Query gi|254780344|ref|YP_003064757.1| 7-cyano-7-deazaguanine reductase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 154 No_of_seqs 132 out of 756 Neff 4.8 Searched_HMMs 23785 Date Mon May 30 09:09:08 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780344.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3bp1_A NADPH-dependent 7-cyano 100.0 2.5E-41 1.4E-45 268.0 11.5 101 43-145 188-290 (290) 2 3bp1_A NADPH-dependent 7-cyano 99.7 7E-17 2.9E-21 120.9 10.4 105 6-111 16-134 (290) 3 1wur_A GTP cyclohydrolase I; b 97.2 0.0055 2.3E-07 37.3 11.0 76 44-119 100-175 (220) 4 1is8_A GTP cyclohydrolase I; e 97.1 0.0054 2.3E-07 37.3 9.7 79 41-119 110-188 (230) 5 1a8r_A GTP cyclohydrolase I; p 96.9 0.0067 2.8E-07 36.7 9.0 79 41-119 99-177 (221) 6 3hjh_A Transcription-repair-co 31.4 11 0.00047 17.4 0.7 14 134-147 428-441 (483) 7 1j6r_A Methionine synthase; st 20.4 42 0.0018 13.9 2.4 15 92-106 135-149 (214) 8 3o1k_A Dihydroneopterin aldola 17.3 49 0.0021 13.5 7.3 65 54-118 38-112 (132) 9 2ccw_A Azurin II, AZN-2; elect 16.5 51 0.0022 13.4 3.6 46 12-57 66-117 (129) 10 1egw_A MADS box transcription 14.5 16 0.00067 16.4 -1.4 46 45-94 31-76 (77) No 1 >3bp1_A NADPH-dependent 7-cyano-7-deazaguanine reductase; alpha-beta structure, structural genomics, PSI-2; HET: MSE GUN; 1.53A {Vibrio cholerae o1 biovar eltor str} Probab=100.00 E-value=2.5e-41 Score=267.97 Aligned_cols=101 Identities=26% Similarity=0.476 Sum_probs=89.6 Q ss_pred EECCEEEEECCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECC Q ss_conf 96141685268995775899999976986766989999999997304523899999999999986188289999998517 Q gi|254780344|r 43 FTIPEFTSLCPVTSQPDFAHMILDYIPKDWLIESKSLKLFMASFRNHHSFHEDCTIYIARRLVTILDPKWLRIGAYWYPR 122 (154) Q Consensus 43 ~~~~EftslCpvtgqPD~a~i~I~y~~~~~~vEskSLklYL~Sfrn~~~fhE~~v~~I~~dL~~~~~P~~l~V~~~f~~R 122 (154) +.+..|||+||||||||||+|+|.|.+.+ ++.+|||+||.|||||++|||+|+|+||.||+++|+|.||+|+|+|+|| T Consensus 188 l~S~lfrS~CPvT~QPD~a~i~I~y~~~~--~~~~sL~~Yl~SfR~~~~FhE~~ve~If~dl~~~~~p~~l~V~~~~~rR 265 (290) T 3bp1_A 188 LHSHLLKSNCLITNQPDWGSVEIAYHGAK--MNREALLRYLVSFREHNEFHEQCVERIFTDIMRYCQPQSLTVYARYTRR 265 (290) T ss_dssp EEEEEEEEC------CEEEEEEEEEEEEE--ECHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHHHHCCSEEEEEEEECCB T ss_pred EEECCEECCCCCCCCCCEEEEEEEECCCC--CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECC T ss_conf 98347132698989986069999981752--4899999999999722757999999999999985497589999998667 Q ss_pred CCCCCCEEEECCCC--CCCCCCCCC Q ss_conf 98313504007999--976526888 Q gi|254780344|r 123 GGIPIDIFWQTSAP--PEGVFLPNQ 145 (154) Q Consensus 123 GGI~i~~~~~~~~~--p~~~~~p~~ 145 (154) |||||||+|.+... +.+..+.+| T Consensus 266 GGidInp~Rs~~~~~~~~~~Rl~RQ 290 (290) T 3bp1_A 266 GGLDINPFRSSHQSAPNHNQRMARQ 290 (290) T ss_dssp TTEEEEEEEESSCCCCSCCCCBTTC T ss_pred CCCCCCEECCCCCCCCCCCCCCCCC T ss_conf 8831765745898899876421269 No 2 >3bp1_A NADPH-dependent 7-cyano-7-deazaguanine reductase; alpha-beta structure, structural genomics, PSI-2; HET: MSE GUN; 1.53A {Vibrio cholerae o1 biovar eltor str} Probab=99.70 E-value=7e-17 Score=120.88 Aligned_cols=105 Identities=21% Similarity=0.263 Sum_probs=91.4 Q ss_pred HHCCH--HCCCCCCCCCCCCHHHHHCCCCCCCCC----------CEEEEEECCEEEEECCCCCCCEEEEEEEEE-CCCCC Q ss_conf 21201--037655577788986820013777886----------479999614168526899577589999997-69867 Q gi|254780344|r 6 LNGLS--ILGGKAKPCDDPNEALLERIPSQNKNL----------NYVVRFTIPEFTSLCPVTSQPDFAHMILDY-IPKDW 72 (154) Q Consensus 6 ~~~lt--~LG~~t~~p~~p~~~lLe~i~~~~~~~----------~~~i~~~~~EftslCpvtgqPD~a~i~I~y-~~~~~ 72 (154) .+.+. .||+++.||+.|+|++|.+|||...+. .+.+.|++|||+||. ..|+|..|.++|.+ +.++. T Consensus 16 ~~~~~~~~LGk~~~yp~~YdP~lL~pI~R~~~R~~l~i~~~l~f~G~DiWnaYElSWLn-~~G~P~v~i~~i~iP~~S~~ 94 (290) T 3bp1_A 16 AKELASLTLGKKTEYANQYDPSLLQPVPRSLNRNDLHLSATLPFQGCDIWTLYELSWLN-QKGLPQVAIGEVSIPATSAN 94 (290) T ss_dssp --------------CCCCCCGGGCCEEEHHHHHGGGTCCSSCSCEEEEEEEEEEEEEEC-TTSCEEEEEEEEEEETTSSE T ss_pred HHHHHCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHCCCCCCCCCCCEEECHHHHHHHCC-CCCCCEEEEEEEEEECCCCC T ss_conf 46662489999878877788578123665010644499867984655733411124317-99984799999999479985 Q ss_pred CCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHCCCC Q ss_conf 669899999999973045-238999999999999861882 Q gi|254780344|r 73 LIESKSLKLFMASFRNHH-SFHEDCTIYIARRLVTILDPK 111 (154) Q Consensus 73 ~vEskSLklYL~Sfrn~~-~fhE~~v~~I~~dL~~~~~P~ 111 (154) +|||||||||||||+++. ...+++.+.|..||.++++-. T Consensus 95 iVESKSlKLYLNSfn~~~F~s~~~v~~~I~~DLs~~~~~~ 134 (290) T 3bp1_A 95 LIESKSFKLYLNSYNQTRFASWDEVQTRLVHDLSACAGET 134 (290) T ss_dssp EECHHHHHHHHHTTTTCBCSCHHHHHHHHHHHHHHHHTSC T ss_pred CHHHHHHHHHHHHHHCEECCCHHHHHHHHHHHHHHHHCCC T ss_conf 1103678888777541214889999999999999985996 No 3 >1wur_A GTP cyclohydrolase I; beta barrel, protein-inhibitor complex, pteridine, tetrahydrobiopterin, structural genomics; HET: 8DG; 1.82A {Thermus thermophilus} SCOP: d.96.1.1 PDB: 1wm9_A* 1wuq_A* Probab=97.22 E-value=0.0055 Score=37.28 Aligned_cols=76 Identities=20% Similarity=0.320 Sum_probs=68.2 Q ss_pred ECCEEEEECCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEE Q ss_conf 6141685268995775899999976986766989999999997304523899999999999986188289999998 Q gi|254780344|r 44 TIPEFTSLCPVTSQPDFAHMILDYIPKDWLIESKSLKLFMASFRNHHSFHEDCTIYIARRLVTILDPKWLRIGAYW 119 (154) Q Consensus 44 ~~~EftslCpvtgqPD~a~i~I~y~~~~~~vEskSLklYL~Sfrn~~~fhE~~v~~I~~dL~~~~~P~~l~V~~~f 119 (154) ..=.|.|+|.-.=+|=+|.+.|-|.|+.+++-...|.....-|-..---+|..+..|.+.|.+.++|.-+.|...= T Consensus 100 ~~I~f~S~CEHHllPf~G~~hVaYiP~~~ViGLSKl~RiV~~~arRlQ~QERLT~qIA~al~~~l~p~gVaV~ieA 175 (220) T 1wur_A 100 KGVEFYSMCEHHLLPFFGKVHIGYIPDGKILGLSKFARIVDMFARRLQVQERLAVQIAEAIQEVLEPQGVGVVVEG 175 (220) T ss_dssp EEEEEEEEETTTCCEEEEEEEEEEECSSEEECHHHHHHHHHHHHSSEECHHHHHHHHHHHHHHHHCCSEEEEEEEE T ss_pred CCEEEEEECCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEE T ss_conf 1633677211036732007999992599710478999999999706488889999999999997497817999988 No 4 >1is8_A GTP cyclohydrolase I; enzyme-regulatory protein complex, hydrolase/protein binding complex; HET: PHE; 2.70A {Rattus norvegicus} SCOP: d.96.1.1 PDB: 1is7_A* 1wpl_A* 1fb1_A Probab=97.06 E-value=0.0054 Score=37.29 Aligned_cols=79 Identities=16% Similarity=0.203 Sum_probs=69.7 Q ss_pred EEEECCEEEEECCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEE Q ss_conf 9996141685268995775899999976986766989999999997304523899999999999986188289999998 Q gi|254780344|r 41 VRFTIPEFTSLCPVTSQPDFAHMILDYIPKDWLIESKSLKLFMASFRNHHSFHEDCTIYIARRLVTILDPKWLRIGAYW 119 (154) Q Consensus 41 i~~~~~EftslCpvtgqPD~a~i~I~y~~~~~~vEskSLklYL~Sfrn~~~fhE~~v~~I~~dL~~~~~P~~l~V~~~f 119 (154) +...-=+|.|+|.-.=.|=+|.+.|-|.|+++++-...|.....-|-..---+|..+..|++.|.+.++|+-+.|...- T Consensus 110 Viv~dI~f~S~CEHHllPf~G~ahVaYiP~~~ViGLSKlaRiV~~~arRlQvQErLT~qIA~al~~~l~p~GVaV~ieA 188 (230) T 1is8_A 110 VIVKDIDMFSMCEHHLVPFVGRVHIGYLPNKQVLGLSKLARIVEIYSRRLQVQERLTKQIAVAITEALQPAGVGVVIEA 188 (230) T ss_dssp EEEEEEEEEEEETTTCCEEEEEEEEEEECSEECCCHHHHHHHHHHHHSSEECHHHHHHHHHHHHHHHHCCSEEEEEEEE T ss_pred EEEECCEEEEECCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEE T ss_conf 8984220444225443552028999998489525677899999999717578889999999999973487858999998 No 5 >1a8r_A GTP cyclohydrolase I; purine hydrolysis, pterine synthesis; HET: GTP; 2.10A {Escherichia coli} SCOP: d.96.1.1 PDB: 1n3r_A* 1fbx_A 1gtp_A 1n3s_A* 1n3t_F* 1a9c_A* Probab=96.90 E-value=0.0067 Score=36.74 Aligned_cols=79 Identities=22% Similarity=0.187 Sum_probs=69.3 Q ss_pred EEEECCEEEEECCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEE Q ss_conf 9996141685268995775899999976986766989999999997304523899999999999986188289999998 Q gi|254780344|r 41 VRFTIPEFTSLCPVTSQPDFAHMILDYIPKDWLIESKSLKLFMASFRNHHSFHEDCTIYIARRLVTILDPKWLRIGAYW 119 (154) Q Consensus 41 i~~~~~EftslCpvtgqPD~a~i~I~y~~~~~~vEskSLklYL~Sfrn~~~fhE~~v~~I~~dL~~~~~P~~l~V~~~f 119 (154) +...-=.|.|+|.-.=+|=+|.+.|-|.|+++++-..-|.....-|--.---+|..+..|++.|.+.++|+-+.|...= T Consensus 99 Viv~~I~f~S~CEHHllPf~G~~hIaYiP~~~ViGLSKl~Riv~~~arRlQvQERLT~qIa~al~~~l~~~GV~V~ieA 177 (221) T 1a8r_A 99 VTVRDITLTSTCESHFVTIDGKATVAYIPKDSVIGLSKINRIVQFFAQRPQVQERLTQQILIALQTLLGTNNVAVSIDA 177 (221) T ss_dssp EEEEEEEEEEEETTTTEEEEEEEEEEECCSSEEECHHHHHHHHHHHHSSEECHHHHHHHHHHHHHHHHTCSCEEEEEEE T ss_pred EEECCCEEEEEHHCCCCCCCCEEEEEEECCCCEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEE T ss_conf 8961623776210045630317999997189233415899999999837354899999999999996387957999988 No 6 >3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, transcription-coupled DNA repair, ATP-binding, DNA damage, DNA repair; 1.95A {Escherichia coli} PDB: 2b2n_A* Probab=31.44 E-value=11 Score=17.36 Aligned_cols=14 Identities=14% Similarity=0.221 Sum_probs=6.8 Q ss_pred CCCCCCCCCCCCCC Q ss_conf 99997652688888 Q gi|254780344|r 134 SAPPEGVFLPNQDV 147 (154) Q Consensus 134 ~~~p~~~~~p~~~~ 147 (154) +...+|+.+|+..+ T Consensus 428 g~L~~GF~l~~~kl 441 (483) T 3hjh_A 428 GAAEHGFVDTVRNL 441 (483) T ss_dssp SCCCSCEEETTTTE T ss_pred ECHHCCCCCCCCCE T ss_conf 71550864798999 No 7 >1j6r_A Methionine synthase; structural genomics, TM0269, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.30A {Thermotoga maritima} SCOP: d.173.1.2 Probab=20.44 E-value=42 Score=13.91 Aligned_cols=15 Identities=13% Similarity=-0.017 Sum_probs=7.0 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 389999999999998 Q gi|254780344|r 92 FHEDCTIYIARRLVT 106 (154) Q Consensus 92 fhE~~v~~I~~dL~~ 106 (154) .-|++++.+-..+.+ T Consensus 135 ~~E~~~d~~~~~ir~ 149 (214) T 1j6r_A 135 MVEYALRKVDAELRM 149 (214) T ss_dssp HHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHH T ss_conf 999999999999999 No 8 >3o1k_A Dihydroneopterin aldolase FOLB, putative; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Vibrio cholerae o1 biovar el tor} Probab=17.29 E-value=49 Score=13.48 Aligned_cols=65 Identities=14% Similarity=0.109 Sum_probs=49.3 Q ss_pred CCCCCEEEEEEEEECCC--------CCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHCCCCEEEEEEE Q ss_conf 99577589999997698--------6766989999999997304523--89999999999998618828999999 Q gi|254780344|r 54 VTSQPDFAHMILDYIPK--------DWLIESKSLKLFMASFRNHHSF--HEDCTIYIARRLVTILDPKWLRIGAY 118 (154) Q Consensus 54 vtgqPD~a~i~I~y~~~--------~~~vEskSLklYL~Sfrn~~~f--hE~~v~~I~~dL~~~~~P~~l~V~~~ 118 (154) ..+||-.-++.+.+... ...++-..+-.-+..+-..+.| -|.+++.|.+.+.+.+...+++|... T Consensus 38 ~~~Q~v~idv~l~~~~~~a~~~D~l~~tidY~~v~~~i~~~~~~~~~~LlE~la~~i~~~il~~~~v~~v~v~i~ 112 (132) T 3o1k_A 38 QIKQKLVLDLEMAHDNRAAGKSDDVADALDYAQVSQAVLEHIEQGRFLLVERVAEEVAELIMTRFAVPWLRIRLT 112 (132) T ss_dssp GSCEEEEEEEEEECCCHHHHHHCCGGGSCCHHHHHHHHHHHHHTCEESCHHHHHHHHHHHHHHHHCCSEEEEEEE T ss_pred CCCCEEEEEEEEECCCHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEE T ss_conf 679889999999537323145677233627999999999998668837399999999999985179627999999 No 9 >2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A Probab=16.54 E-value=51 Score=13.37 Aligned_cols=46 Identities=9% Similarity=0.198 Sum_probs=27.4 Q ss_pred CCCCCCCCCCCCHHHHHCCCCCCCCCCEEEEEECC------EEEEECCCCCC Q ss_conf 37655577788986820013777886479999614------16852689957 Q gi|254780344|r 12 LGGKAKPCDDPNEALLERIPSQNKNLNYVVRFTIP------EFTSLCPVTSQ 57 (154) Q Consensus 12 LG~~t~~p~~p~~~lLe~i~~~~~~~~~~i~~~~~------EftslCpvtgq 57 (154) .+.+-.++...++.+|-.-+--.++..+.+.|+++ ++.+.|.+-|- T Consensus 66 ~~~~~~~~~~~~~~via~t~ll~pGes~~i~f~~p~~~~~G~Y~f~Ct~PGH 117 (129) T 2ccw_A 66 AGLAQDYVKAGDTRVIAHTKVIGGGESDSVTFDVSKIAAGENYAYFCSFPGH 117 (129) T ss_dssp HCGGGTTSCTTCTTEEEECCCBCTTCEEEEEEEGGGSCTTCCEEEECCSTTG T ss_pred HCCCCCCCCCCCHHHEEEECCCCCCCEEEEEEEECCCCCCCCEEEEECCCCH T ss_conf 3304688899973022342022899558999981477899768999788994 No 10 >1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A Probab=14.47 E-value=16 Score=16.45 Aligned_cols=46 Identities=20% Similarity=0.323 Sum_probs=0.0 Q ss_pred CCEEEEECCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHH Q ss_conf 14168526899577589999997698676698999999999730452389 Q gi|254780344|r 45 IPEFTSLCPVTSQPDFAHMILDYIPKDWLIESKSLKLFMASFRNHHSFHE 94 (154) Q Consensus 45 ~~EftslCpvtgqPD~a~i~I~y~~~~~~vEskSLklYL~Sfrn~~~fhE 94 (154) +.|++-||.+ +.|.+.+...+.....-+.++..-+..|.++...|| T Consensus 31 A~ELs~Lc~~----~v~liv~s~~gk~~~~~s~~~~~il~ry~~~~~p~e 76 (77) T 1egw_A 31 AYELSVLCDC----EIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHE 76 (77) T ss_dssp HHHHHHHTTC----EEEEEEECTTCCEEEEESSCHHHHHHHHHHC----- T ss_pred HHHHHHHCCC----CEEEEEECCCCCEEEEECCCHHHHHHHHHHCCCCCC T ss_conf 9999753188----189999869998847419999999999983487678 Done!