BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780343|ref|YP_003064756.1| probable cation efflux protein
[Candidatus Liberibacter asiaticus str. psy62]
         (311 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780343|ref|YP_003064756.1| probable cation efflux protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 311

 Score =  633 bits (1633), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/311 (100%), Positives = 311/311 (100%)

Query: 1   MKVDDQNNMIRMALWGIPISAAITALKIIAWYVTGFISLLSDGLESIVNIITAIISYFTL 60
           MKVDDQNNMIRMALWGIPISAAITALKIIAWYVTGFISLLSDGLESIVNIITAIISYFTL
Sbjct: 1   MKVDDQNNMIRMALWGIPISAAITALKIIAWYVTGFISLLSDGLESIVNIITAIISYFTL 60

Query: 61  KYAYRPADNTHPFGHQKAEYIAAVVEGLLMTNIALIILYESWHNMSHSPSNDFSIMGLFI 120
           KYAYRPADNTHPFGHQKAEYIAAVVEGLLMTNIALIILYESWHNMSHSPSNDFSIMGLFI
Sbjct: 61  KYAYRPADNTHPFGHQKAEYIAAVVEGLLMTNIALIILYESWHNMSHSPSNDFSIMGLFI 120

Query: 121 GFMANIISLFWGKWLIYSGEKNHSAAFKANGQHFVADVVMSAGVLCGLLLVLITEYTVLD 180
           GFMANIISLFWGKWLIYSGEKNHSAAFKANGQHFVADVVMSAGVLCGLLLVLITEYTVLD
Sbjct: 121 GFMANIISLFWGKWLIYSGEKNHSAAFKANGQHFVADVVMSAGVLCGLLLVLITEYTVLD 180

Query: 181 SIIACFMACNILYQGCKVISSSIKNLMDAAVKPEHLEKIKNIIALNASGSIGIHDLKIRQ 240
           SIIACFMACNILYQGCKVISSSIKNLMDAAVKPEHLEKIKNIIALNASGSIGIHDLKIRQ
Sbjct: 181 SIIACFMACNILYQGCKVISSSIKNLMDAAVKPEHLEKIKNIIALNASGSIGIHDLKIRQ 240

Query: 241 AGATFFINFHLVVDSHMIVLDAHKICNKLERSLEENIGQAIITIHIEPANEVTHGIHVPL 300
           AGATFFINFHLVVDSHMIVLDAHKICNKLERSLEENIGQAIITIHIEPANEVTHGIHVPL
Sbjct: 241 AGATFFINFHLVVDSHMIVLDAHKICNKLERSLEENIGQAIITIHIEPANEVTHGIHVPL 300

Query: 301 KENKNQCLKSL 311
           KENKNQCLKSL
Sbjct: 301 KENKNQCLKSL 311


>gi|254781019|ref|YP_003065432.1| hydroxymethylglutaryl-coenzyme A synthase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 396

 Score = 24.6 bits (52), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 83  AVVEGLLMTNIALIILYESWHNMSHSPSNDFSIMGLF 119
           A+V+G   T I L  L   WH+   +  +DF+    F
Sbjct: 194 ALVDGKYSTKIYLQSLEAVWHDYQKNKGHDFNDFQYF 230


>gi|254780494|ref|YP_003064907.1| cation diffusion facilitator family transporter, putative
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 314

 Score = 23.9 bits (50), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 14/61 (22%), Positives = 27/61 (44%)

Query: 35  GFISLLSDGLESIVNIITAIISYFTLKYAYRPADNTHPFGHQKAEYIAAVVEGLLMTNIA 94
           GF S L  G+ ++  ++  +I+    K  YR  +    FG    E +      +++  +A
Sbjct: 45  GFYSYLEAGMTALSLLVAKLIARDVSKVDYRERERYFQFGFWHFEPMVLAFNSVILICVA 104

Query: 95  L 95
           L
Sbjct: 105 L 105


>gi|254780424|ref|YP_003064837.1| transcriptional regulator protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 144

 Score = 23.5 bits (49), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 10/64 (15%)

Query: 178 VLDSIIACFMACNILYQGCKVISSSIKNLMDAAVKPEHLEKIKNIIALNASGSIGIHDLK 237
           VL+S I+ F   ++    C  ISS   N+MD    P+ L+       LN    I I D+K
Sbjct: 65  VLESPISFFF--DVSPTVCSDISSEENNVMDFISTPDGLQ-------LNRY-FIQIDDVK 114

Query: 238 IRQA 241
           +RQ 
Sbjct: 115 VRQK 118


>gi|254781098|ref|YP_003065511.1| cell division protein FtsW peptidoglycan synthesis [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 385

 Score = 23.1 bits (48), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 9/49 (18%)

Query: 108 SPSN--DFSIMGLFIGFMANIISLFWG-------KWLIYSGEKNHSAAF 147
           SP N  + + + LF+  +A  ++LFWG       +WL  +G     + F
Sbjct: 76  SPKNVKNTAFILLFLSLIAMFLTLFWGVEIKGAKRWLYIAGTSVQPSEF 124


>gi|254780925|ref|YP_003065338.1| bifunctional preprotein translocase subunit SecD/SecF [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 833

 Score = 22.3 bits (46), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 5/33 (15%)

Query: 83  AVVEGLLMTNIALIILYESWHNMSHSPSNDFSI 115
           A+V GL++  + +I+LY  W  ++     DFSI
Sbjct: 367 AIVAGLVLIVLFMIVLYGKWGLVA-----DFSI 394


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.324    0.138    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 199,940
Number of Sequences: 1233
Number of extensions: 8024
Number of successful extensions: 31
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 11
length of query: 311
length of database: 328,796
effective HSP length: 74
effective length of query: 237
effective length of database: 237,554
effective search space: 56300298
effective search space used: 56300298
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 38 (19.2 bits)