RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780344|ref|YP_003064757.1| 7-cyano-7-deazaguanine reductase [Candidatus Liberibacter asiaticus str. psy62] (154 letters) >3bp1_A NADPH-dependent 7-cyano-7-deazaguanine reductase; alpha-beta structure, structural genomics, PSI-2; HET: MSE GUN; 1.53A {Vibrio cholerae o1 biovar eltor str} Length = 290 Score = 125 bits (315), Expect = 4e-30 Identities = 33/127 (25%), Positives = 62/127 (48%), Gaps = 7/127 (5%) Query: 21 DPNEALLERIPSQNKNLNYVVRFTIPEFTSLCPVTSQPDFAHMILDYIPKDWLIESKSLK 80 + ++ALL+ +Q + ++ V+ S C +T+QPD+ + + Y + ++L Sbjct: 169 EFDDALLQG-AAQGEEVSEVLHS--HLLKSNCLITNQPDWGSVEIAYHGAK--MNREALL 223 Query: 81 LFMASFRNHHSFHEDCTIYIARRLVTILDPKWLRIGAYWYPRGGIPIDIFWQTS--APPE 138 ++ SFR H+ FHE C I ++ P+ L + A + RGG+ I+ F + AP Sbjct: 224 RYLVSFREHNEFHEQCVERIFTDIMRYCQPQSLTVYARYTRRGGLDINPFRSSHQSAPNH 283 Query: 139 GVFLPNQ 145 + Q Sbjct: 284 NQRMARQ 290 Score = 26.4 bits (58), Expect = 2.6 Identities = 26/115 (22%), Positives = 44/115 (38%), Gaps = 21/115 (18%) Query: 12 LGGKAKPCDDPNEALLERIPSQNKNLNYVVRFTIP----------EFTSL----CPVTSQ 57 LG K + + + +LL+ +P + + T+P E + L P + Sbjct: 24 LGKKTEYANQYDPSLLQPVPRSLNRNDLHLSATLPFQGCDIWTLYELSWLNQKGLPQVA- 82 Query: 58 PDFAHMILDYIPKDWLIESKSLKLFMASFRNHHSFHEDCTIYIARRLVTILDPKW 112 + + + LIESKS KL++ S+ N F + RLV L Sbjct: 83 --IGEVSIPATSAN-LIESKSFKLYLNSY-NQTRF--ASWDEVQTRLVHDLSACA 131 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 41.5 bits (97), Expect = 8e-05 Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 16/84 (19%) Query: 4 ITLNGLSILGGKAKPCDDPNEALLERIPSQNKNLNYVVRF---TIPEFTS--LCPVTSQP 58 +L GL++ KAK +++ RIP + L + RF P F S L P + Sbjct: 384 QSLYGLNLTLRKAKAPSGLDQS---RIPFSERKLKFSNRFLPVASP-FHSHLLVPASDL- 438 Query: 59 DFAHMIL-DYIPKDWLIESKSLKL 81 I D + + +K +++ Sbjct: 439 -----INKDLVKNNVSFNAKDIQI 457 >2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A* Length = 380 Score = 30.8 bits (69), Expect = 0.12 Identities = 21/137 (15%), Positives = 40/137 (29%), Gaps = 5/137 (3%) Query: 20 DDPNEALLERIPSQNKNLNYVVRFTIPEFTSLCPVTSQPDFAHMILDYIPKDWLIESKSL 79 D ++ L R NK+ +Y + E + + L+ +K Sbjct: 146 DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKK 205 Query: 80 KLFMASFRNHHSFHEDCTIYIARRLVTILDPKWLRIG----AYWYPRG-GIPIDIFWQTS 134 F F E Y+ + I+ IG ++ G + I Sbjct: 206 DSTGICFIGERKFREFLGRYLPAQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKE 265 Query: 135 APPEGVFLPNQDVPQYR 151 E ++ ++DV Sbjct: 266 GTEEPWYVVDKDVENNI 282 >1sr4_C CDT C, cytolethal distending toxin protein C; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: b.42.2.1 Length = 166 Score = 29.9 bits (67), Expect = 0.25 Identities = 6/26 (23%), Positives = 10/26 (38%) Query: 9 LSILGGKAKPCDDPNEALLERIPSQN 34 + LG C D + + IP+ Sbjct: 77 FAFLGKGTTDCKDTDHTVFNLIPTNT 102 >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* Length = 495 Score = 28.8 bits (64), Expect = 0.50 Identities = 12/52 (23%), Positives = 23/52 (44%) Query: 86 FRNHHSFHEDCTIYIARRLVTILDPKWLRIGAYWYPRGGIPIDIFWQTSAPP 137 F + + D + R+ D + +G P+GG+ +D F +T+ P Sbjct: 273 FESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTNVPN 324 >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA; HET: FAD; 2.10A {Thermus thermophilus HB8} Length = 335 Score = 27.0 bits (58), Expect = 1.9 Identities = 10/78 (12%), Positives = 20/78 (25%), Gaps = 2/78 (2%) Query: 64 ILDYIPKDWLIESKSLKLFMASFRNHHSFHEDCTIYIARRLVTILDPKWLRIGAYWYPRG 123 +L + + ++ + + I L + Sbjct: 208 VLTPYELRRVEGDERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGPLANWGLALEKN 267 Query: 124 GIPIDIFWQTSAPPEGVF 141 I +D TS P GV+ Sbjct: 268 KIKVDTTMATSIP--GVY 283 >2f2f_C CDT C, cytolethal distending toxin C; actinobacillus actinomycetemcomitans, oligomerization, stability and toxic activity; 2.40A {Aggregatibacter actinomycetemcomitans} SCOP: b.42.2.1 Length = 186 Score = 26.9 bits (59), Expect = 1.9 Identities = 5/26 (19%), Positives = 9/26 (34%) Query: 9 LSILGGKAKPCDDPNEALLERIPSQN 34 + G C D + + IP+ Sbjct: 97 FAFPGEGTTDCKDIDHTVFNLIPTNT 122 >2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus} Length = 404 Score = 26.4 bits (58), Expect = 2.9 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 12/54 (22%) Query: 28 ERIPSQNKNLNY------------VVRFTIPEFTSLCPVTSQPDFAHMILDYIP 69 +R P Q + L +R + +F + CP + P +M L IP Sbjct: 187 DRTPQQAEMLGLQAEAPEEKAEEEDLRNEVLQFNTNCPECNAPAQTNMKLVQIP 240 >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphide oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 Length = 310 Score = 26.0 bits (56), Expect = 3.3 Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 2/33 (6%) Query: 109 DPKWLRIGAYWYPRGGIPIDIFWQTSAPPEGVF 141 + WL G I ID +T+ GVF Sbjct: 243 NTNWLEGAVERNRMGEIIIDAKCETNVK--GVF 273 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 25.7 bits (55), Expect = 4.1 Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 20/45 (44%) Query: 75 ESKSLKLFMASFRNHHSFHEDCTIYIARRLVTILD--PKWLRIGA 117 E ++LK AS + + D D P L I A Sbjct: 18 EKQALKKLQASLK----LYAD-------------DSAPA-LAIKA 44 >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* Length = 463 Score = 25.5 bits (55), Expect = 4.8 Identities = 15/124 (12%), Positives = 28/124 (22%), Gaps = 10/124 (8%) Query: 35 KNLNYVVRFTIPEFTSLCPVTSQPDFAHMILDYIPKDWLIESKSLKLFMASFRNHHSFHE 94 ++ V E L + ++ + + Sbjct: 186 RSFGSEVTVVALEDRLLFQFDPLLSATLAENMHAQGIETHLEFAVAALERDAQGTTLVAQ 245 Query: 95 DCTIYIARRLVTI---LDPKWLRIGAYW-----YPRGGIPIDIFWQTSAPPEGVFLPNQD 146 D T V P +G G +P D + T+ P GV+ Sbjct: 246 DGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAYQNTNVP--GVYALGDI 303 Query: 147 VPQY 150 + Sbjct: 304 TGRD 307 >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* Length = 476 Score = 25.1 bits (54), Expect = 7.3 Identities = 15/75 (20%), Positives = 24/75 (32%) Query: 62 HMILDYIPKDWLIESKSLKLFMASFRNHHSFHEDCTIYIARRLVTILDPKWLRIGAYWYP 121 ++L +++K + + S D I R D G Sbjct: 237 KILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDE 296 Query: 122 RGGIPIDIFWQTSAP 136 RG I +D + TS P Sbjct: 297 RGFIYVDDYCATSVP 311 >1m5h_A Formylmethanofuran--tetrahydromethanopterin formyltransferase; alpha/beta sandwich; 2.00A {Archaeoglobus fulgidus} SCOP: d.58.33.1 d.58.33.1 Length = 297 Score = 25.0 bits (55), Expect = 7.7 Identities = 11/28 (39%), Positives = 14/28 (50%) Query: 91 SFHEDCTIYIARRLVTILDPKWLRIGAY 118 +F E I IAR L+T D W + A Sbjct: 11 TFAEAFDIKIARVLITGYDYYWAWVAAN 38 >1aog_A Trypanothione reductase; FAD dependent disulphide oxidoreductase; HET: FAD; 2.30A {Trypanosoma cruzi} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1gxf_A* 1bzl_A* 1nda_A* Length = 485 Score = 24.9 bits (53), Expect = 8.3 Identities = 4/16 (25%), Positives = 9/16 (56%) Query: 121 PRGGIPIDIFWQTSAP 136 GG+ +D + +T+ Sbjct: 303 KNGGVQVDEYSRTNVS 318 >1ftr_A FTR, formylmethanofuran\:tetrahydromethanopterin formyltransferase; methanogenesis, archae, acyltransferase, hyperthermophilic, halophilic; 1.70A {Methanopyrus kandleri} SCOP: d.58.33.1 d.58.33.1 PDB: 2fhj_A* 2fhk_A* Length = 296 Score = 25.0 bits (55), Expect = 8.3 Identities = 9/28 (32%), Positives = 12/28 (42%) Query: 91 SFHEDCTIYIARRLVTILDPKWLRIGAY 118 +F E +AR L+T KW I Sbjct: 11 TFAEAFEAKMARVLITAASHKWAMIAVK 38 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 24.8 bits (53), Expect = 8.4 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%) Query: 7 NGLSILGGKAK--PCDDPNEALLER 29 N L L +A+ P +D NE LLER Sbjct: 1266 NELEALKLEAEEIPSEDQNEFLLER 1290 >3m4w_A Sigma-E factor regulatory protein RSEB; RSEA, RSEB, RSEP, stress response, sigma factor, periplasm, membrane, transmembrane; 2.30A {Escherichia coli} PDB: 2p4b_A 2v43_A 2v42_A Length = 295 Score = 24.7 bits (53), Expect = 9.1 Identities = 7/21 (33%), Positives = 14/21 (66%) Query: 24 EALLERIPSQNKNLNYVVRFT 44 ALL+++ +++LNY + F Sbjct: 5 GALLQQMNLASQSLNYELSFI 25 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.323 0.141 0.461 Gapped Lambda K H 0.267 0.0514 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,489,814 Number of extensions: 67642 Number of successful extensions: 163 Number of sequences better than 10.0: 1 Number of HSP's gapped: 160 Number of HSP's successfully gapped: 21 Length of query: 154 Length of database: 5,693,230 Length adjustment: 84 Effective length of query: 70 Effective length of database: 3,656,734 Effective search space: 255971380 Effective search space used: 255971380 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 52 (24.3 bits)