RPSBLAST alignment of GI: 254780342 and protein with PDBid: 3o66

>3o66_A Glycine betaine/carnitine/choline ABC transporter; structural genomics, PSI-2, protein structure initiative; HET: PGE; 1.86A {Staphylococcus aureus subsp} Length = 282

 Score = 86.2 bits (212), Expect = 8e-18
 Identities = 26/280 (9%), Positives = 69/280 (24%), Gaps = 27/280 (9%)

Query: 22  ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL----AVPVTFRSLKNKGID 77
             +   V+      ++    + M  +++E     K    L+    +  +   +L N   +
Sbjct: 5   KSTKNDVKITALSTSESQIISHMLRLLIEHDTHGKIKPTLVNNLGSSTIQHNALINGDAN 64

Query: 78  IFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGA----------KYMLAVNDVGFAL---- 123
           I    +  +              K      Q                  N   F +    
Sbjct: 65  ISGVRYNGTDLTGALKEAPIKDPKKAMIATQQGFKKKFDQTFFDSYGFANTYAFMVTKET 124

Query: 124 -GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
                 + ++   K       G++      +         ++                  
Sbjct: 125 AKKYHLETVSDLAKHSKDLRLGMDSSWMNRKGDGYEGFKKEYGFD----FGTVRPMQIGL 180

Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
           +          V L +      +  ++  L   ++   F   +   V  ++ L + P + 
Sbjct: 181 VYDALNTEKLDVALGYSTDGRIAAYDLKVLKDDKQF--FPPYAASAVATNELLRQHPELK 238

Query: 243 RLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
             +  +  K S +    +        ++   V    L+ H
Sbjct: 239 TTINKLTGKISTSEMQRLNYEADGKGKEPAVVAEEFLKKH 278