Query         gi|254780344|ref|YP_003064757.1| 7-cyano-7-deazaguanine reductase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 154
No_of_seqs    132 out of 756
Neff          4.8 
Searched_HMMs 23785
Date          Mon May 30 09:09:08 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780344.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3bp1_A NADPH-dependent 7-cyano 100.0 2.5E-41 1.4E-45  268.0  11.5  101   43-145   188-290 (290)
  2 3bp1_A NADPH-dependent 7-cyano  99.7   7E-17 2.9E-21  120.9  10.4  105    6-111    16-134 (290)
  3 1wur_A GTP cyclohydrolase I; b  97.2  0.0055 2.3E-07   37.3  11.0   76   44-119   100-175 (220)
  4 1is8_A GTP cyclohydrolase I; e  97.1  0.0054 2.3E-07   37.3   9.7   79   41-119   110-188 (230)
  5 1a8r_A GTP cyclohydrolase I; p  96.9  0.0067 2.8E-07   36.7   9.0   79   41-119    99-177 (221)
  6 3hjh_A Transcription-repair-co  31.4      11 0.00047   17.4   0.7   14  134-147   428-441 (483)
  7 1j6r_A Methionine synthase; st  20.4      42  0.0018   13.9   2.4   15   92-106   135-149 (214)
  8 3o1k_A Dihydroneopterin aldola  17.3      49  0.0021   13.5   7.3   65   54-118    38-112 (132)
  9 2ccw_A Azurin II, AZN-2; elect  16.5      51  0.0022   13.4   3.6   46   12-57     66-117 (129)
 10 1egw_A MADS box transcription   14.5      16 0.00067   16.4  -1.4   46   45-94     31-76  (77)

No 1  
>3bp1_A NADPH-dependent 7-cyano-7-deazaguanine reductase; alpha-beta structure, structural genomics, PSI-2; HET: MSE GUN; 1.53A {Vibrio cholerae o1 biovar eltor str}
Probab=100.00  E-value=2.5e-41  Score=267.97  Aligned_cols=101  Identities=26%  Similarity=0.476  Sum_probs=89.6

Q ss_pred             EECCEEEEECCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECC
Q ss_conf             96141685268995775899999976986766989999999997304523899999999999986188289999998517
Q gi|254780344|r   43 FTIPEFTSLCPVTSQPDFAHMILDYIPKDWLIESKSLKLFMASFRNHHSFHEDCTIYIARRLVTILDPKWLRIGAYWYPR  122 (154)
Q Consensus        43 ~~~~EftslCpvtgqPD~a~i~I~y~~~~~~vEskSLklYL~Sfrn~~~fhE~~v~~I~~dL~~~~~P~~l~V~~~f~~R  122 (154)
                      +.+..|||+||||||||||+|+|.|.+.+  ++.+|||+||.|||||++|||+|+|+||.||+++|+|.||+|+|+|+||
T Consensus       188 l~S~lfrS~CPvT~QPD~a~i~I~y~~~~--~~~~sL~~Yl~SfR~~~~FhE~~ve~If~dl~~~~~p~~l~V~~~~~rR  265 (290)
T 3bp1_A          188 LHSHLLKSNCLITNQPDWGSVEIAYHGAK--MNREALLRYLVSFREHNEFHEQCVERIFTDIMRYCQPQSLTVYARYTRR  265 (290)
T ss_dssp             EEEEEEEEC------CEEEEEEEEEEEEE--ECHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHHHHCCSEEEEEEEECCB
T ss_pred             EEECCEECCCCCCCCCCEEEEEEEECCCC--CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECC
T ss_conf             98347132698989986069999981752--4899999999999722757999999999999985497589999998667


Q ss_pred             CCCCCCEEEECCCC--CCCCCCCCC
Q ss_conf             98313504007999--976526888
Q gi|254780344|r  123 GGIPIDIFWQTSAP--PEGVFLPNQ  145 (154)
Q Consensus       123 GGI~i~~~~~~~~~--p~~~~~p~~  145 (154)
                      |||||||+|.+...  +.+..+.+|
T Consensus       266 GGidInp~Rs~~~~~~~~~~Rl~RQ  290 (290)
T 3bp1_A          266 GGLDINPFRSSHQSAPNHNQRMARQ  290 (290)
T ss_dssp             TTEEEEEEEESSCCCCSCCCCBTTC
T ss_pred             CCCCCCEECCCCCCCCCCCCCCCCC
T ss_conf             8831765745898899876421269


No 2  
>3bp1_A NADPH-dependent 7-cyano-7-deazaguanine reductase; alpha-beta structure, structural genomics, PSI-2; HET: MSE GUN; 1.53A {Vibrio cholerae o1 biovar eltor str}
Probab=99.70  E-value=7e-17  Score=120.88  Aligned_cols=105  Identities=21%  Similarity=0.263  Sum_probs=91.4

Q ss_pred             HHCCH--HCCCCCCCCCCCCHHHHHCCCCCCCCC----------CEEEEEECCEEEEECCCCCCCEEEEEEEEE-CCCCC
Q ss_conf             21201--037655577788986820013777886----------479999614168526899577589999997-69867
Q gi|254780344|r    6 LNGLS--ILGGKAKPCDDPNEALLERIPSQNKNL----------NYVVRFTIPEFTSLCPVTSQPDFAHMILDY-IPKDW   72 (154)
Q Consensus         6 ~~~lt--~LG~~t~~p~~p~~~lLe~i~~~~~~~----------~~~i~~~~~EftslCpvtgqPD~a~i~I~y-~~~~~   72 (154)
                      .+.+.  .||+++.||+.|+|++|.+|||...+.          .+.+.|++|||+||. ..|+|..|.++|.+ +.++.
T Consensus        16 ~~~~~~~~LGk~~~yp~~YdP~lL~pI~R~~~R~~l~i~~~l~f~G~DiWnaYElSWLn-~~G~P~v~i~~i~iP~~S~~   94 (290)
T 3bp1_A           16 AKELASLTLGKKTEYANQYDPSLLQPVPRSLNRNDLHLSATLPFQGCDIWTLYELSWLN-QKGLPQVAIGEVSIPATSAN   94 (290)
T ss_dssp             --------------CCCCCCGGGCCEEEHHHHHGGGTCCSSCSCEEEEEEEEEEEEEEC-TTSCEEEEEEEEEEETTSSE
T ss_pred             HHHHHCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHCCCCCCCCCCCEEECHHHHHHHCC-CCCCCEEEEEEEEEECCCCC
T ss_conf             46662489999878877788578123665010644499867984655733411124317-99984799999999479985


Q ss_pred             CCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHCCCC
Q ss_conf             669899999999973045-238999999999999861882
Q gi|254780344|r   73 LIESKSLKLFMASFRNHH-SFHEDCTIYIARRLVTILDPK  111 (154)
Q Consensus        73 ~vEskSLklYL~Sfrn~~-~fhE~~v~~I~~dL~~~~~P~  111 (154)
                      +|||||||||||||+++. ...+++.+.|..||.++++-.
T Consensus        95 iVESKSlKLYLNSfn~~~F~s~~~v~~~I~~DLs~~~~~~  134 (290)
T 3bp1_A           95 LIESKSFKLYLNSYNQTRFASWDEVQTRLVHDLSACAGET  134 (290)
T ss_dssp             EECHHHHHHHHHTTTTCBCSCHHHHHHHHHHHHHHHHTSC
T ss_pred             CHHHHHHHHHHHHHHCEECCCHHHHHHHHHHHHHHHHCCC
T ss_conf             1103678888777541214889999999999999985996


No 3  
>1wur_A GTP cyclohydrolase I; beta barrel, protein-inhibitor complex, pteridine, tetrahydrobiopterin, structural genomics; HET: 8DG; 1.82A {Thermus thermophilus} SCOP: d.96.1.1 PDB: 1wm9_A* 1wuq_A*
Probab=97.22  E-value=0.0055  Score=37.28  Aligned_cols=76  Identities=20%  Similarity=0.320  Sum_probs=68.2

Q ss_pred             ECCEEEEECCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf             6141685268995775899999976986766989999999997304523899999999999986188289999998
Q gi|254780344|r   44 TIPEFTSLCPVTSQPDFAHMILDYIPKDWLIESKSLKLFMASFRNHHSFHEDCTIYIARRLVTILDPKWLRIGAYW  119 (154)
Q Consensus        44 ~~~EftslCpvtgqPD~a~i~I~y~~~~~~vEskSLklYL~Sfrn~~~fhE~~v~~I~~dL~~~~~P~~l~V~~~f  119 (154)
                      ..=.|.|+|.-.=+|=+|.+.|-|.|+.+++-...|.....-|-..---+|..+..|.+.|.+.++|.-+.|...=
T Consensus       100 ~~I~f~S~CEHHllPf~G~~hVaYiP~~~ViGLSKl~RiV~~~arRlQ~QERLT~qIA~al~~~l~p~gVaV~ieA  175 (220)
T 1wur_A          100 KGVEFYSMCEHHLLPFFGKVHIGYIPDGKILGLSKFARIVDMFARRLQVQERLAVQIAEAIQEVLEPQGVGVVVEG  175 (220)
T ss_dssp             EEEEEEEEETTTCCEEEEEEEEEEECSSEEECHHHHHHHHHHHHSSEECHHHHHHHHHHHHHHHHCCSEEEEEEEE
T ss_pred             CCEEEEEECCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf             1633677211036732007999992599710478999999999706488889999999999997497817999988


No 4  
>1is8_A GTP cyclohydrolase I; enzyme-regulatory protein complex, hydrolase/protein binding complex; HET: PHE; 2.70A {Rattus norvegicus} SCOP: d.96.1.1 PDB: 1is7_A* 1wpl_A* 1fb1_A
Probab=97.06  E-value=0.0054  Score=37.29  Aligned_cols=79  Identities=16%  Similarity=0.203  Sum_probs=69.7

Q ss_pred             EEEECCEEEEECCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf             9996141685268995775899999976986766989999999997304523899999999999986188289999998
Q gi|254780344|r   41 VRFTIPEFTSLCPVTSQPDFAHMILDYIPKDWLIESKSLKLFMASFRNHHSFHEDCTIYIARRLVTILDPKWLRIGAYW  119 (154)
Q Consensus        41 i~~~~~EftslCpvtgqPD~a~i~I~y~~~~~~vEskSLklYL~Sfrn~~~fhE~~v~~I~~dL~~~~~P~~l~V~~~f  119 (154)
                      +...-=+|.|+|.-.=.|=+|.+.|-|.|+++++-...|.....-|-..---+|..+..|++.|.+.++|+-+.|...-
T Consensus       110 Viv~dI~f~S~CEHHllPf~G~ahVaYiP~~~ViGLSKlaRiV~~~arRlQvQErLT~qIA~al~~~l~p~GVaV~ieA  188 (230)
T 1is8_A          110 VIVKDIDMFSMCEHHLVPFVGRVHIGYLPNKQVLGLSKLARIVEIYSRRLQVQERLTKQIAVAITEALQPAGVGVVIEA  188 (230)
T ss_dssp             EEEEEEEEEEEETTTCCEEEEEEEEEEECSEECCCHHHHHHHHHHHHSSEECHHHHHHHHHHHHHHHHCCSEEEEEEEE
T ss_pred             EEEECCEEEEECCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf             8984220444225443552028999998489525677899999999717578889999999999973487858999998


No 5  
>1a8r_A GTP cyclohydrolase I; purine hydrolysis, pterine synthesis; HET: GTP; 2.10A {Escherichia coli} SCOP: d.96.1.1 PDB: 1n3r_A* 1fbx_A 1gtp_A 1n3s_A* 1n3t_F* 1a9c_A*
Probab=96.90  E-value=0.0067  Score=36.74  Aligned_cols=79  Identities=22%  Similarity=0.187  Sum_probs=69.3

Q ss_pred             EEEECCEEEEECCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf             9996141685268995775899999976986766989999999997304523899999999999986188289999998
Q gi|254780344|r   41 VRFTIPEFTSLCPVTSQPDFAHMILDYIPKDWLIESKSLKLFMASFRNHHSFHEDCTIYIARRLVTILDPKWLRIGAYW  119 (154)
Q Consensus        41 i~~~~~EftslCpvtgqPD~a~i~I~y~~~~~~vEskSLklYL~Sfrn~~~fhE~~v~~I~~dL~~~~~P~~l~V~~~f  119 (154)
                      +...-=.|.|+|.-.=+|=+|.+.|-|.|+++++-..-|.....-|--.---+|..+..|++.|.+.++|+-+.|...=
T Consensus        99 Viv~~I~f~S~CEHHllPf~G~~hIaYiP~~~ViGLSKl~Riv~~~arRlQvQERLT~qIa~al~~~l~~~GV~V~ieA  177 (221)
T 1a8r_A           99 VTVRDITLTSTCESHFVTIDGKATVAYIPKDSVIGLSKINRIVQFFAQRPQVQERLTQQILIALQTLLGTNNVAVSIDA  177 (221)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEEEEEEECCSSEEECHHHHHHHHHHHHSSEECHHHHHHHHHHHHHHHHTCSCEEEEEEE
T ss_pred             EEECCCEEEEEHHCCCCCCCCEEEEEEECCCCEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf             8961623776210045630317999997189233415899999999837354899999999999996387957999988


No 6  
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, transcription-coupled DNA repair, ATP-binding, DNA damage, DNA repair; 1.95A {Escherichia coli} PDB: 2b2n_A*
Probab=31.44  E-value=11  Score=17.36  Aligned_cols=14  Identities=14%  Similarity=0.221  Sum_probs=6.8

Q ss_pred             CCCCCCCCCCCCCC
Q ss_conf             99997652688888
Q gi|254780344|r  134 SAPPEGVFLPNQDV  147 (154)
Q Consensus       134 ~~~p~~~~~p~~~~  147 (154)
                      +...+|+.+|+..+
T Consensus       428 g~L~~GF~l~~~kl  441 (483)
T 3hjh_A          428 GAAEHGFVDTVRNL  441 (483)
T ss_dssp             SCCCSCEEETTTTE
T ss_pred             ECHHCCCCCCCCCE
T ss_conf             71550864798999


No 7  
>1j6r_A Methionine synthase; structural genomics, TM0269, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.30A {Thermotoga maritima} SCOP: d.173.1.2
Probab=20.44  E-value=42  Score=13.91  Aligned_cols=15  Identities=13%  Similarity=-0.017  Sum_probs=7.0

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             389999999999998
Q gi|254780344|r   92 FHEDCTIYIARRLVT  106 (154)
Q Consensus        92 fhE~~v~~I~~dL~~  106 (154)
                      .-|++++.+-..+.+
T Consensus       135 ~~E~~~d~~~~~ir~  149 (214)
T 1j6r_A          135 MVEYALRKVDAELRM  149 (214)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             999999999999999


No 8  
>3o1k_A Dihydroneopterin aldolase FOLB, putative; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Vibrio cholerae o1 biovar el tor}
Probab=17.29  E-value=49  Score=13.48  Aligned_cols=65  Identities=14%  Similarity=0.109  Sum_probs=49.3

Q ss_pred             CCCCCEEEEEEEEECCC--------CCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf             99577589999997698--------6766989999999997304523--89999999999998618828999999
Q gi|254780344|r   54 VTSQPDFAHMILDYIPK--------DWLIESKSLKLFMASFRNHHSF--HEDCTIYIARRLVTILDPKWLRIGAY  118 (154)
Q Consensus        54 vtgqPD~a~i~I~y~~~--------~~~vEskSLklYL~Sfrn~~~f--hE~~v~~I~~dL~~~~~P~~l~V~~~  118 (154)
                      ..+||-.-++.+.+...        ...++-..+-.-+..+-..+.|  -|.+++.|.+.+.+.+...+++|...
T Consensus        38 ~~~Q~v~idv~l~~~~~~a~~~D~l~~tidY~~v~~~i~~~~~~~~~~LlE~la~~i~~~il~~~~v~~v~v~i~  112 (132)
T 3o1k_A           38 QIKQKLVLDLEMAHDNRAAGKSDDVADALDYAQVSQAVLEHIEQGRFLLVERVAEEVAELIMTRFAVPWLRIRLT  112 (132)
T ss_dssp             GSCEEEEEEEEEECCCHHHHHHCCGGGSCCHHHHHHHHHHHHHTCEESCHHHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred             CCCCEEEEEEEEECCCHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf             679889999999537323145677233627999999999998668837399999999999985179627999999


No 9  
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=16.54  E-value=51  Score=13.37  Aligned_cols=46  Identities=9%  Similarity=0.198  Sum_probs=27.4

Q ss_pred             CCCCCCCCCCCCHHHHHCCCCCCCCCCEEEEEECC------EEEEECCCCCC
Q ss_conf             37655577788986820013777886479999614------16852689957
Q gi|254780344|r   12 LGGKAKPCDDPNEALLERIPSQNKNLNYVVRFTIP------EFTSLCPVTSQ   57 (154)
Q Consensus        12 LG~~t~~p~~p~~~lLe~i~~~~~~~~~~i~~~~~------EftslCpvtgq   57 (154)
                      .+.+-.++...++.+|-.-+--.++..+.+.|+++      ++.+.|.+-|-
T Consensus        66 ~~~~~~~~~~~~~~via~t~ll~pGes~~i~f~~p~~~~~G~Y~f~Ct~PGH  117 (129)
T 2ccw_A           66 AGLAQDYVKAGDTRVIAHTKVIGGGESDSVTFDVSKIAAGENYAYFCSFPGH  117 (129)
T ss_dssp             HCGGGTTSCTTCTTEEEECCCBCTTCEEEEEEEGGGSCTTCCEEEECCSTTG
T ss_pred             HCCCCCCCCCCCHHHEEEECCCCCCCEEEEEEEECCCCCCCCEEEEECCCCH
T ss_conf             3304688899973022342022899558999981477899768999788994


No 10 
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A
Probab=14.47  E-value=16  Score=16.45  Aligned_cols=46  Identities=20%  Similarity=0.323  Sum_probs=0.0

Q ss_pred             CCEEEEECCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf             14168526899577589999997698676698999999999730452389
Q gi|254780344|r   45 IPEFTSLCPVTSQPDFAHMILDYIPKDWLIESKSLKLFMASFRNHHSFHE   94 (154)
Q Consensus        45 ~~EftslCpvtgqPD~a~i~I~y~~~~~~vEskSLklYL~Sfrn~~~fhE   94 (154)
                      +.|++-||.+    +.|.+.+...+.....-+.++..-+..|.++...||
T Consensus        31 A~ELs~Lc~~----~v~liv~s~~gk~~~~~s~~~~~il~ry~~~~~p~e   76 (77)
T 1egw_A           31 AYELSVLCDC----EIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHE   76 (77)
T ss_dssp             HHHHHHHTTC----EEEEEEECTTCCEEEEESSCHHHHHHHHHHC-----
T ss_pred             HHHHHHHCCC----CEEEEEECCCCCEEEEECCCHHHHHHHHHHCCCCCC
T ss_conf             9999753188----189999869998847419999999999983487678


Done!