RPSBLAST alignment of GI: 254780342 and protein with PDBid: 1r9l

>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A* Length = 309

 Score =  146 bits (368), Expect = 7e-36
 Identities = 41/298 (13%), Positives = 86/298 (28%), Gaps = 35/298 (11%)

Query: 24  SCTPVRFADTGWTDIAATTAMTSVILEEILGYK-TNIKLLAVPVTFRSLKNKGIDIFMGY 82
               V    +  T+    T + S  LE+ LGY       +   V + SL +         
Sbjct: 6   KGITVNPVQSTITEETFQTLLVSRALEK-LGYTVNKPSEVDYNVGYTSLASGDATFTAVN 64

Query: 83  WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND---------VGFALGIKSYQDIAK 133
           W P  +        +         + GA     ++              L       +  
Sbjct: 65  WTPLHDNMYEAAGGDKKFYREGVFVNGAAQGYLIDKKTADQYKITNIAQLKDPKIAKLFD 124

Query: 134 YKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPA 193
              +  A + G  PG      I   +             + +  A  +      +   P 
Sbjct: 125 TNGDGKADLTGCNPGWGCEGAINHQLAAY-ELTNTVTHNQGNYAAMMADTISRYKEGKPV 183

Query: 194 VFLSWEPHPINSDLNIHYLPGGEEI--------------------SGFGEASVYTVVRSD 233
            + +W P+ ++++L         ++                     GF  ++++ V    
Sbjct: 184 FYYTWTPYWVSNELKPGKDVVWLQVPFSALPGDKNADTKLPNGANYGFPVSTMHIVANKA 243

Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNK---QDRQFVGRTMLRTHPDLLKNWL 288
           + +K P  ++L   ++  VA  N    ++ + K    D Q      ++ H      W+
Sbjct: 244 WAEKNPAAAKLFAIMQLPVADINAQNAIMHDGKASEGDIQGHVDGWIKAHQQQFDGWV 301