RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780343|ref|YP_003064756.1| probable cation efflux protein
[Candidatus Liberibacter asiaticus str. psy62]
(311 letters)
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc
transporter, cell inner membrane, cell membrane, ION
transport, iron transport; 2.90A {Escherichia coli k-12}
PDB: 2qfi_A (A:1-202)
Length = 202
Score = 96.1 bits (238), Expect = 5e-21
Identities = 49/200 (24%), Positives = 107/200 (53%), Gaps = 1/200 (0%)
Query: 11 RMALWGIPISAAITALKIIAWYVTGFISLLSDGLESIVNIITAIISYFTLKYAYRPADNT 70
R A+ +++ + +KI AW+ TG +S+L+ ++S+V+I ++ + ++Y+ +PAD+
Sbjct: 4 RAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDN 63
Query: 71 HPFGHQKAEYIAAVVEGLLMTNIALIILYESWHNMSHSPSNDFSIMGLFIGFMANIISLF 130
H FGH KAE +AA+ + + ++ AL + ++ +G+ + +A I ++
Sbjct: 64 HSFGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVALICTII 123
Query: 131 WGKWLIYSGEKNHSAAFKANGQHFVADVVMSAGVLCGLLLVLITEYTVLDSIIACFMACN 190
+ + + S A +A+ H+ +DV+M+ +L L L + D++ A +
Sbjct: 124 LVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLALGLSW-YGWHRADALFALGIGIY 182
Query: 191 ILYQGCKVISSSIKNLMDAA 210
ILY ++ ++++L+D A
Sbjct: 183 ILYSALRMGYEAVQSLLDRA 202
>3byp_A CZRB protein; membrane protein, zinc transporter, transport
protein; 1.70A {Thermus thermophilus} (A:)
Length = 94
Score = 86.0 bits (213), Expect = 6e-18
Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 206 LMDAAVKPEHLEKIKNIIALNAS-GSIGIHDLKIRQAGATFFINFHLVVDSHMIVLDAHK 264
LMD + PE +E+I+ + ++ +HDLK R+AG F+ FHLVV V +AH+
Sbjct: 2 LMDEGLPPEEVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHR 61
Query: 265 ICNKLERSLEENIGQAIITIHIEPANEVTH 294
+C++LER+L + TIH+EP E
Sbjct: 62 LCDELERALAQAFPGLQATIHVEPEGERKR 91
>2zzt_A Putative uncharacterized protein; cation diffusion
facilitator (CDF), transporter, zinc, membrane protein,
cytosolic domain; 2.84A {Thermotoga maritima} (A:)
Length = 107
Score = 76.8 bits (189), Expect = 3e-15
Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 2/99 (2%)
Query: 209 AAVKPEHLEKIKNIIALNASGSIGIHDLKIRQAGATFFINFHLVVDSHMIVLDAHKICNK 268
+ + + I ++ H ++IR+ G +FI + VD V DAH++ K
Sbjct: 5 KRTELDXYDDIFAVL-ERFPNVHNPHRVRIRRVGTKYFIEXDIEVDGKXSVKDAHELTVK 63
Query: 269 LERSLEENIGQ-AIITIHIEPANEVTHGIHVPLKENKNQ 306
+ + + +TIH+EP V K K
Sbjct: 64 IRKEXLKRRDDIEDVTIHVEPLGNVEEEGFGLKKGEKKH 102
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc
transporter, cell inner membrane, cell membrane, ION
transport, iron transport; 2.90A {Escherichia coli k-12}
PDB: 2qfi_A (A:203-283)
Length = 81
Score = 75.1 bits (185), Expect = 1e-14
Identities = 23/82 (28%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 211 VKPEHLEKIKNIIALNASGSIGIHDLKIRQAGATFFINFHLVVDSHMIVLDAHKICNKLE 270
+ E ++I +I+ + G G HDL+ RQ+G T FI HL ++ + ++ AH + +++E
Sbjct: 1 LPDEERQEIIDIV-TSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVE 59
Query: 271 RSLEENIGQAIITIHIEPANEV 292
+++ + + IH +P + V
Sbjct: 60 QAILRRFPGSDVIIHQDPCSVV 81
>2c1i_A Peptidoglycan glcnac deacetylase; carbohydrate esterase,
peptidoglycan deacetylase, metalloenzyme, D275N mutant,
hydrolase; HET: MES; 1.35A {Streptococcus pneumoniae}
(A:32-132)
Length = 101
Score = 28.0 bits (62), Expect = 1.6
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 194 QGCKVISSSIKNLMDAAVKPEHLEKIKNII 223
QG KVISS ++ L++ VK + LE N++
Sbjct: 21 QGEKVISS-VRELINQDVK-DKLESKDNLV 48
>1up8_A Vanadium-dependent bromoperoxidase 1; haloperoxidase,
vanadate; 2.20A {Corallina pilulifera}
(A:1-56,A:133-233,A:316-598)
Length = 440
Score = 27.2 bits (59), Expect = 3.2
Identities = 15/161 (9%), Positives = 35/161 (21%), Gaps = 10/161 (6%)
Query: 21 AAITALKIIAWYVTGFISLLSDGLESIVNIITAIISYFTLKYAY---RPADNTHPFGHQK 77
+ ++ IA I D + I K P +
Sbjct: 255 GGLISVNKIAAQKGESIFPEVDLAVEELGDILEKAEISNRKQNIADGDPDPDPSFLLPMA 314
Query: 78 AEYIAAVVEGL-----LMTNIALIILYESWHNMSHSPSNDFSIMGLFIGFMANIISLFWG 132
+ ++ + IL + + ++
Sbjct: 315 FAEGSPFHPSYGSGHAVVAGACVTILKAFFDSGIEIDQVFEVDKDEDKLVKSSFKGTLTV 374
Query: 133 KWLIYSGEKNHSAAFKANGQHFVADVVMSAGVLCGLLLVLI 173
+ N + G H+ +D +L G + +
Sbjct: 375 AGELNKLADNIAIGRNMAGVHYFSDQF--ESLLLGEQVAIG 413
>3bpw_A Orotidine 5'-phosphate decarboxylase; P. falciparum,
orotidine 5'- monophosphate decarboxylase, XMP, lyase,
pyrimidine biosynthesis; HET: XMP; 1.70A {Plasmodium
falciparum} PDB: 2qaf_A* 3bar_A* 2q8z_A* 2f84_A 2q8l_A
2za1_A* 2za2_A 2za3_A* 2zcg_A (A:)
Length = 342
Score = 26.8 bits (58), Expect = 3.4
Identities = 11/95 (11%), Positives = 28/95 (29%), Gaps = 2/95 (2%)
Query: 214 EHLEKIKNIIALNASGSIGIHDLKIRQAGATFFINFHLVVDSHMIVLDAHKICNKLERSL 273
++ K A G + + + + ++ M + D + +
Sbjct: 115 KYALTFKMNFAFYIP--YGSVGIDVLKNVFDYLYELNIPTILDMKINDIGNTVKNYRKFI 172
Query: 274 EENIGQAIITIHIEPANEVTHGIHVPLKENKNQCL 308
E + T++I + I ++NK
Sbjct: 173 FEYLKSDSCTVNIYMGTNMLKDICYDEEKNKYYSA 207
>1ckm_A MRNA capping enzyme; nucleotidyltransferase; HET: GTP; 2.50A
{Paramecium bursaria chlorella virus 1} (A:240-317)
Length = 78
Score = 25.6 bits (56), Expect = 7.7
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 221 NIIALNASGSIGIHDLKIRQ 240
+ I ++ G+IGI D +R+
Sbjct: 5 DFIIMSEDGTIGIFDPNLRK 24
>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane
protease, CBS domain, hydrolase, metal-binding,
transmembrane; 3.30A {Methanocaldococcus jannaschii}
(A:1-144)
Length = 144
Score = 25.6 bits (56), Expect = 8.4
Identities = 20/124 (16%), Positives = 37/124 (29%), Gaps = 19/124 (15%)
Query: 14 LWGIPISAAITALKIIAWYVTGFISLLSDGLESIVNIITAIISYFTLKYAYRPADNTHPF 73
+ GIPI IT + + + + + + I F H
Sbjct: 10 IMGIPIELHITFILFLVVI------IGLSIMNNSIFWAVLFILLFVSVVL-------HEL 56
Query: 74 GHQKAEYIAAVVEGLLMTNIALIIL--YESWHNMSHSPSNDFSIMGLFIGFMANIISLFW 131
GH A G+ + I L+ + + I G + F+ I+ L
Sbjct: 57 GH----SYVAKKYGVKIEKILLLPIGGVAMMDKIPKEGELRIGIAGPLVSFIIGIVLLIV 112
Query: 132 GKWL 135
++
Sbjct: 113 SQFF 116
>2olt_A Hypothetical protein; NP_719307.1, DUF47, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 2.00A {Shewanella oneidensis mr-1} PDB:
2iiu_A* (A:)
Length = 227
Score = 25.6 bits (55), Expect = 9.7
Identities = 12/126 (9%), Positives = 28/126 (22%), Gaps = 5/126 (3%)
Query: 188 ACNILYQGCKVISSSIKNLMDAAVKPEHLEKIKNIIALNASGSIGIHDLKIRQAGATFFI 247
+ +Y ++ + + ++ K I +IR +
Sbjct: 22 HXDKVYDCASLLVPFFEATITGNWDDA-VQIRKQISLAEKQ--GDSLKREIRLTLPSGLF 78
Query: 248 NFHLVVDSHMIVLDAHKICNKLERSLE--ENIGQAIITIHIEPANEVTHGIHVPLKENKN 305
D ++ KI NK + I P + +
Sbjct: 79 XPVERTDLLELLTQQDKIANKAKDISGRVIGRQLLIPQALQVPFIAYLQRCIDAVGLAQQ 138
Query: 306 QCLKSL 311
+
Sbjct: 139 VINELD 144
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.324 0.138 0.412
Gapped
Lambda K H
0.267 0.0652 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,267,817
Number of extensions: 94655
Number of successful extensions: 337
Number of sequences better than 10.0: 1
Number of HSP's gapped: 331
Number of HSP's successfully gapped: 21
Length of query: 311
Length of database: 4,956,049
Length adjustment: 88
Effective length of query: 223
Effective length of database: 1,981,209
Effective search space: 441809607
Effective search space used: 441809607
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (24.7 bits)