Query         gi|254780343|ref|YP_003064756.1| probable cation efflux protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 311
No_of_seqs    153 out of 2479
Neff          8.0 
Searched_HMMs 33803
Date          Wed Jun  1 12:15:36 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780343.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >3h90_A Ferrous-iron efflux pu 100.0 5.6E-39 1.7E-43  265.7   8.3  200   10-210     3-202 (202)
  2 >3byp_A CZRB protein; membrane  99.7 6.6E-17   2E-21  125.8  11.9   91  205-295     1-92  (94)
  3 >2zzt_A Putative uncharacteriz  99.7 1.1E-15 3.1E-20  118.1  10.9   93  205-299     2-95  (107)
  4 >3h90_A Ferrous-iron efflux pu  99.6 2.3E-15 6.9E-20  115.9  11.8   80  211-291     1-80  (81)
  5 >3h90_A Ferrous-iron efflux pu  96.9  0.0039 1.1E-07   38.5   7.0   93  122-214     7-106 (202)
  6 >3ixz_A Potassium-transporting  69.5     6.6  0.0002   18.0  10.5   63  118-182    45-112 (124)
  7 >1r89_A TRNA nucleotidyltransf  68.1     7.1 0.00021   17.8   4.4   94  211-305     2-116 (127)
  8 >2j8s_A ACRB, acriflavine resi  67.9     7.1 0.00021   17.8   8.4   36  246-281   106-141 (208)
  9 >1ib8_A Conserved protein SP14  63.4     8.7 0.00026   17.2   6.8   62  214-275     9-70  (91)
 10 >1ghh_A DINI, DNA-damage-induc  61.1     9.6 0.00028   17.0   5.4   42  248-289     4-45  (81)
 11 >2v50_A Multidrug resistance p  59.5      10  0.0003   16.8   7.0   36  246-281   106-141 (208)
 12 >2jp3_A FXYD domain-containing  56.6      11 0.00034   16.5   4.5   38   66-104     5-42  (67)
 13 >2zxe_A Na, K-ATPase alpha sub  53.5      13 0.00038   16.2   5.7   17  121-137    55-71  (154)
 14 >2wvr_C DNA replication factor  49.3     4.1 0.00012   19.3   0.0   50  215-276   494-543 (546)
 15 >2zxe_G FXYD10, phospholemman-  47.2      16 0.00047   15.5   4.0   36   65-101     6-41  (74)
 16 >2jo1_A Phospholemman; FXYD1,   41.0      20 0.00059   14.9   3.8   36   68-104     6-41  (72)
 17 >3hb3_B Cytochrome C oxidase s  26.2      35   0.001   13.4   3.3   64   35-98     51-126 (136)
 18 >2nyi_A Unknown protein; prote  26.1      35   0.001   13.4   4.8   85  211-311    18-107 (111)
 19 >2r4f_A 3-hydroxy-3-methylglut  24.6      37  0.0011   13.2  10.1   74  212-287    24-97  (105)
 20 >2aal_A Malonate semialdehyde   23.4      39  0.0012   13.1   5.1   41  248-288    67-109 (131)

No 1  
>>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A (A:1-202)
Probab=100.00  E-value=5.6e-39  Score=265.73  Aligned_cols=200  Identities=25%  Similarity=0.443  Sum_probs=192.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999972799999999999999999999999999548998668724146779999896889
Q gi|254780343|r   10 IRMALWGIPISAAITALKIIAWYVTGFISLLSDGLESIVNIITAIISYFTLKYAYRPADNTHPFGHQKAEYIAAVVEGLL   89 (311)
Q Consensus        10 ~r~~~~~~~~n~~~~~~k~~~g~~t~S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~~~   89 (311)
                      .|..+++++.|+++++.|+++|++|||.++++|++||+.|+++.++++++.+.++||||++|||||+|.|++++++.+++
T Consensus         3 ~r~~~i~l~~~~~~~v~~~~~g~~t~S~allada~~sl~d~~~~~~~l~~~~~~~k~~~~~~pyG~~r~E~l~~~~~~~~   82 (202)
T 3h90_A            3 SRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESLAALAQSMF   82 (202)
T ss_dssp             CTHHHHHHHHHHTTHHHHHHSSCSSSSSCCCSTTTHHHHHHHHHHHHHHHHHHHTCCCCSSCSSCSTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             78999999999999999999999980899999999999999999999999998279998889960666407988778998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99988999999999986300223221026788887201246799999874103305778759986653788788888776
Q gi|254780343|r   90 MTNIALIILYESWHNMSHSPSNDFSIMGLFIGFMANIISLFWGKWLIYSGEKNHSAAFKANGQHFVADVVMSAGVLCGLL  169 (311)
Q Consensus        90 l~~~~~~i~~es~~~l~~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vii~~~  169 (311)
                      +++.++++++++++++++|++++...+.+...+++..++...+++..+.+++.+|++++++.+|+++|+++|++++++.+
T Consensus        83 l~~~~~~~~~~ai~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~d~l~s~~vii~~l  162 (202)
T 3h90_A           83 ISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLALG  162 (202)
T ss_dssp             HHHHHHHHHHHHHHTSSSSCCCCCCCCCTHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCCSCSCSSSC
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf             99999999999999984357666776542002333234799999987630345776676423454133212338899999


Q ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             53027722468766899999999998999999899740445
Q gi|254780343|r  170 LVLITEYTVLDSIIACFMACNILYQGCKVISSSIKNLMDAA  210 (311)
Q Consensus       170 ~~~~~~~~~~D~i~ai~i~~~i~~~~~~~~~~~~~~Ll~~s  210 (311)
                      +.++ +|+|+||++++++++++++.+++++|++.+.|+|++
T Consensus       163 ~~~~-~~~~~D~i~~iii~~~i~~~~~~~~~~s~~~Ll~~a  202 (202)
T 3h90_A          163 LSWY-GWHRADALFALGIGIYILYSALRMGYEAVQSLLDRA  202 (202)
T ss_dssp             SCST-TSCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHH-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             9994-816675898999999999999999999977653677


No 2  
>>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} (A:)
Probab=99.73  E-value=6.6e-17  Score=125.78  Aligned_cols=91  Identities=37%  Similarity=0.658  Sum_probs=84.4

Q ss_pred             HHHCCCCCHHHHHHHHHHHHH-CCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             740445551458999998641-5888311515764755790799999998879998999999999999999877986899
Q gi|254780343|r  205 NLMDAAVKPEHLEKIKNIIAL-NASGSIGIHDLKIRQAGATFFINFHLVVDSHMIVLDAHKICNKLERSLEENIGQAIIT  283 (311)
Q Consensus       205 ~Ll~~s~~~~~~~~i~~~i~~-~~~~V~~v~~l~~~~~G~~~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~~~~~~v~  283 (311)
                      .|||.+|+++..++|++.+.. ..|+|.++|++|+|++|+++++++|+++++++|+.++|++.+++|+.|+++|++.+++
T Consensus         1 gLld~~~~~~~~~~i~~~i~~~~~~~V~~vh~lr~r~~G~~~~v~~hi~v~~~~~v~eah~i~~~ie~~l~~~~~i~~v~   80 (94)
T 3byp_A            1 GLMDEGLPPEEVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPGLQAT   80 (94)
T ss_dssp             -----CCCHHHHHHHHHHHHHHHTTTCSEEEEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHSTTEEEE
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             98888889999999999999568988668888888998997999999998999999999999999999999778986799


Q ss_pred             EEEECCCCCCCC
Q ss_conf             996058876455
Q gi|254780343|r  284 IHIEPANEVTHG  295 (311)
Q Consensus       284 ih~ep~~~~~~~  295 (311)
                      ||+||+++.++.
T Consensus        81 ih~ep~~~~~~~   92 (94)
T 3byp_A           81 IHVEPEGERKRT   92 (94)
T ss_dssp             EEEEECC-----
T ss_pred             EEECCCCCCCCC
T ss_conf             998989951247


No 3  
>>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima} (A:)
Probab=99.66  E-value=1.1e-15  Score=118.15  Aligned_cols=93  Identities=22%  Similarity=0.325  Sum_probs=82.7

Q ss_pred             HHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCC-CCEEE
Q ss_conf             74044555145899999864158883115157647557907999999988799989999999999999998779-86899
Q gi|254780343|r  205 NLMDAAVKPEHLEKIKNIIALNASGSIGIHDLKIRQAGATFFINFHLVVDSHMIVLDAHKICNKLERSLEENIG-QAIIT  283 (311)
Q Consensus       205 ~Ll~~s~~~~~~~~i~~~i~~~~~~V~~v~~l~~~~~G~~~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~~~-~~~v~  283 (311)
                      .|+ .++|++..++|++.+ +..|||.++|++|+|++|+++++++|++|++++|+.++|++++++|+.|+++|| +.+++
T Consensus         2 ~L~-~a~~~~~~~~I~~~i-~~~~~V~~vh~lr~r~~G~~~~v~~hi~v~~~~tv~eah~i~~~ie~~i~~~~~~i~~v~   79 (107)
T 2zzt_A            2 DGX-KRTELDXYDDIFAVL-ERFPNVHNPHRVRIRRVGTKYFIEXDIEVDGKXSVKDAHELTVKIRKEXLKRRDDIEDVT   79 (107)
T ss_dssp             --C-CHHHHHHHHHHHHHH-TTCSSCEEEEEEEEECSCC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred             CCC-CCCCHHHHHHHHHHH-HCCCCEEEECCCEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf             897-633999999999999-739996754570347888959999999989999899999999999999998789975699


Q ss_pred             EEEECCCCCCCCCCCC
Q ss_conf             9960588764555488
Q gi|254780343|r  284 IHIEPANEVTHGIHVP  299 (311)
Q Consensus       284 ih~ep~~~~~~~~~~~  299 (311)
                      ||+||+.+.......+
T Consensus        80 I~~ep~~~~~~~~~~~   95 (107)
T 2zzt_A           80 IHVEPLGNVEEEGFGL   95 (107)
T ss_dssp             EEEEETTC--------
T ss_pred             EEECCCCCCCCCCCCC
T ss_conf             9968788887675677


No 4  
>>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A (A:203-283)
Probab=99.65  E-value=2.3e-15  Score=115.94  Aligned_cols=80  Identities=28%  Similarity=0.514  Sum_probs=76.3

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf             55145899999864158883115157647557907999999988799989999999999999998779868999960588
Q gi|254780343|r  211 VKPEHLEKIKNIIALNASGSIGIHDLKIRQAGATFFINFHLVVDSHMIVLDAHKICNKLERSLEENIGQAIITIHIEPAN  290 (311)
Q Consensus       211 ~~~~~~~~i~~~i~~~~~~V~~v~~l~~~~~G~~~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~~~~~~v~ih~ep~~  290 (311)
                      .|++..+++++.+ +..|||.++|++|+|++|+++++++|+++|+++|+.++|++.+++|+.|++++|+.++|||+||++
T Consensus         1 v~~e~~~~i~~~i-~~~~gV~~vh~l~~r~~G~~~~v~~hi~v~~~~sv~eah~i~~~ie~~l~~~~~i~~v~ih~eP~~   79 (81)
T 3h90_A            1 LPDEERQEIIDIV-TSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPGSDVIIHQDPCS   79 (81)
T ss_dssp             CCHHHHHHHHHHH-HHSSSCSEEEEEEEEEETTEEEEEEEEECCTTCBHHHHHHHHHHHHHHHHHHSTTCEEEEEEECSC
T ss_pred             CCHHHHHHHHHHH-HCCCCCCCEEEEEEEEECCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             8677799999999-759862313479999958979999999989999899999999999999998779986999947850


Q ss_pred             C
Q ss_conf             7
Q gi|254780343|r  291 E  291 (311)
Q Consensus       291 ~  291 (311)
                      .
T Consensus        80 ~   80 (81)
T 3h90_A           80 V   80 (81)
T ss_dssp             C
T ss_pred             C
T ss_conf             5


No 5  
>>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A (A:1-202)
Probab=96.90  E-value=0.0039  Score=38.46  Aligned_cols=93  Identities=14%  Similarity=-0.011  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             887201246799999874103305778759986653788788888776530-------2772246876689999999999
Q gi|254780343|r  122 FMANIISLFWGKWLIYSGEKNHSAAFKANGQHFVADVVMSAGVLCGLLLVL-------ITEYTVLDSIIACFMACNILYQ  194 (311)
Q Consensus       122 ~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vii~~~~~~-------~~~~~~~D~i~ai~i~~~i~~~  194 (311)
                      ..+..++..++....-.+--.+|.++.+|+.|...|+..++..+.+.-...       -.|+.-..++++++.+.+++..
T Consensus         7 ~i~l~~~~~~~v~~~~~g~~t~S~allada~~sl~d~~~~~~~l~~~~~~~k~~~~~~pyG~~r~E~l~~~~~~~~l~~~   86 (202)
T 3h90_A            7 IAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESLAALAQSMFISGS   86 (202)
T ss_dssp             HHHHHHHHTTHHHHHHSSCSSSSSCCCSTTTHHHHHHHHHHHHHHHHHHHTCCCCSSCSSCSTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999808999999999999999999999999982799988899606664079887789989999


Q ss_pred             HHHHHHHHHHHHHCCCCCHH
Q ss_conf             89999998997404455514
Q gi|254780343|r  195 GCKVISSSIKNLMDAAVKPE  214 (311)
Q Consensus       195 ~~~~~~~~~~~Ll~~s~~~~  214 (311)
                      +..+..++...++...+++.
T Consensus        87 ~~~~~~~ai~~~~~~~~~~~  106 (202)
T 3h90_A           87 ALFLFLTGIQHLISPTPMTD  106 (202)
T ss_dssp             HHHHHHHHHHTSSSSCCCCC
T ss_pred             HHHHHHHHHHHHHCCCCCCC
T ss_conf             99999999999843576667


No 6  
>>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 1iwc_A 1iwf_A (A:99-168,A:290-343)
Probab=69.48  E-value=6.6  Score=17.96  Aligned_cols=63  Identities=11%  Similarity=0.230  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCCCCHHHHHH
Q ss_conf             6788887201246799999874103--3057787599866537887888887765---302772246876
Q gi|254780343|r  118 LFIGFMANIISLFWGKWLIYSGEKN--HSAAFKANGQHFVADVVMSAGVLCGLLL---VLITEYTVLDSI  182 (311)
Q Consensus       118 ~~i~~~~~~v~~~~~~~~~~~~~~~--~s~~l~a~~~~~~~D~~~s~~vii~~~~---~~~~~~~~~D~i  182 (311)
                      ..+..+..++|.....++-++++|.  ++|.-+  ..+.+...++.++..++..+   ..+.|.++.|.+
T Consensus        45 ~ivI~~iv~in~~igf~QE~kAeka~~~TPLq~--~l~~~~~~l~~~a~~~~~~~f~~~~~~g~~~~~~~  112 (124)
T 3ixz_A           45 ALALIAVVVVTGCFGYYQEFKSTNIIEKTPIAI--EIEHFVDIIAGLAILFGATFFIVAMCIGYTFLRAM  112 (124)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             999999999999999999999999995787899--99999999999999999998763331353178999


No 7  
>>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransferase superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} (A:15-141)
Probab=68.14  E-value=7.1  Score=17.79  Aligned_cols=94  Identities=5%  Similarity=0.056  Sum_probs=54.9

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCEEEEEEEEEE---------CCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCC-
Q ss_conf             5514589999986415888311515764755---------790799999998879998999999999999999877986-
Q gi|254780343|r  211 VKPEHLEKIKNIIALNASGSIGIHDLKIRQA---------GATFFINFHLVVDSHMIVLDAHKICNKLERSLEENIGQA-  280 (311)
Q Consensus       211 ~~~~~~~~i~~~i~~~~~~V~~v~~l~~~~~---------G~~~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~~~~~-  280 (311)
                      |+++..+++++... ......+-++.++...         .+..-+|+-+.++.+.+-++......++.+.+.+++... 
T Consensus         2 Ps~~~~~~~~~~~~-~l~~~l~~~~~~~~~~GSyargT~i~~~sDiDi~v~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~   80 (127)
T 1r89_A            2 PDEEEVRKGREAEE-ELRRRLDELGVEYVFVGSYARNTWLKGSLEIDVFLLFPEEFSKEELRERGLEIGKAVLDSYEIRY   80 (127)
T ss_dssp             CCHHHHHHHHHHHH-HHHHHHHHHTCCEEEEHHHHHTCCCTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHSSSEEEEE
T ss_pred             CCHHHHHHHHHHHH-HHHHHHHHHCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             89999999999999-99999986098299989686899899974389999838999899999999999985456566323


Q ss_pred             --E--EEEEEE-------CCCCCCCCCCCCCCHHHH
Q ss_conf             --8--999960-------588764555488831456
Q gi|254780343|r  281 --I--ITIHIE-------PANEVTHGIHVPLKENKN  305 (311)
Q Consensus       281 --~--v~ih~e-------p~~~~~~~~~~~~~e~~~  305 (311)
                        +  +++.++       ||...........--+++
T Consensus        81 ~~~~~V~v~~~~~~vDiVPa~~~~dg~~~~s~~drt  116 (127)
T 1r89_A           81 AEHPYVHGVVKGVEVDVVPCYKLKEPKNIKSAVDRT  116 (127)
T ss_dssp             SSSEEEEEEETTEEEEEEEEECCSSSSCCCSHHHHH
T ss_pred             CCCCEEEEEECCEEEEEEEEEEECCCCCCCCHHHCC
T ss_conf             156589999834688876566402752445453326


No 8  
>>2j8s_A ACRB, acriflavine resistance protein B; membrane protein/complex, designed ankyrin repeat protein, multidrug resistance protein; HET: LMT LMU; 2.54A {Escherichia coli} PDB: 2dhh_A 1iwg_A 2dr6_A* 2drd_A* 2hqf_A 2hqg_A 2hqd_A 2hqc_A 2i6w_A 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 1t9x_A* 1t9t_A* 1t9v_A* ... (A:135-181,A:275-329,A:568-673)
Probab=67.91  E-value=7.1  Score=17.76  Aligned_cols=36  Identities=6%  Similarity=0.004  Sum_probs=15.9

Q ss_pred             EEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf             999999988799989999999999999998779868
Q gi|254780343|r  246 FINFHLVVDSHMIVLDAHKICNKLERSLEENIGQAI  281 (311)
Q Consensus       246 ~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~~~~~~  281 (311)
                      .+.+.+..|+..++++.+++.+++|+.+++..++.+
T Consensus       106 ~i~v~v~~P~Gtsle~T~~~~~~ie~~l~~~~~v~~  141 (208)
T 2j8s_A          106 VFMTMVQLPAGATQERTQKVLNEVTHYYLTKEKNNV  141 (208)
T ss_dssp             EEEEEEECCTTCCHHHHHHHHHHHHHHHHHTTTTTE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
T ss_conf             777775543301399999999999998740268860


No 9  
>>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} (A:1-91)
Probab=63.36  E-value=8.7  Score=17.21  Aligned_cols=62  Identities=8%  Similarity=0.237  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             45899999864158883115157647557907999999988799989999999999999998
Q gi|254780343|r  214 EHLEKIKNIIALNASGSIGIHDLKIRQAGATFFINFHLVVDSHMIVLDAHKICNKLERSLEE  275 (311)
Q Consensus       214 ~~~~~i~~~i~~~~~~V~~v~~l~~~~~G~~~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~  275 (311)
                      ...++|++.++.-.+.-..+.++.....|....+.+.|.-+...++.+...+..++...|-.
T Consensus         9 ~~~~~i~~l~~~v~~~g~eL~~v~~~~~~~~~~l~V~iD~~~gi~iddc~~~Sr~i~~~LD~   70 (91)
T 1ib8_A            9 TIVELVREVVEPVIEAPFELVDIEYGKIGSDMILSIFVDKPEGITLNDTADLTEMISPVLDT   70 (91)
T ss_dssp             HHHHHHHHHHHHHHCSSSEEEEEEEEEETTEEEEEEEEECSSCCCHHHHHHHHHHHGGGTTT
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHC
T ss_conf             99999999999998579889999998289971999999999996789999999999877604


No 10 
>>1ghh_A DINI, DNA-damage-inducible protein I; bicelle, dipolar coupling, liquid crystal, PF1, RECA, protein binding; NMR {Escherichia coli} (A:)
Probab=61.11  E-value=9.6  Score=16.95  Aligned_cols=42  Identities=10%  Similarity=0.090  Sum_probs=25.6

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf             999998879998999999999999999877986899996058
Q gi|254780343|r  248 NFHLVVDSHMIVLDAHKICNKLERSLEENIGQAIITIHIEPA  289 (311)
Q Consensus       248 ~~~i~v~~~~~~~eah~i~~~ie~~l~~~~~~~~v~ih~ep~  289 (311)
                      ++.+.=...++-.-.+.+..+++++|.++||..++.|.+-|.
T Consensus         4 Ei~~dK~~~lp~ga~~aL~~EL~kRi~~~yPd~~~~v~Vr~~   45 (81)
T 1ghh_A            4 EVTIAKTSPLPAGAIDALAGELSRRIQYAFPDNEGHVSVRYA   45 (81)
T ss_dssp             EEEEETTSCCCTTHHHHHHHHHHHHHHHHCSSSCCEEEEEEE
T ss_pred             EEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEC
T ss_conf             887603577860069999999999998768886443555223


No 11 
>>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01} (A:135-180,A:275-329,A:567-673)
Probab=59.45  E-value=10  Score=16.77  Aligned_cols=36  Identities=6%  Similarity=0.058  Sum_probs=18.5

Q ss_pred             EEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf             999999988799989999999999999998779868
Q gi|254780343|r  246 FINFHLVVDSHMIVLDAHKICNKLERSLEENIGQAI  281 (311)
Q Consensus       246 ~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~~~~~~  281 (311)
                      .+.+++.+|+..++++..++.+++|+.+++..++..
T Consensus       106 ~~~v~v~lP~Gssl~~T~~~~~~ie~~l~~~p~v~~  141 (208)
T 2v50_A          106 VLFAQVQTPPGSSAERTQVVVDSMREYLLEKESSSV  141 (208)
T ss_dssp             EEEEEEECSTTCCHHHHHHHHHHHHHHHHHHTTTTE
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             652233076323455789999999999876237664


No 12 
>>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus} (A:)
Probab=56.58  E-value=11  Score=16.47  Aligned_cols=38  Identities=5%  Similarity=0.124  Sum_probs=28.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             998668724146779999896889999889999999999
Q gi|254780343|r   66 PADNTHPFGHQKAEYIAAVVEGLLMTNIALIILYESWHN  104 (311)
Q Consensus        66 ~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~i~~es~~~  104 (311)
                      ..+..|.|-|..+. +++|+.+.+++.+|+.++...=.+
T Consensus         5 ~e~dpF~YDy~tLR-igGLi~a~vLfi~GI~iilS~kcr   42 (67)
T 2jp3_A            5 DKGSPFYYDWESLQ-LGGLIFGGLLCIAGIALALSGKCK   42 (67)
T ss_dssp             STTSGGGGGGHHHH-HHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             CCCCCCCCCHHHHH-CCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf             56898614438863-000499999999999999847533


No 13 
>>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 1mo7_A 1mo8_A* 1q3i_A (A:87-170,A:269-338)
Probab=53.50  E-value=13  Score=16.15  Aligned_cols=17  Identities=6%  Similarity=-0.134  Sum_probs=7.1

Q ss_pred             HHHHHHHHHHHHHHHHH
Q ss_conf             88872012467999998
Q gi|254780343|r  121 GFMANIISLFWGKWLIY  137 (311)
Q Consensus       121 ~~~~~~v~~~~~~~~~~  137 (311)
                      .++..+++.....+.-+
T Consensus        55 I~~iv~in~~i~f~qE~   71 (154)
T 2zxe_A           55 LSTVVIVTGCFSYYQEA   71 (154)
T ss_dssp             HHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHH
T ss_conf             78999999999999999


No 14 
>>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* (C:)
Probab=49.32  E-value=4.1  Score=19.29  Aligned_cols=50  Identities=12%  Similarity=0.201  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             58999998641588831151576475579079999999887999899999999999999987
Q gi|254780343|r  215 HLEKIKNIIALNASGSIGIHDLKIRQAGATFFINFHLVVDSHMIVLDAHKICNKLERSLEEN  276 (311)
Q Consensus       215 ~~~~i~~~i~~~~~~V~~v~~l~~~~~G~~~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~  276 (311)
                      +.++..+.++.-.++++.++.+     +...+    +.++.+.+++   +|+++++++++++
T Consensus       494 e~~~~l~~l~~~~p~~~~~~~~-----~~~~~----~~~~~~~~~~---~~~~~~~~~~~~~  543 (546)
T 2wvr_C          494 EMEKHLLLLSELLPDWLSLHRI-----RTDTY----VKLDKAADLA---HITARLAHQTRAE  543 (546)
T ss_dssp             --------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHCCCCEEEEEE-----CCCEE----EEEECCCCHH---HHHHHHHHHHHHH
T ss_conf             9999999999868720699862-----79458----9960217999---9999999997665


No 15 
>>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G* (G:)
Probab=47.24  E-value=16  Score=15.53  Aligned_cols=36  Identities=14%  Similarity=0.280  Sum_probs=27.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8998668724146779999896889999889999999
Q gi|254780343|r   65 RPADNTHPFGHQKAEYIAAVVEGLLMTNIALIILYES  101 (311)
Q Consensus        65 k~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~i~~es  101 (311)
                      .+.+..|.|-|..+.. ++|+.+.+++.+|+.++...
T Consensus         6 ~~e~dpF~YDy~tLRi-gGLi~A~vLfi~GI~iilS~   41 (74)
T 2zxe_G            6 PDNDERFTYDYYRLRV-VGLIVAAVLCVIGIIILLAG   41 (74)
T ss_dssp             TTCGGGGCCCHHHHHH-HHHHHHHHHHHHHHHHHTTT
T ss_pred             CCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHCC
T ss_conf             7768985144488752-00699999999999999938


No 16 
>>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens} (A:)
Probab=40.98  E-value=20  Score=14.93  Aligned_cols=36  Identities=8%  Similarity=0.193  Sum_probs=27.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8668724146779999896889999889999999999
Q gi|254780343|r   68 DNTHPFGHQKAEYIAAVVEGLLMTNIALIILYESWHN  104 (311)
Q Consensus        68 d~~~pyG~~r~E~l~~l~~~~~l~~~~~~i~~es~~~  104 (311)
                      ++.|.|-|..+.. ++|+.+.+++.+|+.++...=.+
T Consensus         6 ~dpF~YDY~tLRi-gGLi~A~vLfi~GI~iilS~kcr   41 (72)
T 2jo1_A            6 HDPFTYDYQSLQI-GGLVIAGILFILGILIVLSRRCR   41 (72)
T ss_dssp             HSGGGCSTHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHC-CCHHHHHHHHHHHHHHHHCCCCC
T ss_conf             6986354588750-22378999999999999836565


No 17 
>>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B* (B:1-136)
Probab=26.16  E-value=35  Score=13.39  Aligned_cols=64  Identities=17%  Similarity=0.077  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH----------HHH--HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2799999999999999999999999----------999--548998668724146779999896889999889999
Q gi|254780343|r   35 GFISLLSDGLESIVNIITAIISYFT----------LKY--AYRPADNTHPFGHQKAEYIAAVVEGLLMTNIALIIL   98 (311)
Q Consensus        35 ~S~allada~~s~~D~~~~~~~l~~----------~~~--s~k~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~i~   98 (311)
                      .+.+-.++.+..+-|....++..+.          ...  .++.+..++.-+-..+|.++..+-.+++.+.++-.+
T Consensus        51 d~~Sp~me~i~~fHd~~m~i~~~I~~~V~~~~~~~~~~~~~~~~~~~~~~~~n~~lEiiWTiiP~lILi~la~PSl  126 (136)
T 3hb3_B           51 PASSPLAHDQQWLDHFVLYIITAVTIFVCLLLLICIVRFNRRANPVPARFTHNTPIEVIWTLVPVLILVAIGAFSL  126 (136)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSBTTTSSSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9889899999999999999999999999999999999982668887532357752678999999999999999887


No 18 
>>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} (A:85-195)
Probab=26.08  E-value=35  Score=13.38  Aligned_cols=85  Identities=18%  Similarity=0.191  Sum_probs=42.3

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCEEEEEEEEEEC----CEEEEEEEEEECCC-CCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             55145899999864158883115157647557----90799999998879-99899999999999999987798689999
Q gi|254780343|r  211 VKPEHLEKIKNIIALNASGSIGIHDLKIRQAG----ATFFINFHLVVDSH-MIVLDAHKICNKLERSLEENIGQAIITIH  285 (311)
Q Consensus       211 ~~~~~~~~i~~~i~~~~~~V~~v~~l~~~~~G----~~~~v~~~i~v~~~-~~~~eah~i~~~ie~~l~~~~~~~~v~ih  285 (311)
                      ..+-...+|.+.++.+.   .++.++.....+    ...+..+...+++. .+..   ++.+++++. .++++   +.|+
T Consensus        18 DrpGiva~it~~la~~g---~nI~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~l~~~L~~l-~~~l~---l~i~   87 (111)
T 2nyi_A           18 DSEGIVEAVTAVLAKKG---ANIVELETETLPAPFAGFTLFRXGSRVAFPFPLYQ---EVVTALSRV-EEEFG---VDID   87 (111)
T ss_dssp             CCTTHHHHHHHHHHHTT---CEEEEEEEEEEECSSTTCEEEEEEEEEEEEGGGHH---HHHHHHHHH-HHHHT---CEEE
T ss_pred             CCHHHHHHHHHHHHHCC---CEEEEEEEEEECCCCCCCCEEEEEEEEECCCCCHH---HHHHHHHHH-HHHHC---CEEE
T ss_conf             98789999999999769---57878777576489888624999999967966279---999999999-99858---5899


Q ss_pred             EECCCCCCCCCCCCCCHHHHHHHCCC
Q ss_conf             60588764555488831456542059
Q gi|254780343|r  286 IEPANEVTHGIHVPLKENKNQCLKSL  311 (311)
Q Consensus       286 ~ep~~~~~~~~~~~~~e~~~~~~~~l  311 (311)
                      +.|.+..      +.-.+..||+.+|
T Consensus        88 v~~~~~~------~~vsr~~hcL~~l  107 (111)
T 2nyi_A           88 LEEVVEG------EDSEEDDDSPNSP  107 (111)
T ss_dssp             EEECC---------------------
T ss_pred             EEECCCC------CCCCCCCCCCCCC
T ss_conf             9887878------8761226898755


No 19 
>>2r4f_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; oxidoreductase, cholesterol, biocynthesis, HMG-COA, NADPH, statin, alternative splicing; HET: RIE; 1.70A {Homo sapiens} PDB: 2q1l_A* 2q6c_A* 2q6b_A* 3bgl_A* 3cct_A* 3ccw_A* 3ccz_A* 3cd0_A* 3cd5_A* 3cd7_A* 3cda_A* 3cdb_A* 1dqa_A* 1dq9_A* 1dq8_A* 1hw8_A* 1hw9_A* 1hwi_A* 1hwj_A* 1hwk_A* ... (A:154-258)
Probab=24.60  E-value=37  Score=13.21  Aligned_cols=74  Identities=20%  Similarity=0.208  Sum_probs=57.8

Q ss_pred             CHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf             5145899999864158883115157647557907999999988799989999999999999998779868999960
Q gi|254780343|r  212 KPEHLEKIKNIIALNASGSIGIHDLKIRQAGATFFINFHLVVDSHMIVLDAHKICNKLERSLEENIGQAIITIHIE  287 (311)
Q Consensus       212 ~~~~~~~i~~~i~~~~~~V~~v~~l~~~~~G~~~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~~~~~~v~ih~e  287 (311)
                      +++..+++++..+ .....-...+++..-.|+..++-..-.-...+-.--.-.-.+++=+.|++++|..++ +-++
T Consensus        24 ~~e~~~~ik~~~~-stSr~~rL~~i~~~i~G~~v~lRF~~~TGDAmGmNMvtkat~~~~~~i~~~~p~~~~-~~ls   97 (105)
T 2r4f_A           24 TSEGFAVIKEAFD-STSRFARLQKLHTSIAGRNLYIRFQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQI-LAVS   97 (105)
T ss_dssp             SHHHHHHHHHHHH-TTCSSCEECCCEEEEETTEEEEEEEEECTTBCCHHHHHHHHHHHHHHHHHHCTTCEE-EESC
T ss_pred             CHHHHHHHHHHCC-CCCCCCCCEEEEEEECCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE-EEEC
T ss_conf             6356899987542-544422440478763076699999972277787679999999999999986887605-6322


No 20 
>>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, lyase; 1.65A {Pseudomonas pavonaceae} (A:)
Probab=23.37  E-value=39  Score=13.06  Aligned_cols=41  Identities=12%  Similarity=0.067  Sum_probs=29.9

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHHHCCC--CEEEEEEEC
Q ss_conf             99999887999899999999999999987798--689999605
Q gi|254780343|r  248 NFHLVVDSHMIVLDAHKICNKLERSLEENIGQ--AIITIHIEP  288 (311)
Q Consensus       248 ~~~i~v~~~~~~~eah~i~~~ie~~l~~~~~~--~~v~ih~ep  288 (311)
                      -+.+..-...+.++-.++..++.+.+.+..++  .++.|.+.-
T Consensus        67 ~i~~~~~~~~~~e~k~~l~~~i~~~l~~~~gi~~~~v~v~~~e  109 (131)
T 2aal_A           67 VLLTVISRPRSEEQKVCFYKLLTGALERDCGISPDDVIVALVE  109 (131)
T ss_dssp             EEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
T ss_conf             9999986899999999999999999999749792709999998


Done!