Query         gi|254780343|ref|YP_003064756.1| probable cation efflux protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 311
No_of_seqs    153 out of 2479
Neff          8.0 
Searched_HMMs 39220
Date          Sun May 29 16:13:31 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780343.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK09509 fieF ferrous iron eff 100.0       0       0  474.8  37.5  291    1-293     1-291 (300)
  2 COG0053 MMT1 Predicted Co/Zn/C 100.0       0       0  456.3  36.1  298    1-300     3-301 (304)
  3 PRK03557 zinc transporter ZitB 100.0       0       0  431.6  32.9  296    6-306    14-311 (312)
  4 pfam01545 Cation_efflux Cation 100.0       0       0  381.9  33.9  268   23-292     2-272 (273)
  5 COG1230 CzcD Co/Zn/Cd efflux s 100.0       0       0  364.0  31.5  277    6-289    17-294 (296)
  6 KOG1485 consensus              100.0       0       0  335.4  27.7  287    8-297   112-406 (412)
  7 TIGR01297 CDF cation diffusion 100.0 2.2E-42       0  287.7  33.0  279   10-290     2-293 (294)
  8 KOG1482 consensus              100.0 1.7E-42       0  288.5  23.3  291    7-309    69-378 (379)
  9 KOG1484 consensus              100.0 2.5E-37 6.3E-42  255.7  25.4  274   10-290    34-348 (354)
 10 KOG1483 consensus              100.0 6.7E-38 1.7E-42  259.3  16.7  273   13-290    11-371 (404)
 11 COG3965 Predicted Co/Zn/Cd cat 100.0 1.7E-30 4.4E-35  212.3  20.9  277    9-287    18-307 (314)
 12 KOG2802 consensus               99.9 1.6E-23 4.1E-28  168.2  14.4  184   11-194   207-406 (503)
 13 COG0053 MMT1 Predicted Co/Zn/C  98.4   8E-06 2.1E-10   55.9  11.5   88   12-107   122-209 (304)
 14 PRK09509 fieF ferrous iron eff  98.3 1.3E-05 3.3E-10   54.6  11.3   87  122-208    14-107 (300)
 15 PRK03557 zinc transporter ZitB  97.8 0.00055 1.4E-08   44.3  10.6   72  137-208    37-115 (312)
 16 pfam01545 Cation_efflux Cation  97.3    0.01 2.7E-07   36.1  12.0   67   36-109   124-190 (273)
 17 COG1230 CzcD Co/Zn/Cd efflux s  97.2  0.0071 1.8E-07   37.2  10.5   86  126-211    29-121 (296)
 18 KOG1485 consensus               97.2  0.0079   2E-07   36.9  10.4   91  118-208   114-211 (412)
 19 TIGR01297 CDF cation diffusion  96.3   0.085 2.2E-06   30.4  12.5   96   11-111   112-211 (294)
 20 KOG1484 consensus               95.2    0.23 5.9E-06   27.6  10.1   88  122-209    38-132 (354)
 21 COG4956 Integral membrane prot  93.9    0.46 1.2E-05   25.7  12.3  145  118-267    45-203 (356)
 22 COG4858 Uncharacterized membra  93.2    0.61 1.5E-05   25.0  11.7  112   84-198    96-212 (226)
 23 PRK10263 DNA translocase FtsK;  85.1     2.7 6.8E-05   20.9  15.3   49  147-195   150-203 (1355)
 24 PRK10019 nickel/cobalt efflux   82.0     3.6 9.1E-05   20.1   6.8   43   55-104    70-112 (278)
 25 TIGR00930 2a30 K-Cl cotranspor  77.2       5 0.00013   19.1  11.0  189   70-276   537-754 (1171)
 26 PRK10597 DNA damage-inducible   73.9     6.1 0.00016   18.6   5.6   59  248-306     4-62  (81)
 27 pfam03780 DUF322 Protein of un  69.3     7.8  0.0002   17.9   8.6   52  236-287    50-105 (108)
 28 PRK10568 periplasmic protein;   68.6       8  0.0002   17.8   6.9   75  201-289    86-164 (203)
 29 pfam09580 Spore_YhcN_YlaJ Spor  68.1     8.2 0.00021   17.8   7.2   67  216-289    68-135 (169)
 30 COG3158 Kup K+ transporter [In  67.0     8.6 0.00022   17.6   4.0   68   32-101   229-308 (627)
 31 pfam00873 ACR_tran AcrB/AcrD/A  65.4     9.3 0.00024   17.4  11.7   64  215-280   579-650 (1021)
 32 COG1183 PssA Phosphatidylserin  64.9     9.5 0.00024   17.4   8.2   39   20-58     45-83  (234)
 33 TIGR00473 pssA CDP-diacylglyce  60.5      11 0.00029   16.9   4.2   50   11-60     28-79  (174)
 34 PRK11023 hypothetical protein;  58.1      12 0.00032   16.6   5.8   71  205-287    80-150 (191)
 35 PRK10745 trkD potassium transp  57.7      13 0.00032   16.6   6.6   75   25-101   217-303 (622)
 36 PRK02983 lysS lysyl-tRNA synth  54.2      14 0.00037   16.2  12.5   44  178-224   205-248 (1099)
 37 COG1279 Lysine efflux permease  51.0      16 0.00041   15.9   7.7   61   35-103    33-93  (202)
 38 pfam09877 DUF2104 Predicted me  50.4      17 0.00042   15.8   5.1   26  166-191    70-95  (100)
 39 pfam06570 DUF1129 Protein of u  49.6      17 0.00044   15.8  13.1   56   82-137    77-135 (206)
 40 KOG2877 consensus               48.4      18 0.00045   15.6   7.7   29   34-62    111-139 (389)
 41 PRK02047 hypothetical protein;  47.6      18 0.00047   15.6   6.4   56  207-265    22-77  (91)
 42 pfam10934 DUF2634 Protein of u  47.6      18 0.00047   15.6   6.0   51  202-253    52-107 (112)
 43 pfam02038 ATP1G1_PLM_MAT8 ATP1  46.6      19 0.00048   15.5   3.5   34   67-101     4-37  (51)
 44 PRK10054 putative MFS-type tra  45.2      20 0.00051   15.3  20.4   42  180-221   296-337 (395)
 45 cd06159 S2P-M50_PDZ_Arch Uncha  42.1      22 0.00057   15.0  10.7  148   74-221    54-243 (263)
 46 PRK08238 hypothetical protein;  40.1      24 0.00061   14.8  18.6   33  178-210   423-455 (481)
 47 PRK10369 heme lyase subunit Nr  39.2      25 0.00063   14.7  10.7   18   84-101   262-279 (552)
 48 PRK11646 multidrug resistance   38.2      26 0.00065   14.7  20.2   44  177-220   292-335 (400)
 49 pfam06181 DUF989 Protein of un  36.2      27  0.0007   14.5   7.2  137   75-221    79-221 (299)
 50 PRK09977 putative Mg(2+) trans  36.1      28  0.0007   14.4  14.6   59  213-281   153-211 (215)
 51 pfam07423 DUF1510 Protein of u  35.6      28 0.00072   14.4   3.4   23  231-253   180-202 (214)
 52 COG4035 Predicted membrane pro  35.3      28 0.00072   14.4   3.3   26  165-190    75-100 (108)
 53 PRK08601 NADH dehydrogenase su  35.3      28 0.00073   14.4   8.2   32   68-100   215-252 (506)
 54 TIGR00538 hemN oxygen-independ  33.5      30 0.00077   14.2   6.3   70  212-292    81-153 (462)
 55 TIGR03428 ureacarb_perm permea  32.2      32 0.00081   14.0  10.7   14  200-213   229-242 (475)
 56 PRK11152 ilvM acetolactate syn  31.8      32 0.00082   14.0   4.2   66  209-284    10-75  (76)
 57 TIGR00900 2A0121 H+ Antiporter  31.7      32 0.00083   14.0  18.3  188   21-223   151-364 (387)
 58 cd04869 ACT_GcvR_2 ACT domains  31.1      33 0.00085   13.9   7.6   48  212-262     9-62  (81)
 59 PRK11049 D-alanine/D-serine/gl  30.8      34 0.00086   13.9   8.7   44  178-221   293-336 (469)
 60 PRK09874 drug efflux system pr  30.7      34 0.00086   13.9  22.1   33    4-36    134-166 (406)
 61 PRK11357 frlA putative fructos  30.6      34 0.00086   13.9  11.3   11   79-89     85-95  (445)
 62 cd04886 ACT_ThrD-II-like C-ter  30.5      34 0.00087   13.9   6.7   60  212-276     8-67  (73)
 63 PRK09881 ATP-dependent peptide  30.3      34 0.00088   13.8  10.8   50   11-77     31-80  (296)
 64 pfam03755 YicC_N YicC-like fam  30.3      34 0.00088   13.8   3.9   44  242-290    26-71  (159)
 65 pfam02705 K_trans K+ potassium  30.2      34 0.00088   13.8   6.7   67   33-101   253-331 (731)
 66 pfam04972 BON Putative phospho  30.0      35 0.00089   13.8   2.5   54  218-282     3-56  (64)
 67 TIGR02380 ECA_wecA undecapreny  29.6      28 0.00071   14.4   1.4   77   70-153   201-277 (349)
 68 PRK08676 hydrogenase membrane   29.5      35  0.0009   13.8  14.4   15  150-164   326-340 (486)
 69 TIGR00827 EIIC-GAT PTS system,  27.4      39 0.00098   13.5   2.5   25  265-289   266-290 (407)
 70 MTH00076 COX2 cytochrome c oxi  26.5      40   0.001   13.4   6.0   31   68-98     51-81  (228)
 71 TIGR02155 PA_CoA_ligase phenyl  26.1      41   0.001   13.4   8.2  109  179-289   269-414 (431)
 72 PRK10417 nikC nickel transport  25.9      41   0.001   13.4  10.3   15   63-77     39-53  (272)
 73 pfam04359 DUF493 Protein of un  25.4      42  0.0011   13.3   6.5   61  207-276    21-83  (90)
 74 PRK11027 hypothetical protein;  25.0      26 0.00065   14.7   0.5   14   67-80     13-26  (110)
 75 PRK10642 proline/glycine betai  25.0      42  0.0011   13.3  15.2   30  195-224   425-455 (490)
 76 PTZ00046 rifin; Provisional     24.8      43  0.0011   13.2   1.7   26  178-203   307-332 (348)
 77 TIGR00368 TIGR00368 Mg chelata  24.5      43  0.0011   13.2   4.5   35  255-292    33-70  (505)
 78 pfam06183 DinI DinI-like famil  24.4      44  0.0011   13.2   3.4   25  215-243     9-33  (65)
 79 pfam11654 DUF2665 Protein of u  24.2      44  0.0011   13.2   2.2   18  177-194     5-22  (47)
 80 pfam04219 DUF413 Protein of un  24.2      28 0.00072   14.4   0.6   14   67-80      4-17  (94)
 81 COG0390 ABC-type uncharacteriz  24.2      44  0.0011   13.2  10.3   18  144-161    86-103 (256)
 82 PRK12704 phosphodiesterase; Pr  24.0      44  0.0011   13.1   5.6   64  216-287   380-447 (455)
 83 TIGR01478 STEVOR variant surfa  23.9      45  0.0011   13.1  11.7  100   17-141   197-303 (315)
 84 pfam07444 Ycf66_N Ycf66 protei  23.6      45  0.0012   13.1   3.4   43  153-197    33-79  (84)
 85 TIGR01477 RIFIN variant surfac  23.5      16 0.00042   15.9  -0.7   24  177-200   353-376 (395)
 86 pfam01076 Mob_Pre Plasmid reco  23.2      46  0.0012   13.0   7.7   63  243-305    77-146 (196)
 87 TIGR00794 kup potassium uptake  22.7      47  0.0012   13.0  10.7   68   32-101   267-350 (814)
 88 TIGR00776 RhaT RhaT L-rhamnose  22.7      47  0.0012   13.0   5.8  100   50-156   132-247 (336)
 89 COG3548 Predicted integral mem  22.1      48  0.0012   12.9  12.7   80   23-109    29-111 (197)
 90 pfam11381 DUF3185 Protein of u  21.3      50  0.0013   12.8   2.4   47   82-128     6-55  (59)
 91 PRK00907 hypothetical protein;  21.3      50  0.0013   12.8   6.1   63  207-276    23-85  (92)
 92 PRK13021 secF preprotein trans  21.1      51  0.0013   12.8  11.2   56  157-212   230-286 (297)
 93 TIGR02876 spore_yqfD sporulati  21.0      51  0.0013   12.8   2.1   34  213-249   140-174 (406)
 94 cd04900 ACT_UUR-like_1 ACT dom  20.7      52  0.0013   12.7   7.0   61  212-276    11-72  (73)

No 1  
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=100.00  E-value=0  Score=474.78  Aligned_cols=291  Identities=26%  Similarity=0.454  Sum_probs=277.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf             98536788999999999999999999999999972799999999999999999999999999548998668724146779
Q gi|254780343|r    1 MKVDDQNNMIRMALWGIPISAAITALKIIAWYVTGFISLLSDGLESIVNIITAIISYFTLKYAYRPADNTHPFGHQKAEY   80 (311)
Q Consensus         1 m~~~~~~~~~r~~~~~~~~n~~~~~~k~~~g~~t~S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r~E~   80 (311)
                      |..+..+...|.+++++.+|++++++|+++|++|||.||+|||+||+.|++++++.+++.|.++||||++|||||+|+|+
T Consensus         1 ~~~~~~~~~~raa~~si~~n~~L~i~K~~~g~~sgS~AllADa~hSl~D~~s~~~~l~~~~~s~kp~d~~hPyGhgR~E~   80 (300)
T PRK09509          1 MNQSYARLVSRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIAASLTNLLVVRYSLQPADDEHTFGHGKAES   80 (300)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf             97489999999999999999999999999999945099999899999999999999999999659997779970878999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf             99989688999988999999999986300223221026788887201246799999874103305778759986653788
Q gi|254780343|r   81 IAAVVEGLLMTNIALIILYESWHNMSHSPSNDFSIMGLFIGFMANIISLFWGKWLIYSGEKNHSAAFKANGQHFVADVVM  160 (311)
Q Consensus        81 l~~l~~~~~l~~~~~~i~~es~~~l~~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~  160 (311)
                      +++++.++++++.++++++|+++++++|++...+.+++++++++.+++.++++|..+.+++.+|++++|+++|+++|+++
T Consensus        81 l~al~~~i~i~~~~~~i~~esi~~l~~p~~~~~~~~~i~v~~~~iv~~~~l~~~~~~~~~~~~S~~l~A~a~h~~sD~~~  160 (300)
T PRK09509         81 LAALAQSMFISGSALFLFLTGIQHLISPTPMNDPGVGVGVTLVALICTIILVTFQRWVVRKTQSQAVRADMLHYQSDVMM  160 (300)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999846986466544899999999999999999999986514757677777899989997


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEE
Q ss_conf             78888877653027722468766899999999998999999899740445551458999998641588831151576475
Q gi|254780343|r  161 SAGVLCGLLLVLITEYTVLDSIIACFMACNILYQGCKVISSSIKNLMDAAVKPEHLEKIKNIIALNASGSIGIHDLKIRQ  240 (311)
Q Consensus       161 s~~vii~~~~~~~~~~~~~D~i~ai~i~~~i~~~~~~~~~~~~~~Ll~~s~~~~~~~~i~~~i~~~~~~V~~v~~l~~~~  240 (311)
                      |+++++|+++.++ ||+|+||+++++++++|++.++++++++.+.|+|+++|+++.++|++.+ ++.|||.++|++|+|+
T Consensus       161 s~~vlig~~~~~~-g~~~~D~i~aliIs~~I~~~~~~l~~es~~~Lld~~~~~e~~~~I~~~i-~~~~gV~~vh~lr~r~  238 (300)
T PRK09509        161 NGAILLALGLSWY-GWHRADALFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDIV-TSWPGVSGAHDLRTRQ  238 (300)
T ss_pred             HHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH-HCCCCCCCCEEEEEEE
T ss_conf             0099999999995-8325758999999999999999999999999857799989999999999-7288987702689898


Q ss_pred             ECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCC
Q ss_conf             57907999999988799989999999999999998779868999960588764
Q gi|254780343|r  241 AGATFFINFHLVVDSHMIVLDAHKICNKLERSLEENIGQAIITIHIEPANEVT  293 (311)
Q Consensus       241 ~G~~~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~~~~~~v~ih~ep~~~~~  293 (311)
                      +|++.++|+|+++|+++|+.|+|+|.+++|+++++++|..+++||+|||+..+
T Consensus       239 ~G~~~~vd~hI~v~~~lsv~eaH~I~~~ve~~i~~~~~~~~v~IH~eP~~~~~  291 (300)
T PRK09509        239 SGPTRFIQLHLEMEDNLPLVQAHMVADQVEQALLRRFPGSDVIIHQDPCSVVP  291 (300)
T ss_pred             ECCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
T ss_conf             58929999999989799899999999999999997679981899869998882


No 2  
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=100.00  E-value=0  Score=456.29  Aligned_cols=298  Identities=31%  Similarity=0.524  Sum_probs=285.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf             98536788999999999999999999999999972799999999999999999999999999548998668724146779
Q gi|254780343|r    1 MKVDDQNNMIRMALWGIPISAAITALKIIAWYVTGFISLLSDGLESIVNIITAIISYFTLKYAYRPADNTHPFGHQKAEY   80 (311)
Q Consensus         1 m~~~~~~~~~r~~~~~~~~n~~~~~~k~~~g~~t~S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r~E~   80 (311)
                      |+.++.+...|.+++++..|+++++.|+++|+++||.||+||++||+.|++++++.++++|+|+||||++|||||+|+|+
T Consensus         3 ~~~~~~~~~~~~~~~sl~~nl~l~~~K~~~g~~~gS~ALlADaihs~~D~~~si~~l~~l~~s~kp~d~~HpyGh~k~E~   82 (304)
T COG0053           3 MEEERLKLVRRAALISLAVNLALALLKLIAGILTGSVALLADAIHSLSDIVASLIVLIGLRISSKPPDRDHPYGHGKAET   82 (304)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
T ss_conf             40777999999999999999999999999984036599999999889999999999999999559997779983277999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf             99989688999988999999999986300223221026788887201246799999874103305778759986653788
Q gi|254780343|r   81 IAAVVEGLLMTNIALIILYESWHNMSHSPSNDFSIMGLFIGFMANIISLFWGKWLIYSGEKNHSAAFKANGQHFVADVVM  160 (311)
Q Consensus        81 l~~l~~~~~l~~~~~~i~~es~~~l~~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~  160 (311)
                      +++++.+++++++|++++++++.++++|++++...+++++++++.+++.++++|.++.++|.+|+++.|+++|+++|+++
T Consensus        83 l~sl~~~~~i~~~g~~i~~~a~~~~~~~~~~~~~~~~~~v~l~s~~~~~~l~~~~~~~~kk~~S~aL~Ada~h~~sD~~t  162 (304)
T COG0053          83 LASLIVSILIFAAGFEILLEAIKRLISPQPVEPPLLALGVALISIVIKEALYRYLRRVGKKTNSQALIADALHHRSDVLT  162 (304)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999981677788517899999999999999999999999982889889656888729999


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEE
Q ss_conf             78888877653027722468766899999999998999999899740445551458999998641588831151576475
Q gi|254780343|r  161 SAGVLCGLLLVLITEYTVLDSIIACFMACNILYQGCKVISSSIKNLMDAAVKPEHLEKIKNIIALNASGSIGIHDLKIRQ  240 (311)
Q Consensus       161 s~~vii~~~~~~~~~~~~~D~i~ai~i~~~i~~~~~~~~~~~~~~Ll~~s~~~~~~~~i~~~i~~~~~~V~~v~~l~~~~  240 (311)
                      |+++++|++ ..++||+|+||+++++|+++|++.+++++|++.+.|+|+++|+++.+++++++ .+.|+|.++|++|+|+
T Consensus       163 s~~~lvgl~-~~~~g~~~lD~i~a~~I~~~Il~~~~~~~~~s~~~L~d~~~~~~~~~~i~~~i-~~~~~V~~v~~lr~R~  240 (304)
T COG0053         163 SLAVLVGLL-GSLLGWPWLDPLAALLISLYILKTGFRLFKESVNELMDAALDPEDLEKIRAII-LSVPGVKGVHDLRTRK  240 (304)
T ss_pred             HHHHHHHHH-HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH-HCCCCCCCCHHEEEEE
T ss_conf             999999999-99928398989999999999999999999999999847689989999999998-4664552301015666


Q ss_pred             ECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCC-CCEEEEEEECCCCCCCCCCCCC
Q ss_conf             57907999999988799989999999999999998779-8689999605887645554888
Q gi|254780343|r  241 AGATFFINFHLVVDSHMIVLDAHKICNKLERSLEENIG-QAIITIHIEPANEVTHGIHVPL  300 (311)
Q Consensus       241 ~G~~~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~~~-~~~v~ih~ep~~~~~~~~~~~~  300 (311)
                      .|+..++++|+++||+++++|+|+|++++|+++++.+| +.+++||+||+.+..+..+...
T Consensus       241 ~G~~~~id~~i~v~~~ls~~eah~I~~~ie~~i~~~~~~~~~v~IhveP~~~~~~~~~~~~  301 (304)
T COG0053         241 SGSRIFIDVHIEVDPDLSLEEAHEIADEVEKRIKKEFPKVADVTIHVEPLGEKEEEKEREE  301 (304)
T ss_pred             ECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCC
T ss_conf             5887999999971999988889999999999999756877528999556752002223355


No 3  
>PRK03557 zinc transporter ZitB; Provisional
Probab=100.00  E-value=0  Score=431.63  Aligned_cols=296  Identities=17%  Similarity=0.349  Sum_probs=265.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             78899999999999999999999999997279999999999999999999999999954899866872414677999989
Q gi|254780343|r    6 QNNMIRMALWGIPISAAITALKIIAWYVTGFISLLSDGLESIVNIITAIISYFTLKYAYRPADNTHPFGHQKAEYIAAVV   85 (311)
Q Consensus         6 ~~~~~r~~~~~~~~n~~~~~~k~~~g~~t~S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~   85 (311)
                      +++..|+.++++++|++++++|+++|+++||+||+|||+||+.|+++.++++++.|+++||||++|||||+|+|.+++++
T Consensus        14 ~~~~~rrl~~a~~l~~~~~v~eii~G~~s~SlALlaDa~H~l~D~~~~~i~l~a~~~a~kp~d~~~tyG~~R~E~laAl~   93 (312)
T PRK03557         14 EDNNARRLLYAFGVTAGFMLVEVVGGFLSGSLALLADAGHMLTDAAALLFALLAVQFSRRPPTIRHTFGWLRLTTLAAFV   93 (312)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             77663277999999999999999999984149999999999989999999999999975899865785399999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             68899998899999999998630022322102678888720124679999987410330577875998665378878888
Q gi|254780343|r   86 EGLLMTNIALIILYESWHNMSHSPSNDFSIMGLFIGFMANIISLFWGKWLIYSGEKNHSAAFKANGQHFVADVVMSAGVL  165 (311)
Q Consensus        86 ~~~~l~~~~~~i~~es~~~l~~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vi  165 (311)
                      ++++++++++++++||++|+++|+++... ..++++++++++|.+.+ +..+.+++.+|.+++|+++|.++|+++|++++
T Consensus        94 ~~i~L~~~~~~i~~eai~rl~~p~~i~~~-~~l~va~~gl~~n~~~~-~~l~~g~~~~s~nl~Aa~lH~~~D~l~Svgvi  171 (312)
T PRK03557         94 NAIALVVITILIVWEAIERFRTPRPVAGG-MMMAIAVAGLLANIFSF-WILHHGSEEKNLNVRAAALHVLGDLLGSVGAI  171 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCC-HHHHHHHHHHHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999984798777760-36999999999999999-99772244588899999999997899999999


Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEE
Q ss_conf             87765302772246876689999999999899999989974044555145899999864158883115157647557907
Q gi|254780343|r  166 CGLLLVLITEYTVLDSIIACFMACNILYQGCKVISSSIKNLMDAAVKPEHLEKIKNIIALNASGSIGIHDLKIRQAGATF  245 (311)
Q Consensus       166 i~~~~~~~~~~~~~D~i~ai~i~~~i~~~~~~~~~~~~~~Ll~~s~~~~~~~~i~~~i~~~~~~V~~v~~l~~~~~G~~~  245 (311)
                      ++.++.+++||+|+||+++++++++|++++++++|++.+.|||++|+..+.+++++.+.++.|||.++||+|+|+.|++.
T Consensus       172 ia~i~i~~~g~~~~Dpi~si~Ia~~Il~sa~~llr~s~~iLld~~P~~i~~~~i~~~i~~~i~gV~~vHdlhvW~~g~~~  251 (312)
T PRK03557        172 IAALIIIWTGWTPADPILSILVSVLVLRSAWRLLKDSVNELLEGAPVSLDINELKRRLCREIPEVRNVHHVHVWMVGEKP  251 (312)
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCEEEEEEEEEEECCCE
T ss_conf             99999998098502479889999999998999999999999826999899999999998608983111245750677851


Q ss_pred             EEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEE--CCCCCCCCCCCCCCHHHHH
Q ss_conf             999999988799989999999999999998779868999960--5887645554888314565
Q gi|254780343|r  246 FINFHLVVDSHMIVLDAHKICNKLERSLEENIGQAIITIHIE--PANEVTHGIHVPLKENKNQ  306 (311)
Q Consensus       246 ~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~~~~~~v~ih~e--p~~~~~~~~~~~~~e~~~~  306 (311)
                      ++++|+++++.   .+.+++.+++|+.++++|++.++|||+|  ||..++..+...-+++.+|
T Consensus       252 ~~~~Hv~v~~~---~~~~~i~~~i~~~l~~~~gI~h~TIq~E~~~c~~~~c~~~~~~~~~~h~  311 (312)
T PRK03557        252 VMTLHVQVIPP---HDHDALLDRIQDYLMHHYQIEHATIQMEYQPCHGPDCHLNQGVSGHSHH  311 (312)
T ss_pred             EEEEEEEECCC---CCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf             59999996898---8999999999999998569984799413787898755345698767789


No 4  
>pfam01545 Cation_efflux Cation efflux family. Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are thought to be efflux pumps that remove these ions from cells.
Probab=100.00  E-value=0  Score=381.85  Aligned_cols=268  Identities=32%  Similarity=0.604  Sum_probs=253.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999727999999999999999999999999995489986687241467799998968899998899999999
Q gi|254780343|r   23 ITALKIIAWYVTGFISLLSDGLESIVNIITAIISYFTLKYAYRPADNTHPFGHQKAEYIAAVVEGLLMTNIALIILYESW  102 (311)
Q Consensus        23 ~~~~k~~~g~~t~S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~i~~es~  102 (311)
                      +++.|+++|++|||.||++|++||+.|++++++++++.+.++||||++|||||+|+|+++++++++++++++++++++++
T Consensus         2 l~~~~~~~~~~t~S~allada~~sl~D~~~~~~~l~~~~~~~k~~~~~~pfG~~r~E~l~~l~~~i~l~~~~~~~~~~si   81 (273)
T pfam01545         2 LALAKLAAGLLTGSLALLADALHSLIDLLSSLLALLALRLSSRPPDKRHPFGHGRLEVLAALIVSLLLLGVGVFILYESI   81 (273)
T ss_pred             EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             24178899998523999999999999999999999999996599977799708889899999999999999999999999


Q ss_pred             HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf             99863002232210267888872012467999998741033--0577875998665378878888877653027722468
Q gi|254780343|r  103 HNMSHSPSNDFSIMGLFIGFMANIISLFWGKWLIYSGEKNH--SAAFKANGQHFVADVVMSAGVLCGLLLVLITEYTVLD  180 (311)
Q Consensus       103 ~~l~~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~~~--s~~l~a~~~~~~~D~~~s~~vii~~~~~~~~~~~~~D  180 (311)
                      +++++|++.+...+.+ +.+++.+++.+.+++.++.+++.+  |++++++++|+++|.++|++++++.++.++++++|+|
T Consensus        82 ~~l~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~~~~~~~~~~~~~~~~~D  160 (273)
T pfam01545        82 ERLISPEEIEPPGILL-LALISLVVNLLLALYLRRAGRKIGSKSPALRADALHALVDVLGSLAVLIGLLLILLTGLYIAD  160 (273)
T ss_pred             HHHHHCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf             9998266776137899-999999999999999998755147899899999999999999998999999999971967777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHH
Q ss_conf             76689999999999899999989974044555145899999864158883115157647557907999999988799989
Q gi|254780343|r  181 SIIACFMACNILYQGCKVISSSIKNLMDAAVKPEHLEKIKNIIALNASGSIGIHDLKIRQAGATFFINFHLVVDSHMIVL  260 (311)
Q Consensus       181 ~i~ai~i~~~i~~~~~~~~~~~~~~Ll~~s~~~~~~~~i~~~i~~~~~~V~~v~~l~~~~~G~~~~v~~~i~v~~~~~~~  260 (311)
                      |++++++++++++.+++++|++..+|+|++|+++..+++++.+. +.++|.++|++|+|+.|++.++++|+++|+++|++
T Consensus       161 ~i~~iii~~~ii~~~~~~~~~s~~~Ll~~~~~~~~~~~i~~~i~-~~~~v~~v~~~~~~~~G~~~~v~v~i~v~~~~~~~  239 (273)
T pfam01545       161 PLASLLIALLILYTGLRLLKESLSELLGASPDPELVDKIRKALE-ALPGVLGVHDLRVWKSGPTLLVEIHIEVDPDLTVE  239 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-CCCCCEEEEEEEEEEECCCEEEEEEEEECCCCCHH
T ss_conf             89999999999999999999999999677998678999999996-38995034357999968959999999989999899


Q ss_pred             HHHHHHHHHHHHHHHHCC-CCEEEEEEECCCCC
Q ss_conf             999999999999998779-86899996058876
Q gi|254780343|r  261 DAHKICNKLERSLEENIG-QAIITIHIEPANEV  292 (311)
Q Consensus       261 eah~i~~~ie~~l~~~~~-~~~v~ih~ep~~~~  292 (311)
                      |+|++++++|+.+++++| +.+++||+||+++.
T Consensus       240 ~~~~i~~~i~~~l~~~~~~i~~~~i~~~~~~~~  272 (273)
T pfam01545       240 EAHEIADEIEKALKEKFPGIVHVTIHVEPAPEV  272 (273)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf             999999999999998689988699981599988


No 5  
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=100.00  E-value=0  Score=363.97  Aligned_cols=277  Identities=22%  Similarity=0.377  Sum_probs=256.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             78899999999999999999999999997279999999999999999999999999954899866872414677999989
Q gi|254780343|r    6 QNNMIRMALWGIPISAAITALKIIAWYVTGFISLLSDGLESIVNIITAIISYFTLKYAYRPADNTHPFGHQKAEYIAAVV   85 (311)
Q Consensus         6 ~~~~~r~~~~~~~~n~~~~~~k~~~g~~t~S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~   85 (311)
                      +.+..|..++++.+|..++++|+++|++|||+||+||+.|++.|+++.++++++.++++||++++|||||+|+|.+++++
T Consensus        17 ~~~~~r~l~~~~~L~~~f~~iE~i~g~~s~SlaLLADa~Hml~D~~al~lal~A~~~a~r~~~~~~TfGy~R~eiLaa~~   96 (296)
T COG1230          17 NPRNERRLLIALLLNLAFMLIEIIGGLLTGSLALLADALHMLSDALALLLALIAIKLARRPATKRFTFGYKRLEILAAFL   96 (296)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             30578899999999999999999999996569999737778899999999999999841777787773076899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             68899998899999999998630022322102678888720124679999987410330577875998665378878888
Q gi|254780343|r   86 EGLLMTNIALIILYESWHNMSHSPSNDFSIMGLFIGFMANIISLFWGKWLIYSGEKNHSAAFKANGQHFVADVVMSAGVL  165 (311)
Q Consensus        86 ~~~~l~~~~~~i~~es~~~l~~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vi  165 (311)
                      ++++++..++++++|+++|+++|++++. ...++++++++++|.+.++.+.+.  +.+|.|+++.++|.++|+++|++++
T Consensus        97 nav~Li~~s~~I~~EAi~R~~~P~~i~~-~~ml~va~~GL~vN~~~a~ll~~~--~~~~lN~r~a~LHvl~D~Lgsv~vI  173 (296)
T COG1230          97 NALLLIVVSLLILWEAIQRLLAPPPIHY-SGMLVVAIIGLVVNLVSALLLHKG--HEENLNMRGAYLHVLGDALGSVGVI  173 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999648888886-145999999999999999996078--7434037789999999999779999


Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEECC-E
Q ss_conf             877653027722468766899999999998999999899740445551458999998641588831151576475579-0
Q gi|254780343|r  166 CGLLLVLITEYTVLDSIIACFMACNILYQGCKVISSSIKNLMDAAVKPEHLEKIKNIIALNASGSIGIHDLKIRQAGA-T  244 (311)
Q Consensus       166 i~~~~~~~~~~~~~D~i~ai~i~~~i~~~~~~~~~~~~~~Ll~~s~~~~~~~~i~~~i~~~~~~V~~v~~l~~~~~G~-~  244 (311)
                      ++.+++++++|+|+||+.+++++++++..+++++|++.+.|++.+|+..+.+++++.+. +.|||.++||+|+|+.++ .
T Consensus       174 ia~i~i~~~~w~~~Dpi~si~i~~lil~~a~~l~k~s~~iLle~~P~~id~~~~~~~l~-~~~~v~~vhdlHvWsi~~~~  252 (296)
T COG1230         174 IAAIVIRFTGWSWLDPILSIVIALLILSSAWPLLKESLNILLEGVPEGIDIDKVREALL-RIPGVASVHDLHVWSITGGE  252 (296)
T ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH-CCCCCCCEEECCCCCCCCCC
T ss_conf             99999999388766569999999999997999999999998605998668899999985-59974111234537789984


Q ss_pred             EEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf             799999998879998999999999999999877986899996058
Q gi|254780343|r  245 FFINFHLVVDSHMIVLDAHKICNKLERSLEENIGQAIITIHIEPA  289 (311)
Q Consensus       245 ~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~~~~~~v~ih~ep~  289 (311)
                      ...++|+++++..+-+   .+.+++++.+.++|++.|+|||+|+.
T Consensus       253 ~~~t~Hv~v~~~~~~~---~~~~~~~~~l~~~~~I~hvTiQ~e~~  294 (296)
T COG1230         253 HALTLHVVVDEVADAD---AALDQIVRRLLEKYGIEHVTIQLETE  294 (296)
T ss_pred             EEEEEEEEECCCCCHH---HHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf             3689999825766668---88999999986643963699872478


No 6  
>KOG1485 consensus
Probab=100.00  E-value=0  Score=335.40  Aligned_cols=287  Identities=21%  Similarity=0.307  Sum_probs=250.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             89999999999999999999999999727999999999999999999999999995489986687241467799998968
Q gi|254780343|r    8 NMIRMALWGIPISAAITALKIIAWYVTGFISLLSDGLESIVNIITAIISYFTLKYAYRPADNTHPFGHQKAEYIAAVVEG   87 (311)
Q Consensus         8 ~~~r~~~~~~~~n~~~~~~k~~~g~~t~S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~   87 (311)
                      ...|.++++++.|++++++|+++|+.+||+|++||++||+.|+++.++.+++.+.++|||+.+||||++|+|+++.+..+
T Consensus       112 ~~~~~~~i~l~~Nigl~vaK~~as~~sgS~aIiAsavdSl~Dl~s~fvll~s~~~~~k~~~~~YP~G~~r~EtvG~i~~S  191 (412)
T KOG1485         112 AERRAAWIGLAANIGLAVAKVVASYLSGSMAIIASAVDSLSDLVSGFVLLFSLRAAKKKPTYEYPRGRGRVETVGLIAVS  191 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCHHHHHHH
T ss_conf             79999999999999999999988884120999998999999999999999999986389821188987752001299999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCC-------C-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             899998899999999998630022-------3-22102678888720124679999987410330577875998665378
Q gi|254780343|r   88 LLMTNIALIILYESWHNMSHSPSN-------D-FSIMGLFIGFMANIISLFWGKWLIYSGEKNHSAAFKANGQHFVADVV  159 (311)
Q Consensus        88 ~~l~~~~~~i~~es~~~l~~~~~~-------~-~~~~~~~i~~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~  159 (311)
                      .+|..+|..++++|..++..|...       + ....++++.++......+.++..++.+++.+|..++|.+||+|+|++
T Consensus       192 ~iMa~agv~ii~sSl~~i~~~~~~~~~~~~~q~~~~~a~~~i~i~is~~~vk~~l~~~c~~~~ns~iv~a~A~dHr~D~l  271 (412)
T KOG1485         192 VIMAMAGVQIIWSSLRLIVGPHAIGHHHNPSQLIFINALWLIAIMISAKEVKLRLTLYCAIKTNSNIVRANAWDHRNDVL  271 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCHHHHHEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             99999988999986786514321200158566414300203100026888999999998873682789999888776898


Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEE
Q ss_conf             87888887765302772246876689999999999899999989974044555145899999864158883115157647
Q gi|254780343|r  160 MSAGVLCGLLLVLITEYTVLDSIIACFMACNILYQGCKVISSSIKNLMDAAVKPEHLEKIKNIIALNASGSIGIHDLKIR  239 (311)
Q Consensus       160 ~s~~vii~~~~~~~~~~~~~D~i~ai~i~~~i~~~~~~~~~~~~~~Ll~~s~~~~~~~~i~~~i~~~~~~V~~v~~l~~~  239 (311)
                      ++..++++..+.++. |+|+||+++++++.+++++|.+...+++.+|+|++++|+.++++...+-.+.+.+..++.++.+
T Consensus       272 Tn~vaLva~~la~~~-~~~lDP~gailVS~~ii~t~~~t~~~~i~~Lvg~~a~pe~L~~~~~~~l~~~~~i~~idtv~~y  350 (412)
T KOG1485         272 TNSVALVAASLAYYY-NYWLDPIGAILVSTYIIYTGGRTGLENIKELVGRSAPPEYLEIITYLILQHGKLIKHIDTVRAY  350 (412)
T ss_pred             HHHHHHHHHHHHHHH-HHCCCCHHHHHHHEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf             889999999987753-3102631333341002434127899889998188899799999999998506753234146532


Q ss_pred             EECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC
Q ss_conf             5579079999999887999899999999999999987798689999605887645554
Q gi|254780343|r  240 QAGATFFINFHLVVDSHMIVLDAHKICNKLERSLEENIGQAIITIHIEPANEVTHGIH  297 (311)
Q Consensus       240 ~~G~~~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~~~~~~v~ih~ep~~~~~~~~~  297 (311)
                      ..|...++++|+++|+++++.++|++.|-+++.|+....+.++++|.|.  +..|+.+
T Consensus       351 ~~g~~~~Vev~ivl~~~~~l~~ah~i~E~lq~~ie~l~ever~fvh~d~--e~~hr~~  406 (412)
T KOG1485         351 TFGSHYFVEVHIVLDEDLSLSVAHDIGETLQKKIELLPEVERAFVHIDY--EFLHRPH  406 (412)
T ss_pred             CCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCHHEEEEEECCC--CCCCCCH
T ss_conf             0352589997530488876178778779999998646122044354475--3468806


No 7  
>TIGR01297 CDF cation diffusion facilitator family transporter; InterPro: IPR002524   Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells , , however others are implicated in ion uptake . The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0016020 membrane.
Probab=100.00  E-value=2.2e-42  Score=287.73  Aligned_cols=279  Identities=29%  Similarity=0.508  Sum_probs=261.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999972799999999999999999999999999548998668724146779999896889
Q gi|254780343|r   10 IRMALWGIPISAAITALKIIAWYVTGFISLLSDGLESIVNIITAIISYFTLKYAYRPADNTHPFGHQKAEYIAAVVEGLL   89 (311)
Q Consensus        10 ~r~~~~~~~~n~~~~~~k~~~g~~t~S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~~~   89 (311)
                      .|..++++..|+.+++.|+++|+++||.++++|+.|++.|..+..+.+++.+.++||||++|||||+|.|.+++++++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~g~~~~s~~~~~d~~h~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~e~~~~~~~~~~   81 (294)
T TIGR01297         2 KRALLISLLLNLLLLLVELVGGLLSGSLALLADALHSLSDVLALLIALLALRLSEKPPDERHPFGYGRAEVLAALLNGLF   81 (294)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             31688899999999999999998730478888777889999999999999987415775556653268999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH---HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH--HHCCC--CHHHHHHHHHHHHHHHHHH
Q ss_conf             999889999999999863---0022322102678888720124679999987--41033--0577875998665378878
Q gi|254780343|r   90 MTNIALIILYESWHNMSH---SPSNDFSIMGLFIGFMANIISLFWGKWLIYS--GEKNH--SAAFKANGQHFVADVVMSA  162 (311)
Q Consensus        90 l~~~~~~i~~es~~~l~~---~~~~~~~~~~~~i~~~~~~v~~~~~~~~~~~--~~~~~--s~~l~a~~~~~~~D~~~s~  162 (311)
                      +...+.++.++++.++.+   |+ .... ..+.+...+.+++....++..+.  +++.+  |.+++++++|.+.|.++|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~~~~~  159 (294)
T TIGR01297        82 LVVVALFILYEAIERLLNGHAPE-EIDG-LALIVAGLGLLVNLILALLLLRGHGGHKLGHGSLNLRAAALHVLGDLLGSL  159 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCC-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999875002441-1357-899999999999999999998642022110014789999999888889999


Q ss_pred             HHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHCCCCCCEEEEEEEE
Q ss_conf             888877653027--72246876689999999999899999989974044555-145899999864158883115157647
Q gi|254780343|r  163 GVLCGLLLVLIT--EYTVLDSIIACFMACNILYQGCKVISSSIKNLMDAAVK-PEHLEKIKNIIALNASGSIGIHDLKIR  239 (311)
Q Consensus       163 ~vii~~~~~~~~--~~~~~D~i~ai~i~~~i~~~~~~~~~~~~~~Ll~~s~~-~~~~~~i~~~i~~~~~~V~~v~~l~~~  239 (311)
                      +++++..+.+++  +|+|.||+.++++++++++.++++.+++...|+|.+|+ ..+..++.+.+....|++.++|++|+|
T Consensus       160 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (294)
T TIGR01297       160 GVLIGALLIYFGPFGWTWADPIAALLISLLILYTAFRLLKESINVLLDGAPPELLDLIEVKKVLLLSIPGVKGVHDLHIW  239 (294)
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHEEE
T ss_conf             99999999874025503777899999999999989999999999985103530356999999997515641110221023


Q ss_pred             EECC-EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHC--CCCEEEEEEECCC
Q ss_conf             5579-0799999998879998999999999999999877--9868999960588
Q gi|254780343|r  240 QAGA-TFFINFHLVVDSHMIVLDAHKICNKLERSLEENI--GQAIITIHIEPAN  290 (311)
Q Consensus       240 ~~G~-~~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~~--~~~~v~ih~ep~~  290 (311)
                      +.|+ ..++++|+.+++..+.+++|++..+.++.+.++.  +..++++|+||+.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (294)
T TIGR01297       240 RIGPGKLVLDVHVEVDPDLDLKEAHDIALEIEREILKRHPFGIEHVTIHVEPLG  293 (294)
T ss_pred             EECCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCC
T ss_conf             214672578988875464325678999999999886405665316888740368


No 8  
>KOG1482 consensus
Probab=100.00  E-value=1.7e-42  Score=288.49  Aligned_cols=291  Identities=22%  Similarity=0.345  Sum_probs=256.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             88999999999999999999999999972799999999999999999999999999548998668724146779999896
Q gi|254780343|r    7 NNMIRMALWGIPISAAITALKIIAWYVTGFISLLSDGLESIVNIITAIISYFTLKYAYRPADNTHPFGHQKAEYIAAVVE   86 (311)
Q Consensus         7 ~~~~r~~~~~~~~n~~~~~~k~~~g~~t~S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~   86 (311)
                      ....|.++.+.++.+.+++.++++|+..||+|+++||.|.+.|+.+-.++++++|.+++||+++.+|||.|.|.++++++
T Consensus        69 ~~~~r~L~~~~~l~l~fm~~E~vGg~~a~SLAImTDAaHlLsD~~sf~isl~slw~s~~pa~~r~sfG~~R~Evlgal~S  148 (379)
T KOG1482          69 RAAERKLSIAAALCLVFMIGEVVGGYKANSLAIMTDAAHLLSDVASFIISLFSLWLSSRPATKRMSFGFHRAEVLGALVS  148 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCEECCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCEEHHHHHHHHHH
T ss_conf             66666699999999999999984773100024453446788889999999989987037998723114344777778998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH--HCCC---------------CHHHHH
Q ss_conf             88999988999999999986300223221026788887201246799999874--1033---------------057787
Q gi|254780343|r   87 GLLMTNIALIILYESWHNMSHSPSNDFSIMGLFIGFMANIISLFWGKWLIYSG--EKNH---------------SAAFKA  149 (311)
Q Consensus        87 ~~~l~~~~~~i~~es~~~l~~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~~~~--~~~~---------------s~~l~a  149 (311)
                      .+.++.+.+.+++++++|+++++.+..+.++++++.++.++|..+...+...+  .+..               +.|++|
T Consensus       149 v~~IW~~tgvLV~~Ai~Rl~s~~~ev~g~~m~i~a~~gv~vNiim~~vL~~~~h~h~H~~~~s~g~~h~~~~~~n~nvra  228 (379)
T KOG1482         149 VLLIWVVTGVLVYEAIQRLLSGDYEVNGGIMLITAAVGVAVNIIMGFVLHQSGHGHSHGGSHSHGHSHDHGEELNLNVRA  228 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCEEECCEEEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf             88888766445998776560675065363799875323334435321011467777788887767655544443347788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             5998665378878888877653027-722468766899999999998999999899740445551458999998641588
Q gi|254780343|r  150 NGQHFVADVVMSAGVLCGLLLVLIT-EYTVLDSIIACFMACNILYQGCKVISSSIKNLMDAAVKPEHLEKIKNIIALNAS  228 (311)
Q Consensus       150 ~~~~~~~D~~~s~~vii~~~~~~~~-~~~~~D~i~ai~i~~~i~~~~~~~~~~~~~~Ll~~s~~~~~~~~i~~~i~~~~~  228 (311)
                      .+.|.+.|.+.|+||+++..+.+|. +|...||+..++.+.+.+.+..+++|+.+..||+.+|..-+.+++++.+ +..+
T Consensus       229 AyiHVlGDliQSvGV~iaa~Ii~f~P~~~i~DpICT~~FSiivl~TT~~i~rd~~~iLmE~~P~~~d~~~~~~~l-~~ie  307 (379)
T KOG1482         229 AFVHVLGDLIQSVGVLIAALIIYFKPEYKIADPICTFVFSIIVLGTTITILRDILGILMEGTPRNLDFDKVKKGL-LSIE  307 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHEEEEECCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH-HHHC
T ss_conf             999999999998878761225785544340572454467899998679999999999753897657678999877-4211


Q ss_pred             CCCEEEEEEEEEECC-EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCHHHHHH
Q ss_conf             831151576475579-0799999998879998999999999999999877986899996058876455548883145654
Q gi|254780343|r  229 GSIGIHDLKIRQAGA-TFFINFHLVVDSHMIVLDAHKICNKLERSLEENIGQAIITIHIEPANEVTHGIHVPLKENKNQC  307 (311)
Q Consensus       229 ~V~~v~~l~~~~~G~-~~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~~~~~~v~ih~ep~~~~~~~~~~~~~e~~~~~  307 (311)
                      ||+.+|++|+|.++- +..+++|+..++.   .+++.+.+++.+.++++|+..++|||+||+.+.-        ++|..|
T Consensus       308 gV~~VHdLhIWsiTv~k~~ls~Hv~i~~~---ad~~~vL~~~~~~i~~~~~~~~vTiQie~~~~~~--------~~c~~c  376 (379)
T KOG1482         308 GVKAVHDLHIWSITVGKVALSVHLAIDSE---ADAEEVLDEARSLIKRRYGISHVTIQIEPYTEEM--------DDCLMC  376 (379)
T ss_pred             CEEEEEEEEEEEEECCCEEEEEEEEECCC---CCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCH--------HHHHHC
T ss_conf             64688888888774275578999961688---8989999999999974256589999815875532--------357643


Q ss_pred             HC
Q ss_conf             20
Q gi|254780343|r  308 LK  309 (311)
Q Consensus       308 ~~  309 (311)
                      -.
T Consensus       377 ~~  378 (379)
T KOG1482         377 QT  378 (379)
T ss_pred             CC
T ss_conf             59


No 9  
>KOG1484 consensus
Probab=100.00  E-value=2.5e-37  Score=255.71  Aligned_cols=274  Identities=18%  Similarity=0.250  Sum_probs=225.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999972799999999999999999999999999548998668724146779999896889
Q gi|254780343|r   10 IRMALWGIPISAAITALKIIAWYVTGFISLLSDGLESIVNIITAIISYFTLKYAYRPADNTHPFGHQKAEYIAAVVEGLL   89 (311)
Q Consensus        10 ~r~~~~~~~~n~~~~~~k~~~g~~t~S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~~~   89 (311)
                      .|..+..+.+|+.++..+++.|..|||..+++|++|++.|+.+.++.+++..++++|+|..|||||+|+|.++++.++++
T Consensus        34 sr~if~f~llnl~~~fv~l~y~~~snSlgLiSda~hm~FDctal~~gL~a~~is~~~~~~~fsyG~~r~evLagF~n~vf  113 (354)
T KOG1484          34 SRSIFLFLLLNLAFMFVELFYGSWSNSLGLISDAFHMFFDCTALLAGLYASVISKWPANDKFSYGYGRIEVLAGFVNGVF  113 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             15669999998999999999864367178788899999999999852457787417885556742677889999999899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH--HHCC-------------------------
Q ss_conf             9998899999999998630022322102678888720124679999987--4103-------------------------
Q gi|254780343|r   90 MTNIALIILYESWHNMSHSPSNDFSIMGLFIGFMANIISLFWGKWLIYS--GEKN-------------------------  142 (311)
Q Consensus        90 l~~~~~~i~~es~~~l~~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~~~--~~~~-------------------------  142 (311)
                      +.+.+++++.|+++|+++||+...... +.+..++.++|+.- .+.++.  +...                         
T Consensus       114 lvl~a~fi~~Es~eRl~~ppei~t~rl-lvVS~~gllvnLvG-i~aF~h~~~h~hg~~~~s~~~~h~~~~~~~~~~~~~~  191 (354)
T KOG1484         114 LVLIAFFIFSESVERLFDPPEIHTNRL-LVVSVLGLLVNLVG-ILAFSHGHAHSHGSHHHSSHSGHLALLFHSLLGVWDL  191 (354)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHCCCCEE-EEEEHHHHHHHHHH-HHHHCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCC
T ss_conf             999999976999998509154078616-87447899999989-9973134543567887653222101011000244322


Q ss_pred             -----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             -----------305778759986653788788888776530277224687668999999999989999998997404455
Q gi|254780343|r  143 -----------HSAAFKANGQHFVADVVMSAGVLCGLLLVLITEYTVLDSIIACFMACNILYQGCKVISSSIKNLMDAAV  211 (311)
Q Consensus       143 -----------~s~~l~a~~~~~~~D~~~s~~vii~~~~~~~~~~~~~D~i~ai~i~~~i~~~~~~~~~~~~~~Ll~~s~  211 (311)
                                 .+..+.....|.+.|.++|+|++++..+..++||.++||+++++|+++++.+.+|++|++.+.|++++|
T Consensus       192 ~~~~~~~i~g~~~~~m~gifLHVLaDtlgSvGviist~Li~~~gw~~aDpicsllIailIf~sv~PL~k~s~~iLLq~tP  271 (354)
T KOG1484         192 HHHAHGHIHGHSHENMPGIFLHVLADTLGSVGVIISTLLIKLFGWMIADPICSLLIAILIFLSVLPLLKYSGKILLQRTP  271 (354)
T ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             33222456773100266424999998711069999999999619611347999999999999988889988778874299


Q ss_pred             CHHH--HHHHHHHHHHCCCCCCEEEEEEEEEECCE-EEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf             5145--89999986415888311515764755790-79999999887999899999999999999987798689999605
Q gi|254780343|r  212 KPEH--LEKIKNIIALNASGSIGIHDLKIRQAGAT-FFINFHLVVDSHMIVLDAHKICNKLERSLEENIGQAIITIHIEP  288 (311)
Q Consensus       212 ~~~~--~~~i~~~i~~~~~~V~~v~~l~~~~~G~~-~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~~~~~~v~ih~ep  288 (311)
                      |...  .++..+.+ ...+||.++.+-|.|+.+++ ...++|+.|..+.+   -+.+..++.+.+... ++.+.|||+|.
T Consensus       272 p~~~~~l~~cl~~I-s~~~gV~~v~~~hFWt~~~g~~vGtlhl~V~~dad---e~~vl~~V~~~~~~~-gV~~ltvQv~~  346 (354)
T KOG1484         272 PHLENSLKQCLRQI-STLDGVTSVQNPHFWTLESGSVVGTLHLQVSSDAD---EQSVLAHVTRKLEDA-GVKDLTVQVEK  346 (354)
T ss_pred             CCHHHHHHHHHHHH-HCCCCHHHHCCCCEEECCCCCEEEEEEEEEECCCC---HHHHHHHHHHHHHHC-CEEEEEEEEEC
T ss_conf             11165899999986-45444433046742441388447899999846863---678999999888763-64389999952


Q ss_pred             CC
Q ss_conf             88
Q gi|254780343|r  289 AN  290 (311)
Q Consensus       289 ~~  290 (311)
                      .+
T Consensus       347 ~~  348 (354)
T KOG1484         347 EN  348 (354)
T ss_pred             CC
T ss_conf             42


No 10 
>KOG1483 consensus
Probab=100.00  E-value=6.7e-38  Score=259.33  Aligned_cols=273  Identities=22%  Similarity=0.359  Sum_probs=233.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999972799999999999999999999999999548998668724146779999896889999
Q gi|254780343|r   13 ALWGIPISAAITALKIIAWYVTGFISLLSDGLESIVNIITAIISYFTLKYAYRPADNTHPFGHQKAEYIAAVVEGLLMTN   92 (311)
Q Consensus        13 ~~~~~~~n~~~~~~k~~~g~~t~S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~~~l~~   92 (311)
                      .+.-+++.+++++++++.|+.++|+||++|++|++.|+++.++++++.|.+++.|++++||||.|.|.++++++++++..
T Consensus        11 li~~l~ltiiFfvLEli~gyv~~sLaLiadSfHML~dIiaLivaf~~ik~a~~~~~~k~tyGw~rAEilGalvN~ifl~a   90 (404)
T KOG1483          11 LISVLVLTIIFFVLELITGYVTNSLALIADSFHMLNDIIALIVAFWAIKEAKRIPLQKYTYGWARAEILGALVNAIFLTA   90 (404)
T ss_pred             EEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             56348888988774130020242177774578899999999999999876412761004863439999865558899999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH---------------------------------
Q ss_conf             88999999999986300223221026788887201246799999874---------------------------------
Q gi|254780343|r   93 IALIILYESWHNMSHSPSNDFSIMGLFIGFMANIISLFWGKWLIYSG---------------------------------  139 (311)
Q Consensus        93 ~~~~i~~es~~~l~~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~~~~---------------------------------  139 (311)
                      ..+.+..|+++|+++|+..+.+...+.+++++++.|.+-.......+                                 
T Consensus        91 lc~~I~~EA~~R~I~p~~i~~P~~vL~vgi~gLi~Nvlg~~lfhdhg~~h~~~~H~h~hg~~~~~~~~~~~~~~~~~~G~  170 (404)
T KOG1483          91 LCVSILIEAIERIIEPHHIENPILVLYVGIIGLISNVLGLFLFHDHGHDHGHGVHGHSHGGMKGFIGLNLTHLHSHAIGC  170 (404)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHCCCC
T ss_conf             99999999998641776566850100256999999987765242157666776778887763452133104874010477


Q ss_pred             ---------------------------------------------------HCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             ---------------------------------------------------10330577875998665378878888877
Q gi|254780343|r  140 ---------------------------------------------------EKNHSAAFKANGQHFVADVVMSAGVLCGL  168 (311)
Q Consensus       140 ---------------------------------------------------~~~~s~~l~a~~~~~~~D~~~s~~vii~~  168 (311)
                                                                         ++..+.+++..++|.+.|++.+++|+++.
T Consensus       171 ~t~~~~~d~~~~~~p~~~l~~~~~~N~~~~s~pv~~~~S~~r~~~~~~~~e~~~~~lnmhGv~LhvL~Dalg~I~Vi~~A  250 (404)
T KOG1483         171 NTLAKQLDTPLGPGPNAHLSGVMSQNLDGSSTPVQNHGSLSRDDAREKTEEKLDRNLNMHGVFLHVLGDALGSIIVIVSA  250 (404)
T ss_pred             CCHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCEEEEEEE
T ss_conf             50000135689875155505642237788777531577544463033212322024100350234303244663789988


Q ss_pred             HHHHCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEE-CCE
Q ss_conf             653027722---4687668999999999989999998997404455514589999986415888311515764755-790
Q gi|254780343|r  169 LLVLITEYT---VLDSIIACFMACNILYQGCKVISSSIKNLMDAAVKPEHLEKIKNIIALNASGSIGIHDLKIRQA-GAT  244 (311)
Q Consensus       169 ~~~~~~~~~---~~D~i~ai~i~~~i~~~~~~~~~~~~~~Ll~~s~~~~~~~~i~~~i~~~~~~V~~v~~l~~~~~-G~~  244 (311)
                      ++.|+++|.   |+||+.+++++.+|+++++++.|++...|++.+|...+.+.+++.+ ..+|||.++||+|+|+. |+.
T Consensus       251 ~~v~~t~~~~~~y~DP~lsi~~~~ii~~sa~pl~k~s~liLLq~~P~~i~ld~v~~~l-~~~~gv~~vh~lhvWqL~~~r  329 (404)
T KOG1483         251 LFVYKTEYSWAYYLDPILSIVLTVIILFSAYPLLKESALILLQTTPGSIDLDIVEKDL-LTVPGVISVHDLHVWQLAGSR  329 (404)
T ss_pred             EEEEECCEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH-HCCCCEEEEEEEEEEEECCCE
T ss_conf             9999622031555073699999999997006888899999987487753099999887-357653665534320113646


Q ss_pred             EEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf             7999999988799989999999999999998779868999960588
Q gi|254780343|r  245 FFINFHLVVDSHMIVLDAHKICNKLERSLEENIGQAIITIHIEPAN  290 (311)
Q Consensus       245 ~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~~~~~~v~ih~ep~~  290 (311)
                      +.+++||.++.-   .+--+++++++..++++ ++..+|||.|-++
T Consensus       330 ~IAt~Hi~~~~p---~~~~~~a~~ir~~fh~~-GIhs~TiqPeF~~  371 (404)
T KOG1483         330 IIATIHIQIQNP---KEYMKIAEKIRSYFHDQ-GIHSTTIQPEFAP  371 (404)
T ss_pred             EEEEEEEEECCC---HHHHHHHHHHHHHHHHC-CCCCEEECCCHHH
T ss_conf             899999983292---78899999999998855-8753134542021


No 11 
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=99.98  E-value=1.7e-30  Score=212.35  Aligned_cols=277  Identities=14%  Similarity=0.187  Sum_probs=240.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999997279999999999999999999999999954-89986687241467799998968
Q gi|254780343|r    9 MIRMALWGIPISAAITALKIIAWYVTGFISLLSDGLESIVNIITAIISYFTLKYAY-RPADNTHPFGHQKAEYIAAVVEG   87 (311)
Q Consensus         9 ~~r~~~~~~~~n~~~~~~k~~~g~~t~S~allada~~s~~D~~~~~~~l~~~~~s~-k~~d~~~pyG~~r~E~l~~l~~~   87 (311)
                      ..+....++...+++++..+++|+++||.++.-|+++|+.|.....+++...|+.. +|.|.|||||++.+||+.-.++|
T Consensus        18 eq~~L~~Si~~tvi~A~~GIi~GL~~gS~~IiFDGvYSl~da~mtllsL~vsrli~~~p~~~RF~~GfwhlEplvL~ing   97 (314)
T COG3965          18 EQLYLRISIAGTVIFAAFGIIWGLLSGSMSIIFDGVYSLIDAGMTLLSLLVSRLIAKDPRDARFPYGFWHLEPLVLAING   97 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf             78999999999999999999999982665888601899999999999999999960499756567650100005764212


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89999889999999999863002232210267888872012467999998741033057787599866537887888887
Q gi|254780343|r   88 LLMTNIALIILYESWHNMSHSPSNDFSIMGLFIGFMANIISLFWGKWLIYSGEKNHSAAFKANGQHFVADVVMSAGVLCG  167 (311)
Q Consensus        88 ~~l~~~~~~i~~es~~~l~~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vii~  167 (311)
                      .++.+.+.+.++.++..++.+.......+++.+++++...|..+++...|.+|+.+|+-+.++.+.|+-|...|.+++++
T Consensus        98 ~ll~ll~lyAlinAl~~l~dGGR~v~~~~ai~yt~~s~~~Ca~~~~~~~r~nrr~~s~lIald~kqW~Mst~lS~al~Va  177 (314)
T COG3965          98 TLLALLCLYALINALGSLLDGGREVEPGHAIAYTLVSVTGCAAIAWKLRRLNRRLKSPLIALDTKQWLMSTCLSAALFVA  177 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             89999999999999999863983214028899999999999999999976500378840015888999998899999999


Q ss_pred             HHHHHC---CCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH--CCCCCCEEEEEEE
Q ss_conf             765302---772----2468766899999999998999999899740445551458999998641--5888311515764
Q gi|254780343|r  168 LLLVLI---TEY----TVLDSIIACFMACNILYQGCKVISSSIKNLMDAAVKPEHLEKIKNIIAL--NASGSIGIHDLKI  238 (311)
Q Consensus       168 ~~~~~~---~~~----~~~D~i~ai~i~~~i~~~~~~~~~~~~~~Ll~~s~~~~~~~~i~~~i~~--~~~~V~~v~~l~~  238 (311)
                      .+..+.   |.|    +|.||.+-.+.+++++..+.+.++.+.++.+..+|+ +..+.++.....  +..+..+. +..+
T Consensus       178 F~~a~~l~~T~~a~l~~Y~DPmvlaL~~~v~IplPlg~vk~al~eiLlmtP~-el~q~ies~~~~~v~k~~f~~~-~~yv  255 (314)
T COG3965         178 FAAAWLLAGTKFAHLVVYADPMVLALVCLVFIPLPLGTVKSALREILLMTPN-ELQQSIESHAHEIVEKYGFPSY-HVYV  255 (314)
T ss_pred             HHHHHHHCCCCHHHHHCCCCHHHHHHHHHHEEECCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHCCCHH-HHHH
T ss_conf             9999986468422530014789999997824624487899999999951937-8899999999999998658527-8899


Q ss_pred             EEECCEEEEEEEEEECCCC---CHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf             7557907999999988799---989999999999999998779868999960
Q gi|254780343|r  239 RQAGATFFINFHLVVDSHM---IVLDAHKICNKLERSLEENIGQAIITIHIE  287 (311)
Q Consensus       239 ~~~G~~~~v~~~i~v~~~~---~~~eah~i~~~ie~~l~~~~~~~~v~ih~e  287 (311)
                      -+.|...++|+|..+|++.   .+++.++|+|++.+.|.+.-+...+||-+-
T Consensus       256 ArVGr~l~IEi~fiip~~~~ar~Ved~d~Irdei~~slg~~g~~rwltvsfT  307 (314)
T COG3965         256 ARVGRGLFIEIHFIIPRESDARNVEDWDDIRDEIGQSLGSLGYERWLTVSFT  307 (314)
T ss_pred             HHHCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEE
T ss_conf             9846622899999827766874633689999999888634786743899985


No 12 
>KOG2802 consensus
Probab=99.91  E-value=1.6e-23  Score=168.15  Aligned_cols=184  Identities=16%  Similarity=0.230  Sum_probs=146.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999727999999999999999999999999995489986687241467799998968899
Q gi|254780343|r   11 RMALWGIPISAAITALKIIAWYVTGFISLLSDGLESIVNIITAIISYFTLKYAYRPADNTHPFGHQKAEYIAAVVEGLLM   90 (311)
Q Consensus        11 r~~~~~~~~n~~~~~~k~~~g~~t~S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~~~l   90 (311)
                      |..-.++++|..-+..||.+|++|||.+|+|+++||+.|..++++..++++.|.|.||..|||||.+..+++++++|+-+
T Consensus       207 rvVatAi~iN~l~~~~Kfg~w~~tgShsmfAEaIHS~aD~~NQ~lLa~Gis~S~q~PD~lhPYGYsnmRyVsSLISgvGI  286 (503)
T KOG2802         207 RVVATAICINGLNCFFKFGAWIYTGSHSMFAEAIHSLADTCNQLLLALGISKSVQTPDPLHPYGYSNMRYVSSLISGVGI  286 (503)
T ss_pred             CEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCE
T ss_conf             26516888878999998657654266789999999999999899999602430469998787765306679999732442


Q ss_pred             HHHHH-HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH---HHHHHHHHHHHHHCCCCHHHHHHHHH---------HHHH
Q ss_conf             99889-99999999986300223221026788887201---24679999987410330577875998---------6653
Q gi|254780343|r   91 TNIAL-IILYESWHNMSHSPSNDFSIMGLFIGFMANII---SLFWGKWLIYSGEKNHSAAFKANGQH---------FVAD  157 (311)
Q Consensus        91 ~~~~~-~i~~es~~~l~~~~~~~~~~~~~~i~~~~~~v---~~~~~~~~~~~~~~~~s~~l~a~~~~---------~~~D  157 (311)
                      +.+|. ..+|.+++.++||++++...|+..+...+++.   .++.+....+.+.+.++..++-.-+.         .+.|
T Consensus       287 fc~G~GlSiyhGv~gLlhpePi~~l~~ay~il~gSl~~eGasllvAi~evkr~Ak~~gmSi~dYV~~~~DPs~nvVl~ED  366 (503)
T KOG2802         287 FCMGCGLSIYHGVMGLLHPEPIESLLWAYCILAGSLVSEGASLLVAINEVKRNAKAKGMSIYDYVMESRDPSTNVVLLED  366 (503)
T ss_pred             EEECCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCEEEEECC
T ss_conf             66426604333002346899995068999999667885433999999999987887498798987606898623899434


Q ss_pred             HHHHHHHHHH---HHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             7887888887---765302772246876689999999999
Q gi|254780343|r  158 VVMSAGVLCG---LLLVLITEYTVLDSIIACFMACNILYQ  194 (311)
Q Consensus       158 ~~~s~~vii~---~~~~~~~~~~~~D~i~ai~i~~~i~~~  194 (311)
                      ..+-.|+.++   +.+..++|.|..|++++++++.++-..
T Consensus       367 tAAVtGv~IAaa~m~lss~tgnPIyD~~GSivvGaLLGmV  406 (503)
T KOG2802         367 TAAVTGVIIAAACMGLSSITGNPIYDSLGSIVVGALLGMV  406 (503)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf             1788889999998888872189786542037898888777


No 13 
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=98.40  E-value=8e-06  Score=55.89  Aligned_cols=88  Identities=19%  Similarity=0.195  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999997279999999999999999999999999954899866872414677999989688999
Q gi|254780343|r   12 MALWGIPISAAITALKIIAWYVTGFISLLSDGLESIVNIITAIISYFTLKYAYRPADNTHPFGHQKAEYIAAVVEGLLMT   91 (311)
Q Consensus        12 ~~~~~~~~n~~~~~~k~~~g~~t~S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~~~l~   91 (311)
                      .++.++.+|..+.-.+.-.|--+||.+|.||+.|...|.++++.+++++- ...       +|+.-++++++++.++.++
T Consensus       122 v~l~s~~~~~~l~~~~~~~~kk~~S~aL~Ada~h~~sD~~ts~~~lvgl~-~~~-------~g~~~lD~i~a~~I~~~Il  193 (304)
T COG0053         122 VALISIVIKEALYRYLRRVGKKTNSQALIADALHHRSDVLTSLAVLVGLL-GSL-------LGWPWLDPLAALLISLYIL  193 (304)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-------HCHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999982889889656888729999999999999-999-------2839898999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             9889999999999863
Q gi|254780343|r   92 NIALIILYESWHNMSH  107 (311)
Q Consensus        92 ~~~~~i~~es~~~l~~  107 (311)
                      ..|+.++++++..+..
T Consensus       194 ~~~~~~~~~s~~~L~d  209 (304)
T COG0053         194 KTGFRLFKESVNELMD  209 (304)
T ss_pred             HHHHHHHHHHHHHHHC
T ss_conf             9999999999999847


No 14 
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=98.34  E-value=1.3e-05  Score=54.62  Aligned_cols=87  Identities=15%  Similarity=0.004  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             887201246799999874103305778759986653788788888776530-------2772246876689999999999
Q gi|254780343|r  122 FMANIISLFWGKWLIYSGEKNHSAAFKANGQHFVADVVMSAGVLCGLLLVL-------ITEYTVLDSIIACFMACNILYQ  194 (311)
Q Consensus       122 ~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vii~~~~~~-------~~~~~~~D~i~ai~i~~~i~~~  194 (311)
                      .+++++|.++...+...+--.+|.++.|++.|++.|..+++.++++.-...       -+|+.-+.++++++++++++..
T Consensus        14 ~~si~~n~~L~i~K~~~g~~sgS~AllADa~hSl~D~~s~~~~l~~~~~s~kp~d~~hPyGhgR~E~l~al~~~i~i~~~   93 (300)
T PRK09509         14 IAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIAASLTNLLVVRYSLQPADDEHTFGHGKAESLAALAQSMFISGS   93 (300)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999450999998999999999999999999996599977799708789999999999999999


Q ss_pred             HHHHHHHHHHHHHC
Q ss_conf             89999998997404
Q gi|254780343|r  195 GCKVISSSIKNLMD  208 (311)
Q Consensus       195 ~~~~~~~~~~~Ll~  208 (311)
                      ++.++.+++..|+.
T Consensus        94 ~~~i~~esi~~l~~  107 (300)
T PRK09509         94 ALFLFLTGIQHLIS  107 (300)
T ss_pred             HHHHHHHHHHHHCC
T ss_conf             99999999998469


No 15 
>PRK03557 zinc transporter ZitB; Provisional
Probab=97.77  E-value=0.00055  Score=44.28  Aligned_cols=72  Identities=15%  Similarity=0.128  Sum_probs=37.8

Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             874103305778759986653788788888776530-------277224687668999999999989999998997404
Q gi|254780343|r  137 YSGEKNHSAAFKANGQHFVADVVMSAGVLCGLLLVL-------ITEYTVLDSIIACFMACNILYQGCKVISSSIKNLMD  208 (311)
Q Consensus       137 ~~~~~~~s~~l~a~~~~~~~D~~~s~~vii~~~~~~-------~~~~~~~D~i~ai~i~~~i~~~~~~~~~~~~~~Ll~  208 (311)
                      -.|--.+|.+|.||+.|.++|+++.+..+++.-...       -+||.-++.+++++.+++++..++.++.|++..+..
T Consensus        37 i~G~~s~SlALlaDa~H~l~D~~~~~i~l~a~~~a~kp~d~~~tyG~~R~E~laAl~~~i~L~~~~~~i~~eai~rl~~  115 (312)
T PRK03557         37 VGGFLSGSLALLADAGHMLTDAAALLFALLAVQFSRRPPTIRHTFGWLRLTTLAAFVNAIALVVITILIVWEAIERFRT  115 (312)
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             9999841499999999999899999999999999758998657853999999999999999999999999999998479


No 16 
>pfam01545 Cation_efflux Cation efflux family. Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are thought to be efflux pumps that remove these ions from cells.
Probab=97.30  E-value=0.01  Score=36.13  Aligned_cols=67  Identities=21%  Similarity=0.274  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             79999999999999999999999999954899866872414677999989688999988999999999986300
Q gi|254780343|r   36 FISLLSDGLESIVNIITAIISYFTLKYAYRPADNTHPFGHQKAEYIAAVVEGLLMTNIALIILYESWHNMSHSP  109 (311)
Q Consensus        36 S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~i~~es~~~l~~~~  109 (311)
                      |..+.+++.|...|.++++..+++.-.+..-       |+..++++++++.+++++..++.+++++...+....
T Consensus       124 s~~l~a~~~~~~~D~~~s~~~~~~~~~~~~~-------~~~~~D~i~~iii~~~ii~~~~~~~~~s~~~Ll~~~  190 (273)
T pfam01545       124 SPALRADALHALVDVLGSLAVLIGLLLILLT-------GLYIADPLASLLIALLILYTGLRLLKESLSELLGAS  190 (273)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             9899999999999999998999999999971-------967777899999999999999999999999996779


No 17 
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=97.23  E-value=0.0071  Score=37.19  Aligned_cols=86  Identities=19%  Similarity=0.199  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             01246799999874103305778759986653788788888776530-------27722468766899999999998999
Q gi|254780343|r  126 IISLFWGKWLIYSGEKNHSAAFKANGQHFVADVVMSAGVLCGLLLVL-------ITEYTVLDSIIACFMACNILYQGCKV  198 (311)
Q Consensus       126 ~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vii~~~~~~-------~~~~~~~D~i~ai~i~~~i~~~~~~~  198 (311)
                      +++..++....-.|-..+|.++.||++|.++|+++-...+++..+..       .+||+.+.-+++++-+++++..+.-+
T Consensus        29 ~L~~~f~~iE~i~g~~s~SlaLLADa~Hml~D~~al~lal~A~~~a~r~~~~~~TfGy~R~eiLaa~~nav~Li~~s~~I  108 (296)
T COG1230          29 LLNLAFMLIEIIGGLLTGSLALLADALHMLSDALALLLALIAIKLARRPATKRFTFGYKRLEILAAFLNALLLIVVSLLI  108 (296)
T ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999996569999737778899999999999999841777787773076899999999999999999999


Q ss_pred             HHHHHHHHHCCCC
Q ss_conf             9998997404455
Q gi|254780343|r  199 ISSSIKNLMDAAV  211 (311)
Q Consensus       199 ~~~~~~~Ll~~s~  211 (311)
                      ++|+...+..-.+
T Consensus       109 ~~EAi~R~~~P~~  121 (296)
T COG1230         109 LWEAIQRLLAPPP  121 (296)
T ss_pred             HHHHHHHHCCCCC
T ss_conf             9999999648888


No 18 
>KOG1485 consensus
Probab=97.18  E-value=0.0079  Score=36.90  Aligned_cols=91  Identities=12%  Similarity=0.055  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHH
Q ss_conf             67888872012467999998741033057787599866537887888887765302-------77224687668999999
Q gi|254780343|r  118 LFIGFMANIISLFWGKWLIYSGEKNHSAAFKANGQHFVADVVMSAGVLCGLLLVLI-------TEYTVLDSIIACFMACN  190 (311)
Q Consensus       118 ~~i~~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vii~~~~~~~-------~~~~~~D~i~ai~i~~~  190 (311)
                      ..+.-+++.+|..++.-+...+--.+|.++.|++.|.+.|.++++...++.....-       -|..-..|++.+.++.+
T Consensus       114 ~~~~~i~l~~Nigl~vaK~~as~~sgS~aIiAsavdSl~Dl~s~fvll~s~~~~~k~~~~~YP~G~~r~EtvG~i~~S~i  193 (412)
T KOG1485         114 RRAAWIGLAANIGLAVAKVVASYLSGSMAIIASAVDSLSDLVSGFVLLFSLRAAKKKPTYEYPRGRGRVETVGLIAVSVI  193 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCHHHHHHHHH
T ss_conf             99999999999999999998888412099999899999999999999999998638982118898775200129999999


Q ss_pred             HHHHHHHHHHHHHHHHHC
Q ss_conf             999989999998997404
Q gi|254780343|r  191 ILYQGCKVISSSIKNLMD  208 (311)
Q Consensus       191 i~~~~~~~~~~~~~~Ll~  208 (311)
                      |...+..+.+++.+.+.+
T Consensus       194 Ma~agv~ii~sSl~~i~~  211 (412)
T KOG1485         194 MAMAGVQIIWSSLRLIVG  211 (412)
T ss_pred             HHHHHHHHHHHHHHHHHC
T ss_conf             999988999986786514


No 19 
>TIGR01297 CDF cation diffusion facilitator family transporter; InterPro: IPR002524   Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells , , however others are implicated in ion uptake . The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0016020 membrane.
Probab=96.30  E-value=0.085  Score=30.37  Aligned_cols=96  Identities=20%  Similarity=0.206  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHH--HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             99999999999999999999--99972--799999999999999999999999999548998668724146779999896
Q gi|254780343|r   11 RMALWGIPISAAITALKIIA--WYVTG--FISLLSDGLESIVNIITAIISYFTLKYAYRPADNTHPFGHQKAEYIAAVVE   86 (311)
Q Consensus        11 r~~~~~~~~n~~~~~~k~~~--g~~t~--S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~   86 (311)
                      -.+..++..|........-.  |.-.+  |.++.++..|...|..++...+.+.......|     ||+.-.+++.+++.
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~d~~~~~~~  186 (294)
T TIGR01297       112 IVAGLGLLVNLILALLLLRGHGGHKLGHGSLNLRAAALHVLGDLLGSLGVLIGALLIYFGP-----FGWTWADPIAALLI  186 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHH
T ss_conf             9999999999999999986420221100147899999998888899999999999987402-----55037778999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             8899998899999999998630022
Q gi|254780343|r   87 GLLMTNIALIILYESWHNMSHSPSN  111 (311)
Q Consensus        87 ~~~l~~~~~~i~~es~~~l~~~~~~  111 (311)
                      ++.++..+..++.+++..+....++
T Consensus       187 ~~~~~~~~~~~~~~~~~~l~~~~~~  211 (294)
T TIGR01297       187 SLLILYTAFRLLKESINVLLDGAPP  211 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             9999998999999999998510353


No 20 
>KOG1484 consensus
Probab=95.21  E-value=0.23  Score=27.60  Aligned_cols=88  Identities=14%  Similarity=0.197  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHHHHHH
Q ss_conf             88720124679999987410330577875998665378878888877653027-------72246876689999999999
Q gi|254780343|r  122 FMANIISLFWGKWLIYSGEKNHSAAFKANGQHFVADVVMSAGVLCGLLLVLIT-------EYTVLDSIIACFMACNILYQ  194 (311)
Q Consensus       122 ~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vii~~~~~~~~-------~~~~~D~i~ai~i~~~i~~~  194 (311)
                      +...++|..+.......+-..+|..+.++++|...|..+..+-+.+..+...+       |+..+..+++..-+++....
T Consensus        38 f~f~llnl~~~fv~l~y~~~snSlgLiSda~hm~FDctal~~gL~a~~is~~~~~~~fsyG~~r~evLagF~n~vflvl~  117 (354)
T KOG1484          38 FLFLLLNLAFMFVELFYGSWSNSLGLISDAFHMFFDCTALLAGLYASVISKWPANDKFSYGYGRIEVLAGFVNGVFLVLI  117 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             99999989999999998643671787888999999999998524577874178855567426778899999998999999


Q ss_pred             HHHHHHHHHHHHHCC
Q ss_conf             899999989974044
Q gi|254780343|r  195 GCKVISSSIKNLMDA  209 (311)
Q Consensus       195 ~~~~~~~~~~~Ll~~  209 (311)
                      ++.++.|++..|++-
T Consensus       118 a~fi~~Es~eRl~~p  132 (354)
T KOG1484         118 AFFIFSESVERLFDP  132 (354)
T ss_pred             HHHHHHHHHHHHCCC
T ss_conf             999769999985091


No 21 
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=93.93  E-value=0.46  Score=25.71  Aligned_cols=145  Identities=14%  Similarity=0.237  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHH
Q ss_conf             6788887201246799999874103305778759986653788788888776530-------277224687668999999
Q gi|254780343|r  118 LFIGFMANIISLFWGKWLIYSGEKNHSAAFKANGQHFVADVVMSAGVLCGLLLVL-------ITEYTVLDSIIACFMACN  190 (311)
Q Consensus       118 ~~i~~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vii~~~~~~-------~~~~~~~D~i~ai~i~~~  190 (311)
                      +..+++..++..+...+..+..++.++...+...-..   .+.++|.++|++++.       ..+.|++-++.+++++++
T Consensus        45 ligai~~~li~~~~~~~~~~~~~~le~~i~k~~~~~i---lf~tiGLiiGLlia~l~~~pL~~~~ip~~~~ii~vi~t~i  121 (356)
T COG4956          45 LIGAIIFFLISFWFGKYVLNWLKRLEEQIRKLPVTTI---LFGTIGLIIGLLIAVLLSSPLFLLPIPFISTIIPVILTII  121 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999999983689999---9987889999999999853776279607776899999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHH-HHHHHCCCCCCEEEEEEEE------EECCEEEEEEEEEECCCCCHHHHH
Q ss_conf             999989999998997404455514589999-9864158883115157647------557907999999988799989999
Q gi|254780343|r  191 ILYQGCKVISSSIKNLMDAAVKPEHLEKIK-NIIALNASGSIGIHDLKIR------QAGATFFINFHLVVDSHMIVLDAH  263 (311)
Q Consensus       191 i~~~~~~~~~~~~~~Ll~~s~~~~~~~~i~-~~i~~~~~~V~~v~~l~~~------~~G~~~~v~~~i~v~~~~~~~eah  263 (311)
                      +.|.|+...-....+++--..+..-..+.+ +.-+.. |.-..+-|-.+-      ..-..-|+|-.+.+| ..-+.|..
T Consensus       122 l~y~G~~~~~k~~de~~~l~~~~~~~~m~~~~~~~~k-~~~~KILDTSvIIDGRI~di~~TGFleG~iiiP-~FVL~ELQ  199 (356)
T COG4956         122 LAYFGFQLADKKRDEFLRLLNPNRREAMKKEEEGEVK-PKKPKILDTSVIIDGRIADILQTGFLEGTIIIP-QFVLLELQ  199 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC-CCCCEEEEECEEECCHHHHHHHHCCCCCEEEEE-HHHHHHHH
T ss_conf             9997367764014889875054457775455541336-899767420237721399999718736617641-79999999


Q ss_pred             HHHH
Q ss_conf             9999
Q gi|254780343|r  264 KICN  267 (311)
Q Consensus       264 ~i~~  267 (311)
                      .++|
T Consensus       200 ~iAD  203 (356)
T COG4956         200 HIAD  203 (356)
T ss_pred             HHHH
T ss_conf             8760


No 22 
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=93.23  E-value=0.61  Score=24.96  Aligned_cols=112  Identities=9%  Similarity=0.092  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-
Q ss_conf             896889999889999999999863002232210267-888872012467999998741033057787599866537887-
Q gi|254780343|r   84 VVEGLLMTNIALIILYESWHNMSHSPSNDFSIMGLF-IGFMANIISLFWGKWLIYSGEKNHSAAFKANGQHFVADVVMS-  161 (311)
Q Consensus        84 l~~~~~l~~~~~~i~~es~~~l~~~~~~~~~~~~~~-i~~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s-  161 (311)
                      +.--..+++.|++.+..++..+++......+.+.+. .++++...++.+++|.++... .+|  .+.-.|-.+.-+..| 
T Consensus        96 m~lDssLl~lg~~aLlsgitaff~~nA~~~GlItlll~a~vgGfamy~my~y~yr~~a-d~s--qr~~~~K~~lv~~~sm  172 (226)
T COG4858          96 MWLDSSLLFLGAMALLSGITAFFQKNAQVYGLITLLLTAVVGGFAMYIMYYYAYRMRA-DNS--QRPGTWKYLLVAVLSM  172 (226)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCC--CCCCHHHHHHHHHHHH
T ss_conf             8863629999999999999999962883021799999998666999999999987624-345--5884199999999999


Q ss_pred             ---HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             ---8888877653027722468766899999999998999
Q gi|254780343|r  162 ---AGVLCGLLLVLITEYTVLDSIIACFMACNILYQGCKV  198 (311)
Q Consensus       162 ---~~vii~~~~~~~~~~~~~D~i~ai~i~~~i~~~~~~~  198 (311)
                         +++.++..+.--.-.+.+||++-.+++..++-.-|-+
T Consensus       173 ~lWi~v~i~t~~lPtslN~~L~pi~l~IiGav~lalRfyl  212 (226)
T COG4858         173 LLWIAVMIATVFLPTSLNPQLPPIALTIIGAVILALRFYL  212 (226)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999507876786786199999999999999999


No 23 
>PRK10263 DNA translocase FtsK; Provisional
Probab=85.11  E-value=2.7  Score=20.89  Aligned_cols=49  Identities=12%  Similarity=0.171  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHH--HHHHHHCCCCHHH---HHHHHHHHHHHHHHHH
Q ss_conf             78759986653788788888--7765302772246---8766899999999998
Q gi|254780343|r  147 FKANGQHFVADVVMSAGVLC--GLLLVLITEYTVL---DSIIACFMACNILYQG  195 (311)
Q Consensus       147 l~a~~~~~~~D~~~s~~vii--~~~~~~~~~~~~~---D~i~ai~i~~~i~~~~  195 (311)
                      +....+-+++-.-+++..++  +..++.||||-|+   |-+++.+++.+-+.+.
T Consensus       150 lSsa~lP~lN~lGaTL~LL~~WaaGlTLFTGwSWLtIaEkiG~~vL~~lt~~~N  203 (1355)
T PRK10263        150 LSTTLQPLLHSSGGTIALLCVWAAGLTLFTGWSWVTIAEKLGGWILNILTFASN  203 (1355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             777688766306389999999987546530551999999981899999898871


No 24 
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=82.00  E-value=3.6  Score=20.09  Aligned_cols=43  Identities=16%  Similarity=0.367  Sum_probs=29.2

Q ss_pred             HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999548998668724146779999896889999889999999999
Q gi|254780343|r   55 ISYFTLKYAYRPADNTHPFGHQKAEYIAAVVEGLLMTNIALIILYESWHN  104 (311)
Q Consensus        55 ~~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~i~~es~~~  104 (311)
                      +.+.+++.++.-.       -...|+--.+++++++..+|.++++..+..
T Consensus        70 lal~~l~~~~~~~-------~e~~~pwL~~~S~~lI~~iG~wmlwr~~r~  112 (278)
T PRK10019         70 IAFGGMVISKRFT-------AQSAEPWLQLISAVIIISTAFWMFWRTWRG  112 (278)
T ss_pred             HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999986513-------888999999999999999999999999977


No 25 
>TIGR00930 2a30 K-Cl cotransporter; InterPro: IPR004842 This is a family of K-Cl cotransporters. It includes bumetanide-sensitive sodium-(potassium)-chloride cotransporter, an electrically silent transporter system which is a mediator of sodium and chloride reabsorption. It plays a vital role in the regulation of ionic balance and cell volume. Bumetanide-sensitive sodium-(potassium)-chloride cotransporter belongs to the SLC12A family of transporters.; GO: 0015377 cation:chloride symporter activity, 0006814 sodium ion transport, 0006821 chloride transport, 0016021 integral to membrane.
Probab=77.24  E-value=5  Score=19.14  Aligned_cols=189  Identities=12%  Similarity=0.093  Sum_probs=98.4

Q ss_pred             CCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf             68724146-77999989688999988999999999986300223221026788887201246799999874103305778
Q gi|254780343|r   70 THPFGHQK-AEYIAAVVEGLLMTNIALIILYESWHNMSHSPSNDFSIMGLFIGFMANIISLFWGKWLIYSGEKNHSAAFK  148 (311)
Q Consensus        70 ~~pyG~~r-~E~l~~l~~~~~l~~~~~~i~~es~~~l~~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~~~s~~l~  148 (311)
                      -|--|||| -||+.+++...++...++.|.-  .+- +      .+.+..+......++|+.++.-     .-.+||+=|
T Consensus       537 ~F~~g~gkn~EP~~aylLT~~Ia~~filIA~--Ln~-i------APiiSnFFL~sYaliNfscF~~-----~l~~~PgWR  602 (1171)
T TIGR00930       537 FFGKGYGKNGEPLRAYLLTFFIALLFILIAE--LNT-I------APIISNFFLASYALINFSCFHA-----SLLRSPGWR  602 (1171)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC--CCC-C------CHHHHHHHHHHHHHHHHHHHHH-----HHHCCCCCC
T ss_conf             0465778788727989999999878765521--121-1------2267889999999999999999-----985288888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHCCCC
Q ss_conf             759986653788788888776530277224687668999999999-----------------989999998997404455
Q gi|254780343|r  149 ANGQHFVADVVMSAGVLCGLLLVLITEYTVLDSIIACFMACNILY-----------------QGCKVISSSIKNLMDAAV  211 (311)
Q Consensus       149 a~~~~~~~D~~~s~~vii~~~~~~~~~~~~~D~i~ai~i~~~i~~-----------------~~~~~~~~~~~~Ll~~s~  211 (311)
                      -.++ +.+=.++=+|.+++..+..+-.|++  .++++.|++++..                 ..+..++++...|-...+
T Consensus       603 P~F~-yY~~~lSl~Ga~lC~~iMFl~~W~~--alva~~i~~~lY~Yv~Yk~p~vnWGss~qa~~y~~AL~~~~~L~~~~~  679 (1171)
T TIGR00930       603 PRFR-YYNWWLSLLGAILCVAIMFLISWWA--ALVAIVIALLLYKYVEYKKPDVNWGSSTQALSYSLALSSLLRLEEVED  679 (1171)
T ss_pred             CCHH-HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf             6516-7879999999999999999999999--999999999987773211666675640789999999999972347888


Q ss_pred             CHHHHHHHHHHHH----------HCCCCCCEEEEEEEEEECCEEEEEEEEEECC-CCCHHHHHHHHHHHHHHHHHH
Q ss_conf             5145899999864----------1588831151576475579079999999887-999899999999999999987
Q gi|254780343|r  212 KPEHLEKIKNIIA----------LNASGSIGIHDLKIRQAGATFFINFHLVVDS-HMIVLDAHKICNKLERSLEEN  276 (311)
Q Consensus       212 ~~~~~~~i~~~i~----------~~~~~V~~v~~l~~~~~G~~~~v~~~i~v~~-~~~~~eah~i~~~ie~~l~~~  276 (311)
                      ......-.-=.+.          ...|.-.+.-+.-+ +-|..+.+=.||...+ ...++|+....++.++-|+++
T Consensus       680 H~KN~rPQ~LVL~g~pG~l~~~~~~rP~L~dl~~~~~-kk~~gL~I~g~v~~g~~~~~~~e~~~~~~~~~~wl~~~  754 (1171)
T TIGR00930       680 HVKNWRPQCLVLTGPPGKLEDNVVCRPALLDLASQLK-KKGKGLMIVGSVLQGPRKERVKEASAAEEKIQTWLEKR  754 (1171)
T ss_pred             CCCCCCCHHHEEECCCCCCCCCCCCCHHHHHHHHHHH-HHCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8554564332143788766411366603788999998-70696089998654760534799999999999998850


No 26 
>PRK10597 DNA damage-inducible protein I; Provisional
Probab=73.94  E-value=6.1  Score=18.60  Aligned_cols=59  Identities=12%  Similarity=0.116  Sum_probs=31.7

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCHHHHH
Q ss_conf             99999887999899999999999999987798689999605887645554888314565
Q gi|254780343|r  248 NFHLVVDSHMIVLDAHKICNKLERSLEENIGQAIITIHIEPANEVTHGIHVPLKENKNQ  306 (311)
Q Consensus       248 ~~~i~v~~~~~~~eah~i~~~ie~~l~~~~~~~~v~ih~ep~~~~~~~~~~~~~e~~~~  306 (311)
                      ++.|.=...++-.-.+.+..++.++|+++||..++.|.+-+.....-...-..++++..
T Consensus         4 Ei~idK~~~lP~ga~~AL~~EL~kRl~~~fPD~~~~V~Vr~~san~lsv~g~~k~dK~~   62 (81)
T PRK10597          4 EVTIAKTSPLPAGAIDALAGELSRRIQYAFPDNEGHVSVRYAAANNLSVIGATKEDKDR   62 (81)
T ss_pred             EEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHH
T ss_conf             99874167699765999999999986634898655068854588873036767756999


No 27 
>pfam03780 DUF322 Protein of unknown function (DUF322). This is a family of small proteins. It includes a protein identified as an alkaline shock protein so may be involved in stress response.
Probab=69.29  E-value=7.8  Score=17.94  Aligned_cols=52  Identities=17%  Similarity=0.369  Sum_probs=32.7

Q ss_pred             EEEEEE-CCEEEEEEEEEECCCCCHHH-HHHHHHHHHHHHHHHCC--CCEEEEEEE
Q ss_conf             764755-79079999999887999899-99999999999998779--868999960
Q gi|254780343|r  236 LKIRQA-GATFFINFHLVVDSHMIVLD-AHKICNKLERSLEENIG--QAIITIHIE  287 (311)
Q Consensus       236 l~~~~~-G~~~~v~~~i~v~~~~~~~e-ah~i~~~ie~~l~~~~~--~~~v~ih~e  287 (311)
                      +++... +....+++++.++...++.+ ++++.+++++.+++--+  +.++.|+++
T Consensus        50 v~V~~~~~~~v~v~l~v~v~YG~~i~~v~~~iq~~V~~~v~~mtgl~V~~VnV~V~  105 (108)
T pfam03780        50 VKVEVGEEGQVAIDLYVIVEYGVNIPEVAKNIQEKVKYAVENMTGLEVSEVNVHVQ  105 (108)
T ss_pred             CEEEECCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEE
T ss_conf             08998679869999999997799889999999999999999987986789999998


No 28 
>PRK10568 periplasmic protein; Provisional
Probab=68.59  E-value=8  Score=17.84  Aligned_cols=75  Identities=13%  Similarity=0.149  Sum_probs=46.1

Q ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHH----HHHHHHHHHHHHHHHH
Q ss_conf             989974044555145899999864158883115157647557907999999988799989----9999999999999987
Q gi|254780343|r  201 SSIKNLMDAAVKPEHLEKIKNIIALNASGSIGIHDLKIRQAGATFFINFHLVVDSHMIVL----DAHKICNKLERSLEEN  276 (311)
Q Consensus       201 ~~~~~Ll~~s~~~~~~~~i~~~i~~~~~~V~~v~~l~~~~~G~~~~v~~~i~v~~~~~~~----eah~i~~~ie~~l~~~  276 (311)
                      +..-.|.|..|++++.++..++ +..++||.+|+|            +++|.-++..++.    ++ .|..+++..|...
T Consensus        86 ~G~VlLsG~V~s~~~k~~A~~i-A~~V~GV~~V~N------------eL~V~~~~~~s~~~~a~D~-~ITtkvKa~Ll~d  151 (203)
T PRK10568         86 QKVVTLSGFVESQAQAEEAVKV-AKGVEGVTSVSD------------KLHVRDAKEGSVKGYAGDT-ATTSEIKAKLLAD  151 (203)
T ss_pred             CCEEEEEEECCCHHHHHHHHHH-HHCCCCCEEEEE------------EEEECCCCCCCCCCCCCHH-HHHHHHHHHHHCC
T ss_conf             5889997406999999999999-852898238876------------6897058886501236509-9999999986317


Q ss_pred             CCCCEEEEEEECC
Q ss_conf             7986899996058
Q gi|254780343|r  277 IGQAIITIHIEPA  289 (311)
Q Consensus       277 ~~~~~v~ih~ep~  289 (311)
                      -.+.-..|.++..
T Consensus       152 ~~v~s~~i~V~T~  164 (203)
T PRK10568        152 DIVPSRKVKVETT  164 (203)
T ss_pred             CCCCCEEEEEEEE
T ss_conf             8877258899996


No 29 
>pfam09580 Spore_YhcN_YlaJ Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ). This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=68.06  E-value=8.2  Score=17.77  Aligned_cols=67  Identities=10%  Similarity=0.141  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCC-CCEEEEEEECC
Q ss_conf             899999864158883115157647557907999999988799989999999999999998779-86899996058
Q gi|254780343|r  216 LEKIKNIIALNASGSIGIHDLKIRQAGATFFINFHLVVDSHMIVLDAHKICNKLERSLEENIG-QAIITIHIEPA  289 (311)
Q Consensus       216 ~~~i~~~i~~~~~~V~~v~~l~~~~~G~~~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~~~-~~~v~ih~ep~  289 (311)
                      -++|.+.+ ...|   +|.+..+--.|...+|-+++.  .. .-....++.+++++.+++..| ..++.|--||-
T Consensus        68 A~~i~~~~-~~~~---~V~dA~vvVt~~~a~V~v~~~--~~-~~~~~~~ik~~V~~~v~~~~p~~~~VyVs~D~d  135 (169)
T pfam09580        68 ADKIARRV-AKLP---EVEDAAVVVTGEEALVAVDLD--NG-ERSLTEEIKKQVKKAVKSVDPRIYNVYVSADPD  135 (169)
T ss_pred             HHHHHHHH-HCCC---CCCEEEEEEECCEEEEEEECC--CC-CHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHH
T ss_conf             99999999-6178---864468999899799999738--86-403589999999999984088865699966989


No 30 
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]
Probab=67.00  E-value=8.6  Score=17.64  Aligned_cols=68  Identities=19%  Similarity=0.180  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHHHHH---------HHH-HHHHHHHH--HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99727999999999999---------999-99999999--9995489986687241467799998968899998899999
Q gi|254780343|r   32 YVTGFISLLSDGLESIV---------NII-TAIISYFT--LKYAYRPADNTHPFGHQKAEYIAAVVEGLLMTNIALIILY   99 (311)
Q Consensus        32 ~~t~S~allada~~s~~---------D~~-~~~~~l~~--~~~s~k~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~i~~   99 (311)
                      -.||--||-||.-|---         =++ +.++.++|  ..+-+.|...+.||  ...-|=+++.--+++...+..+..
T Consensus       229 avTGaEALYADmGHfGr~pI~~AWf~vv~P~L~LNY~GQGA~vL~np~a~~npF--F~~~P~~aliP~viLAT~ATVIAS  306 (627)
T COG3158         229 AVTGAEALYADMGHFGRKPIRVAWFFVVLPCLLLNYFGQGALLLSNPEAIGNPF--FLLAPDWALIPLVILATAATVIAS  306 (627)
T ss_pred             EECCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCH--HHHCHHHHHHHHHHHHHHHHHHHH
T ss_conf             205599987401466774388989999999999977354011015842014847--883814289899999999999998


Q ss_pred             HH
Q ss_conf             99
Q gi|254780343|r  100 ES  101 (311)
Q Consensus       100 es  101 (311)
                      ++
T Consensus       307 QA  308 (627)
T COG3158         307 QA  308 (627)
T ss_pred             HH
T ss_conf             88


No 31 
>pfam00873 ACR_tran AcrB/AcrD/AcrF family. Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein, AcrA, and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer.
Probab=65.42  E-value=9.3  Score=17.45  Aligned_cols=64  Identities=11%  Similarity=0.093  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHCCCCCCEEEEEEEEEEC----CEEEEEEEEEECCC----CCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             5899999864158883115157647557----90799999998879----998999999999999999877986
Q gi|254780343|r  215 HLEKIKNIIALNASGSIGIHDLKIRQAG----ATFFINFHLVVDSH----MIVLDAHKICNKLERSLEENIGQA  280 (311)
Q Consensus       215 ~~~~i~~~i~~~~~~V~~v~~l~~~~~G----~~~~v~~~i~v~~~----~~~~eah~i~~~ie~~l~~~~~~~  280 (311)
                      ..+++++.+ ++.|+|.++...-.+..+    +....+..+.+.+.    .+-....++.+++++.+.+ +|..
T Consensus       579 ~~~~ie~~l-~~~~~v~~v~~~iG~~~~~~~~~~~~~~~~v~L~~~~~r~~~~~~~~~i~~~~r~~l~~-~pg~  650 (1021)
T pfam00873       579 VLKQVEKIL-KEKPEVESVFAVTGFAFAGDNNGPNSGDVFITLKPWKERPGPEQTVEAIIERLRKALAK-IPGA  650 (1021)
T ss_pred             HHHHHHHHH-HCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEECCHHHCCCCCCCHHHHHHHHHHHHHC-CCCC
T ss_conf             999999998-54999369999965567788888640699999736898588545799999999998730-7881


No 32 
>COG1183 PssA Phosphatidylserine synthase [Lipid metabolism]
Probab=64.91  E-value=9.5  Score=17.39  Aligned_cols=39  Identities=10%  Similarity=0.031  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999997279999999999999999999999
Q gi|254780343|r   20 SAAITALKIIAWYVTGFISLLSDGLESIVNIITAIISYF   58 (311)
Q Consensus        20 n~~~~~~k~~~g~~t~S~allada~~s~~D~~~~~~~l~   58 (311)
                      ..+.=....-+.-.+|..+.+..-+||++|.++..+.=.
T Consensus        45 A~i~DglDG~VAR~~~~~s~~G~~lDSLaD~VsFgVaPA   83 (234)
T COG1183          45 ALILDGLDGRVARKLNAKSAFGAELDSLADLVSFGVAPA   83 (234)
T ss_pred             HHHHCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             999806531998760786168887757988988506789


No 33 
>TIGR00473 pssA CDP-diacylglycerol--serine O-phosphatidyltransferase; InterPro: IPR004533 This enzyme, CDP-diacylglycerol--serine O-phosphatidyltransferase, is involved in phospholipid biosynthesis catalyzing the reaction CDP-diacylglycerol + L-serine = CMP + L-1-phosphatidylserine. Members of this family do not bear any significant sequence similarity to the corresponding Escherichia coli protein.; GO: 0003882 CDP-diacylglycerol-serine O-phosphatidyltransferase activity, 0008654 phospholipid biosynthetic process, 0046341 CDP-diacylglycerol metabolic process, 0016020 membrane.
Probab=60.51  E-value=11  Score=16.89  Aligned_cols=50  Identities=18%  Similarity=0.048  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999972--7999999999999999999999999
Q gi|254780343|r   11 RMALWGIPISAAITALKIIAWYVTG--FISLLSDGLESIVNIITAIISYFTL   60 (311)
Q Consensus        11 r~~~~~~~~n~~~~~~k~~~g~~t~--S~allada~~s~~D~~~~~~~l~~~   60 (311)
                      ..+.+-+...+.+=..-..++-.||  ..+-+-.-+||++|+++-.++=-.+
T Consensus        28 ~~a~~li~ls~~~D~LDG~vARktnri~~S~fG~ELDSLAD~vsFGVAPa~l   79 (174)
T TIGR00473        28 VEACLLILLSMIFDFLDGRVARKTNRITVSDFGKELDSLADVVSFGVAPALL   79 (174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             9999999999984101567888635643255664113477889988899999


No 34 
>PRK11023 hypothetical protein; Provisional
Probab=58.10  E-value=12  Score=16.63  Aligned_cols=71  Identities=14%  Similarity=0.151  Sum_probs=42.6

Q ss_pred             HHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             74044555145899999864158883115157647557907999999988799989999999999999998779868999
Q gi|254780343|r  205 NLMDAAVKPEHLEKIKNIIALNASGSIGIHDLKIRQAGATFFINFHLVVDSHMIVLDAHKICNKLERSLEENIGQAIITI  284 (311)
Q Consensus       205 ~Ll~~s~~~~~~~~i~~~i~~~~~~V~~v~~l~~~~~G~~~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~~~~~~v~i  284 (311)
                      .|.|..|+++..++..+.. .+.|||++|+|--  +.|+..-..        ....++ -|..+++.+|...-.+.-..+
T Consensus        80 LLtGqV~~~~~k~~a~~ia-~~~~gVr~V~Nei--~V~~~~s~~--------~~a~D~-~Ittkvk~~ll~~~~v~s~~i  147 (191)
T PRK11023         80 LLIGQSPNAELSARAKQIA-MGVEGVTEVYNEI--RQGQPIGLG--------QASKDT-WITTKVRSQLLTSDSVKSSNV  147 (191)
T ss_pred             EEEEEECCHHHHHHHHHHH-HCCCCCEEEEEEE--EECCCCCCC--------CEEECH-HHHHHHHHHHHHCCCCCCCEE
T ss_conf             9999979999999999998-4668842899999--966887644--------220029-899999999873779776378


Q ss_pred             EEE
Q ss_conf             960
Q gi|254780343|r  285 HIE  287 (311)
Q Consensus       285 h~e  287 (311)
                      .++
T Consensus       148 kV~  150 (191)
T PRK11023        148 KVT  150 (191)
T ss_pred             EEE
T ss_conf             999


No 35 
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=57.67  E-value=13  Score=16.58  Aligned_cols=75  Identities=20%  Similarity=0.247  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---------HHH-HHHHHHHH--HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999727999999999999---------999-99999999--999548998668724146779999896889999
Q gi|254780343|r   25 ALKIIAWYVTGFISLLSDGLESIV---------NII-TAIISYFT--LKYAYRPADNTHPFGHQKAEYIAAVVEGLLMTN   92 (311)
Q Consensus        25 ~~k~~~g~~t~S~allada~~s~~---------D~~-~~~~~l~~--~~~s~k~~d~~~pyG~~r~E~l~~l~~~~~l~~   92 (311)
                      +...+.-..||.-||.||.-|---         =+. +.++.++|  ..+.+.|.+.+.||  .+.-|=+.+.-.+++..
T Consensus       217 ~LG~V~L~vTG~EALyADmGHfg~~~Ir~aw~~~v~P~L~LnY~GQgA~ll~~p~~~~npF--f~~~P~~~~~p~v~lAt  294 (622)
T PRK10745        217 ALGAVVLSITGVEALYADMGHFGKFPIRLAWFTVVLPSLVLNYFGQGALLLKNPEAIKNPF--FLLAPDWALIPLLILAT  294 (622)
T ss_pred             EECCHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCH--HHCCCHHHHHHHHHHHH
T ss_conf             2020331024388886421445763362416999999999986106888860930323857--87085255789999999


Q ss_pred             HHHHHHHHH
Q ss_conf             889999999
Q gi|254780343|r   93 IALIILYES  101 (311)
Q Consensus        93 ~~~~i~~es  101 (311)
                      ++..+..++
T Consensus       295 ~AtiIASQA  303 (622)
T PRK10745        295 LATVIASQA  303 (622)
T ss_pred             HHHHHHHHH
T ss_conf             999998889


No 36 
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=54.22  E-value=14  Score=16.22  Aligned_cols=44  Identities=16%  Similarity=0.265  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf             46876689999999999899999989974044555145899999864
Q gi|254780343|r  178 VLDSIIACFMACNILYQGCKVISSSIKNLMDAAVKPEHLEKIKNIIA  224 (311)
Q Consensus       178 ~~D~i~ai~i~~~i~~~~~~~~~~~~~~Ll~~s~~~~~~~~i~~~i~  224 (311)
                      |++.+.+++-++-++...+-++|..-..-   ...+++..++++.+.
T Consensus       205 ~v~~~~~~~~~~~l~~a~~~~~r~~~~~~---~~t~~de~~~R~Ll~  248 (1099)
T PRK02983        205 FLNALLGLFGALALIAAAIVLFRSQRADN---ALTGEDESAIRGLLE  248 (1099)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCC---CCCHHHHHHHHHHHH
T ss_conf             99999999999999999999946567632---268767999999999


No 37 
>COG1279 Lysine efflux permease [General function prediction only]
Probab=50.97  E-value=16  Score=15.90  Aligned_cols=61  Identities=15%  Similarity=0.011  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             279999999999999999999999999954899866872414677999989688999988999999999
Q gi|254780343|r   35 GFISLLSDGLESIVNIITAIISYFTLKYAYRPADNTHPFGHQKAEYIAAVVEGLLMTNIALIILYESWH  103 (311)
Q Consensus        35 ~S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~i~~es~~  103 (311)
                      .+..+..-+.-+++|.+-.....++.-.--.+    +|    ++..+.-..-..++...|......+..
T Consensus        33 r~~~l~~~~~c~i~D~~Li~~gv~G~~~li~~----~p----~l~~i~~~~G~~FLl~yg~~a~~~a~~   93 (202)
T COG1279          33 REYVLPIALLCAISDIVLISAGVFGVGALIAK----SP----WLLLIVRWGGAAFLLYYGLLALKSAPR   93 (202)
T ss_pred             HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CH----HHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             62199999999999999999999889999986----78----999999999899999999999985066


No 38 
>pfam09877 DUF2104 Predicted membrane protein (DUF2104). This domain, found in various hypothetical archaeal proteins, has no known function.
Probab=50.37  E-value=17  Score=15.84  Aligned_cols=26  Identities=15%  Similarity=0.390  Sum_probs=12.5

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             87765302772246876689999999
Q gi|254780343|r  166 CGLLLVLITEYTVLDSIIACFMACNI  191 (311)
Q Consensus       166 i~~~~~~~~~~~~~D~i~ai~i~~~i  191 (311)
                      ++..+..-+|+.-.+...++++++++
T Consensus        70 lgf~lGMRPGYGr~E~~~G~iiA~i~   95 (100)
T pfam09877        70 LGFVLGMRPGYGRIETVLGLIIALIL   95 (100)
T ss_pred             HHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             85012568898736899999999999


No 39 
>pfam06570 DUF1129 Protein of unknown function (DUF1129). This family consists of several hypothetical bacterial proteins of unknown function.
Probab=49.64  E-value=17  Score=15.77  Aligned_cols=56  Identities=5%  Similarity=0.045  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CHH-HHHHHHHHHHHHHHHHHHH
Q ss_conf             9989688999988999999999986300223221--026-7888872012467999998
Q gi|254780343|r   82 AAVVEGLLMTNIALIILYESWHNMSHSPSNDFSI--MGL-FIGFMANIISLFWGKWLIY  137 (311)
Q Consensus        82 ~~l~~~~~l~~~~~~i~~es~~~l~~~~~~~~~~--~~~-~i~~~~~~v~~~~~~~~~~  137 (311)
                      +-+..--.+++.+++.+..++..++++...+...  ..+ ..++++.+.....+.+..+
T Consensus        77 w~~alD~~Ll~~~if~~m~Gi~~~Fs~~~~~~~~Gi~tlil~~~~gG~~m~~~~~~l~~  135 (206)
T pfam06570        77 WLMALDNSLLFLGIFALMNGIMALFSKNAQPAYSGITTLLLTSLVGGLAMYYMYRYLYR  135 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             89999982899999999999999947888877552999999999999999999999641


No 40 
>KOG2877 consensus
Probab=48.38  E-value=18  Score=15.65  Aligned_cols=29  Identities=14%  Similarity=0.098  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             72799999999999999999999999999
Q gi|254780343|r   34 TGFISLLSDGLESIVNIITAIISYFTLKY   62 (311)
Q Consensus        34 t~S~allada~~s~~D~~~~~~~l~~~~~   62 (311)
                      |||.+=+.+-.|--+|..+....-.+...
T Consensus       111 TnsSsPLGELFDHG~DS~stvf~~l~~~s  139 (389)
T KOG2877         111 TNSSSPLGELFDHGCDSISTVFVTLAVCS  139 (389)
T ss_pred             CCCCCCCHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             78999737665135105788999999999


No 41 
>PRK02047 hypothetical protein; Provisional
Probab=47.63  E-value=18  Score=15.57  Aligned_cols=56  Identities=13%  Similarity=0.202  Sum_probs=34.9

Q ss_pred             HCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHH
Q ss_conf             04455514589999986415888311515764755790799999998879998999999
Q gi|254780343|r  207 MDAAVKPEHLEKIKNIIALNASGSIGIHDLKIRQAGATFFINFHLVVDSHMIVLDAHKI  265 (311)
Q Consensus       207 l~~s~~~~~~~~i~~~i~~~~~~V~~v~~l~~~~~G~~~~v~~~i~v~~~~~~~eah~i  265 (311)
                      ||. ..++..+.|.+++.++.|+... .++..+.+....|+++.+.+... +-++.+.+
T Consensus        22 mG~-a~~~~~~~V~~iv~~h~p~~~~-~~v~~r~S~~G~Y~Svtv~i~at-s~~QLd~i   77 (91)
T PRK02047         22 MGK-AHPEFADTIFKVVSVHDPEFDL-EKIEERPSSGGNYTGLTITVRAT-SREQLDNI   77 (91)
T ss_pred             EEC-CCCCHHHHHHHHHHHHCCCCCC-CCEEECCCCCCEEEEEEEEEEEC-CHHHHHHH
T ss_conf             975-8710789999999997799980-33787149998689999999989-99999999


No 42 
>pfam10934 DUF2634 Protein of unknown function (DUF2634). Some members in this family of proteins are annotated as phage related, xkdS however currently there is no known function.
Probab=47.58  E-value=18  Score=15.57  Aligned_cols=51  Identities=10%  Similarity=0.325  Sum_probs=36.9

Q ss_pred             HHHHHHCCCCC-----HHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEEEEEEEEEE
Q ss_conf             89974044555-----14589999986415888311515764755790799999998
Q gi|254780343|r  202 SIKNLMDAAVK-----PEHLEKIKNIIALNASGSIGIHDLKIRQAGATFFINFHLVV  253 (311)
Q Consensus       202 ~~~~Ll~~s~~-----~~~~~~i~~~i~~~~~~V~~v~~l~~~~~G~~~~v~~~i~v  253 (311)
                      -+..|+|..-+     .+....|++.+ +..|.+.+|++..+...|+...++..|.-
T Consensus        52 el~~liG~~~~~~~~~sEi~R~I~EaL-l~d~rI~~V~nf~f~~~~~~l~v~f~V~t  107 (112)
T pfam10934        52 ELEDLIGKIYSKDYVESEVKRMIEEAL-LVDPRIKDVDNFEFEKEKDSLYVSFTVIT  107 (112)
T ss_pred             HHHHHHCCCCCHHHHHHHHHHHHHHHH-HCCCCCCEEEEEEEEEECCEEEEEEEEEE
T ss_conf             799984777898999999999999998-54987443742899997899999999999


No 43 
>pfam02038 ATP1G1_PLM_MAT8 ATP1G1/PLM/MAT8 family.
Probab=46.61  E-value=19  Score=15.47  Aligned_cols=34  Identities=6%  Similarity=0.200  Sum_probs=25.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98668724146779999896889999889999999
Q gi|254780343|r   67 ADNTHPFGHQKAEYIAAVVEGLLMTNIALIILYES  101 (311)
Q Consensus        67 ~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~i~~es  101 (311)
                      .++.|.|-|..+.. ++|+.+.+++.+|+.++...
T Consensus         4 ~~dpF~YDy~tLRi-gGLi~a~vlfi~Gi~iils~   37 (51)
T pfam02038         4 KEDPFYYDYETLRI-GGLIFAGVLFIVGIIIILSG   37 (51)
T ss_pred             CCCCCCCCHHHHHH-CHHHHHHHHHHHHHHHHHCC
T ss_conf             57886244589851-00599999999999999858


No 44 
>PRK10054 putative MFS-type transporter YdeE; Provisional
Probab=45.24  E-value=20  Score=15.34  Aligned_cols=42  Identities=12%  Similarity=0.131  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf             876689999999999899999989974044555145899999
Q gi|254780343|r  180 DSIIACFMACNILYQGCKVISSSIKNLMDAAVKPEHLEKIKN  221 (311)
Q Consensus       180 D~i~ai~i~~~i~~~~~~~~~~~~~~Ll~~s~~~~~~~~i~~  221 (311)
                      +....++++..++-.|=-+..-+...+.+.-.|++...+...
T Consensus       296 ~~~~~~~i~~~ifTiGE~i~~P~~~~~v~~laP~~~RG~Y~g  337 (395)
T PRK10054        296 NNLLFWGMSAAVFTVGEIIYAPGEYMLIDNIAPPGMKASYFS  337 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHH
T ss_conf             789999999999999999986559999987399340325898


No 45 
>cd06159 S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group appears to be limited to Archaeal S2P/M50s homologs with additional putative N-terminal transmembrane spanning regions, relative to the core protein, and either one or two PDZ domains present.
Probab=42.10  E-value=22  Score=15.03  Aligned_cols=148  Identities=17%  Similarity=0.148  Sum_probs=71.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------------CCCHHHHHHHHHHHHHHHHH-----HHH
Q ss_conf             4146779999896889999889999999999863002232------------21026788887201246799-----999
Q gi|254780343|r   74 GHQKAEYIAAVVEGLLMTNIALIILYESWHNMSHSPSNDF------------SIMGLFIGFMANIISLFWGK-----WLI  136 (311)
Q Consensus        74 G~~r~E~l~~l~~~~~l~~~~~~i~~es~~~l~~~~~~~~------------~~~~~~i~~~~~~v~~~~~~-----~~~  136 (311)
                      .|....+++..+.-+.|.++...++..++..+.+|++...            ..+++..+++++++.....-     ..+
T Consensus        54 fWR~~g~igI~~~~i~Mi~~~~~ll~~~~~~l~~pp~~~~~p~~~l~iPGv~~~ip~~~~~~al~v~~vvHE~~Hgi~ar  133 (263)
T cd06159          54 FWRAFGNIGIPIAFVGMIFMLLLILLSAIIILSGPPAPLNAPRNVLVIPGVNIFIPLPYGIIALVVGVVVHELSHGILAR  133 (263)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             67877753599999999999999999999984589888887654442479875533789999999999999888899999


Q ss_pred             HHHHCCCCHHH-------------------HHHHHH----HHHHHHHHHH-HHHHHHHHHCCCCHHHHHHHHHHHHH-HH
Q ss_conf             87410330577-------------------875998----6653788788-88877653027722468766899999-99
Q gi|254780343|r  137 YSGEKNHSAAF-------------------KANGQH----FVADVVMSAG-VLCGLLLVLITEYTVLDSIIACFMAC-NI  191 (311)
Q Consensus       137 ~~~~~~~s~~l-------------------~a~~~~----~~~D~~~s~~-vii~~~~~~~~~~~~~D~i~ai~i~~-~i  191 (311)
                      ..+-+.+|..+                   ++....    .-....+++. .+++..+..+.+..|++-..+++-++ .+
T Consensus       134 ~~~i~vkS~G~ll~~ip~GAFvEpdeee~~~a~~~~r~ri~aAG~~~N~v~~~i~~~l~fl~W~~~iNf~lglfN~lPa~  213 (263)
T cd06159         134 VEGIKVKSGGLLLLIIPPGAFVEPDEEELNKADRRIRLRIFAAGVTANFVVALIAFALFFLYWIFWINFLLGLFNCLPAI  213 (263)
T ss_pred             HCCCEECCCHHHHHHHCCCCCCCCCHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             81863301156786616422358897998528815453320036099899999999999999999999999998357666


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf             999899999989974044555145899999
Q gi|254780343|r  192 LYQGCKVISSSIKNLMDAAVKPEHLEKIKN  221 (311)
Q Consensus       192 ~~~~~~~~~~~~~~Ll~~s~~~~~~~~i~~  221 (311)
                      -.-|.++++|....+.++.+++...+..+.
T Consensus       214 plDGg~v~~~~~~~~~~r~~~~~~~~~~~~  243 (263)
T cd06159         214 PLDGGHVFRDLLEALLRRFPSEKAERVVNA  243 (263)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             576067999989999853875117889999


No 46 
>PRK08238 hypothetical protein; Validated
Probab=40.08  E-value=24  Score=14.84  Aligned_cols=33  Identities=12%  Similarity=0.043  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             468766899999999998999999899740445
Q gi|254780343|r  178 VLDSIIACFMACNILYQGCKVISSSIKNLMDAA  210 (311)
Q Consensus       178 ~~D~i~ai~i~~~i~~~~~~~~~~~~~~Ll~~s  210 (311)
                      |-.|-.-..++.++++.-.++.+-+.+.-|+.-
T Consensus       423 Y~~p~~lW~~~p~ll~Wi~R~w~~a~rg~m~dD  455 (481)
T PRK08238        423 YAHPQLLWLACPILLYWISRVWLLAHRGEMHDD  455 (481)
T ss_pred             HCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             078879999999999999999999976987899


No 47 
>PRK10369 heme lyase subunit NrfE; Provisional
Probab=39.17  E-value=25  Score=14.75  Aligned_cols=18  Identities=11%  Similarity=0.329  Sum_probs=7.7

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             896889999889999999
Q gi|254780343|r   84 VVEGLLMTNIALIILYES  101 (311)
Q Consensus        84 l~~~~~l~~~~~~i~~es  101 (311)
                      .+.+..+.+.|.++...+
T Consensus       262 ~i~tF~lsl~GTFlVRSG  279 (552)
T PRK10369        262 AIVTLMLSLLGTLIVRSG  279 (552)
T ss_pred             HHHHHHHHHHHHHHHHCC
T ss_conf             999999999876722135


No 48 
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=38.18  E-value=26  Score=14.65  Aligned_cols=44  Identities=9%  Similarity=0.165  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf             24687668999999999989999998997404455514589999
Q gi|254780343|r  177 TVLDSIIACFMACNILYQGCKVISSSIKNLMDAAVKPEHLEKIK  220 (311)
Q Consensus       177 ~~~D~i~ai~i~~~i~~~~~~~~~~~~~~Ll~~s~~~~~~~~i~  220 (311)
                      .+.+....++++..++..|--+..-+...+.+.-.|++...+..
T Consensus       292 ~~~~~~~~~~i~~~lftiGe~l~~P~~~s~va~lap~~~rG~y~  335 (400)
T PRK11646        292 GMVSNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYM  335 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHH
T ss_conf             99988999999999999999999754899999838965432376


No 49 
>pfam06181 DUF989 Protein of unknown function (DUF989). This family consists of several hypothetical bacterial proteins of unknown function. The haem-binding domain towards the C-terminus has been merged into Cytochrome_C, pfam00034.
Probab=36.25  E-value=27  Score=14.46  Aligned_cols=137  Identities=12%  Similarity=0.061  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             1467799998968899998899999999998630022322102-678888720124679999987410330577875998
Q gi|254780343|r   75 HQKAEYIAAVVEGLLMTNIALIILYESWHNMSHSPSNDFSIMG-LFIGFMANIISLFWGKWLIYSGEKNHSAAFKANGQH  153 (311)
Q Consensus        75 ~~r~E~l~~l~~~~~l~~~~~~i~~es~~~l~~~~~~~~~~~~-~~i~~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~  153 (311)
                      +-|=|--+.-.+|+.++.+-.+.--+..  +++|...+.++.. +.+++.++++..+.+-.+-| ..-.+++.+.     
T Consensus        79 WFKWeaY~TWlSG~aLL~vvYy~~a~~y--LiD~~v~dls~~~Ai~isl~~l~~gw~vYd~lcr-s~l~~~~~~~-----  150 (299)
T pfam06181        79 WFKWEAYTTWLSGFALLTVVYYVGAELY--LIDPSVADLSPWQAIAIGLGSLVVGWLVYDLLCR-SPLGKRPTLL-----  150 (299)
T ss_pred             EEEHHHHHHHHHHHHHHHHHHHHCCCEE--EECCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCHHH-----
T ss_conf             8502129999999999999998278537--7661012368899999999999999999999996-3201484089-----


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH-CCCCCHHHHHHHHH
Q ss_conf             6653788788888776530277224687668999999999989----99999899740-44555145899999
Q gi|254780343|r  154 FVADVVMSAGVLCGLLLVLITEYTVLDSIIACFMACNILYQGC----KVISSSIKNLM-DAAVKPEHLEKIKN  221 (311)
Q Consensus       154 ~~~D~~~s~~vii~~~~~~~~~~~~~D~i~ai~i~~~i~~~~~----~~~~~~~~~Ll-~~s~~~~~~~~i~~  221 (311)
                        .-++..+.++.+....+.++-.-.=--.+-+++-+|....+    |-=|.-...+. |++||++.-++-++
T Consensus       151 --~~~~~~~~~~~~~~~~q~FsgRaAfihvGA~~gTiM~aNVFfvIIP~QrkvV~al~~G~~pDp~~g~~aK~  221 (299)
T pfam06181       151 --GAVLFVLLVAAAYGLTQVFSGRAAFLHVGAMIATIMSANVFFVIIPNQRKVVAALKAGRTPDPKLGKRAKQ  221 (299)
T ss_pred             --HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEEEEEECCHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf             --99999999999999987714068999999999999857346898278389999998599999157788865


No 50 
>PRK09977 putative Mg(2+) transport ATPase; Provisional
Probab=36.07  E-value=28  Score=14.44  Aligned_cols=59  Identities=10%  Similarity=0.098  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf             145899999864158883115157647557907999999988799989999999999999998779868
Q gi|254780343|r  213 PEHLEKIKNIIALNASGSIGIHDLKIRQAGATFFINFHLVVDSHMIVLDAHKICNKLERSLEENIGQAI  281 (311)
Q Consensus       213 ~~~~~~i~~~i~~~~~~V~~v~~l~~~~~G~~~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~~~~~~  281 (311)
                      ++...++.+.+...   -.+++++++.+..++..+++.+.++++.++.+       +-+.|++..++..
T Consensus       153 ~~~~~~i~~~l~~~---~i~i~~v~i~~~~~~~~v~l~v~~~~~~~~~d-------l~~~L~~i~gV~~  211 (215)
T PRK09977        153 NGNTVSMLDWFKQQ---KIKTDLVSLQENEDHEVVTIDITLHATTSIED-------LLRLLKGMAGVKG  211 (215)
T ss_pred             CCCHHHHHHHHHHC---CCEEEEEEEEECCCCCEEEEEEEECCCCCHHH-------HHHHHHCCCCCEE
T ss_conf             58277999999984---97589999898288858999999779874999-------9999855999358


No 51 
>pfam07423 DUF1510 Protein of unknown function (DUF1510). This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=35.58  E-value=28  Score=14.39  Aligned_cols=23  Identities=13%  Similarity=0.218  Sum_probs=9.9

Q ss_pred             CEEEEEEEEEECCEEEEEEEEEE
Q ss_conf             11515764755790799999998
Q gi|254780343|r  231 IGIHDLKIRQAGATFFINFHLVV  253 (311)
Q Consensus       231 ~~v~~l~~~~~G~~~~v~~~i~v  253 (311)
                      ..+.+++....|..+.|.++.+=
T Consensus       180 kA~GtVsdK~~~~~Y~V~I~WVd  202 (214)
T pfam07423       180 KAIGTVSDKDSGKKYRVYIEWVD  202 (214)
T ss_pred             CEEEEEECCCCCCEEEEEEEEEC
T ss_conf             22799602778846899999862


No 52 
>COG4035 Predicted membrane protein [Function unknown]
Probab=35.29  E-value=28  Score=14.36  Aligned_cols=26  Identities=23%  Similarity=0.511  Sum_probs=11.3

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             88776530277224687668999999
Q gi|254780343|r  165 LCGLLLVLITEYTVLDSIIACFMACN  190 (311)
Q Consensus       165 ii~~~~~~~~~~~~~D~i~ai~i~~~  190 (311)
                      +++..+..-+|+.-.+.+.+-+.+++
T Consensus        75 lig~v~gMRPGYGR~Etv~Gt~LA~l  100 (108)
T COG4035          75 LIGFVLGMRPGYGRVETVVGTFLAVL  100 (108)
T ss_pred             HHHHHHCCCCCCCEEEHHHHHHHHHH
T ss_conf             98875046788764200388999999


No 53 
>PRK08601 NADH dehydrogenase subunit 5; Validated
Probab=35.26  E-value=28  Score=14.36  Aligned_cols=32  Identities=19%  Similarity=0.260  Sum_probs=16.6

Q ss_pred             CCCCCCCHHHHH------HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             866872414677------999989688999988999999
Q gi|254780343|r   68 DNTHPFGHQKAE------YIAAVVEGLLMTNIALIILYE  100 (311)
Q Consensus        68 d~~~pyG~~r~E------~l~~l~~~~~l~~~~~~i~~e  100 (311)
                      +.++||-.+=-|      |.+++.-+. +...|.+++..
T Consensus       215 sAQ~P~h~WLp~am~~PTPVSAl~HA~-mV~AGv~ll~R  252 (506)
T PRK08601        215 AAQWPFHRWLIESAVAPTPVSAIMHAG-IVNAGGVMLTR  252 (506)
T ss_pred             HCCCCCHHHHHHHHCCCCCHHHHHHHH-HHHHHHHHHHH
T ss_conf             411753455578766898099999999-99988999999


No 54 
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase; InterPro: IPR004558   This family represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. HemN catalyses the anaerobic transformation of coproporhyrinogen-III into protoporphyrinogen-IX during porphyrin biosynthesis. Several species, including Escherichia coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity, IPR004559 from INTERPRO. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterised protein.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin biosynthetic process, 0005737 cytoplasm.
Probab=33.50  E-value=30  Score=14.18  Aligned_cols=70  Identities=21%  Similarity=0.204  Sum_probs=45.0

Q ss_pred             CHHHHHHHHHHHHHCCCCC---CEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf             5145899999864158883---1151576475579079999999887999899999999999999987798689999605
Q gi|254780343|r  212 KPEHLEKIKNIIALNASGS---IGIHDLKIRQAGATFFINFHLVVDSHMIVLDAHKICNKLERSLEENIGQAIITIHIEP  288 (311)
Q Consensus       212 ~~~~~~~i~~~i~~~~~~V---~~v~~l~~~~~G~~~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~~~~~~v~ih~ep  288 (311)
                      .+..++.+.+.+++-.|-+   +.|..+|   .|...        |.-+|..+++.+.+.+++...+--...++.|++||
T Consensus        81 ~~~YL~~l~ke~~l~~~~~d~~R~V~QLH---wGGGT--------P~YL~~~Q~~~l~~~i~~~F~nf~~daEiSiEidP  149 (462)
T TIGR00538        81 KDPYLEALKKEIALVAPLLDKDREVAQLH---WGGGT--------PTYLSPEQIEELMKEIREAFPNFSEDAEISIEIDP  149 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCEEEEE---CCCCC--------CCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf             01679999999999877752489468876---27898--------33378899999999999873201158447765237


Q ss_pred             CCCC
Q ss_conf             8876
Q gi|254780343|r  289 ANEV  292 (311)
Q Consensus       289 ~~~~  292 (311)
                      ++-.
T Consensus       150 R~~~  153 (462)
T TIGR00538       150 RYLT  153 (462)
T ss_pred             CCCC
T ss_conf             4137


No 55 
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=32.22  E-value=32  Score=14.05  Aligned_cols=14  Identities=21%  Similarity=0.273  Sum_probs=6.1

Q ss_pred             HHHHHHHHCCCCCH
Q ss_conf             99899740445551
Q gi|254780343|r  200 SSSIKNLMDAAVKP  213 (311)
Q Consensus       200 ~~~~~~Ll~~s~~~  213 (311)
                      .|+...+-|++.++
T Consensus       229 ~Da~~h~aEE~~np  242 (475)
T TIGR03428       229 FGSAGELSEETKNP  242 (475)
T ss_pred             HHHHHHHHHHHCCC
T ss_conf             77888768885185


No 56 
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=31.83  E-value=32  Score=14.01  Aligned_cols=66  Identities=23%  Similarity=0.344  Sum_probs=41.4

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             4555145899999864158883115157647557907999999988799989999999999999998779868999
Q gi|254780343|r  209 AAVKPEHLEKIKNIIALNASGSIGIHDLKIRQAGATFFINFHLVVDSHMIVLDAHKICNKLERSLEENIGQAIITI  284 (311)
Q Consensus       209 ~s~~~~~~~~i~~~i~~~~~~V~~v~~l~~~~~G~~~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~~~~~~v~i  284 (311)
                      ....|+..++|.+.+ ++ -|. .+..+.....++.-.+.+.+.|+.+-+       .+.+.+.|.+.+++..+.+
T Consensus        10 a~~rPevLERiLRVv-RH-RGF-~v~~m~m~~~~~~~~~~i~ltV~SdR~-------i~lL~~QL~KL~DV~~v~v   75 (76)
T PRK11152         10 ARFRPEVLERVLRVV-RH-RGF-QVCQMNMTANSDAQNINIELTVASERA-------IDLLSSQLNKLVDVAHVEI   75 (76)
T ss_pred             EECCCHHHEEEEEEE-EE-CCE-EEEEEEEEECCCCCEEEEEEEEECCCH-------HHHHHHHHHHHCCEEEEEE
T ss_conf             706977831263478-41-684-999976267389988999999905773-------9999998874271689996


No 57 
>TIGR00900 2A0121 H+ Antiporter protein; InterPro: IPR004751   Drug antiporters which use the proton motive force for the active efflux of the drug .; GO: 0016021 integral to membrane.
Probab=31.74  E-value=32  Score=14.00  Aligned_cols=188  Identities=15%  Similarity=0.174  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH---HHHHHHHHHHH--------
Q ss_conf             9999999999999727999999999999999999999999995489986687241467---79999896889--------
Q gi|254780343|r   21 AAITALKIIAWYVTGFISLLSDGLESIVNIITAIISYFTLKYAYRPADNTHPFGHQKA---EYIAAVVEGLL--------   89 (311)
Q Consensus        21 ~~~~~~k~~~g~~t~S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r~---E~l~~l~~~~~--------   89 (311)
                      +.=++..+..++..-+.++..|++    -.+.+...++..|.=.+++.+++++-+.|-   ..+.-+..|+-        
T Consensus       151 vgPgigg~~~~~~g~~~~~~~~a~----~F~~s~~l~~~~r~p~~~~~~~~~~~~rkts~~~~~rd~~eG~~~~~~~~~L  226 (387)
T TIGR00900       151 VGPGIGGLLYATLGIKWAILVDAV----GFLISALLIVSVRIPEKAASEIEPLSERKTSLKAVLRDILEGLKFVLKNKVL  226 (387)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf             679999999999999999999999----9999999986505766678888887525658999999999999999707689


Q ss_pred             HHHHHHHHHHH--------HH-----HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             99988999999--------99-----998630022322102678888720124679999987410330577875998665
Q gi|254780343|r   90 MTNIALIILYE--------SW-----HNMSHSPSNDFSIMGLFIGFMANIISLFWGKWLIYSGEKNHSAAFKANGQHFVA  156 (311)
Q Consensus        90 l~~~~~~i~~e--------s~-----~~l~~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~  156 (311)
                      ..+....++..        .+     .+.++.++.+.++.....++.+++.++....++++..+|..+...         
T Consensus       227 ~~l~~~~~~~~~~~~p~~~~l~P~~~~~~~~~~~~~~G~~~~af~~G~l~G~L~~~~~L~~~~~~~~~r~~---------  297 (387)
T TIGR00900       227 RTLLLLALLFNLVFAPIIVVLFPYVTSKYLNRTSVHVGWVLAAFGLGALLGALLLGSILRRLLGRYFKRIA---------  297 (387)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH---------
T ss_conf             99999999999985127887630321444078622567999999999999999999999887611343489---------


Q ss_pred             HHHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             37887888887765302772246--87668999999999989999998997404455514589999986
Q gi|254780343|r  157 DVVMSAGVLCGLLLVLITEYTVL--DSIIACFMACNILYQGCKVISSSIKNLMDAAVKPEHLEKIKNII  223 (311)
Q Consensus       157 D~~~s~~vii~~~~~~~~~~~~~--D~i~ai~i~~~i~~~~~~~~~~~~~~Ll~~s~~~~~~~~i~~~i  223 (311)
                        +.+.++.+..+.....++..-  ...-.+..+.+.+..+.....--...+++++.++|.+-++-...
T Consensus       298 --l~~~a~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~q~~v~~~~~GRV~~~~  364 (387)
T TIGR00900       298 --LITGAVLVIGLAILVVGLLPPRNSGFLLLLVLAFAIGVGVGLINVPIGTLLQRSVPAELLGRVFGLQ  364 (387)
T ss_pred             --HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             --9999999999998987623896148999999999864203455877887888750078515899999


No 58 
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=31.09  E-value=33  Score=13.93  Aligned_cols=48  Identities=19%  Similarity=0.271  Sum_probs=32.8

Q ss_pred             CHHHHHHHHHHHHHCCCCCCEEEEEEEEEE-----CC-EEEEEEEEEECCCCCHHHH
Q ss_conf             514589999986415888311515764755-----79-0799999998879998999
Q gi|254780343|r  212 KPEHLEKIKNIIALNASGSIGIHDLKIRQA-----GA-TFFINFHLVVDSHMIVLDA  262 (311)
Q Consensus       212 ~~~~~~~i~~~i~~~~~~V~~v~~l~~~~~-----G~-~~~v~~~i~v~~~~~~~ea  262 (311)
                      .+-...++.+.++.+  + .++.++.++..     |. -+.+.+.+.+|++.++.+.
T Consensus         9 rpGIv~~it~~La~~--~-inI~~l~t~~~~a~~sg~~lF~a~~~v~lP~~~~~~~L   62 (81)
T cd04869           9 RPGIVHEVTQFLAQR--N-INIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDAL   62 (81)
T ss_pred             CCCHHHHHHHHHHHC--C-CCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCCHHHH
T ss_conf             988799999999986--9-98146687776399998103689999937999999999


No 59 
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=30.76  E-value=34  Score=13.89  Aligned_cols=44  Identities=11%  Similarity=0.036  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf             46876689999999999899999989974044555145899999
Q gi|254780343|r  178 VLDSIIACFMACNILYQGCKVISSSIKNLMDAAVKPEHLEKIKN  221 (311)
Q Consensus       178 ~~D~i~ai~i~~~i~~~~~~~~~~~~~~Ll~~s~~~~~~~~i~~  221 (311)
                      +...+..+++..-++-.+-..+..+-|.|-..+-|....+...+
T Consensus       293 ~~~~ii~~~~l~s~~s~~n~~~~~~sR~lyamar~G~lP~~f~~  336 (469)
T PRK11049        293 AAASVINFVVLTSAASSANSGVFSTSRMLFGLAQEGVAPKAFAK  336 (469)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf             69999999999999999999999999999998708997789875


No 60 
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=30.65  E-value=34  Score=13.88  Aligned_cols=33  Identities=0%  Similarity=-0.162  Sum_probs=24.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             367889999999999999999999999999727
Q gi|254780343|r    4 DDQNNMIRMALWGIPISAAITALKIIAWYVTGF   36 (311)
Q Consensus         4 ~~~~~~~r~~~~~~~~n~~~~~~k~~~g~~t~S   36 (311)
                      .+++|....++++...++...+.-.++|++.+.
T Consensus       134 p~~~rg~~~g~~~~~~~~G~~~GP~iGg~l~~~  166 (406)
T PRK09874        134 PRNKSGWALGTLSTGGVSGALLGPLAGGLLADH  166 (406)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             775699999999999998888887679999997


No 61 
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=30.62  E-value=34  Score=13.88  Aligned_cols=11  Identities=18%  Similarity=0.117  Sum_probs=4.6

Q ss_pred             HHHHHHHHHHH
Q ss_conf             79999896889
Q gi|254780343|r   79 EYIAAVVEGLL   89 (311)
Q Consensus        79 E~l~~l~~~~~   89 (311)
                      -+..++..+..
T Consensus        85 g~~~gf~~gW~   95 (445)
T PRK11357         85 SRPLAFLSGWA   95 (445)
T ss_pred             CHHHHHHHHHH
T ss_conf             72899999999


No 62 
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in  this CD are  N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.50  E-value=34  Score=13.87  Aligned_cols=60  Identities=15%  Similarity=0.176  Sum_probs=36.3

Q ss_pred             CHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             51458999998641588831151576475579079999999887999899999999999999987
Q gi|254780343|r  212 KPEHLEKIKNIIALNASGSIGIHDLKIRQAGATFFINFHLVVDSHMIVLDAHKICNKLERSLEEN  276 (311)
Q Consensus       212 ~~~~~~~i~~~i~~~~~~V~~v~~l~~~~~G~~~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~  276 (311)
                      .|-.+.++.+.++..--.|.++++-|.+..-+-..+.++++++.. +-+.    .+++.+.|+++
T Consensus         8 ~PG~L~~l~~~ia~~gaNI~~i~H~R~~~~~~~~~~~v~i~~Et~-~~eh----~~~i~~~L~~~   67 (73)
T cd04886           8 RPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR-GAEH----IEEIIAALREA   67 (73)
T ss_pred             CCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEEEECC-CHHH----HHHHHHHHHHC
T ss_conf             981799999999986982899999864588988769999999849-9999----99999999986


No 63 
>PRK09881 ATP-dependent peptide transporter membrane subunit; Provisional
Probab=30.27  E-value=34  Score=13.84  Aligned_cols=50  Identities=16%  Similarity=0.227  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf             9999999999999999999999972799999999999999999999999999548998668724146
Q gi|254780343|r   11 RMALWGIPISAAITALKIIAWYVTGFISLLSDGLESIVNIITAIISYFTLKYAYRPADNTHPFGHQK   77 (311)
Q Consensus        11 r~~~~~~~~n~~~~~~k~~~g~~t~S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r   77 (311)
                      +.+.+++.+-+++.+.-+++-+++.-.-.       -.          ......+||+.+|++|-..
T Consensus        31 ~~a~~g~~il~~~~l~ai~~p~lap~dp~-------~~----------~~~~~l~pPS~~h~lGTD~   80 (296)
T PRK09881         31 PLTVTGAVIIVLMLLMMIFSPWLATHDPN-------AI----------DLTARLLPPSAAHWFGTDE   80 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCHH-------HC----------CHHHCCCCCCCCCCCCCCC
T ss_conf             89999999999999999999981799943-------21----------8644059998767898897


No 64 
>pfam03755 YicC_N YicC-like family, N-terminal region. Family of bacterial proteins. Although poorly characterized, the members of this protein family have been demonstrated to play a role in stationary phase survival. These proteins are not essential during stationary phase.
Probab=30.25  E-value=34  Score=13.84  Aligned_cols=44  Identities=14%  Similarity=0.386  Sum_probs=24.3

Q ss_pred             CCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHC--CCCEEEEEEECCC
Q ss_conf             790799999998879998999999999999999877--9868999960588
Q gi|254780343|r  242 GATFFINFHLVVDSHMIVLDAHKICNKLERSLEENI--GQAIITIHIEPAN  290 (311)
Q Consensus       242 G~~~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~~--~~~~v~ih~ep~~  290 (311)
                      =|..+.|+.+-+|+.+.-.|.     ++++.+++++  |-.++.|++++..
T Consensus        26 vN~r~LDi~irlP~~l~~~E~-----~ir~~i~~~l~RGkv~~~i~~~~~~   71 (159)
T pfam03755        26 VNHRYLDINLRLPRELRALEP-----KIRELIKKRLSRGKVEVSLRLERAG   71 (159)
T ss_pred             EECCCEEEEEECCHHHHHHHH-----HHHHHHHHHCCCCEEEEEEEEEECC
T ss_conf             035746668745778899899-----9999999765385499999998767


No 65 
>pfam02705 K_trans K+ potassium transporter. This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP), yeast (HAK), and plant (AtKT) sequences as members.
Probab=30.16  E-value=34  Score=13.83  Aligned_cols=67  Identities=15%  Similarity=0.191  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHHHHH----------HHHHHHHHH--HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             97279999999999999----------999999999--999954899866872414677999989688999988999999
Q gi|254780343|r   33 VTGFISLLSDGLESIVN----------IITAIISYF--TLKYAYRPADNTHPFGHQKAEYIAAVVEGLLMTNIALIILYE  100 (311)
Q Consensus        33 ~t~S~allada~~s~~D----------~~~~~~~l~--~~~~s~k~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~i~~e  100 (311)
                      .||+-||.||.-|.-.-          .-+.++.++  +.++.+.|.+...||  .+.-|=+.+.-.+++..++..+..+
T Consensus       253 iTGaEALyADlGHFg~~~Ir~aw~~~V~P~L~L~Y~GQ~A~l~~~p~~~~npF--f~~~P~~~~~P~~ilAtlAtIIASQ  330 (731)
T pfam02705       253 ITGVEAMFADLGHFSLLAIQLAFTFFVYPCLILAYMGQAAYLSKHPEAYANPF--YRSIPDWLYWPVFIIATLAAIVASQ  330 (731)
T ss_pred             ECCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCH--HHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             14288987651466763387889999999999985015888752912205837--8758813688999999999999998


Q ss_pred             H
Q ss_conf             9
Q gi|254780343|r  101 S  101 (311)
Q Consensus       101 s  101 (311)
                      +
T Consensus       331 A  331 (731)
T pfam02705       331 A  331 (731)
T ss_pred             H
T ss_conf             9


No 66 
>pfam04972 BON Putative phospholipid-binding domain. This domain is found in a family of osmotic shock protection proteins. It is also found in some Secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes.
Probab=29.96  E-value=35  Score=13.81  Aligned_cols=54  Identities=19%  Similarity=0.193  Sum_probs=21.2

Q ss_pred             HHHHHHHHCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf             99998641588831151576475579079999999887999899999999999999987798689
Q gi|254780343|r  218 KIKNIIALNASGSIGIHDLKIRQAGATFFINFHLVVDSHMIVLDAHKICNKLERSLEENIGQAII  282 (311)
Q Consensus       218 ~i~~~i~~~~~~V~~v~~l~~~~~G~~~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~~~~~~v  282 (311)
                      +|++.+. ..+...+. ++++.-.+....+.-++  +..       +..+++++..++-.++..+
T Consensus         3 ~i~~~l~-~~~~~~~~-~I~V~v~~g~V~L~G~v--~s~-------~~~~~a~~~a~~~~Gv~~V   56 (64)
T pfam04972         3 KVKAALL-ADPGLPAS-DIKVTVENGVVTLSGTV--DSE-------EEKEKAEEIARNVKGVKKV   56 (64)
T ss_pred             HHHHHHH-CCCCCCCC-CEEEEEECCEEEEEEEC--CCH-------HHHHHHHHHHHCCCCCCEE
T ss_conf             8999883-49899857-16999989699999985--999-------9999999999669698589


No 67 
>TIGR02380 ECA_wecA undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; InterPro: IPR012750    Members of this family are the WecA enzymes of enterobacterial common antigen (ECA) biosynthesis, undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase. This family represents one narrow clade, and closely related sequences outside this clade may represent enzymes that catalyse the same specific reaction, but in the context of different pathways. A His-rich motif in a cytosolic loop of this integral membrane protein, shown to be critical to enzymatic activity for WecA  is variously present or absent in the clade that includes Bacillus subtilis TagO teichoic acid biosynthesis enzyme, which may catalyse the same reaction as WecA. ; GO: 0000287 magnesium ion binding, 0016780 phosphotransferase activity for other substituted phosphate groups, 0030145 manganese ion binding, 0009103 lipopolysaccharide biosynthetic process, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=29.60  E-value=28  Score=14.43  Aligned_cols=77  Identities=16%  Similarity=0.185  Sum_probs=40.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf             68724146779999896889999889999999999863002232210267888872012467999998741033057787
Q gi|254780343|r   70 THPFGHQKAEYIAAVVEGLLMTNIALIILYESWHNMSHSPSNDFSIMGLFIGFMANIISLFWGKWLIYSGEKNHSAAFKA  149 (311)
Q Consensus        70 ~~pyG~~r~E~l~~l~~~~~l~~~~~~i~~es~~~l~~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~~~s~~l~a  149 (311)
                      .+|+|+. .+.+=+=.-|.++-+.-++++.|+.|.=-+|+-  .+..++|+..+-+.=+..   ...|+=+|-+|| -++
T Consensus       201 GiplGrk-~KVFMGDAGS~~IGFTViWLLl~~tQg~~~p~~--~PVTALWlIA~PLmDM~a---Im~RR~rkG~SP-FkP  273 (349)
T TIGR02380       201 GIPLGRK-FKVFMGDAGSTLIGFTVIWLLLEATQGESSPSM--RPVTALWLIALPLMDMAA---IMLRRIRKGDSP-FKP  273 (349)
T ss_pred             CCCCCCC-CCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCC--CCHHHHHHHHHHHHHHHH---HHHHHHHCCCCC-CCC
T ss_conf             6634688-603115600157889999998720013665788--740579998614777999---999874277776-977


Q ss_pred             HHHH
Q ss_conf             5998
Q gi|254780343|r  150 NGQH  153 (311)
Q Consensus       150 ~~~~  153 (311)
                      |-.|
T Consensus       274 DR~H  277 (349)
T TIGR02380       274 DREH  277 (349)
T ss_pred             CHHH
T ss_conf             7356


No 68 
>PRK08676 hydrogenase membrane subunit; Validated
Probab=29.51  E-value=35  Score=13.76  Aligned_cols=15  Identities=27%  Similarity=0.406  Sum_probs=5.6

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             599866537887888
Q gi|254780343|r  150 NGQHFVADVVMSAGV  164 (311)
Q Consensus       150 ~~~~~~~D~~~s~~v  164 (311)
                      .-.|..+.++.+.+.
T Consensus       326 al~~~i~H~l~k~~L  340 (486)
T PRK08676        326 ALFHMLAHSLVKAGL  340 (486)
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             999999999999999


No 69 
>TIGR00827 EIIC-GAT PTS system, galactitol-specific IIC component; InterPro: IPR013853 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars.    The only characterised member of this family of PTS transporters is the Escherichia coli galactitol transporter. Gat family PTS systems typically have 3 components: IIA, IIB and IIC.    This family is specific for the IIC component of the PTS Gat family. It contains fewer proteins than IPR004703 from INTERPRO..
Probab=27.38  E-value=39  Score=13.53  Aligned_cols=25  Identities=20%  Similarity=0.333  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf             9999999999877986899996058
Q gi|254780343|r  265 ICNKLERSLEENIGQAIITIHIEPA  289 (311)
Q Consensus       265 i~~~ie~~l~~~~~~~~v~ih~ep~  289 (311)
                      ++|+.|+.++++|+..|+.|=.||+
T Consensus       266 is~~AR~~lqk~FggrE~~IGLD~A  290 (407)
T TIGR00827       266 ISESAREFLQKKFGGREVYIGLDAA  290 (407)
T ss_pred             CHHHHHHHHHHHHCCEEEEEECCHH
T ss_conf             0278899997552880588713345


No 70 
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=26.46  E-value=40  Score=13.42  Aligned_cols=31  Identities=26%  Similarity=0.384  Sum_probs=20.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8668724146779999896889999889999
Q gi|254780343|r   68 DNTHPFGHQKAEYIAAVVEGLLMTNIALIIL   98 (311)
Q Consensus        68 d~~~pyG~~r~E~l~~l~~~~~l~~~~~~i~   98 (311)
                      ..+.+....++|.++..+-.++++++++..+
T Consensus        51 ~~~~~~~~~~LEi~WTiiP~iIl~~ia~pS~   81 (228)
T MTH00076         51 TNTNAMDAQEIEMVWTIMPAIILIVIALPSL   81 (228)
T ss_pred             CCCCCCCCCEEEHHHHHHHHHHHHHHHHHHH
T ss_conf             7787878955302489999999999999999


No 71 
>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase; InterPro: IPR011880    Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA) . Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in Gram-positive prokaryotes . In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions ..
Probab=26.07  E-value=41  Score=13.38  Aligned_cols=109  Identities=11%  Similarity=0.181  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---------------------------HHHHHHHHHHHHHCCCCCC
Q ss_conf             6876689999999999899999989974044555---------------------------1458999998641588831
Q gi|254780343|r  179 LDSIIACFMACNILYQGCKVISSSIKNLMDAAVK---------------------------PEHLEKIKNIIALNASGSI  231 (311)
Q Consensus       179 ~D~i~ai~i~~~i~~~~~~~~~~~~~~Ll~~s~~---------------------------~~~~~~i~~~i~~~~~~V~  231 (311)
                      .|.=-+-++---+-+.+++++|--.+.|.--.|.                           .....+|++.| .+.+...
T Consensus       269 pDGe~GeLvfttLtkeAlPViRYrTrDltrLlp~~~~taRtmrRM~~i~GRsDDmlIiRGVNvFPtq~E~~i-l~~~~~~  347 (431)
T TIGR02155       269 PDGEEGELVFTTLTKEALPVIRYRTRDLTRLLPEQNGTARTMRRMDRITGRSDDMLIIRGVNVFPTQIEEVI-LKMDELS  347 (431)
T ss_pred             CCCCCCEEEEEECCCCCCCEEEECHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHH-HCCCCCC
T ss_conf             888743065410000167554310102656265778888630344114665142677746356867899999-7077878


Q ss_pred             EEEEEEEEEECCEEEEEEEEEECCC---------CCHHHHHHHHHHHHHHHHHHCCCC-EEEEEEECC
Q ss_conf             1515764755790799999998879---------998999999999999999877986-899996058
Q gi|254780343|r  232 GIHDLKIRQAGATFFINFHLVVDSH---------MIVLDAHKICNKLERSLEENIGQA-IITIHIEPA  289 (311)
Q Consensus       232 ~v~~l~~~~~G~~~~v~~~i~v~~~---------~~~~eah~i~~~ie~~l~~~~~~~-~v~ih~ep~  289 (311)
                      -=+.+++.+.|.-=-++++|++.++         ++-.+...+++++++.|+...++. +|.+ .+|.
T Consensus       348 phY~l~l~r~G~lD~lt~~vE~~~E~~~~~~~gdl~h~~~~~l~~~i~~~iK~~~gvs~~v~~-~~Pg  414 (431)
T TIGR02155       348 PHYQLELTREGHLDELTLKVELKPESAALRLHGDLNHEQKSLLAKEIQHQIKAEVGVSVDVHL-VEPG  414 (431)
T ss_pred             CCEEEEEECCCCCCEEEEEEEECHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEE-ECCC
T ss_conf             736899840555523545554122466302355434268999999999986555022216898-2586


No 72 
>PRK10417 nikC nickel transporter permease NikC; Provisional
Probab=25.87  E-value=41  Score=13.35  Aligned_cols=15  Identities=20%  Similarity=0.293  Sum_probs=11.7

Q ss_pred             HCCCCCCCCCCCHHH
Q ss_conf             548998668724146
Q gi|254780343|r   63 AYRPADNTHPFGHQK   77 (311)
Q Consensus        63 s~k~~d~~~pyG~~r   77 (311)
                      ..+||+.+||+|-.+
T Consensus        39 ~~~pPs~~h~lGTD~   53 (272)
T PRK10417         39 RLLSPDAQHWLGTDH   53 (272)
T ss_pred             CCCCCCCCCCCCCCC
T ss_conf             249999666897899


No 73 
>pfam04359 DUF493 Protein of unknown function (DUF493).
Probab=25.45  E-value=42  Score=13.31  Aligned_cols=61  Identities=13%  Similarity=0.186  Sum_probs=35.1

Q ss_pred             HCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEEEE--EEEEEECCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             04455514589999986415888311515764755790799--99999887999899999999999999987
Q gi|254780343|r  207 MDAAVKPEHLEKIKNIIALNASGSIGIHDLKIRQAGATFFI--NFHLVVDSHMIVLDAHKICNKLERSLEEN  276 (311)
Q Consensus       207 l~~s~~~~~~~~i~~~i~~~~~~V~~v~~l~~~~~G~~~~v--~~~i~v~~~~~~~eah~i~~~ie~~l~~~  276 (311)
                      ||.+ .++..+.|.+++..+.|++.+ .++..+.+....|+  ++.+.+...   ++    .+++=+.|++.
T Consensus        21 iG~~-~~~f~~~V~~iv~~h~~~~~~-~~v~~r~Ss~GkY~Svtv~i~a~s~---~q----l~~iy~~L~~~   83 (90)
T pfam04359        21 MGLA-GDELVDAVVEVVQRHAPGFDD-YTPTVKPSSKGKYVSVSVTITATSE---EQ----LEALYQELSAI   83 (90)
T ss_pred             EECC-CHHHHHHHHHHHHHHCCCCCC-CCEEEEECCCCCEEEEEEEEEECCH---HH----HHHHHHHHHCC
T ss_conf             9708-716899999999997799983-3237864689848999999998899---99----99999998319


No 74 
>PRK11027 hypothetical protein; Provisional
Probab=25.04  E-value=26  Score=14.66  Aligned_cols=14  Identities=21%  Similarity=0.403  Sum_probs=11.2

Q ss_pred             CCCCCCCCHHHHHH
Q ss_conf             98668724146779
Q gi|254780343|r   67 ADNTHPFGHQKAEY   80 (311)
Q Consensus        67 ~d~~~pyG~~r~E~   80 (311)
                      .|++||+|+.|--.
T Consensus        13 DdknfPrGF~RsGd   26 (110)
T PRK11027         13 DDKNFPRGFSRSGD   26 (110)
T ss_pred             CCCCCCCCCCCCCC
T ss_conf             56778876441687


No 75 
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=25.02  E-value=42  Score=13.25  Aligned_cols=30  Identities=13%  Similarity=0.233  Sum_probs=17.2

Q ss_pred             HHHHHHHHH-HHHHCCCCCHHHHHHHHHHHH
Q ss_conf             899999989-974044555145899999864
Q gi|254780343|r  195 GCKVISSSI-KNLMDAAVKPEHLEKIKNIIA  224 (311)
Q Consensus       195 ~~~~~~~~~-~~Ll~~s~~~~~~~~i~~~i~  224 (311)
                      +...++|+. +.|-|..|.-++.++.++.++
T Consensus       425 a~~~~~ET~~~pL~g~~~~~~~~~~~~~~~~  455 (490)
T PRK10642        425 TGVTMKETANRPLKGATPAASDIQEAKEILV  455 (490)
T ss_pred             HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             9995642489999999998899899999987


No 76 
>PTZ00046 rifin; Provisional
Probab=24.81  E-value=43  Score=13.23  Aligned_cols=26  Identities=15%  Similarity=0.156  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             46876689999999999899999989
Q gi|254780343|r  178 VLDSIIACFMACNILYQGCKVISSSI  203 (311)
Q Consensus       178 ~~D~i~ai~i~~~i~~~~~~~~~~~~  203 (311)
                      ..-++.+|++-++++..=|-++|--.
T Consensus       307 IiaSiiAIvVIVLIMvIIYLILRYRR  332 (348)
T PTZ00046        307 IIASIVAIVVIVLIMVIIYLILRYRR  332 (348)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999998732


No 77 
>TIGR00368 TIGR00368 Mg chelatase homolog; InterPro: IPR004482   This family of bacterial proteins are variously described as 'hypothetical protein yifB', 'competence protein', 'hypothetical protein' or 'Mg chelatase-related protein'. These proteins are a subset of the magnesium chelatase, ChlI subunit family and either belong to or show significant homology to the non-peptidase homologs of the MEROPS peptidase family S16 (lon protease family, clan SF), IPR001984 from INTERPRO. .
Probab=24.49  E-value=43  Score=13.19  Aligned_cols=35  Identities=20%  Similarity=0.339  Sum_probs=19.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHH---HCCCCEEEEEEECCCCC
Q ss_conf             799989999999999999998---77986899996058876
Q gi|254780343|r  255 SHMIVLDAHKICNKLERSLEE---NIGQAIITIHIEPANEV  292 (311)
Q Consensus       255 ~~~~~~eah~i~~~ie~~l~~---~~~~~~v~ih~ep~~~~  292 (311)
                      |+.+++|+   +|||+.+|++   +||..+++|-.=|++-+
T Consensus        33 p~~~vkEs---reRVksAl~Ns~F~fP~~rI~iNLAPAdl~   70 (505)
T TIGR00368        33 PETTVKES---RERVKSALKNSGFKFPAKRITINLAPADLP   70 (505)
T ss_pred             CCCCHHHH---HHHHHHHHHHCCCCCCCCEEEEECCCCCCC
T ss_conf             86310566---789999986157668854016653888876


No 78 
>pfam06183 DinI DinI-like family. This family of short proteins includes DNA-damage-inducible protein I (DinI) and related proteins. The SOS response, a set of cellular phenomena exhibited by eubacteria, is initiated by various causes that include DNA damage-induced replication arrest, and is positively regulated by the co- protease activity of RecA. Escherichia coli DinI, a LexA-regulated SOS gene product, shuts off the initiation of the SOS response when overexpressed in vivo. Biochemical and genetic studies indicated that DinI physically interacts with RecA to inhibit its co-protease activity. The structure of DinI is known.
Probab=24.43  E-value=44  Score=13.19  Aligned_cols=25  Identities=12%  Similarity=0.135  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHCCCCCCEEEEEEEEEECC
Q ss_conf             58999998641588831151576475579
Q gi|254780343|r  215 HLEKIKNIIALNASGSIGIHDLKIRQAGA  243 (311)
Q Consensus       215 ~~~~i~~~i~~~~~~V~~v~~l~~~~~G~  243 (311)
                      ..+++.+.+....|..    +++++..++
T Consensus         9 l~~EL~kRl~~~fPd~----~V~Vr~~s~   33 (65)
T pfam06183         9 LQNELTKRIQSLYPDT----VVSVRKGSA   33 (65)
T ss_pred             HHHHHHHHHHHHCCCC----EEEEEECCC
T ss_conf             9999999865338995----798710567


No 79 
>pfam11654 DUF2665 Protein of unknown function (DUF2665). Some members in this family are annotated as Non classical export proteins, however no specific function is known.
Probab=24.24  E-value=44  Score=13.16  Aligned_cols=18  Identities=28%  Similarity=0.396  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             246876689999999999
Q gi|254780343|r  177 TVLDSIIACFMACNILYQ  194 (311)
Q Consensus       177 ~~~D~i~ai~i~~~i~~~  194 (311)
                      .++||+.++.++.+-.+.
T Consensus         5 r~~DP~~ai~iG~~sYyl   22 (47)
T pfam11654         5 RTLDPILAISIGVASYYL   22 (47)
T ss_pred             HHHHHHHHHHHHHHHHHH
T ss_conf             100148999998889988


No 80 
>pfam04219 DUF413 Protein of unknown function, DUF.
Probab=24.23  E-value=28  Score=14.38  Aligned_cols=14  Identities=21%  Similarity=0.403  Sum_probs=11.1

Q ss_pred             CCCCCCCCHHHHHH
Q ss_conf             98668724146779
Q gi|254780343|r   67 ADNTHPFGHQKAEY   80 (311)
Q Consensus        67 ~d~~~pyG~~r~E~   80 (311)
                      .|++||+|+.|--.
T Consensus         4 D~~nfPrGF~RsGd   17 (94)
T pfam04219         4 DDKNFPRGFSRSGD   17 (94)
T ss_pred             CCCCCCCCCCCCCC
T ss_conf             67878886452787


No 81 
>COG0390 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=24.20  E-value=44  Score=13.16  Aligned_cols=18  Identities=11%  Similarity=-0.116  Sum_probs=6.7

Q ss_pred             CHHHHHHHHHHHHHHHHH
Q ss_conf             057787599866537887
Q gi|254780343|r  144 SAAFKANGQHFVADVVMS  161 (311)
Q Consensus       144 s~~l~a~~~~~~~D~~~s  161 (311)
                      |+.....++....+...|
T Consensus        86 ~k~~~~~f~~~flai~~s  103 (256)
T COG0390          86 SKKILKLFILVFLAIFVS  103 (256)
T ss_pred             HHHHHHHHHHHHHHHHHH
T ss_conf             365212588999999898


No 82 
>PRK12704 phosphodiesterase; Provisional
Probab=23.98  E-value=44  Score=13.13  Aligned_cols=64  Identities=25%  Similarity=0.323  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHCCCCCCEEEEEEEEEECCEEEEEEEEEECCC-CCHHHHHHHHHHHHHHHHHH--CCC-CEEEEEEE
Q ss_conf             89999986415888311515764755790799999998879-99899999999999999987--798-68999960
Q gi|254780343|r  216 LEKIKNIIALNASGSIGIHDLKIRQAGATFFINFHLVVDSH-MIVLDAHKICNKLERSLEEN--IGQ-AIITIHIE  287 (311)
Q Consensus       216 ~~~i~~~i~~~~~~V~~v~~l~~~~~G~~~~v~~~i~v~~~-~~~~eah~i~~~ie~~l~~~--~~~-~~v~ih~e  287 (311)
                      ++++++ ++..++||...+-+   +.|..+    .|.|+|+ .+=.+++.++.++.+.|++.  ||. ..|||==|
T Consensus       380 l~~lE~-ia~~~~gV~~~yai---qaGREv----RV~V~p~~v~D~~~~~la~~Ia~~Ie~e~~yPG~IkvtviRe  447 (455)
T PRK12704        380 LEKLEE-IAESFEGVEKAYAI---QAGREI----RVIVKPDLVDDLQAVLLARDIAKKIEEELQYPGQIKVTVIRE  447 (455)
T ss_pred             HHHHHH-HHHCCCCHHHHHHH---HCCCEE----EEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEE
T ss_conf             999999-98359857888877---439769----999786767848899999999999997383997379999864


No 83 
>TIGR01478 STEVOR variant surface antigen, stevor family; InterPro: IPR006374   Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see .   This entry represents the stevor (short for "subtelomeric variable open reading frame") family of predicted variant surface antigens. This is the third largest variant surface antigen family in P. falciparum, with 33 genes identified in the genome of this parasite . The function of these proteins is not known, but they are expressed during several stages of the parasite life-cycle and may play a variety of roles in parasite survival and infection ..
Probab=23.92  E-value=45  Score=13.12  Aligned_cols=100  Identities=15%  Similarity=0.107  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH-HHH-H
Q ss_conf             999999999999999-9972799999999999999999999999999548998668724146779999896889-999-8
Q gi|254780343|r   17 IPISAAITALKIIAW-YVTGFISLLSDGLESIVNIITAIISYFTLKYAYRPADNTHPFGHQKAEYIAAVVEGLL-MTN-I   93 (311)
Q Consensus        17 ~~~n~~~~~~k~~~g-~~t~S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~~~-l~~-~   93 (311)
                      ++.+++++.++..|- ..+||.+..+.  ..+...++.+=.++..                -+|  .+.+.|.. +.. +
T Consensus       197 ll~~~Gi~aA~tAA~e~~~g~~s~~i~--~~~~~~l~g~nff~~~----------------SlE--sa~~t~~~t~~~lm  256 (315)
T TIGR01478       197 LLGLIGIAAAKTAAIEAIIGSYSLDIA--NKCTKALAGINFFFLS----------------SLE--SALKTAVGTIVSLM  256 (315)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH----------------HHH--HHHHHHHHHHHHHH
T ss_conf             998888999879998888763015788--8999999999999788----------------999--99987345775365


Q ss_pred             HHHHHHH----HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             8999999----99998630022322102678888720124679999987410
Q gi|254780343|r   94 ALIILYE----SWHNMSHSPSNDFSIMGLFIGFMANIISLFWGKWLIYSGEK  141 (311)
Q Consensus        94 ~~~i~~e----s~~~l~~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~  141 (311)
                      |.+--.+    +...+|.|     =+++++|.++-.++-..++.|++|+.|+
T Consensus       257 ga~~~~~~~a~~~~Stf~P-----yGIAAlVLi~L~V~LIiLYIWLYrRRK~  303 (315)
T TIGR01478       257 GAADEAESAASAATSTFLP-----YGIAALVLIILTVVLIILYIWLYRRRKK  303 (315)
T ss_pred             HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf             3246665578888878613-----5899999999999999998888564030


No 84 
>pfam07444 Ycf66_N Ycf66 protein N-terminus. This family represents the N-terminus (approximately 80 residues) of Ycf66, a protein that seems to be restricted to eukaryotes that contain chloroplasts and to cyanobacteria.
Probab=23.55  E-value=45  Score=13.08  Aligned_cols=43  Identities=23%  Similarity=0.439  Sum_probs=21.3

Q ss_pred             HHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHHH---HHHHHHHHHHH
Q ss_conf             86653788-78888877653027722468766899---99999999899
Q gi|254780343|r  153 HFVADVVM-SAGVLCGLLLVLITEYTVLDSIIACF---MACNILYQGCK  197 (311)
Q Consensus       153 ~~~~D~~~-s~~vii~~~~~~~~~~~~~D~i~ai~---i~~~i~~~~~~  197 (311)
                      |.-.|.+- ++|.+.|.++. +-|| -+||+.-+.   .+...+.-+|.
T Consensus        33 sRd~D~ffs~vGLl~g~IL~-fqgw-RLdPillfgQ~l~~~~~~~f~~e   79 (84)
T pfam07444        33 SRDYDIFFASIGLLCGGILI-FQGW-RLDPILLFGQVLLTGTAIFFAWE   79 (84)
T ss_pred             CCCCCHHHHHHHHHHHHHHH-HHCC-CCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             23410799999999999999-8340-01749999999999999999986


No 85 
>TIGR01477 RIFIN variant surface antigen, rifin family; InterPro: IPR006373   Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see .   This entry represents the rifin family of variant surface antigens, encoded by the rif (short for "repetetive interspersed family") genes. This is the largest variant surface antigen family in P. falciparum, with roughly 150 genes present in the genome of this parasite . The function of these proteins is not yet known, but rifins are strongly immunogenic and high levels of anti-rifin antibodies are correlated with rapid parasite clearance and asymptomatic infections . .
Probab=23.47  E-value=16  Score=15.87  Aligned_cols=24  Identities=21%  Similarity=0.290  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             246876689999999999899999
Q gi|254780343|r  177 TVLDSIIACFMACNILYQGCKVIS  200 (311)
Q Consensus       177 ~~~D~i~ai~i~~~i~~~~~~~~~  200 (311)
                      +.+=+++||+|=++|+..=|-++|
T Consensus       353 ~IiaSiiAIliIVLIMvIIYLILR  376 (395)
T TIGR01477       353 AIIASIIAILIIVLIMVIIYLILR  376 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             899989999999999999999875


No 86 
>pfam01076 Mob_Pre Plasmid recombination enzyme. With some plasmids, recombination can occur in a site specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre. Pre is a plasmid recombination enzyme. This protein is also known as Mob (conjugative mobilisation).
Probab=23.24  E-value=46  Score=13.04  Aligned_cols=63  Identities=17%  Similarity=0.251  Sum_probs=45.1

Q ss_pred             CEEEEEEEEEECC----CCCHHHHHHHHHHHHHHHHHHCCC---CEEEEEEECCCCCCCCCCCCCCHHHH
Q ss_conf             9079999999887----999899999999999999987798---68999960588764555488831456
Q gi|254780343|r  243 ATFFINFHLVVDS----HMIVLDAHKICNKLERSLEENIGQ---AIITIHIEPANEVTHGIHVPLKENKN  305 (311)
Q Consensus       243 ~~~~v~~~i~v~~----~~~~~eah~i~~~ie~~l~~~~~~---~~v~ih~ep~~~~~~~~~~~~~e~~~  305 (311)
                      ....++.-|..+|    .++-++..+-.++.-+-+.++||.   .-.++|.|-..+.-|..-+|..++..
T Consensus        77 aV~~~e~iit~spe~f~~~~~e~~~~~~~~~~~~l~~~~G~~nv~~a~~H~DE~tPH~H~~~vP~~~~~r  146 (196)
T pfam01076        77 AVLANEILITASPDFFKNLTYEEQKEFFETAFKFFEERYGKENILYAVVHLDEATPHMHMGVVPLTEDGR  146 (196)
T ss_pred             CEEEEEEEEECCHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHEEEEEEECCCCCCCEEEEEEEECCCCC
T ss_conf             6899999994798998238999999999999999998658112899998547899833799998647764


No 87 
>TIGR00794 kup potassium uptake protein; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) , yeast (HAK) , and plant (AtKT)  sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0006813 potassium ion transport, 0016020 membrane.
Probab=22.70  E-value=47  Score=12.97  Aligned_cols=68  Identities=21%  Similarity=0.183  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHH----------HHHHHHHH--HHHHCCCCCCCCCCCHHHHHH----HHHHHHHHHHHHHHH
Q ss_conf             99727999999999999999----------99999999--999548998668724146779----999896889999889
Q gi|254780343|r   32 YVTGFISLLSDGLESIVNII----------TAIISYFT--LKYAYRPADNTHPFGHQKAEY----IAAVVEGLLMTNIAL   95 (311)
Q Consensus        32 ~~t~S~allada~~s~~D~~----------~~~~~l~~--~~~s~k~~d~~~pyG~~r~E~----l~~l~~~~~l~~~~~   95 (311)
                      -+||--||+||--|--.-.+          +.+++++|  .++++-|.+-+.||  .+.=|    =+.+...+++..++.
T Consensus       267 SiTGvEamFADlGHF~~~~IqL~~~~~vyP~L~L~Y~GQaAyl~KhPea~~NpF--f~~iPGGln~~~~wP~fi~A~LAa  344 (814)
T TIGR00794       267 SITGVEAMFADLGHFGKLAIQLAFTLFVYPSLILAYIGQAAYLSKHPEAIKNPF--FKAIPGGLNEWVLWPLFIIAILAA  344 (814)
T ss_pred             EECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH--HHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf             202235777543121150677899999999999987414677523840003761--250777777743999999999999


Q ss_pred             HHHHHH
Q ss_conf             999999
Q gi|254780343|r   96 IILYES  101 (311)
Q Consensus        96 ~i~~es  101 (311)
                      .+..||
T Consensus       345 iiASQA  350 (814)
T TIGR00794       345 IIASQA  350 (814)
T ss_pred             HHHHHH
T ss_conf             999999


No 88 
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein; InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane.
Probab=22.69  E-value=47  Score=12.97  Aligned_cols=100  Identities=10%  Similarity=0.043  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHHCCC---CCCCCCCCHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH-------HHHHHCCCC-
Q ss_conf             99999999999995489---9866872414677999989688999988-----9999999999-------863002232-
Q gi|254780343|r   50 IITAIISYFTLKYAYRP---ADNTHPFGHQKAEYIAAVVEGLLMTNIA-----LIILYESWHN-------MSHSPSNDF-  113 (311)
Q Consensus        50 ~~~~~~~l~~~~~s~k~---~d~~~pyG~~r~E~l~~l~~~~~l~~~~-----~~i~~es~~~-------l~~~~~~~~-  113 (311)
                      ..+.++.+++..++.+.   .|++..-..++    .++..++.+++.+     ++..|-++-+       +++-+.-.. 
T Consensus       132 ~lAl~liiiGv~lts~~GqL~~~~~~~~~e~----~N~~Kg~~lLl~sGiF~~GY~~Y~~~a~PmHEAA~~~~vd~~~~~  207 (336)
T TIGR00776       132 LLALILIIIGVYLTSISGQLKDKSAKIKSEE----FNLKKGILLLLVSGIFTIGYLVYVVVAKPMHEAAAALGVDGLSVL  207 (336)
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHH
T ss_conf             9999999999999730212114553211253----542578999999878999999998606626788888245545668


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             2102678888720124679999987410330577875998665
Q gi|254780343|r  114 SIMGLFIGFMANIISLFWGKWLIYSGEKNHSAAFKANGQHFVA  156 (311)
Q Consensus       114 ~~~~~~i~~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~  156 (311)
                      .+..+.+.+.+.+++..  ...+|. .|-++..++||+-+...
T Consensus       208 LPq~iGm~iGg~i~~~~--~~~~RL-Akv~~Ls~kADFs~~k~  247 (336)
T TIGR00776       208 LPQAIGMVIGGIIFNLK--HCFKRL-AKVKDLSLKADFSLAKP  247 (336)
T ss_pred             HHHHHHHHHHHHHHHHH--HHHHHH-HHHHHHHHCCCHHHHHH
T ss_conf             43488887778998756--668877-76653121011122015


No 89 
>COG3548 Predicted integral membrane protein [Function unknown]
Probab=22.06  E-value=48  Score=12.89  Aligned_cols=80  Identities=14%  Similarity=0.148  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH---HHHHHHHHHHHHHHHH
Q ss_conf             9999999999972799999999999999999999999999548998668724146779999---8968899998899999
Q gi|254780343|r   23 ITALKIIAWYVTGFISLLSDGLESIVNIITAIISYFTLKYAYRPADNTHPFGHQKAEYIAA---VVEGLLMTNIALIILY   99 (311)
Q Consensus        23 ~~~~k~~~g~~t~S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r~E~l~~---l~~~~~l~~~~~~i~~   99 (311)
                      +++.|+-.---.|+..-+++-..++.--+-+++.+...|...+       .=++++|.+..   ..+-+.++.+++.=+.
T Consensus        29 ImVLEi~vP~~~~~~~~~~~l~~~l~~Y~lSF~~v~~~W~n~h-------~~f~~ikki~~~i~~~N~i~L~~vsLlPfs  101 (197)
T COG3548          29 IMVLEIKVPKGGGRLQALAELLSSLIIYALSFLVVAIFWFNHH-------RIFGRIKKITGRIIWINFIWLLLVSLLPFS  101 (197)
T ss_pred             HHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             9982002799886377899888999999999999999999999-------999999953611116889999999999877


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999986300
Q gi|254780343|r  100 ESWHNMSHSP  109 (311)
Q Consensus       100 es~~~l~~~~  109 (311)
                      ..+....+++
T Consensus       102 T~~~~~~~~~  111 (197)
T COG3548         102 TAWIGEIHTD  111 (197)
T ss_pred             HHHHHCCCCC
T ss_conf             9987033687


No 90 
>pfam11381 DUF3185 Protein of unknown function (DUF3185). Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=21.29  E-value=50  Score=12.79  Aligned_cols=47  Identities=19%  Similarity=0.181  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHH---HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             9989688999988999---9999999863002232210267888872012
Q gi|254780343|r   82 AAVVEGLLMTNIALII---LYESWHNMSHSPSNDFSIMGLFIGFMANIIS  128 (311)
Q Consensus        82 ~~l~~~~~l~~~~~~i---~~es~~~l~~~~~~~~~~~~~~i~~~~~~v~  128 (311)
                      +-++.|+.++..+...   +-+.+.|.+.+.+.+...+.++-+.++.++.
T Consensus         6 ~Llv~GivLl~~Gy~~~~S~~sq~~r~~TG~~td~t~~~ligG~va~ivG   55 (59)
T pfam11381         6 ALLVLGIVLLYFGYQASDSLGSQATRAFTGSPTDKTMWYLIGGVVAVIVG   55 (59)
T ss_pred             EHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHH
T ss_conf             46986599998621010367788999971999336588876256878622


No 91 
>PRK00907 hypothetical protein; Provisional
Probab=21.29  E-value=50  Score=12.79  Aligned_cols=63  Identities=5%  Similarity=0.133  Sum_probs=40.5

Q ss_pred             HCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             0445551458999998641588831151576475579079999999887999899999999999999987
Q gi|254780343|r  207 MDAAVKPEHLEKIKNIIALNASGSIGIHDLKIRQAGATFFINFHLVVDSHMIVLDAHKICNKLERSLEEN  276 (311)
Q Consensus       207 l~~s~~~~~~~~i~~~i~~~~~~V~~v~~l~~~~~G~~~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~  276 (311)
                      ||. +.+...+.|.++++.+.|.+. -.++..+.+....|+++.+.+... +-++.+    .+-+.|...
T Consensus        23 MG~-a~~~~~~~i~~iv~~~~~~~~-~~~i~~r~SS~GkYisvTi~i~At-SReQlD----~iYraL~~H   85 (92)
T PRK00907         23 MGT-AERGLETELPRLLAATGVELV-QERISWKHSSSGKYVSVRIGFRAE-SREQYD----AAHQALRDH   85 (92)
T ss_pred             HCC-CCCCHHHHHHHHHHHHCCCCC-HHHEEECCCCCCEEEEEEEEEEEC-CHHHHH----HHHHHHHCC
T ss_conf             476-860089999999999577548-525676447898279999999978-899999----999987259


No 92 
>PRK13021 secF preprotein translocase subunit SecF; Reviewed
Probab=21.09  E-value=51  Score=12.77  Aligned_cols=56  Identities=16%  Similarity=0.080  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             378878888877653027722-46876689999999999899999989974044555
Q gi|254780343|r  157 DVVMSAGVLCGLLLVLITEYT-VLDSIIACFMACNILYQGCKVISSSIKNLMDAAVK  212 (311)
Q Consensus       157 D~~~s~~vii~~~~~~~~~~~-~~D~i~ai~i~~~i~~~~~~~~~~~~~~Ll~~s~~  212 (311)
                      ...+|+.++++.+..+++|-. .-|-..+++++..+---.---.-.....+++.+++
T Consensus       230 ti~Ts~Ttll~~~~l~~~Gg~~l~~Fa~~l~iGii~GtySSIfiAspl~~~l~~~~~  286 (297)
T PRK13021        230 TMVTSGTTLMTVGALWIMGGGPLEGFSIAMFIGILTGTFSSISVGTSLPELLGLSPE  286 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf             999989999999999995456789899999998876445299999999999699999


No 93 
>TIGR02876 spore_yqfD sporulation protein YqfD; InterPro: IPR010690   This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown ..
Probab=20.99  E-value=51  Score=12.75  Aligned_cols=34  Identities=15%  Similarity=0.142  Sum_probs=18.8

Q ss_pred             HHH-HHHHHHHHHHCCCCCCEEEEEEEEEECCEEEEEE
Q ss_conf             145-8999998641588831151576475579079999
Q gi|254780343|r  213 PEH-LEKIKNIIALNASGSIGIHDLKIRQAGATFFINF  249 (311)
Q Consensus       213 ~~~-~~~i~~~i~~~~~~V~~v~~l~~~~~G~~~~v~~  249 (311)
                      ..+ .+++++.+..+   +-++--..++--|..+++.+
T Consensus       140 ~~Ds~~~~~~~L~~~---~~ei~Wv~v~~~Gt~l~~kv  174 (406)
T TIGR02876       140 SIDSVYKLERKLLDR---VPEIMWVGVRVRGTKLVIKV  174 (406)
T ss_pred             CCCCHHHHHHHHHHC---CCCEEEEEEEEECCEEEEEE
T ss_conf             688988999999845---99489999998530999999


No 94 
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.72  E-value=52  Score=12.72  Aligned_cols=61  Identities=15%  Similarity=0.282  Sum_probs=41.4

Q ss_pred             CHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEEEEEEEEEECCCC-CHHHHHHHHHHHHHHHHHH
Q ss_conf             5145899999864158883115157647557907999999988799-9899999999999999987
Q gi|254780343|r  212 KPEHLEKIKNIIALNASGSIGIHDLKIRQAGATFFINFHLVVDSHM-IVLDAHKICNKLERSLEEN  276 (311)
Q Consensus       212 ~~~~~~~i~~~i~~~~~~V~~v~~l~~~~~G~~~~v~~~i~v~~~~-~~~eah~i~~~ie~~l~~~  276 (311)
                      .|....++-..+...   -.+|++-|+.+.+++..+|.-.+.|++- .+.+. +-.+++++.|++.
T Consensus        11 r~gLf~~i~~~l~~~---~l~I~~A~I~t~~~g~~~D~F~V~d~~g~~i~~~-~~~~~i~~~L~~~   72 (73)
T cd04900          11 RPGLFARIAGALDQL---GLNILDARIFTTRDGYALDTFVVLDPDGEPIGER-ERLARIREALEDA   72 (73)
T ss_pred             CCCHHHHHHHHHHHC---CCEEEEEEEEECCCCEEEEEEEEECCCCCCCCCH-HHHHHHHHHHHHH
T ss_conf             787899999999988---9859999999858986999999988999979999-9999999999955


Done!