RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780344|ref|YP_003064757.1| 7-cyano-7-deazaguanine
reductase [Candidatus Liberibacter asiaticus str. psy62]
(154 letters)
>3bp1_A NADPH-dependent 7-cyano-7-deazaguanine reductase; alpha-beta
structure, structural genomics, PSI-2; HET: MSE GUN;
1.53A {Vibrio cholerae o1 biovar eltor str}
Length = 290
Score = 125 bits (315), Expect = 4e-30
Identities = 33/127 (25%), Positives = 62/127 (48%), Gaps = 7/127 (5%)
Query: 21 DPNEALLERIPSQNKNLNYVVRFTIPEFTSLCPVTSQPDFAHMILDYIPKDWLIESKSLK 80
+ ++ALL+ +Q + ++ V+ S C +T+QPD+ + + Y + ++L
Sbjct: 169 EFDDALLQG-AAQGEEVSEVLHS--HLLKSNCLITNQPDWGSVEIAYHGAK--MNREALL 223
Query: 81 LFMASFRNHHSFHEDCTIYIARRLVTILDPKWLRIGAYWYPRGGIPIDIFWQTS--APPE 138
++ SFR H+ FHE C I ++ P+ L + A + RGG+ I+ F + AP
Sbjct: 224 RYLVSFREHNEFHEQCVERIFTDIMRYCQPQSLTVYARYTRRGGLDINPFRSSHQSAPNH 283
Query: 139 GVFLPNQ 145
+ Q
Sbjct: 284 NQRMARQ 290
Score = 26.4 bits (58), Expect = 2.6
Identities = 26/115 (22%), Positives = 44/115 (38%), Gaps = 21/115 (18%)
Query: 12 LGGKAKPCDDPNEALLERIPSQNKNLNYVVRFTIP----------EFTSL----CPVTSQ 57
LG K + + + +LL+ +P + + T+P E + L P +
Sbjct: 24 LGKKTEYANQYDPSLLQPVPRSLNRNDLHLSATLPFQGCDIWTLYELSWLNQKGLPQVA- 82
Query: 58 PDFAHMILDYIPKDWLIESKSLKLFMASFRNHHSFHEDCTIYIARRLVTILDPKW 112
+ + + LIESKS KL++ S+ N F + RLV L
Sbjct: 83 --IGEVSIPATSAN-LIESKSFKLYLNSY-NQTRF--ASWDEVQTRLVHDLSACA 131
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 41.5 bits (97), Expect = 8e-05
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 16/84 (19%)
Query: 4 ITLNGLSILGGKAKPCDDPNEALLERIPSQNKNLNYVVRF---TIPEFTS--LCPVTSQP 58
+L GL++ KAK +++ RIP + L + RF P F S L P +
Sbjct: 384 QSLYGLNLTLRKAKAPSGLDQS---RIPFSERKLKFSNRFLPVASP-FHSHLLVPASDL- 438
Query: 59 DFAHMIL-DYIPKDWLIESKSLKL 81
I D + + +K +++
Sbjct: 439 -----INKDLVKNNVSFNAKDIQI 457
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex,
transferase/RNA complex; 3.10A {Escherichia coli} PDB:
2det_A 2deu_A*
Length = 380
Score = 30.8 bits (69), Expect = 0.12
Identities = 21/137 (15%), Positives = 40/137 (29%), Gaps = 5/137 (3%)
Query: 20 DDPNEALLERIPSQNKNLNYVVRFTIPEFTSLCPVTSQPDFAHMILDYIPKDWLIESKSL 79
D ++ L R NK+ +Y + E + + L+ +K
Sbjct: 146 DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKK 205
Query: 80 KLFMASFRNHHSFHEDCTIYIARRLVTILDPKWLRIG----AYWYPRG-GIPIDIFWQTS 134
F F E Y+ + I+ IG ++ G + I
Sbjct: 206 DSTGICFIGERKFREFLGRYLPAQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKE 265
Query: 135 APPEGVFLPNQDVPQYR 151
E ++ ++DV
Sbjct: 266 GTEEPWYVVDKDVENNI 282
>1sr4_C CDT C, cytolethal distending toxin protein C; bacterial, virulence,
DNA damage, genotoxin, cytotoxins, cell cycle,
apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP:
b.42.2.1
Length = 166
Score = 29.9 bits (67), Expect = 0.25
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 9 LSILGGKAKPCDDPNEALLERIPSQN 34
+ LG C D + + IP+
Sbjct: 77 FAFLGKGTTDCKDTDHTVFNLIPTNT 102
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping
sickness, flavoPro redox-active center; HET: FAD WPF;
1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A*
2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A*
1bzl_A* 1aog_A*
Length = 495
Score = 28.8 bits (64), Expect = 0.50
Identities = 12/52 (23%), Positives = 23/52 (44%)
Query: 86 FRNHHSFHEDCTIYIARRLVTILDPKWLRIGAYWYPRGGIPIDIFWQTSAPP 137
F + + D + R+ D + +G P+GG+ +D F +T+ P
Sbjct: 273 FESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTNVPN 324
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural
genomics, NPPSFA; HET: FAD; 2.10A {Thermus thermophilus
HB8}
Length = 335
Score = 27.0 bits (58), Expect = 1.9
Identities = 10/78 (12%), Positives = 20/78 (25%), Gaps = 2/78 (2%)
Query: 64 ILDYIPKDWLIESKSLKLFMASFRNHHSFHEDCTIYIARRLVTILDPKWLRIGAYWYPRG 123
+L + + ++ + + I L +
Sbjct: 208 VLTPYELRRVEGDERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGPLANWGLALEKN 267
Query: 124 GIPIDIFWQTSAPPEGVF 141
I +D TS P GV+
Sbjct: 268 KIKVDTTMATSIP--GVY 283
>2f2f_C CDT C, cytolethal distending toxin C; actinobacillus
actinomycetemcomitans, oligomerization, stability and
toxic activity; 2.40A {Aggregatibacter
actinomycetemcomitans} SCOP: b.42.2.1
Length = 186
Score = 26.9 bits (59), Expect = 1.9
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 9 LSILGGKAKPCDDPNEALLERIPSQN 34
+ G C D + + IP+
Sbjct: 97 FAFPGEGTTDCKDIDHTVFNLIPTNT 122
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix,
anti-parrallel beta sheet, double straded anti-parallel
beta helix, metal binding protein; 2.00A {Mus musculus}
Length = 404
Score = 26.4 bits (58), Expect = 2.9
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 12/54 (22%)
Query: 28 ERIPSQNKNLNY------------VVRFTIPEFTSLCPVTSQPDFAHMILDYIP 69
+R P Q + L +R + +F + CP + P +M L IP
Sbjct: 187 DRTPQQAEMLGLQAEAPEEKAEEEDLRNEVLQFNTNCPECNAPAQTNMKLVQIP 240
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD,
disulphide oxidoreductase; HET: FAD; 1.90A {Escherichia
coli} SCOP: c.3.1.5 c.3.1.5
Length = 310
Score = 26.0 bits (56), Expect = 3.3
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 109 DPKWLRIGAYWYPRGGIPIDIFWQTSAPPEGVF 141
+ WL G I ID +T+ GVF
Sbjct: 243 NTNWLEGAVERNRMGEIIIDAKCETNVK--GVF 273
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.7 bits (55), Expect = 4.1
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 20/45 (44%)
Query: 75 ESKSLKLFMASFRNHHSFHEDCTIYIARRLVTILD--PKWLRIGA 117
E ++LK AS + + D D P L I A
Sbjct: 18 EKQALKKLQASLK----LYAD-------------DSAPA-LAIKA 44
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile}
PDB: 2rab_A*
Length = 463
Score = 25.5 bits (55), Expect = 4.8
Identities = 15/124 (12%), Positives = 28/124 (22%), Gaps = 10/124 (8%)
Query: 35 KNLNYVVRFTIPEFTSLCPVTSQPDFAHMILDYIPKDWLIESKSLKLFMASFRNHHSFHE 94
++ V E L + ++ + +
Sbjct: 186 RSFGSEVTVVALEDRLLFQFDPLLSATLAENMHAQGIETHLEFAVAALERDAQGTTLVAQ 245
Query: 95 DCTIYIARRLVTI---LDPKWLRIGAYW-----YPRGGIPIDIFWQTSAPPEGVFLPNQD 146
D T V P +G G +P D + T+ P GV+
Sbjct: 246 DGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAYQNTNVP--GVYALGDI 303
Query: 147 VPQY 150
+
Sbjct: 304 TGRD 307
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A
{Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1lpf_A*
Length = 476
Score = 25.1 bits (54), Expect = 7.3
Identities = 15/75 (20%), Positives = 24/75 (32%)
Query: 62 HMILDYIPKDWLIESKSLKLFMASFRNHHSFHEDCTIYIARRLVTILDPKWLRIGAYWYP 121
++L +++K + + S D I R D G
Sbjct: 237 KILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDE 296
Query: 122 RGGIPIDIFWQTSAP 136
RG I +D + TS P
Sbjct: 297 RGFIYVDDYCATSVP 311
>1m5h_A Formylmethanofuran--tetrahydromethanopterin formyltransferase;
alpha/beta sandwich; 2.00A {Archaeoglobus fulgidus}
SCOP: d.58.33.1 d.58.33.1
Length = 297
Score = 25.0 bits (55), Expect = 7.7
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 91 SFHEDCTIYIARRLVTILDPKWLRIGAY 118
+F E I IAR L+T D W + A
Sbjct: 11 TFAEAFDIKIARVLITGYDYYWAWVAAN 38
>1aog_A Trypanothione reductase; FAD dependent disulphide oxidoreductase;
HET: FAD; 2.30A {Trypanosoma cruzi} SCOP: c.3.1.5
c.3.1.5 d.87.1.1 PDB: 1gxf_A* 1bzl_A* 1nda_A*
Length = 485
Score = 24.9 bits (53), Expect = 8.3
Identities = 4/16 (25%), Positives = 9/16 (56%)
Query: 121 PRGGIPIDIFWQTSAP 136
GG+ +D + +T+
Sbjct: 303 KNGGVQVDEYSRTNVS 318
>1ftr_A FTR, formylmethanofuran\:tetrahydromethanopterin formyltransferase;
methanogenesis, archae, acyltransferase,
hyperthermophilic, halophilic; 1.70A {Methanopyrus
kandleri} SCOP: d.58.33.1 d.58.33.1 PDB: 2fhj_A* 2fhk_A*
Length = 296
Score = 25.0 bits (55), Expect = 8.3
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 91 SFHEDCTIYIARRLVTILDPKWLRIGAY 118
+F E +AR L+T KW I
Sbjct: 11 TFAEAFEAKMARVLITAASHKWAMIAVK 38
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 24.8 bits (53), Expect = 8.4
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 7 NGLSILGGKAK--PCDDPNEALLER 29
N L L +A+ P +D NE LLER
Sbjct: 1266 NELEALKLEAEEIPSEDQNEFLLER 1290
>3m4w_A Sigma-E factor regulatory protein RSEB; RSEA, RSEB, RSEP, stress
response, sigma factor, periplasm, membrane,
transmembrane; 2.30A {Escherichia coli} PDB: 2p4b_A
2v43_A 2v42_A
Length = 295
Score = 24.7 bits (53), Expect = 9.1
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 24 EALLERIPSQNKNLNYVVRFT 44
ALL+++ +++LNY + F
Sbjct: 5 GALLQQMNLASQSLNYELSFI 25
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.323 0.141 0.461
Gapped
Lambda K H
0.267 0.0514 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,489,814
Number of extensions: 67642
Number of successful extensions: 163
Number of sequences better than 10.0: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 21
Length of query: 154
Length of database: 5,693,230
Length adjustment: 84
Effective length of query: 70
Effective length of database: 3,656,734
Effective search space: 255971380
Effective search space used: 255971380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.3 bits)