Query gi|254780343|ref|YP_003064756.1| probable cation efflux protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 311 No_of_seqs 153 out of 2479 Neff 8.0 Searched_HMMs 39220 Date Sun May 29 16:13:31 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780343.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 PRK09509 fieF ferrous iron eff 100.0 0 0 474.8 37.5 291 1-293 1-291 (300) 2 COG0053 MMT1 Predicted Co/Zn/C 100.0 0 0 456.3 36.1 298 1-300 3-301 (304) 3 PRK03557 zinc transporter ZitB 100.0 0 0 431.6 32.9 296 6-306 14-311 (312) 4 pfam01545 Cation_efflux Cation 100.0 0 0 381.9 33.9 268 23-292 2-272 (273) 5 COG1230 CzcD Co/Zn/Cd efflux s 100.0 0 0 364.0 31.5 277 6-289 17-294 (296) 6 KOG1485 consensus 100.0 0 0 335.4 27.7 287 8-297 112-406 (412) 7 TIGR01297 CDF cation diffusion 100.0 2.2E-42 0 287.7 33.0 279 10-290 2-293 (294) 8 KOG1482 consensus 100.0 1.7E-42 0 288.5 23.3 291 7-309 69-378 (379) 9 KOG1484 consensus 100.0 2.5E-37 6.3E-42 255.7 25.4 274 10-290 34-348 (354) 10 KOG1483 consensus 100.0 6.7E-38 1.7E-42 259.3 16.7 273 13-290 11-371 (404) 11 COG3965 Predicted Co/Zn/Cd cat 100.0 1.7E-30 4.4E-35 212.3 20.9 277 9-287 18-307 (314) 12 KOG2802 consensus 99.9 1.6E-23 4.1E-28 168.2 14.4 184 11-194 207-406 (503) 13 COG0053 MMT1 Predicted Co/Zn/C 98.4 8E-06 2.1E-10 55.9 11.5 88 12-107 122-209 (304) 14 PRK09509 fieF ferrous iron eff 98.3 1.3E-05 3.3E-10 54.6 11.3 87 122-208 14-107 (300) 15 PRK03557 zinc transporter ZitB 97.8 0.00055 1.4E-08 44.3 10.6 72 137-208 37-115 (312) 16 pfam01545 Cation_efflux Cation 97.3 0.01 2.7E-07 36.1 12.0 67 36-109 124-190 (273) 17 COG1230 CzcD Co/Zn/Cd efflux s 97.2 0.0071 1.8E-07 37.2 10.5 86 126-211 29-121 (296) 18 KOG1485 consensus 97.2 0.0079 2E-07 36.9 10.4 91 118-208 114-211 (412) 19 TIGR01297 CDF cation diffusion 96.3 0.085 2.2E-06 30.4 12.5 96 11-111 112-211 (294) 20 KOG1484 consensus 95.2 0.23 5.9E-06 27.6 10.1 88 122-209 38-132 (354) 21 COG4956 Integral membrane prot 93.9 0.46 1.2E-05 25.7 12.3 145 118-267 45-203 (356) 22 COG4858 Uncharacterized membra 93.2 0.61 1.5E-05 25.0 11.7 112 84-198 96-212 (226) 23 PRK10263 DNA translocase FtsK; 85.1 2.7 6.8E-05 20.9 15.3 49 147-195 150-203 (1355) 24 PRK10019 nickel/cobalt efflux 82.0 3.6 9.1E-05 20.1 6.8 43 55-104 70-112 (278) 25 TIGR00930 2a30 K-Cl cotranspor 77.2 5 0.00013 19.1 11.0 189 70-276 537-754 (1171) 26 PRK10597 DNA damage-inducible 73.9 6.1 0.00016 18.6 5.6 59 248-306 4-62 (81) 27 pfam03780 DUF322 Protein of un 69.3 7.8 0.0002 17.9 8.6 52 236-287 50-105 (108) 28 PRK10568 periplasmic protein; 68.6 8 0.0002 17.8 6.9 75 201-289 86-164 (203) 29 pfam09580 Spore_YhcN_YlaJ Spor 68.1 8.2 0.00021 17.8 7.2 67 216-289 68-135 (169) 30 COG3158 Kup K+ transporter [In 67.0 8.6 0.00022 17.6 4.0 68 32-101 229-308 (627) 31 pfam00873 ACR_tran AcrB/AcrD/A 65.4 9.3 0.00024 17.4 11.7 64 215-280 579-650 (1021) 32 COG1183 PssA Phosphatidylserin 64.9 9.5 0.00024 17.4 8.2 39 20-58 45-83 (234) 33 TIGR00473 pssA CDP-diacylglyce 60.5 11 0.00029 16.9 4.2 50 11-60 28-79 (174) 34 PRK11023 hypothetical protein; 58.1 12 0.00032 16.6 5.8 71 205-287 80-150 (191) 35 PRK10745 trkD potassium transp 57.7 13 0.00032 16.6 6.6 75 25-101 217-303 (622) 36 PRK02983 lysS lysyl-tRNA synth 54.2 14 0.00037 16.2 12.5 44 178-224 205-248 (1099) 37 COG1279 Lysine efflux permease 51.0 16 0.00041 15.9 7.7 61 35-103 33-93 (202) 38 pfam09877 DUF2104 Predicted me 50.4 17 0.00042 15.8 5.1 26 166-191 70-95 (100) 39 pfam06570 DUF1129 Protein of u 49.6 17 0.00044 15.8 13.1 56 82-137 77-135 (206) 40 KOG2877 consensus 48.4 18 0.00045 15.6 7.7 29 34-62 111-139 (389) 41 PRK02047 hypothetical protein; 47.6 18 0.00047 15.6 6.4 56 207-265 22-77 (91) 42 pfam10934 DUF2634 Protein of u 47.6 18 0.00047 15.6 6.0 51 202-253 52-107 (112) 43 pfam02038 ATP1G1_PLM_MAT8 ATP1 46.6 19 0.00048 15.5 3.5 34 67-101 4-37 (51) 44 PRK10054 putative MFS-type tra 45.2 20 0.00051 15.3 20.4 42 180-221 296-337 (395) 45 cd06159 S2P-M50_PDZ_Arch Uncha 42.1 22 0.00057 15.0 10.7 148 74-221 54-243 (263) 46 PRK08238 hypothetical protein; 40.1 24 0.00061 14.8 18.6 33 178-210 423-455 (481) 47 PRK10369 heme lyase subunit Nr 39.2 25 0.00063 14.7 10.7 18 84-101 262-279 (552) 48 PRK11646 multidrug resistance 38.2 26 0.00065 14.7 20.2 44 177-220 292-335 (400) 49 pfam06181 DUF989 Protein of un 36.2 27 0.0007 14.5 7.2 137 75-221 79-221 (299) 50 PRK09977 putative Mg(2+) trans 36.1 28 0.0007 14.4 14.6 59 213-281 153-211 (215) 51 pfam07423 DUF1510 Protein of u 35.6 28 0.00072 14.4 3.4 23 231-253 180-202 (214) 52 COG4035 Predicted membrane pro 35.3 28 0.00072 14.4 3.3 26 165-190 75-100 (108) 53 PRK08601 NADH dehydrogenase su 35.3 28 0.00073 14.4 8.2 32 68-100 215-252 (506) 54 TIGR00538 hemN oxygen-independ 33.5 30 0.00077 14.2 6.3 70 212-292 81-153 (462) 55 TIGR03428 ureacarb_perm permea 32.2 32 0.00081 14.0 10.7 14 200-213 229-242 (475) 56 PRK11152 ilvM acetolactate syn 31.8 32 0.00082 14.0 4.2 66 209-284 10-75 (76) 57 TIGR00900 2A0121 H+ Antiporter 31.7 32 0.00083 14.0 18.3 188 21-223 151-364 (387) 58 cd04869 ACT_GcvR_2 ACT domains 31.1 33 0.00085 13.9 7.6 48 212-262 9-62 (81) 59 PRK11049 D-alanine/D-serine/gl 30.8 34 0.00086 13.9 8.7 44 178-221 293-336 (469) 60 PRK09874 drug efflux system pr 30.7 34 0.00086 13.9 22.1 33 4-36 134-166 (406) 61 PRK11357 frlA putative fructos 30.6 34 0.00086 13.9 11.3 11 79-89 85-95 (445) 62 cd04886 ACT_ThrD-II-like C-ter 30.5 34 0.00087 13.9 6.7 60 212-276 8-67 (73) 63 PRK09881 ATP-dependent peptide 30.3 34 0.00088 13.8 10.8 50 11-77 31-80 (296) 64 pfam03755 YicC_N YicC-like fam 30.3 34 0.00088 13.8 3.9 44 242-290 26-71 (159) 65 pfam02705 K_trans K+ potassium 30.2 34 0.00088 13.8 6.7 67 33-101 253-331 (731) 66 pfam04972 BON Putative phospho 30.0 35 0.00089 13.8 2.5 54 218-282 3-56 (64) 67 TIGR02380 ECA_wecA undecapreny 29.6 28 0.00071 14.4 1.4 77 70-153 201-277 (349) 68 PRK08676 hydrogenase membrane 29.5 35 0.0009 13.8 14.4 15 150-164 326-340 (486) 69 TIGR00827 EIIC-GAT PTS system, 27.4 39 0.00098 13.5 2.5 25 265-289 266-290 (407) 70 MTH00076 COX2 cytochrome c oxi 26.5 40 0.001 13.4 6.0 31 68-98 51-81 (228) 71 TIGR02155 PA_CoA_ligase phenyl 26.1 41 0.001 13.4 8.2 109 179-289 269-414 (431) 72 PRK10417 nikC nickel transport 25.9 41 0.001 13.4 10.3 15 63-77 39-53 (272) 73 pfam04359 DUF493 Protein of un 25.4 42 0.0011 13.3 6.5 61 207-276 21-83 (90) 74 PRK11027 hypothetical protein; 25.0 26 0.00065 14.7 0.5 14 67-80 13-26 (110) 75 PRK10642 proline/glycine betai 25.0 42 0.0011 13.3 15.2 30 195-224 425-455 (490) 76 PTZ00046 rifin; Provisional 24.8 43 0.0011 13.2 1.7 26 178-203 307-332 (348) 77 TIGR00368 TIGR00368 Mg chelata 24.5 43 0.0011 13.2 4.5 35 255-292 33-70 (505) 78 pfam06183 DinI DinI-like famil 24.4 44 0.0011 13.2 3.4 25 215-243 9-33 (65) 79 pfam11654 DUF2665 Protein of u 24.2 44 0.0011 13.2 2.2 18 177-194 5-22 (47) 80 pfam04219 DUF413 Protein of un 24.2 28 0.00072 14.4 0.6 14 67-80 4-17 (94) 81 COG0390 ABC-type uncharacteriz 24.2 44 0.0011 13.2 10.3 18 144-161 86-103 (256) 82 PRK12704 phosphodiesterase; Pr 24.0 44 0.0011 13.1 5.6 64 216-287 380-447 (455) 83 TIGR01478 STEVOR variant surfa 23.9 45 0.0011 13.1 11.7 100 17-141 197-303 (315) 84 pfam07444 Ycf66_N Ycf66 protei 23.6 45 0.0012 13.1 3.4 43 153-197 33-79 (84) 85 TIGR01477 RIFIN variant surfac 23.5 16 0.00042 15.9 -0.7 24 177-200 353-376 (395) 86 pfam01076 Mob_Pre Plasmid reco 23.2 46 0.0012 13.0 7.7 63 243-305 77-146 (196) 87 TIGR00794 kup potassium uptake 22.7 47 0.0012 13.0 10.7 68 32-101 267-350 (814) 88 TIGR00776 RhaT RhaT L-rhamnose 22.7 47 0.0012 13.0 5.8 100 50-156 132-247 (336) 89 COG3548 Predicted integral mem 22.1 48 0.0012 12.9 12.7 80 23-109 29-111 (197) 90 pfam11381 DUF3185 Protein of u 21.3 50 0.0013 12.8 2.4 47 82-128 6-55 (59) 91 PRK00907 hypothetical protein; 21.3 50 0.0013 12.8 6.1 63 207-276 23-85 (92) 92 PRK13021 secF preprotein trans 21.1 51 0.0013 12.8 11.2 56 157-212 230-286 (297) 93 TIGR02876 spore_yqfD sporulati 21.0 51 0.0013 12.8 2.1 34 213-249 140-174 (406) 94 cd04900 ACT_UUR-like_1 ACT dom 20.7 52 0.0013 12.7 7.0 61 212-276 11-72 (73) No 1 >PRK09509 fieF ferrous iron efflux protein F; Reviewed Probab=100.00 E-value=0 Score=474.78 Aligned_cols=291 Identities=26% Similarity=0.454 Sum_probs=277.7 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH Q ss_conf 98536788999999999999999999999999972799999999999999999999999999548998668724146779 Q gi|254780343|r 1 MKVDDQNNMIRMALWGIPISAAITALKIIAWYVTGFISLLSDGLESIVNIITAIISYFTLKYAYRPADNTHPFGHQKAEY 80 (311) Q Consensus 1 m~~~~~~~~~r~~~~~~~~n~~~~~~k~~~g~~t~S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r~E~ 80 (311) |..+..+...|.+++++.+|++++++|+++|++|||.||+|||+||+.|++++++.+++.|.++||||++|||||+|+|+ T Consensus 1 ~~~~~~~~~~raa~~si~~n~~L~i~K~~~g~~sgS~AllADa~hSl~D~~s~~~~l~~~~~s~kp~d~~hPyGhgR~E~ 80 (300) T PRK09509 1 MNQSYARLVSRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIAASLTNLLVVRYSLQPADDEHTFGHGKAES 80 (300) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH T ss_conf 97489999999999999999999999999999945099999899999999999999999999659997779970878999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH Q ss_conf 99989688999988999999999986300223221026788887201246799999874103305778759986653788 Q gi|254780343|r 81 IAAVVEGLLMTNIALIILYESWHNMSHSPSNDFSIMGLFIGFMANIISLFWGKWLIYSGEKNHSAAFKANGQHFVADVVM 160 (311) Q Consensus 81 l~~l~~~~~l~~~~~~i~~es~~~l~~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~ 160 (311) +++++.++++++.++++++|+++++++|++...+.+++++++++.+++.++++|..+.+++.+|++++|+++|+++|+++ T Consensus 81 l~al~~~i~i~~~~~~i~~esi~~l~~p~~~~~~~~~i~v~~~~iv~~~~l~~~~~~~~~~~~S~~l~A~a~h~~sD~~~ 160 (300) T PRK09509 81 LAALAQSMFISGSALFLFLTGIQHLISPTPMNDPGVGVGVTLVALICTIILVTFQRWVVRKTQSQAVRADMLHYQSDVMM 160 (300) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999846986466544899999999999999999999986514757677777899989997 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEE Q ss_conf 78888877653027722468766899999999998999999899740445551458999998641588831151576475 Q gi|254780343|r 161 SAGVLCGLLLVLITEYTVLDSIIACFMACNILYQGCKVISSSIKNLMDAAVKPEHLEKIKNIIALNASGSIGIHDLKIRQ 240 (311) Q Consensus 161 s~~vii~~~~~~~~~~~~~D~i~ai~i~~~i~~~~~~~~~~~~~~Ll~~s~~~~~~~~i~~~i~~~~~~V~~v~~l~~~~ 240 (311) |+++++|+++.++ ||+|+||+++++++++|++.++++++++.+.|+|+++|+++.++|++.+ ++.|||.++|++|+|+ T Consensus 161 s~~vlig~~~~~~-g~~~~D~i~aliIs~~I~~~~~~l~~es~~~Lld~~~~~e~~~~I~~~i-~~~~gV~~vh~lr~r~ 238 (300) T PRK09509 161 NGAILLALGLSWY-GWHRADALFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDIV-TSWPGVSGAHDLRTRQ 238 (300) T ss_pred HHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH-HCCCCCCCCEEEEEEE T ss_conf 0099999999995-8325758999999999999999999999999857799989999999999-7288987702689898 Q ss_pred ECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCC Q ss_conf 57907999999988799989999999999999998779868999960588764 Q gi|254780343|r 241 AGATFFINFHLVVDSHMIVLDAHKICNKLERSLEENIGQAIITIHIEPANEVT 293 (311) Q Consensus 241 ~G~~~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~~~~~~v~ih~ep~~~~~ 293 (311) +|++.++|+|+++|+++|+.|+|+|.+++|+++++++|..+++||+|||+..+ T Consensus 239 ~G~~~~vd~hI~v~~~lsv~eaH~I~~~ve~~i~~~~~~~~v~IH~eP~~~~~ 291 (300) T PRK09509 239 SGPTRFIQLHLEMEDNLPLVQAHMVADQVEQALLRRFPGSDVIIHQDPCSVVP 291 (300) T ss_pred ECCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC T ss_conf 58929999999989799899999999999999997679981899869998882 No 2 >COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism] Probab=100.00 E-value=0 Score=456.29 Aligned_cols=298 Identities=31% Similarity=0.524 Sum_probs=285.3 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH Q ss_conf 98536788999999999999999999999999972799999999999999999999999999548998668724146779 Q gi|254780343|r 1 MKVDDQNNMIRMALWGIPISAAITALKIIAWYVTGFISLLSDGLESIVNIITAIISYFTLKYAYRPADNTHPFGHQKAEY 80 (311) Q Consensus 1 m~~~~~~~~~r~~~~~~~~n~~~~~~k~~~g~~t~S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r~E~ 80 (311) |+.++.+...|.+++++..|+++++.|+++|+++||.||+||++||+.|++++++.++++|+|+||||++|||||+|+|+ T Consensus 3 ~~~~~~~~~~~~~~~sl~~nl~l~~~K~~~g~~~gS~ALlADaihs~~D~~~si~~l~~l~~s~kp~d~~HpyGh~k~E~ 82 (304) T COG0053 3 MEEERLKLVRRAALISLAVNLALALLKLIAGILTGSVALLADAIHSLSDIVASLIVLIGLRISSKPPDRDHPYGHGKAET 82 (304) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH T ss_conf 40777999999999999999999999999984036599999999889999999999999999559997779983277999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH Q ss_conf 99989688999988999999999986300223221026788887201246799999874103305778759986653788 Q gi|254780343|r 81 IAAVVEGLLMTNIALIILYESWHNMSHSPSNDFSIMGLFIGFMANIISLFWGKWLIYSGEKNHSAAFKANGQHFVADVVM 160 (311) Q Consensus 81 l~~l~~~~~l~~~~~~i~~es~~~l~~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~ 160 (311) +++++.+++++++|++++++++.++++|++++...+++++++++.+++.++++|.++.++|.+|+++.|+++|+++|+++ T Consensus 83 l~sl~~~~~i~~~g~~i~~~a~~~~~~~~~~~~~~~~~~v~l~s~~~~~~l~~~~~~~~kk~~S~aL~Ada~h~~sD~~t 162 (304) T COG0053 83 LASLIVSILIFAAGFEILLEAIKRLISPQPVEPPLLALGVALISIVIKEALYRYLRRVGKKTNSQALIADALHHRSDVLT 162 (304) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999981677788517899999999999999999999999982889889656888729999 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEE Q ss_conf 78888877653027722468766899999999998999999899740445551458999998641588831151576475 Q gi|254780343|r 161 SAGVLCGLLLVLITEYTVLDSIIACFMACNILYQGCKVISSSIKNLMDAAVKPEHLEKIKNIIALNASGSIGIHDLKIRQ 240 (311) Q Consensus 161 s~~vii~~~~~~~~~~~~~D~i~ai~i~~~i~~~~~~~~~~~~~~Ll~~s~~~~~~~~i~~~i~~~~~~V~~v~~l~~~~ 240 (311) |+++++|++ ..++||+|+||+++++|+++|++.+++++|++.+.|+|+++|+++.+++++++ .+.|+|.++|++|+|+ T Consensus 163 s~~~lvgl~-~~~~g~~~lD~i~a~~I~~~Il~~~~~~~~~s~~~L~d~~~~~~~~~~i~~~i-~~~~~V~~v~~lr~R~ 240 (304) T COG0053 163 SLAVLVGLL-GSLLGWPWLDPLAALLISLYILKTGFRLFKESVNELMDAALDPEDLEKIRAII-LSVPGVKGVHDLRTRK 240 (304) T ss_pred HHHHHHHHH-HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH-HCCCCCCCCHHEEEEE T ss_conf 999999999-99928398989999999999999999999999999847689989999999998-4664552301015666 Q ss_pred ECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCC-CCEEEEEEECCCCCCCCCCCCC Q ss_conf 57907999999988799989999999999999998779-8689999605887645554888 Q gi|254780343|r 241 AGATFFINFHLVVDSHMIVLDAHKICNKLERSLEENIG-QAIITIHIEPANEVTHGIHVPL 300 (311) Q Consensus 241 ~G~~~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~~~-~~~v~ih~ep~~~~~~~~~~~~ 300 (311) .|+..++++|+++||+++++|+|+|++++|+++++.+| +.+++||+||+.+..+..+... T Consensus 241 ~G~~~~id~~i~v~~~ls~~eah~I~~~ie~~i~~~~~~~~~v~IhveP~~~~~~~~~~~~ 301 (304) T COG0053 241 SGSRIFIDVHIEVDPDLSLEEAHEIADEVEKRIKKEFPKVADVTIHVEPLGEKEEEKEREE 301 (304) T ss_pred ECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCC T ss_conf 5887999999971999988889999999999999756877528999556752002223355 No 3 >PRK03557 zinc transporter ZitB; Provisional Probab=100.00 E-value=0 Score=431.63 Aligned_cols=296 Identities=17% Similarity=0.349 Sum_probs=265.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 78899999999999999999999999997279999999999999999999999999954899866872414677999989 Q gi|254780343|r 6 QNNMIRMALWGIPISAAITALKIIAWYVTGFISLLSDGLESIVNIITAIISYFTLKYAYRPADNTHPFGHQKAEYIAAVV 85 (311) Q Consensus 6 ~~~~~r~~~~~~~~n~~~~~~k~~~g~~t~S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~ 85 (311) +++..|+.++++++|++++++|+++|+++||+||+|||+||+.|+++.++++++.|+++||||++|||||+|+|.+++++ T Consensus 14 ~~~~~rrl~~a~~l~~~~~v~eii~G~~s~SlALlaDa~H~l~D~~~~~i~l~a~~~a~kp~d~~~tyG~~R~E~laAl~ 93 (312) T PRK03557 14 EDNNARRLLYAFGVTAGFMLVEVVGGFLSGSLALLADAGHMLTDAAALLFALLAVQFSRRPPTIRHTFGWLRLTTLAAFV 93 (312) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH T ss_conf 77663277999999999999999999984149999999999989999999999999975899865785399999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 68899998899999999998630022322102678888720124679999987410330577875998665378878888 Q gi|254780343|r 86 EGLLMTNIALIILYESWHNMSHSPSNDFSIMGLFIGFMANIISLFWGKWLIYSGEKNHSAAFKANGQHFVADVVMSAGVL 165 (311) Q Consensus 86 ~~~~l~~~~~~i~~es~~~l~~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vi 165 (311) ++++++++++++++||++|+++|+++... ..++++++++++|.+.+ +..+.+++.+|.+++|+++|.++|+++|++++ T Consensus 94 ~~i~L~~~~~~i~~eai~rl~~p~~i~~~-~~l~va~~gl~~n~~~~-~~l~~g~~~~s~nl~Aa~lH~~~D~l~Svgvi 171 (312) T PRK03557 94 NAIALVVITILIVWEAIERFRTPRPVAGG-MMMAIAVAGLLANIFSF-WILHHGSEEKNLNVRAAALHVLGDLLGSVGAI 171 (312) T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCC-HHHHHHHHHHHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999984798777760-36999999999999999-99772244588899999999997899999999 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEE Q ss_conf 87765302772246876689999999999899999989974044555145899999864158883115157647557907 Q gi|254780343|r 166 CGLLLVLITEYTVLDSIIACFMACNILYQGCKVISSSIKNLMDAAVKPEHLEKIKNIIALNASGSIGIHDLKIRQAGATF 245 (311) Q Consensus 166 i~~~~~~~~~~~~~D~i~ai~i~~~i~~~~~~~~~~~~~~Ll~~s~~~~~~~~i~~~i~~~~~~V~~v~~l~~~~~G~~~ 245 (311) ++.++.+++||+|+||+++++++++|++++++++|++.+.|||++|+..+.+++++.+.++.|||.++||+|+|+.|++. T Consensus 172 ia~i~i~~~g~~~~Dpi~si~Ia~~Il~sa~~llr~s~~iLld~~P~~i~~~~i~~~i~~~i~gV~~vHdlhvW~~g~~~ 251 (312) T PRK03557 172 IAALIIIWTGWTPADPILSILVSVLVLRSAWRLLKDSVNELLEGAPVSLDINELKRRLCREIPEVRNVHHVHVWMVGEKP 251 (312) T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCEEEEEEEEEEECCCE T ss_conf 99999998098502479889999999998999999999999826999899999999998608983111245750677851 Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEE--CCCCCCCCCCCCCCHHHHH Q ss_conf 999999988799989999999999999998779868999960--5887645554888314565 Q gi|254780343|r 246 FINFHLVVDSHMIVLDAHKICNKLERSLEENIGQAIITIHIE--PANEVTHGIHVPLKENKNQ 306 (311) Q Consensus 246 ~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~~~~~~v~ih~e--p~~~~~~~~~~~~~e~~~~ 306 (311) ++++|+++++. .+.+++.+++|+.++++|++.++|||+| ||..++..+...-+++.+| T Consensus 252 ~~~~Hv~v~~~---~~~~~i~~~i~~~l~~~~gI~h~TIq~E~~~c~~~~c~~~~~~~~~~h~ 311 (312) T PRK03557 252 VMTLHVQVIPP---HDHDALLDRIQDYLMHHYQIEHATIQMEYQPCHGPDCHLNQGVSGHSHH 311 (312) T ss_pred EEEEEEEECCC---CCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC T ss_conf 59999996898---8999999999999998569984799413787898755345698767789 No 4 >pfam01545 Cation_efflux Cation efflux family. Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are thought to be efflux pumps that remove these ions from cells. Probab=100.00 E-value=0 Score=381.85 Aligned_cols=268 Identities=32% Similarity=0.604 Sum_probs=253.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999727999999999999999999999999995489986687241467799998968899998899999999 Q gi|254780343|r 23 ITALKIIAWYVTGFISLLSDGLESIVNIITAIISYFTLKYAYRPADNTHPFGHQKAEYIAAVVEGLLMTNIALIILYESW 102 (311) Q Consensus 23 ~~~~k~~~g~~t~S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~i~~es~ 102 (311) +++.|+++|++|||.||++|++||+.|++++++++++.+.++||||++|||||+|+|+++++++++++++++++++++++ T Consensus 2 l~~~~~~~~~~t~S~allada~~sl~D~~~~~~~l~~~~~~~k~~~~~~pfG~~r~E~l~~l~~~i~l~~~~~~~~~~si 81 (273) T pfam01545 2 LALAKLAAGLLTGSLALLADALHSLIDLLSSLLALLALRLSSRPPDKRHPFGHGRLEVLAALIVSLLLLGVGVFILYESI 81 (273) T ss_pred EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 24178899998523999999999999999999999999996599977799708889899999999999999999999999 Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH Q ss_conf 99863002232210267888872012467999998741033--0577875998665378878888877653027722468 Q gi|254780343|r 103 HNMSHSPSNDFSIMGLFIGFMANIISLFWGKWLIYSGEKNH--SAAFKANGQHFVADVVMSAGVLCGLLLVLITEYTVLD 180 (311) Q Consensus 103 ~~l~~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~~~--s~~l~a~~~~~~~D~~~s~~vii~~~~~~~~~~~~~D 180 (311) +++++|++.+...+.+ +.+++.+++.+.+++.++.+++.+ |++++++++|+++|.++|++++++.++.++++++|+| T Consensus 82 ~~l~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~~~~~~~~~~~~~~~~~D 160 (273) T pfam01545 82 ERLISPEEIEPPGILL-LALISLVVNLLLALYLRRAGRKIGSKSPALRADALHALVDVLGSLAVLIGLLLILLTGLYIAD 160 (273) T ss_pred HHHHHCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH T ss_conf 9998266776137899-999999999999999998755147899899999999999999998999999999971967777 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHH Q ss_conf 76689999999999899999989974044555145899999864158883115157647557907999999988799989 Q gi|254780343|r 181 SIIACFMACNILYQGCKVISSSIKNLMDAAVKPEHLEKIKNIIALNASGSIGIHDLKIRQAGATFFINFHLVVDSHMIVL 260 (311) Q Consensus 181 ~i~ai~i~~~i~~~~~~~~~~~~~~Ll~~s~~~~~~~~i~~~i~~~~~~V~~v~~l~~~~~G~~~~v~~~i~v~~~~~~~ 260 (311) |++++++++++++.+++++|++..+|+|++|+++..+++++.+. +.++|.++|++|+|+.|++.++++|+++|+++|++ T Consensus 161 ~i~~iii~~~ii~~~~~~~~~s~~~Ll~~~~~~~~~~~i~~~i~-~~~~v~~v~~~~~~~~G~~~~v~v~i~v~~~~~~~ 239 (273) T pfam01545 161 PLASLLIALLILYTGLRLLKESLSELLGASPDPELVDKIRKALE-ALPGVLGVHDLRVWKSGPTLLVEIHIEVDPDLTVE 239 (273) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-CCCCCEEEEEEEEEEECCCEEEEEEEEECCCCCHH T ss_conf 89999999999999999999999999677998678999999996-38995034357999968959999999989999899 Q ss_pred HHHHHHHHHHHHHHHHCC-CCEEEEEEECCCCC Q ss_conf 999999999999998779-86899996058876 Q gi|254780343|r 261 DAHKICNKLERSLEENIG-QAIITIHIEPANEV 292 (311) Q Consensus 261 eah~i~~~ie~~l~~~~~-~~~v~ih~ep~~~~ 292 (311) |+|++++++|+.+++++| +.+++||+||+++. T Consensus 240 ~~~~i~~~i~~~l~~~~~~i~~~~i~~~~~~~~ 272 (273) T pfam01545 240 EAHEIADEIEKALKEKFPGIVHVTIHVEPAPEV 272 (273) T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC T ss_conf 999999999999998689988699981599988 No 5 >COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism] Probab=100.00 E-value=0 Score=363.97 Aligned_cols=277 Identities=22% Similarity=0.377 Sum_probs=256.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 78899999999999999999999999997279999999999999999999999999954899866872414677999989 Q gi|254780343|r 6 QNNMIRMALWGIPISAAITALKIIAWYVTGFISLLSDGLESIVNIITAIISYFTLKYAYRPADNTHPFGHQKAEYIAAVV 85 (311) Q Consensus 6 ~~~~~r~~~~~~~~n~~~~~~k~~~g~~t~S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~ 85 (311) +.+..|..++++.+|..++++|+++|++|||+||+||+.|++.|+++.++++++.++++||++++|||||+|+|.+++++ T Consensus 17 ~~~~~r~l~~~~~L~~~f~~iE~i~g~~s~SlaLLADa~Hml~D~~al~lal~A~~~a~r~~~~~~TfGy~R~eiLaa~~ 96 (296) T COG1230 17 NPRNERRLLIALLLNLAFMLIEIIGGLLTGSLALLADALHMLSDALALLLALIAIKLARRPATKRFTFGYKRLEILAAFL 96 (296) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH T ss_conf 30578899999999999999999999996569999737778899999999999999841777787773076899999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 68899998899999999998630022322102678888720124679999987410330577875998665378878888 Q gi|254780343|r 86 EGLLMTNIALIILYESWHNMSHSPSNDFSIMGLFIGFMANIISLFWGKWLIYSGEKNHSAAFKANGQHFVADVVMSAGVL 165 (311) Q Consensus 86 ~~~~l~~~~~~i~~es~~~l~~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vi 165 (311) ++++++..++++++|+++|+++|++++. ...++++++++++|.+.++.+.+. +.+|.|+++.++|.++|+++|++++ T Consensus 97 nav~Li~~s~~I~~EAi~R~~~P~~i~~-~~ml~va~~GL~vN~~~a~ll~~~--~~~~lN~r~a~LHvl~D~Lgsv~vI 173 (296) T COG1230 97 NALLLIVVSLLILWEAIQRLLAPPPIHY-SGMLVVAIIGLVVNLVSALLLHKG--HEENLNMRGAYLHVLGDALGSVGVI 173 (296) T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999648888886-145999999999999999996078--7434037789999999999779999 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEECC-E Q ss_conf 877653027722468766899999999998999999899740445551458999998641588831151576475579-0 Q gi|254780343|r 166 CGLLLVLITEYTVLDSIIACFMACNILYQGCKVISSSIKNLMDAAVKPEHLEKIKNIIALNASGSIGIHDLKIRQAGA-T 244 (311) Q Consensus 166 i~~~~~~~~~~~~~D~i~ai~i~~~i~~~~~~~~~~~~~~Ll~~s~~~~~~~~i~~~i~~~~~~V~~v~~l~~~~~G~-~ 244 (311) ++.+++++++|+|+||+.+++++++++..+++++|++.+.|++.+|+..+.+++++.+. +.|||.++||+|+|+.++ . T Consensus 174 ia~i~i~~~~w~~~Dpi~si~i~~lil~~a~~l~k~s~~iLle~~P~~id~~~~~~~l~-~~~~v~~vhdlHvWsi~~~~ 252 (296) T COG1230 174 IAAIVIRFTGWSWLDPILSIVIALLILSSAWPLLKESLNILLEGVPEGIDIDKVREALL-RIPGVASVHDLHVWSITGGE 252 (296) T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH-CCCCCCCEEECCCCCCCCCC T ss_conf 99999999388766569999999999997999999999998605998668899999985-59974111234537789984 Q ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECC Q ss_conf 799999998879998999999999999999877986899996058 Q gi|254780343|r 245 FFINFHLVVDSHMIVLDAHKICNKLERSLEENIGQAIITIHIEPA 289 (311) Q Consensus 245 ~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~~~~~~v~ih~ep~ 289 (311) ...++|+++++..+-+ .+.+++++.+.++|++.|+|||+|+. T Consensus 253 ~~~t~Hv~v~~~~~~~---~~~~~~~~~l~~~~~I~hvTiQ~e~~ 294 (296) T COG1230 253 HALTLHVVVDEVADAD---AALDQIVRRLLEKYGIEHVTIQLETE 294 (296) T ss_pred EEEEEEEEECCCCCHH---HHHHHHHHHHHHHCCCCEEEEEECCC T ss_conf 3689999825766668---88999999986643963699872478 No 6 >KOG1485 consensus Probab=100.00 E-value=0 Score=335.40 Aligned_cols=287 Identities=21% Similarity=0.307 Sum_probs=250.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 89999999999999999999999999727999999999999999999999999995489986687241467799998968 Q gi|254780343|r 8 NMIRMALWGIPISAAITALKIIAWYVTGFISLLSDGLESIVNIITAIISYFTLKYAYRPADNTHPFGHQKAEYIAAVVEG 87 (311) Q Consensus 8 ~~~r~~~~~~~~n~~~~~~k~~~g~~t~S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~ 87 (311) ...|.++++++.|++++++|+++|+.+||+|++||++||+.|+++.++.+++.+.++|||+.+||||++|+|+++.+..+ T Consensus 112 ~~~~~~~i~l~~Nigl~vaK~~as~~sgS~aIiAsavdSl~Dl~s~fvll~s~~~~~k~~~~~YP~G~~r~EtvG~i~~S 191 (412) T KOG1485 112 AERRAAWIGLAANIGLAVAKVVASYLSGSMAIIASAVDSLSDLVSGFVLLFSLRAAKKKPTYEYPRGRGRVETVGLIAVS 191 (412) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCHHHHHHH T ss_conf 79999999999999999999988884120999998999999999999999999986389821188987752001299999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCC-------C-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH Q ss_conf 899998899999999998630022-------3-22102678888720124679999987410330577875998665378 Q gi|254780343|r 88 LLMTNIALIILYESWHNMSHSPSN-------D-FSIMGLFIGFMANIISLFWGKWLIYSGEKNHSAAFKANGQHFVADVV 159 (311) Q Consensus 88 ~~l~~~~~~i~~es~~~l~~~~~~-------~-~~~~~~~i~~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~ 159 (311) .+|..+|..++++|..++..|... + ....++++.++......+.++..++.+++.+|..++|.+||+|+|++ T Consensus 192 ~iMa~agv~ii~sSl~~i~~~~~~~~~~~~~q~~~~~a~~~i~i~is~~~vk~~l~~~c~~~~ns~iv~a~A~dHr~D~l 271 (412) T KOG1485 192 VIMAMAGVQIIWSSLRLIVGPHAIGHHHNPSQLIFINALWLIAIMISAKEVKLRLTLYCAIKTNSNIVRANAWDHRNDVL 271 (412) T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCHHHHHEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH T ss_conf 99999988999986786514321200158566414300203100026888999999998873682789999888776898 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEE Q ss_conf 87888887765302772246876689999999999899999989974044555145899999864158883115157647 Q gi|254780343|r 160 MSAGVLCGLLLVLITEYTVLDSIIACFMACNILYQGCKVISSSIKNLMDAAVKPEHLEKIKNIIALNASGSIGIHDLKIR 239 (311) Q Consensus 160 ~s~~vii~~~~~~~~~~~~~D~i~ai~i~~~i~~~~~~~~~~~~~~Ll~~s~~~~~~~~i~~~i~~~~~~V~~v~~l~~~ 239 (311) ++..++++..+.++. |+|+||+++++++.+++++|.+...+++.+|+|++++|+.++++...+-.+.+.+..++.++.+ T Consensus 272 Tn~vaLva~~la~~~-~~~lDP~gailVS~~ii~t~~~t~~~~i~~Lvg~~a~pe~L~~~~~~~l~~~~~i~~idtv~~y 350 (412) T KOG1485 272 TNSVALVAASLAYYY-NYWLDPIGAILVSTYIIYTGGRTGLENIKELVGRSAPPEYLEIITYLILQHGKLIKHIDTVRAY 350 (412) T ss_pred HHHHHHHHHHHHHHH-HHCCCCHHHHHHHEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEE T ss_conf 889999999987753-3102631333341002434127899889998188899799999999998506753234146532 Q ss_pred EECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC Q ss_conf 5579079999999887999899999999999999987798689999605887645554 Q gi|254780343|r 240 QAGATFFINFHLVVDSHMIVLDAHKICNKLERSLEENIGQAIITIHIEPANEVTHGIH 297 (311) Q Consensus 240 ~~G~~~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~~~~~~v~ih~ep~~~~~~~~~ 297 (311) ..|...++++|+++|+++++.++|++.|-+++.|+....+.++++|.|. +..|+.+ T Consensus 351 ~~g~~~~Vev~ivl~~~~~l~~ah~i~E~lq~~ie~l~ever~fvh~d~--e~~hr~~ 406 (412) T KOG1485 351 TFGSHYFVEVHIVLDEDLSLSVAHDIGETLQKKIELLPEVERAFVHIDY--EFLHRPH 406 (412) T ss_pred CCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCHHEEEEEECCC--CCCCCCH T ss_conf 0352589997530488876178778779999998646122044354475--3468806 No 7 >TIGR01297 CDF cation diffusion facilitator family transporter; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells , , however others are implicated in ion uptake . The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0016020 membrane. Probab=100.00 E-value=2.2e-42 Score=287.73 Aligned_cols=279 Identities=29% Similarity=0.508 Sum_probs=261.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999972799999999999999999999999999548998668724146779999896889 Q gi|254780343|r 10 IRMALWGIPISAAITALKIIAWYVTGFISLLSDGLESIVNIITAIISYFTLKYAYRPADNTHPFGHQKAEYIAAVVEGLL 89 (311) Q Consensus 10 ~r~~~~~~~~n~~~~~~k~~~g~~t~S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~~~ 89 (311) .|..++++..|+.+++.|+++|+++||.++++|+.|++.|..+..+.+++.+.++||||++|||||+|.|.+++++++++ T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~g~~~~s~~~~~d~~h~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~e~~~~~~~~~~ 81 (294) T TIGR01297 2 KRALLISLLLNLLLLLVELVGGLLSGSLALLADALHSLSDVLALLIALLALRLSEKPPDERHPFGYGRAEVLAALLNGLF 81 (294) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 31688899999999999999998730478888777889999999999999987415775556653268999999999999 Q ss_pred HHHHHHHHHHHHHHHHHH---HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH--HHCCC--CHHHHHHHHHHHHHHHHHH Q ss_conf 999889999999999863---0022322102678888720124679999987--41033--0577875998665378878 Q gi|254780343|r 90 MTNIALIILYESWHNMSH---SPSNDFSIMGLFIGFMANIISLFWGKWLIYS--GEKNH--SAAFKANGQHFVADVVMSA 162 (311) Q Consensus 90 l~~~~~~i~~es~~~l~~---~~~~~~~~~~~~i~~~~~~v~~~~~~~~~~~--~~~~~--s~~l~a~~~~~~~D~~~s~ 162 (311) +...+.++.++++.++.+ |+ .... ..+.+...+.+++....++..+. +++.+ |.+++++++|.+.|.++|+ T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~~~~~ 159 (294) T TIGR01297 82 LVVVALFILYEAIERLLNGHAPE-EIDG-LALIVAGLGLLVNLILALLLLRGHGGHKLGHGSLNLRAAALHVLGDLLGSL 159 (294) T ss_pred HHHHHHHHHHHHHHHHHHCCCCC-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999875002441-1357-899999999999999999998642022110014789999999888889999 Q ss_pred HHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHCCCCCCEEEEEEEE Q ss_conf 888877653027--72246876689999999999899999989974044555-145899999864158883115157647 Q gi|254780343|r 163 GVLCGLLLVLIT--EYTVLDSIIACFMACNILYQGCKVISSSIKNLMDAAVK-PEHLEKIKNIIALNASGSIGIHDLKIR 239 (311) Q Consensus 163 ~vii~~~~~~~~--~~~~~D~i~ai~i~~~i~~~~~~~~~~~~~~Ll~~s~~-~~~~~~i~~~i~~~~~~V~~v~~l~~~ 239 (311) +++++..+.+++ +|+|.||+.++++++++++.++++.+++...|+|.+|+ ..+..++.+.+....|++.++|++|+| T Consensus 160 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (294) T TIGR01297 160 GVLIGALLIYFGPFGWTWADPIAALLISLLILYTAFRLLKESINVLLDGAPPELLDLIEVKKVLLLSIPGVKGVHDLHIW 239 (294) T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHEEE T ss_conf 99999999874025503777899999999999989999999999985103530356999999997515641110221023 Q ss_pred EECC-EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHC--CCCEEEEEEECCC Q ss_conf 5579-0799999998879998999999999999999877--9868999960588 Q gi|254780343|r 240 QAGA-TFFINFHLVVDSHMIVLDAHKICNKLERSLEENI--GQAIITIHIEPAN 290 (311) Q Consensus 240 ~~G~-~~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~~--~~~~v~ih~ep~~ 290 (311) +.|+ ..++++|+.+++..+.+++|++..+.++.+.++. +..++++|+||+. T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (294) T TIGR01297 240 RIGPGKLVLDVHVEVDPDLDLKEAHDIALEIEREILKRHPFGIEHVTIHVEPLG 293 (294) T ss_pred EECCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCC T ss_conf 214672578988875464325678999999999886405665316888740368 No 8 >KOG1482 consensus Probab=100.00 E-value=1.7e-42 Score=288.49 Aligned_cols=291 Identities=22% Similarity=0.345 Sum_probs=256.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 88999999999999999999999999972799999999999999999999999999548998668724146779999896 Q gi|254780343|r 7 NNMIRMALWGIPISAAITALKIIAWYVTGFISLLSDGLESIVNIITAIISYFTLKYAYRPADNTHPFGHQKAEYIAAVVE 86 (311) Q Consensus 7 ~~~~r~~~~~~~~n~~~~~~k~~~g~~t~S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~ 86 (311) ....|.++.+.++.+.+++.++++|+..||+|+++||.|.+.|+.+-.++++++|.+++||+++.+|||.|.|.++++++ T Consensus 69 ~~~~r~L~~~~~l~l~fm~~E~vGg~~a~SLAImTDAaHlLsD~~sf~isl~slw~s~~pa~~r~sfG~~R~Evlgal~S 148 (379) T KOG1482 69 RAAERKLSIAAALCLVFMIGEVVGGYKANSLAIMTDAAHLLSDVASFIISLFSLWLSSRPATKRMSFGFHRAEVLGALVS 148 (379) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCEECCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCEEHHHHHHHHHH T ss_conf 66666699999999999999984773100024453446788889999999989987037998723114344777778998 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH--HCCC---------------CHHHHH Q ss_conf 88999988999999999986300223221026788887201246799999874--1033---------------057787 Q gi|254780343|r 87 GLLMTNIALIILYESWHNMSHSPSNDFSIMGLFIGFMANIISLFWGKWLIYSG--EKNH---------------SAAFKA 149 (311) Q Consensus 87 ~~~l~~~~~~i~~es~~~l~~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~~~~--~~~~---------------s~~l~a 149 (311) .+.++.+.+.+++++++|+++++.+..+.++++++.++.++|..+...+...+ .+.. +.|++| T Consensus 149 v~~IW~~tgvLV~~Ai~Rl~s~~~ev~g~~m~i~a~~gv~vNiim~~vL~~~~h~h~H~~~~s~g~~h~~~~~~n~nvra 228 (379) T KOG1482 149 VLLIWVVTGVLVYEAIQRLLSGDYEVNGGIMLITAAVGVAVNIIMGFVLHQSGHGHSHGGSHSHGHSHDHGEELNLNVRA 228 (379) T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEECCEEEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH T ss_conf 88888766445998776560675065363799875323334435321011467777788887767655544443347788 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC Q ss_conf 5998665378878888877653027-722468766899999999998999999899740445551458999998641588 Q gi|254780343|r 150 NGQHFVADVVMSAGVLCGLLLVLIT-EYTVLDSIIACFMACNILYQGCKVISSSIKNLMDAAVKPEHLEKIKNIIALNAS 228 (311) Q Consensus 150 ~~~~~~~D~~~s~~vii~~~~~~~~-~~~~~D~i~ai~i~~~i~~~~~~~~~~~~~~Ll~~s~~~~~~~~i~~~i~~~~~ 228 (311) .+.|.+.|.+.|+||+++..+.+|. +|...||+..++.+.+.+.+..+++|+.+..||+.+|..-+.+++++.+ +..+ T Consensus 229 AyiHVlGDliQSvGV~iaa~Ii~f~P~~~i~DpICT~~FSiivl~TT~~i~rd~~~iLmE~~P~~~d~~~~~~~l-~~ie 307 (379) T KOG1482 229 AFVHVLGDLIQSVGVLIAALIIYFKPEYKIADPICTFVFSIIVLGTTITILRDILGILMEGTPRNLDFDKVKKGL-LSIE 307 (379) T ss_pred HHHHHHHHHHHHHHHHHHHEEEEECCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH-HHHC T ss_conf 999999999998878761225785544340572454467899998679999999999753897657678999877-4211 Q ss_pred CCCEEEEEEEEEECC-EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCHHHHHH Q ss_conf 831151576475579-0799999998879998999999999999999877986899996058876455548883145654 Q gi|254780343|r 229 GSIGIHDLKIRQAGA-TFFINFHLVVDSHMIVLDAHKICNKLERSLEENIGQAIITIHIEPANEVTHGIHVPLKENKNQC 307 (311) Q Consensus 229 ~V~~v~~l~~~~~G~-~~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~~~~~~v~ih~ep~~~~~~~~~~~~~e~~~~~ 307 (311) ||+.+|++|+|.++- +..+++|+..++. .+++.+.+++.+.++++|+..++|||+||+.+.- ++|..| T Consensus 308 gV~~VHdLhIWsiTv~k~~ls~Hv~i~~~---ad~~~vL~~~~~~i~~~~~~~~vTiQie~~~~~~--------~~c~~c 376 (379) T KOG1482 308 GVKAVHDLHIWSITVGKVALSVHLAIDSE---ADAEEVLDEARSLIKRRYGISHVTIQIEPYTEEM--------DDCLMC 376 (379) T ss_pred CEEEEEEEEEEEEECCCEEEEEEEEECCC---CCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCH--------HHHHHC T ss_conf 64688888888774275578999961688---8989999999999974256589999815875532--------357643 Q ss_pred HC Q ss_conf 20 Q gi|254780343|r 308 LK 309 (311) Q Consensus 308 ~~ 309 (311) -. T Consensus 377 ~~ 378 (379) T KOG1482 377 QT 378 (379) T ss_pred CC T ss_conf 59 No 9 >KOG1484 consensus Probab=100.00 E-value=2.5e-37 Score=255.71 Aligned_cols=274 Identities=18% Similarity=0.250 Sum_probs=225.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999972799999999999999999999999999548998668724146779999896889 Q gi|254780343|r 10 IRMALWGIPISAAITALKIIAWYVTGFISLLSDGLESIVNIITAIISYFTLKYAYRPADNTHPFGHQKAEYIAAVVEGLL 89 (311) Q Consensus 10 ~r~~~~~~~~n~~~~~~k~~~g~~t~S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~~~ 89 (311) .|..+..+.+|+.++..+++.|..|||..+++|++|++.|+.+.++.+++..++++|+|..|||||+|+|.++++.++++ T Consensus 34 sr~if~f~llnl~~~fv~l~y~~~snSlgLiSda~hm~FDctal~~gL~a~~is~~~~~~~fsyG~~r~evLagF~n~vf 113 (354) T KOG1484 34 SRSIFLFLLLNLAFMFVELFYGSWSNSLGLISDAFHMFFDCTALLAGLYASVISKWPANDKFSYGYGRIEVLAGFVNGVF 113 (354) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 15669999998999999999864367178788899999999999852457787417885556742677889999999899 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH--HHCC------------------------- Q ss_conf 9998899999999998630022322102678888720124679999987--4103------------------------- Q gi|254780343|r 90 MTNIALIILYESWHNMSHSPSNDFSIMGLFIGFMANIISLFWGKWLIYS--GEKN------------------------- 142 (311) Q Consensus 90 l~~~~~~i~~es~~~l~~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~~~--~~~~------------------------- 142 (311) +.+.+++++.|+++|+++||+...... +.+..++.++|+.- .+.++. +... T Consensus 114 lvl~a~fi~~Es~eRl~~ppei~t~rl-lvVS~~gllvnLvG-i~aF~h~~~h~hg~~~~s~~~~h~~~~~~~~~~~~~~ 191 (354) T KOG1484 114 LVLIAFFIFSESVERLFDPPEIHTNRL-LVVSVLGLLVNLVG-ILAFSHGHAHSHGSHHHSSHSGHLALLFHSLLGVWDL 191 (354) T ss_pred HHHHHHHHHHHHHHHHCCCHHCCCCEE-EEEEHHHHHHHHHH-HHHHCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCC T ss_conf 999999976999998509154078616-87447899999989-9973134543567887653222101011000244322 Q ss_pred -----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf -----------305778759986653788788888776530277224687668999999999989999998997404455 Q gi|254780343|r 143 -----------HSAAFKANGQHFVADVVMSAGVLCGLLLVLITEYTVLDSIIACFMACNILYQGCKVISSSIKNLMDAAV 211 (311) Q Consensus 143 -----------~s~~l~a~~~~~~~D~~~s~~vii~~~~~~~~~~~~~D~i~ai~i~~~i~~~~~~~~~~~~~~Ll~~s~ 211 (311) .+..+.....|.+.|.++|+|++++..+..++||.++||+++++|+++++.+.+|++|++.+.|++++| T Consensus 192 ~~~~~~~i~g~~~~~m~gifLHVLaDtlgSvGviist~Li~~~gw~~aDpicsllIailIf~sv~PL~k~s~~iLLq~tP 271 (354) T KOG1484 192 HHHAHGHIHGHSHENMPGIFLHVLADTLGSVGVIISTLLIKLFGWMIADPICSLLIAILIFLSVLPLLKYSGKILLQRTP 271 (354) T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 33222456773100266424999998711069999999999619611347999999999999988889988778874299 Q ss_pred CHHH--HHHHHHHHHHCCCCCCEEEEEEEEEECCE-EEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC Q ss_conf 5145--89999986415888311515764755790-79999999887999899999999999999987798689999605 Q gi|254780343|r 212 KPEH--LEKIKNIIALNASGSIGIHDLKIRQAGAT-FFINFHLVVDSHMIVLDAHKICNKLERSLEENIGQAIITIHIEP 288 (311) Q Consensus 212 ~~~~--~~~i~~~i~~~~~~V~~v~~l~~~~~G~~-~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~~~~~~v~ih~ep 288 (311) |... .++..+.+ ...+||.++.+-|.|+.+++ ...++|+.|..+.+ -+.+..++.+.+... ++.+.|||+|. T Consensus 272 p~~~~~l~~cl~~I-s~~~gV~~v~~~hFWt~~~g~~vGtlhl~V~~dad---e~~vl~~V~~~~~~~-gV~~ltvQv~~ 346 (354) T KOG1484 272 PHLENSLKQCLRQI-STLDGVTSVQNPHFWTLESGSVVGTLHLQVSSDAD---EQSVLAHVTRKLEDA-GVKDLTVQVEK 346 (354) T ss_pred CCHHHHHHHHHHHH-HCCCCHHHHCCCCEEECCCCCEEEEEEEEEECCCC---HHHHHHHHHHHHHHC-CEEEEEEEEEC T ss_conf 11165899999986-45444433046742441388447899999846863---678999999888763-64389999952 Q ss_pred CC Q ss_conf 88 Q gi|254780343|r 289 AN 290 (311) Q Consensus 289 ~~ 290 (311) .+ T Consensus 347 ~~ 348 (354) T KOG1484 347 EN 348 (354) T ss_pred CC T ss_conf 42 No 10 >KOG1483 consensus Probab=100.00 E-value=6.7e-38 Score=259.33 Aligned_cols=273 Identities=22% Similarity=0.359 Sum_probs=233.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999972799999999999999999999999999548998668724146779999896889999 Q gi|254780343|r 13 ALWGIPISAAITALKIIAWYVTGFISLLSDGLESIVNIITAIISYFTLKYAYRPADNTHPFGHQKAEYIAAVVEGLLMTN 92 (311) Q Consensus 13 ~~~~~~~n~~~~~~k~~~g~~t~S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~~~l~~ 92 (311) .+.-+++.+++++++++.|+.++|+||++|++|++.|+++.++++++.|.+++.|++++||||.|.|.++++++++++.. T Consensus 11 li~~l~ltiiFfvLEli~gyv~~sLaLiadSfHML~dIiaLivaf~~ik~a~~~~~~k~tyGw~rAEilGalvN~ifl~a 90 (404) T KOG1483 11 LISVLVLTIIFFVLELITGYVTNSLALIADSFHMLNDIIALIVAFWAIKEAKRIPLQKYTYGWARAEILGALVNAIFLTA 90 (404) T ss_pred EEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 56348888988774130020242177774578899999999999999876412761004863439999865558899999 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH--------------------------------- Q ss_conf 88999999999986300223221026788887201246799999874--------------------------------- Q gi|254780343|r 93 IALIILYESWHNMSHSPSNDFSIMGLFIGFMANIISLFWGKWLIYSG--------------------------------- 139 (311) Q Consensus 93 ~~~~i~~es~~~l~~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~~~~--------------------------------- 139 (311) ..+.+..|+++|+++|+..+.+...+.+++++++.|.+-.......+ T Consensus 91 lc~~I~~EA~~R~I~p~~i~~P~~vL~vgi~gLi~Nvlg~~lfhdhg~~h~~~~H~h~hg~~~~~~~~~~~~~~~~~~G~ 170 (404) T KOG1483 91 LCVSILIEAIERIIEPHHIENPILVLYVGIIGLISNVLGLFLFHDHGHDHGHGVHGHSHGGMKGFIGLNLTHLHSHAIGC 170 (404) T ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHCCCC T ss_conf 99999999998641776566850100256999999987765242157666776778887763452133104874010477 Q ss_pred ---------------------------------------------------HCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf ---------------------------------------------------10330577875998665378878888877 Q gi|254780343|r 140 ---------------------------------------------------EKNHSAAFKANGQHFVADVVMSAGVLCGL 168 (311) Q Consensus 140 ---------------------------------------------------~~~~s~~l~a~~~~~~~D~~~s~~vii~~ 168 (311) ++..+.+++..++|.+.|++.+++|+++. T Consensus 171 ~t~~~~~d~~~~~~p~~~l~~~~~~N~~~~s~pv~~~~S~~r~~~~~~~~e~~~~~lnmhGv~LhvL~Dalg~I~Vi~~A 250 (404) T KOG1483 171 NTLAKQLDTPLGPGPNAHLSGVMSQNLDGSSTPVQNHGSLSRDDAREKTEEKLDRNLNMHGVFLHVLGDALGSIIVIVSA 250 (404) T ss_pred CCHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCEEEEEEE T ss_conf 50000135689875155505642237788777531577544463033212322024100350234303244663789988 Q ss_pred HHHHCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEE-CCE Q ss_conf 653027722---4687668999999999989999998997404455514589999986415888311515764755-790 Q gi|254780343|r 169 LLVLITEYT---VLDSIIACFMACNILYQGCKVISSSIKNLMDAAVKPEHLEKIKNIIALNASGSIGIHDLKIRQA-GAT 244 (311) Q Consensus 169 ~~~~~~~~~---~~D~i~ai~i~~~i~~~~~~~~~~~~~~Ll~~s~~~~~~~~i~~~i~~~~~~V~~v~~l~~~~~-G~~ 244 (311) ++.|+++|. |+||+.+++++.+|+++++++.|++...|++.+|...+.+.+++.+ ..+|||.++||+|+|+. |+. T Consensus 251 ~~v~~t~~~~~~y~DP~lsi~~~~ii~~sa~pl~k~s~liLLq~~P~~i~ld~v~~~l-~~~~gv~~vh~lhvWqL~~~r 329 (404) T KOG1483 251 LFVYKTEYSWAYYLDPILSIVLTVIILFSAYPLLKESALILLQTTPGSIDLDIVEKDL-LTVPGVISVHDLHVWQLAGSR 329 (404) T ss_pred EEEEECCEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH-HCCCCEEEEEEEEEEEECCCE T ss_conf 9999622031555073699999999997006888899999987487753099999887-357653665534320113646 Q ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCC Q ss_conf 7999999988799989999999999999998779868999960588 Q gi|254780343|r 245 FFINFHLVVDSHMIVLDAHKICNKLERSLEENIGQAIITIHIEPAN 290 (311) Q Consensus 245 ~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~~~~~~v~ih~ep~~ 290 (311) +.+++||.++.- .+--+++++++..++++ ++..+|||.|-++ T Consensus 330 ~IAt~Hi~~~~p---~~~~~~a~~ir~~fh~~-GIhs~TiqPeF~~ 371 (404) T KOG1483 330 IIATIHIQIQNP---KEYMKIAEKIRSYFHDQ-GIHSTTIQPEFAP 371 (404) T ss_pred EEEEEEEEECCC---HHHHHHHHHHHHHHHHC-CCCCEEECCCHHH T ss_conf 899999983292---78899999999998855-8753134542021 No 11 >COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism] Probab=99.98 E-value=1.7e-30 Score=212.35 Aligned_cols=277 Identities=14% Similarity=0.187 Sum_probs=240.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 99999999999999999999999997279999999999999999999999999954-89986687241467799998968 Q gi|254780343|r 9 MIRMALWGIPISAAITALKIIAWYVTGFISLLSDGLESIVNIITAIISYFTLKYAY-RPADNTHPFGHQKAEYIAAVVEG 87 (311) Q Consensus 9 ~~r~~~~~~~~n~~~~~~k~~~g~~t~S~allada~~s~~D~~~~~~~l~~~~~s~-k~~d~~~pyG~~r~E~l~~l~~~ 87 (311) ..+....++...+++++..+++|+++||.++.-|+++|+.|.....+++...|+.. +|.|.|||||++.+||+.-.++| T Consensus 18 eq~~L~~Si~~tvi~A~~GIi~GL~~gS~~IiFDGvYSl~da~mtllsL~vsrli~~~p~~~RF~~GfwhlEplvL~ing 97 (314) T COG3965 18 EQLYLRISIAGTVIFAAFGIIWGLLSGSMSIIFDGVYSLIDAGMTLLSLLVSRLIAKDPRDARFPYGFWHLEPLVLAING 97 (314) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCC T ss_conf 78999999999999999999999982665888601899999999999999999960499756567650100005764212 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 89999889999999999863002232210267888872012467999998741033057787599866537887888887 Q gi|254780343|r 88 LLMTNIALIILYESWHNMSHSPSNDFSIMGLFIGFMANIISLFWGKWLIYSGEKNHSAAFKANGQHFVADVVMSAGVLCG 167 (311) Q Consensus 88 ~~l~~~~~~i~~es~~~l~~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vii~ 167 (311) .++.+.+.+.++.++..++.+.......+++.+++++...|..+++...|.+|+.+|+-+.++.+.|+-|...|.+++++ T Consensus 98 ~ll~ll~lyAlinAl~~l~dGGR~v~~~~ai~yt~~s~~~Ca~~~~~~~r~nrr~~s~lIald~kqW~Mst~lS~al~Va 177 (314) T COG3965 98 TLLALLCLYALINALGSLLDGGREVEPGHAIAYTLVSVTGCAAIAWKLRRLNRRLKSPLIALDTKQWLMSTCLSAALFVA 177 (314) T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 89999999999999999863983214028899999999999999999976500378840015888999998899999999 Q ss_pred HHHHHC---CCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH--CCCCCCEEEEEEE Q ss_conf 765302---772----2468766899999999998999999899740445551458999998641--5888311515764 Q gi|254780343|r 168 LLLVLI---TEY----TVLDSIIACFMACNILYQGCKVISSSIKNLMDAAVKPEHLEKIKNIIAL--NASGSIGIHDLKI 238 (311) Q Consensus 168 ~~~~~~---~~~----~~~D~i~ai~i~~~i~~~~~~~~~~~~~~Ll~~s~~~~~~~~i~~~i~~--~~~~V~~v~~l~~ 238 (311) .+..+. |.| +|.||.+-.+.+++++..+.+.++.+.++.+..+|+ +..+.++..... +..+..+. +..+ T Consensus 178 F~~a~~l~~T~~a~l~~Y~DPmvlaL~~~v~IplPlg~vk~al~eiLlmtP~-el~q~ies~~~~~v~k~~f~~~-~~yv 255 (314) T COG3965 178 FAAAWLLAGTKFAHLVVYADPMVLALVCLVFIPLPLGTVKSALREILLMTPN-ELQQSIESHAHEIVEKYGFPSY-HVYV 255 (314) T ss_pred HHHHHHHCCCCHHHHHCCCCHHHHHHHHHHEEECCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHCCCHH-HHHH T ss_conf 9999986468422530014789999997824624487899999999951937-8899999999999998658527-8899 Q ss_pred EEECCEEEEEEEEEECCCC---CHHHHHHHHHHHHHHHHHHCCCCEEEEEEE Q ss_conf 7557907999999988799---989999999999999998779868999960 Q gi|254780343|r 239 RQAGATFFINFHLVVDSHM---IVLDAHKICNKLERSLEENIGQAIITIHIE 287 (311) Q Consensus 239 ~~~G~~~~v~~~i~v~~~~---~~~eah~i~~~ie~~l~~~~~~~~v~ih~e 287 (311) -+.|...++|+|..+|++. .+++.++|+|++.+.|.+.-+...+||-+- T Consensus 256 ArVGr~l~IEi~fiip~~~~ar~Ved~d~Irdei~~slg~~g~~rwltvsfT 307 (314) T COG3965 256 ARVGRGLFIEIHFIIPRESDARNVEDWDDIRDEIGQSLGSLGYERWLTVSFT 307 (314) T ss_pred HHHCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEE T ss_conf 9846622899999827766874633689999999888634786743899985 No 12 >KOG2802 consensus Probab=99.91 E-value=1.6e-23 Score=168.15 Aligned_cols=184 Identities=16% Similarity=0.230 Sum_probs=146.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999727999999999999999999999999995489986687241467799998968899 Q gi|254780343|r 11 RMALWGIPISAAITALKIIAWYVTGFISLLSDGLESIVNIITAIISYFTLKYAYRPADNTHPFGHQKAEYIAAVVEGLLM 90 (311) Q Consensus 11 r~~~~~~~~n~~~~~~k~~~g~~t~S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~~~l 90 (311) |..-.++++|..-+..||.+|++|||.+|+|+++||+.|..++++..++++.|.|.||..|||||.+..+++++++|+-+ T Consensus 207 rvVatAi~iN~l~~~~Kfg~w~~tgShsmfAEaIHS~aD~~NQ~lLa~Gis~S~q~PD~lhPYGYsnmRyVsSLISgvGI 286 (503) T KOG2802 207 RVVATAICINGLNCFFKFGAWIYTGSHSMFAEAIHSLADTCNQLLLALGISKSVQTPDPLHPYGYSNMRYVSSLISGVGI 286 (503) T ss_pred CEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCE T ss_conf 26516888878999998657654266789999999999999899999602430469998787765306679999732442 Q ss_pred HHHHH-HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH---HHHHHHHHHHHHHCCCCHHHHHHHHH---------HHHH Q ss_conf 99889-99999999986300223221026788887201---24679999987410330577875998---------6653 Q gi|254780343|r 91 TNIAL-IILYESWHNMSHSPSNDFSIMGLFIGFMANII---SLFWGKWLIYSGEKNHSAAFKANGQH---------FVAD 157 (311) Q Consensus 91 ~~~~~-~i~~es~~~l~~~~~~~~~~~~~~i~~~~~~v---~~~~~~~~~~~~~~~~s~~l~a~~~~---------~~~D 157 (311) +.+|. ..+|.+++.++||++++...|+..+...+++. .++.+....+.+.+.++..++-.-+. .+.| T Consensus 287 fc~G~GlSiyhGv~gLlhpePi~~l~~ay~il~gSl~~eGasllvAi~evkr~Ak~~gmSi~dYV~~~~DPs~nvVl~ED 366 (503) T KOG2802 287 FCMGCGLSIYHGVMGLLHPEPIESLLWAYCILAGSLVSEGASLLVAINEVKRNAKAKGMSIYDYVMESRDPSTNVVLLED 366 (503) T ss_pred EEECCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCEEEEECC T ss_conf 66426604333002346899995068999999667885433999999999987887498798987606898623899434 Q ss_pred HHHHHHHHHH---HHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 7887888887---765302772246876689999999999 Q gi|254780343|r 158 VVMSAGVLCG---LLLVLITEYTVLDSIIACFMACNILYQ 194 (311) Q Consensus 158 ~~~s~~vii~---~~~~~~~~~~~~D~i~ai~i~~~i~~~ 194 (311) ..+-.|+.++ +.+..++|.|..|++++++++.++-.. T Consensus 367 tAAVtGv~IAaa~m~lss~tgnPIyD~~GSivvGaLLGmV 406 (503) T KOG2802 367 TAAVTGVIIAAACMGLSSITGNPIYDSLGSIVVGALLGMV 406 (503) T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH T ss_conf 1788889999998888872189786542037898888777 No 13 >COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism] Probab=98.40 E-value=8e-06 Score=55.89 Aligned_cols=88 Identities=19% Similarity=0.195 Sum_probs=64.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999997279999999999999999999999999954899866872414677999989688999 Q gi|254780343|r 12 MALWGIPISAAITALKIIAWYVTGFISLLSDGLESIVNIITAIISYFTLKYAYRPADNTHPFGHQKAEYIAAVVEGLLMT 91 (311) Q Consensus 12 ~~~~~~~~n~~~~~~k~~~g~~t~S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~~~l~ 91 (311) .++.++.+|..+.-.+.-.|--+||.+|.||+.|...|.++++.+++++- ... +|+.-++++++++.++.++ T Consensus 122 v~l~s~~~~~~l~~~~~~~~kk~~S~aL~Ada~h~~sD~~ts~~~lvgl~-~~~-------~g~~~lD~i~a~~I~~~Il 193 (304) T COG0053 122 VALISIVIKEALYRYLRRVGKKTNSQALIADALHHRSDVLTSLAVLVGLL-GSL-------LGWPWLDPLAALLISLYIL 193 (304) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-------HCHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999982889889656888729999999999999-999-------2839898999999999999 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 9889999999999863 Q gi|254780343|r 92 NIALIILYESWHNMSH 107 (311) Q Consensus 92 ~~~~~i~~es~~~l~~ 107 (311) ..|+.++++++..+.. T Consensus 194 ~~~~~~~~~s~~~L~d 209 (304) T COG0053 194 KTGFRLFKESVNELMD 209 (304) T ss_pred HHHHHHHHHHHHHHHC T ss_conf 9999999999999847 No 14 >PRK09509 fieF ferrous iron efflux protein F; Reviewed Probab=98.34 E-value=1.3e-05 Score=54.62 Aligned_cols=87 Identities=15% Similarity=0.004 Sum_probs=43.3 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHHHHH Q ss_conf 887201246799999874103305778759986653788788888776530-------2772246876689999999999 Q gi|254780343|r 122 FMANIISLFWGKWLIYSGEKNHSAAFKANGQHFVADVVMSAGVLCGLLLVL-------ITEYTVLDSIIACFMACNILYQ 194 (311) Q Consensus 122 ~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vii~~~~~~-------~~~~~~~D~i~ai~i~~~i~~~ 194 (311) .+++++|.++...+...+--.+|.++.|++.|++.|..+++.++++.-... -+|+.-+.++++++++++++.. T Consensus 14 ~~si~~n~~L~i~K~~~g~~sgS~AllADa~hSl~D~~s~~~~l~~~~~s~kp~d~~hPyGhgR~E~l~al~~~i~i~~~ 93 (300) T PRK09509 14 IAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIAASLTNLLVVRYSLQPADDEHTFGHGKAESLAALAQSMFISGS 93 (300) T ss_pred HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999450999998999999999999999999996599977799708789999999999999999 Q ss_pred HHHHHHHHHHHHHC Q ss_conf 89999998997404 Q gi|254780343|r 195 GCKVISSSIKNLMD 208 (311) Q Consensus 195 ~~~~~~~~~~~Ll~ 208 (311) ++.++.+++..|+. T Consensus 94 ~~~i~~esi~~l~~ 107 (300) T PRK09509 94 ALFLFLTGIQHLIS 107 (300) T ss_pred HHHHHHHHHHHHCC T ss_conf 99999999998469 No 15 >PRK03557 zinc transporter ZitB; Provisional Probab=97.77 E-value=0.00055 Score=44.28 Aligned_cols=72 Identities=15% Similarity=0.128 Sum_probs=37.8 Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 874103305778759986653788788888776530-------277224687668999999999989999998997404 Q gi|254780343|r 137 YSGEKNHSAAFKANGQHFVADVVMSAGVLCGLLLVL-------ITEYTVLDSIIACFMACNILYQGCKVISSSIKNLMD 208 (311) Q Consensus 137 ~~~~~~~s~~l~a~~~~~~~D~~~s~~vii~~~~~~-------~~~~~~~D~i~ai~i~~~i~~~~~~~~~~~~~~Ll~ 208 (311) -.|--.+|.+|.||+.|.++|+++.+..+++.-... -+||.-++.+++++.+++++..++.++.|++..+.. T Consensus 37 i~G~~s~SlALlaDa~H~l~D~~~~~i~l~a~~~a~kp~d~~~tyG~~R~E~laAl~~~i~L~~~~~~i~~eai~rl~~ 115 (312) T PRK03557 37 VGGFLSGSLALLADAGHMLTDAAALLFALLAVQFSRRPPTIRHTFGWLRLTTLAAFVNAIALVVITILIVWEAIERFRT 115 (312) T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 9999841499999999999899999999999999758998657853999999999999999999999999999998479 No 16 >pfam01545 Cation_efflux Cation efflux family. Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are thought to be efflux pumps that remove these ions from cells. Probab=97.30 E-value=0.01 Score=36.13 Aligned_cols=67 Identities=21% Similarity=0.274 Sum_probs=48.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 79999999999999999999999999954899866872414677999989688999988999999999986300 Q gi|254780343|r 36 FISLLSDGLESIVNIITAIISYFTLKYAYRPADNTHPFGHQKAEYIAAVVEGLLMTNIALIILYESWHNMSHSP 109 (311) Q Consensus 36 S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~i~~es~~~l~~~~ 109 (311) |..+.+++.|...|.++++..+++.-.+..- |+..++++++++.+++++..++.+++++...+.... T Consensus 124 s~~l~a~~~~~~~D~~~s~~~~~~~~~~~~~-------~~~~~D~i~~iii~~~ii~~~~~~~~~s~~~Ll~~~ 190 (273) T pfam01545 124 SPALRADALHALVDVLGSLAVLIGLLLILLT-------GLYIADPLASLLIALLILYTGLRLLKESLSELLGAS 190 (273) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 9899999999999999998999999999971-------967777899999999999999999999999996779 No 17 >COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism] Probab=97.23 E-value=0.0071 Score=37.19 Aligned_cols=86 Identities=19% Similarity=0.199 Sum_probs=66.1 Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 01246799999874103305778759986653788788888776530-------27722468766899999999998999 Q gi|254780343|r 126 IISLFWGKWLIYSGEKNHSAAFKANGQHFVADVVMSAGVLCGLLLVL-------ITEYTVLDSIIACFMACNILYQGCKV 198 (311) Q Consensus 126 ~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vii~~~~~~-------~~~~~~~D~i~ai~i~~~i~~~~~~~ 198 (311) +++..++....-.|-..+|.++.||++|.++|+++-...+++..+.. .+||+.+.-+++++-+++++..+.-+ T Consensus 29 ~L~~~f~~iE~i~g~~s~SlaLLADa~Hml~D~~al~lal~A~~~a~r~~~~~~TfGy~R~eiLaa~~nav~Li~~s~~I 108 (296) T COG1230 29 LLNLAFMLIEIIGGLLTGSLALLADALHMLSDALALLLALIAIKLARRPATKRFTFGYKRLEILAAFLNALLLIVVSLLI 108 (296) T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999996569999737778899999999999999841777787773076899999999999999999999 Q ss_pred HHHHHHHHHCCCC Q ss_conf 9998997404455 Q gi|254780343|r 199 ISSSIKNLMDAAV 211 (311) Q Consensus 199 ~~~~~~~Ll~~s~ 211 (311) ++|+...+..-.+ T Consensus 109 ~~EAi~R~~~P~~ 121 (296) T COG1230 109 LWEAIQRLLAPPP 121 (296) T ss_pred HHHHHHHHCCCCC T ss_conf 9999999648888 No 18 >KOG1485 consensus Probab=97.18 E-value=0.0079 Score=36.90 Aligned_cols=91 Identities=12% Similarity=0.055 Sum_probs=73.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHH Q ss_conf 67888872012467999998741033057787599866537887888887765302-------77224687668999999 Q gi|254780343|r 118 LFIGFMANIISLFWGKWLIYSGEKNHSAAFKANGQHFVADVVMSAGVLCGLLLVLI-------TEYTVLDSIIACFMACN 190 (311) Q Consensus 118 ~~i~~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vii~~~~~~~-------~~~~~~D~i~ai~i~~~ 190 (311) ..+.-+++.+|..++.-+...+--.+|.++.|++.|.+.|.++++...++.....- -|..-..|++.+.++.+ T Consensus 114 ~~~~~i~l~~Nigl~vaK~~as~~sgS~aIiAsavdSl~Dl~s~fvll~s~~~~~k~~~~~YP~G~~r~EtvG~i~~S~i 193 (412) T KOG1485 114 RRAAWIGLAANIGLAVAKVVASYLSGSMAIIASAVDSLSDLVSGFVLLFSLRAAKKKPTYEYPRGRGRVETVGLIAVSVI 193 (412) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCHHHHHHHHH T ss_conf 99999999999999999998888412099999899999999999999999998638982118898775200129999999 Q ss_pred HHHHHHHHHHHHHHHHHC Q ss_conf 999989999998997404 Q gi|254780343|r 191 ILYQGCKVISSSIKNLMD 208 (311) Q Consensus 191 i~~~~~~~~~~~~~~Ll~ 208 (311) |...+..+.+++.+.+.+ T Consensus 194 Ma~agv~ii~sSl~~i~~ 211 (412) T KOG1485 194 MAMAGVQIIWSSLRLIVG 211 (412) T ss_pred HHHHHHHHHHHHHHHHHC T ss_conf 999988999986786514 No 19 >TIGR01297 CDF cation diffusion facilitator family transporter; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells , , however others are implicated in ion uptake . The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0016020 membrane. Probab=96.30 E-value=0.085 Score=30.37 Aligned_cols=96 Identities=20% Similarity=0.206 Sum_probs=73.5 Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 99999999999999999999--99972--799999999999999999999999999548998668724146779999896 Q gi|254780343|r 11 RMALWGIPISAAITALKIIA--WYVTG--FISLLSDGLESIVNIITAIISYFTLKYAYRPADNTHPFGHQKAEYIAAVVE 86 (311) Q Consensus 11 r~~~~~~~~n~~~~~~k~~~--g~~t~--S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~ 86 (311) -.+..++..|........-. |.-.+ |.++.++..|...|..++...+.+.......| ||+.-.+++.+++. T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~d~~~~~~~ 186 (294) T TIGR01297 112 IVAGLGLLVNLILALLLLRGHGGHKLGHGSLNLRAAALHVLGDLLGSLGVLIGALLIYFGP-----FGWTWADPIAALLI 186 (294) T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHH T ss_conf 9999999999999999986420221100147899999998888899999999999987402-----55037778999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 8899998899999999998630022 Q gi|254780343|r 87 GLLMTNIALIILYESWHNMSHSPSN 111 (311) Q Consensus 87 ~~~l~~~~~~i~~es~~~l~~~~~~ 111 (311) ++.++..+..++.+++..+....++ T Consensus 187 ~~~~~~~~~~~~~~~~~~l~~~~~~ 211 (294) T TIGR01297 187 SLLILYTAFRLLKESINVLLDGAPP 211 (294) T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 9999998999999999998510353 No 20 >KOG1484 consensus Probab=95.21 E-value=0.23 Score=27.60 Aligned_cols=88 Identities=14% Similarity=0.197 Sum_probs=70.2 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHHHHHH Q ss_conf 88720124679999987410330577875998665378878888877653027-------72246876689999999999 Q gi|254780343|r 122 FMANIISLFWGKWLIYSGEKNHSAAFKANGQHFVADVVMSAGVLCGLLLVLIT-------EYTVLDSIIACFMACNILYQ 194 (311) Q Consensus 122 ~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vii~~~~~~~~-------~~~~~D~i~ai~i~~~i~~~ 194 (311) +...++|..+.......+-..+|..+.++++|...|..+..+-+.+..+...+ |+..+..+++..-+++.... T Consensus 38 f~f~llnl~~~fv~l~y~~~snSlgLiSda~hm~FDctal~~gL~a~~is~~~~~~~fsyG~~r~evLagF~n~vflvl~ 117 (354) T KOG1484 38 FLFLLLNLAFMFVELFYGSWSNSLGLISDAFHMFFDCTALLAGLYASVISKWPANDKFSYGYGRIEVLAGFVNGVFLVLI 117 (354) T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 99999989999999998643671787888999999999998524577874178855567426778899999998999999 Q ss_pred HHHHHHHHHHHHHCC Q ss_conf 899999989974044 Q gi|254780343|r 195 GCKVISSSIKNLMDA 209 (311) Q Consensus 195 ~~~~~~~~~~~Ll~~ 209 (311) ++.++.|++..|++- T Consensus 118 a~fi~~Es~eRl~~p 132 (354) T KOG1484 118 AFFIFSESVERLFDP 132 (354) T ss_pred HHHHHHHHHHHHCCC T ss_conf 999769999985091 No 21 >COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only] Probab=93.93 E-value=0.46 Score=25.71 Aligned_cols=145 Identities=14% Similarity=0.237 Sum_probs=80.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHH Q ss_conf 6788887201246799999874103305778759986653788788888776530-------277224687668999999 Q gi|254780343|r 118 LFIGFMANIISLFWGKWLIYSGEKNHSAAFKANGQHFVADVVMSAGVLCGLLLVL-------ITEYTVLDSIIACFMACN 190 (311) Q Consensus 118 ~~i~~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vii~~~~~~-------~~~~~~~D~i~ai~i~~~ 190 (311) +..+++..++..+...+..+..++.++...+...-.. .+.++|.++|++++. ..+.|++-++.+++++++ T Consensus 45 ligai~~~li~~~~~~~~~~~~~~le~~i~k~~~~~i---lf~tiGLiiGLlia~l~~~pL~~~~ip~~~~ii~vi~t~i 121 (356) T COG4956 45 LIGAIIFFLISFWFGKYVLNWLKRLEEQIRKLPVTTI---LFGTIGLIIGLLIAVLLSSPLFLLPIPFISTIIPVILTII 121 (356) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 9999999999999999999999999999983689999---9987889999999999853776279607776899999999 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHH-HHHHHCCCCCCEEEEEEEE------EECCEEEEEEEEEECCCCCHHHHH Q ss_conf 999989999998997404455514589999-9864158883115157647------557907999999988799989999 Q gi|254780343|r 191 ILYQGCKVISSSIKNLMDAAVKPEHLEKIK-NIIALNASGSIGIHDLKIR------QAGATFFINFHLVVDSHMIVLDAH 263 (311) Q Consensus 191 i~~~~~~~~~~~~~~Ll~~s~~~~~~~~i~-~~i~~~~~~V~~v~~l~~~------~~G~~~~v~~~i~v~~~~~~~eah 263 (311) +.|.|+...-....+++--..+..-..+.+ +.-+.. |.-..+-|-.+- ..-..-|+|-.+.+| ..-+.|.. T Consensus 122 l~y~G~~~~~k~~de~~~l~~~~~~~~m~~~~~~~~k-~~~~KILDTSvIIDGRI~di~~TGFleG~iiiP-~FVL~ELQ 199 (356) T COG4956 122 LAYFGFQLADKKRDEFLRLLNPNRREAMKKEEEGEVK-PKKPKILDTSVIIDGRIADILQTGFLEGTIIIP-QFVLLELQ 199 (356) T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC-CCCCEEEEECEEECCHHHHHHHHCCCCCEEEEE-HHHHHHHH T ss_conf 9997367764014889875054457775455541336-899767420237721399999718736617641-79999999 Q ss_pred HHHH Q ss_conf 9999 Q gi|254780343|r 264 KICN 267 (311) Q Consensus 264 ~i~~ 267 (311) .++| T Consensus 200 ~iAD 203 (356) T COG4956 200 HIAD 203 (356) T ss_pred HHHH T ss_conf 8760 No 22 >COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown] Probab=93.23 E-value=0.61 Score=24.96 Aligned_cols=112 Identities=9% Similarity=0.092 Sum_probs=60.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH- Q ss_conf 896889999889999999999863002232210267-888872012467999998741033057787599866537887- Q gi|254780343|r 84 VVEGLLMTNIALIILYESWHNMSHSPSNDFSIMGLF-IGFMANIISLFWGKWLIYSGEKNHSAAFKANGQHFVADVVMS- 161 (311) Q Consensus 84 l~~~~~l~~~~~~i~~es~~~l~~~~~~~~~~~~~~-i~~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s- 161 (311) +.--..+++.|++.+..++..+++......+.+.+. .++++...++.+++|.++... .+| .+.-.|-.+.-+..| T Consensus 96 m~lDssLl~lg~~aLlsgitaff~~nA~~~GlItlll~a~vgGfamy~my~y~yr~~a-d~s--qr~~~~K~~lv~~~sm 172 (226) T COG4858 96 MWLDSSLLFLGAMALLSGITAFFQKNAQVYGLITLLLTAVVGGFAMYIMYYYAYRMRA-DNS--QRPGTWKYLLVAVLSM 172 (226) T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCC--CCCCHHHHHHHHHHHH T ss_conf 8863629999999999999999962883021799999998666999999999987624-345--5884199999999999 Q ss_pred ---HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf ---8888877653027722468766899999999998999 Q gi|254780343|r 162 ---AGVLCGLLLVLITEYTVLDSIIACFMACNILYQGCKV 198 (311) Q Consensus 162 ---~~vii~~~~~~~~~~~~~D~i~ai~i~~~i~~~~~~~ 198 (311) +++.++..+.--.-.+.+||++-.+++..++-.-|-+ T Consensus 173 ~lWi~v~i~t~~lPtslN~~L~pi~l~IiGav~lalRfyl 212 (226) T COG4858 173 LLWIAVMIATVFLPTSLNPQLPPIALTIIGAVILALRFYL 212 (226) T ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 9999999999507876786786199999999999999999 No 23 >PRK10263 DNA translocase FtsK; Provisional Probab=85.11 E-value=2.7 Score=20.89 Aligned_cols=49 Identities=12% Similarity=0.171 Sum_probs=31.5 Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHCCCCHHH---HHHHHHHHHHHHHHHH Q ss_conf 78759986653788788888--7765302772246---8766899999999998 Q gi|254780343|r 147 FKANGQHFVADVVMSAGVLC--GLLLVLITEYTVL---DSIIACFMACNILYQG 195 (311) Q Consensus 147 l~a~~~~~~~D~~~s~~vii--~~~~~~~~~~~~~---D~i~ai~i~~~i~~~~ 195 (311) +....+-+++-.-+++..++ +..++.||||-|+ |-+++.+++.+-+.+. T Consensus 150 lSsa~lP~lN~lGaTL~LL~~WaaGlTLFTGwSWLtIaEkiG~~vL~~lt~~~N 203 (1355) T PRK10263 150 LSTTLQPLLHSSGGTIALLCVWAAGLTLFTGWSWVTIAEKLGGWILNILTFASN 203 (1355) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 777688766306389999999987546530551999999981899999898871 No 24 >PRK10019 nickel/cobalt efflux protein RcnA; Provisional Probab=82.00 E-value=3.6 Score=20.09 Aligned_cols=43 Identities=16% Similarity=0.367 Sum_probs=29.2 Q ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999548998668724146779999896889999889999999999 Q gi|254780343|r 55 ISYFTLKYAYRPADNTHPFGHQKAEYIAAVVEGLLMTNIALIILYESWHN 104 (311) Q Consensus 55 ~~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~i~~es~~~ 104 (311) +.+.+++.++.-. -...|+--.+++++++..+|.++++..+.. T Consensus 70 lal~~l~~~~~~~-------~e~~~pwL~~~S~~lI~~iG~wmlwr~~r~ 112 (278) T PRK10019 70 IAFGGMVISKRFT-------AQSAEPWLQLISAVIIISTAFWMFWRTWRG 112 (278) T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999986513-------888999999999999999999999999977 No 25 >TIGR00930 2a30 K-Cl cotransporter; InterPro: IPR004842 This is a family of K-Cl cotransporters. It includes bumetanide-sensitive sodium-(potassium)-chloride cotransporter, an electrically silent transporter system which is a mediator of sodium and chloride reabsorption. It plays a vital role in the regulation of ionic balance and cell volume. Bumetanide-sensitive sodium-(potassium)-chloride cotransporter belongs to the SLC12A family of transporters.; GO: 0015377 cation:chloride symporter activity, 0006814 sodium ion transport, 0006821 chloride transport, 0016021 integral to membrane. Probab=77.24 E-value=5 Score=19.14 Aligned_cols=189 Identities=12% Similarity=0.093 Sum_probs=98.4 Q ss_pred CCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH Q ss_conf 68724146-77999989688999988999999999986300223221026788887201246799999874103305778 Q gi|254780343|r 70 THPFGHQK-AEYIAAVVEGLLMTNIALIILYESWHNMSHSPSNDFSIMGLFIGFMANIISLFWGKWLIYSGEKNHSAAFK 148 (311) Q Consensus 70 ~~pyG~~r-~E~l~~l~~~~~l~~~~~~i~~es~~~l~~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~~~s~~l~ 148 (311) -|--|||| -||+.+++...++...++.|.- .+- + .+.+..+......++|+.++.- .-.+||+=| T Consensus 537 ~F~~g~gkn~EP~~aylLT~~Ia~~filIA~--Ln~-i------APiiSnFFL~sYaliNfscF~~-----~l~~~PgWR 602 (1171) T TIGR00930 537 FFGKGYGKNGEPLRAYLLTFFIALLFILIAE--LNT-I------APIISNFFLASYALINFSCFHA-----SLLRSPGWR 602 (1171) T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC--CCC-C------CHHHHHHHHHHHHHHHHHHHHH-----HHHCCCCCC T ss_conf 0465778788727989999999878765521--121-1------2267889999999999999999-----985288888 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHCCCC Q ss_conf 759986653788788888776530277224687668999999999-----------------989999998997404455 Q gi|254780343|r 149 ANGQHFVADVVMSAGVLCGLLLVLITEYTVLDSIIACFMACNILY-----------------QGCKVISSSIKNLMDAAV 211 (311) Q Consensus 149 a~~~~~~~D~~~s~~vii~~~~~~~~~~~~~D~i~ai~i~~~i~~-----------------~~~~~~~~~~~~Ll~~s~ 211 (311) -.++ +.+=.++=+|.+++..+..+-.|++ .++++.|++++.. ..+..++++...|-...+ T Consensus 603 P~F~-yY~~~lSl~Ga~lC~~iMFl~~W~~--alva~~i~~~lY~Yv~Yk~p~vnWGss~qa~~y~~AL~~~~~L~~~~~ 679 (1171) T TIGR00930 603 PRFR-YYNWWLSLLGAILCVAIMFLISWWA--ALVAIVIALLLYKYVEYKKPDVNWGSSTQALSYSLALSSLLRLEEVED 679 (1171) T ss_pred CCHH-HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCC T ss_conf 6516-7879999999999999999999999--999999999987773211666675640789999999999972347888 Q ss_pred CHHHHHHHHHHHH----------HCCCCCCEEEEEEEEEECCEEEEEEEEEECC-CCCHHHHHHHHHHHHHHHHHH Q ss_conf 5145899999864----------1588831151576475579079999999887-999899999999999999987 Q gi|254780343|r 212 KPEHLEKIKNIIA----------LNASGSIGIHDLKIRQAGATFFINFHLVVDS-HMIVLDAHKICNKLERSLEEN 276 (311) Q Consensus 212 ~~~~~~~i~~~i~----------~~~~~V~~v~~l~~~~~G~~~~v~~~i~v~~-~~~~~eah~i~~~ie~~l~~~ 276 (311) ......-.-=.+. ...|.-.+.-+.-+ +-|..+.+=.||...+ ...++|+....++.++-|+++ T Consensus 680 H~KN~rPQ~LVL~g~pG~l~~~~~~rP~L~dl~~~~~-kk~~gL~I~g~v~~g~~~~~~~e~~~~~~~~~~wl~~~ 754 (1171) T TIGR00930 680 HVKNWRPQCLVLTGPPGKLEDNVVCRPALLDLASQLK-KKGKGLMIVGSVLQGPRKERVKEASAAEEKIQTWLEKR 754 (1171) T ss_pred CCCCCCCHHHEEECCCCCCCCCCCCCHHHHHHHHHHH-HHCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 8554564332143788766411366603788999998-70696089998654760534799999999999998850 No 26 >PRK10597 DNA damage-inducible protein I; Provisional Probab=73.94 E-value=6.1 Score=18.60 Aligned_cols=59 Identities=12% Similarity=0.116 Sum_probs=31.7 Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCHHHHH Q ss_conf 99999887999899999999999999987798689999605887645554888314565 Q gi|254780343|r 248 NFHLVVDSHMIVLDAHKICNKLERSLEENIGQAIITIHIEPANEVTHGIHVPLKENKNQ 306 (311) Q Consensus 248 ~~~i~v~~~~~~~eah~i~~~ie~~l~~~~~~~~v~ih~ep~~~~~~~~~~~~~e~~~~ 306 (311) ++.|.=...++-.-.+.+..++.++|+++||..++.|.+-+.....-...-..++++.. T Consensus 4 Ei~idK~~~lP~ga~~AL~~EL~kRl~~~fPD~~~~V~Vr~~san~lsv~g~~k~dK~~ 62 (81) T PRK10597 4 EVTIAKTSPLPAGAIDALAGELSRRIQYAFPDNEGHVSVRYAAANNLSVIGATKEDKDR 62 (81) T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHH T ss_conf 99874167699765999999999986634898655068854588873036767756999 No 27 >pfam03780 DUF322 Protein of unknown function (DUF322). This is a family of small proteins. It includes a protein identified as an alkaline shock protein so may be involved in stress response. Probab=69.29 E-value=7.8 Score=17.94 Aligned_cols=52 Identities=17% Similarity=0.369 Sum_probs=32.7 Q ss_pred EEEEEE-CCEEEEEEEEEECCCCCHHH-HHHHHHHHHHHHHHHCC--CCEEEEEEE Q ss_conf 764755-79079999999887999899-99999999999998779--868999960 Q gi|254780343|r 236 LKIRQA-GATFFINFHLVVDSHMIVLD-AHKICNKLERSLEENIG--QAIITIHIE 287 (311) Q Consensus 236 l~~~~~-G~~~~v~~~i~v~~~~~~~e-ah~i~~~ie~~l~~~~~--~~~v~ih~e 287 (311) +++... +....+++++.++...++.+ ++++.+++++.+++--+ +.++.|+++ T Consensus 50 v~V~~~~~~~v~v~l~v~v~YG~~i~~v~~~iq~~V~~~v~~mtgl~V~~VnV~V~ 105 (108) T pfam03780 50 VKVEVGEEGQVAIDLYVIVEYGVNIPEVAKNIQEKVKYAVENMTGLEVSEVNVHVQ 105 (108) T ss_pred CEEEECCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEE T ss_conf 08998679869999999997799889999999999999999987986789999998 No 28 >PRK10568 periplasmic protein; Provisional Probab=68.59 E-value=8 Score=17.84 Aligned_cols=75 Identities=13% Similarity=0.149 Sum_probs=46.1 Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHH----HHHHHHHHHHHHHHHH Q ss_conf 989974044555145899999864158883115157647557907999999988799989----9999999999999987 Q gi|254780343|r 201 SSIKNLMDAAVKPEHLEKIKNIIALNASGSIGIHDLKIRQAGATFFINFHLVVDSHMIVL----DAHKICNKLERSLEEN 276 (311) Q Consensus 201 ~~~~~Ll~~s~~~~~~~~i~~~i~~~~~~V~~v~~l~~~~~G~~~~v~~~i~v~~~~~~~----eah~i~~~ie~~l~~~ 276 (311) +..-.|.|..|++++.++..++ +..++||.+|+| +++|.-++..++. ++ .|..+++..|... T Consensus 86 ~G~VlLsG~V~s~~~k~~A~~i-A~~V~GV~~V~N------------eL~V~~~~~~s~~~~a~D~-~ITtkvKa~Ll~d 151 (203) T PRK10568 86 QKVVTLSGFVESQAQAEEAVKV-AKGVEGVTSVSD------------KLHVRDAKEGSVKGYAGDT-ATTSEIKAKLLAD 151 (203) T ss_pred CCEEEEEEECCCHHHHHHHHHH-HHCCCCCEEEEE------------EEEECCCCCCCCCCCCCHH-HHHHHHHHHHHCC T ss_conf 5889997406999999999999-852898238876------------6897058886501236509-9999999986317 Q ss_pred CCCCEEEEEEECC Q ss_conf 7986899996058 Q gi|254780343|r 277 IGQAIITIHIEPA 289 (311) Q Consensus 277 ~~~~~v~ih~ep~ 289 (311) -.+.-..|.++.. T Consensus 152 ~~v~s~~i~V~T~ 164 (203) T PRK10568 152 DIVPSRKVKVETT 164 (203) T ss_pred CCCCCEEEEEEEE T ss_conf 8877258899996 No 29 >pfam09580 Spore_YhcN_YlaJ Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ). This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain. Probab=68.06 E-value=8.2 Score=17.77 Aligned_cols=67 Identities=10% Similarity=0.141 Sum_probs=44.8 Q ss_pred HHHHHHHHHHCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCC-CCEEEEEEECC Q ss_conf 899999864158883115157647557907999999988799989999999999999998779-86899996058 Q gi|254780343|r 216 LEKIKNIIALNASGSIGIHDLKIRQAGATFFINFHLVVDSHMIVLDAHKICNKLERSLEENIG-QAIITIHIEPA 289 (311) Q Consensus 216 ~~~i~~~i~~~~~~V~~v~~l~~~~~G~~~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~~~-~~~v~ih~ep~ 289 (311) -++|.+.+ ...| +|.+..+--.|...+|-+++. .. .-....++.+++++.+++..| ..++.|--||- T Consensus 68 A~~i~~~~-~~~~---~V~dA~vvVt~~~a~V~v~~~--~~-~~~~~~~ik~~V~~~v~~~~p~~~~VyVs~D~d 135 (169) T pfam09580 68 ADKIARRV-AKLP---EVEDAAVVVTGEEALVAVDLD--NG-ERSLTEEIKKQVKKAVKSVDPRIYNVYVSADPD 135 (169) T ss_pred HHHHHHHH-HCCC---CCCEEEEEEECCEEEEEEECC--CC-CHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHH T ss_conf 99999999-6178---864468999899799999738--86-403589999999999984088865699966989 No 30 >COG3158 Kup K+ transporter [Inorganic ion transport and metabolism] Probab=67.00 E-value=8.6 Score=17.64 Aligned_cols=68 Identities=19% Similarity=0.180 Sum_probs=35.2 Q ss_pred HHHHHHHHHHHHHHHHH---------HHH-HHHHHHHH--HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99727999999999999---------999-99999999--9995489986687241467799998968899998899999 Q gi|254780343|r 32 YVTGFISLLSDGLESIV---------NII-TAIISYFT--LKYAYRPADNTHPFGHQKAEYIAAVVEGLLMTNIALIILY 99 (311) Q Consensus 32 ~~t~S~allada~~s~~---------D~~-~~~~~l~~--~~~s~k~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~i~~ 99 (311) -.||--||-||.-|--- =++ +.++.++| ..+-+.|...+.|| ...-|=+++.--+++...+..+.. T Consensus 229 avTGaEALYADmGHfGr~pI~~AWf~vv~P~L~LNY~GQGA~vL~np~a~~npF--F~~~P~~aliP~viLAT~ATVIAS 306 (627) T COG3158 229 AVTGAEALYADMGHFGRKPIRVAWFFVVLPCLLLNYFGQGALLLSNPEAIGNPF--FLLAPDWALIPLVILATAATVIAS 306 (627) T ss_pred EECCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCH--HHHCHHHHHHHHHHHHHHHHHHHH T ss_conf 205599987401466774388989999999999977354011015842014847--883814289899999999999998 Q ss_pred HH Q ss_conf 99 Q gi|254780343|r 100 ES 101 (311) Q Consensus 100 es 101 (311) ++ T Consensus 307 QA 308 (627) T COG3158 307 QA 308 (627) T ss_pred HH T ss_conf 88 No 31 >pfam00873 ACR_tran AcrB/AcrD/AcrF family. Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein, AcrA, and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer. Probab=65.42 E-value=9.3 Score=17.45 Aligned_cols=64 Identities=11% Similarity=0.093 Sum_probs=26.1 Q ss_pred HHHHHHHHHHHCCCCCCEEEEEEEEEEC----CEEEEEEEEEECCC----CCHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 5899999864158883115157647557----90799999998879----998999999999999999877986 Q gi|254780343|r 215 HLEKIKNIIALNASGSIGIHDLKIRQAG----ATFFINFHLVVDSH----MIVLDAHKICNKLERSLEENIGQA 280 (311) Q Consensus 215 ~~~~i~~~i~~~~~~V~~v~~l~~~~~G----~~~~v~~~i~v~~~----~~~~eah~i~~~ie~~l~~~~~~~ 280 (311) ..+++++.+ ++.|+|.++...-.+..+ +....+..+.+.+. .+-....++.+++++.+.+ +|.. T Consensus 579 ~~~~ie~~l-~~~~~v~~v~~~iG~~~~~~~~~~~~~~~~v~L~~~~~r~~~~~~~~~i~~~~r~~l~~-~pg~ 650 (1021) T pfam00873 579 VLKQVEKIL-KEKPEVESVFAVTGFAFAGDNNGPNSGDVFITLKPWKERPGPEQTVEAIIERLRKALAK-IPGA 650 (1021) T ss_pred HHHHHHHHH-HCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEECCHHHCCCCCCCHHHHHHHHHHHHHC-CCCC T ss_conf 999999998-54999369999965567788888640699999736898588545799999999998730-7881 No 32 >COG1183 PssA Phosphatidylserine synthase [Lipid metabolism] Probab=64.91 E-value=9.5 Score=17.39 Aligned_cols=39 Identities=10% Similarity=0.031 Sum_probs=23.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999997279999999999999999999999 Q gi|254780343|r 20 SAAITALKIIAWYVTGFISLLSDGLESIVNIITAIISYF 58 (311) Q Consensus 20 n~~~~~~k~~~g~~t~S~allada~~s~~D~~~~~~~l~ 58 (311) ..+.=....-+.-.+|..+.+..-+||++|.++..+.=. T Consensus 45 A~i~DglDG~VAR~~~~~s~~G~~lDSLaD~VsFgVaPA 83 (234) T COG1183 45 ALILDGLDGRVARKLNAKSAFGAELDSLADLVSFGVAPA 83 (234) T ss_pred HHHHCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 999806531998760786168887757988988506789 No 33 >TIGR00473 pssA CDP-diacylglycerol--serine O-phosphatidyltransferase; InterPro: IPR004533 This enzyme, CDP-diacylglycerol--serine O-phosphatidyltransferase, is involved in phospholipid biosynthesis catalyzing the reaction CDP-diacylglycerol + L-serine = CMP + L-1-phosphatidylserine. Members of this family do not bear any significant sequence similarity to the corresponding Escherichia coli protein.; GO: 0003882 CDP-diacylglycerol-serine O-phosphatidyltransferase activity, 0008654 phospholipid biosynthetic process, 0046341 CDP-diacylglycerol metabolic process, 0016020 membrane. Probab=60.51 E-value=11 Score=16.89 Aligned_cols=50 Identities=18% Similarity=0.048 Sum_probs=27.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999972--7999999999999999999999999 Q gi|254780343|r 11 RMALWGIPISAAITALKIIAWYVTG--FISLLSDGLESIVNIITAIISYFTL 60 (311) Q Consensus 11 r~~~~~~~~n~~~~~~k~~~g~~t~--S~allada~~s~~D~~~~~~~l~~~ 60 (311) ..+.+-+...+.+=..-..++-.|| ..+-+-.-+||++|+++-.++=-.+ T Consensus 28 ~~a~~li~ls~~~D~LDG~vARktnri~~S~fG~ELDSLAD~vsFGVAPa~l 79 (174) T TIGR00473 28 VEACLLILLSMIFDFLDGRVARKTNRITVSDFGKELDSLADVVSFGVAPALL 79 (174) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 9999999999984101567888635643255664113477889988899999 No 34 >PRK11023 hypothetical protein; Provisional Probab=58.10 E-value=12 Score=16.63 Aligned_cols=71 Identities=14% Similarity=0.151 Sum_probs=42.6 Q ss_pred HHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 74044555145899999864158883115157647557907999999988799989999999999999998779868999 Q gi|254780343|r 205 NLMDAAVKPEHLEKIKNIIALNASGSIGIHDLKIRQAGATFFINFHLVVDSHMIVLDAHKICNKLERSLEENIGQAIITI 284 (311) Q Consensus 205 ~Ll~~s~~~~~~~~i~~~i~~~~~~V~~v~~l~~~~~G~~~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~~~~~~v~i 284 (311) .|.|..|+++..++..+.. .+.|||++|+|-- +.|+..-.. ....++ -|..+++.+|...-.+.-..+ T Consensus 80 LLtGqV~~~~~k~~a~~ia-~~~~gVr~V~Nei--~V~~~~s~~--------~~a~D~-~Ittkvk~~ll~~~~v~s~~i 147 (191) T PRK11023 80 LLIGQSPNAELSARAKQIA-MGVEGVTEVYNEI--RQGQPIGLG--------QASKDT-WITTKVRSQLLTSDSVKSSNV 147 (191) T ss_pred EEEEEECCHHHHHHHHHHH-HCCCCCEEEEEEE--EECCCCCCC--------CEEECH-HHHHHHHHHHHHCCCCCCCEE T ss_conf 9999979999999999998-4668842899999--966887644--------220029-899999999873779776378 Q ss_pred EEE Q ss_conf 960 Q gi|254780343|r 285 HIE 287 (311) Q Consensus 285 h~e 287 (311) .++ T Consensus 148 kV~ 150 (191) T PRK11023 148 KVT 150 (191) T ss_pred EEE T ss_conf 999 No 35 >PRK10745 trkD potassium transport protein Kup; Provisional Probab=57.67 E-value=13 Score=16.58 Aligned_cols=75 Identities=20% Similarity=0.247 Sum_probs=40.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------HHH-HHHHHHHH--HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 999999999727999999999999---------999-99999999--999548998668724146779999896889999 Q gi|254780343|r 25 ALKIIAWYVTGFISLLSDGLESIV---------NII-TAIISYFT--LKYAYRPADNTHPFGHQKAEYIAAVVEGLLMTN 92 (311) Q Consensus 25 ~~k~~~g~~t~S~allada~~s~~---------D~~-~~~~~l~~--~~~s~k~~d~~~pyG~~r~E~l~~l~~~~~l~~ 92 (311) +...+.-..||.-||.||.-|--- =+. +.++.++| ..+.+.|.+.+.|| .+.-|=+.+.-.+++.. T Consensus 217 ~LG~V~L~vTG~EALyADmGHfg~~~Ir~aw~~~v~P~L~LnY~GQgA~ll~~p~~~~npF--f~~~P~~~~~p~v~lAt 294 (622) T PRK10745 217 ALGAVVLSITGVEALYADMGHFGKFPIRLAWFTVVLPSLVLNYFGQGALLLKNPEAIKNPF--FLLAPDWALIPLLILAT 294 (622) T ss_pred EECCHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCH--HHCCCHHHHHHHHHHHH T ss_conf 2020331024388886421445763362416999999999986106888860930323857--87085255789999999 Q ss_pred HHHHHHHHH Q ss_conf 889999999 Q gi|254780343|r 93 IALIILYES 101 (311) Q Consensus 93 ~~~~i~~es 101 (311) ++..+..++ T Consensus 295 ~AtiIASQA 303 (622) T PRK10745 295 LATVIASQA 303 (622) T ss_pred HHHHHHHHH T ss_conf 999998889 No 36 >PRK02983 lysS lysyl-tRNA synthetase; Provisional Probab=54.22 E-value=14 Score=16.22 Aligned_cols=44 Identities=16% Similarity=0.265 Sum_probs=19.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH Q ss_conf 46876689999999999899999989974044555145899999864 Q gi|254780343|r 178 VLDSIIACFMACNILYQGCKVISSSIKNLMDAAVKPEHLEKIKNIIA 224 (311) Q Consensus 178 ~~D~i~ai~i~~~i~~~~~~~~~~~~~~Ll~~s~~~~~~~~i~~~i~ 224 (311) |++.+.+++-++-++...+-++|..-..- ...+++..++++.+. T Consensus 205 ~v~~~~~~~~~~~l~~a~~~~~r~~~~~~---~~t~~de~~~R~Ll~ 248 (1099) T PRK02983 205 FLNALLGLFGALALIAAAIVLFRSQRADN---ALTGEDESAIRGLLE 248 (1099) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCC---CCCHHHHHHHHHHHH T ss_conf 99999999999999999999946567632---268767999999999 No 37 >COG1279 Lysine efflux permease [General function prediction only] Probab=50.97 E-value=16 Score=15.90 Aligned_cols=61 Identities=15% Similarity=0.011 Sum_probs=31.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 279999999999999999999999999954899866872414677999989688999988999999999 Q gi|254780343|r 35 GFISLLSDGLESIVNIITAIISYFTLKYAYRPADNTHPFGHQKAEYIAAVVEGLLMTNIALIILYESWH 103 (311) Q Consensus 35 ~S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~i~~es~~ 103 (311) .+..+..-+.-+++|.+-.....++.-.--.+ +| ++..+.-..-..++...|......+.. T Consensus 33 r~~~l~~~~~c~i~D~~Li~~gv~G~~~li~~----~p----~l~~i~~~~G~~FLl~yg~~a~~~a~~ 93 (202) T COG1279 33 REYVLPIALLCAISDIVLISAGVFGVGALIAK----SP----WLLLIVRWGGAAFLLYYGLLALKSAPR 93 (202) T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CH----HHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 62199999999999999999999889999986----78----999999999899999999999985066 No 38 >pfam09877 DUF2104 Predicted membrane protein (DUF2104). This domain, found in various hypothetical archaeal proteins, has no known function. Probab=50.37 E-value=17 Score=15.84 Aligned_cols=26 Identities=15% Similarity=0.390 Sum_probs=12.5 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHH Q ss_conf 87765302772246876689999999 Q gi|254780343|r 166 CGLLLVLITEYTVLDSIIACFMACNI 191 (311) Q Consensus 166 i~~~~~~~~~~~~~D~i~ai~i~~~i 191 (311) ++..+..-+|+.-.+...++++++++ T Consensus 70 lgf~lGMRPGYGr~E~~~G~iiA~i~ 95 (100) T pfam09877 70 LGFVLGMRPGYGRIETVLGLIIALIL 95 (100) T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHH T ss_conf 85012568898736899999999999 No 39 >pfam06570 DUF1129 Protein of unknown function (DUF1129). This family consists of several hypothetical bacterial proteins of unknown function. Probab=49.64 E-value=17 Score=15.77 Aligned_cols=56 Identities=5% Similarity=0.045 Sum_probs=29.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CHH-HHHHHHHHHHHHHHHHHHH Q ss_conf 9989688999988999999999986300223221--026-7888872012467999998 Q gi|254780343|r 82 AAVVEGLLMTNIALIILYESWHNMSHSPSNDFSI--MGL-FIGFMANIISLFWGKWLIY 137 (311) Q Consensus 82 ~~l~~~~~l~~~~~~i~~es~~~l~~~~~~~~~~--~~~-~i~~~~~~v~~~~~~~~~~ 137 (311) +-+..--.+++.+++.+..++..++++...+... ..+ ..++++.+.....+.+..+ T Consensus 77 w~~alD~~Ll~~~if~~m~Gi~~~Fs~~~~~~~~Gi~tlil~~~~gG~~m~~~~~~l~~ 135 (206) T pfam06570 77 WLMALDNSLLFLGIFALMNGIMALFSKNAQPAYSGITTLLLTSLVGGLAMYYMYRYLYR 135 (206) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 89999982899999999999999947888877552999999999999999999999641 No 40 >KOG2877 consensus Probab=48.38 E-value=18 Score=15.65 Aligned_cols=29 Identities=14% Similarity=0.098 Sum_probs=18.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 72799999999999999999999999999 Q gi|254780343|r 34 TGFISLLSDGLESIVNIITAIISYFTLKY 62 (311) Q Consensus 34 t~S~allada~~s~~D~~~~~~~l~~~~~ 62 (311) |||.+=+.+-.|--+|..+....-.+... T Consensus 111 TnsSsPLGELFDHG~DS~stvf~~l~~~s 139 (389) T KOG2877 111 TNSSSPLGELFDHGCDSISTVFVTLAVCS 139 (389) T ss_pred CCCCCCCHHHHCCCCHHHHHHHHHHHHHH T ss_conf 78999737665135105788999999999 No 41 >PRK02047 hypothetical protein; Provisional Probab=47.63 E-value=18 Score=15.57 Aligned_cols=56 Identities=13% Similarity=0.202 Sum_probs=34.9 Q ss_pred HCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHH Q ss_conf 04455514589999986415888311515764755790799999998879998999999 Q gi|254780343|r 207 MDAAVKPEHLEKIKNIIALNASGSIGIHDLKIRQAGATFFINFHLVVDSHMIVLDAHKI 265 (311) Q Consensus 207 l~~s~~~~~~~~i~~~i~~~~~~V~~v~~l~~~~~G~~~~v~~~i~v~~~~~~~eah~i 265 (311) ||. ..++..+.|.+++.++.|+... .++..+.+....|+++.+.+... +-++.+.+ T Consensus 22 mG~-a~~~~~~~V~~iv~~h~p~~~~-~~v~~r~S~~G~Y~Svtv~i~at-s~~QLd~i 77 (91) T PRK02047 22 MGK-AHPEFADTIFKVVSVHDPEFDL-EKIEERPSSGGNYTGLTITVRAT-SREQLDNI 77 (91) T ss_pred EEC-CCCCHHHHHHHHHHHHCCCCCC-CCEEECCCCCCEEEEEEEEEEEC-CHHHHHHH T ss_conf 975-8710789999999997799980-33787149998689999999989-99999999 No 42 >pfam10934 DUF2634 Protein of unknown function (DUF2634). Some members in this family of proteins are annotated as phage related, xkdS however currently there is no known function. Probab=47.58 E-value=18 Score=15.57 Aligned_cols=51 Identities=10% Similarity=0.325 Sum_probs=36.9 Q ss_pred HHHHHHCCCCC-----HHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEEEEEEEEEE Q ss_conf 89974044555-----14589999986415888311515764755790799999998 Q gi|254780343|r 202 SIKNLMDAAVK-----PEHLEKIKNIIALNASGSIGIHDLKIRQAGATFFINFHLVV 253 (311) Q Consensus 202 ~~~~Ll~~s~~-----~~~~~~i~~~i~~~~~~V~~v~~l~~~~~G~~~~v~~~i~v 253 (311) -+..|+|..-+ .+....|++.+ +..|.+.+|++..+...|+...++..|.- T Consensus 52 el~~liG~~~~~~~~~sEi~R~I~EaL-l~d~rI~~V~nf~f~~~~~~l~v~f~V~t 107 (112) T pfam10934 52 ELEDLIGKIYSKDYVESEVKRMIEEAL-LVDPRIKDVDNFEFEKEKDSLYVSFTVIT 107 (112) T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHH-HCCCCCCEEEEEEEEEECCEEEEEEEEEE T ss_conf 799984777898999999999999998-54987443742899997899999999999 No 43 >pfam02038 ATP1G1_PLM_MAT8 ATP1G1/PLM/MAT8 family. Probab=46.61 E-value=19 Score=15.47 Aligned_cols=34 Identities=6% Similarity=0.200 Sum_probs=25.7 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 98668724146779999896889999889999999 Q gi|254780343|r 67 ADNTHPFGHQKAEYIAAVVEGLLMTNIALIILYES 101 (311) Q Consensus 67 ~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~i~~es 101 (311) .++.|.|-|..+.. ++|+.+.+++.+|+.++... T Consensus 4 ~~dpF~YDy~tLRi-gGLi~a~vlfi~Gi~iils~ 37 (51) T pfam02038 4 KEDPFYYDYETLRI-GGLIFAGVLFIVGIIIILSG 37 (51) T ss_pred CCCCCCCCHHHHHH-CHHHHHHHHHHHHHHHHHCC T ss_conf 57886244589851-00599999999999999858 No 44 >PRK10054 putative MFS-type transporter YdeE; Provisional Probab=45.24 E-value=20 Score=15.34 Aligned_cols=42 Identities=12% Similarity=0.131 Sum_probs=24.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH Q ss_conf 876689999999999899999989974044555145899999 Q gi|254780343|r 180 DSIIACFMACNILYQGCKVISSSIKNLMDAAVKPEHLEKIKN 221 (311) Q Consensus 180 D~i~ai~i~~~i~~~~~~~~~~~~~~Ll~~s~~~~~~~~i~~ 221 (311) +....++++..++-.|=-+..-+...+.+.-.|++...+... T Consensus 296 ~~~~~~~i~~~ifTiGE~i~~P~~~~~v~~laP~~~RG~Y~g 337 (395) T PRK10054 296 NNLLFWGMSAAVFTVGEIIYAPGEYMLIDNIAPPGMKASYFS 337 (395) T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHH T ss_conf 789999999999999999986559999987399340325898 No 45 >cd06159 S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group appears to be limited to Archaeal S2P/M50s homologs with additional putative N-terminal transmembrane spanning regions, relative to the core protein, and either one or two PDZ domains present. Probab=42.10 E-value=22 Score=15.03 Aligned_cols=148 Identities=17% Similarity=0.148 Sum_probs=71.0 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------------CCCHHHHHHHHHHHHHHHHH-----HHH Q ss_conf 4146779999896889999889999999999863002232------------21026788887201246799-----999 Q gi|254780343|r 74 GHQKAEYIAAVVEGLLMTNIALIILYESWHNMSHSPSNDF------------SIMGLFIGFMANIISLFWGK-----WLI 136 (311) Q Consensus 74 G~~r~E~l~~l~~~~~l~~~~~~i~~es~~~l~~~~~~~~------------~~~~~~i~~~~~~v~~~~~~-----~~~ 136 (311) .|....+++..+.-+.|.++...++..++..+.+|++... ..+++..+++++++.....- ..+ T Consensus 54 fWR~~g~igI~~~~i~Mi~~~~~ll~~~~~~l~~pp~~~~~p~~~l~iPGv~~~ip~~~~~~al~v~~vvHE~~Hgi~ar 133 (263) T cd06159 54 FWRAFGNIGIPIAFVGMIFMLLLILLSAIIILSGPPAPLNAPRNVLVIPGVNIFIPLPYGIIALVVGVVVHELSHGILAR 133 (263) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 67877753599999999999999999999984589888887654442479875533789999999999999888899999 Q ss_pred HHHHCCCCHHH-------------------HHHHHH----HHHHHHHHHH-HHHHHHHHHCCCCHHHHHHHHHHHHH-HH Q ss_conf 87410330577-------------------875998----6653788788-88877653027722468766899999-99 Q gi|254780343|r 137 YSGEKNHSAAF-------------------KANGQH----FVADVVMSAG-VLCGLLLVLITEYTVLDSIIACFMAC-NI 191 (311) Q Consensus 137 ~~~~~~~s~~l-------------------~a~~~~----~~~D~~~s~~-vii~~~~~~~~~~~~~D~i~ai~i~~-~i 191 (311) ..+-+.+|..+ ++.... .-....+++. .+++..+..+.+..|++-..+++-++ .+ T Consensus 134 ~~~i~vkS~G~ll~~ip~GAFvEpdeee~~~a~~~~r~ri~aAG~~~N~v~~~i~~~l~fl~W~~~iNf~lglfN~lPa~ 213 (263) T cd06159 134 VEGIKVKSGGLLLLIIPPGAFVEPDEEELNKADRRIRLRIFAAGVTANFVVALIAFALFFLYWIFWINFLLGLFNCLPAI 213 (263) T ss_pred HCCCEECCCHHHHHHHCCCCCCCCCHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 81863301156786616422358897998528815453320036099899999999999999999999999998357666 Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHH Q ss_conf 999899999989974044555145899999 Q gi|254780343|r 192 LYQGCKVISSSIKNLMDAAVKPEHLEKIKN 221 (311) Q Consensus 192 ~~~~~~~~~~~~~~Ll~~s~~~~~~~~i~~ 221 (311) -.-|.++++|....+.++.+++...+..+. T Consensus 214 plDGg~v~~~~~~~~~~r~~~~~~~~~~~~ 243 (263) T cd06159 214 PLDGGHVFRDLLEALLRRFPSEKAERVVNA 243 (263) T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHH T ss_conf 576067999989999853875117889999 No 46 >PRK08238 hypothetical protein; Validated Probab=40.08 E-value=24 Score=14.84 Aligned_cols=33 Identities=12% Similarity=0.043 Sum_probs=21.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 468766899999999998999999899740445 Q gi|254780343|r 178 VLDSIIACFMACNILYQGCKVISSSIKNLMDAA 210 (311) Q Consensus 178 ~~D~i~ai~i~~~i~~~~~~~~~~~~~~Ll~~s 210 (311) |-.|-.-..++.++++.-.++.+-+.+.-|+.- T Consensus 423 Y~~p~~lW~~~p~ll~Wi~R~w~~a~rg~m~dD 455 (481) T PRK08238 423 YAHPQLLWLACPILLYWISRVWLLAHRGEMHDD 455 (481) T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 078879999999999999999999976987899 No 47 >PRK10369 heme lyase subunit NrfE; Provisional Probab=39.17 E-value=25 Score=14.75 Aligned_cols=18 Identities=11% Similarity=0.329 Sum_probs=7.7 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 896889999889999999 Q gi|254780343|r 84 VVEGLLMTNIALIILYES 101 (311) Q Consensus 84 l~~~~~l~~~~~~i~~es 101 (311) .+.+..+.+.|.++...+ T Consensus 262 ~i~tF~lsl~GTFlVRSG 279 (552) T PRK10369 262 AIVTLMLSLLGTLIVRSG 279 (552) T ss_pred HHHHHHHHHHHHHHHHCC T ss_conf 999999999876722135 No 48 >PRK11646 multidrug resistance protein MdtH; Provisional Probab=38.18 E-value=26 Score=14.65 Aligned_cols=44 Identities=9% Similarity=0.165 Sum_probs=27.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH Q ss_conf 24687668999999999989999998997404455514589999 Q gi|254780343|r 177 TVLDSIIACFMACNILYQGCKVISSSIKNLMDAAVKPEHLEKIK 220 (311) Q Consensus 177 ~~~D~i~ai~i~~~i~~~~~~~~~~~~~~Ll~~s~~~~~~~~i~ 220 (311) .+.+....++++..++..|--+..-+...+.+.-.|++...+.. T Consensus 292 ~~~~~~~~~~i~~~lftiGe~l~~P~~~s~va~lap~~~rG~y~ 335 (400) T PRK11646 292 GMVSNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYM 335 (400) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHH T ss_conf 99988999999999999999999754899999838965432376 No 49 >pfam06181 DUF989 Protein of unknown function (DUF989). This family consists of several hypothetical bacterial proteins of unknown function. The haem-binding domain towards the C-terminus has been merged into Cytochrome_C, pfam00034. Probab=36.25 E-value=27 Score=14.46 Aligned_cols=137 Identities=12% Similarity=0.061 Sum_probs=58.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH Q ss_conf 1467799998968899998899999999998630022322102-678888720124679999987410330577875998 Q gi|254780343|r 75 HQKAEYIAAVVEGLLMTNIALIILYESWHNMSHSPSNDFSIMG-LFIGFMANIISLFWGKWLIYSGEKNHSAAFKANGQH 153 (311) Q Consensus 75 ~~r~E~l~~l~~~~~l~~~~~~i~~es~~~l~~~~~~~~~~~~-~~i~~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~ 153 (311) +-|=|--+.-.+|+.++.+-.+.--+.. +++|...+.++.. +.+++.++++..+.+-.+-| ..-.+++.+. T Consensus 79 WFKWeaY~TWlSG~aLL~vvYy~~a~~y--LiD~~v~dls~~~Ai~isl~~l~~gw~vYd~lcr-s~l~~~~~~~----- 150 (299) T pfam06181 79 WFKWEAYTTWLSGFALLTVVYYVGAELY--LIDPSVADLSPWQAIAIGLGSLVVGWLVYDLLCR-SPLGKRPTLL----- 150 (299) T ss_pred EEEHHHHHHHHHHHHHHHHHHHHCCCEE--EECCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCHHH----- T ss_conf 8502129999999999999998278537--7661012368899999999999999999999996-3201484089----- Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH-CCCCCHHHHHHHHH Q ss_conf 6653788788888776530277224687668999999999989----99999899740-44555145899999 Q gi|254780343|r 154 FVADVVMSAGVLCGLLLVLITEYTVLDSIIACFMACNILYQGC----KVISSSIKNLM-DAAVKPEHLEKIKN 221 (311) Q Consensus 154 ~~~D~~~s~~vii~~~~~~~~~~~~~D~i~ai~i~~~i~~~~~----~~~~~~~~~Ll-~~s~~~~~~~~i~~ 221 (311) .-++..+.++.+....+.++-.-.=--.+-+++-+|....+ |-=|.-...+. |++||++.-++-++ T Consensus 151 --~~~~~~~~~~~~~~~~q~FsgRaAfihvGA~~gTiM~aNVFfvIIP~QrkvV~al~~G~~pDp~~g~~aK~ 221 (299) T pfam06181 151 --GAVLFVLLVAAAYGLTQVFSGRAAFLHVGAMIATIMSANVFFVIIPNQRKVVAALKAGRTPDPKLGKRAKQ 221 (299) T ss_pred --HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEEEEEECCHHHHHHHHHCCCCCCCHHHHHHHH T ss_conf --99999999999999987714068999999999999857346898278389999998599999157788865 No 50 >PRK09977 putative Mg(2+) transport ATPase; Provisional Probab=36.07 E-value=28 Score=14.44 Aligned_cols=59 Identities=10% Similarity=0.098 Sum_probs=37.1 Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCE Q ss_conf 145899999864158883115157647557907999999988799989999999999999998779868 Q gi|254780343|r 213 PEHLEKIKNIIALNASGSIGIHDLKIRQAGATFFINFHLVVDSHMIVLDAHKICNKLERSLEENIGQAI 281 (311) Q Consensus 213 ~~~~~~i~~~i~~~~~~V~~v~~l~~~~~G~~~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~~~~~~ 281 (311) ++...++.+.+... -.+++++++.+..++..+++.+.++++.++.+ +-+.|++..++.. T Consensus 153 ~~~~~~i~~~l~~~---~i~i~~v~i~~~~~~~~v~l~v~~~~~~~~~d-------l~~~L~~i~gV~~ 211 (215) T PRK09977 153 NGNTVSMLDWFKQQ---KIKTDLVSLQENEDHEVVTIDITLHATTSIED-------LLRLLKGMAGVKG 211 (215) T ss_pred CCCHHHHHHHHHHC---CCEEEEEEEEECCCCCEEEEEEEECCCCCHHH-------HHHHHHCCCCCEE T ss_conf 58277999999984---97589999898288858999999779874999-------9999855999358 No 51 >pfam07423 DUF1510 Protein of unknown function (DUF1510). This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown. Probab=35.58 E-value=28 Score=14.39 Aligned_cols=23 Identities=13% Similarity=0.218 Sum_probs=9.9 Q ss_pred CEEEEEEEEEECCEEEEEEEEEE Q ss_conf 11515764755790799999998 Q gi|254780343|r 231 IGIHDLKIRQAGATFFINFHLVV 253 (311) Q Consensus 231 ~~v~~l~~~~~G~~~~v~~~i~v 253 (311) ..+.+++....|..+.|.++.+= T Consensus 180 kA~GtVsdK~~~~~Y~V~I~WVd 202 (214) T pfam07423 180 KAIGTVSDKDSGKKYRVYIEWVD 202 (214) T ss_pred CEEEEEECCCCCCEEEEEEEEEC T ss_conf 22799602778846899999862 No 52 >COG4035 Predicted membrane protein [Function unknown] Probab=35.29 E-value=28 Score=14.36 Aligned_cols=26 Identities=23% Similarity=0.511 Sum_probs=11.3 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHH Q ss_conf 88776530277224687668999999 Q gi|254780343|r 165 LCGLLLVLITEYTVLDSIIACFMACN 190 (311) Q Consensus 165 ii~~~~~~~~~~~~~D~i~ai~i~~~ 190 (311) +++..+..-+|+.-.+.+.+-+.+++ T Consensus 75 lig~v~gMRPGYGR~Etv~Gt~LA~l 100 (108) T COG4035 75 LIGFVLGMRPGYGRVETVVGTFLAVL 100 (108) T ss_pred HHHHHHCCCCCCCEEEHHHHHHHHHH T ss_conf 98875046788764200388999999 No 53 >PRK08601 NADH dehydrogenase subunit 5; Validated Probab=35.26 E-value=28 Score=14.36 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=16.6 Q ss_pred CCCCCCCHHHHH------HHHHHHHHHHHHHHHHHHHHH Q ss_conf 866872414677------999989688999988999999 Q gi|254780343|r 68 DNTHPFGHQKAE------YIAAVVEGLLMTNIALIILYE 100 (311) Q Consensus 68 d~~~pyG~~r~E------~l~~l~~~~~l~~~~~~i~~e 100 (311) +.++||-.+=-| |.+++.-+. +...|.+++.. T Consensus 215 sAQ~P~h~WLp~am~~PTPVSAl~HA~-mV~AGv~ll~R 252 (506) T PRK08601 215 AAQWPFHRWLIESAVAPTPVSAIMHAG-IVNAGGVMLTR 252 (506) T ss_pred HCCCCCHHHHHHHHCCCCCHHHHHHHH-HHHHHHHHHHH T ss_conf 411753455578766898099999999-99988999999 No 54 >TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase; InterPro: IPR004558 This family represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. HemN catalyses the anaerobic transformation of coproporhyrinogen-III into protoporphyrinogen-IX during porphyrin biosynthesis. Several species, including Escherichia coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity, IPR004559 from INTERPRO. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterised protein.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin biosynthetic process, 0005737 cytoplasm. Probab=33.50 E-value=30 Score=14.18 Aligned_cols=70 Identities=21% Similarity=0.204 Sum_probs=45.0 Q ss_pred CHHHHHHHHHHHHHCCCCC---CEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC Q ss_conf 5145899999864158883---1151576475579079999999887999899999999999999987798689999605 Q gi|254780343|r 212 KPEHLEKIKNIIALNASGS---IGIHDLKIRQAGATFFINFHLVVDSHMIVLDAHKICNKLERSLEENIGQAIITIHIEP 288 (311) Q Consensus 212 ~~~~~~~i~~~i~~~~~~V---~~v~~l~~~~~G~~~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~~~~~~v~ih~ep 288 (311) .+..++.+.+.+++-.|-+ +.|..+| .|... |.-+|..+++.+.+.+++...+--...++.|++|| T Consensus 81 ~~~YL~~l~ke~~l~~~~~d~~R~V~QLH---wGGGT--------P~YL~~~Q~~~l~~~i~~~F~nf~~daEiSiEidP 149 (462) T TIGR00538 81 KDPYLEALKKEIALVAPLLDKDREVAQLH---WGGGT--------PTYLSPEQIEELMKEIREAFPNFSEDAEISIEIDP 149 (462) T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEE---CCCCC--------CCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECC T ss_conf 01679999999999877752489468876---27898--------33378899999999999873201158447765237 Q ss_pred CCCC Q ss_conf 8876 Q gi|254780343|r 289 ANEV 292 (311) Q Consensus 289 ~~~~ 292 (311) ++-. T Consensus 150 R~~~ 153 (462) T TIGR00538 150 RYLT 153 (462) T ss_pred CCCC T ss_conf 4137 No 55 >TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon. Probab=32.22 E-value=32 Score=14.05 Aligned_cols=14 Identities=21% Similarity=0.273 Sum_probs=6.1 Q ss_pred HHHHHHHHCCCCCH Q ss_conf 99899740445551 Q gi|254780343|r 200 SSSIKNLMDAAVKP 213 (311) Q Consensus 200 ~~~~~~Ll~~s~~~ 213 (311) .|+...+-|++.++ T Consensus 229 ~Da~~h~aEE~~np 242 (475) T TIGR03428 229 FGSAGELSEETKNP 242 (475) T ss_pred HHHHHHHHHHHCCC T ss_conf 77888768885185 No 56 >PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional Probab=31.83 E-value=32 Score=14.01 Aligned_cols=66 Identities=23% Similarity=0.344 Sum_probs=41.4 Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 4555145899999864158883115157647557907999999988799989999999999999998779868999 Q gi|254780343|r 209 AAVKPEHLEKIKNIIALNASGSIGIHDLKIRQAGATFFINFHLVVDSHMIVLDAHKICNKLERSLEENIGQAIITI 284 (311) Q Consensus 209 ~s~~~~~~~~i~~~i~~~~~~V~~v~~l~~~~~G~~~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~~~~~~v~i 284 (311) ....|+..++|.+.+ ++ -|. .+..+.....++.-.+.+.+.|+.+-+ .+.+.+.|.+.+++..+.+ T Consensus 10 a~~rPevLERiLRVv-RH-RGF-~v~~m~m~~~~~~~~~~i~ltV~SdR~-------i~lL~~QL~KL~DV~~v~v 75 (76) T PRK11152 10 ARFRPEVLERVLRVV-RH-RGF-QVCQMNMTANSDAQNINIELTVASERA-------IDLLSSQLNKLVDVAHVEI 75 (76) T ss_pred EECCCHHHEEEEEEE-EE-CCE-EEEEEEEEECCCCCEEEEEEEEECCCH-------HHHHHHHHHHHCCEEEEEE T ss_conf 706977831263478-41-684-999976267389988999999905773-------9999998874271689996 No 57 >TIGR00900 2A0121 H+ Antiporter protein; InterPro: IPR004751 Drug antiporters which use the proton motive force for the active efflux of the drug .; GO: 0016021 integral to membrane. Probab=31.74 E-value=32 Score=14.00 Aligned_cols=188 Identities=15% Similarity=0.174 Sum_probs=98.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH---HHHHHHHHHHH-------- Q ss_conf 9999999999999727999999999999999999999999995489986687241467---79999896889-------- Q gi|254780343|r 21 AAITALKIIAWYVTGFISLLSDGLESIVNIITAIISYFTLKYAYRPADNTHPFGHQKA---EYIAAVVEGLL-------- 89 (311) Q Consensus 21 ~~~~~~k~~~g~~t~S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r~---E~l~~l~~~~~-------- 89 (311) +.=++..+..++..-+.++..|++ -.+.+...++..|.=.+++.+++++-+.|- ..+.-+..|+- T Consensus 151 vgPgigg~~~~~~g~~~~~~~~a~----~F~~s~~l~~~~r~p~~~~~~~~~~~~rkts~~~~~rd~~eG~~~~~~~~~L 226 (387) T TIGR00900 151 VGPGIGGLLYATLGIKWAILVDAV----GFLISALLIVSVRIPEKAASEIEPLSERKTSLKAVLRDILEGLKFVLKNKVL 226 (387) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHH T ss_conf 679999999999999999999999----9999999986505766678888887525658999999999999999707689 Q ss_pred HHHHHHHHHHH--------HH-----HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 99988999999--------99-----998630022322102678888720124679999987410330577875998665 Q gi|254780343|r 90 MTNIALIILYE--------SW-----HNMSHSPSNDFSIMGLFIGFMANIISLFWGKWLIYSGEKNHSAAFKANGQHFVA 156 (311) Q Consensus 90 l~~~~~~i~~e--------s~-----~~l~~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~ 156 (311) ..+....++.. .+ .+.++.++.+.++.....++.+++.++....++++..+|..+... T Consensus 227 ~~l~~~~~~~~~~~~p~~~~l~P~~~~~~~~~~~~~~G~~~~af~~G~l~G~L~~~~~L~~~~~~~~~r~~--------- 297 (387) T TIGR00900 227 RTLLLLALLFNLVFAPIIVVLFPYVTSKYLNRTSVHVGWVLAAFGLGALLGALLLGSILRRLLGRYFKRIA--------- 297 (387) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH--------- T ss_conf 99999999999985127887630321444078622567999999999999999999999887611343489--------- Q ss_pred HHHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH Q ss_conf 37887888887765302772246--87668999999999989999998997404455514589999986 Q gi|254780343|r 157 DVVMSAGVLCGLLLVLITEYTVL--DSIIACFMACNILYQGCKVISSSIKNLMDAAVKPEHLEKIKNII 223 (311) Q Consensus 157 D~~~s~~vii~~~~~~~~~~~~~--D~i~ai~i~~~i~~~~~~~~~~~~~~Ll~~s~~~~~~~~i~~~i 223 (311) +.+.++.+..+.....++..- ...-.+..+.+.+..+.....--...+++++.++|.+-++-... T Consensus 298 --l~~~a~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~q~~v~~~~~GRV~~~~ 364 (387) T TIGR00900 298 --LITGAVLVIGLAILVVGLLPPRNSGFLLLLVLAFAIGVGVGLINVPIGTLLQRSVPAELLGRVFGLQ 364 (387) T ss_pred --HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf --9999999999998987623896148999999999864203455877887888750078515899999 No 58 >cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in Probab=31.09 E-value=33 Score=13.93 Aligned_cols=48 Identities=19% Similarity=0.271 Sum_probs=32.8 Q ss_pred CHHHHHHHHHHHHHCCCCCCEEEEEEEEEE-----CC-EEEEEEEEEECCCCCHHHH Q ss_conf 514589999986415888311515764755-----79-0799999998879998999 Q gi|254780343|r 212 KPEHLEKIKNIIALNASGSIGIHDLKIRQA-----GA-TFFINFHLVVDSHMIVLDA 262 (311) Q Consensus 212 ~~~~~~~i~~~i~~~~~~V~~v~~l~~~~~-----G~-~~~v~~~i~v~~~~~~~ea 262 (311) .+-...++.+.++.+ + .++.++.++.. |. -+.+.+.+.+|++.++.+. T Consensus 9 rpGIv~~it~~La~~--~-inI~~l~t~~~~a~~sg~~lF~a~~~v~lP~~~~~~~L 62 (81) T cd04869 9 RPGIVHEVTQFLAQR--N-INIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDAL 62 (81) T ss_pred CCCHHHHHHHHHHHC--C-CCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCCHHHH T ss_conf 988799999999986--9-98146687776399998103689999937999999999 No 59 >PRK11049 D-alanine/D-serine/glycine permease; Provisional Probab=30.76 E-value=34 Score=13.89 Aligned_cols=44 Identities=11% Similarity=0.036 Sum_probs=19.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH Q ss_conf 46876689999999999899999989974044555145899999 Q gi|254780343|r 178 VLDSIIACFMACNILYQGCKVISSSIKNLMDAAVKPEHLEKIKN 221 (311) Q Consensus 178 ~~D~i~ai~i~~~i~~~~~~~~~~~~~~Ll~~s~~~~~~~~i~~ 221 (311) +...+..+++..-++-.+-..+..+-|.|-..+-|....+...+ T Consensus 293 ~~~~ii~~~~l~s~~s~~n~~~~~~sR~lyamar~G~lP~~f~~ 336 (469) T PRK11049 293 AAASVINFVVLTSAASSANSGVFSTSRMLFGLAQEGVAPKAFAK 336 (469) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH T ss_conf 69999999999999999999999999999998708997789875 No 60 >PRK09874 drug efflux system protein MdtG; Provisional Probab=30.65 E-value=34 Score=13.88 Aligned_cols=33 Identities=0% Similarity=-0.162 Sum_probs=24.0 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 367889999999999999999999999999727 Q gi|254780343|r 4 DDQNNMIRMALWGIPISAAITALKIIAWYVTGF 36 (311) Q Consensus 4 ~~~~~~~r~~~~~~~~n~~~~~~k~~~g~~t~S 36 (311) .+++|....++++...++...+.-.++|++.+. T Consensus 134 p~~~rg~~~g~~~~~~~~G~~~GP~iGg~l~~~ 166 (406) T PRK09874 134 PRNKSGWALGTLSTGGVSGALLGPLAGGLLADH 166 (406) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 775699999999999998888887679999997 No 61 >PRK11357 frlA putative fructoselysine transporter; Provisional Probab=30.62 E-value=34 Score=13.88 Aligned_cols=11 Identities=18% Similarity=0.117 Sum_probs=4.6 Q ss_pred HHHHHHHHHHH Q ss_conf 79999896889 Q gi|254780343|r 79 EYIAAVVEGLL 89 (311) Q Consensus 79 E~l~~l~~~~~ 89 (311) -+..++..+.. T Consensus 85 g~~~gf~~gW~ 95 (445) T PRK11357 85 SRPLAFLSGWA 95 (445) T ss_pred CHHHHHHHHHH T ss_conf 72899999999 No 62 >cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains. Probab=30.50 E-value=34 Score=13.87 Aligned_cols=60 Identities=15% Similarity=0.176 Sum_probs=36.3 Q ss_pred CHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 51458999998641588831151576475579079999999887999899999999999999987 Q gi|254780343|r 212 KPEHLEKIKNIIALNASGSIGIHDLKIRQAGATFFINFHLVVDSHMIVLDAHKICNKLERSLEEN 276 (311) Q Consensus 212 ~~~~~~~i~~~i~~~~~~V~~v~~l~~~~~G~~~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~ 276 (311) .|-.+.++.+.++..--.|.++++-|.+..-+-..+.++++++.. +-+. .+++.+.|+++ T Consensus 8 ~PG~L~~l~~~ia~~gaNI~~i~H~R~~~~~~~~~~~v~i~~Et~-~~eh----~~~i~~~L~~~ 67 (73) T cd04886 8 RPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR-GAEH----IEEIIAALREA 67 (73) T ss_pred CCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEEEECC-CHHH----HHHHHHHHHHC T ss_conf 981799999999986982899999864588988769999999849-9999----99999999986 No 63 >PRK09881 ATP-dependent peptide transporter membrane subunit; Provisional Probab=30.27 E-value=34 Score=13.84 Aligned_cols=50 Identities=16% Similarity=0.227 Sum_probs=25.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH Q ss_conf 9999999999999999999999972799999999999999999999999999548998668724146 Q gi|254780343|r 11 RMALWGIPISAAITALKIIAWYVTGFISLLSDGLESIVNIITAIISYFTLKYAYRPADNTHPFGHQK 77 (311) Q Consensus 11 r~~~~~~~~n~~~~~~k~~~g~~t~S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r 77 (311) +.+.+++.+-+++.+.-+++-+++.-.-. -. ......+||+.+|++|-.. T Consensus 31 ~~a~~g~~il~~~~l~ai~~p~lap~dp~-------~~----------~~~~~l~pPS~~h~lGTD~ 80 (296) T PRK09881 31 PLTVTGAVIIVLMLLMMIFSPWLATHDPN-------AI----------DLTARLLPPSAAHWFGTDE 80 (296) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHH-------HC----------CHHHCCCCCCCCCCCCCCC T ss_conf 89999999999999999999981799943-------21----------8644059998767898897 No 64 >pfam03755 YicC_N YicC-like family, N-terminal region. Family of bacterial proteins. Although poorly characterized, the members of this protein family have been demonstrated to play a role in stationary phase survival. These proteins are not essential during stationary phase. Probab=30.25 E-value=34 Score=13.84 Aligned_cols=44 Identities=14% Similarity=0.386 Sum_probs=24.3 Q ss_pred CCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHC--CCCEEEEEEECCC Q ss_conf 790799999998879998999999999999999877--9868999960588 Q gi|254780343|r 242 GATFFINFHLVVDSHMIVLDAHKICNKLERSLEENI--GQAIITIHIEPAN 290 (311) Q Consensus 242 G~~~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~~--~~~~v~ih~ep~~ 290 (311) =|..+.|+.+-+|+.+.-.|. ++++.+++++ |-.++.|++++.. T Consensus 26 vN~r~LDi~irlP~~l~~~E~-----~ir~~i~~~l~RGkv~~~i~~~~~~ 71 (159) T pfam03755 26 VNHRYLDINLRLPRELRALEP-----KIRELIKKRLSRGKVEVSLRLERAG 71 (159) T ss_pred EECCCEEEEEECCHHHHHHHH-----HHHHHHHHHCCCCEEEEEEEEEECC T ss_conf 035746668745778899899-----9999999765385499999998767 No 65 >pfam02705 K_trans K+ potassium transporter. This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP), yeast (HAK), and plant (AtKT) sequences as members. Probab=30.16 E-value=34 Score=13.83 Aligned_cols=67 Identities=15% Similarity=0.191 Sum_probs=38.8 Q ss_pred HHHHHHHHHHHHHHHHH----------HHHHHHHHH--HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97279999999999999----------999999999--999954899866872414677999989688999988999999 Q gi|254780343|r 33 VTGFISLLSDGLESIVN----------IITAIISYF--TLKYAYRPADNTHPFGHQKAEYIAAVVEGLLMTNIALIILYE 100 (311) Q Consensus 33 ~t~S~allada~~s~~D----------~~~~~~~l~--~~~~s~k~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~i~~e 100 (311) .||+-||.||.-|.-.- .-+.++.++ +.++.+.|.+...|| .+.-|=+.+.-.+++..++..+..+ T Consensus 253 iTGaEALyADlGHFg~~~Ir~aw~~~V~P~L~L~Y~GQ~A~l~~~p~~~~npF--f~~~P~~~~~P~~ilAtlAtIIASQ 330 (731) T pfam02705 253 ITGVEAMFADLGHFSLLAIQLAFTFFVYPCLILAYMGQAAYLSKHPEAYANPF--YRSIPDWLYWPVFIIATLAAIVASQ 330 (731) T ss_pred ECCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCH--HHHCCCHHHHHHHHHHHHHHHHHHH T ss_conf 14288987651466763387889999999999985015888752912205837--8758813688999999999999998 Q ss_pred H Q ss_conf 9 Q gi|254780343|r 101 S 101 (311) Q Consensus 101 s 101 (311) + T Consensus 331 A 331 (731) T pfam02705 331 A 331 (731) T ss_pred H T ss_conf 9 No 66 >pfam04972 BON Putative phospholipid-binding domain. This domain is found in a family of osmotic shock protection proteins. It is also found in some Secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. Probab=29.96 E-value=35 Score=13.81 Aligned_cols=54 Identities=19% Similarity=0.193 Sum_probs=21.2 Q ss_pred HHHHHHHHCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEE Q ss_conf 99998641588831151576475579079999999887999899999999999999987798689 Q gi|254780343|r 218 KIKNIIALNASGSIGIHDLKIRQAGATFFINFHLVVDSHMIVLDAHKICNKLERSLEENIGQAII 282 (311) Q Consensus 218 ~i~~~i~~~~~~V~~v~~l~~~~~G~~~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~~~~~~v 282 (311) +|++.+. ..+...+. ++++.-.+....+.-++ +.. +..+++++..++-.++..+ T Consensus 3 ~i~~~l~-~~~~~~~~-~I~V~v~~g~V~L~G~v--~s~-------~~~~~a~~~a~~~~Gv~~V 56 (64) T pfam04972 3 KVKAALL-ADPGLPAS-DIKVTVENGVVTLSGTV--DSE-------EEKEKAEEIARNVKGVKKV 56 (64) T ss_pred HHHHHHH-CCCCCCCC-CEEEEEECCEEEEEEEC--CCH-------HHHHHHHHHHHCCCCCCEE T ss_conf 8999883-49899857-16999989699999985--999-------9999999999669698589 No 67 >TIGR02380 ECA_wecA undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; InterPro: IPR012750 Members of this family are the WecA enzymes of enterobacterial common antigen (ECA) biosynthesis, undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase. This family represents one narrow clade, and closely related sequences outside this clade may represent enzymes that catalyse the same specific reaction, but in the context of different pathways. A His-rich motif in a cytosolic loop of this integral membrane protein, shown to be critical to enzymatic activity for WecA is variously present or absent in the clade that includes Bacillus subtilis TagO teichoic acid biosynthesis enzyme, which may catalyse the same reaction as WecA. ; GO: 0000287 magnesium ion binding, 0016780 phosphotransferase activity for other substituted phosphate groups, 0030145 manganese ion binding, 0009103 lipopolysaccharide biosynthetic process, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane. Probab=29.60 E-value=28 Score=14.43 Aligned_cols=77 Identities=16% Similarity=0.185 Sum_probs=40.9 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH Q ss_conf 68724146779999896889999889999999999863002232210267888872012467999998741033057787 Q gi|254780343|r 70 THPFGHQKAEYIAAVVEGLLMTNIALIILYESWHNMSHSPSNDFSIMGLFIGFMANIISLFWGKWLIYSGEKNHSAAFKA 149 (311) Q Consensus 70 ~~pyG~~r~E~l~~l~~~~~l~~~~~~i~~es~~~l~~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~~~s~~l~a 149 (311) .+|+|+. .+.+=+=.-|.++-+.-++++.|+.|.=-+|+- .+..++|+..+-+.=+.. ...|+=+|-+|| -++ T Consensus 201 GiplGrk-~KVFMGDAGS~~IGFTViWLLl~~tQg~~~p~~--~PVTALWlIA~PLmDM~a---Im~RR~rkG~SP-FkP 273 (349) T TIGR02380 201 GIPLGRK-FKVFMGDAGSTLIGFTVIWLLLEATQGESSPSM--RPVTALWLIALPLMDMAA---IMLRRIRKGDSP-FKP 273 (349) T ss_pred CCCCCCC-CCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCC--CCHHHHHHHHHHHHHHHH---HHHHHHHCCCCC-CCC T ss_conf 6634688-603115600157889999998720013665788--740579998614777999---999874277776-977 Q ss_pred HHHH Q ss_conf 5998 Q gi|254780343|r 150 NGQH 153 (311) Q Consensus 150 ~~~~ 153 (311) |-.| T Consensus 274 DR~H 277 (349) T TIGR02380 274 DREH 277 (349) T ss_pred CHHH T ss_conf 7356 No 68 >PRK08676 hydrogenase membrane subunit; Validated Probab=29.51 E-value=35 Score=13.76 Aligned_cols=15 Identities=27% Similarity=0.406 Sum_probs=5.6 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 599866537887888 Q gi|254780343|r 150 NGQHFVADVVMSAGV 164 (311) Q Consensus 150 ~~~~~~~D~~~s~~v 164 (311) .-.|..+.++.+.+. T Consensus 326 al~~~i~H~l~k~~L 340 (486) T PRK08676 326 ALFHMLAHSLVKAGL 340 (486) T ss_pred HHHHHHHHHHHHHHH T ss_conf 999999999999999 No 69 >TIGR00827 EIIC-GAT PTS system, galactitol-specific IIC component; InterPro: IPR013853 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The only characterised member of this family of PTS transporters is the Escherichia coli galactitol transporter. Gat family PTS systems typically have 3 components: IIA, IIB and IIC. This family is specific for the IIC component of the PTS Gat family. It contains fewer proteins than IPR004703 from INTERPRO.. Probab=27.38 E-value=39 Score=13.53 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=17.1 Q ss_pred HHHHHHHHHHHHCCCCEEEEEEECC Q ss_conf 9999999999877986899996058 Q gi|254780343|r 265 ICNKLERSLEENIGQAIITIHIEPA 289 (311) Q Consensus 265 i~~~ie~~l~~~~~~~~v~ih~ep~ 289 (311) ++|+.|+.++++|+..|+.|=.||+ T Consensus 266 is~~AR~~lqk~FggrE~~IGLD~A 290 (407) T TIGR00827 266 ISESAREFLQKKFGGREVYIGLDAA 290 (407) T ss_pred CHHHHHHHHHHHHCCEEEEEECCHH T ss_conf 0278899997552880588713345 No 70 >MTH00076 COX2 cytochrome c oxidase subunit II; Provisional Probab=26.46 E-value=40 Score=13.42 Aligned_cols=31 Identities=26% Similarity=0.384 Sum_probs=20.0 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8668724146779999896889999889999 Q gi|254780343|r 68 DNTHPFGHQKAEYIAAVVEGLLMTNIALIIL 98 (311) Q Consensus 68 d~~~pyG~~r~E~l~~l~~~~~l~~~~~~i~ 98 (311) ..+.+....++|.++..+-.++++++++..+ T Consensus 51 ~~~~~~~~~~LEi~WTiiP~iIl~~ia~pS~ 81 (228) T MTH00076 51 TNTNAMDAQEIEMVWTIMPAIILIVIALPSL 81 (228) T ss_pred CCCCCCCCCEEEHHHHHHHHHHHHHHHHHHH T ss_conf 7787878955302489999999999999999 No 71 >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase; InterPro: IPR011880 Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA) . Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in Gram-positive prokaryotes . In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions .. Probab=26.07 E-value=41 Score=13.38 Aligned_cols=109 Identities=11% Similarity=0.181 Sum_probs=75.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---------------------------HHHHHHHHHHHHHCCCCCC Q ss_conf 6876689999999999899999989974044555---------------------------1458999998641588831 Q gi|254780343|r 179 LDSIIACFMACNILYQGCKVISSSIKNLMDAAVK---------------------------PEHLEKIKNIIALNASGSI 231 (311) Q Consensus 179 ~D~i~ai~i~~~i~~~~~~~~~~~~~~Ll~~s~~---------------------------~~~~~~i~~~i~~~~~~V~ 231 (311) .|.=-+-++---+-+.+++++|--.+.|.--.|. .....+|++.| .+.+... T Consensus 269 pDGe~GeLvfttLtkeAlPViRYrTrDltrLlp~~~~taRtmrRM~~i~GRsDDmlIiRGVNvFPtq~E~~i-l~~~~~~ 347 (431) T TIGR02155 269 PDGEEGELVFTTLTKEALPVIRYRTRDLTRLLPEQNGTARTMRRMDRITGRSDDMLIIRGVNVFPTQIEEVI-LKMDELS 347 (431) T ss_pred CCCCCCEEEEEECCCCCCCEEEECHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHH-HCCCCCC T ss_conf 888743065410000167554310102656265778888630344114665142677746356867899999-7077878 Q ss_pred EEEEEEEEEECCEEEEEEEEEECCC---------CCHHHHHHHHHHHHHHHHHHCCCC-EEEEEEECC Q ss_conf 1515764755790799999998879---------998999999999999999877986-899996058 Q gi|254780343|r 232 GIHDLKIRQAGATFFINFHLVVDSH---------MIVLDAHKICNKLERSLEENIGQA-IITIHIEPA 289 (311) Q Consensus 232 ~v~~l~~~~~G~~~~v~~~i~v~~~---------~~~~eah~i~~~ie~~l~~~~~~~-~v~ih~ep~ 289 (311) -=+.+++.+.|.-=-++++|++.++ ++-.+...+++++++.|+...++. +|.+ .+|. T Consensus 348 phY~l~l~r~G~lD~lt~~vE~~~E~~~~~~~gdl~h~~~~~l~~~i~~~iK~~~gvs~~v~~-~~Pg 414 (431) T TIGR02155 348 PHYQLELTREGHLDELTLKVELKPESAALRLHGDLNHEQKSLLAKEIQHQIKAEVGVSVDVHL-VEPG 414 (431) T ss_pred CCEEEEEECCCCCCEEEEEEEECHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEE-ECCC T ss_conf 736899840555523545554122466302355434268999999999986555022216898-2586 No 72 >PRK10417 nikC nickel transporter permease NikC; Provisional Probab=25.87 E-value=41 Score=13.35 Aligned_cols=15 Identities=20% Similarity=0.293 Sum_probs=11.7 Q ss_pred HCCCCCCCCCCCHHH Q ss_conf 548998668724146 Q gi|254780343|r 63 AYRPADNTHPFGHQK 77 (311) Q Consensus 63 s~k~~d~~~pyG~~r 77 (311) ..+||+.+||+|-.+ T Consensus 39 ~~~pPs~~h~lGTD~ 53 (272) T PRK10417 39 RLLSPDAQHWLGTDH 53 (272) T ss_pred CCCCCCCCCCCCCCC T ss_conf 249999666897899 No 73 >pfam04359 DUF493 Protein of unknown function (DUF493). Probab=25.45 E-value=42 Score=13.31 Aligned_cols=61 Identities=13% Similarity=0.186 Sum_probs=35.1 Q ss_pred HCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEEEE--EEEEEECCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 04455514589999986415888311515764755790799--99999887999899999999999999987 Q gi|254780343|r 207 MDAAVKPEHLEKIKNIIALNASGSIGIHDLKIRQAGATFFI--NFHLVVDSHMIVLDAHKICNKLERSLEEN 276 (311) Q Consensus 207 l~~s~~~~~~~~i~~~i~~~~~~V~~v~~l~~~~~G~~~~v--~~~i~v~~~~~~~eah~i~~~ie~~l~~~ 276 (311) ||.+ .++..+.|.+++..+.|++.+ .++..+.+....|+ ++.+.+... ++ .+++=+.|++. T Consensus 21 iG~~-~~~f~~~V~~iv~~h~~~~~~-~~v~~r~Ss~GkY~Svtv~i~a~s~---~q----l~~iy~~L~~~ 83 (90) T pfam04359 21 MGLA-GDELVDAVVEVVQRHAPGFDD-YTPTVKPSSKGKYVSVSVTITATSE---EQ----LEALYQELSAI 83 (90) T ss_pred EECC-CHHHHHHHHHHHHHHCCCCCC-CCEEEEECCCCCEEEEEEEEEECCH---HH----HHHHHHHHHCC T ss_conf 9708-716899999999997799983-3237864689848999999998899---99----99999998319 No 74 >PRK11027 hypothetical protein; Provisional Probab=25.04 E-value=26 Score=14.66 Aligned_cols=14 Identities=21% Similarity=0.403 Sum_probs=11.2 Q ss_pred CCCCCCCCHHHHHH Q ss_conf 98668724146779 Q gi|254780343|r 67 ADNTHPFGHQKAEY 80 (311) Q Consensus 67 ~d~~~pyG~~r~E~ 80 (311) .|++||+|+.|--. T Consensus 13 DdknfPrGF~RsGd 26 (110) T PRK11027 13 DDKNFPRGFSRSGD 26 (110) T ss_pred CCCCCCCCCCCCCC T ss_conf 56778876441687 No 75 >PRK10642 proline/glycine betaine transporter; Provisional Probab=25.02 E-value=42 Score=13.25 Aligned_cols=30 Identities=13% Similarity=0.233 Sum_probs=17.2 Q ss_pred HHHHHHHHH-HHHHCCCCCHHHHHHHHHHHH Q ss_conf 899999989-974044555145899999864 Q gi|254780343|r 195 GCKVISSSI-KNLMDAAVKPEHLEKIKNIIA 224 (311) Q Consensus 195 ~~~~~~~~~-~~Ll~~s~~~~~~~~i~~~i~ 224 (311) +...++|+. +.|-|..|.-++.++.++.++ T Consensus 425 a~~~~~ET~~~pL~g~~~~~~~~~~~~~~~~ 455 (490) T PRK10642 425 TGVTMKETANRPLKGATPAASDIQEAKEILV 455 (490) T ss_pred HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHH T ss_conf 9995642489999999998899899999987 No 76 >PTZ00046 rifin; Provisional Probab=24.81 E-value=43 Score=13.23 Aligned_cols=26 Identities=15% Similarity=0.156 Sum_probs=14.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 46876689999999999899999989 Q gi|254780343|r 178 VLDSIIACFMACNILYQGCKVISSSI 203 (311) Q Consensus 178 ~~D~i~ai~i~~~i~~~~~~~~~~~~ 203 (311) ..-++.+|++-++++..=|-++|--. T Consensus 307 IiaSiiAIvVIVLIMvIIYLILRYRR 332 (348) T PTZ00046 307 IIASIVAIVVIVLIMVIIYLILRYRR 332 (348) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999998732 No 77 >TIGR00368 TIGR00368 Mg chelatase homolog; InterPro: IPR004482 This family of bacterial proteins are variously described as 'hypothetical protein yifB', 'competence protein', 'hypothetical protein' or 'Mg chelatase-related protein'. These proteins are a subset of the magnesium chelatase, ChlI subunit family and either belong to or show significant homology to the non-peptidase homologs of the MEROPS peptidase family S16 (lon protease family, clan SF), IPR001984 from INTERPRO. . Probab=24.49 E-value=43 Score=13.19 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=19.8 Q ss_pred CCCCHHHHHHHHHHHHHHHHH---HCCCCEEEEEEECCCCC Q ss_conf 799989999999999999998---77986899996058876 Q gi|254780343|r 255 SHMIVLDAHKICNKLERSLEE---NIGQAIITIHIEPANEV 292 (311) Q Consensus 255 ~~~~~~eah~i~~~ie~~l~~---~~~~~~v~ih~ep~~~~ 292 (311) |+.+++|+ +|||+.+|++ +||..+++|-.=|++-+ T Consensus 33 p~~~vkEs---reRVksAl~Ns~F~fP~~rI~iNLAPAdl~ 70 (505) T TIGR00368 33 PETTVKES---RERVKSALKNSGFKFPAKRITINLAPADLP 70 (505) T ss_pred CCCCHHHH---HHHHHHHHHHCCCCCCCCEEEEECCCCCCC T ss_conf 86310566---789999986157668854016653888876 No 78 >pfam06183 DinI DinI-like family. This family of short proteins includes DNA-damage-inducible protein I (DinI) and related proteins. The SOS response, a set of cellular phenomena exhibited by eubacteria, is initiated by various causes that include DNA damage-induced replication arrest, and is positively regulated by the co- protease activity of RecA. Escherichia coli DinI, a LexA-regulated SOS gene product, shuts off the initiation of the SOS response when overexpressed in vivo. Biochemical and genetic studies indicated that DinI physically interacts with RecA to inhibit its co-protease activity. The structure of DinI is known. Probab=24.43 E-value=44 Score=13.19 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=11.3 Q ss_pred HHHHHHHHHHHCCCCCCEEEEEEEEEECC Q ss_conf 58999998641588831151576475579 Q gi|254780343|r 215 HLEKIKNIIALNASGSIGIHDLKIRQAGA 243 (311) Q Consensus 215 ~~~~i~~~i~~~~~~V~~v~~l~~~~~G~ 243 (311) ..+++.+.+....|.. +++++..++ T Consensus 9 l~~EL~kRl~~~fPd~----~V~Vr~~s~ 33 (65) T pfam06183 9 LQNELTKRIQSLYPDT----VVSVRKGSA 33 (65) T ss_pred HHHHHHHHHHHHCCCC----EEEEEECCC T ss_conf 9999999865338995----798710567 No 79 >pfam11654 DUF2665 Protein of unknown function (DUF2665). Some members in this family are annotated as Non classical export proteins, however no specific function is known. Probab=24.24 E-value=44 Score=13.16 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=13.5 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 246876689999999999 Q gi|254780343|r 177 TVLDSIIACFMACNILYQ 194 (311) Q Consensus 177 ~~~D~i~ai~i~~~i~~~ 194 (311) .++||+.++.++.+-.+. T Consensus 5 r~~DP~~ai~iG~~sYyl 22 (47) T pfam11654 5 RTLDPILAISIGVASYYL 22 (47) T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 100148999998889988 No 80 >pfam04219 DUF413 Protein of unknown function, DUF. Probab=24.23 E-value=28 Score=14.38 Aligned_cols=14 Identities=21% Similarity=0.403 Sum_probs=11.1 Q ss_pred CCCCCCCCHHHHHH Q ss_conf 98668724146779 Q gi|254780343|r 67 ADNTHPFGHQKAEY 80 (311) Q Consensus 67 ~d~~~pyG~~r~E~ 80 (311) .|++||+|+.|--. T Consensus 4 D~~nfPrGF~RsGd 17 (94) T pfam04219 4 DDKNFPRGFSRSGD 17 (94) T ss_pred CCCCCCCCCCCCCC T ss_conf 67878886452787 No 81 >COG0390 ABC-type uncharacterized transport system, permease component [General function prediction only] Probab=24.20 E-value=44 Score=13.16 Aligned_cols=18 Identities=11% Similarity=-0.116 Sum_probs=6.7 Q ss_pred CHHHHHHHHHHHHHHHHH Q ss_conf 057787599866537887 Q gi|254780343|r 144 SAAFKANGQHFVADVVMS 161 (311) Q Consensus 144 s~~l~a~~~~~~~D~~~s 161 (311) |+.....++....+...| T Consensus 86 ~k~~~~~f~~~flai~~s 103 (256) T COG0390 86 SKKILKLFILVFLAIFVS 103 (256) T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 365212588999999898 No 82 >PRK12704 phosphodiesterase; Provisional Probab=23.98 E-value=44 Score=13.13 Aligned_cols=64 Identities=25% Similarity=0.323 Sum_probs=35.7 Q ss_pred HHHHHHHHHHCCCCCCEEEEEEEEEECCEEEEEEEEEECCC-CCHHHHHHHHHHHHHHHHHH--CCC-CEEEEEEE Q ss_conf 89999986415888311515764755790799999998879-99899999999999999987--798-68999960 Q gi|254780343|r 216 LEKIKNIIALNASGSIGIHDLKIRQAGATFFINFHLVVDSH-MIVLDAHKICNKLERSLEEN--IGQ-AIITIHIE 287 (311) Q Consensus 216 ~~~i~~~i~~~~~~V~~v~~l~~~~~G~~~~v~~~i~v~~~-~~~~eah~i~~~ie~~l~~~--~~~-~~v~ih~e 287 (311) ++++++ ++..++||...+-+ +.|..+ .|.|+|+ .+=.+++.++.++.+.|++. ||. ..|||==| T Consensus 380 l~~lE~-ia~~~~gV~~~yai---qaGREv----RV~V~p~~v~D~~~~~la~~Ia~~Ie~e~~yPG~IkvtviRe 447 (455) T PRK12704 380 LEKLEE-IAESFEGVEKAYAI---QAGREI----RVIVKPDLVDDLQAVLLARDIAKKIEEELQYPGQIKVTVIRE 447 (455) T ss_pred HHHHHH-HHHCCCCHHHHHHH---HCCCEE----EEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEE T ss_conf 999999-98359857888877---439769----999786767848899999999999997383997379999864 No 83 >TIGR01478 STEVOR variant surface antigen, stevor family; InterPro: IPR006374 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see . This entry represents the stevor (short for "subtelomeric variable open reading frame") family of predicted variant surface antigens. This is the third largest variant surface antigen family in P. falciparum, with 33 genes identified in the genome of this parasite . The function of these proteins is not known, but they are expressed during several stages of the parasite life-cycle and may play a variety of roles in parasite survival and infection .. Probab=23.92 E-value=45 Score=13.12 Aligned_cols=100 Identities=15% Similarity=0.107 Sum_probs=44.3 Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH-HHH-H Q ss_conf 999999999999999-9972799999999999999999999999999548998668724146779999896889-999-8 Q gi|254780343|r 17 IPISAAITALKIIAW-YVTGFISLLSDGLESIVNIITAIISYFTLKYAYRPADNTHPFGHQKAEYIAAVVEGLL-MTN-I 93 (311) Q Consensus 17 ~~~n~~~~~~k~~~g-~~t~S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~~~-l~~-~ 93 (311) ++.+++++.++..|- ..+||.+..+. ..+...++.+=.++.. -+| .+.+.|.. +.. + T Consensus 197 ll~~~Gi~aA~tAA~e~~~g~~s~~i~--~~~~~~l~g~nff~~~----------------SlE--sa~~t~~~t~~~lm 256 (315) T TIGR01478 197 LLGLIGIAAAKTAAIEAIIGSYSLDIA--NKCTKALAGINFFFLS----------------SLE--SALKTAVGTIVSLM 256 (315) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH----------------HHH--HHHHHHHHHHHHHH T ss_conf 998888999879998888763015788--8999999999999788----------------999--99987345775365 Q ss_pred HHHHHHH----HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 8999999----99998630022322102678888720124679999987410 Q gi|254780343|r 94 ALIILYE----SWHNMSHSPSNDFSIMGLFIGFMANIISLFWGKWLIYSGEK 141 (311) Q Consensus 94 ~~~i~~e----s~~~l~~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~ 141 (311) |.+--.+ +...+|.| =+++++|.++-.++-..++.|++|+.|+ T Consensus 257 ga~~~~~~~a~~~~Stf~P-----yGIAAlVLi~L~V~LIiLYIWLYrRRK~ 303 (315) T TIGR01478 257 GAADEAESAASAATSTFLP-----YGIAALVLIILTVVLIILYIWLYRRRKK 303 (315) T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHCCH T ss_conf 3246665578888878613-----5899999999999999998888564030 No 84 >pfam07444 Ycf66_N Ycf66 protein N-terminus. This family represents the N-terminus (approximately 80 residues) of Ycf66, a protein that seems to be restricted to eukaryotes that contain chloroplasts and to cyanobacteria. Probab=23.55 E-value=45 Score=13.08 Aligned_cols=43 Identities=23% Similarity=0.439 Sum_probs=21.3 Q ss_pred HHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHHH---HHHHHHHHHHH Q ss_conf 86653788-78888877653027722468766899---99999999899 Q gi|254780343|r 153 HFVADVVM-SAGVLCGLLLVLITEYTVLDSIIACF---MACNILYQGCK 197 (311) Q Consensus 153 ~~~~D~~~-s~~vii~~~~~~~~~~~~~D~i~ai~---i~~~i~~~~~~ 197 (311) |.-.|.+- ++|.+.|.++. +-|| -+||+.-+. .+...+.-+|. T Consensus 33 sRd~D~ffs~vGLl~g~IL~-fqgw-RLdPillfgQ~l~~~~~~~f~~e 79 (84) T pfam07444 33 SRDYDIFFASIGLLCGGILI-FQGW-RLDPILLFGQVLLTGTAIFFAWE 79 (84) T ss_pred CCCCCHHHHHHHHHHHHHHH-HHCC-CCCHHHHHHHHHHHHHHHHHHHH T ss_conf 23410799999999999999-8340-01749999999999999999986 No 85 >TIGR01477 RIFIN variant surface antigen, rifin family; InterPro: IPR006373 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see . This entry represents the rifin family of variant surface antigens, encoded by the rif (short for "repetetive interspersed family") genes. This is the largest variant surface antigen family in P. falciparum, with roughly 150 genes present in the genome of this parasite . The function of these proteins is not yet known, but rifins are strongly immunogenic and high levels of anti-rifin antibodies are correlated with rapid parasite clearance and asymptomatic infections . . Probab=23.47 E-value=16 Score=15.87 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=15.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 246876689999999999899999 Q gi|254780343|r 177 TVLDSIIACFMACNILYQGCKVIS 200 (311) Q Consensus 177 ~~~D~i~ai~i~~~i~~~~~~~~~ 200 (311) +.+=+++||+|=++|+..=|-++| T Consensus 353 ~IiaSiiAIliIVLIMvIIYLILR 376 (395) T TIGR01477 353 AIIASIIAILIIVLIMVIIYLILR 376 (395) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 899989999999999999999875 No 86 >pfam01076 Mob_Pre Plasmid recombination enzyme. With some plasmids, recombination can occur in a site specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre. Pre is a plasmid recombination enzyme. This protein is also known as Mob (conjugative mobilisation). Probab=23.24 E-value=46 Score=13.04 Aligned_cols=63 Identities=17% Similarity=0.251 Sum_probs=45.1 Q ss_pred CEEEEEEEEEECC----CCCHHHHHHHHHHHHHHHHHHCCC---CEEEEEEECCCCCCCCCCCCCCHHHH Q ss_conf 9079999999887----999899999999999999987798---68999960588764555488831456 Q gi|254780343|r 243 ATFFINFHLVVDS----HMIVLDAHKICNKLERSLEENIGQ---AIITIHIEPANEVTHGIHVPLKENKN 305 (311) Q Consensus 243 ~~~~v~~~i~v~~----~~~~~eah~i~~~ie~~l~~~~~~---~~v~ih~ep~~~~~~~~~~~~~e~~~ 305 (311) ....++.-|..+| .++-++..+-.++.-+-+.++||. .-.++|.|-..+.-|..-+|..++.. T Consensus 77 aV~~~e~iit~spe~f~~~~~e~~~~~~~~~~~~l~~~~G~~nv~~a~~H~DE~tPH~H~~~vP~~~~~r 146 (196) T pfam01076 77 AVLANEILITASPDFFKNLTYEEQKEFFETAFKFFEERYGKENILYAVVHLDEATPHMHMGVVPLTEDGR 146 (196) T ss_pred CEEEEEEEEECCHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHEEEEEEECCCCCCCEEEEEEEECCCCC T ss_conf 6899999994798998238999999999999999998658112899998547899833799998647764 No 87 >TIGR00794 kup potassium uptake protein; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) , yeast (HAK) , and plant (AtKT) sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0006813 potassium ion transport, 0016020 membrane. Probab=22.70 E-value=47 Score=12.97 Aligned_cols=68 Identities=21% Similarity=0.183 Sum_probs=44.5 Q ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHHH--HHHHCCCCCCCCCCCHHHHHH----HHHHHHHHHHHHHHH Q ss_conf 99727999999999999999----------99999999--999548998668724146779----999896889999889 Q gi|254780343|r 32 YVTGFISLLSDGLESIVNII----------TAIISYFT--LKYAYRPADNTHPFGHQKAEY----IAAVVEGLLMTNIAL 95 (311) Q Consensus 32 ~~t~S~allada~~s~~D~~----------~~~~~l~~--~~~s~k~~d~~~pyG~~r~E~----l~~l~~~~~l~~~~~ 95 (311) -+||--||+||--|--.-.+ +.+++++| .++++-|.+-+.|| .+.=| =+.+...+++..++. T Consensus 267 SiTGvEamFADlGHF~~~~IqL~~~~~vyP~L~L~Y~GQaAyl~KhPea~~NpF--f~~iPGGln~~~~wP~fi~A~LAa 344 (814) T TIGR00794 267 SITGVEAMFADLGHFGKLAIQLAFTLFVYPSLILAYIGQAAYLSKHPEAIKNPF--FKAIPGGLNEWVLWPLFIIAILAA 344 (814) T ss_pred EECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH--HHHCCCCCCCCHHHHHHHHHHHHH T ss_conf 202235777543121150677899999999999987414677523840003761--250777777743999999999999 Q ss_pred HHHHHH Q ss_conf 999999 Q gi|254780343|r 96 IILYES 101 (311) Q Consensus 96 ~i~~es 101 (311) .+..|| T Consensus 345 iiASQA 350 (814) T TIGR00794 345 IIASQA 350 (814) T ss_pred HHHHHH T ss_conf 999999 No 88 >TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein; InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane. Probab=22.69 E-value=47 Score=12.97 Aligned_cols=100 Identities=10% Similarity=0.043 Sum_probs=47.3 Q ss_pred HHHHHHHHHHHHHHCCC---CCCCCCCCHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH-------HHHHHCCCC- Q ss_conf 99999999999995489---9866872414677999989688999988-----9999999999-------863002232- Q gi|254780343|r 50 IITAIISYFTLKYAYRP---ADNTHPFGHQKAEYIAAVVEGLLMTNIA-----LIILYESWHN-------MSHSPSNDF- 113 (311) Q Consensus 50 ~~~~~~~l~~~~~s~k~---~d~~~pyG~~r~E~l~~l~~~~~l~~~~-----~~i~~es~~~-------l~~~~~~~~- 113 (311) ..+.++.+++..++.+. .|++..-..++ .++..++.+++.+ ++..|-++-+ +++-+.-.. T Consensus 132 ~lAl~liiiGv~lts~~GqL~~~~~~~~~e~----~N~~Kg~~lLl~sGiF~~GY~~Y~~~a~PmHEAA~~~~vd~~~~~ 207 (336) T TIGR00776 132 LLALILIIIGVYLTSISGQLKDKSAKIKSEE----FNLKKGILLLLVSGIFTIGYLVYVVVAKPMHEAAAALGVDGLSVL 207 (336) T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHH T ss_conf 9999999999999730212114553211253----542578999999878999999998606626788888245545668 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 2102678888720124679999987410330577875998665 Q gi|254780343|r 114 SIMGLFIGFMANIISLFWGKWLIYSGEKNHSAAFKANGQHFVA 156 (311) Q Consensus 114 ~~~~~~i~~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~ 156 (311) .+..+.+.+.+.+++.. ...+|. .|-++..++||+-+... T Consensus 208 LPq~iGm~iGg~i~~~~--~~~~RL-Akv~~Ls~kADFs~~k~ 247 (336) T TIGR00776 208 LPQAIGMVIGGIIFNLK--HCFKRL-AKVKDLSLKADFSLAKP 247 (336) T ss_pred HHHHHHHHHHHHHHHHH--HHHHHH-HHHHHHHHCCCHHHHHH T ss_conf 43488887778998756--668877-76653121011122015 No 89 >COG3548 Predicted integral membrane protein [Function unknown] Probab=22.06 E-value=48 Score=12.89 Aligned_cols=80 Identities=14% Similarity=0.148 Sum_probs=39.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH---HHHHHHHHHHHHHHHH Q ss_conf 9999999999972799999999999999999999999999548998668724146779999---8968899998899999 Q gi|254780343|r 23 ITALKIIAWYVTGFISLLSDGLESIVNIITAIISYFTLKYAYRPADNTHPFGHQKAEYIAA---VVEGLLMTNIALIILY 99 (311) Q Consensus 23 ~~~~k~~~g~~t~S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r~E~l~~---l~~~~~l~~~~~~i~~ 99 (311) +++.|+-.---.|+..-+++-..++.--+-+++.+...|...+ .=++++|.+.. ..+-+.++.+++.=+. T Consensus 29 ImVLEi~vP~~~~~~~~~~~l~~~l~~Y~lSF~~v~~~W~n~h-------~~f~~ikki~~~i~~~N~i~L~~vsLlPfs 101 (197) T COG3548 29 IMVLEIKVPKGGGRLQALAELLSSLIIYALSFLVVAIFWFNHH-------RIFGRIKKITGRIIWINFIWLLLVSLLPFS 101 (197) T ss_pred HHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHCCCCHHHHHHHHHHHHHHHHHH T ss_conf 9982002799886377899888999999999999999999999-------999999953611116889999999999877 Q ss_pred HHHHHHHHHH Q ss_conf 9999986300 Q gi|254780343|r 100 ESWHNMSHSP 109 (311) Q Consensus 100 es~~~l~~~~ 109 (311) ..+....+++ T Consensus 102 T~~~~~~~~~ 111 (197) T COG3548 102 TAWIGEIHTD 111 (197) T ss_pred HHHHHCCCCC T ss_conf 9987033687 No 90 >pfam11381 DUF3185 Protein of unknown function (DUF3185). Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known. Probab=21.29 E-value=50 Score=12.79 Aligned_cols=47 Identities=19% Similarity=0.181 Sum_probs=25.8 Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH Q ss_conf 9989688999988999---9999999863002232210267888872012 Q gi|254780343|r 82 AAVVEGLLMTNIALII---LYESWHNMSHSPSNDFSIMGLFIGFMANIIS 128 (311) Q Consensus 82 ~~l~~~~~l~~~~~~i---~~es~~~l~~~~~~~~~~~~~~i~~~~~~v~ 128 (311) +-++.|+.++..+... +-+.+.|.+.+.+.+...+.++-+.++.++. T Consensus 6 ~Llv~GivLl~~Gy~~~~S~~sq~~r~~TG~~td~t~~~ligG~va~ivG 55 (59) T pfam11381 6 ALLVLGIVLLYFGYQASDSLGSQATRAFTGSPTDKTMWYLIGGVVAVIVG 55 (59) T ss_pred EHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHH T ss_conf 46986599998621010367788999971999336588876256878622 No 91 >PRK00907 hypothetical protein; Provisional Probab=21.29 E-value=50 Score=12.79 Aligned_cols=63 Identities=5% Similarity=0.133 Sum_probs=40.5 Q ss_pred HCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 0445551458999998641588831151576475579079999999887999899999999999999987 Q gi|254780343|r 207 MDAAVKPEHLEKIKNIIALNASGSIGIHDLKIRQAGATFFINFHLVVDSHMIVLDAHKICNKLERSLEEN 276 (311) Q Consensus 207 l~~s~~~~~~~~i~~~i~~~~~~V~~v~~l~~~~~G~~~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~ 276 (311) ||. +.+...+.|.++++.+.|.+. -.++..+.+....|+++.+.+... +-++.+ .+-+.|... T Consensus 23 MG~-a~~~~~~~i~~iv~~~~~~~~-~~~i~~r~SS~GkYisvTi~i~At-SReQlD----~iYraL~~H 85 (92) T PRK00907 23 MGT-AERGLETELPRLLAATGVELV-QERISWKHSSSGKYVSVRIGFRAE-SREQYD----AAHQALRDH 85 (92) T ss_pred HCC-CCCCHHHHHHHHHHHHCCCCC-HHHEEECCCCCCEEEEEEEEEEEC-CHHHHH----HHHHHHHCC T ss_conf 476-860089999999999577548-525676447898279999999978-899999----999987259 No 92 >PRK13021 secF preprotein translocase subunit SecF; Reviewed Probab=21.09 E-value=51 Score=12.77 Aligned_cols=56 Identities=16% Similarity=0.080 Sum_probs=29.5 Q ss_pred HHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 378878888877653027722-46876689999999999899999989974044555 Q gi|254780343|r 157 DVVMSAGVLCGLLLVLITEYT-VLDSIIACFMACNILYQGCKVISSSIKNLMDAAVK 212 (311) Q Consensus 157 D~~~s~~vii~~~~~~~~~~~-~~D~i~ai~i~~~i~~~~~~~~~~~~~~Ll~~s~~ 212 (311) ...+|+.++++.+..+++|-. .-|-..+++++..+---.---.-.....+++.+++ T Consensus 230 ti~Ts~Ttll~~~~l~~~Gg~~l~~Fa~~l~iGii~GtySSIfiAspl~~~l~~~~~ 286 (297) T PRK13021 230 TMVTSGTTLMTVGALWIMGGGPLEGFSIAMFIGILTGTFSSISVGTSLPELLGLSPE 286 (297) T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH T ss_conf 999989999999999995456789899999998876445299999999999699999 No 93 >TIGR02876 spore_yqfD sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown .. Probab=20.99 E-value=51 Score=12.75 Aligned_cols=34 Identities=15% Similarity=0.142 Sum_probs=18.8 Q ss_pred HHH-HHHHHHHHHHCCCCCCEEEEEEEEEECCEEEEEE Q ss_conf 145-8999998641588831151576475579079999 Q gi|254780343|r 213 PEH-LEKIKNIIALNASGSIGIHDLKIRQAGATFFINF 249 (311) Q Consensus 213 ~~~-~~~i~~~i~~~~~~V~~v~~l~~~~~G~~~~v~~ 249 (311) ..+ .+++++.+..+ +-++--..++--|..+++.+ T Consensus 140 ~~Ds~~~~~~~L~~~---~~ei~Wv~v~~~Gt~l~~kv 174 (406) T TIGR02876 140 SIDSVYKLERKLLDR---VPEIMWVGVRVRGTKLVIKV 174 (406) T ss_pred CCCCHHHHHHHHHHC---CCCEEEEEEEEECCEEEEEE T ss_conf 688988999999845---99489999998530999999 No 94 >cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Probab=20.72 E-value=52 Score=12.72 Aligned_cols=61 Identities=15% Similarity=0.282 Sum_probs=41.4 Q ss_pred CHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEEEEEEEEEECCCC-CHHHHHHHHHHHHHHHHHH Q ss_conf 5145899999864158883115157647557907999999988799-9899999999999999987 Q gi|254780343|r 212 KPEHLEKIKNIIALNASGSIGIHDLKIRQAGATFFINFHLVVDSHM-IVLDAHKICNKLERSLEEN 276 (311) Q Consensus 212 ~~~~~~~i~~~i~~~~~~V~~v~~l~~~~~G~~~~v~~~i~v~~~~-~~~eah~i~~~ie~~l~~~ 276 (311) .|....++-..+... -.+|++-|+.+.+++..+|.-.+.|++- .+.+. +-.+++++.|++. T Consensus 11 r~gLf~~i~~~l~~~---~l~I~~A~I~t~~~g~~~D~F~V~d~~g~~i~~~-~~~~~i~~~L~~~ 72 (73) T cd04900 11 RPGLFARIAGALDQL---GLNILDARIFTTRDGYALDTFVVLDPDGEPIGER-ERLARIREALEDA 72 (73) T ss_pred CCCHHHHHHHHHHHC---CCEEEEEEEEECCCCEEEEEEEEECCCCCCCCCH-HHHHHHHHHHHHH T ss_conf 787899999999988---9859999999858986999999988999979999-9999999999955 Done!