RPSBLAST alignment of GI: 254780342 and protein with PDBid: 3l6g
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A Length = 256
Score = 160 bits (406), Expect = 3e-40
Identities = 50/264 (18%), Positives = 102/264 (38%), Gaps = 11/264 (4%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPS 86
V W A+ + + ++E G+ L V ++++ N D + W P+
Sbjct: 3 KVDLVYMNWDSEVASINVLTQAMKE-HGFDVKTTALDNAVAWQTVANGQADGMVSAWLPN 61
Query: 87 LEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE 146
K + + L+ NL+GAK V + + S +D+ + I GIE
Sbjct: 62 THKTQWQKYGKS-VDLLGPNLKGAKVGFVVPS---YMNVNSIEDLTNQANKT---ITGIE 114
Query: 147 PGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSD 206
PG +N+ +LK ++L+ +S A + + + V W PH + +
Sbjct: 115 PGAGVMAASEKTLNSY-DNLKDWKLVPSSSGAMTVALGEAIKQHKDIVITGWSPHWMFNK 173
Query: 207 LNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNK 266
++ YL + + ++ T+VR + P ++L ++ +M I N
Sbjct: 174 YDLKYLADP-KGTMGTSENINTIVRKGLKKENPEAYKVLDKFNWTTKDMEAVMLDI-QNG 231
Query: 267 QDRQFVGRTMLRTHPDLLKNWLIG 290
+ + + ++ H + W G
Sbjct: 232 KTPEEAAKNWIKDHQKEVDKWFKG 255