RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780343|ref|YP_003064756.1| probable cation efflux protein
[Candidatus Liberibacter asiaticus str. psy62]
(311 letters)
>gnl|CDD|162291 TIGR01297, CDF, cation diffusion facilitator family transporter.
This model describes a broadly distributed family of
transporters, a number of which have been shown to
transport divalent cations of cobalt, cadmium and/or
zinc. The family has six predicted transmembrane
domains. Members of the family are variable in length
because of variably sized inserts, often containing
low-complexity sequence.
Length = 268
Score = 174 bits (444), Expect = 2e-44
Identities = 88/270 (32%), Positives = 146/270 (54%), Gaps = 4/270 (1%)
Query: 22 AITALKIIAWYVTGFISLLSDGLESIVNIITAIISYFTLKYAYRPADNTHPFGHQKAEYI 81
+ +KI+ ++G ++LL+D + S+ ++ + I+ L+ + RPAD HPFGH +AE +
Sbjct: 1 LLMLIKIVGGLLSGSLALLADAIHSLSDVAASAIALLALRISRRPADERHPFGHGRAEIL 60
Query: 82 AAVVEGLLMTNIALIILYESWHNMSHSPSNDFSIMGLFIGFMANIISLFWGKWLIYSGEK 141
AA++ GL + +AL ILYE+ + + L + + I++L +L G +
Sbjct: 61 AALLNGLFLVVVALFILYEAIERLINPEPEIDGGTMLIVAIVGLIVNLILALYLHRVGHR 120
Query: 142 NHSAAFKANGQHFVADVVMSAGVLCGLLLVLITEYTVLDSIIACFMACNILYQGCKVISS 201
S A +A H ++D + S GVL G LL+ + D I A ++ ILY +++
Sbjct: 121 LGSLALRAAALHVLSDALSSVGVLIGALLIYFG-WHWADPIAALLISLLILYTAFRLLKE 179
Query: 202 SIKNLMDAAVKPEHLEKIKNIIALNASGSIGIHDLKIRQAG-ATFFINFHLVVDSHMIVL 260
SI L+DAA E LE+IK I L+ G G+HDL I + G F++ H+VVD + +
Sbjct: 180 SINVLLDAAPDEEDLEEIKKAI-LSIPGVKGVHDLHIWRIGPGKLFLDVHVVVDPDLDLK 238
Query: 261 DAHKICNKLERSLEENI-GQAIITIHIEPA 289
AH I ++ER + + G +TI +EP
Sbjct: 239 QAHDIALEIEREILKRHPGIEHVTIQVEPC 268
>gnl|CDD|181919 PRK09509, fieF, ferrous iron efflux protein F; Reviewed.
Length = 299
Score = 142 bits (361), Expect = 9e-35
Identities = 84/285 (29%), Positives = 161/285 (56%), Gaps = 11/285 (3%)
Query: 9 MIRMALWGIPISAAITAL-KIIAWYVTGFISLLSDGLESIVNIITAIISYFTLKYAYRPA 67
++ A A++ L KI AW+ TG +SLL+ ++S+V+I ++ + ++Y+ +PA
Sbjct: 8 LVSRAAIAATAMASLLLLIKIFAWWYTGSVSLLAALVDSLVDIAASLTNLLVVRYSLQPA 67
Query: 68 DNTHPFGHQKAEYIAAVVEGLLMTNIAL-IILYESWHNMSHSPSNDFSIMGLFIGFMANI 126
D+ H FGH KAE +AA+ + + ++ AL + L H +S +P ND + G+ + +A I
Sbjct: 68 DDEHTFGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPMNDPGV-GIIVTLVALI 126
Query: 127 ISLF---WGKWLIYSGEKNHSAAFKANGQHFVADVVMSAGVLCGLLLVLITEYTVLDSII 183
+L + +W++ K S A +A+ H+ +DV+M+ +L L L + D++
Sbjct: 127 CTLILVTFQRWVV---RKTQSQAVRADMLHYQSDVMMNGAILLALGLSWYG-WHRADALF 182
Query: 184 ACFMACNILYQGCKVISSSIKNLMDAAVKPEHLEKIKNIIALNASGSIGIHDLKIRQAGA 243
A + ILY ++ ++++L+D A+ E ++I +I+ + G G HDL+ RQ+G
Sbjct: 183 ALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDIV-TSWPGVSGAHDLRTRQSGP 241
Query: 244 TFFINFHLVVDSHMIVLDAHKICNKLERSLEENIGQAIITIHIEP 288
T FI HL ++ ++ ++ AH I +++E++L + + IH +P
Sbjct: 242 TRFIQLHLEMEDNLPLVQAHMIADQVEQALLRRFPGSDVIIHQDP 286
>gnl|CDD|179593 PRK03557, PRK03557, zinc transporter ZitB; Provisional.
Length = 312
Score = 65.2 bits (159), Expect = 2e-11
Identities = 49/250 (19%), Positives = 118/250 (47%), Gaps = 6/250 (2%)
Query: 6 QNNMIRMALWGIPISAAITALKIIAWYVTGFISLLSDGLESIVNIITAIISYFTLKYAYR 65
++N R L+ ++A +++I +++G ++LL+D + + + + ++++ R
Sbjct: 14 EDNNARRLLYAFGVTAGFMLVEVIGGFLSGSLALLADAGHMLTDAAALLFALLAVQFSRR 73
Query: 66 PADNTHPFGHQKAEYIAAVVEGLLMTNIALIILYESWHNMSH-SPSNDFSIMGLFI-GFM 123
P H FG + +AA V + + I ++I++E+ P +M + + G +
Sbjct: 74 PPTIRHTFGWLRLTTLAAFVNAIALVVITILIVWEAIERFRTPRPVAGGMMMAIAVAGLL 133
Query: 124 ANIISLFWGKWLIYSGEKNHSAAFKANGQHFVADVVMSAGVLCGLLLVLITEYTVLDSII 183
ANI+S WL++ G + + +A H + D++ S G + L+++ T +T D I+
Sbjct: 134 ANILSF----WLLHHGSEEKNLNVRAAALHVLGDLLGSVGAIIAALIIIWTGWTPADPIL 189
Query: 184 ACFMACNILYQGCKVISSSIKNLMDAAVKPEHLEKIKNIIALNASGSIGIHDLKIRQAGA 243
+ ++ +L +++ S+ L++ A + ++K + +H + + G
Sbjct: 190 SILVSVLVLRSAWRLLKESVNELLEGAPVSLDIAELKRRLCREIPEVRNVHHVHVWMVGE 249
Query: 244 TFFINFHLVV 253
+ H+ V
Sbjct: 250 KPVMTLHVQV 259
>gnl|CDD|150576 pfam09920, DUF2150, Uncharacterized protein conserved in archaea
(DUF2150). This domain, found in various hypothetical
archaeal proteins, has no known function.
Length = 190
Score = 30.4 bits (69), Expect = 0.58
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 155 VADVVMSAGVLCGLLLVLITEYTVLDSIIACFMACNILYQGCKVISSSIKNLMDAAVKPE 214
V D+V++ + + +V S++A F A +G + IK L+ AA K E
Sbjct: 71 VRDIVLAEVEFDDEDKDELID-SVQTSLVAVFAAAEEYLEGGFDPDADIKELVKAAAKAE 129
Query: 215 HLEKIKNIIALNASGSIG 232
E + AL IG
Sbjct: 130 AEEDLDA--ALGYVAQIG 145
>gnl|CDD|182509 PRK10513, PRK10513, sugar phosphate phosphatase; Provisional.
Length = 270
Score = 28.5 bits (64), Expect = 2.6
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 1 MKVDDQNN---MIRMALWGIPISAAITALKIIAWYVTGFISLLSDG 43
M + DQ N MI A G+ + AI ++K +A +VT S L DG
Sbjct: 216 MAIGDQENDIAMIEYAGVGVAMGNAIPSVKEVAQFVTK--SNLEDG 259
>gnl|CDD|161935 TIGR00574, dnl1, DNA ligase I, ATP-dependent (dnl1). All proteins
in this family with known functions are ATP-dependent
DNA ligases. Functions include DNA repair, DNA
replication, and DNA recombination (or any process
requiring ligation of two single-stranded DNA sections).
This family is based on the phylogenomic analysis of JA
Eisen (1999, Ph.D. Thesis, Stanford University).
Length = 514
Score = 27.3 bits (61), Expect = 5.9
Identities = 23/91 (25%), Positives = 30/91 (32%), Gaps = 10/91 (10%)
Query: 202 SIKNLMDAAVKPEHLEKIKNIIALNASGSIGIHDLKIRQAGATFFINFHLVVDSHMIVLD 261
IK L + LE I + IGI + I A A F L SH V
Sbjct: 79 KIKLLKSLLKRASPLEAKYLIRTILGDLRIGIAEKTILDALA---KAFLL---SHPDVER 132
Query: 262 AHKICNKLE----RSLEENIGQAIITIHIEP 288
A + N L LE + + I+
Sbjct: 133 AFNLTNDLGKVAKILLEPGLRGLDKDLSIQL 163
>gnl|CDD|129984 TIGR00906, 2A0303, cationic amino acid transport permease.
Length = 557
Score = 27.1 bits (60), Expect = 6.4
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 144 SAAFKANGQHFVADVVMSAGVLCGLLLVLIT 174
AF+ G A +++ G LCG+ L+
Sbjct: 302 PVAFEYVGWG-PAKYIVAVGALCGMSTSLLG 331
>gnl|CDD|129899 TIGR00819, ydaH, p-Aminobenzoyl-glutamate transporter family. The
p-Aminobenzoyl-glutamate transporter family includes two
transporters, the AbgT (YdaH) protein of E. coli and
MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic
in wild type cells, but when expressed on a high copy
number plasmid, or when expressed at higher levels due
to mutation, it allows utilization of
p-aminobenzoyl-glutamate as a source of p-aminobenzoate
for p-aminobenzoate auxotrophs. p-Aminobenzoate is a
constituent of and a precursor for the biosynthesis of
folic acid.
Length = 513
Score = 26.8 bits (59), Expect = 7.3
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 105 MSHSPSNDFSIMGLFIGFMANIISLFWGKWLIYSGEKNHSAAFKANGQHFVADVVMS-AG 163
SHS + S M LFI F ++I S LI G + F A G+H +A + + AG
Sbjct: 114 ASHSNAKLASFMVLFIAFFSHIASDAALVILIPLG----ALIFHALGRHPLAGLAAAFAG 169
Query: 164 VLCG----LLLVLI 173
V CG L + I
Sbjct: 170 VGCGFSANLFIGTI 183
>gnl|CDD|177391 PHA02557, 22, prohead core protein; Provisional.
Length = 271
Score = 26.6 bits (59), Expect = 8.5
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 243 ATFFINFHLVVDSHMIVL-DAH--KICNKLERSLEENIGQAIITIHIEPANEV----THG 295
F F V H + L ++H +I K E +EE + +A+ I + A + H
Sbjct: 37 EKFSTVFEAAVKQHAVKLAESHIAEIAEKAEELVEEALEEAVEAIETKLAEDADKYLDHL 96
Query: 296 IHVPLKENK 304
L ENK
Sbjct: 97 AKEWLAENK 105
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.324 0.138 0.412
Gapped
Lambda K H
0.267 0.0640 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,959,849
Number of extensions: 315941
Number of successful extensions: 951
Number of sequences better than 10.0: 1
Number of HSP's gapped: 936
Number of HSP's successfully gapped: 45
Length of query: 311
Length of database: 5,994,473
Length adjustment: 93
Effective length of query: 218
Effective length of database: 3,984,929
Effective search space: 868714522
Effective search space used: 868714522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (25.9 bits)