RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780344|ref|YP_003064757.1| 7-cyano-7-deazaguanine
reductase [Candidatus Liberibacter asiaticus str. psy62]
(154 letters)
>3bp1_A NADPH-dependent 7-cyano-7-deazaguanine reductase; alpha-beta
structure, structural genomics, PSI-2; HET: MSE GUN;
1.53A {Vibrio cholerae o1 biovar eltor str} (A:)
Length = 290
Score = 143 bits (363), Expect = 9e-36
Identities = 30/137 (21%), Positives = 52/137 (37%), Gaps = 15/137 (10%)
Query: 17 KPCDDPNEALLERIPSQNKNLNYVVRFTIPEFTSLCPVTSQPDFAHMILDYIPKDWLIES 76
+ ++ALL+ S C +T+QPD+ + + Y
Sbjct: 165 IANYEFDDALLQGAAQGE---EVSEVLHSHLLKSNCLITNQPDWGSVEIAYHGAKX--NR 219
Query: 77 KSLKLFMASFRNHHSFHEDCTIYIARRLVTILDPKWLRIGAYWYPRGGIPIDIFWQTSAP 136
++L ++ SFR H+ FHE C I + P+ L + A + RGG+ I+ F +
Sbjct: 220 EALLRYLVSFREHNEFHEQCVERIFTDIXRYCQPQSLTVYARYTRRGGLDINPFRSSHQS 279
Query: 137 PEGVFLPNQDVPQYRGR 153
P + R
Sbjct: 280 A----------PNHNQR 286
Score = 111 bits (279), Expect = 5e-26
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 16/136 (11%)
Query: 9 LSILGGKAKPCDDPNEALLERIPSQNKNLNYVVRFTIP----------EFTSLCPVTSQP 58
LG K + + + +LL+ +P + + T+P E + L P
Sbjct: 21 SLTLGKKTEYANQYDPSLLQPVPRSLNRNDLHLSATLPFQGCDIWTLYELSWLNQ-KGLP 79
Query: 59 DFAHMILDYIP-KDWLIESKSLKLFMASFRNH-HSFHEDCTIYIARRLVTILDPKWLRIG 116
A + LIESKS KL++ S+ + ++ + L +
Sbjct: 80 QVAIGEVSIPATSANLIESKSFKLYLNSYNQTRFASWDEVQTRLVHDLSACAGE---TVT 136
Query: 117 AYWYPRGGIPIDIFWQ 132
+
Sbjct: 137 VNVKSLNEYTAEPIVT 152
>1is8_A GTP cyclohydrolase I; enzyme-regulatory protein complex,
hydrolase/protein binding complex; HET: PHE; 2.70A
{Rattus norvegicus} (A:94-230)
Length = 137
Score = 97.6 bits (243), Expect = 6e-22
Identities = 18/133 (13%), Positives = 40/133 (30%), Gaps = 16/133 (12%)
Query: 23 NEALLERIPSQNKNLNYVVRFTIPEFTSLCPVTSQPDFAHMILDYIPKDWLIESKSLKLF 82
++ L + I +++ + +V + S+C P + + Y+P ++ L
Sbjct: 1 SDVLNDAIF--DEDHDEMVIVKDIDMFSMCEHHLVPFVGRVHIGYLPNKQVLGLSKLARI 58
Query: 83 MASFRNHHSFHEDCTIYIARRLVTILDPKWLRIGAYWY---------PRGGIPIDIFWQT 133
+ + E T IA + L P + + +
Sbjct: 59 VEIYSRRLQVQERLTKQIAVAITEALQPAGVGVVIEATHMCMVMRGVQKMNSKTVTSTML 118
Query: 134 SAPPEGVFLPNQD 146
GVF +
Sbjct: 119 -----GVFREDPK 126
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, class I;
coenzyme A, flavin adenine dinucleotide,
selenomethionine, FAD, flavoprotein; HET: COA FAD; 1.90A
{Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
(A:1-148,A:293-356)
Length = 212
Score = 30.9 bits (69), Expect = 0.074
Identities = 16/114 (14%), Positives = 33/114 (28%), Gaps = 14/114 (12%)
Query: 28 ERIPSQNKNLNYVVRFTIPEFTSLCPVTSQPDFAHMILDYIPKDWLIESKSLKLFMASFR 87
E L YV+ I L + +D + + + +
Sbjct: 71 EIYSYAQCGLPYVISGAIASTEKLIARNVKTFRDKYGIDAKVRHEVTKVDT---EKKIVY 127
Query: 88 NHHSFHEDCTIYIARRLVTILDPKWLRIGAYWYPRGGIPIDIFWQTSAPPEGVF 141
H+ +D + RL+ +G I ++ + QT+ V+
Sbjct: 128 AEHTKTKDVFEFSYDRLLIA---TRTN------HKGAIEVNAYXQTNVQ--DVY 170
>3ics_A Coenzyme A-disulfide reductase; pyridine
nucleotide-disulfide oxidoreductase class I, rhodanese,
flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A
{Bacillus anthracis} PDB: 3icr_A* 3ict_A*
(A:1-148,A:284-356)
Length = 221
Score = 27.8 bits (61), Expect = 0.65
Identities = 23/116 (19%), Positives = 41/116 (35%), Gaps = 9/116 (7%)
Query: 28 ERIPSQNKNLNYVVRFTIPEFTSLCPVTSQPDFAHMILDYIPKDW--LIESKSLKLFMAS 85
E I N L Y + I E L T + LD I + + + +
Sbjct: 71 EYISFANCGLPYYIGGVITERQKLLVQTVERXSKRFNLDIRVLSEVVKINKEEKTITIKN 130
Query: 86 FRNHHSFHEDCTIYIARRLVTILDPKWLRIGAYWYPRGGIPIDIFWQTSAPPEGVF 141
+ +++E + I + L +G RG I ++ +QTS P ++
Sbjct: 131 VTTNETYNEAYDVLILSPSS-LAKGAGLALG----VRGTIKVNEKFQTSDP--HIY 179
>1a8r_A GTP cyclohydrolase I; purine hydrolysis, pterine synthesis;
HET: GTP; 2.10A {Escherichia coli} (A:80-221)
Length = 142
Score = 27.9 bits (62), Expect = 0.72
Identities = 16/65 (24%), Positives = 21/65 (32%)
Query: 47 EFTSLCPVTSQPDFAHMILDYIPKDWLIESKSLKLFMASFRNHHSFHEDCTIYIARRLVT 106
TS C + YIPKD +I + + F E T I L T
Sbjct: 26 TLTSTCESHFVTIDGKATVAYIPKDSVIGLSKINRIVQFFAQRPQVQERLTQQILIALQT 85
Query: 107 ILDPK 111
+L
Sbjct: 86 LLGTN 90
>1wur_A GTP cyclohydrolase I; beta barrel, protein-inhibitor
complex, pteridine, tetrahydrobiopterin, structural
genomics; HET: 8DG; 1.82A {Thermus thermophilus}
(A:81-220)
Length = 140
Score = 27.5 bits (61), Expect = 0.93
Identities = 15/65 (23%), Positives = 26/65 (40%)
Query: 47 EFTSLCPVTSQPDFAHMILDYIPKDWLIESKSLKLFMASFRNHHSFHEDCTIYIARRLVT 106
EF S+C P F + + YIP ++ + F E + IA +
Sbjct: 23 EFYSMCEHHLLPFFGKVHIGYIPDGKILGLSKFARIVDMFARRLQVQERLAVQIAEAIQE 82
Query: 107 ILDPK 111
+L+P+
Sbjct: 83 VLEPQ 87
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin,
teicoplanin, ORF1, natural products, antibiotic; HET:
UDP; 1.15A {Amycolatopsis orientalis} PDB: 3h4i_A*
1pn3_A* 1pnv_A* (A:1-205,A:366-404)
Length = 244
Score = 26.9 bits (58), Expect = 1.1
Identities = 8/104 (7%), Positives = 15/104 (14%), Gaps = 2/104 (1%)
Query: 41 VRFTIPEFTSLCPVTSQPDFAHMILDYIPKDWLIESKSLKLFMASFRNHHSFHEDCTIYI 100
R +P + + + I
Sbjct: 31 ARMCLPPDYVERCAEVGVPMVPVGRAVRAGAREPGELPPGAAEVVTEVVAEWFDKVPAAI 90
Query: 101 ARR--LVTILDPKWLRIGAYWYPRGGIPIDIFWQTSAPPEGVFL 142
+VT + GIP +
Sbjct: 91 EGCDAVVTTGLLPAAVAVRSMAEKLGIPYRYTVLSPDHLPSEQS 134
>2zix_A Crossover junction endonuclease MUS81;
helix-hairpin-helix, DNA damage, DNA recombination, DNA
repair, hydrolase, magnesium, metal-binding, nucleus;
3.50A {Homo sapiens} (A:72-207)
Length = 136
Score = 26.4 bits (58), Expect = 1.6
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 66 DYIPKDWLIESKSLKLFMASFRNHHSFHE 94
+ D ++E K L +S + +
Sbjct: 9 GELVLDHIVERKRLDDLCSSIIDGRFREQ 37
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen,
FAD, disulphide oxidoreductase; HET: FAD; 1.90A
{Escherichia coli} (A:1-111,A:252-310)
Length = 170
Score = 26.1 bits (57), Expect = 2.1
Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 2/21 (9%)
Query: 121 PRGGIPIDIFWQTSAPPEGVF 141
G I ID +T+ GVF
Sbjct: 115 RMGEIIIDAKCETNVK--GVF 133
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD;
2.20A {Azotobacter vinelandii}
(A:1-34,A:114-150,A:297-347)
Length = 122
Score = 25.9 bits (57), Expect = 2.4
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 109 DPKWLR-IGAYWYPRGGIPIDIFWQTSAPPEGVF 141
+ L RG I +D + TS P GV+
Sbjct: 58 SSQVLDTENVILASRGFIYVDDYCATSVP--GVY 89
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD;
2.09A {Sulfolobus tokodaii}
(A:1-206,A:317-390,A:459-472)
Length = 294
Score = 25.7 bits (55), Expect = 2.9
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 113 LRIGAYWYPRGGIPIDIFWQTSAP 136
+ G GGI ++I +++
Sbjct: 197 FKAGTILADMGGIRVNIRGESNIV 220
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris} (b:)
Length = 295
Score = 25.6 bits (55), Expect = 3.1
Identities = 8/46 (17%), Positives = 15/46 (32%)
Query: 99 YIARRLVTILDPKWLRIGAYWYPRGGIPIDIFWQTSAPPEGVFLPN 144
+ RL+ + DP+ +P T +P V +
Sbjct: 116 FREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAI 161
>1hqm_D DNA-directed RNA polymerase; transferase, transcription,
3D- structure; 3.30A {Thermus aquaticus} (D:135-193)
Length = 59
Score = 25.4 bits (55), Expect = 3.7
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 21 DPNEALLERIPSQNKNL 37
DP A+L+ +P + + L
Sbjct: 2 DPKGAVLDGVPVEKRQL 18
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS,
oxidoreductase, structural genomics, PSI, protein
structure initiative; HET: FAD NAP; 3.00A {Mycobacterium
tuberculosis} (A:1-122,A:268-335)
Length = 190
Score = 25.3 bits (54), Expect = 3.7
Identities = 13/76 (17%), Positives = 23/76 (30%), Gaps = 2/76 (2%)
Query: 66 DYIPKDWLIESKSLKLFMASFRNHHSFHEDCTIYIARRLVTILDPKWLRIGAYWYPRGGI 125
+ I L++ + E +++ + V D + R A +
Sbjct: 66 NGITGPELMDEMREQALRFGADLRMEDVESVSLHGPLKSVVTADGQTHRARAVILAMYVL 125
Query: 126 PIDIFWQTSAPPEGVF 141
TS P GVF
Sbjct: 126 VQGRTTSTSLP--GVF 139
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET:
FAD; 2.00A {Escherichia coli} (A:1-112,A:265-320)
Length = 168
Score = 25.3 bits (54), Expect = 3.8
Identities = 15/107 (14%), Positives = 27/107 (25%), Gaps = 3/107 (2%)
Query: 35 KNLNYVVRFTIPEFTSLCPVTSQPDFAHMILDYIPKDWLIESKSLKLFMASFRNHHSFHE 94
NL V+ T E T++ + + + L+E
Sbjct: 27 ANLQPVL-ITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHIN 85
Query: 95 DCTIYIARRLVTILDPKWLRIGAYWYPRGGIPIDIFWQTSAPPEGVF 141
+ + + ++ QTS P GVF
Sbjct: 86 KVDLQNRPFRLNGDNGEYTCDALIIATVQSGIHGNATQTSIP--GVF 130
>3d0r_A Protein CALG3; calicheamicin synthesis, glycosyltransferase,
enediyne antibiotic; HET: PE4; 1.90A {Micromonospora
echinospora} PDB: 3d0q_A* (A:1-222,A:384-398)
Length = 237
Score = 25.4 bits (54), Expect = 4.0
Identities = 13/113 (11%), Positives = 27/113 (23%), Gaps = 8/113 (7%)
Query: 38 NYVVRFTIPEFTSLCPVTSQPDFAHMILDYIPKDWLIESKSLKLFMASFRNHHSFHEDCT 97
E + P S + P+ + + + + +
Sbjct: 59 ADRAAAAGLEVVDVAPDYSAVKVFEQVAKDNPRFAETVATRPAIDLEEWGVQIAAVNRPL 118
Query: 98 IYIARRLVTILDPKWLRIGAYWYPRG-------GIPIDIFWQTSAPPEGVFLP 143
+ LV P L + G G+P Q++ G+
Sbjct: 119 VDGTMALVDDYRP-DLVVYEQGATVGLLAADRAGVPAVQRNQSAWRTRGMHRS 170
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix,
anti-parrallel beta sheet, double straded anti-parallel
beta helix, metal binding protein; 2.00A {Mus musculus}
(A:207-268)
Length = 62
Score = 25.1 bits (55), Expect = 4.5
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 47 EFTSLCPVTSQPDFAHMILDYIP--KDWLIES 76
+F + CP + P +M L IP K+ +I +
Sbjct: 12 QFNTNCPECNAPAQTNMKLVQIPHFKEVIIMA 43
>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA
FAD; 1.54A {Staphylococcus aureus} (A:1-113,A:251-315)
Length = 178
Score = 25.0 bits (54), Expect = 4.5
Identities = 5/21 (23%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
Query: 121 PRGGIPIDIFWQTSAPPEGVF 141
+G IP++ ++T+ P ++
Sbjct: 118 RKGFIPVNDKFETNVP--NIY 136
>2v3a_A Rubredoxin reductase; alkane degradation, NADH
oxidoreductase, FAD, NAD, flavoprotein, oxidoreductase;
HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
(A:1-109,A:245-307)
Length = 172
Score = 25.1 bits (54), Expect = 4.6
Identities = 11/97 (11%), Positives = 25/97 (25%), Gaps = 13/97 (13%)
Query: 56 SQPDFAHMILDYIPKDWLIESKSLKLFMASFRNHHSFHEDCTIYIARRLVTILDPKWLRI 115
S+P + D L ++ + + I + + I + +
Sbjct: 44 SKPMLSTGFSKNKDADGLAMAEPGAMAEQLNARILTHTRVTGIDPGHQRIWIGEEEVRYR 103
Query: 116 GAYWY-----------PRGGIPIDIFWQTSAPPEGVF 141
GI +D +TS ++
Sbjct: 104 DLVLAWTELAFAAGLAVNRGIVVDRSLRTSHA--NIY 138
>1rrv_A Glycosyltransferase GTFD; GT-B, rossmann fold; HET: DVV TYD;
2.00A {Amycolatopsis orientalis} (A:1-221,A:381-416)
Length = 257
Score = 25.0 bits (53), Expect = 4.7
Identities = 9/108 (8%), Positives = 17/108 (15%), Gaps = 6/108 (5%)
Query: 41 VRFTIPEFTSLCPVTSQPDFAHMILDYIP-----KDWLIESKSLKLFMASFRNHHSFHED 95
R P + L + +L +
Sbjct: 31 TRMCAPPAAEERLAEVGVPHVPVGLPQHMMLQEGMPPPPPEEEQRLAAMTVEMQFDAVPG 90
Query: 96 CTIYIARRLVTILDPKWLRIGAYWYPRGGIPIDIFWQTSAPPEGVFLP 143
A + + G+P + LP
Sbjct: 91 AAEGCAAVVAVGDLAAAT-GVRSVAEKLGLPFFYSVPSPVYLASPHLP 137
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD
biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia
coli} (A:1-238,A:355-540)
Length = 424
Score = 24.7 bits (52), Expect = 5.4
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 113 LRIGAYWYPRGGIPIDIFWQTSAP 136
R G GG+ +D +T
Sbjct: 229 WRAGCRVANLGGVMVDDHGRTDVE 252
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase,
oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa}
PDB: 1zx9_A* (A:1-146,A:288-338)
Length = 197
Score = 24.8 bits (53), Expect = 5.6
Identities = 7/20 (35%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Query: 122 RGGIPIDIFWQTSAPPEGVF 141
+G I ID +TS P ++
Sbjct: 147 QGAIVIDQGMRTSNP--NIY 164
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET:
FAD; 1.74A {Escherichia coli} (A:1-139,A:282-332)
Length = 190
Score = 24.9 bits (53), Expect = 5.7
Identities = 5/20 (25%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Query: 122 RGGIPIDIFWQTSAPPEGVF 141
+G I +D + T+ G++
Sbjct: 140 KGYIVVDKYQNTNIE--GIY 157
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin,
flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
(A:1-122,A:268-319)
Length = 174
Score = 24.8 bits (53), Expect = 5.7
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 112 WLRIGAYWYPRGGIPIDIFWQTSAPPEGVF 141
G I +D +TS P GV+
Sbjct: 112 TYHAKYVIITTGYIVVDSRQRTSVP--GVY 139
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET:
FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A*
2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
(A:1-109,A:241-311)
Length = 180
Score = 24.8 bits (53), Expect = 6.1
Identities = 15/107 (14%), Positives = 26/107 (24%), Gaps = 14/107 (13%)
Query: 47 EFTSLCPVTSQPDFAHMILDYIPKDWLIESKSLKLFMASFRNHHSFHEDCTIYIARRLVT 106
T + +P + E L A + V
Sbjct: 34 LITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFDPQAHTVA 93
Query: 107 ILDPKWLRIGAYWY------------PRGGIPIDIFWQTSAPPEGVF 141
+ D + L G GI +D + +T+ P V+
Sbjct: 94 LSDGRTLPYGTLVLATDALARAAGLACDDGIFVDAYGRTTCP--DVY 138
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP),
thimain-dependent enzymes, FAD, enzyme, lyase; HET: FAD
TDP 1PE; 2.70A {Escherichia coli} (A:1-204)
Length = 204
Score = 24.7 bits (53), Expect = 6.1
Identities = 9/83 (10%), Positives = 22/83 (26%), Gaps = 11/83 (13%)
Query: 72 WLIESKSLKLFMASFRNHHSFHEDCTIYIARRLVTILDPKWLR------IGAYWYPRGG- 124
I ++ + + E +++ VT+ + + R G
Sbjct: 121 LCITGQAPRARLHKEDFQAVDIEAIAKPVSKXAVTVREAALVPRVLQQAFHLXRSGRPGP 180
Query: 125 ----IPIDIFWQTSAPPEGVFLP 143
+P D+ + P
Sbjct: 181 VLVDLPFDVQVAEIEFDPDXYEP 203
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC,
oxidoreductase, structural genomics, protein structure
initiative; 2.75A {Pyrococcus horikoshii}
(A:1-110,A:246-318)
Length = 183
Score = 24.7 bits (53), Expect = 6.4
Identities = 6/21 (28%), Positives = 8/21 (38%), Gaps = 2/21 (9%)
Query: 121 PRGGIPIDIFWQTSAPPEGVF 141
G I + QTS V+
Sbjct: 123 ETGAIWTNEKMQTSVE--NVY 141
>2j5d_A BNIP3 TM, BCL2/adenovirus E1B 19 kDa protein-interacting
protein 3; membrane protein, mitochondrion,
transmembrane, transmembrane domain, membrane; NMR {Homo
sapiens} PDB: 2ka1_A 2ka2_A (A:)
Length = 45
Score = 24.4 bits (53), Expect = 6.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 70 KDWLIESKSLKLFMASFRNHHSFHEDCTIYIARRLVT 106
K + ++ LK+F+ S H IYI RRL T
Sbjct: 8 KGGIFSAEFLKVFLPSLLLSHLLAIGLGIYIGRRLTT 44
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD;
2.60A {Plasmodium falciparum} (A:1-159,A:272-374)
Length = 262
Score = 24.5 bits (52), Expect = 6.8
Identities = 4/15 (26%), Positives = 6/15 (40%)
Query: 122 RGGIPIDIFWQTSAP 136
I +D +TS
Sbjct: 179 NNYIVVDENQRTSVN 193
>2vd2_A ATP phosphoribosyltransferase; HISG, cytoplasm,
glycosyltransferase, histidine biosynthesis, amino-acid
biosynthesis; 2.85A {Bacillus subtilis}
(A:1-94,A:180-214)
Length = 129
Score = 24.3 bits (53), Expect = 7.7
Identities = 5/26 (19%), Positives = 6/26 (23%)
Query: 129 IFWQTSAPPEGVFLPNQDVPQYRGRG 154
I + DV Y G
Sbjct: 41 IIDVPEENLRFILAKPMDVTTYVEHG 66
>1m5h_A Formylmethanofuran--tetrahydromethanopterin
formyltransferase; alpha/beta sandwich; 2.00A
{Archaeoglobus fulgidus} (A:18-159)
Length = 142
Score = 24.2 bits (53), Expect = 9.3
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 98 IYIARRLVTILDPKWLRIGAY 118
I IAR L+T D W + A
Sbjct: 1 IKIARVLITGYDYYWAWVAAN 21
>1m5s_A Formylmethanofuran--tetrahydromethanopterin
formyltransferase; alpha/beta sandwich; 1.85A
{Methanosarcina barkeri} (A:18-159)
Length = 142
Score = 24.2 bits (53), Expect = 9.4
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 98 IYIARRLVTILDPKWLRIGAY 118
I IAR L+T +W + A
Sbjct: 1 IKIARVLITAATKRWALVAAT 21
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.323 0.141 0.461
Gapped
Lambda K H
0.267 0.0634 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,341,560
Number of extensions: 60288
Number of successful extensions: 180
Number of sequences better than 10.0: 1
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 41
Length of query: 154
Length of database: 4,956,049
Length adjustment: 81
Effective length of query: 73
Effective length of database: 2,217,844
Effective search space: 161902612
Effective search space used: 161902612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.6 bits)