Query gi|254780343|ref|YP_003064756.1| probable cation efflux protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 311 No_of_seqs 153 out of 2479 Neff 8.0 Searched_HMMs 33803 Date Wed Jun 1 12:15:36 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780343.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3h90_A Ferrous-iron efflux pu 100.0 5.6E-39 1.7E-43 265.7 8.3 200 10-210 3-202 (202) 2 >3byp_A CZRB protein; membrane 99.7 6.6E-17 2E-21 125.8 11.9 91 205-295 1-92 (94) 3 >2zzt_A Putative uncharacteriz 99.7 1.1E-15 3.1E-20 118.1 10.9 93 205-299 2-95 (107) 4 >3h90_A Ferrous-iron efflux pu 99.6 2.3E-15 6.9E-20 115.9 11.8 80 211-291 1-80 (81) 5 >3h90_A Ferrous-iron efflux pu 96.9 0.0039 1.1E-07 38.5 7.0 93 122-214 7-106 (202) 6 >3ixz_A Potassium-transporting 69.5 6.6 0.0002 18.0 10.5 63 118-182 45-112 (124) 7 >1r89_A TRNA nucleotidyltransf 68.1 7.1 0.00021 17.8 4.4 94 211-305 2-116 (127) 8 >2j8s_A ACRB, acriflavine resi 67.9 7.1 0.00021 17.8 8.4 36 246-281 106-141 (208) 9 >1ib8_A Conserved protein SP14 63.4 8.7 0.00026 17.2 6.8 62 214-275 9-70 (91) 10 >1ghh_A DINI, DNA-damage-induc 61.1 9.6 0.00028 17.0 5.4 42 248-289 4-45 (81) 11 >2v50_A Multidrug resistance p 59.5 10 0.0003 16.8 7.0 36 246-281 106-141 (208) 12 >2jp3_A FXYD domain-containing 56.6 11 0.00034 16.5 4.5 38 66-104 5-42 (67) 13 >2zxe_A Na, K-ATPase alpha sub 53.5 13 0.00038 16.2 5.7 17 121-137 55-71 (154) 14 >2wvr_C DNA replication factor 49.3 4.1 0.00012 19.3 0.0 50 215-276 494-543 (546) 15 >2zxe_G FXYD10, phospholemman- 47.2 16 0.00047 15.5 4.0 36 65-101 6-41 (74) 16 >2jo1_A Phospholemman; FXYD1, 41.0 20 0.00059 14.9 3.8 36 68-104 6-41 (72) 17 >3hb3_B Cytochrome C oxidase s 26.2 35 0.001 13.4 3.3 64 35-98 51-126 (136) 18 >2nyi_A Unknown protein; prote 26.1 35 0.001 13.4 4.8 85 211-311 18-107 (111) 19 >2r4f_A 3-hydroxy-3-methylglut 24.6 37 0.0011 13.2 10.1 74 212-287 24-97 (105) 20 >2aal_A Malonate semialdehyde 23.4 39 0.0012 13.1 5.1 41 248-288 67-109 (131) No 1 >>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A (A:1-202) Probab=100.00 E-value=5.6e-39 Score=265.73 Aligned_cols=200 Identities=25% Similarity=0.443 Sum_probs=192.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999972799999999999999999999999999548998668724146779999896889 Q gi|254780343|r 10 IRMALWGIPISAAITALKIIAWYVTGFISLLSDGLESIVNIITAIISYFTLKYAYRPADNTHPFGHQKAEYIAAVVEGLL 89 (311) Q Consensus 10 ~r~~~~~~~~n~~~~~~k~~~g~~t~S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~~~ 89 (311) .|..+++++.|+++++.|+++|++|||.++++|++||+.|+++.++++++.+.++||||++|||||+|.|++++++.+++ T Consensus 3 ~r~~~i~l~~~~~~~v~~~~~g~~t~S~allada~~sl~d~~~~~~~l~~~~~~~k~~~~~~pyG~~r~E~l~~~~~~~~ 82 (202) T 3h90_A 3 SRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESLAALAQSMF 82 (202) T ss_dssp CTHHHHHHHHHHTTHHHHHHSSCSSSSSCCCSTTTHHHHHHHHHHHHHHHHHHHTCCCCSSCSSCSTTHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 78999999999999999999999980899999999999999999999999998279998889960666407988778998 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99988999999999986300223221026788887201246799999874103305778759986653788788888776 Q gi|254780343|r 90 MTNIALIILYESWHNMSHSPSNDFSIMGLFIGFMANIISLFWGKWLIYSGEKNHSAAFKANGQHFVADVVMSAGVLCGLL 169 (311) Q Consensus 90 l~~~~~~i~~es~~~l~~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vii~~~ 169 (311) +++.++++++++++++++|++++...+.+...+++..++...+++..+.+++.+|++++++.+|+++|+++|++++++.+ T Consensus 83 l~~~~~~~~~~ai~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~d~l~s~~vii~~l 162 (202) T 3h90_A 83 ISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLALG 162 (202) T ss_dssp HHHHHHHHHHHHHHTSSSSCCCCCCCCCTHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCCSCSCSSSC T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHH T ss_conf 99999999999999984357666776542002333234799999987630345776676423454133212338899999 Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 53027722468766899999999998999999899740445 Q gi|254780343|r 170 LVLITEYTVLDSIIACFMACNILYQGCKVISSSIKNLMDAA 210 (311) Q Consensus 170 ~~~~~~~~~~D~i~ai~i~~~i~~~~~~~~~~~~~~Ll~~s 210 (311) +.++ +|+|+||++++++++++++.+++++|++.+.|+|++ T Consensus 163 ~~~~-~~~~~D~i~~iii~~~i~~~~~~~~~~s~~~Ll~~a 202 (202) T 3h90_A 163 LSWY-GWHRADALFALGIGIYILYSALRMGYEAVQSLLDRA 202 (202) T ss_dssp SCST-TSCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC T ss_pred HHHH-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 9994-816675898999999999999999999977653677 No 2 >>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} (A:) Probab=99.73 E-value=6.6e-17 Score=125.78 Aligned_cols=91 Identities=37% Similarity=0.658 Sum_probs=84.4 Q ss_pred HHHCCCCCHHHHHHHHHHHHH-CCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEE Q ss_conf 740445551458999998641-5888311515764755790799999998879998999999999999999877986899 Q gi|254780343|r 205 NLMDAAVKPEHLEKIKNIIAL-NASGSIGIHDLKIRQAGATFFINFHLVVDSHMIVLDAHKICNKLERSLEENIGQAIIT 283 (311) Q Consensus 205 ~Ll~~s~~~~~~~~i~~~i~~-~~~~V~~v~~l~~~~~G~~~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~~~~~~v~ 283 (311) .|||.+|+++..++|++.+.. ..|+|.++|++|+|++|+++++++|+++++++|+.++|++.+++|+.|+++|++.+++ T Consensus 1 gLld~~~~~~~~~~i~~~i~~~~~~~V~~vh~lr~r~~G~~~~v~~hi~v~~~~~v~eah~i~~~ie~~l~~~~~i~~v~ 80 (94) T 3byp_A 1 GLMDEGLPPEEVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPGLQAT 80 (94) T ss_dssp -----CCCHHHHHHHHHHHHHHHTTTCSEEEEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHSTTEEEE T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEE T ss_conf 98888889999999999999568988668888888998997999999998999999999999999999999778986799 Q ss_pred EEEECCCCCCCC Q ss_conf 996058876455 Q gi|254780343|r 284 IHIEPANEVTHG 295 (311) Q Consensus 284 ih~ep~~~~~~~ 295 (311) ||+||+++.++. T Consensus 81 ih~ep~~~~~~~ 92 (94) T 3byp_A 81 IHVEPEGERKRT 92 (94) T ss_dssp EEEEECC----- T ss_pred EEECCCCCCCCC T ss_conf 998989951247 No 3 >>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima} (A:) Probab=99.66 E-value=1.1e-15 Score=118.15 Aligned_cols=93 Identities=22% Similarity=0.325 Sum_probs=82.7 Q ss_pred HHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCC-CCEEE Q ss_conf 74044555145899999864158883115157647557907999999988799989999999999999998779-86899 Q gi|254780343|r 205 NLMDAAVKPEHLEKIKNIIALNASGSIGIHDLKIRQAGATFFINFHLVVDSHMIVLDAHKICNKLERSLEENIG-QAIIT 283 (311) Q Consensus 205 ~Ll~~s~~~~~~~~i~~~i~~~~~~V~~v~~l~~~~~G~~~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~~~-~~~v~ 283 (311) .|+ .++|++..++|++.+ +..|||.++|++|+|++|+++++++|++|++++|+.++|++++++|+.|+++|| +.+++ T Consensus 2 ~L~-~a~~~~~~~~I~~~i-~~~~~V~~vh~lr~r~~G~~~~v~~hi~v~~~~tv~eah~i~~~ie~~i~~~~~~i~~v~ 79 (107) T 2zzt_A 2 DGX-KRTELDXYDDIFAVL-ERFPNVHNPHRVRIRRVGTKYFIEXDIEVDGKXSVKDAHELTVKIRKEXLKRRDDIEDVT 79 (107) T ss_dssp --C-CHHHHHHHHHHHHHH-TTCSSCEEEEEEEEECSCC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCTTCCEEE T ss_pred CCC-CCCCHHHHHHHHHHH-HCCCCEEEECCCEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEE T ss_conf 897-633999999999999-739996754570347888959999999989999899999999999999998789975699 Q ss_pred EEEECCCCCCCCCCCC Q ss_conf 9960588764555488 Q gi|254780343|r 284 IHIEPANEVTHGIHVP 299 (311) Q Consensus 284 ih~ep~~~~~~~~~~~ 299 (311) ||+||+.+.......+ T Consensus 80 I~~ep~~~~~~~~~~~ 95 (107) T 2zzt_A 80 IHVEPLGNVEEEGFGL 95 (107) T ss_dssp EEEEETTC-------- T ss_pred EEECCCCCCCCCCCCC T ss_conf 9968788887675677 No 4 >>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A (A:203-283) Probab=99.65 E-value=2.3e-15 Score=115.94 Aligned_cols=80 Identities=28% Similarity=0.514 Sum_probs=76.3 Q ss_pred CCHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCC Q ss_conf 55145899999864158883115157647557907999999988799989999999999999998779868999960588 Q gi|254780343|r 211 VKPEHLEKIKNIIALNASGSIGIHDLKIRQAGATFFINFHLVVDSHMIVLDAHKICNKLERSLEENIGQAIITIHIEPAN 290 (311) Q Consensus 211 ~~~~~~~~i~~~i~~~~~~V~~v~~l~~~~~G~~~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~~~~~~v~ih~ep~~ 290 (311) .|++..+++++.+ +..|||.++|++|+|++|+++++++|+++|+++|+.++|++.+++|+.|++++|+.++|||+||++ T Consensus 1 v~~e~~~~i~~~i-~~~~gV~~vh~l~~r~~G~~~~v~~hi~v~~~~sv~eah~i~~~ie~~l~~~~~i~~v~ih~eP~~ 79 (81) T 3h90_A 1 LPDEERQEIIDIV-TSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPGSDVIIHQDPCS 79 (81) T ss_dssp CCHHHHHHHHHHH-HHSSSCSEEEEEEEEEETTEEEEEEEEECCTTCBHHHHHHHHHHHHHHHHHHSTTCEEEEEEECSC T ss_pred CCHHHHHHHHHHH-HCCCCCCCEEEEEEEEECCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC T ss_conf 8677799999999-759862313479999958979999999989999899999999999999998779986999947850 Q ss_pred C Q ss_conf 7 Q gi|254780343|r 291 E 291 (311) Q Consensus 291 ~ 291 (311) . T Consensus 80 ~ 80 (81) T 3h90_A 80 V 80 (81) T ss_dssp C T ss_pred C T ss_conf 5 No 5 >>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A (A:1-202) Probab=96.90 E-value=0.0039 Score=38.46 Aligned_cols=93 Identities=14% Similarity=-0.011 Sum_probs=76.0 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHHHHH Q ss_conf 887201246799999874103305778759986653788788888776530-------2772246876689999999999 Q gi|254780343|r 122 FMANIISLFWGKWLIYSGEKNHSAAFKANGQHFVADVVMSAGVLCGLLLVL-------ITEYTVLDSIIACFMACNILYQ 194 (311) Q Consensus 122 ~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vii~~~~~~-------~~~~~~~D~i~ai~i~~~i~~~ 194 (311) ..+..++..++....-.+--.+|.++.+|+.|...|+..++..+.+.-... -.|+.-..++++++.+.+++.. T Consensus 7 ~i~l~~~~~~~v~~~~~g~~t~S~allada~~sl~d~~~~~~~l~~~~~~~k~~~~~~pyG~~r~E~l~~~~~~~~l~~~ 86 (202) T 3h90_A 7 IAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESLAALAQSMFISGS 86 (202) T ss_dssp HHHHHHHHTTHHHHHHSSCSSSSSCCCSTTTHHHHHHHHHHHHHHHHHHHTCCCCSSCSSCSTTHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999808999999999999999999999999982799988899606664079887789989999 Q ss_pred HHHHHHHHHHHHHCCCCCHH Q ss_conf 89999998997404455514 Q gi|254780343|r 195 GCKVISSSIKNLMDAAVKPE 214 (311) Q Consensus 195 ~~~~~~~~~~~Ll~~s~~~~ 214 (311) +..+..++...++...+++. T Consensus 87 ~~~~~~~ai~~~~~~~~~~~ 106 (202) T 3h90_A 87 ALFLFLTGIQHLISPTPMTD 106 (202) T ss_dssp HHHHHHHHHHTSSSSCCCCC T ss_pred HHHHHHHHHHHHHCCCCCCC T ss_conf 99999999999843576667 No 6 >>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 1iwc_A 1iwf_A (A:99-168,A:290-343) Probab=69.48 E-value=6.6 Score=17.96 Aligned_cols=63 Identities=11% Similarity=0.230 Sum_probs=31.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCCCCHHHHHH Q ss_conf 6788887201246799999874103--3057787599866537887888887765---302772246876 Q gi|254780343|r 118 LFIGFMANIISLFWGKWLIYSGEKN--HSAAFKANGQHFVADVVMSAGVLCGLLL---VLITEYTVLDSI 182 (311) Q Consensus 118 ~~i~~~~~~v~~~~~~~~~~~~~~~--~s~~l~a~~~~~~~D~~~s~~vii~~~~---~~~~~~~~~D~i 182 (311) ..+..+..++|.....++-++++|. ++|.-+ ..+.+...++.++..++..+ ..+.|.++.|.+ T Consensus 45 ~ivI~~iv~in~~igf~QE~kAeka~~~TPLq~--~l~~~~~~l~~~a~~~~~~~f~~~~~~g~~~~~~~ 112 (124) T 3ixz_A 45 ALALIAVVVVTGCFGYYQEFKSTNIIEKTPIAI--EIEHFVDIIAGLAILFGATFFIVAMCIGYTFLRAM 112 (124) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH T ss_conf 999999999999999999999999995787899--99999999999999999998763331353178999 No 7 >>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransferase superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} (A:15-141) Probab=68.14 E-value=7.1 Score=17.79 Aligned_cols=94 Identities=5% Similarity=0.056 Sum_probs=54.9 Q ss_pred CCHHHHHHHHHHHHHCCCCCCEEEEEEEEEE---------CCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCC- Q ss_conf 5514589999986415888311515764755---------790799999998879998999999999999999877986- Q gi|254780343|r 211 VKPEHLEKIKNIIALNASGSIGIHDLKIRQA---------GATFFINFHLVVDSHMIVLDAHKICNKLERSLEENIGQA- 280 (311) Q Consensus 211 ~~~~~~~~i~~~i~~~~~~V~~v~~l~~~~~---------G~~~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~~~~~- 280 (311) |+++..+++++... ......+-++.++... .+..-+|+-+.++.+.+-++......++.+.+.+++... T Consensus 2 Ps~~~~~~~~~~~~-~l~~~l~~~~~~~~~~GSyargT~i~~~sDiDi~v~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (127) T 1r89_A 2 PDEEEVRKGREAEE-ELRRRLDELGVEYVFVGSYARNTWLKGSLEIDVFLLFPEEFSKEELRERGLEIGKAVLDSYEIRY 80 (127) T ss_dssp CCHHHHHHHHHHHH-HHHHHHHHHTCCEEEEHHHHHTCCCTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHSSSEEEEE T ss_pred CCHHHHHHHHHHHH-HHHHHHHHHCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 89999999999999-99999986098299989686899899974389999838999899999999999985456566323 Q ss_pred --E--EEEEEE-------CCCCCCCCCCCCCCHHHH Q ss_conf --8--999960-------588764555488831456 Q gi|254780343|r 281 --I--ITIHIE-------PANEVTHGIHVPLKENKN 305 (311) Q Consensus 281 --~--v~ih~e-------p~~~~~~~~~~~~~e~~~ 305 (311) + +++.++ ||...........--+++ T Consensus 81 ~~~~~V~v~~~~~~vDiVPa~~~~dg~~~~s~~drt 116 (127) T 1r89_A 81 AEHPYVHGVVKGVEVDVVPCYKLKEPKNIKSAVDRT 116 (127) T ss_dssp SSSEEEEEEETTEEEEEEEEECCSSSSCCCSHHHHH T ss_pred CCCCEEEEEECCEEEEEEEEEEECCCCCCCCHHHCC T ss_conf 156589999834688876566402752445453326 No 8 >>2j8s_A ACRB, acriflavine resistance protein B; membrane protein/complex, designed ankyrin repeat protein, multidrug resistance protein; HET: LMT LMU; 2.54A {Escherichia coli} PDB: 2dhh_A 1iwg_A 2dr6_A* 2drd_A* 2hqf_A 2hqg_A 2hqd_A 2hqc_A 2i6w_A 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 1t9x_A* 1t9t_A* 1t9v_A* ... (A:135-181,A:275-329,A:568-673) Probab=67.91 E-value=7.1 Score=17.76 Aligned_cols=36 Identities=6% Similarity=0.004 Sum_probs=15.9 Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCE Q ss_conf 999999988799989999999999999998779868 Q gi|254780343|r 246 FINFHLVVDSHMIVLDAHKICNKLERSLEENIGQAI 281 (311) Q Consensus 246 ~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~~~~~~ 281 (311) .+.+.+..|+..++++.+++.+++|+.+++..++.+ T Consensus 106 ~i~v~v~~P~Gtsle~T~~~~~~ie~~l~~~~~v~~ 141 (208) T 2j8s_A 106 VFMTMVQLPAGATQERTQKVLNEVTHYYLTKEKNNV 141 (208) T ss_dssp EEEEEEECCTTCCHHHHHHHHHHHHHHHHHTTTTTE T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE T ss_conf 777775543301399999999999998740268860 No 9 >>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} (A:1-91) Probab=63.36 E-value=8.7 Score=17.21 Aligned_cols=62 Identities=8% Similarity=0.237 Sum_probs=46.3 Q ss_pred HHHHHHHHHHHHCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHH Q ss_conf 45899999864158883115157647557907999999988799989999999999999998 Q gi|254780343|r 214 EHLEKIKNIIALNASGSIGIHDLKIRQAGATFFINFHLVVDSHMIVLDAHKICNKLERSLEE 275 (311) Q Consensus 214 ~~~~~i~~~i~~~~~~V~~v~~l~~~~~G~~~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~ 275 (311) ...++|++.++.-.+.-..+.++.....|....+.+.|.-+...++.+...+..++...|-. T Consensus 9 ~~~~~i~~l~~~v~~~g~eL~~v~~~~~~~~~~l~V~iD~~~gi~iddc~~~Sr~i~~~LD~ 70 (91) T 1ib8_A 9 TIVELVREVVEPVIEAPFELVDIEYGKIGSDMILSIFVDKPEGITLNDTADLTEMISPVLDT 70 (91) T ss_dssp HHHHHHHHHHHHHHCSSSEEEEEEEEEETTEEEEEEEEECSSCCCHHHHHHHHHHHGGGTTT T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHC T ss_conf 99999999999998579889999998289971999999999996789999999999877604 No 10 >>1ghh_A DINI, DNA-damage-inducible protein I; bicelle, dipolar coupling, liquid crystal, PF1, RECA, protein binding; NMR {Escherichia coli} (A:) Probab=61.11 E-value=9.6 Score=16.95 Aligned_cols=42 Identities=10% Similarity=0.090 Sum_probs=25.6 Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECC Q ss_conf 999998879998999999999999999877986899996058 Q gi|254780343|r 248 NFHLVVDSHMIVLDAHKICNKLERSLEENIGQAIITIHIEPA 289 (311) Q Consensus 248 ~~~i~v~~~~~~~eah~i~~~ie~~l~~~~~~~~v~ih~ep~ 289 (311) ++.+.=...++-.-.+.+..+++++|.++||..++.|.+-|. T Consensus 4 Ei~~dK~~~lp~ga~~aL~~EL~kRi~~~yPd~~~~v~Vr~~ 45 (81) T 1ghh_A 4 EVTIAKTSPLPAGAIDALAGELSRRIQYAFPDNEGHVSVRYA 45 (81) T ss_dssp EEEEETTSCCCTTHHHHHHHHHHHHHHHHCSSSCCEEEEEEE T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEC T ss_conf 887603577860069999999999998768886443555223 No 11 >>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01} (A:135-180,A:275-329,A:567-673) Probab=59.45 E-value=10 Score=16.77 Aligned_cols=36 Identities=6% Similarity=0.058 Sum_probs=18.5 Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCE Q ss_conf 999999988799989999999999999998779868 Q gi|254780343|r 246 FINFHLVVDSHMIVLDAHKICNKLERSLEENIGQAI 281 (311) Q Consensus 246 ~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~~~~~~ 281 (311) .+.+++.+|+..++++..++.+++|+.+++..++.. T Consensus 106 ~~~v~v~lP~Gssl~~T~~~~~~ie~~l~~~p~v~~ 141 (208) T 2v50_A 106 VLFAQVQTPPGSSAERTQVVVDSMREYLLEKESSSV 141 (208) T ss_dssp EEEEEEECSTTCCHHHHHHHHHHHHHHHHHHTTTTE T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 652233076323455789999999999876237664 No 12 >>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus} (A:) Probab=56.58 E-value=11 Score=16.47 Aligned_cols=38 Identities=5% Similarity=0.124 Sum_probs=28.7 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 998668724146779999896889999889999999999 Q gi|254780343|r 66 PADNTHPFGHQKAEYIAAVVEGLLMTNIALIILYESWHN 104 (311) Q Consensus 66 ~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~i~~es~~~ 104 (311) ..+..|.|-|..+. +++|+.+.+++.+|+.++...=.+ T Consensus 5 ~e~dpF~YDy~tLR-igGLi~a~vLfi~GI~iilS~kcr 42 (67) T 2jp3_A 5 DKGSPFYYDWESLQ-LGGLIFGGLLCIAGIALALSGKCK 42 (67) T ss_dssp STTSGGGGGGHHHH-HHHHHHHHHHHHHHHHHHHTTHHH T ss_pred CCCCCCCCCHHHHH-CCCHHHHHHHHHHHHHHHHCCCCC T ss_conf 56898614438863-000499999999999999847533 No 13 >>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 1mo7_A 1mo8_A* 1q3i_A (A:87-170,A:269-338) Probab=53.50 E-value=13 Score=16.15 Aligned_cols=17 Identities=6% Similarity=-0.134 Sum_probs=7.1 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 88872012467999998 Q gi|254780343|r 121 GFMANIISLFWGKWLIY 137 (311) Q Consensus 121 ~~~~~~v~~~~~~~~~~ 137 (311) .++..+++.....+.-+ T Consensus 55 I~~iv~in~~i~f~qE~ 71 (154) T 2zxe_A 55 LSTVVIVTGCFSYYQEA 71 (154) T ss_dssp HHHHHHHHHHHHHHHTC T ss_pred HHHHHHHHHHHHHHHHH T ss_conf 78999999999999999 No 14 >>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* (C:) Probab=49.32 E-value=4.1 Score=19.29 Aligned_cols=50 Identities=12% Similarity=0.201 Sum_probs=25.2 Q ss_pred HHHHHHHHHHHCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 58999998641588831151576475579079999999887999899999999999999987 Q gi|254780343|r 215 HLEKIKNIIALNASGSIGIHDLKIRQAGATFFINFHLVVDSHMIVLDAHKICNKLERSLEEN 276 (311) Q Consensus 215 ~~~~i~~~i~~~~~~V~~v~~l~~~~~G~~~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~ 276 (311) +.++..+.++.-.++++.++.+ +...+ +.++.+.+++ +|+++++++++++ T Consensus 494 e~~~~l~~l~~~~p~~~~~~~~-----~~~~~----~~~~~~~~~~---~~~~~~~~~~~~~ 543 (546) T 2wvr_C 494 EMEKHLLLLSELLPDWLSLHRI-----RTDTY----VKLDKAADLA---HITARLAHQTRAE 543 (546) T ss_dssp -------------------------------------------------------------- T ss_pred HHHHHHHHHHHHCCCCEEEEEE-----CCCEE----EEEECCCCHH---HHHHHHHHHHHHH T ss_conf 9999999999868720699862-----79458----9960217999---9999999997665 No 15 >>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G* (G:) Probab=47.24 E-value=16 Score=15.53 Aligned_cols=36 Identities=14% Similarity=0.280 Sum_probs=27.5 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8998668724146779999896889999889999999 Q gi|254780343|r 65 RPADNTHPFGHQKAEYIAAVVEGLLMTNIALIILYES 101 (311) Q Consensus 65 k~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~i~~es 101 (311) .+.+..|.|-|..+.. ++|+.+.+++.+|+.++... T Consensus 6 ~~e~dpF~YDy~tLRi-gGLi~A~vLfi~GI~iilS~ 41 (74) T 2zxe_G 6 PDNDERFTYDYYRLRV-VGLIVAAVLCVIGIIILLAG 41 (74) T ss_dssp TTCGGGGCCCHHHHHH-HHHHHHHHHHHHHHHHHTTT T ss_pred CCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHCC T ss_conf 7768985144488752-00699999999999999938 No 16 >>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens} (A:) Probab=40.98 E-value=20 Score=14.93 Aligned_cols=36 Identities=8% Similarity=0.193 Sum_probs=27.4 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8668724146779999896889999889999999999 Q gi|254780343|r 68 DNTHPFGHQKAEYIAAVVEGLLMTNIALIILYESWHN 104 (311) Q Consensus 68 d~~~pyG~~r~E~l~~l~~~~~l~~~~~~i~~es~~~ 104 (311) ++.|.|-|..+.. ++|+.+.+++.+|+.++...=.+ T Consensus 6 ~dpF~YDY~tLRi-gGLi~A~vLfi~GI~iilS~kcr 41 (72) T 2jo1_A 6 HDPFTYDYQSLQI-GGLVIAGILFILGILIVLSRRCR 41 (72) T ss_dssp HSGGGCSTHHHHH-HHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCHHHHHC-CCHHHHHHHHHHHHHHHHCCCCC T ss_conf 6986354588750-22378999999999999836565 No 17 >>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B* (B:1-136) Probab=26.16 E-value=35 Score=13.39 Aligned_cols=64 Identities=17% Similarity=0.077 Sum_probs=35.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------HHH--HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 2799999999999999999999999----------999--548998668724146779999896889999889999 Q gi|254780343|r 35 GFISLLSDGLESIVNIITAIISYFT----------LKY--AYRPADNTHPFGHQKAEYIAAVVEGLLMTNIALIIL 98 (311) Q Consensus 35 ~S~allada~~s~~D~~~~~~~l~~----------~~~--s~k~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~i~ 98 (311) .+.+-.++.+..+-|....++..+. ... .++.+..++.-+-..+|.++..+-.+++.+.++-.+ T Consensus 51 d~~Sp~me~i~~fHd~~m~i~~~I~~~V~~~~~~~~~~~~~~~~~~~~~~~~n~~lEiiWTiiP~lILi~la~PSl 126 (136) T 3hb3_B 51 PASSPLAHDQQWLDHFVLYIITAVTIFVCLLLLICIVRFNRRANPVPARFTHNTPIEVIWTLVPVLILVAIGAFSL 126 (136) T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSBTTTSSSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 9889899999999999999999999999999999999982668887532357752678999999999999999887 No 18 >>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} (A:85-195) Probab=26.08 E-value=35 Score=13.38 Aligned_cols=85 Identities=18% Similarity=0.191 Sum_probs=42.3 Q ss_pred CCHHHHHHHHHHHHHCCCCCCEEEEEEEEEEC----CEEEEEEEEEECCC-CCHHHHHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 55145899999864158883115157647557----90799999998879-99899999999999999987798689999 Q gi|254780343|r 211 VKPEHLEKIKNIIALNASGSIGIHDLKIRQAG----ATFFINFHLVVDSH-MIVLDAHKICNKLERSLEENIGQAIITIH 285 (311) Q Consensus 211 ~~~~~~~~i~~~i~~~~~~V~~v~~l~~~~~G----~~~~v~~~i~v~~~-~~~~eah~i~~~ie~~l~~~~~~~~v~ih 285 (311) ..+-...+|.+.++.+. .++.++.....+ ...+..+...+++. .+.. ++.+++++. .++++ +.|+ T Consensus 18 DrpGiva~it~~la~~g---~nI~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~l~~~L~~l-~~~l~---l~i~ 87 (111) T 2nyi_A 18 DSEGIVEAVTAVLAKKG---ANIVELETETLPAPFAGFTLFRXGSRVAFPFPLYQ---EVVTALSRV-EEEFG---VDID 87 (111) T ss_dssp CCTTHHHHHHHHHHHTT---CEEEEEEEEEEECSSTTCEEEEEEEEEEEEGGGHH---HHHHHHHHH-HHHHT---CEEE T ss_pred CCHHHHHHHHHHHHHCC---CEEEEEEEEEECCCCCCCCEEEEEEEEECCCCCHH---HHHHHHHHH-HHHHC---CEEE T ss_conf 98789999999999769---57878777576489888624999999967966279---999999999-99858---5899 Q ss_pred EECCCCCCCCCCCCCCHHHHHHHCCC Q ss_conf 60588764555488831456542059 Q gi|254780343|r 286 IEPANEVTHGIHVPLKENKNQCLKSL 311 (311) Q Consensus 286 ~ep~~~~~~~~~~~~~e~~~~~~~~l 311 (311) +.|.+.. +.-.+..||+.+| T Consensus 88 v~~~~~~------~~vsr~~hcL~~l 107 (111) T 2nyi_A 88 LEEVVEG------EDSEEDDDSPNSP 107 (111) T ss_dssp EEECC--------------------- T ss_pred EEECCCC------CCCCCCCCCCCCC T ss_conf 9887878------8761226898755 No 19 >>2r4f_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; oxidoreductase, cholesterol, biocynthesis, HMG-COA, NADPH, statin, alternative splicing; HET: RIE; 1.70A {Homo sapiens} PDB: 2q1l_A* 2q6c_A* 2q6b_A* 3bgl_A* 3cct_A* 3ccw_A* 3ccz_A* 3cd0_A* 3cd5_A* 3cd7_A* 3cda_A* 3cdb_A* 1dqa_A* 1dq9_A* 1dq8_A* 1hw8_A* 1hw9_A* 1hwi_A* 1hwj_A* 1hwk_A* ... (A:154-258) Probab=24.60 E-value=37 Score=13.21 Aligned_cols=74 Identities=20% Similarity=0.208 Sum_probs=57.8 Q ss_pred CHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEE Q ss_conf 5145899999864158883115157647557907999999988799989999999999999998779868999960 Q gi|254780343|r 212 KPEHLEKIKNIIALNASGSIGIHDLKIRQAGATFFINFHLVVDSHMIVLDAHKICNKLERSLEENIGQAIITIHIE 287 (311) Q Consensus 212 ~~~~~~~i~~~i~~~~~~V~~v~~l~~~~~G~~~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~~~~~~v~ih~e 287 (311) +++..+++++..+ .....-...+++..-.|+..++-..-.-...+-.--.-.-.+++=+.|++++|..++ +-++ T Consensus 24 ~~e~~~~ik~~~~-stSr~~rL~~i~~~i~G~~v~lRF~~~TGDAmGmNMvtkat~~~~~~i~~~~p~~~~-~~ls 97 (105) T 2r4f_A 24 TSEGFAVIKEAFD-STSRFARLQKLHTSIAGRNLYIRFQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQI-LAVS 97 (105) T ss_dssp SHHHHHHHHHHHH-TTCSSCEECCCEEEEETTEEEEEEEEECTTBCCHHHHHHHHHHHHHHHHHHCTTCEE-EESC T ss_pred CHHHHHHHHHHCC-CCCCCCCCEEEEEEECCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE-EEEC T ss_conf 6356899987542-544422440478763076699999972277787679999999999999986887605-6322 No 20 >>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, lyase; 1.65A {Pseudomonas pavonaceae} (A:) Probab=23.37 E-value=39 Score=13.06 Aligned_cols=41 Identities=12% Similarity=0.067 Sum_probs=29.9 Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHCCC--CEEEEEEEC Q ss_conf 99999887999899999999999999987798--689999605 Q gi|254780343|r 248 NFHLVVDSHMIVLDAHKICNKLERSLEENIGQ--AIITIHIEP 288 (311) Q Consensus 248 ~~~i~v~~~~~~~eah~i~~~ie~~l~~~~~~--~~v~ih~ep 288 (311) -+.+..-...+.++-.++..++.+.+.+..++ .++.|.+.- T Consensus 67 ~i~~~~~~~~~~e~k~~l~~~i~~~l~~~~gi~~~~v~v~~~e 109 (131) T 2aal_A 67 VLLTVISRPRSEEQKVCFYKLLTGALERDCGISPDDVIVALVE 109 (131) T ss_dssp EEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEE T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE T ss_conf 9999986899999999999999999999749792709999998 Done!