RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780342|ref|YP_003064755.1| substrate-binding region of
ABC-type glycine betaine transport system [Candidatus Liberibacter
asiaticus str. psy62]
(309 letters)
>2rin_A Putative glycine betaine-binding ABC transporter protein; type II
binding protein, aromatic BOX, acetylcholine, protein
binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB:
2rej_A 2rf1_A 2reg_A* 3hcq_A
Length = 298
Score = 216 bits (550), Expect = 6e-57
Identities = 139/280 (49%), Positives = 196/280 (70%), Gaps = 3/280 (1%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFM 80
+ +SC VRF+D GWTDI ATTA + ILE LGY+T++K+L+VPVT+ SLKNK ID+F+
Sbjct: 2 EPESCGTVRFSDVGWTDITATTATATTILEA-LGYETDVKVLSVPVTYTSLKNKDIDVFL 60
Query: 81 GYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGA 140
G W P++E IAPY E+ S++ V ENL GAKY LA N G LGIK ++DIA +K EL
Sbjct: 61 GNWMPTMEADIAPYREDKSVETVRENLAGAKYTLATNAKGAELGIKDFKDIAAHKDELDG 120
Query: 141 KIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEP 200
KIYGIEPGN+GN+ I+DM+ F LKGF ++E+SE +Q+ R +++ P VFL WEP
Sbjct: 121 KIYGIEPGNDGNRLIIDMVEKGTFDLKGFEVVESSEQGMLAQVARAEKSGDPIVFLGWEP 180
Query: 201 HPINSDLNIHYLPGGEE--ISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEM 258
HP+N++ + YL GG++ +G A+V+T VR+ Y +CPN+ +LL+N+ FS+ +ENE+
Sbjct: 181 HPMNANFKLTYLSGGDDVFGPNYGGATVHTNVRAGYTTECPNVDKLLQNLSFSLQMENEI 240
Query: 259 MKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQD 298
M ILN+ +D + L+ +P ++ WL GV T DG D
Sbjct: 241 MGKILNDGEDPEKAAAAWLKDNPQSIEPWLSGVATKDGGD 280
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine
betaine binding, substrate binding domain, venus FLY
cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB:
3l6h_A
Length = 256
Score = 160 bits (406), Expect = 3e-40
Identities = 50/264 (18%), Positives = 102/264 (38%), Gaps = 11/264 (4%)
Query: 27 PVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPS 86
V W A+ + + ++E G+ L V ++++ N D + W P+
Sbjct: 3 KVDLVYMNWDSEVASINVLTQAMKE-HGFDVKTTALDNAVAWQTVANGQADGMVSAWLPN 61
Query: 87 LEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGIE 146
K + + L+ NL+GAK V + + S +D+ + I GIE
Sbjct: 62 THKTQWQKYGKS-VDLLGPNLKGAKVGFVVPS---YMNVNSIEDLTNQANKT---ITGIE 114
Query: 147 PGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPAVFLSWEPHPINSD 206
PG +N+ +LK ++L+ +S A + + + V W PH + +
Sbjct: 115 PGAGVMAASEKTLNSY-DNLKDWKLVPSSSGAMTVALGEAIKQHKDIVITGWSPHWMFNK 173
Query: 207 LNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNK 266
++ YL + + ++ T+VR + P ++L ++ +M I N
Sbjct: 174 YDLKYLADP-KGTMGTSENINTIVRKGLKKENPEAYKVLDKFNWTTKDMEAVMLDI-QNG 231
Query: 267 QDRQFVGRTMLRTHPDLLKNWLIG 290
+ + + ++ H + W G
Sbjct: 232 KTPEEAAKNWIKDHQKEVDKWFKG 255
>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding
protein, cation-PI interactions, tryptophan BOX, protein
binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB:
1r9q_A*
Length = 309
Score = 146 bits (368), Expect = 7e-36
Identities = 41/298 (13%), Positives = 86/298 (28%), Gaps = 35/298 (11%)
Query: 24 SCTPVRFADTGWTDIAATTAMTSVILEEILGYK-TNIKLLAVPVTFRSLKNKGIDIFMGY 82
V + T+ T + S LE+ LGY + V + SL +
Sbjct: 6 KGITVNPVQSTITEETFQTLLVSRALEK-LGYTVNKPSEVDYNVGYTSLASGDATFTAVN 64
Query: 83 WYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVND---------VGFALGIKSYQDIAK 133
W P + + + GA ++ L +
Sbjct: 65 WTPLHDNMYEAAGGDKKFYREGVFVNGAAQGYLIDKKTADQYKITNIAQLKDPKIAKLFD 124
Query: 134 YKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRNNIPA 193
+ A + G PG I + + + A + + P
Sbjct: 125 TNGDGKADLTGCNPGWGCEGAINHQLAAY-ELTNTVTHNQGNYAAMMADTISRYKEGKPV 183
Query: 194 VFLSWEPHPINSDLNIHYLPGGEEI--------------------SGFGEASVYTVVRSD 233
+ +W P+ ++++L ++ GF ++++ V
Sbjct: 184 FYYTWTPYWVSNELKPGKDVVWLQVPFSALPGDKNADTKLPNGANYGFPVSTMHIVANKA 243
Query: 234 YLDKCPNISRLLKNIKFSVALENEMMKLILNNK---QDRQFVGRTMLRTHPDLLKNWL 288
+ +K P ++L ++ VA N ++ + K D Q ++ H W+
Sbjct: 244 WAEKNPAAAKLFAIMQLPVADINAQNAIMHDGKASEGDIQGHVDGWIKAHQQQFDGWV 301
>2b4l_A Glycine betaine-binding protein; substrate-binding protein, closed
liganded, ABC-transporter, compatible solutes, transport
protein; 2.00A {Bacillus subtilis} PDB: 2b4m_A* 3chg_D
Length = 268
Score = 134 bits (339), Expect = 2e-32
Identities = 36/172 (20%), Positives = 70/172 (40%), Gaps = 4/172 (2%)
Query: 130 DIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQIRRDQRN 189
+ A +++ I GI+PG+ + + + L + LI AS A + +++
Sbjct: 2 ENASAAEQVNKTIIGIDPGSGIMSLTDKAMKD--YDLNDWTLISASSAAMTATLKKSYDR 59
Query: 190 NIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
P + W PH + S + YL ++ S ++T+ R + + PN ++LL K
Sbjct: 60 KKPIIITGWTPHWMFSRYKLKYLDDPKQ-SYGSAEEIHTITRKGFSKEQPNAAKLLSQFK 118
Query: 250 FSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLKNWLIGVTTFDGQDPSR 301
++ E+M + + V + H D + W GV G +
Sbjct: 119 WTQDEMGEIMIKV-EEGEKPAKVAAEYVNKHKDQIAEWTKGVQKVKGDKINL 169
Score = 82.7 bits (204), Expect = 1e-16
Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 4/113 (3%)
Query: 21 DADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFM 80
+ A W A+T + +LE+ LGY+ + + + ++ D +
Sbjct: 160 QKVKGDKINLAYVAWDSEIASTNVIGKVLED-LGYEVTLTQVEAGPMWTAIATGSADASL 218
Query: 81 GYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKSYQDIAK 133
W P+ K A +G + ++ G K L V + + S +D+ K
Sbjct: 219 SAWLPNTHKAYAAKY-KGKYDDIGTSMTGVKMGLVVPQ--YMKNVNSIEDLKK 268
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes,
cation-PI interactions, non-classical hydrogen bonds;
1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: c.94.1.1
PDB: 1sw4_A 1sw1_A 1sw2_A
Length = 275
Score = 93.0 bits (230), Expect = 7e-20
Identities = 46/288 (15%), Positives = 93/288 (32%), Gaps = 38/288 (13%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIK--LLAVPVTFRSLKNKGIDIF 79
+ S V + + M +++LEE GYK +K L V + +LK I ++
Sbjct: 2 SQSSERVVIGSKPFNEQYILANMIAILLEE-NGYKAEVKEGLGGTLVNYEALKRNDIQLY 60
Query: 80 MGYWYPSLEKF------------------IAPYLEEGSIKLVAENLQGAKYMLAVN-DVG 120
+ Y + LE + + A+ Y LAV D
Sbjct: 61 VEYTGTAYNVILRKQPPELWDQQYIFDEVKKGLLEADGVVVAAKLGFRDDYALAVRADWA 120
Query: 121 FALGIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILD-MINNNKFSLKGFRLIEASELAS 179
G++ D+A++ + ++G +P L + F K + +E + +
Sbjct: 121 EENGVEKISDLAEFADQ---LVFGSDPEFASRPDGLPQIKKVYGFEFKEVKQMEPTLMYE 177
Query: 180 FSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCP 239
+N V ++ N+ L +V + K
Sbjct: 178 A------IKNKQVDVIPAYTTDSRVDLFNLKILEDD--KGALPPYDAIIIVNGNTA-KDE 228
Query: 240 NISRLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTHPDLLK 285
+ +LK + + + K+D + + + L+ L+K
Sbjct: 229 KLISVLKLLEDRIDTDTMRALNYQYDVEKKDAREIAMSFLKEQG-LVK 275
>3o66_A Glycine betaine/carnitine/choline ABC transporter; structural
genomics, PSI-2, protein structure initiative; HET: PGE;
1.86A {Staphylococcus aureus subsp}
Length = 282
Score = 86.2 bits (212), Expect = 8e-18
Identities = 26/280 (9%), Positives = 69/280 (24%), Gaps = 27/280 (9%)
Query: 22 ADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKTNIKLL----AVPVTFRSLKNKGID 77
+ V+ ++ + M +++E K L+ + + +L N +
Sbjct: 5 KSTKNDVKITALSTSESQIISHMLRLLIEHDTHGKIKPTLVNNLGSSTIQHNALINGDAN 64
Query: 78 IFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGA----------KYMLAVNDVGFAL---- 123
I + + K Q N F +
Sbjct: 65 ISGVRYNGTDLTGALKEAPIKDPKKAMIATQQGFKKKFDQTFFDSYGFANTYAFMVTKET 124
Query: 124 -GIKSYQDIAKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ 182
+ ++ K G++ + ++
Sbjct: 125 AKKYHLETVSDLAKHSKDLRLGMDSSWMNRKGDGYEGFKKEYGFD----FGTVRPMQIGL 180
Query: 183 IRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNIS 242
+ V L + + ++ L ++ F + V ++ L + P +
Sbjct: 181 VYDALNTEKLDVALGYSTDGRIAAYDLKVLKDDKQF--FPPYAASAVATNELLRQHPELK 238
Query: 243 RLLKNI--KFSVALENEMMKLILNNKQDRQFVGRTMLRTH 280
+ + K S + + ++ V L+ H
Sbjct: 239 TTINKLTGKISTSEMQRLNYEADGKGKEPAVVAEEFLKKH 278
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 58.8 bits (142), Expect = 1e-09
Identities = 59/333 (17%), Positives = 98/333 (29%), Gaps = 139/333 (41%)
Query: 10 FLTTFSISY--------ARDADSC-----TPVRFAD-----TGWTD---IAATTAM-TSV 47
+L + IS A + TP TG + A A S
Sbjct: 230 YLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS- 288
Query: 48 ILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGY----WYPSLEKFIAPYLEEGSIKLV 103
E + +++ A+ V F F+G YP+ + P + E S+
Sbjct: 289 -WES---FFVSVRK-AITVLF----------FIGVRCYEAYPNT--SLPPSILEDSL--- 328
Query: 104 AENLQGA-KYMLAVNDVGFALGIKSYQD-IAKYKKELGAKIYGIEPGNEGNQRI-LDMIN 160
EN +G ML++++ L + QD + K L P +++ + ++N
Sbjct: 329 -ENNEGVPSPMLSISN----LTQEQVQDYVNKTNSHL--------PAG---KQVEISLVN 372
Query: 161 N--NKF-------SLKGF----RLIEASELASFSQIRRDQRN-NIPAVFLSWEPHPINSD 206
N SL G R +A S+I +R FL P+ S
Sbjct: 373 GAKN-LVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL-----PVASP 426
Query: 207 LNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIKFSVALENEMMKLILNNK 266
+ H L ++ D + N+ F+
Sbjct: 427 FHSHLL-----------VPASDLINKDLVKN---------NVSFN--------------- 451
Query: 267 QDRQFVGRTMLRTHPDLLKNWLIGV-TTFDGQD 298
++ I V TFDG D
Sbjct: 452 --------------AKDIQ---IPVYDTFDGSD 467
Score = 42.6 bits (100), Expect = 1e-04
Identities = 53/297 (17%), Positives = 93/297 (31%), Gaps = 116/297 (39%)
Query: 48 ILEEILGYKTNI--KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAE 105
++ +++ + +L+ + + +G++I + W LE
Sbjct: 183 LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI-LE-W---LEN--------------PS 223
Query: 106 NLQGAKYMLAVNDVGFAL-GIKSYQDIAKYKKELGAKIYGIEPGN-----EG----NQRI 155
N Y+L++ + L G+ +A Y + AK+ G PG +G +Q +
Sbjct: 224 NTPDKDYLLSI-PISCPLIGVIQ---LAHYV--VTAKLLGFTPGELRSYLKGATGHSQGL 277
Query: 156 L--------DMINNNKFSLKGFRLIEASELA---SF-----SQIRRDQ---RNNIPAVFL 196
+ D S + F + A F + ++P L
Sbjct: 278 VTAVAIAETD-------SWESF--FVSVRKAITVLFFIGVRCY----EAYPNTSLPPSIL 324
Query: 197 --SWE-----PHPINSDLNIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLKNIK 249
S E P P+ L+I L V+ DY++K N S L +
Sbjct: 325 EDSLENNEGVPSPM---LSISNLT-------------QEQVQ-DYVNKT-N-SHLPAGKQ 365
Query: 250 FSVALENEMMKLILNNKQDRQFV--GRTMLRTHP-DL--LKNWLIGVTTFDGQDPSR 301
++L N + V G P L L L G D SR
Sbjct: 366 VEISLVN----------GAKNLVVSG------PPQSLYGLNLTLRKAKAPSGLDQSR 406
Score = 39.9 bits (93), Expect = 7e-04
Identities = 45/294 (15%), Positives = 79/294 (26%), Gaps = 120/294 (40%)
Query: 86 SLEKFIAPYLEEGSIK---LVAENLQGAKYMLA--VNDVGFALGIKSY------QDIAKY 134
S L GS++ LV + +A + + F + D
Sbjct: 5 STRPLT---LSHGSLEHVLLVPTAS----FFIASQLQEQ-FNKILPEPTEGFAADDEPTT 56
Query: 135 KKELGAKIYG-----IEPGNEG-NQRILDMINNNKFSLKGFR---L----IE--ASELAS 179
EL K G +EP G ++L L F L I A++L
Sbjct: 57 PAELVGKFLGYVSSLVEPSKVGQFDQVL------NLCLTEFENCYLEGNDIHALAAKLLQ 110
Query: 180 FSQIRRDQRNNI-----PAVFLSWEPHPINSDLNIHYLPGGEEISGF------GEASVYT 228
+ + + A ++ P S+ S G A +
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKRPFDKKSN------------SALFRAVGEGNAQLVA 158
Query: 229 V-----VRSDYLDKC--------PNISRLLKNIKFSVALENEMMKLILNNKQDRQFVGRT 275
+ DY ++ + L+K A E + ++ D +
Sbjct: 159 IFGGQGNTDDYFEELRDLYQTYHVLVGDLIK----FSA---ETLSELIRTTLDAEK---- 207
Query: 276 MLRTHP-DLLKNWL---------------------IGVTTFDGQDPSRQLERFM 307
+ T ++L+ WL IGV QL ++
Sbjct: 208 -VFTQGLNILE-WLENPSNTPDKDYLLSIPISCPLIGVI---------QLAHYV 250
Score = 38.4 bits (89), Expect = 0.002
Identities = 36/217 (16%), Positives = 60/217 (27%), Gaps = 96/217 (44%)
Query: 42 TAMTSVI------LEEILGYKTN----------IKLLAVPVTF------RSL-------- 71
+ M S+ +++ + KTN I L+ +SL
Sbjct: 336 SPMLSISNLTQEQVQDYVN-KTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLR 394
Query: 72 KNK---GID---IFMGYWYPSLEK--------------FIAPYLEEGSIKLVAENLQGAK 111
K K G+D I P E+ F + L + L+ ++L
Sbjct: 395 KAKAPSGLDQSRI------PFSERKLKFSNRFLPVASPFHSHLLV-PASDLINKDLVKNN 447
Query: 112 YMLAVNDVGFALGIKSY-----QDIAKYKKELGAKI------------------------ 142
D + I Y D+ + +I
Sbjct: 448 VSFNAKD----IQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILD 503
Query: 143 YGIEPGNEGNQRILDMINNNKFSLKGFRLIEASELAS 179
+G PG G + + + NK G R+I A L
Sbjct: 504 FG--PG--GASGLGVLTHRNK-DGTGVRVIVAGTLDI 535
Score = 32.2 bits (73), Expect = 0.17
Identities = 52/245 (21%), Positives = 86/245 (35%), Gaps = 92/245 (37%)
Query: 45 TSVILEEILGYKTNIKLLAVPVTFRSLKNKGIDIFMGYWYPSL---EKFIAPYLEEGSIK 101
T I +EI + T+ TFRS KG+ + P+L EK A + + S
Sbjct: 1703 TEKIFKEINEHSTS-------YTFRS--EKGLLSATQFTQPALTLMEK--AAFEDLKSKG 1751
Query: 102 LVAENLQGAKYML----AVNDVGFALGIKSYQDIAKYK----------KELGAKIYG--- 144
L+ + A + L A+ + + I+S ++ Y+ ELG YG
Sbjct: 1752 LIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIA 1811
Query: 145 IEPGNEGNQRILDMINNNKFSLKGFRLIEASELASFSQ------IRRDQRNNIPAVFLSW 198
I PG R+ ASFSQ + R + W
Sbjct: 1812 INPG-----RV---------------------AASFSQEALQYVVERVGKRT------GW 1839
Query: 199 EPHPINSDL-NIHYLPGGEEISGFGEASVYTVVRSDYLDKCPNISRLLK-------NIKF 250
+N ++ N Y+ G+ +R+ LD N+ +K ++
Sbjct: 1840 LVEIVNYNVENQQYVAAGD-------------LRA--LDTVTNVLNFIKLQKIDIIELQK 1884
Query: 251 SVALE 255
S++LE
Sbjct: 1885 SLSLE 1889
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.056
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 18/42 (42%)
Query: 86 SLEKFIAPYLEEGSIKLVAENLQGAKYMLAVNDVGFALGIKS 127
+L+K + S+KL A+ D AL IK+
Sbjct: 21 ALKKL------QASLKLYAD------------DSAPALAIKA 44
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.70A {Bacillus halodurans}
Length = 561
Score = 31.6 bits (70), Expect = 0.22
Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 7/92 (7%)
Query: 94 YLEEGSIKLVAENLQGAKYMLA-----VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPG 148
YL++ IKLVAE + + L I K+ LG K+Y
Sbjct: 70 YLKQFEIKLVAEVGKERAIVYENAPHVTTPEWMLLPIFKDGTFGKFSTSLGLKVYDYLAD 129
Query: 149 NEGNQRILDMINNNKFSLKGFRLIEASELASF 180
++R + N K +L+ L+ L
Sbjct: 130 VRKDER--RYMLNEKQTLEKEPLLRKENLKGG 159
>3hun_A Penicillin-binding protein 4; ampicillin, beta-lactamase, serine
type D-Ala, D-Ala-carboxypeptidase, hydrolase; HET: ZZ7;
2.00A {Staphylococcus aureus} PDB: 3hum_A*
Length = 453
Score = 31.4 bits (70), Expect = 0.28
Identities = 30/164 (18%), Positives = 62/164 (37%), Gaps = 24/164 (14%)
Query: 4 ILAVCLFLTTFSISYARDADSCTPVRFAD-TGWTDIAATTAMTSVILE----EILGYKTN 58
I+ +CL L+ + TPV+ A+ G+ ++A TS + ++L Y+ N
Sbjct: 30 IIILCLTLSIMTPYAQATNSDVTPVQAANQYGYAGLSAAYEPTSAVNVSQTGQLL-YQYN 88
Query: 59 I----------KLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAP-------YLEEGSIK 101
I KL+ + +T ++ + + + E ++ L G +
Sbjct: 89 IDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELSNTKLYPGQVW 148
Query: 102 LVAENLQGAKYMLAVNDVGFALGIKSYQDIAKYKKELGAKIYGI 145
+A+ LQ + N L K ++ + + + K I
Sbjct: 149 TIADLLQIT-VSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAI 191
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate
dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A
{Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Length = 501
Score = 29.6 bits (65), Expect = 0.86
Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 6/66 (9%)
Query: 94 YLEEGSIKLVAENLQGAKYMLA-----VNDVGFALGIKSYQDIAKYKKELGAKIYGIEPG 148
YLE +LV+E L + +L + F L + + A + +G +Y
Sbjct: 55 YLEHYEFRLVSEALAEREVLLKMAPHIAFPMRFRLPHRPHLRPA-WMIRIGLFMYDHLGK 113
Query: 149 NEGNQR 154
Sbjct: 114 RTSLPG 119
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase,
thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP:
a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2
PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A*
1jdb_B* 1kee_A* 1t36_A*
Length = 1073
Score = 28.4 bits (63), Expect = 2.0
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 132 AKYKKELGAKIYGIEPGNEGNQRILDMINNNKFSL 166
A E G + +EG I D I N +++
Sbjct: 978 AIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTY 1012
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 27.5 bits (60), Expect = 4.4
Identities = 57/274 (20%), Positives = 95/274 (34%), Gaps = 73/274 (26%)
Query: 1 MY---KILAVCLFLTTFSISYARDADSCTPVRFADTGWTDIAATTAMTSVILEEILGYKT 57
MY K+ LF S S+A C + GWT + ++I E I K
Sbjct: 639 MYSESKLSLETLFNRWHSESWANQLTVCGAI----IGWTRGTGLMSANNIIAEGI--EKM 692
Query: 58 NIKLLAVPVTFRSLKNKGIDIFMGYWYPSLEKFIAPYLEEGSIKLVAENLQGAKYMLAVN 117
++ TF S K ++ +G P V E Q + M +N
Sbjct: 693 GVR------TF-SQKEMAFNL-LGLLTPE----------------VVELCQKSPVMADLN 728
Query: 118 D-VGFALGIKSYQDIAKYKKELGA-----KIYGIEPGNEGNQRILDMINNNKFSLKGFRL 171
+ F +K + AK +KEL K IE E ++N N
Sbjct: 729 GGLQFVPELKEFT--AKLRKELVETSEVRKAVSIETALEHK-----VVNGN--------- 772
Query: 172 IEASELASFSQIRRDQRNNIPAVFLSWEPHPINSDLNIHYLPGGEE------ISGFGEAS 225
S A+++Q+ R NI F +P+ + L G + ++GF E
Sbjct: 773 ---SADAAYAQVEIQPRANIQLDFPELKPYKQVKQIAPAELEGLLDLERVIVVTGFAEVG 829
Query: 226 VYTVVRSDY---------LDKCPNISRLLKNIKF 250
+ R+ + L+ C ++ ++ I +
Sbjct: 830 PWGSARTRWEMEAFGEFSLEGCVEMAWIMGFISY 863
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.321 0.138 0.405
Gapped
Lambda K H
0.267 0.0441 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,691,795
Number of extensions: 124766
Number of successful extensions: 392
Number of sequences better than 10.0: 1
Number of HSP's gapped: 371
Number of HSP's successfully gapped: 30
Length of query: 309
Length of database: 5,693,230
Length adjustment: 92
Effective length of query: 217
Effective length of database: 3,462,782
Effective search space: 751423694
Effective search space used: 751423694
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.1 bits)