RPSBLAST alignment of GI: 254780342 and protein with PDBid: 3l6g

>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A Length = 256
 Score =  160 bits (406), Expect = 3e-40
 Identities = 50/264 (18%), Positives = 102/264 (38%), Gaps = 11/264 (4%)

Query: 27  PVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPS 86
            V      W    A+  + +  ++E  G+      L   V ++++ N   D  +  W P+
Sbjct: 3   KVDLVYMNWDSEVASINVLTQAMKE-HGFDVKTTALDNAVAWQTVANGQADGMVSAWLPN 61

Query: 87  LEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE 146
             K       +  + L+  NL+GAK    V      + + S +D+     +    I GIE
Sbjct: 62  THKTQWQKYGKS-VDLLGPNLKGAKVGFVVPS---YMNVNSIEDLTNQANKT---ITGIE 114

Query: 147 PGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSD 206
           PG          +N+   +LK ++L+ +S  A    +    + +   V   W PH + + 
Sbjct: 115 PGAGVMAASEKTLNSY-DNLKDWKLVPSSSGAMTVALGEAIKQHKDIVITGWSPHWMFNK 173

Query: 207 LNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNK 266
            ++ YL    + +     ++ T+VR     + P   ++L    ++      +M  I  N 
Sbjct: 174 YDLKYLADP-KGTMGTSENINTIVRKGLKKENPEAYKVLDKFNWTTKDMEAVMLDI-QNG 231

Query: 267 QDRQFVGRTMLRTHPDLLKNWLIG 290
           +  +   +  ++ H   +  W  G
Sbjct: 232 KTPEEAAKNWIKDHQKEVDKWFKG 255