coli SE11]
gi|157079360|gb|ABV19068.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli E24377A]
gi|209911266|dbj|BAG76340.1| molybdate ABC transporter substrate binding component [Escherichia
coli SE11]
gi|323947080|gb|EGB43093.1| molybdate ABC transporter [Escherichia coli H120]
gi|324018541|gb|EGB87760.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli MS 117-3]
Length = 257
Score = 36.7 bits (83), Expect = 4.4, Method: Composition-based stats.
Identities = 26/256 (10%), Positives = 62/256 (24%), Gaps = 14/256 (5%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP 65
+F+++ AD FA T A + + ++ G +
Sbjct: 8 LFAGAALSFAVAGNTLADEGKITVFAAASLT--NAMQDIATQY-KKEKGVDVVSSFASSS 64
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
R ++ + + +K++ +++ +I + ++ V
Sbjct: 65 TLARQIEAGAP---ADLFISADQKWMDYAVDKKAIDTASRQTLLGNSLVVVAPKASEQKD 121
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
+ L + I K + +
Sbjct: 122 FIIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPAEDVRGALA 181
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV------VRSDYLD--K 237
N + + + + S E+ E V V + D K
Sbjct: 182 LVERNEAPLGIVYGSDAVVSKGVKVVATFPEDSHKKVEYPVAVVEGHNNATVKAFYDYLK 241
Query: 238 CPNISRLLKNIKFSVA 253
P + + K F+
Sbjct: 242 GPQAAEIFKRYGFTTK 257
>gi|304398677|ref|ZP_07380549.1| extracellular solute-binding protein family 5 [Pantoea sp. aB]
gi|304353888|gb|EFM18263.1| extracellular solute-binding protein family 5 [Pantoea sp. aB]
Length = 522
Score = 36.7 bits (83), Expect = 4.5, Method: Composition-based stats.
Identities = 14/93 (15%), Positives = 28/93 (30%), Gaps = 13/93 (13%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFAD-----------TGW--TDIAATTAMTSV 47
M I+ L LT A+ A + A G+ T + A T +
Sbjct: 1 MKTIIPSLLALTLAGAFTAQAATPKDTLVIAQSTDDADSFDPAKGFELTSVQAFTNIYQR 60
Query: 48 ILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFM 80
+++ ++K N+ + +
Sbjct: 61 LVQSDPQNPVDLKPTLATSWQPGSDNRSLTFEL 93
>gi|254303134|ref|ZP_04970492.1| possible nitrate/sulfonate/bicarbonate ABC superfamily ATP binding
cassette transporter binding protein [Fusobacterium
nucleatum subsp. polymorphum ATCC 10953]
gi|148323326|gb|EDK88576.1| possible nitrate/sulfonate/bicarbonate ABC superfamily ATP binding
cassette transporter binding protein [Fusobacterium
nucleatum subsp. polymorphum ATCC 10953]
Length = 345
Score = 36.7 bits (83), Expect = 4.5, Method: Composition-based stats.
Identities = 35/299 (11%), Positives = 79/299 (26%), Gaps = 53/299 (17%)
Query: 3 KILAVCLFLTTFSISYARDADSC-----------TPVRFADTGWTDIAATT---AMTSVI 48
KI + L + +D V G ++ A+
Sbjct: 9 KIFIGLIVLLFLAFGNYFKSDEKEEVVTKEKEAQKTVIIGLPGISNQTLEATGVALNKSY 68
Query: 49 LEEIL---GYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAE 105
+EE L GYK I + I + + + + + V
Sbjct: 69 IEEELEKIGYKAEIVYFQQAGPALNEALATDKIDIAMYGDLPITVLKSNGGDVKVFAV-- 126
Query: 106 NLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFS 165
+++M V + D K K+L K G + +++ +
Sbjct: 127 --DNSRFMYGV--------LVQNDDNIKTVKDLEGKKVIYGKGTVQQKFFKEILKKYNLN 176
Query: 166 LKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEAS 225
+ F + + A I + + +F + + +
Sbjct: 177 EEKF-ISINAIGADAQSIFSAKEADA--LFTFYYITLFMESKGMGKVIDSTIDKPEISTQ 233
Query: 226 VYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLL 284
V R+ +L + ++ VA+ + + + + +PD +
Sbjct: 234 SLVVGRTKFLQENEDV---------PVAIIKALER------------AKEFAKNNPDEV 271
>gi|323976463|gb|EGB71552.1| molybdate ABC transporter [Escherichia coli TW10509]
Length = 257
Score = 36.7 bits (83), Expect = 4.5, Method: Composition-based stats.
Identities = 27/264 (10%), Positives = 64/264 (24%), Gaps = 18/264 (6%)
Query: 1 MYKILAVCLFLTTFSISYARDA-DSCTPVRFADTGWTDIAATTAM--TSVILEEILGYKT 57
M + FS + A + + + + T AM + ++ G
Sbjct: 1 MARKWLNLFAGAAFSFAVAGNVLADEGKITV----FAAASLTNAMQDIATQYKKEKGVDV 56
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+ R ++ + + +K++ +++ +I + ++ V
Sbjct: 57 VSSFASSSTLARQIEAGAP---ADLFISADQKWMDYAVDKKAIDTASRQTLLGNSLVVVA 113
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
S + L + I K + +
Sbjct: 114 PKASEQKDFSIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPA 173
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV------VR 231
N + + + + S E+ E V V
Sbjct: 174 EDVRGALALVERNEAPLGIVYGSDAVASKGVKVVATFPEDSHKKVEYPVAVVEGHNNATV 233
Query: 232 SDYLD--KCPNISRLLKNIKFSVA 253
+ D K P + + K F+
Sbjct: 234 KAFYDYLKGPQAAEIFKRYGFTTK 257
>gi|23099771|ref|NP_693237.1| ABC transporter substrate-binding protein [Oceanobacillus iheyensis
HTE831]
gi|22778001|dbj|BAC14272.1| ABC transporter substrate-binding protein [Oceanobacillus iheyensis
HTE831]
Length = 328
Score = 36.7 bits (83), Expect = 4.6, Method: Composition-based stats.
Identities = 32/278 (11%), Positives = 75/278 (26%), Gaps = 26/278 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMT--SVILEEILGYKTN 58
M K + F+ + A + +S T ++ A+ + A + EE G + +
Sbjct: 1 MRKTYFIISFVAVLILLSACNQESTTNIKLAEVTRSIFYAPQYVALEKGFFEEE-GLEVD 59
Query: 59 IKLL-AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
++ T +L + G DI + S+ Y+ + A N
Sbjct: 60 LQTTWGGDTTMTALLSDGADIALVGSETSM------YVYAQDSRDYAINFAQLTQTDGTF 113
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
V + K LG ++ G+ + I+ + +
Sbjct: 114 LVAKEADDDFSWEDLKDSTFLGQRVGGMPQMVGEYVLKENGIDPHGDLKLEQNIDF---- 169
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPH-PINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
+ I + +EP I ++ + + +++
Sbjct: 170 ---ANIAGAFASGDYDYVQLFEPTASIFEAEGQGHIVASFGEESGAVPYTVFMTKQSFIE 226
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGR 274
K + ++Q + +
Sbjct: 227 KEDEAVEAFTRAIYKAQQW--------VDEQSAEEIAE 256
>gi|294782811|ref|ZP_06748137.1| NMT1/THI5 like protein [Fusobacterium sp. 1_1_41FAA]
gi|294481452|gb|EFG29227.1| NMT1/THI5 like protein [Fusobacterium sp. 1_1_41FAA]
Length = 345
Score = 36.7 bits (83), Expect = 4.6, Method: Composition-based stats.
Identities = 29/293 (9%), Positives = 79/293 (26%), Gaps = 38/293 (12%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAA-TTAMTSVILEEILGYKT-- 57
+ ++ + + S+ + V A+ + +++ LE G
Sbjct: 8 IKILIGLIALIVLAFGSFKPKDKNNENVNTAEVNLKKVIIGLPGISNQTLEA-TGIAVNK 66
Query: 58 -----NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKY 112
+K + F + G + + + I ++ N K
Sbjct: 67 GYIAEELKKVGYEPEFIYFQQAGPAVN-EALATNKIDV--AMYGDFPITVLKSNGGDVKV 123
Query: 113 MLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
N + D K K+L K G + +++ + +
Sbjct: 124 FAVDNSRFMYGVLVQNDDNIKSIKDLEGKKVLYRKGTVEQKFFKEILKKYNLDE--DKFV 181
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRS 232
+ + Q + + + S + + G S+ V R+
Sbjct: 182 SVNAGGADGQSIFSAKEAEAIFTFYYTALYMESKGLGKVIDSTLDKPEVGTQSLA-VGRT 240
Query: 233 DYLDKCPNIS-RLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLL 284
+L++ P+ + ++K + + + +P+ +
Sbjct: 241 KFLEENPDAAVAIIKAL----------------------ERAKDFAKENPEEV 271
>gi|296139368|ref|YP_003646611.1| NLPA lipoprotein [Tsukamurella paurometabola DSM 20162]
gi|296027502|gb|ADG78272.1| NLPA lipoprotein [Tsukamurella paurometabola DSM 20162]
Length = 291
Score = 36.7 bits (83), Expect = 4.6, Method: Composition-based stats.
Identities = 15/125 (12%), Positives = 33/125 (26%), Gaps = 10/125 (8%)
Query: 1 MYKILAVCLF-LTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNI 59
M + + L + + + ++ T + + +E G
Sbjct: 3 MKRFALALVVPLALATTACGSGSGDGDTIKIGVTDGAQQFWQ--VYKDLAKEQ-GITVET 59
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ + N G Y +F+A Y + +LV GA + +
Sbjct: 60 TNFSDYQQPNAALNDGDLQINEYQ---HLQFLAEYNVKNKTELV---PIGATAIYPLPLY 113
Query: 120 GFALG 124
Sbjct: 114 SKKHK 118
>gi|255030506|ref|ZP_05302457.1| hypothetical protein LmonL_17941 [Listeria monocytogenes LO28]
Length = 41
Score = 36.7 bits (83), Expect = 4.7, Method: Composition-based stats.
Identities = 4/32 (12%), Positives = 11/32 (34%)
Query: 249 KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
K S ++ ++ V + L+ +
Sbjct: 3 KISTEEMQKLNYEADGKLKEPSIVAQEFLQKN 34
>gi|323491877|ref|ZP_08097051.1| ABC-type amino acid transport/signal transduction systems,
periplasmic component [Vibrio brasiliensis LMG 20546]
gi|323313894|gb|EGA66984.1| ABC-type amino acid transport/signal transduction systems,
periplasmic component [Vibrio brasiliensis LMG 20546]
Length = 277
Score = 36.7 bits (83), Expect = 4.7, Method: Composition-based stats.
Identities = 14/102 (13%), Positives = 28/102 (27%), Gaps = 11/102 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWT--------DIAATTAMTSVILEEI 52
M ++ L+L + + V+ A+ W + T + E
Sbjct: 29 MRSVVKTFLYLAASLLFISF--AQANTVKLANGEWAPYQSKTLKNGGFITQIVKEAFEAE 86
Query: 53 LGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPY 94
GY+ + F K D + + + Y
Sbjct: 87 -GYQVEFTYMPWKRGFEESKAGKFDGSLIWSKNPDREQFFNY 127
>gi|261855403|ref|YP_003262686.1| NlpA lipoprotein [Halothiobacillus neapolitanus c2]
gi|261835872|gb|ACX95639.1| NlpA lipoprotein [Halothiobacillus neapolitanus c2]
Length = 327
Score = 36.7 bits (83), Expect = 4.7, Method: Composition-based stats.
Identities = 28/295 (9%), Positives = 72/295 (24%), Gaps = 44/295 (14%)
Query: 1 MYKILAVCL-FLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL----GY 55
M +L + S P+ + W A V +E+ G
Sbjct: 1 MKSVLRAVSRVVLGAVFLGGSALASAAPLTIGYSDWPGWVA----WQVAIEKNWFKDAGV 56
Query: 56 KTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
+ + +D + + + S+ ++ + M+
Sbjct: 57 DVKFDWFDYAPSMEAFAAGKLDA---VTMTNGDALVTGATGAKSVMILINDYSNGNDMIV 113
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
K+L K G+E G + +L+ ++ N + +L+
Sbjct: 114 GAP------------GIDSLKDLKGKKVGVEIGFVDHLLLLNGLHKNGMTENDVQLVNVP 161
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPH-----PINSDLNIHYLPGGEEISGFGEASVYT-- 228
+ + + +W+P+ + Y + +V
Sbjct: 162 TNETPQVLAS----GQVSAIGAWQPNSGAALKLVPGSKPIYTSADAPGLIYDVLAVSPQS 217
Query: 229 -----VVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLR 278
+ + + + K M + + + L+
Sbjct: 218 LAMHRAEWEKVIKVWYRVVDYINDPKTHDEAVRIMASRV---GVPPEEY-QAFLK 268
>gi|225551823|ref|ZP_03772766.1| spermidine/putrescine ABC transporter,
spermidine/putrescine-binding periplasmic protein
[Borrelia sp. SV1]
gi|225371618|gb|EEH01045.1| spermidine/putrescine ABC transporter,
spermidine/putrescine-binding periplasmic protein
[Borrelia sp. SV1]
Length = 348
Score = 36.7 bits (83), Expect = 4.8, Method: Composition-based stats.
Identities = 21/194 (10%), Positives = 51/194 (26%), Gaps = 23/194 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M KI + LTTF+ + + + W + T + E + I
Sbjct: 1 MKKIFILIAILTTFACT------NKDTITLNVFNWAEYIDETLLDQFEKENNIKIDYEIF 54
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ + K + +++ I E N+
Sbjct: 55 HNNEEMMAKFNNTKNYYDIIVPSEYLIQELIDEGKIEKLDYSKLPNVT------------ 102
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
K+ + +Y + + + + ++GF ++ +
Sbjct: 103 -----KNITQNLTNLEHDPGNLYSVPAYWGLMGILYNKTKIDLNDMQGFDILFNKKYKKE 157
Query: 181 SQIRRDQRNNIPAV 194
+ ++NI
Sbjct: 158 ITMLDSPKDNIGVA 171
>gi|191168439|ref|ZP_03030228.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli B7A]
gi|190901527|gb|EDV61287.1| molybdate ABC transporter, periplasmic molybdate-binding protein
[Escherichia coli B7A]
Length = 257
Score = 36.7 bits (83), Expect = 4.9, Method: Composition-based stats.
Identities = 26/256 (10%), Positives = 61/256 (23%), Gaps = 14/256 (5%)
Query: 6 AVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVP 65
+F+++ AD FA T A + + +E G +
Sbjct: 8 LFAGAALSFAVAGNTLADEGKITVFAAASLT--NAMQDIATQYKKEK-GVDVVSSFASSS 64
Query: 66 VTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGI 125
R ++ + + +K++ +++ +I + ++ V
Sbjct: 65 TLARQIEAGAP---ADLFISADQKWMDYAVDKKAIDTASRQTLLGNSLVVVAPKASEQKD 121
Query: 126 KSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRR 185
+ L + I K + +
Sbjct: 122 FIIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPAEDVRGALA 181
Query: 186 DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV------VRSDYLD--K 237
N + + + + S + E V V + D K
Sbjct: 182 LVERNEAPLGIVYGSDAVVSKGVKVVATFPVDSHKKVEYPVAVVEGHNNATVKAFYDYLK 241
Query: 238 CPNISRLLKNIKFSVA 253
P + + K F+
Sbjct: 242 GPQAAEIFKRYGFTTK 257
>gi|213971163|ref|ZP_03399281.1| sulfonate ABC transporter, periplasmic sulfonate-binding protein
[Pseudomonas syringae pv. tomato T1]
gi|301382292|ref|ZP_07230710.1| sulfonate ABC transporter, periplasmic sulfonate-binding protein,
putative [Pseudomonas syringae pv. tomato Max13]
gi|302061542|ref|ZP_07253083.1| sulfonate ABC transporter, periplasmic sulfonate-binding protein,
putative [Pseudomonas syringae pv. tomato K40]
gi|302134777|ref|ZP_07260767.1| sulfonate ABC transporter, periplasmic sulfonate-binding protein,
putative [Pseudomonas syringae pv. tomato NCPPB 1108]
gi|213924032|gb|EEB57609.1| sulfonate ABC transporter, periplasmic sulfonate-binding protein
[Pseudomonas syringae pv. tomato T1]
Length = 321
Score = 36.7 bits (83), Expect = 4.9, Method: Composition-based stats.
Identities = 25/268 (9%), Positives = 69/268 (25%), Gaps = 45/268 (16%)
Query: 23 DSCTPVRFADTGWTDIA---ATTAMTSVILEEILGYKTNIKLLAV-PVTFRSLKNKGIDI 78
+R + + A ++ + E+ G K P L ID
Sbjct: 26 AQAEDLRIGYQKYGTLVLLKAKGSLEKRLAEQ--GVKVQWTEFPGGPQLLEGLNVGSIDF 83
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL 138
+ P A + + E + V +K +
Sbjct: 84 GVTGETP---PVFAQAAGADLLYVAYEPPAPTSEAILVPKDSPITSVKDLKG-------- 132
Query: 139 GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
K + G+ + ++ + + + + + R ++ W
Sbjct: 133 --KKVVLNKGSNVHYLLVKALEDAGLKYTDIQTVFLPP----ADARAAFERGSVDAWVIW 186
Query: 199 EPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEM 258
+P+ ++ + ++ +G + + + Y K P + +
Sbjct: 187 DPYQAAAEKQLQARTL-KDGTGIVDNHQFYLATKPYAQKNPKV-------------IQAV 232
Query: 259 MKLILNNKQDRQFVGRTMLRTHPDLLKN 286
++ + + HP+ +
Sbjct: 233 IEEVR--------AVGEWSKAHPEEVTK 252
>gi|226321337|ref|ZP_03796864.1| spermidine/putrescine ABC transporter,
spermidine/putrescine-binding periplasmic protein
[Borrelia burgdorferi Bol26]
gi|226233133|gb|EEH31885.1| spermidine/putrescine ABC transporter,
spermidine/putrescine-binding periplasmic protein
[Borrelia burgdorferi Bol26]
Length = 348
Score = 36.7 bits (83), Expect = 4.9, Method: Composition-based stats.
Identities = 21/194 (10%), Positives = 52/194 (26%), Gaps = 23/194 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M KI + + LTTF+ + + + W + T + E + I
Sbjct: 1 MKKIFILIVILTTFACT------NKDTITLNVFNWAEYIDETLLDQFEKENNIKINYEIF 54
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ + K + +++ I E N+
Sbjct: 55 HNNEEMMAKFNNTKNYYDIIVPSEYLIQELIDEGKIEKLDYSKLPNVT------------ 102
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
K+ + +Y + + + + ++GF ++ +
Sbjct: 103 -----KNITQNLTNLEHDPGNLYSVPAYWGLMGILYNKTKIDLNDMQGFDILFNKKYKKE 157
Query: 181 SQIRRDQRNNIPAV 194
+ ++NI
Sbjct: 158 ITMLDSPKDNIGVA 171
>gi|257886977|ref|ZP_05666630.1| phosphonate ABC transporter [Enterococcus faecium 1,141,733]
gi|257823031|gb|EEV49963.1| phosphonate ABC transporter [Enterococcus faecium 1,141,733]
Length = 342
Score = 36.7 bits (83), Expect = 4.9, Method: Composition-based stats.
Identities = 19/188 (10%), Positives = 45/188 (23%), Gaps = 14/188 (7%)
Query: 1 MYKILAVCLFLTTFSI------SYARDADSCTPVRFA-DTGWTDIAA--TTAMTSVILEE 51
M +I+ + + S ++ A + ++E+
Sbjct: 8 MVRIVLIATLIVLAGCRSSNQTVSGNQNQSSDTIKIAFYPNESAAEFEPAREAVKAVIEK 67
Query: 52 ILGYKTNIKLL-AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAE--NLQ 108
K + V S+ N +D+ +E E + L+
Sbjct: 68 ATDKKVELVTSTDYNVVVESIANGQVDLAYMGAEGYIEANKKNEQVEAILTNSGPSGMLE 127
Query: 109 GAKYM--LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSL 166
A Y LAV ++ K+ + + +
Sbjct: 128 DALYYSFLAVKPENSKEYEETGGYTIDPIKDKTISFVTNTSTSGFTVPSNKIAEHFDLKN 187
Query: 167 KGFRLIEA 174
+++
Sbjct: 188 TDDFIMDG 195
>gi|269959533|ref|ZP_06173915.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269835720|gb|EEZ89797.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 415
Score = 36.4 bits (82), Expect = 5.0, Method: Composition-based stats.
Identities = 34/299 (11%), Positives = 75/299 (25%), Gaps = 31/299 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRF-ADTGWTDIAATTAMTSVIL---EEILGYK 56
M ++ +A T +RF + V+L E+ G K
Sbjct: 1 MKLKTLTLAMTAALGVAATVNAADETKIRFDGFPDFDSS------LKVLLPDFEKETGIK 54
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ + L I +E+ + + L
Sbjct: 55 VDYLMNNHGDHHTKLTTN------LATGSGAGDVIVVDVEKIGPFVASGGLVNLSEKYGA 108
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ + ++ ++ + G D+ I +
Sbjct: 109 DKYAESFAPYAWAQGKGADGDVYGMPV--DLGPGVMYYRTDIFEKAGID------INEAI 160
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
S I ++ V L + + +P GE + + + VV S+
Sbjct: 161 KDWDSYIAAGEKLKQQNVQLIASAADVAQAIIFTTVPEGEGLYFDKDGN--PVVTSERFV 218
Query: 237 KCPNISRLLKNIKFSVALENEMMKLIL--NNKQDRQFVGRTMLRTHPDLLKNWLIGVTT 293
+++ +++ + + N + L H L NW+ T
Sbjct: 219 HAFEVAKEIRDKGLDGRILAWSNEWYEGFRNGTFATQLSGAWLLGH---LNNWIAPETA 274
>gi|320666191|gb|EFX33197.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli O157:H7 str.
LSU-61]
Length = 267
Score = 36.4 bits (82), Expect = 5.0, Method: Composition-based stats.
Identities = 22/231 (9%), Positives = 61/231 (26%), Gaps = 5/231 (2%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVT-FRSLKNKGIDI 78
+ + ++ + + + +E G + + + + N +D
Sbjct: 21 QSSSDEKHIKVGVINGAEQDV-AEVAKKVAKEKYGLDVELVGFSGSLLPNDATNNGELDA 79
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL 138
+ P LE+ + + A Y + + + I L
Sbjct: 80 NVFQHRPFLEQDNQTHGYKLVAVGNTFVFPMAGYSKKI-KTVAQIKEGATVAIPNDPTNL 138
Query: 139 GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
G + ++ + + + +Q+ R Q + V +
Sbjct: 139 GRALLLLQKEKLITLKEGKGLLPTALDITDNPRHLQIMELEGAQLPRVQDDPKVDVAIIS 198
Query: 199 EPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
+ + L+ E V +V + N+ L++ +
Sbjct: 199 TTYIQQTGLSPVNDSVFIEDKNSP--YVNILVAREDNKNAENVKEFLQSYQ 247
>gi|222151672|ref|YP_002560828.1| ABC-type amino acid transport system substrate binding component
[Macrococcus caseolyticus JCSC5402]
gi|222120797|dbj|BAH18132.1| ABC-type amino acid transport system substrate binding component
[Macrococcus caseolyticus JCSC5402]
Length = 255
Score = 36.4 bits (82), Expect = 5.0, Method: Composition-based stats.
Identities = 15/103 (14%), Positives = 28/103 (27%), Gaps = 16/103 (15%)
Query: 1 MYKILAVCLFLTTFSISYARDADS----CTPVRFA----DTGWT----DIAATTA---MT 45
M K+ AV L + + + + +T + T +T
Sbjct: 1 MKKLFAVLTALLFVLAACGSNEEDTKKDSKTLTVGTEGTYAPFTFHDKEGKLTGYDVEVT 60
Query: 46 SVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLE 88
+ ++ GYK F L + D + E
Sbjct: 61 EAVAKKA-GYKVKFVETQWDSMFSGLNSGRFDTVANQVGINEE 102
>gi|218532105|ref|YP_002422921.1| ABC transporter substrate-binding protein [Methylobacterium
chloromethanicum CM4]
gi|218524408|gb|ACK84993.1| ABC transporter substrate-binding protein [Methylobacterium
chloromethanicum CM4]
Length = 475
Score = 36.4 bits (82), Expect = 5.0, Method: Composition-based stats.
Identities = 30/220 (13%), Positives = 60/220 (27%), Gaps = 27/220 (12%)
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFI----APYLEEGSIKLVAENLQGAKYMLA 115
+ P + + YP + P I + A N+ G+ +
Sbjct: 81 NFTSGPPVTNGMMAGKLQFGAMGDYPLVVNGYTFQNNPESRSRLIAVAAYNIHGSGNGIV 140
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
VN A +L K+ + G+ + +L + + + FRL+ S
Sbjct: 141 VNKETDAF----------SFDDLKGKVVSVPFGSAAHGMVLKALQDKGYPQSFFRLVNQS 190
Query: 176 ELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYL 235
+ + + + P + + VVR+D+
Sbjct: 191 PEVGSTNL----QEKKIDAHADFVPFAELLPFRGFARKVFDGVETNLPTWHGVVVRTDFA 246
Query: 236 DKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRT 275
+K P I A ++ K D +
Sbjct: 247 EKYPEIVD---------AYLQAILDAQAWVKADPKRAAEQ 277
>gi|296877417|ref|ZP_06901454.1| amino acid ABC superfamily ATP binding cassette transporter,
membrane protein [Streptococcus parasanguinis ATCC
15912]
gi|296431578|gb|EFH17388.1| amino acid ABC superfamily ATP binding cassette transporter,
membrane protein [Streptococcus parasanguinis ATCC
15912]
Length = 520
Score = 36.4 bits (82), Expect = 5.1, Method: Composition-based stats.
Identities = 34/289 (11%), Positives = 86/289 (29%), Gaps = 36/289 (12%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFAD------TGWT-DIAATTAMTSVILEE-I 52
M K + L + + A + +R WT + A A+ +
Sbjct: 1 MKKTIFALLTGLFICLGITQIAHADDYLRIGMEAAYAPFNWTQEDDANGAVKIDGTNQYA 60
Query: 53 LGYKTNI------KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAEN 106
GY I +L P+ ++ N I + ++P E +++
Sbjct: 61 NGYDVQIAKKVAEELGKKPLIVKTSWNGLIPALTSGKIDMIIAGMSPTAERKKEVAFSKS 120
Query: 107 LQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSL 166
++ ++ V G S D K +Y
Sbjct: 121 YYTSEPVMLVRKDGNYANATSLDDFKDAKVTSQQGVY-----------------LYSLIS 163
Query: 167 KGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSD--LNIHYLPGGEEISGFGEA 224
+ + + + + F+Q+R+ + + ++S P + ++ + + ++ GE
Sbjct: 164 QLKGVKQETAMGDFAQMRQALESGVIDAYVSERPEALTAESANSKFKMIQFKKGFEVGEE 223
Query: 225 SVYTVV-RSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFV 272
+ + ++ L S + ++M ++ +
Sbjct: 224 DATIAIGMKKGDTRIDQVNAALAK--ISSEDQVKLMDDMIKKQPASSDA 270
>gi|154175120|ref|YP_001409173.1| NADPH-dependent 7-cyano-7-deazaguanine reductase [Campylobacter
curvus 525.92]
gi|153793181|gb|EAT99410.2| NADPH-dependent 7-cyano-7-deazaguanine reductase (nadph-dependent
nitrile oxidoreductase) [Campylobacter curvus 525.92]
Length = 115
Score = 36.4 bits (82), Expect = 5.1, Method: Composition-based stats.
Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 14/93 (15%)
Query: 1 MYKILAVCLFLTTFSISYARD---------ADSCTPVRFA----DTGWTDIAATTAMTS- 46
M KILA L F A A + F + ++ +
Sbjct: 1 MKKILASSLIALAFLSGCATSNTATQAPSMAKETKTIEFHGTGYYKDYKATLVSSDLFKT 60
Query: 47 VILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
+ + +GYK ++K R + +KGI+I
Sbjct: 61 AVFTDSMGYKFDMKHAPAASGIRMVSDKGIEIH 93
>gi|195941459|ref|ZP_03086841.1| spermidine/putrescine ABC transporter,
spermidine/putrescine-binding periplasmic protein (potD)
[Borrelia burgdorferi 80a]
gi|312149073|gb|ADQ29144.1| spermidine/putrescine ABC transporter,
spermidine/putrescine-binding periplasmic protein
[Borrelia burgdorferi N40]
Length = 348
Score = 36.4 bits (82), Expect = 5.2, Method: Composition-based stats.
Identities = 21/194 (10%), Positives = 51/194 (26%), Gaps = 23/194 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M KI + LTTF+ + + + W + T + E + I
Sbjct: 1 MKKIFILIAILTTFACT------NKDTITLNVFNWAEYIDETLLDQFEKENNIKINYEIF 54
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ + K + +++ I E N+
Sbjct: 55 HNNEEMMAKFNNTKNYYDIIVPSEYLIQELIDEGKIEKLDYSKLPNVT------------ 102
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
K+ + +Y + + + + ++GF ++ +
Sbjct: 103 -----KNITQNLTNLEHDPGNLYSVPAYWGLMGILYNKTKIDLNDMQGFDILFNKKYKKE 157
Query: 181 SQIRRDQRNNIPAV 194
+ ++NI
Sbjct: 158 ITMLDSPKDNIGVA 171
>gi|224533330|ref|ZP_03673924.1| spermidine/putrescine ABC transporter,
spermidine/putrescine-binding periplasmic protein
[Borrelia burgdorferi CA-11.2a]
gi|225548909|ref|ZP_03769886.1| spermidine/putrescine ABC transporter,
spermidine/putrescine-binding periplasmic protein
[Borrelia burgdorferi 94a]
gi|224513495|gb|EEF83852.1| spermidine/putrescine ABC transporter,
spermidine/putrescine-binding periplasmic protein
[Borrelia burgdorferi CA-11.2a]
gi|225370512|gb|EEG99948.1| spermidine/putrescine ABC transporter,
spermidine/putrescine-binding periplasmic protein
[Borrelia burgdorferi 94a]
Length = 348
Score = 36.4 bits (82), Expect = 5.2, Method: Composition-based stats.
Identities = 21/194 (10%), Positives = 51/194 (26%), Gaps = 23/194 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M KI + LTTF+ + + + W + T + E + I
Sbjct: 1 MKKIFILIAILTTFACT------NKDTITLNVFNWAEYIDETLLDQFEKENNIKINYEIF 54
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ + K + +++ I E N+
Sbjct: 55 HNNEEMMAKFNNTKNYYDIIVPSEYLIQELIDEGKIEKLDYSKLPNVT------------ 102
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
K+ + +Y + + + + ++GF ++ +
Sbjct: 103 -----KNITQNLTNLEHDPGNLYSVPAYWGLMGILYNKTKIDLNDMQGFDILFNKKYKKE 157
Query: 181 SQIRRDQRNNIPAV 194
+ ++NI
Sbjct: 158 ITMLDSPKDNIGVA 171
>gi|302188610|ref|ZP_07265283.1| Short-chain dehydrogenase/reductase SDR [Pseudomonas syringae pv.
syringae 642]
Length = 244
Score = 36.4 bits (82), Expect = 5.2, Method: Composition-based stats.
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE---NEMMKLILNN 265
+ V+T R +++ CP LL +I + +E M I +
Sbjct: 22 KHFNAAGWEVFTASRQNWVADCPWAEGLLNHIHLDLEDIDSVSESMAAIKDK 73
>gi|254458346|ref|ZP_05071772.1| nitrate transporter [Campylobacterales bacterium GD 1]
gi|207085182|gb|EDZ62468.1| nitrate transporter [Campylobacterales bacterium GD 1]
Length = 343
Score = 36.4 bits (82), Expect = 5.2, Method: Composition-based stats.
Identities = 23/273 (8%), Positives = 67/273 (24%), Gaps = 21/273 (7%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTD--IAATTAMTSVILEEILGYKTN 58
+ KI+ + L L+ + S + TD + L
Sbjct: 2 LKKIIGLGLGLSLVAASLLAAELEKKKLTIGFIALTDCAPIVIAEEKGFFKKYGLDVHVV 61
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA--- 115
+ P + + + D + + +++ + G
Sbjct: 62 KEGGGWPGIQQKVISGEYDFSHALAGMPIAATLGINGNANLQAVLSLDFNGNGITFGNNI 121
Query: 116 ---VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ G + + K + ++ ++ + + L+ +
Sbjct: 122 IKEMKKYGMDETKRPLGSESLKKYIDAKHKAEGSSYQPLSFGMVHPVSTHNYELRYWMAS 181
Query: 173 EASELASFSQIRR-----------DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGF 221
+ I+ V W + + + +
Sbjct: 182 SGIVPDRDTTIKPFPPPTMPSNLIAGNIEGYCVGEPWNERIVLKKKGSTLVTNYDIWNNN 241
Query: 222 GEASVYTVVRSDYLDKCPNISRLLKNIKFSVAL 254
E + T R+D+++K P ++ + +
Sbjct: 242 PEKVLQT--RADFIEKNPETTKAVMKAILEAQM 272
>gi|187919249|ref|YP_001888280.1| NLPA lipoprotein [Burkholderia phytofirmans PsJN]
gi|187717687|gb|ACD18910.1| NLPA lipoprotein [Burkholderia phytofirmans PsJN]
Length = 279
Score = 36.4 bits (82), Expect = 5.3, Method: Composition-based stats.
Identities = 28/260 (10%), Positives = 63/260 (24%), Gaps = 11/260 (4%)
Query: 5 LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAV 64
L L + A ++ I A E+ L K I+
Sbjct: 19 LISAFGLALVLQATPASAADSPTLKIGTATSPQIEALKIAAREAKEQGLDVKI-IEFTDW 77
Query: 65 PVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALG 124
+L NK ID+ P LE ++ Y +
Sbjct: 78 NTPNAALANKDIDVNYFQHIPFLENAKKQGGYNFVAIAPGTIMKIGLYSKKIKRFDELKD 137
Query: 125 IKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIR 184
+ + ++ + + +I+ + Q+
Sbjct: 138 GATVAIANDPVNGGRGLLLL------QRAGLIKLKPGIDYRATTLDIIDNPKHLKIVQLE 191
Query: 185 R---DQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNI 241
+ + + + + + ++ VVR + + P I
Sbjct: 192 ASQLARSLDDVDLAQGYPSFIKLAGTTDPNSALLFDGLENKNYAIQWVVRPESAND-PRI 250
Query: 242 SRLLKNIKFSVALENEMMKL 261
+ + + S A+ + K
Sbjct: 251 RKFIAIYQHSPAVRAALDKA 270
>gi|119387603|ref|YP_918637.1| substrate-binding region of ABC-type glycine betaine transport
system [Paracoccus denitrificans PD1222]
gi|119378178|gb|ABL72941.1| Substrate-binding region of ABC-type glycine betaine transport
system [Paracoccus denitrificans PD1222]
Length = 333
Score = 36.4 bits (82), Expect = 5.3, Method: Composition-based stats.
Identities = 32/260 (12%), Positives = 66/260 (25%), Gaps = 34/260 (13%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILE--EILGYKTN 58
M + + + + V+ A G + + + + L E G
Sbjct: 3 MLRTILAAALVAG------ATPAAAETVKIAIGGASCVCYMPVVLAEQLGLYEKHGVDVE 56
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
+ G + +Y A +L + L G +AV
Sbjct: 57 LVDFKGGSAALKAVVGGSADVVSGYYEHTITLAAK-----RQELSSFVLMGRLPGIAV-- 109
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
D K K+L K GI L + + + +
Sbjct: 110 ----AVAPGKTDEVKSIKDLAGKTVGISAPGSSTDFFLKYMLSQAGLDPNAASVVGVGVG 165
Query: 179 SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV--------- 229
+ + + P P + L + + A + +
Sbjct: 166 ATA--VAALEQGRIDAVV--TPDPAITQLQSRHADLPILVDTRKAADTHALFGADYPGAA 221
Query: 230 --VRSDYLDKCPNISRLLKN 247
R+++LD+ P ++ L
Sbjct: 222 LYTRTEWLDQHPEQAQALAA 241
>gi|224532964|ref|ZP_03673572.1| spermidine/putrescine ABC transporter,
spermidine/putrescine-binding periplasmic protein
[Borrelia burgdorferi WI91-23]
gi|224512081|gb|EEF82474.1| spermidine/putrescine ABC transporter,
spermidine/putrescine-binding periplasmic protein
[Borrelia burgdorferi WI91-23]
Length = 348
Score = 36.4 bits (82), Expect = 5.4, Method: Composition-based stats.
Identities = 21/194 (10%), Positives = 51/194 (26%), Gaps = 23/194 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M KI + LTTF+ + + + W + T + E + I
Sbjct: 1 MKKIFILIAILTTFACT------NKDTITLNVFNWAEYIDETLLDQFEKENNIKINYEIF 54
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ + K + +++ I E N+
Sbjct: 55 HNNEEMMAKFNNTKNYYDIIVPSEYLIQELIDEGKIEKLDYSKLPNVT------------ 102
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
K+ + +Y + + + + ++GF ++ +
Sbjct: 103 -----KNITQNLTNLEHDPGNLYSVPAYWGLMGILYNKTKIDLNDMQGFDILFNKKYKKE 157
Query: 181 SQIRRDQRNNIPAV 194
+ ++NI
Sbjct: 158 ITMLDSPKDNIGVA 171
>gi|326202818|ref|ZP_08192685.1| extracellular solute-binding protein family 5 [Clostridium
papyrosolvens DSM 2782]
gi|325986895|gb|EGD47724.1| extracellular solute-binding protein family 5 [Clostridium
papyrosolvens DSM 2782]
Length = 537
Score = 36.4 bits (82), Expect = 5.5, Method: Composition-based stats.
Identities = 21/142 (14%), Positives = 38/142 (26%), Gaps = 3/142 (2%)
Query: 15 SISYARDADSCT--PVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLK 72
++ A D + + + A L+ LG + I+ V S K
Sbjct: 369 LLAEAGYPDGKGFPKITYGVSTGAGHEAVAEAIQQQLKTNLGIEVEIQAQEWNVFQESRK 428
Query: 73 NKGIDIFMGYW-YPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDI 131
N DI W ++ L + + A Y A+ +
Sbjct: 429 NGLFDIARDGWVGDYMDPSTFLDLITSNNPQNDSKYKNAGYDKAIAGARKETDPAKRMQL 488
Query: 132 AKYKKELGAKIYGIEPGNEGNQ 153
++L G+ P
Sbjct: 489 FHDAEKLLMDETGVAPIFFYTD 510
>gi|218249972|ref|YP_002375140.1| spermidine/putrescine ABC transporter,
spermidine/putrescine-binding periplasmic protein
[Borrelia burgdorferi ZS7]
gi|218165160|gb|ACK75221.1| spermidine/putrescine ABC transporter,
spermidine/putrescine-binding periplasmic protein
[Borrelia burgdorferi ZS7]
Length = 348
Score = 36.4 bits (82), Expect = 5.5, Method: Composition-based stats.
Identities = 21/194 (10%), Positives = 52/194 (26%), Gaps = 23/194 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M KI + + LTTF+ + + + W + T + E + I
Sbjct: 1 MKKIFILIVILTTFACT------NKDTITLNVFNWAEYIDETLLDQFEKENNIKINYEIF 54
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ + K + +++ I E N+
Sbjct: 55 HNNEEMMAKFNNTKNYYDIIVPSEYLIQELIDEGKIEKLDYSKLPNVT------------ 102
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
K+ + +Y + + + + ++GF ++ +
Sbjct: 103 -----KNITQNLTNLEHDPGNLYSVPAYWGLMGILYNKTKIDLNDMRGFDILFNKKYKKE 157
Query: 181 SQIRRDQRNNIPAV 194
+ ++NI
Sbjct: 158 ITMLDSPKDNIGVA 171
>gi|301169427|emb|CBW29027.1| hypothetical protein HIB_08400 [Haemophilus influenzae 10810]
Length = 284
Score = 36.4 bits (82), Expect = 5.6, Method: Composition-based stats.
Identities = 18/175 (10%), Positives = 44/175 (25%), Gaps = 9/175 (5%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K L L + ++ +D D+ ++ T + T L+E +
Sbjct: 1 MKKTLVAALISSVILLTGCQDKDTEAKIK--QLNQTVAQLSAENTK--LKEQIEKTVPAI 56
Query: 61 LLAVPVTFRSLK-----NKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
+ F + D + L+ + L + M
Sbjct: 57 FVENDEIFNQSEIIKHPKSKEDYQPEETKIEYSISTIKTNIDWLNDLLWKKLTENEEMKN 116
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
++ F ++ + K + + + + S +
Sbjct: 117 ISREQFVARYQTAFEEDKKEAKETPSFGISHSIWTNFIGQKEKLATFAISFYDYE 171
>gi|303326413|ref|ZP_07356856.1| putative nitrate/sulfonate/bicarbonate ABC transporter
substrate-binding protein [Desulfovibrio sp. 3_1_syn3]
gi|302864329|gb|EFL87260.1| putative nitrate/sulfonate/bicarbonate ABC transporter
substrate-binding protein [Desulfovibrio sp. 3_1_syn3]
Length = 354
Score = 36.4 bits (82), Expect = 5.6, Method: Composition-based stats.
Identities = 21/196 (10%), Positives = 47/196 (23%), Gaps = 14/196 (7%)
Query: 50 EEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQG 109
EE L ++ N + + N + L + + N +
Sbjct: 49 EEGLDFEVNYFNSGMDIV-----NATPSGSWVVAGNGAVPGVWGGLRYDTYVIAIGNDES 103
Query: 110 AKYMLAVNDVGFALGIKSYQDIAKY----KKELGAKIYGIEPGNEGNQRILDMINNNKFS 165
+ V +K + + + K + + + + + +
Sbjct: 104 YTNGVLVRPDSPIAKVKGWNKDFPDVLGSPETVRGKTFLCTTMSSPHMALSSWLKVLGLT 163
Query: 166 LKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEAS 225
K + + + N W PH + L G + G
Sbjct: 164 DKDVVIKNMDQPQALG----AFENGTGDGVALWAPHLYVGEAKGWRLAGNIKNCGQTL-P 218
Query: 226 VYTVVRSDYLDKCPNI 241
+ Y D P +
Sbjct: 219 IVIQADKKYADAHPEV 234
>gi|325280853|ref|YP_004253395.1| glycoside hydrolase family 2 sugar binding protein [Odoribacter
splanchnicus DSM 20712]
gi|324312662|gb|ADY33215.1| glycoside hydrolase family 2 sugar binding protein [Odoribacter
splanchnicus DSM 20712]
Length = 601
Score = 36.4 bits (82), Expect = 5.7, Method: Composition-based stats.
Identities = 21/253 (8%), Positives = 59/253 (23%), Gaps = 32/253 (12%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M KIL + L YA+ + ++ T W + +
Sbjct: 1 MKKILFSAIALAVSLAGYAQWKPAGDKIK---TTWAEQIDPNNVL--------------- 42
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ K ++ Y ++ + +++ + + +G
Sbjct: 43 PEYPRPIMERKEWKNLNGLWEY---AIRPTGTQQPADMDGQILVPFAVESSLSGVMKTLG 99
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ ++ G I + + G+
Sbjct: 100 KENELWYSREFTVPSSWKGKNILLHFGAVDWQADVWVNGVKMGQHRGGYTPFSFDITPVL 159
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ + W+P + + I + ++ V + P
Sbjct: 160 A------KGKNQITVKVWDPSDEGYQPRGKQVKHPDGIWYTPVSGIWQTVWME-----PV 208
Query: 241 ISRLLKNIKFSVA 253
+ + +K +
Sbjct: 209 SANHITRLKTTPD 221
>gi|253995579|ref|YP_003047643.1| sulfate ABC transporter periplasmic sulfate-binding protein
[Methylotenera mobilis JLW8]
gi|253982258|gb|ACT47116.1| sulfate ABC transporter, periplasmic sulfate-binding protein
[Methylotenera mobilis JLW8]
Length = 336
Score = 36.4 bits (82), Expect = 5.7, Method: Composition-based stats.
Identities = 34/303 (11%), Positives = 68/303 (22%), Gaps = 33/303 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWT-----DIAATTAMTSVILEEILGY 55
M K L L A S + + + A + L G
Sbjct: 1 MKKSLLAIAVLAATISFVAPITASAKDITLLNVSYDPTRELYQDFNAAFSKYWL-AKTGD 59
Query: 56 KTNIKLL------AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQG 109
K +K L + + Y L + ++ +L +
Sbjct: 60 KVTVKASHGGSGKQARAIIDGLDADVATLALAYDVDQLHEKGKLIPKDWQKRLAHNSSPY 119
Query: 110 AKYMLAVNDVGFALGIKSYQDIAKYKKEL--GAKIYGIEPGNEGNQRILDMINNNKFSLK 167
++ + G GIK + D+ K +
Sbjct: 120 TSTIVLLVRKGNPKGIKDWDDLVKPGVSVITPNPKTSGGARWNYLAAWAFAQKKYGGDEA 179
Query: 168 GFRL--------IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLN---IHYLPGGE 216
+ + + + I V L+WE + +
Sbjct: 180 KTKEFVGKLLKNVPVLDTGARGSTTTFVERGIGDVLLAWENEAFLAQKELGVGKFEIVVP 239
Query: 217 EISGFGEASVYTVVRSDYLDKCP---NISRLLKNIKFSVALENEMMKLILNNKQDRQFVG 273
+S E V V + K L+ + E + + + + V
Sbjct: 240 SLSILAEPPVTVV--DKFAKKHGTEAVAKAYLEYLY---TEEGQEIAAKNYYRPTSEAVA 294
Query: 274 RTM 276
+
Sbjct: 295 KKY 297
>gi|223889495|ref|ZP_03624081.1| spermidine/putrescine ABC transporter,
spermidine/putrescine-binding periplasmic protein
[Borrelia burgdorferi 64b]
gi|223885181|gb|EEF56285.1| spermidine/putrescine ABC transporter,
spermidine/putrescine-binding periplasmic protein
[Borrelia burgdorferi 64b]
Length = 348
Score = 36.4 bits (82), Expect = 5.7, Method: Composition-based stats.
Identities = 21/194 (10%), Positives = 51/194 (26%), Gaps = 23/194 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M KI + LTTF+ + + + W + T + E + I
Sbjct: 1 MKKIFILIAILTTFACT------NKDTITLNVFNWAEYIDETLLDQFEKENNIKINYEIF 54
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ + K + +++ I E N+
Sbjct: 55 HNNEEMMSKFNNTKNYYDIIVPSEYLIQELIDEGKIEKLDYSKLPNVT------------ 102
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
K+ + +Y + + + + ++GF ++ +
Sbjct: 103 -----KNITQNLTNLEHDPGNLYSVPAYWGLMGILYNKTKIDLNDMQGFDILFNKKYKKE 157
Query: 181 SQIRRDQRNNIPAV 194
+ ++NI
Sbjct: 158 ITMLDSPKDNIGVA 171
>gi|71280539|ref|YP_269985.1| putative phosphonate ABC transporter periplasmic
phosphonate-binding protein [Colwellia psychrerythraea
34H]
gi|71146279|gb|AAZ26752.1| putative phosphonate ABC transporter, periplasmic
phosphonate-binding protein [Colwellia psychrerythraea
34H]
Length = 288
Score = 36.4 bits (82), Expect = 5.7, Method: Composition-based stats.
Identities = 27/291 (9%), Positives = 69/291 (23%), Gaps = 24/291 (8%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRF-ADTGWTDIAATT--AMTSVILEEILGYKT 57
M + + + + + S F A + T ++ LEE LG +
Sbjct: 1 MKILTKLLVLCALTLSLFVTTSASAETFTFTAIPDADESQLRTRFEKVALYLEEQLGVEV 60
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+ + + + ++ + Q K +
Sbjct: 61 KYVPVKSYSAAVTAFRNN-QVQLAWFGGLSGVQARRLVPGSQAIAQGYEDQFFKSYFIAH 119
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
S+ DI + G + G I +
Sbjct: 120 YSTGLEMSYSFPDITETTFTF-----GSKGSTSGRLMPQYYIEQHLKKKPQQAFKRVGFS 174
Query: 178 ASFSQIRRDQRNNIPAVFL----SWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
++ ++ V WE ++ + + + + + R+D
Sbjct: 175 GDHNRTIVQVQSGTYQVGAVNYKVWESALAAGKIDTNKVKVIWKSPTYPDYQWTI--RAD 232
Query: 234 YLDKC-PNISRLLKN--IKFSVALE------NEMMKLILNNKQDRQFVGRT 275
P + ++ + + +K + Q + V +
Sbjct: 233 VEANFGPGFADKVQAALLTMDSPALLDSFPRSSFVKAKNEDFQPVEDVAKQ 283
>gi|94311791|ref|YP_585001.1| substrate-binding region of ABC-type glycine betaine transport
system [Cupriavidus metallidurans CH34]
gi|93355643|gb|ABF09732.1| taurine ABC-type transporter, periplasmic component [Cupriavidus
metallidurans CH34]
Length = 317
Score = 36.4 bits (82), Expect = 5.8, Method: Composition-based stats.
Identities = 39/257 (15%), Positives = 73/257 (28%), Gaps = 30/257 (11%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPS 86
PV +GWT A T + + G +IK++ +L + I
Sbjct: 28 PVVLGMSGWTGFAPLTLADKAGIFKKHGVDVDIKMIPQKDRHLALASGAIQ---CAATTV 84
Query: 87 LEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE 146
++V + LAV K +L K G++
Sbjct: 85 ETHVAWNANGVPITQIVQLDKSYGADGLAVRSDV------------KSFADLKGKTIGVD 132
Query: 147 -PGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINS 205
PG + M+ N +LK ++ S + +++EP+
Sbjct: 133 APGTAPYFGLAWMLKKNGMTLKDVKVTTLSP----QAAAQAFVAGQNDGAMTYEPYLSTV 188
Query: 206 DLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE--------NE 257
N + + +L P ++ L + F NE
Sbjct: 189 RANPDKGKILATTLDYPMVTDTLGCAPKWLKDNPKAAQALVDSYFEALEMIRKEPDKANE 248
Query: 258 MMKLILNNKQDRQFVGR 274
+M + KQ + +
Sbjct: 249 IMGAAV--KQTGEQFAK 263
>gi|269125289|ref|YP_003298659.1| aliphatic sulfonates family ABC transporter periplasmic
ligand-binding protein [Thermomonospora curvata DSM
43183]
gi|268310247|gb|ACY96621.1| aliphatic sulfonates family ABC transporter, periplasmic
ligand-binding protein [Thermomonospora curvata DSM
43183]
Length = 349
Score = 36.4 bits (82), Expect = 5.9, Method: Composition-based stats.
Identities = 49/323 (15%), Positives = 96/323 (29%), Gaps = 49/323 (15%)
Query: 2 YKILAVCLFLTTFSISYAR--------DADSCTPVRFAD-TGWTDIAATTAMTSVILEEI 52
+ +A L L + + A A ++ T A + I +
Sbjct: 7 RRAVAAALILFAGTGALAACGGDSEEGGAGGAKELKLGFFPNVTHAPALVGVDKGIFAKH 66
Query: 53 LGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKY 112
LG + I + P+ + IK+++ G
Sbjct: 67 LGVAPKTATFNAGPSAVEALFAK-GIDATFIGPNPAINAWSQSKGQGIKIISGAASGG-A 124
Query: 113 MLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
ML V IKS +D+ K KK ++ + + NK ++
Sbjct: 125 MLVV-----KPEIKSLEDL-KGKKVATPQLGNTQDVAARSYFKSKGFTVNKDGSGDISIV 178
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPH--PINSDLNIHYLPGGEEISGFGEASV-YTV 229
SQ + + EPH + + L +++ G+ V + +
Sbjct: 179 PQDN----SQTIETFKQGVIDGAWVPEPHASRLVVEAGAKVLVDEKDLWPDGKFVVTHLI 234
Query: 230 VRSDYLDKCPN-ISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
VR+D+L + P + +L++ +V + +PD K +
Sbjct: 235 VRTDFLKENPETVRKLVEA---TVESI-------------------DFINANPDEAKKSV 272
Query: 289 IG-VTTFDGQD-PSRQLERFMNN 309
+T G+ L+ N
Sbjct: 273 NNQLTKLAGKPLADEVLDASFKN 295
>gi|237798857|ref|ZP_04587318.1| Short-chain dehydrogenase/reductase SDR [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|237806173|ref|ZP_04592877.1| Short-chain dehydrogenase/reductase SDR [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331021711|gb|EGI01768.1| Short-chain dehydrogenase/reductase SDR [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331027286|gb|EGI07341.1| Short-chain dehydrogenase/reductase SDR [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 244
Score = 36.4 bits (82), Expect = 5.9, Method: Composition-based stats.
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 217 EISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALE---NEMMKLILNN 265
+ V+T R +++ CP LL +I + +E M I +
Sbjct: 22 KHFNAAGWEVFTASRQNWVADCPWAEGLLNHIHLDLEDIDSVSESMAAIKDK 73
>gi|153874036|ref|ZP_02002405.1| ABC transporter, periplasmic amino acid-binding protein [Beggiatoa
sp. PS]
gi|152069500|gb|EDN67595.1| ABC transporter, periplasmic amino acid-binding protein [Beggiatoa
sp. PS]
Length = 251
Score = 36.4 bits (82), Expect = 6.0, Method: Composition-based stats.
Identities = 13/113 (11%), Positives = 30/113 (26%), Gaps = 13/113 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWT--------DIAATTAMTSVILEEI 52
M KI+ + +S+ F + + + + LE
Sbjct: 1 MKKIVFFLIVALFYSMPCVA----GKRFTFLTVDFPPYYGENLPEYGWVSEVAKAALEIQ 56
Query: 53 LGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAE 105
GY+ I+ + + D +G +Y + + +
Sbjct: 57 -GYEVEIRFVPWVKALEDTQAGYYDALLGAYYTAERAEKYYFTAPIAQVRTGF 108
>gi|293375267|ref|ZP_06621549.1| bacterial extracellular solute-binding protein [Turicibacter
sanguinis PC909]
gi|325842095|ref|ZP_08167597.1| ABC transporter, solute-binding protein [Turicibacter sp. HGF1]
gi|292646023|gb|EFF64051.1| bacterial extracellular solute-binding protein [Turicibacter
sanguinis PC909]
gi|325489729|gb|EGC92086.1| ABC transporter, solute-binding protein [Turicibacter sp. HGF1]
Length = 452
Score = 36.4 bits (82), Expect = 6.1, Method: Composition-based stats.
Identities = 24/201 (11%), Positives = 44/201 (21%), Gaps = 11/201 (5%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K+LA + S A ++ +T T+ +T T E I
Sbjct: 1 MKKLLASLTVVLGLSTVVACSNETKGEQVTPETPTTEE--STDTTK---ETGNDLVVTIN 55
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ ++ L + + + V QGA L
Sbjct: 56 EPVSIEFWHAMSGDN-----EKVVNELVENFNSTIGQEKGITVTPVYQGAYNDLKSKTTA 110
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI-EASELAS 179
+ Y + + + F E S+ +
Sbjct: 111 AIKAKNAPAISQAYPDWVAEYLQSGAVVALNEYIEHPEVGITDFEDIAEAYRLENSQYTT 170
Query: 180 FSQIRRDQRNNIPAVFLSWEP 200
N V +
Sbjct: 171 DGTFYSLPFNKSTEVLYYNKT 191
>gi|148975233|ref|ZP_01812157.1| ABC-type sugar transport system, periplasmic component [Vibrionales
bacterium SWAT-3]
gi|145965157|gb|EDK30407.1| ABC-type sugar transport system, periplasmic component [Vibrionales
bacterium SWAT-3]
Length = 415
Score = 36.4 bits (82), Expect = 6.1, Method: Composition-based stats.
Identities = 33/298 (11%), Positives = 72/298 (24%), Gaps = 31/298 (10%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRF-ADTGWTDIAATTAMTSVIL---EEILGYK 56
M + + +RF + V+L E+ G K
Sbjct: 1 MKFKTLALSCAVALGLGTTAVNAADKEIRFDGFPDFDSS------LKVLLPDFEKETGIK 54
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ + L I +E+ + + L
Sbjct: 55 VDYLMNNHGDHHTKLTTN------LATGSGAGDVIVVDVEKIGPFVGSGGLVNLSENYGA 108
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ Y + ++ G D+ + +E +
Sbjct: 109 DKY--EERFAPYAWAQGKGADGDMYGIPVDLGPGVMYYRTDVFEKAGIN------VEDAI 160
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
S I ++ V L + + +P GE + + + VV S+
Sbjct: 161 KDWDSYIAAGEKLKEQNVQLIASAADVAQAIIFTTVPEGEGLYFDKDGN--PVVTSERFV 218
Query: 237 KCPNISRLLKNIKFSVALENEMMKLIL--NNKQDRQFVGRTMLRTHPDLLKNWLIGVT 292
+++ +++ + + N + L H L NW+ T
Sbjct: 219 HAFEVAKEIRDKGLDGRILAWSNEWYEGFRNGTFATQLSGAWLLGH---LNNWIAPET 273
>gi|83955990|ref|ZP_00964501.1| hypothetical protein NAS141_04203 [Sulfitobacter sp. NAS-14.1]
gi|83839754|gb|EAP78932.1| hypothetical protein NAS141_04203 [Sulfitobacter sp. NAS-14.1]
Length = 361
Score = 36.4 bits (82), Expect = 6.2, Method: Composition-based stats.
Identities = 19/208 (9%), Positives = 55/208 (26%), Gaps = 27/208 (12%)
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
+ + + + + A + +P I S + +
Sbjct: 131 FDPLRAEWEDRHRSKVLYWTNWNYAPLILRDPITSLEDIKGKRIRAYGVSADVVEALGGT 190
Query: 176 ELASFS-QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDY 234
+A + ++ + I ++ + P +I A T++
Sbjct: 191 AVAMAAPEVYQALERGILDGVYGFDFVTAIAYKLHEIAPQFYDIGDGPHAPAATIMNKRV 250
Query: 235 LDKCPNIS---------------------RLLKNIKFSVALENEMMKLILNNKQDRQFVG 273
D P+ +L + E + + + ++ +
Sbjct: 251 YDGLPDDVRKISDEIVDDIYGGQFSAIYEDVLATYVKTAEAEGVTLSTVSDEQK---AMA 307
Query: 274 RTMLRTHPDLLKNWLIGVTTFDGQDPSR 301
+ +++ P + +WL G D +
Sbjct: 308 KDLVQ--PAQVNSWLEDTAKPAGIDGAE 333
>gi|320547997|ref|ZP_08042278.1| amino acid ABC superfamily ATP binding cassette transporter,
membrane protein [Streptococcus equinus ATCC 9812]
gi|320447343|gb|EFW88105.1| amino acid ABC superfamily ATP binding cassette transporter,
membrane protein [Streptococcus equinus ATCC 9812]
Length = 523
Score = 36.4 bits (82), Expect = 6.3, Method: Composition-based stats.
Identities = 34/280 (12%), Positives = 79/280 (28%), Gaps = 27/280 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFAD------TGWT-DIAATTAM-TSVILEEI 52
M K+L C + +R WT D + A+ +
Sbjct: 1 MKKLLLSCFAALLLLFGGMTSIHADEYLRVGMEAAYAPFNWTQDDDSNGAVPIEGTSQYA 60
Query: 53 LGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKY 112
GY I + + + L + + ++ + K
Sbjct: 61 NGYDVQIAKKIADSL------GKELLVVKTTWTGLIPALTSGKIDMIAAGMSPTAERKKE 114
Query: 113 MLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+ S I KK A+ ++ + +
Sbjct: 115 I-----AFSDSYYTSSPVIVVSKKGDFAQATSLKDFAGAKLTSQQGVYLYNLIDQIKDAS 169
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPI-----NSDLNIHYLPGGEE-ISGFGEASV 226
+ + + F+Q+R+ + I ++S P I NSD + G+ + + ++
Sbjct: 170 KETAMGDFNQMRQALESGIIDGYVSERPDAISAENANSDFKMVAFEDGKGFATSKSDTAI 229
Query: 227 YTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNK 266
+R + + ++ +L S +M ++ +
Sbjct: 230 AVGLRKNDTETLAKVNAVLA--SISDDDRLALMDDMIEKQ 267
>gi|319763464|ref|YP_004127401.1| substrate-binding region of abc-type glycine betaine transport
system [Alicycliphilus denitrificans BC]
gi|317118025|gb|ADV00514.1| substrate-binding region of ABC-type glycine betaine transport
system [Alicycliphilus denitrificans BC]
Length = 321
Score = 36.4 bits (82), Expect = 6.3, Method: Composition-based stats.
Identities = 35/254 (13%), Positives = 72/254 (28%), Gaps = 20/254 (7%)
Query: 3 KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL 62
K+ + + + A T V +GWT A T + + G +K++
Sbjct: 7 KMAPLAAAVACVAGLAAPAHAQETKVALGMSGWTGFAPLTLADKAGIFKKNGLDVELKMI 66
Query: 63 AVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFA 122
+L +K I +++ + LAV +
Sbjct: 67 PQKDRHLALASKAIQ---CAATTVETHVAWNTNGVPIVQIFQMDKSYGADGLAVRNDV-- 121
Query: 123 LGIKSYQDIAKYKKELGAKIYG-IEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFS 181
K +L K G PG + + M++ N SLK +++
Sbjct: 122 ----------KGFADLKGKTVGVSAPGTAPHFGLAWMLSKNGMSLKDVKIVSLEPQP--- 168
Query: 182 QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNI 241
+ + +++EP+ + N + +L P
Sbjct: 169 -AAQAFISEQNDAAMTYEPYLSSVRANPQAGKILATTLDYPMVMDTVGCDPAWLKANPKA 227
Query: 242 SRLLKNIKFSVALE 255
++ + N F
Sbjct: 228 AQAMANSYFQALEM 241
>gi|226324673|ref|ZP_03800191.1| hypothetical protein COPCOM_02458 [Coprococcus comes ATCC 27758]
gi|225207121|gb|EEG89475.1| hypothetical protein COPCOM_02458 [Coprococcus comes ATCC 27758]
Length = 335
Score = 36.4 bits (82), Expect = 6.4, Method: Composition-based stats.
Identities = 26/262 (9%), Positives = 68/262 (25%), Gaps = 24/262 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPV------------RFADTGWTDIAATTAMTSVI 48
M K + + + + V A T +
Sbjct: 1 MKKAVRMAVAAGMCAALALSAGCQKKTVADDEVQRYAWPLATASPEDTVTQIYAEKFAEE 60
Query: 49 LEEILGYKTNIKLLAVPVT------FRSLKNKGIDIFMGYWYP--SLEKFIAPYLEEGSI 100
+EE+ K I++ S K+ I + P + +A +
Sbjct: 61 VEELSDGKMKIQVYPNGTIGGDRELLESCKDGDIPFVIQNTAPQVTFMPDLAVFDIPCRF 120
Query: 101 KLVAENLQ--GAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM 158
+ E + + + + G + A + + +E + + +
Sbjct: 121 STIDEVREKVDDPEFYGLLEDVYENGGYNLLGYADQGFRVMSTNKMVESLADFKGQKIRT 180
Query: 159 INNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEI 218
+ N+ +L + SFS++ + P+ + ++
Sbjct: 181 MENSYHMDFWKKLKASPTPMSFSEVYIGLQQGTIDAQE--NPYEVIVSNKLYEQQDYVVE 238
Query: 219 SGFGEASVYTVVRSDYLDKCPN 240
+ + +V ++ P
Sbjct: 239 TNHLPHLISLIVSDEFFQDLPE 260
>gi|222055562|ref|YP_002537924.1| ABC-type nitrate/sulfonate/bicarbonate transport systems
periplasmic components-like protein [Geobacter sp.
FRC-32]
gi|221564851|gb|ACM20823.1| ABC-type nitrate/sulfonate/bicarbonate transport systems
periplasmic components-like protein [Geobacter sp.
FRC-32]
Length = 346
Score = 36.4 bits (82), Expect = 6.4, Method: Composition-based stats.
Identities = 25/185 (13%), Positives = 54/185 (29%), Gaps = 31/185 (16%)
Query: 108 QGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMI-NNNKFSL 166
++M + +KS+ D+ K +L N + + + I + N
Sbjct: 129 PELRHMFWYVNPEKYPDVKSFADLKKLPGKLKFSTITN---NICSDFLANRIADKNGIPR 185
Query: 167 KGFRLIEASELASFSQIRRDQRNNIPAVFLSWEP-HPINSDLNIHYLPGGEEISGFGEAS 225
F + Q + + + V P + + E A
Sbjct: 186 DKFEWV----TMPDVQAIQALKQGLVDVAGVHPPFYKPMVISGARKISDSLETGLGPSAG 241
Query: 226 V-YTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLL 284
V +T R D+++K P++ R ++ + + HP++
Sbjct: 242 VSFTYFRDDFIEKHPDVVRGF-------------IRAMGRGGA--------WINDHPEMA 280
Query: 285 KNWLI 289
W
Sbjct: 281 AKWTS 285
>gi|118579965|ref|YP_901215.1| tungstate ABC transporter solute-binding protein [Pelobacter
propionicus DSM 2379]
gi|118502675|gb|ABK99157.1| ABC-type tungstate transport system, solute-binding protein
[Pelobacter propionicus DSM 2379]
Length = 287
Score = 36.4 bits (82), Expect = 6.4, Method: Composition-based stats.
Identities = 27/266 (10%), Positives = 66/266 (24%), Gaps = 13/266 (4%)
Query: 1 MYKI--------LAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEI 52
M K L + +S A S + A T T + + + E+
Sbjct: 1 MRKFKPLSRFTAFIATLAILACGLSSTAMAAS-RNLILATTTSTQDSGLLDVLIPLFEKQ 59
Query: 53 LGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKY 112
GY + + D+ + + + +KF+A ++ +
Sbjct: 60 SGYFVKTIAVGSGQAMAMGQKGEADVLLVHSPDAEKKFMAEQSGTSRKLVMHNDFVLVGP 119
Query: 113 MLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
+D G K+ + K A + + + + + +
Sbjct: 120 A---SDPAKLRGSKTSAEAFKKMAAHNALFLSRGDNSGTHAKEKGLWKAAAINPDNQKWY 176
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRS 232
+ + L + + + + V V +
Sbjct: 177 QQTGLGMGQTLSVA-DEKHGYTLTDRATYLALKKNLKLTIILEGDSKLLNIYHVIEVNST 235
Query: 233 DYLDKCPNISRLLKNIKFSVALENEM 258
+ +R + S + E+
Sbjct: 236 RWPKVNAAGARAFSDFMVSKKTQKEI 261
>gi|317054033|ref|YP_004118058.1| NMT1/THI5 like domain-containing protein [Pantoea sp. At-9b]
gi|316952028|gb|ADU71502.1| NMT1/THI5 like domain protein [Pantoea sp. At-9b]
Length = 310
Score = 36.0 bits (81), Expect = 6.5, Method: Composition-based stats.
Identities = 36/294 (12%), Positives = 73/294 (24%), Gaps = 46/294 (15%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGW----TDIAATTAMTSVILEEILGYK 56
M K+ V L + S A+ + W A A S ++ G
Sbjct: 1 MKKLGTVMTALLLLATSSVAQANEKVRLLL---DWFVNPNHAAIFAAQYSGAFKKE-GLD 56
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ A + L G + P L + + + +
Sbjct: 57 VEMIAPADSASVPLLLAAGKADLAISYQPQLYTLVDKDVPVIRVGTLINQPLNT------ 110
Query: 117 NDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASE 176
+ S K+ K G + I +M+ + +LI +
Sbjct: 111 --------LTSVSGDIHSLKDFAGKSLGYAIPGFEDVAIRNMLKSQGVDPDSVKLINLNM 162
Query: 177 LASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLD 236
A + + V+ ++E + + E+ + +
Sbjct: 163 DAVSALLTHKID-GAMTVYRNYELLDLKDKGAKPVVFKPEDFGVPAYDELIILANQKTAA 221
Query: 237 KCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDL-LKNWLI 289
+ I L+ + G LR HPD + ++
Sbjct: 222 QDKRIPAFLRGL----------------------DAGVAWLRAHPDQAWQAFIK 253
>gi|289551448|ref|YP_003472352.1| Deoxyribodipyrimidine photolyase [Staphylococcus lugdunensis
HKU09-01]
gi|289180979|gb|ADC88224.1| Deoxyribodipyrimidine photolyase [Staphylococcus lugdunensis
HKU09-01]
Length = 424
Score = 36.0 bits (81), Expect = 6.6, Method: Composition-based stats.
Identities = 10/144 (6%), Positives = 36/144 (25%), Gaps = 5/144 (3%)
Query: 41 TTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSI 100
+ +LE + N + + FR + + + S +
Sbjct: 236 INEIMRQLLERYHDNEENYEAFIRELLFREFYYVLMVYYPETAHTSFNDKYKHITWSENQ 295
Query: 101 KLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQR---ILD 157
+G + +K + + + A+ E + +
Sbjct: 296 SDFNAWKEGRTGYPII--DAAMHELKQTGFMHNRMRMVTAQFLTKELFIDWTWGENYFKN 353
Query: 158 MINNNKFSLKGFRLIEASELASFS 181
++ + + ++ + +
Sbjct: 354 LLIDYDAASNVHGWQWSASTGTDA 377
>gi|315650473|ref|ZP_07903543.1| cell wall binding repeat protein [Eubacterium saburreum DSM 3986]
gi|315487269|gb|EFU77581.1| cell wall binding repeat protein [Eubacterium saburreum DSM 3986]
Length = 433
Score = 36.0 bits (81), Expect = 6.7, Method: Composition-based stats.
Identities = 31/234 (13%), Positives = 58/234 (24%), Gaps = 39/234 (16%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAAT-------TAMTSVILEEIL 53
+ K+L S+S A V +A GW T + L+
Sbjct: 5 IKKMLVTGAISGLLSLSVAS-------VVYASNGWKSANGTWTYLNDNGQVHKGWLQASN 57
Query: 54 GYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
GY + L N + W K+ Y + I G ++
Sbjct: 58 GY-----------YYMDLSNG---VMTTGWKNIDSKWY--YFKSNGIMATGWFKVGNEWY 101
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGI-EPGNEGNQRILDMINNNKFSLKGFRLI 172
+ + G + + G G + + G+ +
Sbjct: 102 YTLGNGTLVQG----SWLKHDSNYYYLRGSGAMATGWRQMDGAWYYFKPDGRAAFGWTKV 157
Query: 173 EASELASFSQIRRDQR-NNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEAS 225
S + N I +F + + ++ G EA+
Sbjct: 158 GDKTYYFTSAAKMCTSWNKIDDIFYYFNSD---GSMKTGWVSDGTNKYYMEEAA 208
>gi|307709944|ref|ZP_07646391.1| bacterial extracellular solute-binding family protein
[Streptococcus mitis SK564]
gi|307711023|ref|ZP_07647445.1| bacterial extracellular solute-binding family protein
[Streptococcus mitis SK321]
gi|307616985|gb|EFN96163.1| bacterial extracellular solute-binding family protein
[Streptococcus mitis SK321]
gi|307619315|gb|EFN98444.1| bacterial extracellular solute-binding family protein
[Streptococcus mitis SK564]
gi|327390660|gb|EGE89000.1| bacterial extracellular solute-binding family protein
[Streptococcus pneumoniae GA04375]
Length = 348
Score = 36.0 bits (81), Expect = 6.8, Method: Composition-based stats.
Identities = 39/300 (13%), Positives = 86/300 (28%), Gaps = 51/300 (17%)
Query: 1 MYK--ILAVCLFLTTFSISYARDADSCTPVR---------FADTGWTDIAATTAMTSVIL 49
M K + L F ++ +S + ++ + +
Sbjct: 1 MKKKWMYYAACGLALFGLAACSSNESADGGSSDKGDGGSLVVYSPNSEGLIGATIPAF-- 58
Query: 50 EEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP---------------- 93
EE G K + F+ L+++ + A
Sbjct: 59 EEKYGIKVELIQAGTGELFKKLESEKEAPVADVIFGGSYTQYATHGELFENYTSKENDNV 118
Query: 94 -YLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGN 152
+ + ++ D+ + I+ Y D+ K EL KI +P N +
Sbjct: 119 IKEYQNTTGYSTPYTLDGSVLIVNPDLTKGMNIEGYSDLLK--PELKGKIATADPANSSS 176
Query: 153 -----------QRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPH 201
Q + F LI+ +S S + + + AV LS+E
Sbjct: 177 AFAQLTNMLQAQGGYKDDKAWSYVKDLFTLIDGKIGSSSSGVYKAVADGEMAVGLSYE-- 234
Query: 202 PINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP---NISRLLKNIKFSVALENEM 258
+ + + ++ E +V+ + + K N + + S +++ +
Sbjct: 235 --DPAVKLLNDGANIKVVYPKEGTVFLPASAAIVKKAKNMENAKKFID-FIISQEVQDTL 291
>gi|323499622|ref|ZP_08104591.1| maltose ABC transporter periplasmic protein [Vibrio sinaloensis DSM
21326]
gi|323315362|gb|EGA68404.1| maltose ABC transporter periplasmic protein [Vibrio sinaloensis DSM
21326]
Length = 392
Score = 36.0 bits (81), Expect = 6.9, Method: Composition-based stats.
Identities = 35/274 (12%), Positives = 70/274 (25%), Gaps = 31/274 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K+ + L + S A S + T E+ G K N++
Sbjct: 1 MKKLTLMSLGVACALNSVNVAAFSDGEITIWMPLDKGQKGMTYAVEQ-FEQDTGVKVNVE 59
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
F +F + + + G V +V
Sbjct: 60 ------------------FPESLEERFIQFASVGKGPDIMVFAHDRFGGYAEAGLVREVT 101
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
K+ + + P + ++ + + LK + I A +
Sbjct: 102 PEASFKAKFEPYSWDATSYKGKTYGYPIAAESVSLIYNKDLVQEPLKNWEDIFALDKELA 161
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPN 240
+ ++ AV + HP+ S + + + V T + N
Sbjct: 162 KKGKKAIA---WAVKTPYFTHPLYSSDGAYVFELNDTGFNPSKTGVNT-------PEAKN 211
Query: 241 ISRLLKNIKFSVALENE-MMKLILNNKQDRQFVG 273
LK I + + M ++ V
Sbjct: 212 TMAFLKRI-VDEGVMSADMDYAYSEGAFNKGEVA 244
>gi|68249286|ref|YP_248398.1| hypothetical protein NTHI0837 [Haemophilus influenzae 86-028NP]
gi|68057485|gb|AAX87738.1| hypothetical protein NTHI0837 [Haemophilus influenzae 86-028NP]
Length = 284
Score = 36.0 bits (81), Expect = 6.9, Method: Composition-based stats.
Identities = 17/175 (9%), Positives = 44/175 (25%), Gaps = 9/175 (5%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M K L L + ++ +D D+ ++ T + T L+E +
Sbjct: 1 MKKTLVAALISSVILLTGCQDKDTEAKIK--QLNQTVAQLSAENTK--LKEQIEKTVPAI 56
Query: 61 LLAVPVTFRSLK-----NKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLA 115
++ F + D + L+ + L +
Sbjct: 57 IVENDEIFNQSEIIKHPKSKEDYQPEETKIEYSISTIKTNIDWLNDLLWKKLTENEETKN 116
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
++ F ++ + K + + + + S +
Sbjct: 117 ISREQFVARYQTAFEEDKKEAKETPSFGISHSIWTNFIGQKEKLATFAISFYDYE 171
>gi|83944550|ref|ZP_00957001.1| hypothetical protein EE36_00040 [Sulfitobacter sp. EE-36]
gi|83844587|gb|EAP82473.1| hypothetical protein EE36_00040 [Sulfitobacter sp. EE-36]
Length = 361
Score = 36.0 bits (81), Expect = 6.9, Method: Composition-based stats.
Identities = 19/208 (9%), Positives = 55/208 (26%), Gaps = 27/208 (12%)
Query: 116 VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEAS 175
+ + + + + A + +P I S + +
Sbjct: 131 FDPLRAEWEDRHRSKVLYWTNWNYAPLILRDPITSLEDIKGKRIRAYGVSADVVEALGGT 190
Query: 176 ELASFS-QIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDY 234
+A + ++ + I ++ + P +I A T++
Sbjct: 191 AVAMAAPEVYQALERGILDGVYGFDFVTAIAYKLHEIAPQFYDIGDGPHAPAATIMNKRV 250
Query: 235 LDKCPNIS---------------------RLLKNIKFSVALENEMMKLILNNKQDRQFVG 273
D P+ +L + E + + + ++ +
Sbjct: 251 YDGLPDDVRKISDEIVDDIYGGQFSAIYEDVLATYVKTAEAEGVTLSTVSDEQK---AMA 307
Query: 274 RTMLRTHPDLLKNWLIGVTTFDGQDPSR 301
+ +++ P + +WL G D +
Sbjct: 308 KDLVQ--PAQVNSWLEDTAKPAGIDGAE 333
>gi|108802312|ref|YP_642509.1| ABC-type nitrate/sulfonate/bicarbonate transport systems
periplasmic components-like protein [Mycobacterium sp.
MCS]
gi|119871465|ref|YP_941417.1| ABC-type nitrate/sulfonate/bicarbonate transport systems
periplasmic components-like protein [Mycobacterium sp.
KMS]
gi|108772731|gb|ABG11453.1| ABC-type nitrate/sulfonate/bicarbonate transport systems
periplasmic components-like protein [Mycobacterium sp.
MCS]
gi|119697554|gb|ABL94627.1| ABC-type nitrate/sulfonate/bicarbonate transport systems
periplasmic components-like protein [Mycobacterium sp.
KMS]
Length = 329
Score = 36.0 bits (81), Expect = 7.0, Method: Composition-based stats.
Identities = 11/94 (11%), Positives = 20/94 (21%), Gaps = 7/94 (7%)
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEA-SVYTVVRSDYLDKCP 239
S + EPH + F + Y + + P
Sbjct: 186 SDMGEALERGDVDAIWVSEPHRTPGLNKGWKQIIAPGVQSFPDQIGGYYSTSQQFAESNP 245
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVG 273
+ R + E+ +N V
Sbjct: 246 EVVRKFR------EAMTEVNGFAQDNPDRVGEVA 273
>gi|226940319|ref|YP_002795393.1| C4-dicarboxylate-binding periplasmic protein [Laribacter
hongkongensis HLHK9]
gi|226715246|gb|ACO74384.1| Probable C4-dicarboxylate-binding periplasmic protein [Laribacter
hongkongensis HLHK9]
Length = 335
Score = 36.0 bits (81), Expect = 7.1, Method: Composition-based stats.
Identities = 24/300 (8%), Positives = 82/300 (27%), Gaps = 33/300 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADT---GWTDIAATTAMTSVILEEILGYKT 57
+ + L +S A ++F+ A + EE K
Sbjct: 3 LKRTLLAASIAVGLGLSPLAQAAGEIVIKFSHVVAADTPKGKA-AEYFKKLAEERTKGKV 61
Query: 58 NIKLLAVPVTFRSLKN---------KGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQ 108
+++ ++ + + + + + P K + +L
Sbjct: 62 KVQVYPNSQLYKDKEELEALQLGAVQMLAPSLAKFGPLGVKEFEVFDLPFIFDDYN-DLH 120
Query: 109 GAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE--PGNEGNQRILDMINNNKFSL 166
+ L K + +A + + + + L + ++
Sbjct: 121 KVTQGPVGQQLLAKLEPKGIKGLAFWDNGFKSFSANTPIKTPADLRGKKLRIQSSKVLEE 180
Query: 167 KGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV 226
+ L ++ +FS++ + + + + + ++ G+ +V
Sbjct: 181 EVRALGALPQVMAFSEVYQALQTGVVDGTENPPSNFYTQKMHEVQKHLSTTNHGYLGYAV 240
Query: 227 YTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKN 286
+V + D P + ++ + + + + + + + L++
Sbjct: 241 --IVNKKFWDGLPA------------DVRTQLDGAMKDATRYANDIAA---KENANDLES 283
>gi|157373265|ref|YP_001471865.1| extracellular solute-binding protein [Shewanella sediminis
HAW-EB3]
gi|157315639|gb|ABV34737.1| extracellular solute-binding protein, family 1 [Shewanella
sediminis HAW-EB3]
Length = 270
Score = 36.0 bits (81), Expect = 7.1, Method: Composition-based stats.
Identities = 15/96 (15%), Positives = 35/96 (36%), Gaps = 6/96 (6%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYKT 57
M + ++ F ++ A + ++ A T T+ + + +L E GYK
Sbjct: 1 MLNLKSIFSFALAATLVTGMPAQAEEIIKLATTTSTEN---SGLLKNLLPKFEAESGYKV 57
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP 93
+ + + +D+ M + + KF+
Sbjct: 58 QVIATGTGKALKLARQGDVDVIMTHAPAAEAKFVDE 93
>gi|126438294|ref|YP_001073985.1| ABC-type nitrate/sulfonate/bicarbonate transport systems
periplasmic components-like protein [Mycobacterium sp.
JLS]
gi|126238094|gb|ABO01495.1| ABC-type nitrate/sulfonate/bicarbonate transport systems
periplasmic components-like protein [Mycobacterium sp.
JLS]
Length = 329
Score = 36.0 bits (81), Expect = 7.1, Method: Composition-based stats.
Identities = 11/94 (11%), Positives = 20/94 (21%), Gaps = 7/94 (7%)
Query: 181 SQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEA-SVYTVVRSDYLDKCP 239
S + EPH + F + Y + + P
Sbjct: 186 SDMGEALERGDVDAIWVSEPHRTPGLNKGWKQIIAPGVQSFPDQIGGYYSTSQQFAESNP 245
Query: 240 NISRLLKNIKFSVALENEMMKLILNNKQDRQFVG 273
+ R + E+ +N V
Sbjct: 246 EVVRKFR------EAMTEVNGFAQDNPDRVGEVA 273
>gi|15674455|ref|NP_268629.1| putative glutamine-binding periplasmic protein [Streptococcus
pyogenes M1 GAS]
gi|13621552|gb|AAK33350.1| putative glutamine-binding periplasmic protein [Streptococcus
pyogenes M1 GAS]
Length = 522
Score = 36.0 bits (81), Expect = 7.1, Method: Composition-based stats.
Identities = 30/291 (10%), Positives = 68/291 (23%), Gaps = 27/291 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFAD------TGWTDIAATTAMTSVILEE--- 51
M K++ CL A + +R WT A+ +V +E
Sbjct: 1 MKKLILSCLVALALLFGGMSRAQANQYLRVGMEAAYAPFNWTQDDASNG--AVPIEGTSQ 58
Query: 52 -ILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGA 110
GY + + L + G I S N
Sbjct: 59 YANGYDVQVAKKVAKAMNKELLV-VKTSWTGLIPALTSGKIDMIAAGMSPTKERRNEISF 117
Query: 111 KYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFR 170
+ + A K+ + G + +
Sbjct: 118 SNSSYTSQPVLVVTANGKYADATSLKDFSGAKVTAQQGVWHVNLLTQLKGAK--LQTPMG 175
Query: 171 LIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVV 230
A S + + P + + + + E+ V
Sbjct: 176 DFSQMRQALTSGVIDAYISERPEAMTAEAADSRLKMITLK------KGFAVAESDAAIAV 229
Query: 231 -RSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNK---QDRQFVGRTML 277
D+ ++++L+ + + +M ++ + + + + L
Sbjct: 230 GMKKNDDRMATVNQVLEGFSQTDRM--ALMDDMVTKQPVEKKAEDAKASFL 278
>gi|15613772|ref|NP_242075.1| ABC transporter (substrate-binding protein) [Bacillus halodurans
C-125]
gi|10173825|dbj|BAB04928.1| ABC transporter (substrate-binding protein) [Bacillus halodurans
C-125]
Length = 336
Score = 36.0 bits (81), Expect = 7.2, Method: Composition-based stats.
Identities = 48/297 (16%), Positives = 86/297 (28%), Gaps = 41/297 (13%)
Query: 17 SYARDADSCTPVRFAD-TGWTDIAATTAMTSVILEEILGY-KTNIKLLAVPVTFRSLKNK 74
S + + V AA E LG K F +
Sbjct: 24 SSSTSGEEDQDVTIGYFPNLDHAAAIVGKEKGFFAEELGEEKVEFTHFPNGNDFIEALS- 82
Query: 75 GIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKY 134
+ Y I YL G + ++ GA L V G + D +
Sbjct: 83 --TGSIDIGYVGPGPAINYYLTGGDVVVLGSAANGAT--LIVARDGSGIDTLDDFDGKSF 138
Query: 135 KKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRL---IEASELASFSQIRRDQRNNI 191
PGN + I + L+ R+ +E + S +
Sbjct: 139 ----------CTPGNGCTHNVQLEIMLKELGLESNRVGGTVEHQSRIAPSNMVAMFEQGQ 188
Query: 192 PAVFLSWEP--HPINSDLNIHYLPGGEEISGFGE-ASVYTVVRSDYLDKCPNISRLL--- 245
+ EP + +L H + ++ E ASV V ++L+ P
Sbjct: 189 IDAAAAPEPWGTYLVEELGAHVVAEWNDVFLGEELASVVVVTTREFLENHPEQVEAFLRA 248
Query: 246 --KNIKF-------SVALENEMMKLILNNKQDRQFVGRTM------LRTHPDLLKNW 287
K+++F ++ N+ + + N+ + + T+PD L+ W
Sbjct: 249 HVKSVEFAQEDVDATLETVNDALFDLTQNRLPEDVLYKAWERMAVTTDTYPDALQAW 305
>gi|51244389|ref|YP_064273.1| hypothetical protein DP0537 [Desulfotalea psychrophila LSv54]
gi|50875426|emb|CAG35266.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
Length = 313
Score = 36.0 bits (81), Expect = 7.3, Method: Composition-based stats.
Identities = 27/248 (10%), Positives = 53/248 (21%), Gaps = 56/248 (22%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRF--------------------ADTGWTDI-- 38
M KIL + L + A+D P+ A W +
Sbjct: 1 MKKILILLAILMFAMPALAKDYPGKKPITIIVPSKAGGSTDASARLFIQSAKKFWPEANF 60
Query: 39 -----------------------------AATTAMTSVILEEILGYKTNIKLLAVPVTFR 69
TT + + I+ + Y L
Sbjct: 61 VIKNVPGSGGQKGFEEIARAKANGHTIGMVFTTQVVAHIVSKRARYT-----LDSFHVMG 115
Query: 70 SLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQ 129
++ + + + + A N G+ +A + IK
Sbjct: 116 NVMQDPLIVAVPTDSNITNMSQFIKAAKAGSLTTAVNGIGSDDFIAAKKIEKMADIKFNL 175
Query: 130 DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRN 189
K E A I G + + +++ S + +
Sbjct: 176 MPTKGSTEQKAMILGAHVDASIMNLSQLQAQHKAGKARIIAILDGSRSPIIADVPTAIEQ 235
Query: 190 NIPAVFLS 197
+
Sbjct: 236 GFEVTMTA 243
>gi|262276180|ref|ZP_06053989.1| ABC-type tungstate transport system binding protein [Grimontia
hollisae CIP 101886]
gi|262219988|gb|EEY71304.1| ABC-type tungstate transport system binding protein [Grimontia
hollisae CIP 101886]
Length = 270
Score = 36.0 bits (81), Expect = 7.4, Method: Composition-based stats.
Identities = 29/273 (10%), Positives = 65/273 (23%), Gaps = 32/273 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYKT 57
M K+ L F+ S + +R A T + + +L ++ GY
Sbjct: 6 MNKMKVFALITFLFTFSVNAE----EVIRLAT---TTSTYHSGLLDYLLPEFKKETGYDV 58
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYP-------SLEKFIAPYLEEGSIKLVAENLQGA 110
I + +N +D+ M + + + L LV A
Sbjct: 59 QILAAGTGKALKMGENGDVDLVMTHAPNAEARFVENGFGVLPRRLMYNDFVLVGPASDPA 118
Query: 111 --KYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
K V + + + I++ K + G + + +
Sbjct: 119 KVKGTADVTEALKKIASANANFISRGDDSGTNKKELLLWEAAGQRPEFNAYKAIGQGMGP 178
Query: 169 FRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYT 228
+ + + + L ++ + Y
Sbjct: 179 TLTMANEMQGYT------LTDRGTWLAYQSKLDLNVLVEGDKRLFNPYQVIIVNPSR-YP 231
Query: 229 VVRSDYLDK------CPNISRLLKNIKFSVALE 255
+ + P L+ K +
Sbjct: 232 DMNYKGAKEFSDWLVNPKAQSLINAFKVNGEQL 264
>gi|226320362|ref|ZP_03795931.1| spermidine/putrescine ABC transporter,
spermidine/putrescine-binding periplasmic protein
[Borrelia burgdorferi 29805]
gi|226234225|gb|EEH32937.1| spermidine/putrescine ABC transporter,
spermidine/putrescine-binding periplasmic protein
[Borrelia burgdorferi 29805]
Length = 178
Score = 36.0 bits (81), Expect = 7.4, Method: Composition-based stats.
Identities = 21/194 (10%), Positives = 51/194 (26%), Gaps = 23/194 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M KI + LTTF+ + + + W + T + E + I
Sbjct: 1 MKKIFILIAILTTFACT------NKDTITLNVFNWAEYIDETLLDQFEKENNIKINYEIF 54
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ + K + +++ I E N+
Sbjct: 55 HNNEEMMAKFNNTKNYYDIIVPSEYLIQELIDEGKIEKLDYSKLPNVT------------ 102
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
K+ + +Y + + + + ++GF ++ +
Sbjct: 103 -----KNITQNLTNLEHDPGNLYSVPAYWGLMGILYNKTKIDLNDMQGFDILFNKKYKKE 157
Query: 181 SQIRRDQRNNIPAV 194
+ ++NI
Sbjct: 158 ITMLDSPKDNIGVA 171
>gi|123967322|ref|XP_001276853.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121918839|gb|EAY23605.1| hypothetical protein TVAG_119410 [Trichomonas vaginalis G3]
Length = 269
Score = 36.0 bits (81), Expect = 7.5, Method: Composition-based stats.
Identities = 8/102 (7%), Positives = 27/102 (26%), Gaps = 15/102 (14%)
Query: 185 RDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP-NISR 243
++ F P + + A + Y + P + +
Sbjct: 173 AAVKSGDIVAFTYDHP----CMPQNKSKTDPRKDDVYSAALWFL----SYFNDNPYDALK 224
Query: 244 LLKNIKFSVA---LENEMMKLILNNKQDRQFVGR---TMLRT 279
++ ++ + ++ N + D + + L+
Sbjct: 225 NIEKLQLPKEIVSVLQQLTAEKENERLDAEKAAQLVSEYLKK 266
>gi|40804939|gb|AAR91732.1| PhnD [Pseudomonas stutzeri]
Length = 334
Score = 36.0 bits (81), Expect = 7.6, Method: Composition-based stats.
Identities = 16/137 (11%), Positives = 38/137 (27%), Gaps = 4/137 (2%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEE---ILGYKT 57
+ + T + + A A + + F ++ L + GY+
Sbjct: 2 LKRFSRALAASTLLAGALAGTAQAAETITFGIISTESSQNLRSVWEPFLADMSKQTGYEV 61
Query: 58 NIKLLA-VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ ++ +D+ ++E E + + A G L V
Sbjct: 62 KAFFAPDYAGVIQGMRFDKVDLAWYGNKSAMEAVDRAGGEIFAQTVAANGSPGYYSHLIV 121
Query: 117 NDVGFALGIKSYQDIAK 133
+ ++ AK
Sbjct: 122 HKDSALNSVEDVLKNAK 138
>gi|224534470|ref|ZP_03675046.1| spermidine/putrescine ABC transporter,
spermidine/putrescine-binding periplasmic protein
[Borrelia spielmanii A14S]
gi|224514147|gb|EEF84465.1| spermidine/putrescine ABC transporter,
spermidine/putrescine-binding periplasmic protein
[Borrelia spielmanii A14S]
Length = 348
Score = 36.0 bits (81), Expect = 7.6, Method: Composition-based stats.
Identities = 21/194 (10%), Positives = 50/194 (25%), Gaps = 23/194 (11%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M KI + LTTF+ + + W + T + E + I
Sbjct: 1 MKKIFILIAILTTFTCT------KKDTITLNVFNWAEYIDETLLDQFEKENNIKINYEIF 54
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ + K + +++ I E N+
Sbjct: 55 HNNEEMIAKFNTTKNYYDIIVPSEYLIQELIDEGKIEKLDYSKLPNVT------------ 102
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
K+ + +Y + + + + ++GF ++ +
Sbjct: 103 -----KNISQNLTNLEHDPGNLYSVPAYWGLMGILYNKTKIDLNDMQGFDILFNKKYKKE 157
Query: 181 SQIRRDQRNNIPAV 194
+ ++NI
Sbjct: 158 ITMLDSPKDNIGVA 171
>gi|126444436|ref|YP_001063216.1| taurine ABC transporter periplasmic taurine-binding protein
[Burkholderia pseudomallei 668]
gi|126223927|gb|ABN87432.1| taurine ABC transporter, periplasmic taurine-binding protein
[Burkholderia pseudomallei 668]
Length = 336
Score = 36.0 bits (81), Expect = 7.8, Method: Composition-based stats.
Identities = 28/251 (11%), Positives = 63/251 (25%), Gaps = 19/251 (7%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+ +IL F + + A V A D A E+ G+K N
Sbjct: 3 LKRILIAASFTAAAASAVHSHAARAETVNVAYQYGADPAKLAQ-AGAAYEKATGWKIN-- 59
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+R + + + ++ A +
Sbjct: 60 -------WRRFDSGADVVAALASGDVQLGDVGQSPFAAAVSRGVPIQAVALNAI---TGV 109
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ +L K + + +L + + + +++
Sbjct: 110 SEALVVRRGAHIDKPADLVGKTIATPYASNCHYALLAALKHWGIDAQRVKIVNLGP---- 165
Query: 181 SQIRRDQRNNIPAVFLSWEPH-PINSDLNIHYLPGGEEISGFGEASVY-TVVRSDYLDKC 238
++I + +W+P L E+ +G + VRSD+
Sbjct: 166 TEIVAAWARGVIDAAYTWDPALGRAKASGGKVLVDSAEVGKWGAPTFDLWAVRSDFAQAH 225
Query: 239 PNISRLLKNIK 249
P+ +
Sbjct: 226 PDFVSKFVKVT 236
>gi|83943668|ref|ZP_00956126.1| sulfonate ABC transporter, periplamic sulfonate-binding protein
[Sulfitobacter sp. EE-36]
gi|83845348|gb|EAP83227.1| sulfonate ABC transporter, periplamic sulfonate-binding protein
[Sulfitobacter sp. EE-36]
Length = 339
Score = 36.0 bits (81), Expect = 7.9, Method: Composition-based stats.
Identities = 26/279 (9%), Positives = 60/279 (21%), Gaps = 24/279 (8%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKL 61
+ + A + +T + T + G +K
Sbjct: 6 RRQTLATMGAAAAVGLAAPAVAQGKKITLGALRFTSHSGTFVAYQREYFKQAGLDVELKF 65
Query: 62 LA-VPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
++ + +D + L + ++E +D
Sbjct: 66 FQAAQPMAVAIASGDVDYAVTAISGGLVSLADKGAIKVIGGALSEEKGIDGQKFLASDAA 125
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASF 180
+ G+ + + G G+ + M L L +
Sbjct: 126 YQAGVTAPAMLD------GKSFGMTTAGSSFHYMGSKMAQAEGIELSFKPLQK------V 173
Query: 181 SQIRRDQRNNIPAVFLSWE--PHPINSDLNIHYLPGGEEISGF-GEASVYTV--VRSDYL 235
I + W PH + +S + + V TV +
Sbjct: 174 GAIIGALKTGQID---GWSIVPHIAKPLAGSGAVHIIGNVSDYLPDYQVTTVFTSTKNAT 230
Query: 236 DKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGR 274
D+ L + ++ + V
Sbjct: 231 DEKQQTQDYLAAY---AKGVADYNAAMIEQTAGAEGVAE 266
>gi|261253957|ref|ZP_05946530.1| ABC transporter substrate-binding protein-related protein [Vibrio
orientalis CIP 102891]
gi|260937348|gb|EEX93337.1| ABC transporter substrate-binding protein-related protein [Vibrio
orientalis CIP 102891]
Length = 243
Score = 36.0 bits (81), Expect = 8.0, Method: Composition-based stats.
Identities = 17/123 (13%), Positives = 32/123 (26%), Gaps = 10/123 (8%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWT---DIAA--TTAMTSVILEE---I 52
M K L L + S + A +R A W + +E+
Sbjct: 1 MNKYLKAISMLFLLTSSTSFAATDDKIIRIAAGEWPPFIGQQLEGFGHV-GQTIEKVFAA 59
Query: 53 LGYKTNIKLLAVPVTFRSLKNKGIDIFMGY-WYPSLEKFIAPYLEEGSIKLVAENLQGAK 111
GY+ ++ + + E+F K V +L+
Sbjct: 60 QGYQVEFHFFPWKRAYKKASEGKFVATAVWMYAEEREEFFWFSDPVAQEKFVFFHLRDTP 119
Query: 112 YML 114
+
Sbjct: 120 FEW 122
>gi|254474930|ref|ZP_05088316.1| phosphonate ABC transporter, periplasmic phosphonate binding
protein [Ruegeria sp. R11]
gi|214029173|gb|EEB70008.1| phosphonate ABC transporter, periplasmic phosphonate binding
protein [Ruegeria sp. R11]
Length = 302
Score = 36.0 bits (81), Expect = 8.0, Method: Composition-based stats.
Identities = 32/207 (15%), Positives = 50/207 (24%), Gaps = 16/207 (7%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIA---ATTAMTSVILEEILGYKT 57
M ++ A L T + + R G + E +LG +T
Sbjct: 1 MKRLFAAILATTAMTAPAVAETTEIKEFRIGILGGENAQDRLNNNECLRERTEALLGVET 60
Query: 58 NI-KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAV 116
+ + L ID+ K E LV N G +V
Sbjct: 61 KLFAPADYNGVIQGLLGGTIDMAW-LGASGYAKTYLSDPEAVEPILVKVNNDGGYGYYSV 119
Query: 117 NDVGFALGIKSYQDIAKYKKEL----GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLI 172
GI S +D+ + I N M + + F F
Sbjct: 120 GFARKDSGITSLEDVKGKVFGFGDPNSTSGFLIPSIEIPNAIGATMTSGDYFGEVKF--- 176
Query: 173 EASELASFSQIRRDQRNNIPAVFLSWE 199
Q N ++W
Sbjct: 177 ----TGGHEQTIVAVNNGDVDAGVTWA 199
>gi|237509148|ref|ZP_04521863.1| taurine ABC transporter, periplasmic binding protein [Burkholderia
pseudomallei MSHR346]
gi|235001353|gb|EEP50777.1| taurine ABC transporter, periplasmic binding protein [Burkholderia
pseudomallei MSHR346]
Length = 336
Score = 36.0 bits (81), Expect = 8.1, Method: Composition-based stats.
Identities = 31/252 (12%), Positives = 66/252 (26%), Gaps = 21/252 (8%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-I 59
+ +IL F + + A V A D A E+ G+K N
Sbjct: 3 LKRILIAASFTAAAASAVHSHAARAETVNVAYQYGADPAKLAQ-AGAAYEKATGWKINWR 61
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ + +L + + + P + + G L V
Sbjct: 62 RFDSGADVVAALASGDVQLGDVGQSPFTAAVSRGVPIQAVALNA---ITGVSEALVVR-- 116
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+L K + + +L + + + +++
Sbjct: 117 --------RGAHIDKPADLVGKTIATPYASNCHYALLAALKHWGIDAQRVKIVNLGP--- 165
Query: 180 FSQIRRDQRNNIPAVFLSWEPH-PINSDLNIHYLPGGEEISGFGEASVY-TVVRSDYLDK 237
++I + +W+P L E+ +G + VRSD+
Sbjct: 166 -TEIVAAWARGVIDAAYTWDPALGRAKASGGKVLVDSAEVGKWGAPTFDLWAVRSDFAQA 224
Query: 238 CPNISRLLKNIK 249
P+ +
Sbjct: 225 HPDFVSKFVKVT 236
>gi|53722595|ref|YP_111580.1| periplasmic component of taurine ABC transporter [Burkholderia
pseudomallei K96243]
gi|76818635|ref|YP_335781.1| taurine ABC transporter periplasmic binding protein [Burkholderia
pseudomallei 1710b]
gi|126457537|ref|YP_001076168.1| taurine ABC transporter periplasmic taurine-binding protein
[Burkholderia pseudomallei 1106a]
gi|134282137|ref|ZP_01768843.1| taurine ABC transporter, periplasmic taurine-binding protein
[Burkholderia pseudomallei 305]
gi|167724291|ref|ZP_02407527.1| taurine ABC transporter, periplasmic taurine-binding protein
[Burkholderia pseudomallei DM98]
gi|167736817|ref|ZP_02409591.1| taurine ABC transporter, periplasmic taurine-binding protein
[Burkholderia pseudomallei 14]
gi|167820441|ref|ZP_02452121.1| taurine ABC transporter, periplasmic taurine-binding protein
[Burkholderia pseudomallei 91]
gi|167828810|ref|ZP_02460281.1| taurine ABC transporter, periplasmic taurine-binding protein
[Burkholderia pseudomallei 9]
gi|167850269|ref|ZP_02475777.1| taurine ABC transporter, periplasmic taurine-binding protein
[Burkholderia pseudomallei B7210]
gi|167915557|ref|ZP_02502648.1| taurine ABC transporter, periplasmic taurine-binding protein
[Burkholderia pseudomallei 112]
gi|167923400|ref|ZP_02510491.1| taurine ABC transporter, periplasmic taurine-binding protein
[Burkholderia pseudomallei BCC215]
gi|217425125|ref|ZP_03456620.1| taurine ABC transporter, periplasmic taurine-binding protein
[Burkholderia pseudomallei 576]
gi|226195955|ref|ZP_03791541.1| taurine ABC transporter, periplasmic taurine-binding protein
[Burkholderia pseudomallei Pakistan 9]
gi|242311764|ref|ZP_04810781.1| taurine ABC transporter, periplasmic taurine-binding protein
[Burkholderia pseudomallei 1106b]
gi|254185127|ref|ZP_04891716.1| taurine ABC transporter, periplasmic taurine-binding protein
[Burkholderia pseudomallei 1655]
gi|254186903|ref|ZP_04893419.1| taurine ABC transporter, periplasmic taurine-binding protein
[Burkholderia pseudomallei Pasteur 52237]
gi|254193872|ref|ZP_04900304.1| taurine ABC transporter, periplasmic taurine-binding protein
[Burkholderia pseudomallei S13]
gi|254265497|ref|ZP_04956362.1| taurine ABC transporter, periplasmic taurine-binding protein
[Burkholderia pseudomallei 1710a]
gi|52213009|emb|CAH39047.1| periplasmic component of taurine ABC transporter [Burkholderia
pseudomallei K96243]
gi|76583108|gb|ABA52582.1| taurine ABC transporter, periplasmic binding protein [Burkholderia
pseudomallei 1710b]
gi|126231305|gb|ABN94718.1| taurine ABC transporter, periplasmic taurine-binding protein
[Burkholderia pseudomallei 1106a]
gi|134246666|gb|EBA46754.1| taurine ABC transporter, periplasmic taurine-binding protein
[Burkholderia pseudomallei 305]
gi|157934587|gb|EDO90257.1| taurine ABC transporter, periplasmic taurine-binding protein
[Burkholderia pseudomallei Pasteur 52237]
gi|169650623|gb|EDS83316.1| taurine ABC transporter, periplasmic taurine-binding protein
[Burkholderia pseudomallei S13]
gi|184215719|gb|EDU12700.1| taurine ABC transporter, periplasmic taurine-binding protein
[Burkholderia pseudomallei 1655]
gi|217391730|gb|EEC31757.1| taurine ABC transporter, periplasmic taurine-binding protein
[Burkholderia pseudomallei 576]
gi|225931848|gb|EEH27849.1| taurine ABC transporter, periplasmic taurine-binding protein
[Burkholderia pseudomallei Pakistan 9]
gi|242135003|gb|EES21406.1| taurine ABC transporter, periplasmic taurine-binding protein
[Burkholderia pseudomallei 1106b]
gi|254216499|gb|EET05884.1| taurine ABC transporter, periplasmic taurine-binding protein
[Burkholderia pseudomallei 1710a]
Length = 336
Score = 36.0 bits (81), Expect = 8.1, Method: Composition-based stats.
Identities = 31/252 (12%), Positives = 66/252 (26%), Gaps = 21/252 (8%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTN-I 59
+ +IL F + + A V A D A E+ G+K N
Sbjct: 3 LKRILIAASFTAAAASAVHSHAARAETVNVAYQYGADPAKLAQ-AGAAYEKATGWKINWR 61
Query: 60 KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDV 119
+ + +L + + + P + + G L V
Sbjct: 62 RFDSGADVVAALASGDVQLGDVGQSPFTAAVSRGVPIQAVALNA---ITGVSEALVVR-- 116
Query: 120 GFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+L K + + +L + + + +++
Sbjct: 117 --------RGAHIDKPADLVGKTIATPYASNCHYALLAALKHWGIDAQRVKIVNLGP--- 165
Query: 180 FSQIRRDQRNNIPAVFLSWEPH-PINSDLNIHYLPGGEEISGFGEASVY-TVVRSDYLDK 237
++I + +W+P L E+ +G + VRSD+
Sbjct: 166 -TEIVAAWARGVIDAAYTWDPALGRAKASGGKVLVDSAEVGKWGAPTFDLWAVRSDFAQA 224
Query: 238 CPNISRLLKNIK 249
P+ +
Sbjct: 225 HPDFVSKFVKVT 236
>gi|319778936|ref|YP_004129849.1| TRAP-type C4-dicarboxylate transport system, periplasmic component
[Taylorella equigenitalis MCE9]
gi|317108960|gb|ADU91706.1| TRAP-type C4-dicarboxylate transport system, periplasmic component
[Taylorella equigenitalis MCE9]
Length = 331
Score = 36.0 bits (81), Expect = 8.1, Method: Composition-based stats.
Identities = 27/282 (9%), Positives = 82/282 (29%), Gaps = 26/282 (9%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAAT-------TAMTSVILEEIL 53
M L + ++ + + P+ ++ + A+ + + EE
Sbjct: 1 MKPFFLKALSIVALGCAFVSPSFAEEPIVI---KFSHVVASDTPKGKGADLFKKLAEEKF 57
Query: 54 GYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLE-KFIAPYLEEGSIKLVAENLQG--A 110
+ ++ + K + + + Y ++ + + G A
Sbjct: 58 PGRVKVETFPNSSLYGDGKEMEALLTGNVQMLAPSLAKFSKYQKKIQLFDLPFLFDGPEA 117
Query: 111 KYMLAVNDVGFA----LGIKSYQDIAKYKKELGAKIYGIEPG--NEGNQRILDMINNNKF 164
+D G + K +A + + ++ + ++
Sbjct: 118 LEKFETSDKGKELLNSMHDKGIIGLAYWNNDFKHMSANKPLRKPSDARGLKFRVQASDVL 177
Query: 165 SLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEA 224
+ RL +F+++ + ++ + P+ +H + +G
Sbjct: 178 DAQFKRLTAIPRKMAFAEVYQGLQSGVVDGTE--NPYSNIYSQKMHEVQKYITETGHAPL 235
Query: 225 SVYTVVRSDYLDKCPN-----ISRLLKNIKFSVALENEMMKL 261
+ + S + D P +S +L + +V E + +
Sbjct: 236 AYMVITSSKFWDGLPEDIRTGLSDILAEVTKTVNQEAQALNQ 277
>gi|169343851|ref|ZP_02864848.1| sugar ABC transporter, sugar-binding protein [Clostridium
perfringens C str. JGS1495]
gi|169297971|gb|EDS80062.1| sugar ABC transporter, sugar-binding protein [Clostridium
perfringens C str. JGS1495]
Length = 419
Score = 36.0 bits (81), Expect = 8.2, Method: Composition-based stats.
Identities = 25/175 (14%), Positives = 51/175 (29%), Gaps = 13/175 (7%)
Query: 2 YKILAVCLFLTTFSISY--------ARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL 53
KIL+ L + + + + A V+ T W + M + E++
Sbjct: 3 KKILSAILCMMIGATAMVGCGDKTDSTQAKDGGKVKLRMTNWNNEDTMKDMLKYLSEKLP 62
Query: 54 GYKTNIKLLAVPVT-----FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQ 108
+ + + + +G DI +L+ YLE + +
Sbjct: 63 NVEIEYQFIDNSNYNTIVDTQLSAEEGPDIICESPASALKHAKLGYLENVNDLAKKYSDS 122
Query: 109 GAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK 163
G N+V GI ++ I +K I + + +
Sbjct: 123 GTNVYKYDNNVYALPGISWFEGIYYNEKLFEENNIQIPKTFDEYIEVCKKFQSLG 177
>gi|320179404|gb|EFW54361.1| Molybdenum ABC transporter, periplasmic molybdenum-binding protein
ModA [Shigella boydii ATCC 9905]
Length = 257
Score = 36.0 bits (81), Expect = 8.4, Method: Composition-based stats.
Identities = 26/264 (9%), Positives = 62/264 (23%), Gaps = 18/264 (6%)
Query: 1 MYKILAVCLFLTTFSISYARDA-DSCTPVRFADTGWTDIAATTAM--TSVILEEILGYKT 57
M + S + A A + + + T AM + ++ G
Sbjct: 1 MARKWLNLFSGAALSFAVAGKALADEGKITV----FAAASLTNAMQDIATQYKKEKGVDV 56
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
+ R ++ + + +K++ +++ +I + ++ V
Sbjct: 57 VSSFASSSTLARQIEAGAP---ADLFISADQKWMDYAVDKKAIDTASRQTLLGNSLVVVA 113
Query: 118 DVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASEL 177
+ L + I K + +
Sbjct: 114 PKASEQKDFIIDSTTNWTSLLNGGRLAVGDPEYVPAGIYAKEALQKLGAWDTLSPKLAPA 173
Query: 178 ASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTV------VR 231
N + + + + S E+ E V V
Sbjct: 174 EDVRGALALVERNEAPLGIVYGSDAVASKGVKVVATFPEDSHKKVEYPVAVVEGHNNATV 233
Query: 232 SDYLD--KCPNISRLLKNIKFSVA 253
+ D K P + + K F+
Sbjct: 234 KAFYDYLKGPQAAEIFKRYGFTTK 257
>gi|110798641|ref|YP_695559.1| sugar ABC transporter, sugar-binding protein [Clostridium
perfringens ATCC 13124]
gi|168209463|ref|ZP_02635088.1| sugar ABC transporter, sugar-binding protein [Clostridium
perfringens B str. ATCC 3626]
gi|182625149|ref|ZP_02952925.1| conserved hypothetical protein [Clostridium perfringens D str.
JGS1721]
gi|110673288|gb|ABG82275.1| sugar ABC transporter, sugar-binding protein [Clostridium
perfringens ATCC 13124]
gi|170712315|gb|EDT24497.1| sugar ABC transporter, sugar-binding protein [Clostridium
perfringens B str. ATCC 3626]
gi|177909608|gb|EDT72042.1| conserved hypothetical protein [Clostridium perfringens D str.
JGS1721]
Length = 419
Score = 35.6 bits (80), Expect = 8.7, Method: Composition-based stats.
Identities = 25/175 (14%), Positives = 51/175 (29%), Gaps = 13/175 (7%)
Query: 2 YKILAVCLFLTTFSISY--------ARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL 53
KIL+ L + + + + A V+ T W + M + E++
Sbjct: 3 KKILSAILCMMIGATAMVGCGDKTDSTQAKDGGKVKLRMTNWNNEDTMKDMLKYLSEKLP 62
Query: 54 GYKTNIKLLAVPVT-----FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQ 108
+ + + + +G DI +L+ YLE + +
Sbjct: 63 NVEIEYQFIDNSNYNTIVDTQLSAEEGPDIICESPASALKHAKLGYLENVNDLAKKYSDS 122
Query: 109 GAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK 163
G N+V GI ++ I +K I + + +
Sbjct: 123 GTNVYKYDNNVYALPGISWFEGIYYNEKLFEENNIQIPKTFDEYIEVCKKFQSLG 177
>gi|73541634|ref|YP_296154.1| lipoprotein YaeC [Ralstonia eutropha JMP134]
gi|72119047|gb|AAZ61310.1| Lipoprotein YaeC [Ralstonia eutropha JMP134]
Length = 271
Score = 35.6 bits (80), Expect = 8.8, Method: Composition-based stats.
Identities = 25/252 (9%), Positives = 56/252 (22%), Gaps = 9/252 (3%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
+YK LAV + F + + +R D + + L K ++
Sbjct: 6 LYKRLAVAVSAVGFIAAAGNASAQEQTIRVGTVSGPDAEVWQVVQKAAKKNGLNVKV-VE 64
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM--LAVND 118
+L +D P L+ I + Y L
Sbjct: 65 FNDYVQPNAALDAGDLDANSFQHQPYLDSQIKQRGYKMVSVGYTYISPLGIYSKNLKSPK 124
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ + + + + N +
Sbjct: 125 DLAQGAKVAVPNDPSNENRALLLLQAQGVIKLKAGAGTNGANATPLDVAENPKKLKIVEL 184
Query: 179 SFSQIRRDQRN-NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDK 237
+Q+ R + + ++ A++ V D
Sbjct: 185 DAAQLARALPDVGAAVINTNYALAAGLQPTRNAIALEDIH---SPYANIIVVRTQD--KD 239
Query: 238 CPNISRLLKNIK 249
P + +L+ +
Sbjct: 240 KPWVKKLVAAYQ 251
>gi|237740104|ref|ZP_04570585.1| sulfate ester binding protein [Fusobacterium sp. 2_1_31]
gi|229422121|gb|EEO37168.1| sulfate ester binding protein [Fusobacterium sp. 2_1_31]
Length = 345
Score = 35.6 bits (80), Expect = 8.8, Method: Composition-based stats.
Identities = 29/302 (9%), Positives = 78/302 (25%), Gaps = 59/302 (19%)
Query: 3 KILAVCLFLTTFSISYARDADSC-----------TPVRFADTGWTDIAATT--------A 43
KIL + L + + D V G ++
Sbjct: 9 KILIGLIALIVLAFGPFKPKDKNNENVNTAEVNLKKVIIGLPGISNQTLEATGIAVNKGY 68
Query: 44 MTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLV 103
+ + + +GY+ + I + + + + + V
Sbjct: 69 IAEEL--KKVGYEPEFIYFQQAGPAVNEALATNKIDIAMYGDFPITILKSNGGDVKVFAV 126
Query: 104 AENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK 163
+++M V + D K K+L K G + +++
Sbjct: 127 ----DNSRFMYGV--------LVQNDDNIKSIKDLEGKKVLYRKGTVEQKFFKEILKKYN 174
Query: 164 FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGE 223
+ + + + Q + + + S + + G
Sbjct: 175 LDE--DKFVSVNAGGADGQSIFSAKEAEAIFTFYYTVLYMESKGLGKVIDSTLDKPEVGT 232
Query: 224 ASVYTVVRSDYLDKCPNIS-RLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPD 282
S+ V R+ +L++ P+ + ++K + + + +P+
Sbjct: 233 QSLA-VGRTKFLEENPDAAVAIIKAL----------------------ERAKDFAKENPE 269
Query: 283 LL 284
+
Sbjct: 270 EV 271
>gi|168216044|ref|ZP_02641669.1| sugar ABC transporter, sugar-binding protein [Clostridium
perfringens NCTC 8239]
gi|182381707|gb|EDT79186.1| sugar ABC transporter, sugar-binding protein [Clostridium
perfringens NCTC 8239]
Length = 419
Score = 35.6 bits (80), Expect = 8.8, Method: Composition-based stats.
Identities = 25/175 (14%), Positives = 51/175 (29%), Gaps = 13/175 (7%)
Query: 2 YKILAVCLFLTTFSISY--------ARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL 53
KIL+ L + + + + A V+ T W + M + E++
Sbjct: 3 KKILSAILCMMIGATAMVGCGDKTDSTQAKDGGKVKLRMTNWNNEDTMKDMLKYLSEKLP 62
Query: 54 GYKTNIKLLAVPVT-----FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQ 108
+ + + + +G DI +L+ YLE + +
Sbjct: 63 NVEIEYQFIDNSNYNTIVDTQLSAEEGPDIICESPASALKHAKLGYLENVNDLAKKYSDS 122
Query: 109 GAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK 163
G N+V GI ++ I +K I + + +
Sbjct: 123 GTNVYKYDNNVYALPGISWFEGIYYNEKLFEENNIQIPKTFDEYIEVCKKFQSLG 177
>gi|146280475|ref|YP_001170628.1| C4 dicarboxylate binding protein [Pseudomonas stutzeri A1501]
gi|145568680|gb|ABP77786.1| probable C4 dicarboxylate binding protein [Pseudomonas stutzeri
A1501]
Length = 356
Score = 35.6 bits (80), Expect = 8.8, Method: Composition-based stats.
Identities = 30/329 (9%), Positives = 93/329 (28%), Gaps = 28/329 (8%)
Query: 1 MYKILA-VCLFLTTFSISYARDADSCTPVRFADT---GWTDIAATTAMTSVILEEILGYK 56
M+K+ A + SI+ A ++F+ M ++EE L K
Sbjct: 26 MFKLTAKALACALSLSIAGLAHAADPITIKFSHVVAENTPKGQ-GALMFKKLVEERLAGK 84
Query: 57 TNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQG------- 109
+++ F K + + + +G L
Sbjct: 85 VEVQVYPNSSLFGDGKEMEALLLGDVQLIAPSLAKFEHYSKGVQVFDLPFLFDDIAAVDR 144
Query: 110 AKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE--PGNEGNQRILDMINNNKFSLK 167
+ A + ++ K+ + + + + + + +
Sbjct: 145 FQQGEAGQSLLRSMEDKNITGLGYWHNGMKQLSANKPLREPKDARGLKFRVQASAVLDEQ 204
Query: 168 GFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVY 227
+ SF+++ + + + P+ +H + S G
Sbjct: 205 FKAVRANPRKMSFAEVYQGLQTGVVNGAE--NPYSNIYSQKMHEVQKYITESNHGLLDYM 262
Query: 228 TVVRSDY-----LDKCPNISRLLKNIKFS-VALENEMMKLILNNKQDRQFVGRTMLR--- 278
+ + + D + ++L + + +E+ + + ++ ++
Sbjct: 263 VITNTKFWNGLPADVRGELEKILDEVTVAVNKQADELNQA--DKQRIIDAGTTEIIDLTP 320
Query: 279 THPDLLKNWLIGV-TTFDGQDPSRQLERF 306
++ + + V F+G+ + ++
Sbjct: 321 EQREMWREAMKPVWKKFEGEIGADLIKAA 349
>gi|296100429|ref|YP_003610575.1| cytoplasmic membrane lipoprotein-28 [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295054888|gb|ADF59626.1| cytoplasmic membrane lipoprotein-28 [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 266
Score = 35.6 bits (80), Expect = 8.9, Method: Composition-based stats.
Identities = 24/238 (10%), Positives = 58/238 (24%), Gaps = 19/238 (7%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
+ ++ + + + +E G + + + N
Sbjct: 20 QSGSDAKHIKVGVINGAEQDV-AEVAKKVAKEKHGLDVELVGFSGSLLPNDATN---QGE 75
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
+ F+A + + KLVA G++ IKS D+
Sbjct: 76 LDANVFQHRPFLAEDNKAHNYKLVAVA-----NTFVFPMAGYSRKIKSVSDLKDGATIAI 130
Query: 140 AKIYGIEPGNEGNQRILDMINNNK--------FSLKGFRLIEASELASFSQIRRDQRNNI 191
+ +I + +Q+ R +
Sbjct: 131 PNDPTNLGRALLLLQKEKLITLKPDVGLLPTALDITANPKKLNIMELEGAQLPRVLDDPK 190
Query: 192 PAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
V + + + L+ + E V VV + N+ +++ +
Sbjct: 191 VDVAIISTTYIQQTGLSPVHDSVFIEDKNSP--YVNIVVTREDNKDAENVKEFIQSYQ 246
>gi|269795240|ref|YP_003314695.1| aliphatic sulfonates family ABC transporter substrate-binding
protein [Sanguibacter keddieii DSM 10542]
gi|269097425|gb|ACZ21861.1| ABC transporter, substrate-binding protein, aliphatic sulfonates
family [Sanguibacter keddieii DSM 10542]
Length = 365
Score = 35.6 bits (80), Expect = 9.1, Method: Composition-based stats.
Identities = 26/257 (10%), Positives = 64/257 (24%), Gaps = 38/257 (14%)
Query: 49 LEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQ 108
LE LG + + + ++ + + + + + I + Q
Sbjct: 87 LESTLGDDVEVTWVQSAGSNKANEALRAGV-VDVGSTAGSAALLAKSNGSPISSIYVYSQ 145
Query: 109 GAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKG 168
+ V S +A + A G +P +L ++ S+
Sbjct: 146 PEWAAIVVPADS------SITSVADLEGASVAATKGTDPYFF----LLQALDEAGLSVDD 195
Query: 169 FRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYT 228
+ + + + + I + + Y G
Sbjct: 196 VEVQNLQHADGKAALESGAVDGWAGLDPLMATSEIEAGSKLIYRNVDFNTYG------LL 249
Query: 229 VVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWL 288
++L + P++++++ D R + +PD L
Sbjct: 250 NATDEFLTENPDLAQVV---------------------VDAYEKARLWVEENPDEAVQIL 288
Query: 289 IGVTTFDGQDPSRQLER 305
D + L
Sbjct: 289 ADAAGIDSAIAEKVLTE 305
>gi|195940663|ref|ZP_03086045.1| cytoplasmic membrane lipoprotein-28 [Escherichia coli O157:H7 str.
EC4024]
Length = 266
Score = 35.6 bits (80), Expect = 9.1, Method: Composition-based stats.
Identities = 18/231 (7%), Positives = 58/231 (25%), Gaps = 5/231 (2%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVT-FRSLKNKGIDI 78
+ + ++ + + + +E G + + + + +D
Sbjct: 20 QSGNDARHIKVGVINGAEQDV-AEVAKKVAKEKYGLDVELVGFSGSLLPNDATNQGELDA 78
Query: 79 FMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKEL 138
+ P L + + + A Y + V +
Sbjct: 79 NVFQHRPFLAQDNKAHNYKLVAVANTFVFPMAGYSRKIKAVSELKDGATIAIPNDPTNLG 138
Query: 139 GAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSW 198
A + + + + ++ + +Q+ R + V +
Sbjct: 139 RALLLLQKEQLITLKPGVGLLPT-VLDITANPKNVQIMELEGAQLPRVLDDPKVDVAIIS 197
Query: 199 EPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
+ + L+ + E V VV + N+ +++ +
Sbjct: 198 TTYLQQTGLSPVHDSVFIEDKNSP--YVNIVVTREDNKDAENVKEFIQSYQ 246
>gi|170769004|ref|ZP_02903457.1| outer membrane protein X [Escherichia albertii TW07627]
gi|170122076|gb|EDS91007.1| outer membrane protein X [Escherichia albertii TW07627]
Length = 171
Score = 35.6 bits (80), Expect = 9.1, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 27/130 (20%), Gaps = 2/130 (1%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M KI + + + + + V M L Y+ +
Sbjct: 1 MKKIACLSALAAVLAFTAGTSVAATSTVTGGYAQSDAQGKMNKMGGFNL--KYRYEEDNS 58
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
L V +F + Y A + + G Y
Sbjct: 59 PLGVIGSFTYTEKSRTASTGDYNKTQYYGITAGPAYRINDWASIYGVVGVGYGKFQTTEF 118
Query: 121 FALGIKSYQD 130
A +
Sbjct: 119 PAYKHDTSDY 128
>gi|197285177|ref|YP_002151049.1| lipoprotein-28 [Proteus mirabilis HI4320]
gi|227355608|ref|ZP_03840002.1| ABC superfamily ATP binding cassette transporter, binding protein
[Proteus mirabilis ATCC 29906]
gi|194682664|emb|CAR42789.1| lipoprotein-28 [Proteus mirabilis HI4320]
gi|227164215|gb|EEI49108.1| ABC superfamily ATP binding cassette transporter, binding protein
[Proteus mirabilis ATCC 29906]
Length = 271
Score = 35.6 bits (80), Expect = 9.2, Method: Composition-based stats.
Identities = 20/230 (8%), Positives = 54/230 (23%), Gaps = 19/230 (8%)
Query: 28 VRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSL 87
++ + + + +E G + + + +
Sbjct: 33 IKVGVINGAEQDV-AEVAKKVAKEKYGLEVELVGFSGSLL-----PNDPTANKELDANVF 86
Query: 88 EKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEP 147
+ E + NL G++ IK Q++
Sbjct: 87 Q---HRPFLEQDNRSRGYNLVAVGNTFVFPMAGYSTKIKHPQELKPGDTIALPNDPTNLG 143
Query: 148 GNEGNQRILDMINNNK--------FSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWE 199
+ +I N + L +Q+ R + V +
Sbjct: 144 RALLLLQKEKLITLNPDSGLLPTTLDIIDNPLKLNIMQLEGAQLPRVLNDPQVTVAIIST 203
Query: 200 PHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
+ +L+ E ++ +V + + N+ +K +
Sbjct: 204 TYIQQINLSPTKDSIFIEDKSSPYTNI--IVTREDNKEAENVRDFIKAYQ 251
>gi|119773266|ref|YP_926006.1| putative sulfate transport system substrate-binding protein
[Shewanella amazonensis SB2B]
gi|119765766|gb|ABL98336.1| putative sulfate transport system substrate-binding protein
[Shewanella amazonensis SB2B]
Length = 270
Score = 35.6 bits (80), Expect = 9.2, Method: Composition-based stats.
Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 9/95 (9%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVIL---EEILGYKTN 58
IL L T SI+ + + ++ A T T+ + + +L E GYK
Sbjct: 5 KHILGAALTATLLSITPVQ---AEEVIKLATTTSTEN---SGLLKELLPTFEAQSGYKVQ 58
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP 93
+ + +D+ M + + KF+
Sbjct: 59 VIATGTGKALALGRQGDVDLVMTHAPAAEAKFVEE 93
>gi|221200818|ref|ZP_03573859.1| putative lysine-arginine-ornithine-binding periplasmic protein
[Burkholderia multivorans CGD2M]
gi|221207014|ref|ZP_03580025.1| putative lysine-arginine-ornithine-binding periplasmic protein
[Burkholderia multivorans CGD2]
gi|221210264|ref|ZP_03583244.1| putative lysine-arginine-ornithine-binding periplasmic protein
[Burkholderia multivorans CGD1]
gi|221169220|gb|EEE01687.1| putative lysine-arginine-ornithine-binding periplasmic protein
[Burkholderia multivorans CGD1]
gi|221173088|gb|EEE05524.1| putative lysine-arginine-ornithine-binding periplasmic protein
[Burkholderia multivorans CGD2]
gi|221179390|gb|EEE11796.1| putative lysine-arginine-ornithine-binding periplasmic protein
[Burkholderia multivorans CGD2M]
Length = 260
Score = 35.6 bits (80), Expect = 9.3, Method: Composition-based stats.
Identities = 11/51 (21%), Positives = 16/51 (31%), Gaps = 4/51 (7%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFA----DTGWTDIAATTAMTSV 47
M KILA + + A T VRF + A+ +
Sbjct: 1 MKKILAAVTVALLAVSAGSAYAKDWTTVRFGVDASYPPFESKDASGKVVGF 51
>gi|168206233|ref|ZP_02632238.1| sugar ABC transporter, sugar-binding protein [Clostridium
perfringens E str. JGS1987]
gi|170662238|gb|EDT14921.1| sugar ABC transporter, sugar-binding protein [Clostridium
perfringens E str. JGS1987]
Length = 419
Score = 35.6 bits (80), Expect = 9.3, Method: Composition-based stats.
Identities = 25/175 (14%), Positives = 51/175 (29%), Gaps = 13/175 (7%)
Query: 2 YKILAVCLFLTTFSISY--------ARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL 53
KIL+ L + + + + A V+ T W + M + E++
Sbjct: 3 KKILSAILCMMIGATAMVGCGDKADSTQAKDGGKVKLRMTNWNNEDTMKDMLKYLSEKLP 62
Query: 54 GYKTNIKLLAVPVT-----FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQ 108
+ + + + +G DI +L+ YLE + +
Sbjct: 63 NVEIEYQFIDNSNYNTIVDTQLSAEEGPDIICESPASALKHAKLGYLENVNDLAKKYSDS 122
Query: 109 GAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK 163
G N+V GI ++ I +K I + + +
Sbjct: 123 GTNVYKYDNNVYALPGISWFEGIYYNEKLFEENNIQIPKTFDEYIEVCKKFQSLG 177
>gi|118591707|ref|ZP_01549103.1| ABC transporter substrate-binding protein [Stappia aggregata IAM
12614]
gi|118435700|gb|EAV42345.1| ABC transporter substrate-binding protein [Stappia aggregata IAM
12614]
Length = 439
Score = 35.6 bits (80), Expect = 9.3, Method: Composition-based stats.
Identities = 19/195 (9%), Positives = 41/195 (21%), Gaps = 4/195 (2%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK 60
M + + + W A ++ E G+ +
Sbjct: 1 MKTAKLLAATALVAVSGLSVSNAQADELTLCWAAWDPANALVELSKE-FEAEYGHTMKFE 59
Query: 61 LLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVG 120
+ P + N ++ + + V N K ++++D
Sbjct: 60 FVPWPNFADRMLN-ELNSGGKLCDLLIGDSQWIGGGAENGHYVKLNDFFEKEGISMDDFA 118
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDM--INNNKFSLKGFRLIEASELA 178
A G G + + I G L A
Sbjct: 119 PATVYAYSTWPKGEPNYYALPAMGDANGWFYRKDWFEKPDIQAAFKEKHGRDLAPPKTQA 178
Query: 179 SFSQIRRDQRNNIPA 193
+I + +
Sbjct: 179 ELLEIAQFFQGREID 193
>gi|288959818|ref|YP_003450158.1| ABC transporter periplasmic substrate-binding protein [Azospirillum
sp. B510]
gi|288912126|dbj|BAI73614.1| ABC transporter periplasmic substrate-binding protein [Azospirillum
sp. B510]
Length = 362
Score = 35.6 bits (80), Expect = 9.4, Method: Composition-based stats.
Identities = 21/212 (9%), Positives = 48/212 (22%), Gaps = 17/212 (8%)
Query: 74 KGIDIFMGYWYPSLEKF----IAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQ 129
F + ++ NL+G + A +
Sbjct: 98 GNPTTITEATLSGNADFGAAGVPAFIIAWDKTKGNANLRGLAALNAQPAYL-NTNRPDVK 156
Query: 130 DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRN 189
+ + ++ + + + + + LA
Sbjct: 157 SLRDFTEKDRIVVPSVRASYQAIVLQIAAERTFGPGQHAKLDPQTVSLAHPDGTAALLSG 216
Query: 190 NIPAVFLSWEP---HPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLK 246
P D IH + ++ G + + + D P
Sbjct: 217 KTEITAHFTSPPFQDQQLRDPRIHKVLSSYDVLGGPASFSALWTSTAFHDTNP------- 269
Query: 247 NIKFSVALENEMMKLILNNKQDRQFVGRTMLR 278
K + A+ + + + K D Q R +R
Sbjct: 270 --KLTKAVLTALEEAVAQIKADPQEAARAYIR 299
>gi|312888013|ref|ZP_07747597.1| type I phosphodiesterase/nucleotide pyrophosphatase
[Mucilaginibacter paludis DSM 18603]
gi|311299494|gb|EFQ76579.1| type I phosphodiesterase/nucleotide pyrophosphatase
[Mucilaginibacter paludis DSM 18603]
Length = 411
Score = 35.6 bits (80), Expect = 9.5, Method: Composition-based stats.
Identities = 24/234 (10%), Positives = 54/234 (23%), Gaps = 18/234 (7%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEI--LGYKTN 58
M K L + + + A+ A AD + + +LE+ K
Sbjct: 1 MKKYLLMLAGILHLGLCVAQTAPKKVVFIIAD----------GIPADVLEKANTPNIKKM 50
Query: 59 IKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND 118
I A + P + + + +
Sbjct: 51 IAEGAYSRAHVGGDKGTYNQTPTISAPGYNDLLTGTWGNKHNVWDNDIKAPNYHYKNIFR 110
Query: 119 VGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELA 178
+ I + K+ G GN + + + F + S
Sbjct: 111 LLKEQQPDKKIAIFSTWLDNRTKLIGEGLQEAGNIKFDYKYDGYELDTMAFPHDKLSAYT 170
Query: 179 ------SFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASV 226
++ + N P + + + + + G+ + V
Sbjct: 171 HLIDNKVVAEAANCIKMNGPDLSWVYLEYTDDIGHRFGDSEQQMKAVGYVDEQV 224
>gi|299134536|ref|ZP_07027728.1| putative ABC transporter periplasmic substrate-binding protein
[Afipia sp. 1NLS2]
gi|298590346|gb|EFI50549.1| putative ABC transporter periplasmic substrate-binding protein
[Afipia sp. 1NLS2]
Length = 336
Score = 35.6 bits (80), Expect = 9.5, Method: Composition-based stats.
Identities = 35/284 (12%), Positives = 72/284 (25%), Gaps = 27/284 (9%)
Query: 2 YKILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSV-ILEEIL------G 54
+I CL LT + S A + +R A M ++E+
Sbjct: 4 RRIALACLSLTAVAFSLQPAAAEVSEIRLARQPGLSYLPLAVMEREKLIEKHAAAAGLKD 63
Query: 55 YKTNIKLLAVPVTFRS-LKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYM 113
K A L + +DI G P + + + ++ Q +
Sbjct: 64 IKVEWSKFAAGNVMNDALLSGSLDIASGGVAP-----LITLWAKSNGQVRGVAAQTTSQI 118
Query: 114 LAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIE 173
IK + D + ++ N K +
Sbjct: 119 YINTRNPDVKTIKDFTDKDRIALPAVKVSVNAIVLQMAAEKAFGPGNAYKLE--PLTVSR 176
Query: 174 ASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSD 233
+ S + + N A + + + IH + ++ G +
Sbjct: 177 SYAEGSAALLSGAGEINSAASAPPYY-YKEIATPGIHTVLKSYDVLGGPSTNNLLWTTKK 235
Query: 234 YLDKCPNIS-RLLKNIKFSVALENEMMKLILNNKQDRQFVGRTM 276
+ D+ P + K N + +D + +
Sbjct: 236 FHDENPKLYAAFFAAYK---DAINLIN-------KDPKKGAQIF 269
>gi|168212289|ref|ZP_02637914.1| sugar ABC transporter, sugar-binding protein [Clostridium
perfringens CPE str. F4969]
gi|170716023|gb|EDT28205.1| sugar ABC transporter, sugar-binding protein [Clostridium
perfringens CPE str. F4969]
Length = 419
Score = 35.6 bits (80), Expect = 9.5, Method: Composition-based stats.
Identities = 25/175 (14%), Positives = 51/175 (29%), Gaps = 13/175 (7%)
Query: 2 YKILAVCLFLTTFSISY--------ARDADSCTPVRFADTGWTDIAATTAMTSVILEEIL 53
KIL+ L + + + + A V+ T W + M + E++
Sbjct: 3 KKILSAILCMMIGATAMVGCGDKADSTQAKDGGKVKLRMTNWNNEDTMKDMLKYLSEKLP 62
Query: 54 GYKTNIKLLAVPVT-----FRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQ 108
+ + + + +G DI +L+ YLE + +
Sbjct: 63 NVEIEYQFIDNSNYNTIVDTQLSAEEGPDIICESPASALKHAKLGYLENVNDLAKKYSDS 122
Query: 109 GAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNK 163
G N+V GI ++ I +K I + + +
Sbjct: 123 GTNVYKYDNNVYALPGISWFEGIYYNEKLFEENNIQIPKTFDEYIEVCKKFQSLG 177
>gi|114708014|ref|ZP_01440905.1| hypothetical protein FP2506_01863 [Fulvimarina pelagi HTCC2506]
gi|114536555|gb|EAU39688.1| hypothetical protein FP2506_01863 [Fulvimarina pelagi HTCC2506]
Length = 505
Score = 35.6 bits (80), Expect = 9.6, Method: Composition-based stats.
Identities = 18/213 (8%), Positives = 43/213 (20%), Gaps = 12/213 (5%)
Query: 20 RDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIF 79
+ T +RFA A EE G I++L + + + +
Sbjct: 82 AKPYAGTTLRFATESTPPSNALNNGLVRYFEEATGINVEIEVLPLEQVLQK-----LTLD 136
Query: 80 MGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELG 139
+ + + S + + A +
Sbjct: 137 AASQLGTYDLYYIDQSWAASFSRDVFDPREQYEGNADLAYPDYNIDDFLPALVDGIAVFE 196
Query: 140 AKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWE 199
+ G+ ++ LK +E S + P + +
Sbjct: 197 DRWVGVPYDIPIFIMQYRKDIYDELGLKAPETMEEMLSNSQAITEA----KGPDI---YG 249
Query: 200 PHPINSDLNIHYLPGGEEISGFGEASVYTVVRS 232
+ ++
Sbjct: 250 TTGQMKSGHYSLECDWTCWLWGHGGQIFDSSNK 282
>gi|161519896|ref|YP_001583323.1| cationic amino acid ABC transporter, periplasmic binding protein
[Burkholderia multivorans ATCC 17616]
gi|189353926|ref|YP_001949553.1| polar amino acid transport system substrate-binding protein
[Burkholderia multivorans ATCC 17616]
gi|160343946|gb|ABX17031.1| cationic amino acid ABC transporter, periplasmic binding protein
[Burkholderia multivorans ATCC 17616]
gi|189337948|dbj|BAG47017.1| polar amino acid transport system substrate-binding protein
[Burkholderia multivorans ATCC 17616]
Length = 260
Score = 35.6 bits (80), Expect = 9.9, Method: Composition-based stats.
Identities = 11/51 (21%), Positives = 16/51 (31%), Gaps = 4/51 (7%)
Query: 1 MYKILAVCLFLTTFSISYARDADSCTPVRFA----DTGWTDIAATTAMTSV 47
M KILA + + A T VRF + A+ +
Sbjct: 1 MKKILAAVTVALLAVSAGSAYAKDWTTVRFGVDASYPPFESKDASGKVVGF 51
>gi|210620981|ref|ZP_03292366.1| hypothetical protein CLOHIR_00309 [Clostridium hiranonis DSM
13275]
gi|210154965|gb|EEA85971.1| hypothetical protein CLOHIR_00309 [Clostridium hiranonis DSM
13275]
Length = 267
Score = 35.6 bits (80), Expect = 9.9, Method: Composition-based stats.
Identities = 9/66 (13%), Positives = 24/66 (36%), Gaps = 4/66 (6%)
Query: 1 MYKILAVCL---FLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
+ K+L+V + + ++ A+ + T +LE+ GY+
Sbjct: 3 LKKLLSVAIASVIALSVVGCGSKSAEDDKKIVVGATANPHAVILNEAVKPLLEKE-GYEL 61
Query: 58 NIKLLA 63
++ +
Sbjct: 62 EVQEFS 67
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.307 0.120 0.293
Lambda K H
0.267 0.0371 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,576,823,641
Number of Sequences: 14124377
Number of extensions: 52720603
Number of successful extensions: 233834
Number of sequences better than 10.0: 4527
Number of HSP's better than 10.0 without gapping: 2732
Number of HSP's successfully gapped in prelim test: 1795
Number of HSP's that attempted gapping in prelim test: 223789
Number of HSP's gapped (non-prelim): 4908
length of query: 309
length of database: 4,842,793,630
effective HSP length: 138
effective length of query: 171
effective length of database: 2,893,629,604
effective search space: 494810662284
effective search space used: 494810662284
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 80 (35.6 bits)