Query gi|254780343|ref|YP_003064756.1| probable cation efflux protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 311
No_of_seqs 153 out of 2479
Neff 8.0
Searched_HMMs 13730
Date Wed Jun 1 03:29:17 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780343.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2qfia2 f.59.1.1 (A:5-208) Fer 100.0 1.5E-43 0 292.3 -25.1 201 8-209 4-204 (204)
2 d3bypa1 d.52.9.1 (A:6-87) Puta 99.6 9.7E-16 7E-20 115.9 10.6 79 211-290 2-82 (82)
3 d2qfia1 d.52.9.1 (A:209-290) F 99.5 5.9E-17 4.3E-21 123.6 -2.6 81 210-291 1-81 (82)
4 d2qfia2 f.59.1.1 (A:5-208) Fer 90.2 0.00049 3.5E-08 41.7 -8.8 87 124-210 12-105 (204)
5 d1ghha_ d.57.1.1 (A:) DNA dama 57.9 4.4 0.00032 16.6 4.5 33 256-288 12-44 (81)
6 d1fftb2 f.17.2.1 (B:27-117) Cy 40.1 8.4 0.00061 14.8 2.9 43 56-98 37-82 (91)
7 d1ib8a2 d.52.4.1 (A:1-90) Hypo 30.2 12 0.00088 13.8 6.8 61 215-275 10-70 (90)
8 d1t82a_ d.38.1.5 (A:) Putative 22.5 5.4 0.0004 16.0 -1.0 10 278-287 115-124 (143)
9 d1dlca3 f.1.3.1 (A:61-289) del 19.5 19 0.0014 12.6 7.8 13 97-109 48-60 (229)
10 d1mlia_ d.58.4.1 (A:) Muconala 17.7 21 0.0015 12.3 3.9 45 234-290 39-85 (96)
No 1
>d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=1.5e-43 Score=292.28 Aligned_cols=201 Identities=24% Similarity=0.432 Sum_probs=190.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 89999999999999999999999999727999999999999999999999999995489986687241467799998968
Q gi|254780343|r 8 NMIRMALWGIPISAAITALKIIAWYVTGFISLLSDGLESIVNIITAIISYFTLKYAYRPADNTHPFGHQKAEYIAAVVEG 87 (311)
Q Consensus 8 ~~~r~~~~~~~~n~~~~~~k~~~g~~t~S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~ 87 (311)
..+|..++++.+|+++++.|+++|++|||+|+++|++||+.|++++++++++.|.++||||++|||||+|.|++++++++
T Consensus 4 ~~~r~~~~~~~~n~~l~i~~~~~~~~t~S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~ 83 (204)
T d2qfia2 4 LVSRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESLAALAQS 83 (204)
T ss_dssp SSSTTSHHHHGGGTTTTTBTTBCCCCTTSSCCCCCCCTTHHHHHHHHHHHHHHTTSSSSCSTTSSCSCCTHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999552999999999999999999999998760799986688642678799999989
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999889999999999863002232210267888872012467999998741033057787599866537887888887
Q gi|254780343|r 88 LLMTNIALIILYESWHNMSHSPSNDFSIMGLFIGFMANIISLFWGKWLIYSGEKNHSAAFKANGQHFVADVVMSAGVLCG 167 (311)
Q Consensus 88 ~~l~~~~~~i~~es~~~l~~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vii~ 167 (311)
++++++++++++|+++++++|++++...+++.+++++.+++..+.++..+.+|+.+|++++++++|+++|+++|++++++
T Consensus 84 ~~l~~~~~~~~~~si~~l~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~~s~~~~a~~~~~~~D~~~s~~vii~ 163 (204)
T d2qfia2 84 MFISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLA 163 (204)
T ss_dssp TTTSSSTTGGGSSCTTSSTTTSSSSTTTSCCCCCGGGSSCGGGGTTTHHHHGGGCCSTTSGGGGGGHHHHTCCSSTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999972011346099999999999999999999887220021452699999999789987999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 765302772246876689999999999899999989974044
Q gi|254780343|r 168 LLLVLITEYTVLDSIIACFMACNILYQGCKVISSSIKNLMDA 209 (311)
Q Consensus 168 ~~~~~~~~~~~~D~i~ai~i~~~i~~~~~~~~~~~~~~Ll~~ 209 (311)
..+.+ ++|+|+||++++++++++++.+++++||+.++|+|+
T Consensus 164 ~~~~~-~~~~~~D~i~aiii~~~i~~~~~~~~~~~~~~Lld~ 204 (204)
T d2qfia2 164 LGLSW-YGWHRADALFALGIGIYILYSALRMGYEAVQSLLDR 204 (204)
T ss_dssp TTSSC-SSTTSSSSSSHHHHTTTTTTTTTTHHHHTGGGSSCC
T ss_pred HHHHH-HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999-384032699999999999999999999999987294
No 2
>d3bypa1 d.52.9.1 (A:6-87) Putative Zinc transporter CzrB {Thermus thermophilus [TaxId: 274]}
Probab=99.63 E-value=9.7e-16 Score=115.91 Aligned_cols=79 Identities=38% Similarity=0.712 Sum_probs=73.4
Q ss_pred CCHHHHHHHHHHHHHCCC--CCCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf 551458999998641588--831151576475579079999999887999899999999999999987798689999605
Q gi|254780343|r 211 VKPEHLEKIKNIIALNAS--GSIGIHDLKIRQAGATFFINFHLVVDSHMIVLDAHKICNKLERSLEENIGQAIITIHIEP 288 (311)
Q Consensus 211 ~~~~~~~~i~~~i~~~~~--~V~~v~~l~~~~~G~~~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~~~~~~v~ih~ep 288 (311)
.|++..++|++.+. +.+ ++.++|++|+|++|+++++++|++||+++|+.++|++++++|+.|++++|..+++||+||
T Consensus 2 lp~e~~~~I~~~i~-~~~~~~vv~vh~lr~r~~G~~~~vd~hi~v~~~~sv~~aH~i~~~ve~~i~~~~~~~~v~vHveP 80 (82)
T d3bypa1 2 LPPEEVERIRAFLQ-ERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPGLQATIHVEP 80 (82)
T ss_dssp CCHHHHHHHHHHHH-HHHTTTCSEEEEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHSTTEEEEEEEEE
T ss_pred CCHHHHHHHHHHHH-HCCCCCCEEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 29899999999999-58997803016887569889899999999898998999999999999999965899779999588
Q ss_pred CC
Q ss_conf 88
Q gi|254780343|r 289 AN 290 (311)
Q Consensus 289 ~~ 290 (311)
|+
T Consensus 81 ~g 82 (82)
T d3bypa1 81 EG 82 (82)
T ss_dssp CC
T ss_pred CC
T ss_conf 99
No 3
>d2qfia1 d.52.9.1 (A:209-290) Ferrous-iron efflux pump FieF (YiiP) {Escherichia coli [TaxId: 562]}
Probab=99.54 E-value=5.9e-17 Score=123.59 Aligned_cols=81 Identities=28% Similarity=0.517 Sum_probs=76.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf 55514589999986415888311515764755790799999998879998999999999999999877986899996058
Q gi|254780343|r 210 AVKPEHLEKIKNIIALNASGSIGIHDLKIRQAGATFFINFHLVVDSHMIVLDAHKICNKLERSLEENIGQAIITIHIEPA 289 (311)
Q Consensus 210 s~~~~~~~~i~~~i~~~~~~V~~v~~l~~~~~G~~~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~~~~~~v~ih~ep~ 289 (311)
++|+++.++|++.+ ++.|||.++|++|+|++|+..++++|++||+++|+.++|++++++|+.|++++|..+++||+|||
T Consensus 1 alP~e~~~~I~~~i-~~~~gV~~vh~lr~r~~G~~~~vd~hi~v~~~~sv~~aH~I~~~ie~~l~~~~~~~~v~iHveP~ 79 (82)
T d2qfia1 1 ALPDEERQEIIDIV-TSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPGSDVIIHQDPC 79 (82)
T ss_dssp CCCTTHHHHHHHHH-TTSSSCSCBCCCCCCTTSCCBCCBSCTTSTTTCSCGGGHHHHHHHHHHTTSSSCCSSCBCCCCCS
T ss_pred CCCHHHHHHHHHHH-HCCCCCEEEEEEEEEEECCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 92989999999999-71999234548999996890999999998999999999999999999999768997799980776
Q ss_pred CC
Q ss_conf 87
Q gi|254780343|r 290 NE 291 (311)
Q Consensus 290 ~~ 291 (311)
+-
T Consensus 80 ~~ 81 (82)
T d2qfia1 80 SV 81 (82)
T ss_dssp CC
T ss_pred CC
T ss_conf 45
No 4
>d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF {Escherichia coli [TaxId: 562]}
Probab=90.24 E-value=0.00049 Score=41.70 Aligned_cols=87 Identities=15% Similarity=-0.012 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 72012467999998741033057787599866537887888887765302-------77224687668999999999989
Q gi|254780343|r 124 ANIISLFWGKWLIYSGEKNHSAAFKANGQHFVADVVMSAGVLCGLLLVLI-------TEYTVLDSIIACFMACNILYQGC 196 (311)
Q Consensus 124 ~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vii~~~~~~~-------~~~~~~D~i~ai~i~~~i~~~~~ 196 (311)
+.++|..++..+.-.+--.+|.++.+|+.|+..|.++++.++.+.-...- .|+.-..++++++.+++++..+.
T Consensus 12 ~~~~n~~l~i~~~~~~~~t~S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~ 91 (204)
T d2qfia2 12 ATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESLAALAQSMFISGSAL 91 (204)
T ss_dssp HHGGGTTTTTBTTBCCCCTTSSCCCCCCCTTHHHHHHHHHHHHHHTTSSSSCSTTSSCSCCTHHHHHHHTTTTTTSSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999955299999999999999999999999876079998668864267879999998999999999
Q ss_pred HHHHHHHHHHHCCC
Q ss_conf 99999899740445
Q gi|254780343|r 197 KVISSSIKNLMDAA 210 (311)
Q Consensus 197 ~~~~~~~~~Ll~~s 210 (311)
.++.++...+.+..
T Consensus 92 ~~~~~si~~l~~~~ 105 (204)
T d2qfia2 92 FLFLTGIQHLISPT 105 (204)
T ss_dssp GGGSSCTTSSTTTS
T ss_pred HHHHHHHHHHHHCC
T ss_conf 99999999997201
No 5
>d1ghha_ d.57.1.1 (A:) DNA damage-inducible protein DinI {Escherichia coli [TaxId: 562]}
Probab=57.88 E-value=4.4 Score=16.60 Aligned_cols=33 Identities=6% Similarity=0.049 Sum_probs=18.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf 999899999999999999987798689999605
Q gi|254780343|r 256 HMIVLDAHKICNKLERSLEENIGQAIITIHIEP 288 (311)
Q Consensus 256 ~~~~~eah~i~~~ie~~l~~~~~~~~v~ih~ep 288 (311)
.++-.-.+.+..++.++|..+||..++.|.+-|
T Consensus 12 ~lp~ga~~aL~~EL~kRl~~~fpD~~~~v~Vr~ 44 (81)
T d1ghha_ 12 PLPAGAIDALAGELSRRIQYAFPDNEGHVSVRY 44 (81)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHCSSSCCEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 898028999999999988735899754079865
No 6
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=40.07 E-value=8.4 Score=14.84 Aligned_cols=43 Identities=23% Similarity=0.247 Sum_probs=26.0
Q ss_pred HHHHHHHHCCCCCCCC-C--CCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999548998668-7--24146779999896889999889999
Q gi|254780343|r 56 SYFTLKYAYRPADNTH-P--FGHQKAEYIAAVVEGLLMTNIALIIL 98 (311)
Q Consensus 56 ~l~~~~~s~k~~d~~~-p--yG~~r~E~l~~l~~~~~l~~~~~~i~ 98 (311)
.+...|.-+|+.++++ | -|-.++|.++..+-.+++..++....
T Consensus 37 ~~~~~ryR~~~~~~~~~~~~~~n~~lEi~WtiIP~iil~~iav~s~ 82 (91)
T d1fftb2 37 VGFAWKYRASNKDAKYSPNWSHSNKVEAVVWTVPILIIIFLAVLTW 82 (91)
T ss_dssp HTTTTTTTTSTTTCSSCCCCCCCSHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHEEEECCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHH
T ss_conf 7640366516876677986567964114689989999999999999
No 7
>d1ib8a2 d.52.4.1 (A:1-90) Hypothetical protein SP14.3 (SP0552) {Streptococcus pneumoniae [TaxId: 1313]}
Probab=30.16 E-value=12 Score=13.83 Aligned_cols=61 Identities=8% Similarity=0.242 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 5899999864158883115157647557907999999988799989999999999999998
Q gi|254780343|r 215 HLEKIKNIIALNASGSIGIHDLKIRQAGATFFINFHLVVDSHMIVLDAHKICNKLERSLEE 275 (311)
Q Consensus 215 ~~~~i~~~i~~~~~~V~~v~~l~~~~~G~~~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~ 275 (311)
..+++++.++--.+.-.++.++...+.|+...+.+.|.=+...++.+...+..++...|..
T Consensus 10 i~e~i~~li~pvv~~G~eL~~ve~~~~~~~~~l~I~ID~~~gv~iddC~~vSr~is~~LD~ 70 (90)
T d1ib8a2 10 IVELVREVVEPVIEAPFELVDIEYGKIGSDMILSIFVDKPEGITLNDTADLTEMISPVLDT 70 (90)
T ss_dssp HHHHHHHHHHHHHCSSSEEEEEEEEEETTEEEEEEEEECSSCCCHHHHHHHHHHHGGGTTT
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 9999999999998679889999999189977999999789996799999999999998654
No 8
>d1t82a_ d.38.1.5 (A:) Putative thioesterase SO4397 {Shewanella oneidensis [TaxId: 70863]}
Probab=22.50 E-value=5.4 Score=16.02 Aligned_cols=10 Identities=10% Similarity=0.401 Sum_probs=3.8
Q ss_pred CCCEEEEEEE
Q ss_conf 9868999960
Q gi|254780343|r 278 GQAIITIHIE 287 (311)
Q Consensus 278 ~~~~v~ih~e 287 (311)
+...+++++|
T Consensus 115 gr~~~~~~v~ 124 (143)
T d1t82a_ 115 RKAKVKLEVQ 124 (143)
T ss_dssp CCEEEEEEEE
T ss_pred CEEEEEEEEE
T ss_conf 8079999999
No 9
>d1dlca3 f.1.3.1 (A:61-289) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis tenebrionis, CRYIIIA (BT13) [TaxId: 1444]}
Probab=19.54 E-value=19 Score=12.56 Aligned_cols=13 Identities=8% Similarity=0.097 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999986300
Q gi|254780343|r 97 ILYESWHNMSHSP 109 (311)
Q Consensus 97 i~~es~~~l~~~~ 109 (311)
.+.+.++++++..
T Consensus 48 ~~~~~ve~lId~~ 60 (229)
T d1dlca3 48 AFMEQVEALMDQK 60 (229)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999899
No 10
>d1mlia_ d.58.4.1 (A:) Muconalactone isomerase, MLI {Pseudomonas putida [TaxId: 303]}
Probab=17.71 E-value=21 Score=12.30 Aligned_cols=45 Identities=13% Similarity=0.062 Sum_probs=23.6
Q ss_pred EEEEEEEE-CCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCC-EEEEEEECCC
Q ss_conf 15764755-790799999998879998999999999999999877986-8999960588
Q gi|254780343|r 234 HDLKIRQA-GATFFINFHLVVDSHMIVLDAHKICNKLERSLEENIGQA-IITIHIEPAN 290 (311)
Q Consensus 234 ~~l~~~~~-G~~~~v~~~i~v~~~~~~~eah~i~~~ie~~l~~~~~~~-~v~ih~ep~~ 290 (311)
+-.|.|+. |...-+.+ ..++ +..|.|+ .|. ..|.. ..+|++.|-.
T Consensus 39 ~~~~LWRv~G~~~nisI-fdv~---s~deLh~-------iL~-~LPL~p~m~ieVtpL~ 85 (96)
T d1mlia_ 39 TWRHLWRIAGHYANYSV-FDVP---SVEALHD-------TLM-QLPLFPYMDIEVDGLC 85 (96)
T ss_pred CCEEEEEECCCCEEEEE-EECC---CHHHHHH-------HHH-CCCCCCCCCCEEEECC
T ss_conf 81799996477427899-9769---8799999-------997-1999641144677746
Done!