RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780344|ref|YP_003064757.1| 7-cyano-7-deazaguanine
reductase [Candidatus Liberibacter asiaticus str. psy62]
(154 letters)
>gnl|CDD|183924 PRK13258, PRK13258, 7-cyano-7-deazaguanine reductase; Provisional.
Length = 115
Score = 207 bits (529), Expect = 1e-54
Identities = 62/115 (53%), Positives = 79/115 (68%)
Query: 24 EALLERIPSQNKNLNYVVRFTIPEFTSLCPVTSQPDFAHMILDYIPKDWLIESKSLKLFM 83
EA+LE P+ + +Y +R T+PEFTSLCP T QPDFA +++DYIP +E KSLKL++
Sbjct: 1 EAVLETFPNPHPGRDYTIRITLPEFTSLCPKTGQPDFATIVIDYIPDKKCVELKSLKLYL 60
Query: 84 ASFRNHHSFHEDCTIYIARRLVTILDPKWLRIGAYWYPRGGIPIDIFWQTSAPPE 138
SFRNH FHEDCT I LV +LDP+WLR+G + PRGGI D+F PP
Sbjct: 61 FSFRNHGIFHEDCTNRILDDLVALLDPRWLRVGGDFNPRGGIHTDVFANYGKPPT 115
>gnl|CDD|132183 TIGR03139, QueF-II, 7-cyano-7-deazaguanine reductase. The
enzymatic step represents the first point at which the
biosynthesis of queuosine in bacteria and eukaryotes is
distinguished from the biosynthesis of archaeosine in
archaea.
Length = 115
Score = 161 bits (409), Expect = 8e-41
Identities = 52/109 (47%), Positives = 71/109 (65%)
Query: 22 PNEALLERIPSQNKNLNYVVRFTIPEFTSLCPVTSQPDFAHMILDYIPKDWLIESKSLKL 81
P++ LLE P+ + +Y + F PEFTSLCP T QPDFA +++ YIP +E KSLKL
Sbjct: 1 PSKELLEAFPNPYPDRDYTIEFVCPEFTSLCPKTGQPDFATIVISYIPDQRCVELKSLKL 60
Query: 82 FMASFRNHHSFHEDCTIYIARRLVTILDPKWLRIGAYWYPRGGIPIDIF 130
++ SFRNH FHE+ T I LV +L P++LR+ + PRGGI +F
Sbjct: 61 YLFSFRNHGIFHENVTNTILDDLVKLLQPRYLRVIGDFNPRGGIKTIVF 109
>gnl|CDD|163150 TIGR03138, QueF, 7-cyano-7-deazaguanine reductase. The enzymatic
step represents the first point at which the
biosynthesis of queuosine in bacteria and eukaryotes is
distinguished from the biosynthesis of archaeosine in
archaea.
Length = 275
Score = 56.9 bits (138), Expect = 2e-09
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Query: 50 SLCPVTSQPDFAHMILDYIPKDWLIESKSLKLFMASFRNHHSFHEDCTIYIARRLVTILD 109
S CPVT QPD+ + + Y K I+ ++L ++ SFR H+ FHE C I ++
Sbjct: 180 SNCPVTGQPDWGSVQIRYRGKK--IDREALLRYLISFRQHNEFHEQCVERIFADIMRFCQ 237
Query: 110 PKWLRIGAYWYPRGGIPIDIFWQT--SAPPEGVFLPNQ 145
P+ L + A + RGG+ I+ + +A P+ + L Q
Sbjct: 238 PEKLTVYARYTRRGGLDINPYRSNDEAATPDNIRLARQ 275
Score = 30.3 bits (69), Expect = 0.20
Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 73 LIESKSLKLFMASFRNHHSF 92
LIESKS KL++ SF N F
Sbjct: 80 LIESKSFKLYLNSF-NQTRF 98
>gnl|CDD|183317 PRK11792, queF, 7-cyano-7-deazaguanine reductase; Provisional.
Length = 273
Score = 45.5 bits (109), Expect = 5e-06
Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 16/86 (18%)
Query: 50 SLCPVTSQPDFAHMILDYI-PKDWLIESKSLKLFMASFRNHHSFHEDC--TIY--IARRL 104
S C VT QPD+ + + Y PK I+ + L ++ SFR H+ FHE C I+ I R
Sbjct: 178 SNCLVTGQPDWGSVQIRYRGPK---IDREGLLRYLVSFRQHNEFHEQCVERIFTDIMRF- 233
Query: 105 VTILDPKWLRIGAYWYP-RGGIPIDI 129
P+ L + A Y RGG +DI
Sbjct: 234 ---CQPEKLTVYA-RYTRRGG--LDI 253
Score = 30.1 bits (69), Expect = 0.25
Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 73 LIESKSLKLFMASFRNHHSF 92
LIESKS KL++ SF N F
Sbjct: 79 LIESKSFKLYLNSF-NQTRF 97
>gnl|CDD|129173 TIGR00063, folE, GTP cyclohydrolase I. GTP cyclohydrolase I (EC
3.5.4.16) catalyzes the biosynthesis of formic acid and
dihydroneopterin triphosphate from GTP. This reaction is
the first step in the biosynthesis of tetrahydrofolate
in prokaryotes, of tetrahydrobiopterin in vertebrates,
and of pteridine-containing pigments in insects.
Length = 180
Score = 36.3 bits (84), Expect = 0.004
Identities = 20/64 (31%), Positives = 25/64 (39%)
Query: 47 EFTSLCPVTSQPDFAHMILDYIPKDWLIESKSLKLFMASFRNHHSFHEDCTIYIARRLVT 106
FTS C P + YIPKD +I + + F E T IA L
Sbjct: 66 TFTSTCEHHLVPFDGKAHVAYIPKDKVIGLSKIARIVEFFARRPQVQERLTQQIAEALQE 125
Query: 107 ILDP 110
IL+P
Sbjct: 126 ILEP 129
>gnl|CDD|116302 pfam07688, KaiA, KaiA domain. The cyanobacterial clock proteins
KaiA and KaiB are proposed as regulators of the
circadian rhythm in cyanobacteria. The overall fold of
the KaiA monomer is that of a four-helix bundle, which
forms a dimer in the known structure.
Length = 283
Score = 27.1 bits (60), Expect = 1.8
Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 5/49 (10%)
Query: 16 AKPCDDPNE-----ALLERIPSQNKNLNYVVRFTIPEFTSLCPVTSQPD 59
AKP D A + SQ L V I F L P+ + P+
Sbjct: 83 AKPTDPHPTIVYHNAEIHLPESQLSQLPTQVDRAIAHFLHLGPICTLPN 131
>gnl|CDD|179372 PRK02114, PRK02114, formylmethanofuran--tetrahydromethanopterin
formyltransferase; Provisional.
Length = 297
Score = 25.9 bits (58), Expect = 4.4
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 91 SFHEDCTIYIARRLVTILDPKWLRIGAY 118
+F E + + R L+T KW +I A
Sbjct: 11 TFAEAFPMKVTRVLITAATKKWAKIAAT 38
>gnl|CDD|180000 PRK05298, PRK05298, excinuclease ABC subunit B; Provisional.
Length = 652
Score = 25.8 bits (58), Expect = 5.3
Identities = 8/16 (50%), Positives = 11/16 (68%), Gaps = 3/16 (18%)
Query: 64 ILDYIPKDWLI---ES 76
+LDY P D+L+ ES
Sbjct: 325 LLDYFPDDFLLFIDES 340
>gnl|CDD|152431 pfam11996, DUF3491, Protein of unknown function (DUF3491). This
family of proteins is functionally uncharacterized. This
protein is found in bacteria. Proteins in this family
are typically between 286 to 3225 amino acids in length.
This protein is found associated with pfam04488. This
protein is found associated with pfam04488.
Length = 934
Score = 25.5 bits (56), Expect = 5.5
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 121 PRGGIPIDIFWQTSAPPEG--VFLPNQDVP 148
PR +P+ + W+ PE V + QD+P
Sbjct: 402 PRYALPLTVSWKEETLPEQTRVEINPQDIP 431
>gnl|CDD|162699 TIGR02094, more_P_ylases, alpha-glucan phosphorylases. This family
consists of known phosphorylases, and homologs believed
to share the function of using inorganic phosphate to
cleave an alpha 1,4 linkage between the terminal glucose
residue and the rest of the polymer (maltodextrin,
glycogen, etc.). The name of the glucose storage polymer
substrate, and therefore the name of this enzyme,
depends on the chain lengths and branching patterns. A
number of the members of this family have been shown to
operate on small maltodextrins, as may be obtained by
utilization of exogenous sources. This family represents
a distinct clade from the related family modeled by
TIGR02093/PF00343.
Length = 601
Score = 25.4 bits (56), Expect = 6.3
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 83 MASFRNHHSFHEDCTIYIARRLVTILDPKWL 113
FR F E+ I +AR LV+ +D WL
Sbjct: 453 RPEFRGRIVFLENYDINLARYLVSGVD-VWL 482
Score = 25.4 bits (56), Expect = 6.6
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 11 ILGGKAKPCDDPNEALLERI 30
+ GKA P D + +++RI
Sbjct: 428 VFAGKAHPADGEGKEIIQRI 447
>gnl|CDD|152338 pfam11902, DUF3422, Protein of unknown function (DUF3422). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria, archaea and
eukaryotes. Proteins in this family are typically
between 426 to 444 amino acids in length.
Length = 419
Score = 25.2 bits (56), Expect = 6.7
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Query: 47 EFTSL---CPVTSQPDFAHMILDYIPKDWL 73
EF++ P F L+ +P+DWL
Sbjct: 82 EFSTYTFFRPGPGDEPFDPPALELLPQDWL 111
>gnl|CDD|182474 PRK10456, PRK10456, arginine succinyltransferase; Provisional.
Length = 344
Score = 25.5 bits (56), Expect = 7.0
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 51 LCPVTSQPDFAHMILDYIPKDWLIESKSLKLFMASFRNHHS 91
LC + PD+ + + SKS +FMA+FR+ +
Sbjct: 122 LCTLFLDPDWRK------EGNGYLLSKSRFMFMAAFRDKFN 156
>gnl|CDD|183693 PRK12705, PRK12705, hypothetical protein; Provisional.
Length = 508
Score = 25.1 bits (55), Expect = 7.2
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
Query: 88 NHHSFHEDCTIYIARRLVTILD 109
+HH+ T+Y LV I D
Sbjct: 393 SHHNKVNPETVY--SVLVQIAD 412
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.323 0.141 0.461
Gapped
Lambda K H
0.267 0.0719 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,676,454
Number of extensions: 160890
Number of successful extensions: 286
Number of sequences better than 10.0: 1
Number of HSP's gapped: 284
Number of HSP's successfully gapped: 21
Length of query: 154
Length of database: 5,994,473
Length adjustment: 85
Effective length of query: 69
Effective length of database: 4,157,793
Effective search space: 286887717
Effective search space used: 286887717
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)